Citrus Sinensis ID: 042733
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 531 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.975 | 0.361 | 0.505 | 1e-153 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.868 | 0.323 | 0.554 | 1e-153 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.962 | 0.350 | 0.519 | 1e-151 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.962 | 0.350 | 0.519 | 1e-151 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.952 | 0.348 | 0.502 | 1e-148 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.971 | 0.351 | 0.495 | 1e-139 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | no | no | 0.969 | 0.356 | 0.496 | 1e-138 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.971 | 0.352 | 0.502 | 1e-138 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.971 | 0.359 | 0.494 | 1e-136 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.958 | 0.353 | 0.479 | 1e-132 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust.
Identities = 302/598 (50%), Positives = 369/598 (61%), Gaps = 80/598 (13%)
Query: 8 AIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQ------IGD-----LNSLSGAFRPG- 55
+I + +NK+GMVL FEPH I+ +++VYSVDMPQ G+ L +SGAFRPG
Sbjct: 817 SISESQNNKKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGV 876
Query: 56 --------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPH 107
GAGKTTLMDVLAGRK GGYI I +SGYP+KQETFARI GYCEQNDIHSP+
Sbjct: 877 LTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFARISGYCEQNDIHSPY 936
Query: 108 DTLYDF--------------THCLYMFIEEGMELVELNPFRQALF----------EQRKR 143
T+Y+ MF++E MELVEL P R AL EQRKR
Sbjct: 937 VTVYESLVYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLRSALVGLPGVNGLSTEQRKR 996
Query: 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSF 203
LT+AVE VANPSII DEP SGLDARAA V+R VRNTVD GRTVVCTIHQPSIDIF +F
Sbjct: 997 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1056
Query: 204 DELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQERAF 263
DELFL+K+ GQEI VGPLG S HLI YFE GV+KIK+GYN ATW+LEVTA +QE
Sbjct: 1057 DELFLMKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMML 1116
Query: 264 GVDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRW 323
G+DF+++Y+NS+LY+R KA+I+EL P P SK L F TQYSQS T+ A WK W
Sbjct: 1117 GIDFTEVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYW 1176
Query: 324 -------------------------------TKQQHLFNVMVSMYTAVLFLLVQNAGSLQ 352
+K Q L N M SMY AVLFL VQNA S+Q
Sbjct: 1177 RNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQ 1236
Query: 353 LVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMF 412
V A+E T+FYRE A G YSA+PYA + + + YAMIGFEW F
Sbjct: 1237 PVVAIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKF 1296
Query: 413 FWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDN-GE 471
FWYL +M F YFTFYGMM A++ +A IV++ FY +WNLF GF+IPRP +
Sbjct: 1297 FWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWR 1356
Query: 472 FQYGADGLL-GISGILDLDFLHHSLEIYRTGQMKQFNNFFTNYFGFRHDFVGIVAVVV 528
+ Y A+ + + G++ F ++ ++Q F YFGF+HDF+G+VA V+
Sbjct: 1357 WYYWANPVAWTLYGLVASQFGDIQTKLSDNETVEQ---FLRRYFGFKHDFLGVVAAVL 1411
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 541 bits (1394), Expect = e-153, Method: Compositional matrix adjust.
Identities = 297/536 (55%), Positives = 342/536 (63%), Gaps = 75/536 (13%)
Query: 5 TEAAIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQ-----------IGDLNSLSGAFR 53
+E +EA + KRGMVL FEPH I+ + +VYSVDMPQ + L ++GAFR
Sbjct: 802 SEGVVEAGANKKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFR 861
Query: 54 PG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIH 104
PG GAGKTTLMDVLAGRK GGYI NIT+SGYP+ Q+TFARI GYCEQ DIH
Sbjct: 862 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIH 921
Query: 105 SPHDTLYD---FTHCLYM-----------FIEEGMELVELNPFRQALF----------EQ 140
SPH T+Y+ ++ L + FIEE MELVEL P RQAL EQ
Sbjct: 922 SPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQ 981
Query: 141 RKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIF 200
RKRLT+AVE VANPSII DEP SGLDARAA V+R VRNTVD GRTVVCTIHQPSIDIF
Sbjct: 982 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1041
Query: 201 YSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQE 260
+FDELFLLK+ G+EI VGPLG S HLI+YFE I G++KI +GYN ATW+LEV+ SQE
Sbjct: 1042 EAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQE 1101
Query: 261 RAFGVDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQ 320
A GVDF+ +Y+NSELYKR K +I ELS+PAP SK L F TQYSQS T+ A WK
Sbjct: 1102 AALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHW 1161
Query: 321 QRWTK-------------------------------QQHLFNVMVSMYTAVLFLLVQNAG 349
W +Q L N M SMYTAVLFL +QNA
Sbjct: 1162 SYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAA 1221
Query: 350 SLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTA 409
S+Q V VE T+FYRE A G YSAMPYA + + L YAMIGFEWTA
Sbjct: 1222 SVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTA 1281
Query: 410 AMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRP 465
FFWYL M F FTFYGMMA A++ IA +VSS+FY IWNLF GF+IPRP
Sbjct: 1282 VKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRP 1337
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May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 534 bits (1375), Expect = e-151, Method: Compositional matrix adjust.
Identities = 307/591 (51%), Positives = 357/591 (60%), Gaps = 80/591 (13%)
Query: 15 NKRGMVLLFEPHYISLNEIVYSVDMPQ------IGD-----LNSLSGAFRPG-------- 55
+RGMVL F P +S + + YSVDMPQ + D L +SG+FRPG
Sbjct: 847 TQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGV 906
Query: 56 -GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDF- 113
GAGKTTLMDVLAGRK GGYI +I +SGYP+KQETFAR+ GYCEQNDIHSP T+Y+
Sbjct: 907 SGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESL 966
Query: 114 -------------THCLYMFIEEGMELVELNPFRQALF----------EQRKRLTVAVEF 150
++ MFIEE MELVEL R AL EQRKRLT+AVE
Sbjct: 967 LFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVEL 1026
Query: 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210
VANPSII DEP SGLDARAA V+R VRNTV+ GRTVVCTIHQPSIDIF +FDELFL+K
Sbjct: 1027 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMK 1086
Query: 211 QVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDI 270
+ G+EI GPLG S LI YFE I GVSKIKDGYN ATW+LEVT + QE+A GVDFSDI
Sbjct: 1087 RGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDI 1146
Query: 271 YRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRW------- 323
Y+ SELY+R KA+I +LS+PAP S L F TQYSQS T+ A WK W
Sbjct: 1147 YKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNA 1206
Query: 324 ------------------------TKQQHLFNVMVSMYTAVLFLLVQNAGSLQLVAAVEW 359
TK Q LFN M SMY AVLF+ V N S+Q V AVE
Sbjct: 1207 VRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVER 1266
Query: 360 TIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLM 419
T+FYRE A G YSA PYA + + + YAMIGFEWTAA FFWYL M
Sbjct: 1267 TVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFM 1326
Query: 420 LFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDN--GEFQYGAD 477
+F YFTFYGMMA L+ IA IVSS+FY IWNLF GFVIPRP V + +
Sbjct: 1327 VFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACP 1386
Query: 478 GLLGISGILDLDFLHHSLEIYRTGQMKQFNNFFTNYFGFRHDFVGIVAVVV 528
+ G++ F + +K F NYFGF+H ++G VA VV
Sbjct: 1387 VAWTLYGLVVSQFGDIETPMEDGTPVKV---FVENYFGFKHSWLGWVATVV 1434
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 534 bits (1375), Expect = e-151, Method: Compositional matrix adjust.
Identities = 307/591 (51%), Positives = 357/591 (60%), Gaps = 80/591 (13%)
Query: 15 NKRGMVLLFEPHYISLNEIVYSVDMPQ------IGD-----LNSLSGAFRPG-------- 55
+RGMVL F P +S + + YSVDMPQ + D L +SG+FRPG
Sbjct: 847 TQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGV 906
Query: 56 -GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDF- 113
GAGKTTLMDVLAGRK GGYI +I +SGYP+KQETFAR+ GYCEQNDIHSP T+Y+
Sbjct: 907 SGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESL 966
Query: 114 -------------THCLYMFIEEGMELVELNPFRQALF----------EQRKRLTVAVEF 150
++ MFIEE MELVEL R AL EQRKRLT+AVE
Sbjct: 967 LFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVEL 1026
Query: 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210
VANPSII DEP SGLDARAA V+R VRNTV+ GRTVVCTIHQPSIDIF +FDELFL+K
Sbjct: 1027 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMK 1086
Query: 211 QVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDI 270
+ G+EI GPLG S LI YFE I GVSKIKDGYN ATW+LEVT + QE+A GVDFSDI
Sbjct: 1087 RGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDI 1146
Query: 271 YRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRW------- 323
Y+ SELY+R KA+I +LS+PAP S L F TQYSQS T+ A WK W
Sbjct: 1147 YKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNA 1206
Query: 324 ------------------------TKQQHLFNVMVSMYTAVLFLLVQNAGSLQLVAAVEW 359
TK Q LFN M SMY AVLF+ V N S+Q V AVE
Sbjct: 1207 VRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVER 1266
Query: 360 TIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLM 419
T+FYRE A G YSA PYA + + + YAMIGFEWTAA FFWYL M
Sbjct: 1267 TVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFM 1326
Query: 420 LFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDN--GEFQYGAD 477
+F YFTFYGMMA L+ IA IVSS+FY IWNLF GFVIPRP V + +
Sbjct: 1327 VFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACP 1386
Query: 478 GLLGISGILDLDFLHHSLEIYRTGQMKQFNNFFTNYFGFRHDFVGIVAVVV 528
+ G++ F + +K F NYFGF+H ++G VA VV
Sbjct: 1387 VAWTLYGLVVSQFGDIETPMEDGTPVKV---FVENYFGFKHSWLGWVATVV 1434
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 525 bits (1352), Expect = e-148, Method: Compositional matrix adjust.
Identities = 296/589 (50%), Positives = 354/589 (60%), Gaps = 83/589 (14%)
Query: 12 NNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGD-----------LNSLSGAFRPG----- 55
++ +++GMVL F P IS N++ YSVDMP+ L +SG+FRPG
Sbjct: 836 SSASRKGMVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTAL 895
Query: 56 ----GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLY 111
GAGKTTLMDVLAGRK GGYI +I +SGYP+KQETFARI GYCEQNDIHSPH T+Y
Sbjct: 896 MGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVY 955
Query: 112 DF--------------THCLYMFIEEGMELVELNPFRQALF----------EQRKRLTVA 147
+ + MFIEE M+LVEL R AL EQRKRLT+A
Sbjct: 956 ESLVFSAWLRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIA 1015
Query: 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELF 207
VE VANPSII DEP SGLDARAA V+R VRNTV+ GRTVVCTIHQPSIDIF +FDELF
Sbjct: 1016 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELF 1075
Query: 208 LLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDF 267
L+K+ G+EI VGP+G +S LI YFE I GVS+IKDGYN ATW+LEVT+ +QE GVDF
Sbjct: 1076 LMKRGGEEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDF 1135
Query: 268 SDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRW---- 323
S+IYR SELY+R K +I ELS P P S L F TQYS+S T+ A WK W
Sbjct: 1136 SEIYRQSELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPS 1195
Query: 324 ---------------------------TKQQHLFNVMVSMYTAVLFLLVQNAGSLQLVAA 356
KQQ LFN M SMY AVL++ VQN+GS+Q V
Sbjct: 1196 YTAVRLLFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVV 1255
Query: 357 VEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYL 416
VE T+FYRE A G YSA PYA + L + Y+MIGFEWT A F WYL
Sbjct: 1256 VERTVFYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYL 1315
Query: 417 LLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGEFQYG- 475
M F YFTFYGMMA L+ IA I+SS+FY +WNLF G++IPRP + Y
Sbjct: 1316 FFMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCW 1375
Query: 476 -ADGLLGISGILDLDF--LHHSLEIYRTGQMKQFNNFFTNYFGFRHDFV 521
+ G++ F + H LE G + F T+YFGF H+F+
Sbjct: 1376 ICPVAWTLYGLVASQFGDIQHVLE----GDTRTVAQFVTDYFGFHHNFL 1420
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1276), Expect = e-139, Method: Compositional matrix adjust.
Identities = 301/607 (49%), Positives = 357/607 (58%), Gaps = 91/607 (14%)
Query: 5 TEAAIEANNH-NKRGMVLLFEPHYISLNEIVYSVDMPQ-------IGD----LNSLSGAF 52
T + I N+ +RGMVL F P ++ +I YSVDMPQ + D L +SG F
Sbjct: 847 TGSEIADNSQPTQRGMVLPFTPLSLTFEDIKYSVDMPQEMKAHGIVEDRLELLKGVSGCF 906
Query: 53 RPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDI 103
RPG GAGKTTLMDVLAGRK GGYI NI++SGYP+KQETFAR+ GYCEQNDI
Sbjct: 907 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISISGYPKKQETFARVSGYCEQNDI 966
Query: 104 HSPHDTLYDF--------------THCLYMFIEEGMELVELNPFRQAL----------FE 139
HSP T+ + ++ MFIEE MELVEL P R AL E
Sbjct: 967 HSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSIE 1026
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDI 199
QRKRLT+AVE VANPSII DEP SGLDARAA V+R VRNTV+ GRTVVCTIHQPSIDI
Sbjct: 1027 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDI 1086
Query: 200 FYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQ 259
F +FDELFL+K+ G+EI VGPLG S LI YFE I GVSKI DGYN ATW+LEVT +SQ
Sbjct: 1087 FEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFEGIQGVSKITDGYNPATWMLEVTTVSQ 1146
Query: 260 ERAFGVDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLA 319
E+A VDF DIYR SEL++R KA+I ELS P P S L F TQYSQS + A WK
Sbjct: 1147 EQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTQYSQSFLIQCLACLWKQH 1206
Query: 320 QQRWT-------------------------------KQQHLFNVMVSMYTAVLFLLVQNA 348
W + Q LFN M SMY AVLF+ V N
Sbjct: 1207 LSYWRNPPYNAIRLFFTTVIALIFGTIFWDLGGKMGQSQDLFNAMGSMYAAVLFIGVLNG 1266
Query: 349 GSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWT 408
S+Q V +VE T+FYRE A G YSA+PYA + + + ++ Y+MIGF+WT
Sbjct: 1267 QSVQPVVSVERTVFYRERAAGMYSALPYAFGQVAIEFPYTLVQSVIYSIIVYSMIGFQWT 1326
Query: 409 AAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVD 468
A FFWYL M F YFTFYGMMA L+ +A IVSS+FY IWNLF GFVI RP
Sbjct: 1327 VAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASIVSSAFYAIWNLFTGFVISRPATP 1386
Query: 469 NGEFQYGADGLLGISGILDLDFLHHSLEIYRTGQMKQ-------FNNFFTNYFGFRHDFV 521
Y I + + + L + + G + N F NYF F+H ++
Sbjct: 1387 VWWRWY--------CWICPVAWTLYGLIVSQYGDIVTPMDDGIPVNVFVENYFDFKHSWL 1438
Query: 522 GIVAVVV 528
G VAVV+
Sbjct: 1439 GFVAVVI 1445
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust.
Identities = 298/600 (49%), Positives = 365/600 (60%), Gaps = 85/600 (14%)
Query: 9 IEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQ-IGD----------LNSLSGAFRPG-- 55
I + KRGMVL F P I+ + I YSVDMPQ + D L +SGAFRPG
Sbjct: 827 ITGADTRKRGMVLPFTPLSITFDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVL 886
Query: 56 -------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHD 108
GAGKTTLMDVLAGRK GGYI +I++SGYP+KQETFARI GYCEQNDIHSPH
Sbjct: 887 TALMGVSGAGKTTLMDVLAGRKTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHV 946
Query: 109 TLYDF--------------THCLYMFIEEGMELVELNPFRQALF----------EQRKRL 144
T+Y+ + MF+EE MELVEL R AL EQRKRL
Sbjct: 947 TVYESLLYSAWLRLPSEVDSEARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRL 1006
Query: 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFD 204
T+AVE VANPSII DEP SGLDARAA V+R VRNTVD GRTVVCTIHQPSIDIF +FD
Sbjct: 1007 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1066
Query: 205 ELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFG 264
ELFL+K+ G+EI VGPLG +S HLI+YFE I GV KIKDGYN ATW+LEVT L+QE G
Sbjct: 1067 ELFLMKRGGEEIYVGPLGHNSCHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILG 1126
Query: 265 VDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRW- 323
++F+++YRNS+LY+R K +I+ELS P P S L F TQ+SQ T+ A WK + W
Sbjct: 1127 INFAEVYRNSDLYQRNKTLISELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWR 1186
Query: 324 ------------------------------TKQQHLFNVMVSMYTAVLFLLVQNAGSLQL 353
K+ LFN + SMY AVLF+ +QN ++Q
Sbjct: 1187 NPSYTATRIFFTTVIALIFGTIFLNLGKKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQP 1246
Query: 354 VAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFF 413
+ VE T+FYRE A G YSA+PYA + + + L Y++IGF+WT FF
Sbjct: 1247 IVDVERTVFYREKAAGMYSALPYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFF 1306
Query: 414 WYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGEFQ 473
WY+ M F F YFTFYGMMA A++ IA IVS++FY IWN+F GF+IPRP +
Sbjct: 1307 WYMFFMFFTFMYFTFYGMMAVAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRW 1366
Query: 474 YG-----ADGLLGISGILDLDFLHHSLEIYRTGQMKQFNNFFTNYFGFRHDFVGIVAVVV 528
Y A L G+ D + +LE G++ Q ++ YFGFRHD++G VA V
Sbjct: 1367 YSWACPVAWTLYGLVASQYGDITNSTLE---DGEVVQ--DYIRRYFGFRHDYLGYVATAV 1421
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 491 bits (1263), Expect = e-138, Method: Compositional matrix adjust.
Identities = 305/607 (50%), Positives = 365/607 (60%), Gaps = 91/607 (14%)
Query: 5 TEAAIEANNH-NKRGMVLLFEPHYISLNEIVYSVDMPQ-------IGD----LNSLSGAF 52
T + I N+ +RGMVL F P ++ + I YSVDMPQ + D L +SG+F
Sbjct: 843 TSSEIADNSQPTQRGMVLPFAPLSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSF 902
Query: 53 RPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDI 103
RPG GAGKTTLMDVLAGRK GGYI NIT+SGYP+KQETFAR+ GYCEQNDI
Sbjct: 903 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDI 962
Query: 104 HSPHDTLYDF--------------THCLYMFIEEGMELVELNPFRQALF----------E 139
HSP T+ + ++ MFIEE MELVEL P R AL E
Sbjct: 963 HSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTE 1022
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDI 199
QRKRLT+AVE VANPSII DEP SGLDARAA V+R VRNTVD GRTVVCTIHQPSIDI
Sbjct: 1023 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1082
Query: 200 FYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQ 259
F +FDELFL+K+ G+EI VGPLG S LI YFE I GVS+IKDGYN ATW+LEV+ +SQ
Sbjct: 1083 FEAFDELFLMKRGGEEIYVGPLGHQSSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQ 1142
Query: 260 ERAFGVDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLA 319
E+A GVDF DIYR SEL++R KA+I ELS P P S L F T+YS S + A WK+
Sbjct: 1143 EQALGVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMH 1202
Query: 320 QQRWT-------------------------------KQQHLFNVMVSMYTAVLFLLVQNA 348
W K Q LFN M SMY+AVLF+ V N+
Sbjct: 1203 LSYWRNPPYNAIRLFFTTVIALLFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNS 1262
Query: 349 GSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWT 408
S+Q V +VE T+FYRE A G YSA PYA + + + + Y+MIGF+WT
Sbjct: 1263 QSVQPVVSVERTVFYRERAAGMYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWT 1322
Query: 409 AAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVD 468
AA FFWYL M F F YFTFYGMMA L+ +A IVSS+FY IWNLF GF+IPRP V
Sbjct: 1323 AAKFFWYLFFMFFTFLYFTFYGMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVP 1382
Query: 469 NGEFQYGADGLLGISGILDLDFLHHSLEIYRTGQ-MKQFNN------FFTNYFGFRHDFV 521
Y I + + + L + G M ++ F NYF F+H ++
Sbjct: 1383 IWWRWY--------CWICPVAWTLYGLVASQFGDIMTPMDDGTPVKIFVENYFDFKHSWL 1434
Query: 522 GIVAVVV 528
G+VAVV+
Sbjct: 1435 GVVAVVI 1441
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 486 bits (1250), Expect = e-136, Method: Compositional matrix adjust.
Identities = 294/595 (49%), Positives = 363/595 (61%), Gaps = 79/595 (13%)
Query: 5 TEAAIEANNHNKRGMVLLFEPHYISLNEIVYSVDMP-----------QIGDLNSLSGAFR 53
T+ A+ + K+GMVL F+PH I+ +E+VYSVDMP ++ L S+SGAFR
Sbjct: 815 TQEGDSASENKKKGMVLPFDPHSITFDEVVYSVDMPPEMRESGTSDNRLVLLKSVSGAFR 874
Query: 54 PG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIH 104
PG GAGKTTLMDVLAGRK GGYI +I +SGYP+KQ+TFARI GYCEQNDIH
Sbjct: 875 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQDTFARISGYCEQNDIH 934
Query: 105 SPHDTLYD---FTHCL-----------YMFIEEGMELVELNPFRQALF----------EQ 140
SP+ T+++ ++ L MF+EE M+LVEL P R AL EQ
Sbjct: 935 SPYVTVFESLVYSAWLRLPQDVNEEKRMMFVEEVMDLVELTPLRSALVGLPGVNGLSTEQ 994
Query: 141 RKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIF 200
RKRLT+AVE VANPSII DEP SGLDARAA V+R VRNTVD GRTVVCTIHQPSIDIF
Sbjct: 995 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIF 1054
Query: 201 YSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQE 260
+FDELFL+K+ GQEI VGPLG S HLI YFE I GVSKI +GYN ATW+LEVTA SQE
Sbjct: 1055 EAFDELFLMKRGGQEIYVGPLGRQSCHLIKYFESIPGVSKIVEGYNPATWMLEVTASSQE 1114
Query: 261 RAFGVDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQ 320
A GVDF+D+Y+ S+LY+R KA+I ELS P P + L F +++SQ T+ A WK
Sbjct: 1115 MALGVDFTDLYKKSDLYRRNKALIDELSVPRPGTSDLHFDSEFSQPFWTQCMACLWKQHW 1174
Query: 321 QRW-------------------------------TKQQHLFNVMVSMYTAVLFLLVQNAG 349
W ++ Q L N M SMY AVLFL VQN+
Sbjct: 1175 SYWRNPAYTAVRLIFTTFIALIFGTMFWDIGTKVSRNQDLVNAMGSMYAAVLFLGVQNSS 1234
Query: 350 SLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTA 409
S+Q V +VE T+FYRE A G YSA+PYA + L Y+MIGFEWT
Sbjct: 1235 SVQPVVSVERTVFYREKAAGMYSAIPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTV 1294
Query: 410 AMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDN 469
A FFW M F F YFTF+GMM A++ +A IV+ FYT+WNLF GF++PRP +
Sbjct: 1295 AKFFWDFFFMFFTFLYFTFFGMMTVAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPI 1354
Query: 470 --GEFQYGADGLLGISGILDLDFLHHSLEIYRTGQMKQFNNFFTNYFGFRHDFVG 522
+ +G + G++ F L+ T Q + F + FGF+HDF+G
Sbjct: 1355 WWRWYYWGCPIAWTLYGLVASQF--GDLQDPLTDQNQTVEQFLRSNFGFKHDFLG 1407
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 284/592 (47%), Positives = 355/592 (59%), Gaps = 83/592 (14%)
Query: 9 IEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQ-IGD----------LNSLSGAFRPG-- 55
I + + K+GMVL F P I+ + + YSVDMPQ + D L +SGAFRPG
Sbjct: 824 IRKDGNRKKGMVLPFTPLSITFDNVKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPGVL 883
Query: 56 -------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHD 108
G GKTTLMDVLAGRK GGYI +I +SGYP+ QETFARI GYCEQNDIHSPH
Sbjct: 884 TALMGVSGRGKTTLMDVLAGRKTGGYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHV 943
Query: 109 TLYDFTHCLY----------------MFIEEGMELVELNPFRQALF----------EQRK 142
T+Y+ LY MF++E M+LVELN R +L EQRK
Sbjct: 944 TVYE--SLLYSAWLRLPAEVDEKQRKMFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRK 1001
Query: 143 RLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYS 202
RLT+AVE VANPSII DEP SGLDARAA V+R VRNTVD GRTVVCTIHQPSIDIF +
Sbjct: 1002 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEA 1061
Query: 203 FDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQERA 262
FDELFL+K+ G+EI VGPLG S HLI YFE I GV KIK+ YN ATW+LEVT +SQE
Sbjct: 1062 FDELFLMKRGGEEIYVGPLGRQSSHLIKYFESIDGVKKIKERYNPATWMLEVTTISQEEI 1121
Query: 263 FGVDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQR 322
G++F+++YRNS+LYKR K +I ELS P P SK L F+TQ+SQS + A WK +
Sbjct: 1122 LGLNFAEVYRNSDLYKRNKDLIKELSTPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSY 1181
Query: 323 WTKQQH-------------------------------LFNVMVSMYTAVLFLLVQNAGSL 351
W + L N M SMY AVLF+ +QNA ++
Sbjct: 1182 WRNPSYTATRLFFTVVIALIFGTIFWDLGKKRSTSLDLINAMGSMYAAVLFIGIQNAQTV 1241
Query: 352 QLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAM 411
Q + VE T+FYRE A G YSA+PYA + + L L Y+MIGF+WTAA
Sbjct: 1242 QPIVDVERTVFYREKAAGMYSALPYAYAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAK 1301
Query: 412 FFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDN-- 469
F WY+ M F F YFT+YGMMA A++ IA IV+++FY IWN+F GF+IPRP +
Sbjct: 1302 FLWYMFFMFFTFLYFTYYGMMAVAMTPNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWW 1361
Query: 470 GEFQYGADGLLGISGILDLDFLHHSLEIYRTGQMKQFNNFFTNYFGFRHDFV 521
+ + + G++ F ++ + + +F + GFRHDF+
Sbjct: 1362 RWYYWACPVAWTLYGLVVSQFGEYTDTMSDVDE--TVKDFLRRFLGFRHDFL 1411
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 531 | ||||||
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.979 | 0.364 | 0.511 | 1e-156 | |
| 357510219 | 1444 | Pleiotropic drug resistance protein [Med | 0.975 | 0.358 | 0.514 | 1e-155 | |
| 255576883 | 1417 | ATP-binding cassette transporter, putati | 0.971 | 0.364 | 0.519 | 1e-155 | |
| 224054164 | 1424 | pleiotropic drug resistance, ABC transpo | 0.951 | 0.354 | 0.522 | 1e-154 | |
| 255572797 | 1359 | ATP-binding cassette transporter, putati | 0.962 | 0.376 | 0.516 | 1e-154 | |
| 41052474 | 1078 | PDR-type ABC transporter 2 [Nicotiana ta | 0.979 | 0.482 | 0.51 | 1e-153 | |
| 357455077 | 1410 | Pleiotropic drug resistance protein [Med | 0.979 | 0.368 | 0.506 | 1e-153 | |
| 357510225 | 1483 | Pleiotropic drug resistance protein [Med | 0.975 | 0.349 | 0.506 | 1e-153 | |
| 255546579 | 1309 | ATP-binding cassette transporter, putati | 0.962 | 0.390 | 0.519 | 1e-153 | |
| 357455075 | 1427 | Pleiotropic drug resistance protein [Med | 0.979 | 0.364 | 0.506 | 1e-153 |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 309/604 (51%), Positives = 375/604 (62%), Gaps = 84/604 (13%)
Query: 6 EAAIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQ-----------IGDLNSLSGAFRP 54
++ +E+++ K+GMVL FEPH I+ +E+VYSVDMPQ + L +SGAFRP
Sbjct: 806 DSLVESSHGKKKGMVLPFEPHSITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRP 865
Query: 55 G---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHS 105
G GAGKTTLMDVLAGRK GGYI +I +SGYP+KQETFARI GYCEQNDIHS
Sbjct: 866 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHS 925
Query: 106 PHDTLYDF--------------THCLYMFIEEGMELVELNPFRQALF----------EQR 141
PH T+Y+ + MFIEE MELVELNP R +L EQR
Sbjct: 926 PHVTVYESLLYSAWLRLPSSVDSKTRKMFIEEVMELVELNPVRNSLVGLPGVSGLSTEQR 985
Query: 142 KRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFY 201
KRLT+AVE VANPSII DEP SGLDARAA V+R VRNTVD GRTVVCTIHQPSIDIF
Sbjct: 986 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1045
Query: 202 SFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQER 261
+FDELFL+K+ GQEI VGPLG S HLI YFE I GVSKIKDGYN ATW+LEVTA +QE
Sbjct: 1046 AFDELFLMKRGGQEIYVGPLGRHSSHLIKYFESIEGVSKIKDGYNPATWMLEVTATAQEL 1105
Query: 262 AFGVDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQ 321
+ GVDF+D+Y+NS+LY+R K +I EL +PAP SK L F TQYSQS + A WK Q
Sbjct: 1106 SLGVDFTDLYKNSDLYRRNKQLIQELGQPAPGSKDLHFPTQYSQSFLVQCQACLWK---Q 1162
Query: 322 RW----------------------------------TKQQHLFNVMVSMYTAVLFLLVQN 347
RW + + L N + SMYTAVLFL VQN
Sbjct: 1163 RWSYWRNPPYTAVRFFFTTFIALMFGTIFWDLGGKHSTRGDLLNAIGSMYTAVLFLGVQN 1222
Query: 348 AGSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEW 407
A S+Q V A+E T+FYRE A G YSA+PYA + ++ + YAMIGFEW
Sbjct: 1223 ASSVQPVVAIERTVFYREKAAGMYSALPYAFAQILVELPYVFVQAVTYGVIVYAMIGFEW 1282
Query: 408 TAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFV 467
TA FFWYL M F Y+TFYGMM L+ IA IV+++FY +WNLF GFV+ RP +
Sbjct: 1283 TAEKFFWYLFFMYFTLLYYTFYGMMTVGLTPNHHIASIVAAAFYAVWNLFSGFVVTRPSI 1342
Query: 468 DN--GEFQYGADGLLGISGILDLDFLHHSLEIYRTGQMKQFNNFFTNYFGFRHDFVGIVA 525
+ + I G++ F + + GQ K +F +Y+G +HDF+G+ A
Sbjct: 1343 PVWWRWYYWACPVAWTIYGLVASQFGDLTEPMTSEGQ-KIVKDFLEDYYGIKHDFIGVSA 1401
Query: 526 VVVG 529
VVV
Sbjct: 1402 VVVA 1405
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357510219|ref|XP_003625398.1| Pleiotropic drug resistance protein [Medicago truncatula] gi|355500413|gb|AES81616.1| Pleiotropic drug resistance protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 310/602 (51%), Positives = 372/602 (61%), Gaps = 84/602 (13%)
Query: 8 AIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQ-----------IGDLNSLSGAFRPG- 55
+E N+ KRGMVL FEPH I+ +E+ YSVDMPQ + L LSGAFRPG
Sbjct: 821 GVETNHRRKRGMVLPFEPHSITFDEVSYSVDMPQEMRTRGVVENMLVLLKGLSGAFRPGV 880
Query: 56 --------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPH 107
GAGKTTLMDVL+GRK GGYI NIT+SGYP+KQ+TFARI GYCEQ DIHSP+
Sbjct: 881 LTALMGVTGAGKTTLMDVLSGRKTGGYIGGNITISGYPKKQDTFARISGYCEQTDIHSPY 940
Query: 108 DTLYDFTHCLY----------------MFIEEGMELVELNPFRQALF----------EQR 141
T+Y+ LY MFIEE MELVEL P R AL EQR
Sbjct: 941 VTVYE--SLLYSAWLRLSPDINAETRKMFIEEVMELVELKPLRNALVGLPGVSSLSTEQR 998
Query: 142 KRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFY 201
KRLT+AVE VANPSII DEP SGLDARAA V+R VRNTVD GRTVVCTIHQPSIDIF
Sbjct: 999 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1058
Query: 202 SFDE---LFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALS 258
SFDE LFLLKQ GQEI VGPLG +S +LISYFE I GVSKIK GYN ATW+LEVT S
Sbjct: 1059 SFDEVIELFLLKQGGQEIYVGPLGHNSSNLISYFEGIKGVSKIKYGYNPATWMLEVTTSS 1118
Query: 259 QERAFGVDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKL 318
+ER G+DF+++Y+NSELY+R KA+I ELS PAP SK L F++QYS+S T+ A WK
Sbjct: 1119 KERELGIDFAEVYKNSELYRRNKALIKELSTPAPCSKDLYFTSQYSRSFWTQCMACLWKQ 1178
Query: 319 AQQRW-------------------------------TKQQHLFNVMVSMYTAVLFLLVQN 347
W K Q LFN M SMY+AVL + ++N
Sbjct: 1179 HWSYWRNPVYTAIRFMYSTAVAVMLGTMFWNLGSKIEKVQDLFNAMGSMYSAVLLIGIKN 1238
Query: 348 AGSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEW 407
++Q V +VE T+FYRE A G YSA+PYA + + + YAMIGFEW
Sbjct: 1239 GNAVQPVVSVERTVFYRERAAGMYSALPYAFAQVVIELPHVFVQSVVYGFIVYAMIGFEW 1298
Query: 408 TAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFV 467
T F W L M F F YFTFYGMM+ A++ I+IIVSS+FY+IWNLF GF++PRP +
Sbjct: 1299 TLVKFLWCLFFMYFTFLYFTFYGMMSVAMTPNNHISIIVSSAFYSIWNLFSGFIVPRPRI 1358
Query: 468 DNGEFQYGADGLLGIS--GILDLDFLHHSLEIYRTGQMKQFNNFFTNYFGFRHDFVGIVA 525
Y + S G++ + I + + +F NYFGF+HDF+G+VA
Sbjct: 1359 PVWWRWYSWANPVAWSLYGLVTSQYGDVKQNIETSDGRQTVEDFLRNYFGFKHDFLGVVA 1418
Query: 526 VV 527
+V
Sbjct: 1419 LV 1420
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255576883|ref|XP_002529327.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223531198|gb|EEF33044.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 315/606 (51%), Positives = 367/606 (60%), Gaps = 90/606 (14%)
Query: 5 TEAAIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGD-----------LNSLSGAFR 53
T + ++ +NK+GMVL FEPH I+ ++I YSVDMPQ L +SGAFR
Sbjct: 797 TNSTGSSHRNNKKGMVLPFEPHSITFDDIEYSVDMPQAMKNEGVHEDKLVLLKRVSGAFR 856
Query: 54 PG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIH 104
PG GAGKTTLMDVLAGRK GGYI NI +SGYP+ QETFARI GYCEQNDIH
Sbjct: 857 PGVLTALMGISGAGKTTLMDVLAGRKTGGYIEGNIKISGYPKIQETFARISGYCEQNDIH 916
Query: 105 SPHDTLYDF--------------THCLYMFIEEGMELVELNPFRQALF----------EQ 140
SPH T+Y+ T MFIEE MELVELNP RQAL EQ
Sbjct: 917 SPHITVYESLLFSAWLRLPSEVNTETRKMFIEEVMELVELNPLRQALVGLPGVNGLSTEQ 976
Query: 141 RKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIF 200
RKRLT+AVE VANPSII DEP SGLDARAA V+R VRNTVD GRTVVCTIHQPSIDIF
Sbjct: 977 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1036
Query: 201 YSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQE 260
+FDELFLLK+ G+EI VGPLG S HLI YFE I GV KIKDG+N ATW+LE+T+ +QE
Sbjct: 1037 EAFDELFLLKRGGEEIYVGPLGRHSCHLIKYFEGIEGVRKIKDGFNPATWMLEITSAAQE 1096
Query: 261 RAFGVDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQ 320
A VDF++IY+ SELY+R KA+I LSKPAP SK L F +QYS S + WK
Sbjct: 1097 IALDVDFANIYKTSELYRRNKALIKNLSKPAPGSKDLYFPSQYSLSFFGQFLTCLWKQQL 1156
Query: 321 QRW-------------------------------TKQQHLFNVMVSMYTAVLFLLVQNAG 349
W KQQ LFN M SMY +VLFL +QNA
Sbjct: 1157 SYWRNPPYTAVRFLFTTFIALIFGTMFWDLGSKIEKQQDLFNAMGSMYASVLFLGIQNAS 1216
Query: 350 SLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTA 409
S+Q V +VE T+FYRE A G YSA+PYA + T + YAMIGFEWTA
Sbjct: 1217 SVQPVVSVERTVFYRERAAGMYSALPYAFGQIVIELPYIFTQAAVYGVIVYAMIGFEWTA 1276
Query: 410 AMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDN 469
+ FFWYL F YFTFYGMM A+S QIA I++S+FY IWNLF GFVIPRP
Sbjct: 1277 SKFFWYLFFKYFTLLYFTFYGMMTVAVSPNHQIASIIASAFYAIWNLFSGFVIPRPRTPV 1336
Query: 470 GEFQYGADGLLGISGILDLDFLHHSLEIYRTGQMKQ-------FNNFFTNYFGFRHDFVG 522
Y I + + + L + G K+ +F +YFGFRHDF+G
Sbjct: 1337 WWRWY--------CWICPVAWTLYGLVASQFGDRKETLETGVTVEHFVRDYFGFRHDFLG 1388
Query: 523 IVAVVV 528
+VA VV
Sbjct: 1389 VVAAVV 1394
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054164|ref|XP_002298123.1| pleiotropic drug resistance, ABC transporter family protein [Populus trichocarpa] gi|222845381|gb|EEE82928.1| pleiotropic drug resistance, ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 313/599 (52%), Positives = 373/599 (62%), Gaps = 94/599 (15%)
Query: 14 HNKRGMVLLFEPHYISLNEIVYSVDMPQ-----------IGDLNSLSGAFRPG------- 55
+ +RG+++ FEPH I+ ++++YSVDMPQ + L +SGAFRPG
Sbjct: 813 NKQRGVIIPFEPHSITFDKVMYSVDMPQEMKSHGVHEDKLVLLKGVSGAFRPGVLTALMG 872
Query: 56 --GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDF 113
GAGKTT+MDVLAGRK GGYI NIT+SGYP+KQETFARI GYCEQNDIHSPH T+Y+
Sbjct: 873 ISGAGKTTMMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHITVYE- 931
Query: 114 THCLY----------------MFIEEGMELVELNPFRQALF----------EQRKRLTVA 147
LY MF+EE MELVELNP RQAL EQRKRLT+A
Sbjct: 932 -SLLYSAWLRLPTEVDIETRKMFVEEVMELVELNPLRQALVGLPGVDGLSTEQRKRLTIA 990
Query: 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELF 207
VE VANPSII DEP SGLDARAA V+R VRNTVD GRTVVCTIHQPSIDIF +FDELF
Sbjct: 991 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1050
Query: 208 LLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDF 267
LLK+ GQEI VGPLG S HLI YFE I GV+KIKDGYN ATW+LEVT+ ++E A GVDF
Sbjct: 1051 LLKRGGQEIYVGPLGRLSCHLIKYFEGIEGVNKIKDGYNPATWMLEVTSTAEELALGVDF 1110
Query: 268 SDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRW---- 323
++IYR+SEL++R +A+I +LS PAP SK L FSTQYS+S T+ A WK W
Sbjct: 1111 AEIYRSSELFRRNRALIKDLSTPAPGSKDLYFSTQYSRSFFTQCLACLWKQHWSYWRNPP 1170
Query: 324 ---------------------------TKQQHLFNVMVSMYTAVLFLLVQNAGSLQLVAA 356
TK+Q LFN M SMYTAVLFL VQNA S+Q V A
Sbjct: 1171 YTAIRFLSTTVIGLIFGTMFWDIGSKITKRQDLFNAMGSMYTAVLFLGVQNAASVQPVVA 1230
Query: 357 VEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYL 416
VE T+FYRE A G YSA+PYA + + Y+MIGF WT + FFWYL
Sbjct: 1231 VERTVFYRERAAGMYSALPYAFAQVLIELPYIFVQAAVYGVIVYSMIGFGWTISKFFWYL 1290
Query: 417 LLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGEFQYGA 476
M F YFTFYGMMA A+S QIA ++S++FY IWN+F GFVIPR + Y
Sbjct: 1291 YFMYFTLLYFTFYGMMAVAVSPNHQIASVISAAFYGIWNVFSGFVIPRSRMPLWWRWY-- 1348
Query: 477 DGLLGISGILDLDFLHHSLEIYRTGQMKQ-------FNNFFTNYFGFRHDFVGIVAVVV 528
S I + + + L + G MK F T Y F+HDF+G+VA V+
Sbjct: 1349 ------SWICPVFWTLYGLVASQFGDMKDRLETGETVEQFVTIYLDFKHDFLGVVAAVI 1401
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572797|ref|XP_002527331.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223533331|gb|EEF35083.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 311/602 (51%), Positives = 372/602 (61%), Gaps = 91/602 (15%)
Query: 10 EANNHNKRGMVLLFEPHYISLNEIVYSVDMPQ------IGD-----LNSLSGAFRPG--- 55
EAN++ K+GMVL FEPH I+ N+++YSVDMPQ I + L +SGAF+PG
Sbjct: 743 EANHNKKKGMVLPFEPHSITFNDVMYSVDMPQEMKSQGIAEDKLVLLKGVSGAFKPGVLT 802
Query: 56 ------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDT 109
GAGKTTLMDVLAGRK GGYI +I +SGYP+KQ+TFARI GYCEQNDIHSPH T
Sbjct: 803 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQDTFARISGYCEQNDIHSPHVT 862
Query: 110 LYDF--------------THCLYMFIEEGMELVELNPFRQALF----------EQRKRLT 145
+Y+ MF++E MELVELNP RQAL EQRKRLT
Sbjct: 863 VYESLIYSAWLRLAPEVDPETRKMFVDEVMELVELNPLRQALVGLPGVNGLSTEQRKRLT 922
Query: 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDE 205
+AVE VANPSII DEP SGLDARAA V+R VRNTVD GRTVVCTIHQPSIDIF +FDE
Sbjct: 923 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 982
Query: 206 LFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGV 265
LFL+K+ G+EI VGPLG S HLI+YFE I GVSKIKDGYN ATW+LEVT+ +QE + GV
Sbjct: 983 LFLMKRGGEEIYVGPLGRHSCHLINYFEGIEGVSKIKDGYNPATWMLEVTSSAQELSLGV 1042
Query: 266 DFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRWTK 325
+F+ IY+NSELY+R KA+I ELS AP SK L F TQYSQS T+ A WK W
Sbjct: 1043 NFATIYKNSELYRRNKAIIKELSTSAPGSKGLYFPTQYSQSFLTQCIACLWKQRLSYWRN 1102
Query: 326 -------------------------------QQHLFNVMVSMYTAVLFLLVQNAGSLQLV 354
QQ +FN SMY AV+FL QNA S+Q V
Sbjct: 1103 PPYTAVRFLFTTFIALMFGTMFWDLGSKTRTQQDIFNSAGSMYGAVVFLGTQNAASVQPV 1162
Query: 355 AAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFW 414
A+E T+FYRE A G YSA+PYA + + L Y+MIGFEWTAA FFW
Sbjct: 1163 VAIERTVFYRERAAGMYSALPYAYAQVLVEIPYIFAQAVVYGLLTYSMIGFEWTAAKFFW 1222
Query: 415 YLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRP--------F 466
Y+ M F YFT+YGMMA A++ IA IVSS+FY IWNLF GF++PR +
Sbjct: 1223 YIFFMYFTLMYFTYYGMMAVAVTPNHHIASIVSSAFYGIWNLFSGFIVPRTRMPVWWRWY 1282
Query: 467 VDNGEFQYGADGLLGISGILDLDFLHHSLEIYRTGQMKQFNNFFTNYFGFRHDFVGIVAV 526
+ GL+G S D + S E G + +F Y+G RHDF+G+VA
Sbjct: 1283 YWACPVSWTLYGLIG-SQFAD---IKDSFE----GGSQTVEDFVREYYGIRHDFLGVVAA 1334
Query: 527 VV 528
V+
Sbjct: 1335 VI 1336
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|41052474|dbj|BAD07484.1| PDR-type ABC transporter 2 [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 306/600 (51%), Positives = 375/600 (62%), Gaps = 80/600 (13%)
Query: 6 EAAIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQ------IGD-----LNSLSGAFRP 54
++ E+ N+NK+GMVL FEPH I+ +++VYSVDMPQ G+ L +SGAFRP
Sbjct: 459 DSITESQNNNKKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRP 518
Query: 55 G---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHS 105
G GAGKTTLMDVLAGRK GGYI +I +SGYP+KQETFARI GYCEQNDIHS
Sbjct: 519 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGDIKISGYPKKQETFARISGYCEQNDIHS 578
Query: 106 PHDTLYD---FTHCLY-----------MFIEEGMELVELNPFRQALF----------EQR 141
P+ T+Y+ ++ L MF++E MELVEL P R AL EQR
Sbjct: 579 PYVTVYESLVYSAWLRLPQNVDETTRKMFVDEVMELVELRPLRSALVGLPGVNGLSTEQR 638
Query: 142 KRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFY 201
KRLT+AVE VANPSII DEP SGLDARAA V+R VRNTVD GRTVVCTIHQPSIDIF
Sbjct: 639 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFE 698
Query: 202 SFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQER 261
+FDELFL+K+ GQEI VGPLG S HLI YFE GV+KIK+GYN ATW+LEVTA +QE
Sbjct: 699 AFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEM 758
Query: 262 AFGVDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQ 321
GVDF+D+Y+NS+LY+R KA+I+EL P P SK L F TQYSQS T+ A WK
Sbjct: 759 MLGVDFTDVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWTQCMACLWKQHWS 818
Query: 322 RW-------------------------------TKQQHLFNVMVSMYTAVLFLLVQNAGS 350
W +K Q L N M SMY AVLFL VQNA S
Sbjct: 819 YWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASS 878
Query: 351 LQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAA 410
+Q V AVE T+FYRE A G YSA+PYA + + + YAMIGFEW
Sbjct: 879 VQPVVAVERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVG 938
Query: 411 MFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDN- 469
FFWYL +M F YFTFYGMM+ A++ +A IV++ FY +WNLF GF++PRP +
Sbjct: 939 KFFWYLFIMFFTLLYFTFYGMMSVAVTPNQNVASIVAAFFYGVWNLFSGFIVPRPRMPVW 998
Query: 470 GEFQYGADGL-LGISGILDLDFLHHSLEIYRTGQMKQFNNFFTNYFGFRHDFVGIVAVVV 528
+ Y A+ + + G++ F + ++Q F YFGF+HDF+G+VA V+
Sbjct: 999 WRWYYWANPVAWTLYGLVASQFGDIQTTLSDNETVEQ---FLRRYFGFKHDFLGVVAAVL 1055
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455077|ref|XP_003597819.1| Pleiotropic drug resistance protein [Medicago truncatula] gi|355486867|gb|AES68070.1| Pleiotropic drug resistance protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 306/604 (50%), Positives = 372/604 (61%), Gaps = 84/604 (13%)
Query: 6 EAAIEANNHNKRGMVLLFEPHYISLNEIVYSVDMP-----------QIGDLNSLSGAFRP 54
++ E+++ K+GMVL FEPH I+ ++IVYSVDMP ++ L +SGAFRP
Sbjct: 789 DSVTESSHGKKKGMVLPFEPHSITFDDIVYSVDMPAEMKEQGVTEDRLVLLKGVSGAFRP 848
Query: 55 G---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHS 105
G GAGKTTLMDVLAGRK GGYI +I VSGYP+KQETFARI GYCEQNDIHS
Sbjct: 849 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGDIKVSGYPKKQETFARISGYCEQNDIHS 908
Query: 106 PHDTLYDF--------------THCLYMFIEEGMELVELNPFRQALF----------EQR 141
PH T+Y+ ++ MFI+E M+LVELN R +L EQR
Sbjct: 909 PHVTVYESLLYSAWLRLPSGVDSNTRKMFIDEVMDLVELNSLRNSLVGLPGVSGLSTEQR 968
Query: 142 KRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFY 201
KRLT+AVE VANPSII DEP SGLDARAA V+R VRNTVD GRTVVCTIHQPSIDIF
Sbjct: 969 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1028
Query: 202 SFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQER 261
+FDELFL+K+ GQEI VGPLG S HLI YFE I GVSKIKDGYN ATW+LEVT +QE
Sbjct: 1029 AFDELFLMKRGGQEIYVGPLGRHSTHLIKYFESIDGVSKIKDGYNPATWMLEVTTTAQEL 1088
Query: 262 AFGVDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQ 321
GVDF+D+Y+NS+LY+R K +I ELS PAP SK L F TQ+SQS + A WK Q
Sbjct: 1089 NLGVDFTDLYKNSDLYRRNKQLIQELSVPAPGSKDLHFPTQFSQSFLVQCQACLWK---Q 1145
Query: 322 RW----------------------------------TKQQHLFNVMVSMYTAVLFLLVQN 347
RW + +Q L N + SMYTAVLFL VQN
Sbjct: 1146 RWSYWRNPPYTAVRFFFTTFIGLMFGTMFWDLGGKHSSRQDLLNAVGSMYTAVLFLGVQN 1205
Query: 348 AGSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEW 407
+ S+Q V AVE T+FYRE A G YSA+PYA + ++ YAMIGF+W
Sbjct: 1206 SSSVQPVVAVERTVFYREKAAGMYSALPYAFSQILVELPYVFAQAVTYGAIVYAMIGFDW 1265
Query: 408 TAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFV 467
TA F WYL M F YFTFYGMMA A++ +A IV+++FY IWNLF GFV+PRP +
Sbjct: 1266 TAEKFLWYLFFMYFTLLYFTFYGMMAVAVTPNHHVASIVAAAFYAIWNLFSGFVVPRPSI 1325
Query: 468 DN--GEFQYGADGLLGISGILDLDFLHHSLEIYRTGQMKQFNNFFTNYFGFRHDFVGIVA 525
+ + I G++ F + + T K F ++FG +HDF+G A
Sbjct: 1326 PIWWRWYYWACPVAWTIYGLVASQFGDIT-TVMSTEGGKDVKTFLDDFFGIQHDFIGWCA 1384
Query: 526 VVVG 529
+VVG
Sbjct: 1385 LVVG 1388
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357510225|ref|XP_003625401.1| Pleiotropic drug resistance protein [Medicago truncatula] gi|355500416|gb|AES81619.1| Pleiotropic drug resistance protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 304/600 (50%), Positives = 372/600 (62%), Gaps = 82/600 (13%)
Query: 8 AIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQ--------IGD----LNSLSGAFRPG 55
A E N+ KRGMVL FEPH I+ +E+ YSVDMPQ + D L +SGAFRPG
Sbjct: 862 ASETNHSRKRGMVLPFEPHSITFDEVTYSVDMPQEMRRNLGVVEDKLVLLKGVSGAFRPG 921
Query: 56 ---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSP 106
GAGKTTLMDVL+GRK GGYI NIT+SG+P+KQETFARI GYCEQNDIHSP
Sbjct: 922 VLTALMGVTGAGKTTLMDVLSGRKTGGYIGGNITISGFPKKQETFARISGYCEQNDIHSP 981
Query: 107 HDTLYDFTHCLY----------------MFIEEGMELVELNPFRQALF----------EQ 140
+ T+Y+ LY MF+EE MELVEL P + AL EQ
Sbjct: 982 YVTVYE--SLLYSAWLRLSPDINAETRKMFVEEVMELVELKPLQNALVGLPGVNGLSTEQ 1039
Query: 141 RKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIF 200
RKRLT+AVE VANPSII DEP SGLDARAA V+R VRNTV+ GRTVVCTIHQPSIDIF
Sbjct: 1040 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIF 1099
Query: 201 YSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQE 260
SFDEL LLKQ GQEI VGPLG +S +LI+YFE I GVSKIKDGYN ATW+LEVT S+E
Sbjct: 1100 ESFDELLLLKQGGQEIYVGPLGHNSSNLINYFEGIHGVSKIKDGYNPATWMLEVTTSSKE 1159
Query: 261 RAFGVDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQ 320
R G+DF+++Y+NSELY+R KA+I ELS PAP SK L F++QYS+S T+ A WK
Sbjct: 1160 RELGIDFAEVYQNSELYRRNKALIKELSTPAPCSKDLYFASQYSRSFWTQCMACLWKQHW 1219
Query: 321 QRW-------------------------------TKQQHLFNVMVSMYTAVLFLLVQNAG 349
W K+Q LFN M SMY+AV+ + ++NA
Sbjct: 1220 SYWRNPEYNAIRFLYSTAVAVLFGSMFWDLGSKIEKEQDLFNAMGSMYSAVIVIGIKNAN 1279
Query: 350 SLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTA 409
S+Q V AVE T+FYRE A G YSA PYA + + + YAMIGFEW+
Sbjct: 1280 SVQPVVAVERTVFYRERAAGMYSAFPYAFAQVVIELPYVFVQAVVYGIIVYAMIGFEWSV 1339
Query: 410 AMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDN 469
F W L + F YFT+YG+M+ A++ I+IIVSS+FY+IWNLF GF++PRP +
Sbjct: 1340 VKFLWCLFFLFCTFLYFTYYGLMSVAMTPNNHISIIVSSAFYSIWNLFSGFIVPRPNIPV 1399
Query: 470 GEFQYGADGLLGIS--GILDLDFLHHSLEIYRTGQMKQFNNFFTNYFGFRHDFVGIVAVV 527
Y + S G++ + I + + F NYF F+HDF+G+VA+V
Sbjct: 1400 WWRWYSWANPIAWSLYGLVVSQYGDEKHNIETSDGRQTVEGFLKNYFDFKHDFLGVVALV 1459
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546579|ref|XP_002514349.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223546805|gb|EEF48303.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 311/599 (51%), Positives = 372/599 (62%), Gaps = 88/599 (14%)
Query: 11 ANNHNKRGMVLLFEPHYISLNEIVYSVDMPQ-----------IGDLNSLSGAFRPG---- 55
AN KRGMVL F+P I+ +EI Y+VDMPQ + L +SGAFRPG
Sbjct: 695 ANQERKRGMVLPFQPLSITFDEIKYAVDMPQEMKSQGITEDRLQLLKGVSGAFRPGVLTA 754
Query: 56 -----GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTL 110
GAGKTTLMDVLAGRK GGYI NIT+SGYP+KQETFARI GYCEQ DIHSPH T+
Sbjct: 755 LMGASGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQTDIHSPHVTI 814
Query: 111 YDFTHCLY----------------MFIEEGMELVELNPFRQAL----------FEQRKRL 144
Y+ LY MFIEE MELVELN R+AL EQRKRL
Sbjct: 815 YE--SLLYSAWLRLPTEVNSDTRKMFIEEVMELVELNSLREALVGLPGVNGLSIEQRKRL 872
Query: 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFD 204
T+AVE VANPSII DEP SGLDARAA V+R VRNTVD GRTVVCTIHQPSIDIF +FD
Sbjct: 873 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFD 932
Query: 205 ELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFG 264
ELFLLK+ GQEI VGP+G + HLI YFE+I GV KIKDGYN ATW+LEVT +QE A G
Sbjct: 933 ELFLLKRGGQEIYVGPVGRHAYHLIRYFEEIEGVPKIKDGYNPATWMLEVTTAAQEAALG 992
Query: 265 VDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRW- 323
+DF+DIY+NSEL++R KA+I ELS+P P SK L F TQYSQ T+ WK W
Sbjct: 993 IDFNDIYKNSELHRRNKALIKELSRPPPGSKDLYFPTQYSQPFLTQCMTCLWKQHLSYWR 1052
Query: 324 ------------------------------TKQQHLFNVMVSMYTAVLFLLVQNAGSLQL 353
++QQ ++N M SMY AVLFL NA S+Q
Sbjct: 1053 NPTYSAVRLLFTTFIALMMGTIFWNLGPKRSRQQDIYNAMGSMYAAVLFLGFLNASSVQP 1112
Query: 354 VAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFF 413
V A+E T+FYRE A G YSA+PYA + + + YAMIGFEWT++ FF
Sbjct: 1113 VVAIERTVFYRERAAGMYSALPYAFGQVVIELPYILVQTIIYGVIVYAMIGFEWTSSKFF 1172
Query: 414 WYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDN-GEF 472
WYL M F F YFTFYGMM A++ IA IV+++FY IWNLF GFV+PR + +
Sbjct: 1173 WYLFFMYFTFLYFTFYGMMTVAVTPNHNIAAIVATAFYAIWNLFSGFVVPRTRIPVWWRW 1232
Query: 473 QYGADGLL-GISGILDLDF--LHHSLEIYRTGQMKQFNNFFTNYFGFRHDFVGIVAVVV 528
Y A + + G++ + ++ L+ T + NF NYFGF+H +VGIVAVV+
Sbjct: 1233 NYWACPVAWTLYGLVASQYGDVNEQLDSGETVE-----NFVRNYFGFQHAYVGIVAVVL 1286
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357455075|ref|XP_003597818.1| Pleiotropic drug resistance protein [Medicago truncatula] gi|355486866|gb|AES68069.1| Pleiotropic drug resistance protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 306/604 (50%), Positives = 372/604 (61%), Gaps = 84/604 (13%)
Query: 6 EAAIEANNHNKRGMVLLFEPHYISLNEIVYSVDMP-----------QIGDLNSLSGAFRP 54
++ E+++ K+GMVL FEPH I+ ++IVYSVDMP ++ L +SGAFRP
Sbjct: 806 DSVTESSHGKKKGMVLPFEPHSITFDDIVYSVDMPVEMKEQGVREDRLVLLKGVSGAFRP 865
Query: 55 G---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHS 105
G GAGKTTLMDVLAGRK GGYI +I VSGYP+KQETFARI GYCEQNDIHS
Sbjct: 866 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGDIKVSGYPKKQETFARISGYCEQNDIHS 925
Query: 106 PHDTLYDF--------------THCLYMFIEEGMELVELNPFRQALF----------EQR 141
PH T+Y+ ++ MFI+E M+LVELN R +L EQR
Sbjct: 926 PHVTVYESLLYSAWLRLPSGVDSNTRKMFIDEVMDLVELNSLRNSLVGLPGVSGLSTEQR 985
Query: 142 KRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFY 201
KRLT+AVE VANPSII DEP SGLDARAA V+R VRNTVD GRTVVCTIHQPSIDIF
Sbjct: 986 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1045
Query: 202 SFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQER 261
+FDELFL+K+ GQEI VGPLG S HLI YFE I GVSKIKDGYN ATW+LEVT +QE
Sbjct: 1046 AFDELFLMKRGGQEIYVGPLGRHSTHLIKYFESIDGVSKIKDGYNPATWMLEVTTTAQEL 1105
Query: 262 AFGVDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQ 321
GVDF+D+Y+NS+LY+R K +I ELS PAP SK L F TQ+SQS + A WK Q
Sbjct: 1106 NLGVDFTDLYKNSDLYRRNKQLIQELSVPAPGSKDLHFPTQFSQSFLVQCQACLWK---Q 1162
Query: 322 RW----------------------------------TKQQHLFNVMVSMYTAVLFLLVQN 347
RW + +Q L N + SMYTAVLFL VQN
Sbjct: 1163 RWSYWRNPPYTAVRFFFTTFIGLMFGTMFWDLGGKHSSRQDLLNAVGSMYTAVLFLGVQN 1222
Query: 348 AGSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEW 407
+ S+Q V AVE T+FYRE A G YSA+PYA + + + YAMIGF+W
Sbjct: 1223 SSSVQPVVAVERTVFYREKAAGMYSALPYAFSQILVELPYVFAQAVIYGVIVYAMIGFDW 1282
Query: 408 TAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFV 467
TA F WYL M F YFTFYGMMA A++ +A IV+++FY IWNLF GFV+PRP +
Sbjct: 1283 TAEKFLWYLFFMYFTLLYFTFYGMMAVAVTPNHHVASIVAAAFYAIWNLFSGFVVPRPSI 1342
Query: 468 DN--GEFQYGADGLLGISGILDLDFLHHSLEIYRTGQMKQFNNFFTNYFGFRHDFVGIVA 525
+ + I G++ F + + T K F ++FG +HDF+G A
Sbjct: 1343 PIWWRWYYWACPVAWTIYGLVASQFGDIT-TVMSTEGGKDVKTFLDDFFGIQHDFIGWCA 1401
Query: 526 VVVG 529
+VVG
Sbjct: 1402 LVVG 1405
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 531 | ||||||
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.421 | 0.157 | 0.610 | 1.8e-123 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.427 | 0.156 | 0.533 | 2.4e-106 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.444 | 0.160 | 0.478 | 3.7e-96 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.418 | 0.156 | 0.510 | 5.4e-95 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.419 | 0.156 | 0.483 | 1e-93 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.549 | 0.200 | 0.477 | 6e-85 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.421 | 0.157 | 0.525 | 3.8e-82 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.421 | 0.155 | 0.5 | 2.5e-74 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.419 | 0.153 | 0.468 | 9.8e-69 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.433 | 0.162 | 0.462 | 5.8e-51 |
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 683 (245.5 bits), Expect = 1.8e-123, Sum P(3) = 1.8e-123
Identities = 146/239 (61%), Positives = 170/239 (71%)
Query: 119 MFIEEGMELVELNPFRQALF----------EQRKRLTVAVEFVANPSIISRDEPISGLDA 168
+FIEE MELVEL P RQAL EQRKRLT+AVE VANPSII DEP SGLDA
Sbjct: 950 IFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1009
Query: 169 RAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHL 228
RAA V+R VRNTVD GRTVVCTIHQPSIDIF +FDELFLLK+ G+EI VGPLG S HL
Sbjct: 1010 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHL 1069
Query: 229 ISYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDIYRNSELYKRAKAVITELS 288
I+YFE I G++KI +GYN ATW+LEV+ SQE A GVDF+ +Y+NSELYKR K +I ELS
Sbjct: 1070 INYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELS 1129
Query: 289 KPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRW-----TKQQHLFNVMVSMYTAVLF 342
+PAP SK L F TQYSQS T+ A WK W T + LF + +++ +F
Sbjct: 1130 QPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMF 1188
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 588 (212.0 bits), Expect = 2.4e-106, Sum P(4) = 2.4e-106
Identities = 127/238 (53%), Positives = 156/238 (65%)
Query: 119 MFIEEGMELVELNPFRQALF----------EQRKRLTVAVEFVANPSIISRDEPISGLDA 168
+F+EE MELVEL P R ++ EQRKRLT+AVE VANPSII DEP SGLDA
Sbjct: 978 LFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1037
Query: 169 RAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHL 228
RAA V+R VRNTVD GRTVVCTIHQPSIDIF SFDEL L+K+ GQ I G LG S L
Sbjct: 1038 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQKL 1097
Query: 229 ISYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDIYRNSELYKRAKAVITELS 288
+ YFE + GV KI DGYN ATW+L+VT S E +DF+ I+ NS LY+R + +I +LS
Sbjct: 1098 VEYFEAVEGVPKINDGYNPATWMLDVTTPSMESQMSLDFAQIFSNSSLYRRNQELIKDLS 1157
Query: 289 KPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRWTKQQH-LFNVMVSMYTAVLFLLV 345
P P SK + F T+Y+QS T+ A WK W Q+ ++++ VLF L+
Sbjct: 1158 TPPPGSKDVYFKTKYAQSFSTQTKACFWKQYWSYWRHPQYNAIRFLMTVVIGVLFGLI 1215
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 3.7e-96, Sum P(3) = 3.7e-96
Identities = 122/255 (47%), Positives = 161/255 (63%)
Query: 119 MFIEEGMELVELNPFRQALF----------EQRKRLTVAVEFVANPSIISRDEPISGLDA 168
MF+++ MELVEL+ R ++ EQRKRLT+AVE VANPSII DEP SGLDA
Sbjct: 992 MFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1051
Query: 169 RAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHL 228
RAA V+R VRNTVD GRTVVCTIHQPSIDIF +FDEL L+K+ GQ I GPLG +S +
Sbjct: 1052 RAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSHKV 1111
Query: 229 ISYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDIYRNSELYKRAKAVITELS 288
+ YFE GVSKI + YN ATW+LE ++L+ E VDF+++Y S L++R KA++ ELS
Sbjct: 1112 VEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRNKALVKELS 1171
Query: 289 KPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRWTKQQH-----LFNVMVSMYTAVLFL 343
P + L F+TQ+SQ+ + + WK W + +F + S+ +F
Sbjct: 1172 VPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLLIGTVFW 1231
Query: 344 LV----QNAGSLQLV 354
+ NAG L +V
Sbjct: 1232 QIGGNRSNAGDLTMV 1246
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 5.4e-95, Sum P(3) = 5.4e-95
Identities = 119/233 (51%), Positives = 154/233 (66%)
Query: 120 FIEEGMELVELNPFRQALF----------EQRKRLTVAVEFVANPSIISRDEPISGLDAR 169
F++E MELVEL + A+ EQRKRLT+AVE VANPSII DEP SGLDAR
Sbjct: 940 FVDEVMELVELESLKDAVVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 999
Query: 170 AATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLI 229
AA V+R VRNTVD GRTVVCTIHQPSIDIF +FDEL LLK+ GQ I GPLG +S +I
Sbjct: 1000 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYAGPLGQNSHKII 1059
Query: 230 SYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDIYRNSELYKRAKAVITELSK 289
YF+ I GV KIK+ YN ATW+LEV++++ E +DF++ Y+ S LY++ K ++ ELS
Sbjct: 1060 EYFQAIHGVPKIKEKYNPATWMLEVSSMAAEAKLEIDFAEHYKTSSLYQQNKNLVKELST 1119
Query: 290 PAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRW-TKQQHLFNVMVSMYTAVL 341
P + L FST++SQS+ + + WK W T +L ++ AV+
Sbjct: 1120 PPQGASDLYFSTRFSQSLLGQFKSCLWKQWITYWRTPDYNLARFFFTLAAAVM 1172
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 517 (187.1 bits), Expect = 1.0e-93, Sum P(4) = 1.0e-93
Identities = 114/236 (48%), Positives = 153/236 (64%)
Query: 120 FIEEGMELVELNPFRQALF----------EQRKRLTVAVEFVANPSIISRDEPISGLDAR 169
F+E+ M LVEL+ R AL EQRKRLT+AVE VANPSII DEP SGLDAR
Sbjct: 952 FVEQVMRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1011
Query: 170 AATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLI 229
AA V+R VRNTVD GRTVVCTIHQPSIDIF +FDEL L+K+ GQ I G LG S L+
Sbjct: 1012 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYGGKLGTHSQVLV 1071
Query: 230 SYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDIYRNSELYKRAKAVITELSK 289
YF+ I GV I GYN ATW+LEVT + E + ++F+D+Y+ S+ ++ +A I +LS
Sbjct: 1072 DYFQGINGVPPISSGYNPATWMLEVTTPALEEKYNMEFADLYKKSDQFREVEANIKQLSV 1131
Query: 290 PAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRWTKQQHLFNVMVSMYTAVL-FLL 344
P S+ + F+++YSQ+ ++ WK W + +N++ ++T + F+L
Sbjct: 1132 PPEGSEPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPE--YNLVRLVFTTIAAFIL 1185
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 588 (212.0 bits), Expect = 6.0e-85, Sum P(3) = 6.0e-85
Identities = 149/312 (47%), Positives = 183/312 (58%)
Query: 57 AGKTTLMDVLAGRKPGGYITRNIT---VSGYPEKQETFA-RILGYCEQNDIHSPHDTLY- 111
AG+ T V GY T VSGY E+ + + + Y ++ I+S L
Sbjct: 911 AGRKTGGYVEGSINISGYPKNQATFARVSGYCEQNDIHSPHVTVY--ESLIYSAWLRLSA 968
Query: 112 DF-THCLYMFIEEGMELVELNPFRQALF----------EQRKRLTVAVEFVANPSIISRD 160
D T MF+EE MELVEL P R ++ EQRKRLT+AVE VANPSII D
Sbjct: 969 DIDTKTREMFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMD 1028
Query: 161 EPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220
EP SGLDARAA V+R VRNTVD GRTVVCTIHQPSIDIF SFDEL L+K+ GQ I G
Sbjct: 1029 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGT 1088
Query: 221 LGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDIYRNSELYKRA 280
LG S L+ YFE I GV KIKDGYN ATW+L+VT S E VDF+ I+ NS + +R
Sbjct: 1089 LGHHSQKLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSMESQMSVDFAQIFVNSSVNRRN 1148
Query: 281 KAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRWTKQQH-LFNVMVSMYTA 339
+ +I ELS P P S L F T+Y+Q T+ A WK+ W Q+ ++++
Sbjct: 1149 QELIKELSTPPPGSNDLYFRTKYAQPFSTQTKACFWKMYWSNWRYPQYNAIRFLMTVVIG 1208
Query: 340 VLF-LLVQNAGS 350
VLF LL G+
Sbjct: 1209 VLFGLLFWQTGT 1220
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 578 (208.5 bits), Expect = 3.8e-82, Sum P(3) = 3.8e-82
Identities = 124/236 (52%), Positives = 155/236 (65%)
Query: 120 FIEEGMELVELNPFRQALF----------EQRKRLTVAVEFVANPSIISRDEPISGLDAR 169
F+ E MELVEL AL EQRKRLT+AVE VANPSI+ DEP SGLDAR
Sbjct: 944 FVHEVMELVELTSLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1003
Query: 170 AATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLI 229
AA V+R VRN V+ GRT+VCTIHQPSIDIF SFDEL +K+ G+ I GPLG S LI
Sbjct: 1004 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELI 1063
Query: 230 SYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDIYRNSELYKRAKAVITELSK 289
YFE I GV KIK G+N A W+L+VTA ++E GVDF++IYRNS L +R K +I LSK
Sbjct: 1064 KYFESIEGVQKIKPGHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSK 1123
Query: 290 PAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRWTKQQHLFNVMVSMYTAVLFLLV 345
P+ ++K + F T+YSQS+ ++ A WK W Q + + YT V+ L++
Sbjct: 1124 PSNIAKEIEFPTRYSQSLYSQFVACLWKQNLSYWRNPQ--YTAVRFFYTVVISLML 1177
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 532 (192.3 bits), Expect = 2.5e-74, Sum P(3) = 2.5e-74
Identities = 119/238 (50%), Positives = 157/238 (65%)
Query: 119 MFIEEGMELVELNPFRQALF----------EQRKRLTVAVEFVANPSIISRDEPISGLDA 168
MF+++ MELVEL R A+ EQRKRLT+AVE VANPSII DEP SGLDA
Sbjct: 965 MFVDQVMELVELVDLRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1024
Query: 169 RAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHL 228
RAA V+R VRNTVD GRTVVCTIHQPSIDIF +FDEL L+K+ G I GPLG +S +
Sbjct: 1025 RAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKV 1084
Query: 229 ISYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDIYRNSELYKRAKAVITELS 288
+ YFE GV KI + YN ATW+LE ++L+ E GVDF+++Y+ S L +R KA++ ELS
Sbjct: 1085 VEYFESFPGVPKIPEKYNPATWMLEASSLAAELKLGVDFAELYKASALCQRNKALVQELS 1144
Query: 289 KPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRWTKQQHL-FNVMVSMYTAVLFLLV 345
P + L F+TQ+SQ+ + + WK Q WT + +N++ ++T L++
Sbjct: 1145 VPPQGATDLYFATQFSQNTWGQFKSCLWK---QWWTYWRSPDYNLVRFIFTLATSLMI 1199
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 516 (186.7 bits), Expect = 9.8e-69, Sum P(2) = 9.8e-69
Identities = 110/235 (46%), Positives = 151/235 (64%)
Query: 120 FIEEGMELVELNPFRQALF----------EQRKRLTVAVEFVANPSIISRDEPISGLDAR 169
F+++ +E +EL+ + +L EQRKRLT+AVE VANPSII DEP +GLDAR
Sbjct: 976 FVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1035
Query: 170 AATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLI 229
AA V+R V+N D GRT+VCTIHQPSIDIF +FDEL LLK+ G+ I GPLG S H+I
Sbjct: 1036 AAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHII 1095
Query: 230 SYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDIYRNSELYKRAKAVITELSK 289
YFE + + KIKD +N ATW+L+V++ S E GVDF+ IY +S LYKR ++ +LS+
Sbjct: 1096 EYFESVPEIPKIKDNHNPATWMLDVSSQSVEIELGVDFAKIYHDSALYKRNSELVKQLSQ 1155
Query: 290 PAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRWTKQQHLFNVMVSMYTAVLFLL 344
P S ++F ++QS + + WK+ W +N+M M+T V L+
Sbjct: 1156 PDSGSSDIQFKRTFAQSWWGQFKSILWKMNLSYWRSPS--YNLMRMMHTLVSSLI 1208
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 5.8e-51, Sum P(2) = 5.8e-51
Identities = 112/242 (46%), Positives = 150/242 (61%)
Query: 120 FIEEGMELVELNPFRQALF----------EQRKRLTVAVEFVANPSIISRDEPISGLDAR 169
F+++ +E +EL + AL EQRKRLTVAVE VANPSII DEP +GLDAR
Sbjct: 939 FVKQVLETIELEEIKDALVGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDAR 998
Query: 170 AATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLI 229
AA V+R V+N + GRT+VCTIHQPSI IF +FDEL LLK+ G+ I GPLG S +I
Sbjct: 999 AAAIVMRAVKNVAETGRTIVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVI 1058
Query: 230 SYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDIYRNSELYKRAKAVITELSK 289
YF+ I GV+KI+D YN ATW+LEVT+ S E +DF+ IY S+LYK ++ ELSK
Sbjct: 1059 EYFQNIPGVAKIRDKYNPATWMLEVTSESVETELDMDFAKIYNESDLYKNNSELVKELSK 1118
Query: 290 PAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRWTKQQH-LFNVMVSMYTAVLF-LLVQN 347
P S L F ++Q+ + + WK++ W + L + + ++ +F LL N
Sbjct: 1119 PDHGSSDLHFKRTFAQNWWEQFKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWN 1178
Query: 348 AG 349
G
Sbjct: 1179 QG 1180
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00031482 | hypothetical protein (799 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 531 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-164 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-97 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-65 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-47 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-32 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-30 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-23 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-20 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-17 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 8e-14 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-13 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 9e-13 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-12 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-12 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-12 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 7e-11 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-10 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-10 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-10 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-09 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-09 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-09 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 8e-09 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-08 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-08 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 8e-08 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-07 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-07 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-07 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-06 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-06 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-06 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-06 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-06 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-06 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-06 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-06 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-06 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 8e-06 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-05 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-05 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-05 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-05 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-05 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 5e-05 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 5e-05 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 6e-05 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-05 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 6e-05 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 7e-05 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 9e-05 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-04 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-04 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-04 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-04 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-04 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-04 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-04 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 4e-04 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-04 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 5e-04 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 5e-04 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 6e-04 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-04 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 6e-04 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-04 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 7e-04 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 8e-04 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 9e-04 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 0.001 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 0.001 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 0.002 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 0.002 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 0.002 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 0.002 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 0.003 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 0.003 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 0.003 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 0.003 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 0.003 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 0.004 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 0.004 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 502 bits (1294), Expect = e-164
Identities = 256/548 (46%), Positives = 330/548 (60%), Gaps = 99/548 (18%)
Query: 6 EAAIEANN--HNKRGMVLLFEPHYISLNEIVYSVDMP-----------QIGDLNSLSGAF 52
++++EA N KRGMVL F P +S +++ Y VDMP ++ L ++GAF
Sbjct: 844 DSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAF 903
Query: 53 RPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDI 103
RPG GAGKTTLMDVLAGRK GGYI +I +SG+P+KQETFARI GYCEQNDI
Sbjct: 904 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDI 963
Query: 104 HSPHDTLYD---FTHCL-----------YMFIEEGMELVELNPFRQALF----------E 139
HSP T+ + ++ L MF++E MELVEL+ + A+ E
Sbjct: 964 HSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDI 199
QRKRLT+AVE VANPSII DEP SGLDARAA V+R VRNTVD GRTVVCTIHQPSIDI
Sbjct: 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1083
Query: 200 FYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQ 259
F +FDEL L+K+ GQ I GPLG +S +I YFE I GV KIK+ YN ATW+LEV++L+
Sbjct: 1084 FEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAA 1143
Query: 260 ERAFGVDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLA 319
E G+DF++ Y++S LY+R KA++ ELS P P + L F+TQYSQS + + WK
Sbjct: 1144 EVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWK-- 1201
Query: 320 QQRWT----------------------------------KQQHLFNVMVSMYTAVLFLLV 345
Q WT L V+ +MY AVLF+ +
Sbjct: 1202 -QWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGI 1260
Query: 346 QNAGSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLS--------CNL 397
N ++Q + AVE T+FYRE A G YSA+PYA+ + C++ L
Sbjct: 1261 NNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQ--------VVCEIPYVLIQTTYYTL 1312
Query: 398 SFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLF 457
YAM+ FEWTAA FFW+ + F F YFT+YGMM +L+ Q+A I +++FY ++NLF
Sbjct: 1313 IVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLF 1372
Query: 458 PGFVIPRP 465
GF IPRP
Sbjct: 1373 SGFFIPRP 1380
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 320 bits (823), Expect = 5e-97
Identities = 145/563 (25%), Positives = 232/563 (41%), Gaps = 112/563 (19%)
Query: 6 EAAIEANNHN--KRGMVLLFEPHYISLNEIVYSVDMP-QIGD------------------ 44
A+N N + G VL +++ DM + G+
Sbjct: 716 AGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEK 775
Query: 45 ---LNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFA 92
LN++ G +PG GAGKTTL++VLA R G IT + +F
Sbjct: 776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQ 835
Query: 93 RILGYCEQNDIHSPHDTLYD---FTHCL-----------YMFIEEGMELVELNPFRQALF 138
R +GY +Q D+H P T+ + F+ L ++EE ++L+E+ + A+
Sbjct: 836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVV 895
Query: 139 ---------EQRKRLTVAVEFVANP-SIISRDEPISGLDARAATTVIRMVRNTVDMGRTV 188
EQRKRLT+ VE VA P ++ DEP SGLD++ A ++ +++R D G+ +
Sbjct: 896 GVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAI 955
Query: 189 VCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLA 248
+CTIHQPS +F FD L LL++ GQ + G LG +S +I+YFEK G K + N A
Sbjct: 956 LCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEK-HGAPKCPEDANPA 1014
Query: 249 TWLLEVTALSQERAFGVDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFST---QYSQ 305
W+LEV + D+ +++RNS Y+ K + L ++ +Y+
Sbjct: 1015 EWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAA 1074
Query: 306 SICTKLFAWSWKLAQQRW----------------------------TKQQHLFNVMVSMY 337
S+ + W+ QQ W T Q L N M +++
Sbjct: 1075 SLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVF 1134
Query: 338 TAVLFLLVQNAGSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNL 397
A + L A RE T+S + + + T ++ NL
Sbjct: 1135 MATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQI--------TVEIPYNL 1186
Query: 398 --------SFYAMIGFEWTAA-------MFFWYLLLMLFIFFYFTFYGMMAEALSAKPQI 442
+Y +GF W A+ + LL F YF+ G M + +
Sbjct: 1187 VAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADN 1246
Query: 443 AIIVSSSFYTIWNLFPGFVIPRP 465
A +++S +T+ F G + P
Sbjct: 1247 AAVLASLLFTMCLSFCGVLAPPS 1269
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 2e-65
Identities = 85/208 (40%), Positives = 116/208 (55%), Gaps = 29/208 (13%)
Query: 25 PHYISLNEIVYSVDMP----QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP 71
++ + Y+V + Q+ LN++SG +PG GAGKTTL+DVLAGRK
Sbjct: 1 GSVLTWKNLNYTVPVKGGKRQL--LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT 58
Query: 72 GGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELN 131
G IT I ++G P + F R GY EQ D+HSP+ T + E + L
Sbjct: 59 AGVITGEILINGRP-LDKNFQRSTGYVEQQDVHSPNLT-----------VREALRFSALL 106
Query: 132 PFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCT 191
R EQRKRLT+ VE A PSI+ DEP SGLD++AA ++R ++ D G+ ++CT
Sbjct: 107 --RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCT 164
Query: 192 IHQPSIDIFYSFDELFLLKQVGQEISVG 219
IHQPS IF FD L LLK+ G+ + G
Sbjct: 165 IHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 2e-47
Identities = 69/201 (34%), Positives = 108/201 (53%), Gaps = 32/201 (15%)
Query: 27 YISLNEIVYSVDMPQIGD----LNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG 73
+S + +V L ++SG +PG GAGK+TL++ LAGR+ G
Sbjct: 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL 62
Query: 74 YITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLY---DFTHCLYMFIEEGMELVEL 130
++ + ++G P + +F +I+GY Q+DI P T+ F L
Sbjct: 63 GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL------------- 109
Query: 131 NPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVC 190
R +RKR+++A+E V+NPS++ DEP SGLD+ +A V+ ++R D GRT++C
Sbjct: 110 ---RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIIC 166
Query: 191 TIHQPSIDIFYSFDELFLLKQ 211
+IHQPS +IF FD+L LL Q
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQ 187
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 1e-32
Identities = 116/491 (23%), Positives = 199/491 (40%), Gaps = 82/491 (16%)
Query: 45 LNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGY-ITRNITVSGYPEKQETFARI 94
L ++SG +PG GAGKTTLM+ LA R P G + ++ ++G P + I
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAI 100
Query: 95 LGYCEQNDIHSPHDTLYD---FTHCLYM-----------FIEEGMELVELNPFRQALFE- 139
Y +Q+D+ P T+ + F L M ++E ++ + L
Sbjct: 101 SAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGV 160
Query: 140 ----------QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVV 189
+RKRL A E + +P ++ DEP SGLD+ A +V+++++ G+T++
Sbjct: 161 PGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTII 220
Query: 190 CTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLAT 249
CTIHQPS ++F FD++ L+ + G+ +G P + +F G + YN A
Sbjct: 221 CTIHQPSSELFELFDKIILMAE-GRVAYLGS--PD--QAVPFFSD-LGH-PCPENYNPAD 273
Query: 250 WLLEVTALSQER-------------AFGVDFSDIYRNSELYKRAKAVITE-LSKPAPVSK 295
+ ++V A+ +F V SDI R+ + + L K + +
Sbjct: 274 FYVQVLAVIPGSENESRERIEKICDSFAV--SDIGRDMLVNTNLWSGKAGGLVKDSENME 331
Query: 296 SLRF-STQYSQSICTKLFAWSWKLAQQRWTKQQHLFNVMVSMYTAVLFLLVQNA------ 348
+ + ++ ++Q +W L K + + +M ++ +++L
Sbjct: 332 GIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQN 391
Query: 349 --GSL---------QLVAAV------EWTIFYRESALGTYSAMPYALRKNKFRASNSNTC 391
G+L Q V V E +F RE+ G Y Y L K
Sbjct: 392 INGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIIL 451
Query: 392 KLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFY 451
Y MIG A F +L L+ + T +G + + +A+ V F
Sbjct: 452 PALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFV 511
Query: 452 TIWNLFPGFVI 462
+ LF GF I
Sbjct: 512 IPFLLFGGFFI 522
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 4e-30
Identities = 57/197 (28%), Positives = 89/197 (45%), Gaps = 34/197 (17%)
Query: 45 LNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITR-NITVSGYPEKQETFARI 94
LN +S G G+GKTTL+D ++GR GG T I +G P K + F +
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82
Query: 95 LGYCEQNDIHSPHDTLYDFTHCLYMFI-----------------EEGMELVELNPFRQAL 137
+ Y Q+DI P T+ + Y I + + + L L
Sbjct: 83 VAYVRQDDILLPGLTVRETLT--YTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL 140
Query: 138 FEQ-----RKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTI 192
+ R+R+++AV+ + +P ++ DEP SGLD+ A ++ + R V+ TI
Sbjct: 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTI 200
Query: 193 HQPSIDIFYSFDELFLL 209
HQP D+F FD + LL
Sbjct: 201 HQPRSDLFRLFDRILLL 217
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 57/234 (24%), Positives = 89/234 (38%), Gaps = 40/234 (17%)
Query: 45 LNSLSGAFRPG---------GAGKTTLMDVLAGR-KP-GGYITRNITVSGYP--EKQETF 91
L+ +S PG GAGKTTL+ +LAG KP G I V GY ++
Sbjct: 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG----EILVLGYDVVKEPAKV 76
Query: 92 ARILGYCEQNDIH----SPHDTLYDFTHCLYMF--------IEEGMELVELNPFRQALFE 139
R +GY Q + + L +F LY IEE +EL L
Sbjct: 77 RRRIGYVPQEPSLYPELTVRENL-EFFARLYGLSKEEAEERIEELLELFGLEDKANKKVR 135
Query: 140 -----QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQ 194
++RL++A+ + +P ++ DEP SGLD + + ++R G +
Sbjct: 136 TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTH 195
Query: 195 PSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLA 248
+ D + +L G+ I+ G L F + + LA
Sbjct: 196 ILEEAEELCDRVIILND-GKIIAEGTP----EELKEKFGGKGVIELEPERLELA 244
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 2e-20
Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 29/189 (15%)
Query: 45 LNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGY-ITRNITVSGYPEKQ--ETFA 92
L SG +PG G+G +TL+ LA R G + +I +G P K+ E +
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82
Query: 93 RILGYCEQNDIHSPH----DTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAV 148
+ Y + D+H P +TL C +G E V R +RKR+++A
Sbjct: 83 GEIIYVSEEDVHFPTLTVRETLDFALRC------KGNEFV-----RGISGGERKRVSIAE 131
Query: 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELF 207
V+ S++ D GLD+ A +++ +R D + T +++Q S +I+ FD++
Sbjct: 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVL 191
Query: 208 LLKQVGQEI 216
+L + G++I
Sbjct: 192 VLYE-GRQI 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 3e-17
Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 30/206 (14%)
Query: 54 PGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYD- 112
P G+GK+TL++ LAGR G T I + ++ R G+ Q+DI PH T+ +
Sbjct: 102 PSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPHLTVRET 160
Query: 113 FTHCLYMFIEEGME-----------LVEL-----------NPF-RQALFEQRKRLTVAVE 149
C + + + + + EL N F R +RKR+++A E
Sbjct: 161 LVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 220
Query: 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209
+ NPS++ DEP SGLDA AA ++ + + G+T+V ++HQPS ++ FD + +L
Sbjct: 221 MLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVL 280
Query: 210 KQVGQEISVGPLGPSSIHLISYFEKI 235
+ G+ + G + ++YFE +
Sbjct: 281 SE-GRCLFFGKGSDA----MAYFESV 301
|
Length = 659 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 8e-14
Identities = 43/171 (25%), Positives = 70/171 (40%), Gaps = 42/171 (24%)
Query: 43 GDLNSLSGAFRPGGAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQETFARILGYCEQ 100
G++ +L G P G+GK+TL+ +AG + G I + +E RI GY Q
Sbjct: 25 GEIVALVG---PNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRI-GYVPQ 80
Query: 101 NDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRD 160
+ G QR+R+ +A + NP ++ D
Sbjct: 81 --------------------LSGG---------------QRQRVALARALLLNPDLLLLD 105
Query: 161 EPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211
EP SGLD + ++ ++R + GRTV+ H P + D + +LK
Sbjct: 106 EPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKD 155
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 4e-13
Identities = 50/193 (25%), Positives = 78/193 (40%), Gaps = 45/193 (23%)
Query: 45 LNSLSGAFRPG---------GAGKTTLMDVLAG-RKP-GGYIT-RNITVSGYPEKQETFA 92
L+ LS + G GAGK+TL+ LAG KP G I ++ K+ A
Sbjct: 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE--LA 72
Query: 93 RILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFE-----QRKRLTVA 147
R + Y Q +EL+ L F +R+R+ +A
Sbjct: 73 RKIAYVPQA-----------------------LELLGLAHLADRPFNELSGGERQRVLLA 109
Query: 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDEL 206
P I+ DEP S LD ++ ++R G+TVV +H ++ Y+ D +
Sbjct: 110 RALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYA-DRV 168
Query: 207 FLLKQVGQEISVG 219
LLK G+ ++ G
Sbjct: 169 ILLKD-GRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 9e-13
Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 54/188 (28%)
Query: 45 LNSLSGAFRPG---------GAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQETFA- 92
++ LS G GAGKTT + +L G R G ++GY + + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAA 73
Query: 93 -RILGYCEQNDIHSPHDTLYDF---THCLYMF--------------IEEGMELVELNPFR 134
+ LGYC Q D L+D L + +E + ++ L
Sbjct: 74 RQSLGYCPQ------FDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA 127
Query: 135 QALFE-----QRKRLTVAVEFVANPSIISRDEPISGLDARAA----TTVIRMVRNTVDMG 185
+++L++A+ + PS++ DEP SGLD + ++ + +
Sbjct: 128 NKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKG----- 182
Query: 186 RTVVCTIH 193
R+++ T H
Sbjct: 183 RSIILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 30/193 (15%)
Query: 43 GDLNSLSGAFRPGGAGKTTLMDVLAG-RKP-GGYIT-RNITVSGYPEKQETFARILGYCE 99
G++ + G P G+GK+TL+ LAG KP G + ++ K+ A+ L Y
Sbjct: 28 GEITGILG---PNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE--LAKKLAYVP 82
Query: 100 QNDIHSPHDTLYD------FTHCLYMF---------IEEGMELVELNPFRQALFE----- 139
Q+ T+Y+ + H +EE +EL+ L +
Sbjct: 83 QSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGG 142
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRN-TVDMGRTVVCTIHQPSID 198
+R+R+ +A I+ DEP S LD V+ ++R+ + G TVV +H ++
Sbjct: 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLA 202
Query: 199 IFYSFDELFLLKQ 211
Y+ D L LLK
Sbjct: 203 ARYA-DHLILLKD 214
|
Length = 258 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-12
Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 2/142 (1%)
Query: 324 TKQQHLFNVMVSMYTAVLFLLVQNAGSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKF 383
N ++ ++LF + + V E + RE A YS Y L K
Sbjct: 44 DTSLGGLNRPGLLFFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILV 103
Query: 384 RASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIA 443
S + L Y M+G + FF +LL++L + G+ AL+ + A
Sbjct: 104 ELPISLLQAIIFLLIVYFMVGLPVSR--FFLFLLVLLLTALAASGLGLFIAALAPSFEDA 161
Query: 444 IIVSSSFYTIWNLFPGFVIPRP 465
+ L GF IP
Sbjct: 162 SQIGPLLLLPLLLLSGFFIPVD 183
|
Length = 210 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 3e-12
Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 42/199 (21%)
Query: 45 LNSLSGAFRPG--------GAGKTTLMDVLAGRKP--GGYITRN-ITVSGYPEKQETFAR 93
L+ +S PG GAGKTTLM +LA P G I + V P+K R
Sbjct: 16 LDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK---LRR 72
Query: 94 ILGYCEQNDIHSPHDTLYDFTHCLYM-------------FIEEGMELVELNPFRQALFE- 139
+GY Q P+ T+ +F Y+ ++E +ELV L +
Sbjct: 73 RIGYLPQEFGVYPNFTVREFLD--YIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGS 130
Query: 140 ----QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRN-TVDMG--RTVVCTI 192
R+R+ +A V +PSI+ DEP +GLD IR RN ++G R V+ +
Sbjct: 131 LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEER---IR-FRNLLSELGEDRIVILST 186
Query: 193 HQPSIDIFYSFDELFLLKQ 211
H D+ +++ +L +
Sbjct: 187 HIVE-DVESLCNQVAVLNK 204
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 7e-11
Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 40/200 (20%)
Query: 45 LNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQET---FA 92
L+ +S + G G+GK+TL+ +L G G + + V G + +
Sbjct: 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKELR 74
Query: 93 RILGYCEQNDIHSPHD-----TLYD---FTHCLYMF--------IEEGMELVELNPFR-Q 135
R +G QN P D T+ + F +EE +ELV L R +
Sbjct: 75 RKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR 130
Query: 136 ALFE----QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCT 191
+ F Q++R+ +A +P I+ DEP +GLD ++ +++ G+T++
Sbjct: 131 SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIV 190
Query: 192 IHQPSIDIFYSFDELFLLKQ 211
H + D + +L+
Sbjct: 191 THDLD-LLLELADRVIVLED 209
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 1e-10
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 37/162 (22%)
Query: 45 LNSLSGAFRPG---------GAGKTTLMDVLAG-RKP-GGYITRNITVSGYP--EKQETF 91
L+ +S G GAGKTTL+ ++ G KP G I V G ++ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 92 ARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFV 151
R +GY + + T+ + GM ++RL +A +
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLSG-----GM---------------KQRLALAQALL 111
Query: 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193
+P ++ DEP SGLD + ++R G+T++ + H
Sbjct: 112 HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSH 153
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 44/171 (25%), Positives = 64/171 (37%), Gaps = 30/171 (17%)
Query: 46 NSLSGAFRPGGAGKTTLMDVLAG--RKPGGYITRNITVSGYP--EKQETFARILGYCEQN 101
+ G P GAGKTT + +L R G V+GY + R +G Q
Sbjct: 19 GEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVREPRKVRRSIGIVPQY 74
Query: 102 DIHSPHDTLYDFTHCLYMF--------------IEEGMELVELNPFRQALFE-----QRK 142
S + L + L M EE +EL EL R+
Sbjct: 75 --ASVDEDLTGREN-LEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRR 131
Query: 143 RLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193
RL +A + P ++ DEP +GLD R + +R + G T++ T H
Sbjct: 132 RLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 6e-10
Identities = 47/209 (22%), Positives = 79/209 (37%), Gaps = 31/209 (14%)
Query: 9 IEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAG 68
IE N K + +L+ I S+ G+ L G P GAGK+TL+ ++
Sbjct: 1 IEFINVTKT-----YPNGTAALDGINISISA---GEFVFLVG---PSGAGKSTLLKLIYK 49
Query: 69 R-KP--GGYITRNITVSGYPEKQETFAR-ILGYCEQNDIHSPHDTLYDFTHCLYMFIEEG 124
P G VS + + R +G Q+ P +Y+
Sbjct: 50 EELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVP 109
Query: 125 -----------MELVELNPFRQALFEQ-----RKRLTVAVEFVANPSIISRDEPISGLDA 168
+ELV L+ +AL + ++R+ +A V +P+I+ DEP LD
Sbjct: 110 PREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDP 169
Query: 169 RAATTVIRMVRNTVDMGRTVVCTIHQPSI 197
++ +++ G TVV H +
Sbjct: 170 DTTWEIMNLLKKINKAGTTVVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 68/302 (22%), Positives = 115/302 (38%), Gaps = 74/302 (24%)
Query: 45 LNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYI--TRNITVSGYP--EKQETF 91
L + G +PG G+G +TL+ +A G +I IT G E ++ +
Sbjct: 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHY 136
Query: 92 ARILGYCEQNDIHSPH----DTL--------------------------------YDFTH 115
+ Y + D+H PH +TL Y +H
Sbjct: 137 RGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH 196
Query: 116 CLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVI 175
+ G + V R +RKR+++A + I D GLD+ A I
Sbjct: 197 TRNTKV--GNDFV-----RGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFI 249
Query: 176 RMVRNTVDMGR-TVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEK 234
R ++ + ++ T + I+Q S D + FD++ +L + G +I GP + YFEK
Sbjct: 250 RALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGP----ADKAKQYFEK 304
Query: 235 IFGVSKIKDGYNLATWLLEVTALSQERAFG----------VDFSDIYRNSELYKRAKAVI 284
+ G K D A +L +T+ ++ + +F +RNS Y + I
Sbjct: 305 M-GF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEI 362
Query: 285 TE 286
E
Sbjct: 363 DE 364
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-09
Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 28/164 (17%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQETFARI-LGYCEQNDIHSPHDTL 110
GAGK+TL+ L G R G + + Y K R +G Q+ P D L
Sbjct: 26 ANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQD----PDDQL 81
Query: 111 YDFT----------------HCLYMFIEEGMELVELNPFRQALFE-----QRKRLTVAVE 149
+ + + E + V + R+ ++KR+ +A
Sbjct: 82 FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGA 141
Query: 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193
P ++ DEP +GLD ++ ++R G TVV + H
Sbjct: 142 VAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-09
Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 23/162 (14%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYIT-RNITVSGYPEKQETFARILGYCEQNDIHSPHDTL 110
P G+GK+TL+ +AG G I ++ ++ R +G Q+ PH T+
Sbjct: 34 PSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTV 93
Query: 111 YDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARA 170
+ G Q++R+ +A +P ++ DEP S LD
Sbjct: 94 LENI----ALGLSG--------------GQQQRVALARALAMDPDVLLLDEPTSALDPIT 135
Query: 171 ATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQ 211
V ++++ G TVV H + D + +L+
Sbjct: 136 RREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRD 176
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 8e-09
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 39/186 (20%)
Query: 54 PGGAGKTTLMDVLAGR-KPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYD 112
P GAGK+TL+ + G KP + +I V G P ++E RI GY Q D
Sbjct: 33 PNGAGKSTLLKAILGLLKP---TSGSIRVFGKPLEKER-KRI-GYVPQR-----RSIDRD 82
Query: 113 F------------THCLYMF----------IEEGMELVELNPFRQALFE-----QRKRLT 145
F +F ++E +E V L+ Q++R+
Sbjct: 83 FPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVL 142
Query: 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDE 205
+A V +P ++ DEP +G+D + + ++R G T++ H + + FD
Sbjct: 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL-VLEYFDR 201
Query: 206 LFLLKQ 211
+ LL +
Sbjct: 202 VLLLNR 207
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 48/228 (21%), Positives = 83/228 (36%), Gaps = 44/228 (19%)
Query: 28 ISLNEIVYSV--DMPQIGDLNS------LSGAFRPGGAGKTTLMDVLAG-RKPGGYITRN 78
I + + + D++ P G+GK+TL+ +L G KP +
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP---TSGE 60
Query: 79 ITVSGYPEKQETFARIL----GYCEQNDIHSPHD-----TLYD---FTHCLYMFIEEGM- 125
+ V G E L G QN P D T+ D F E +
Sbjct: 61 VLVDGLDTSSEKSLLELRQKVGLVFQN----PDDQLFGPTVEDEVAFGLENLGLPREEIE 116
Query: 126 -------ELVELNPFRQAL-FE----QRKRLTVAVEFVANPSIISRDEPISGLDARAATT 173
ELV L F Q++R+ +A P I+ DEP +GLD +
Sbjct: 117 ERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176
Query: 174 VIRMVRNTV-DMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220
++ +++ + G+T++ H + D + +L G+ ++ G
Sbjct: 177 LLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILADGD 222
|
Length = 235 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-08
Identities = 51/214 (23%), Positives = 84/214 (39%), Gaps = 45/214 (21%)
Query: 54 PGGAGKTTLMDVLAG-RKP-GGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHD--- 108
P GAGK+TL+ + G KP G I + G P ++ +GY Q S D
Sbjct: 38 PNGAGKSTLLKAILGLLKPSSGEIK----IFGKPVRKRRKRLRIGYVPQ---KSSVDRSF 90
Query: 109 --TLYDFTHCLYMF------------------IEEGMELVELNPFRQALFE-----QRKR 143
T+ D + + ++E +E V + R Q++R
Sbjct: 91 PITVKDV---VLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQR 147
Query: 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSF 203
+ +A NP ++ DEP +G+D + +++ G+TV+ H + + Y F
Sbjct: 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAY-F 206
Query: 204 DELFLLKQVGQEISVGPLGPSSIHLISYFEKIFG 237
D + L I+ GP P + EK FG
Sbjct: 207 DRVICLN--RHLIASGP--PEEVLTEENLEKAFG 236
|
Length = 254 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 8e-08
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 27/159 (16%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLY 111
GAGKTTL +LAG ++ G +I ++G P K + + +GY Q+ L+
Sbjct: 34 KNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERRKSIGYVMQD----VDYQLF 85
Query: 112 ------------DFTHCLYMFIEEGMELVELNPFR----QALFE-QRKRLTVAVEFVANP 154
E ++ ++L + +L Q++RL +A ++
Sbjct: 86 TDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGK 145
Query: 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193
++ DEP SGLD + V ++R G+ V+ H
Sbjct: 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR-MVRNTVDMGRTVVCTIHQPSI 197
Q++R+ +A + P +I DEP++ LD ++ V+ + R + G TV+ ++HQ +
Sbjct: 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 58/206 (28%), Positives = 87/206 (42%), Gaps = 27/206 (13%)
Query: 36 SVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQETFAR 93
S+D+ G+L +L G P GAGK+TL+ ++AG G I N V R
Sbjct: 22 SLDIKS-GELVALLG---PSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 94 ILGYCEQNDIHSPHDTLYD---FTHCLYMF----------IEEGMELVELNPF-----RQ 135
+G+ Q+ PH T+ D F + +EE + LV+L Q
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQ 137
Query: 136 ALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQ 194
QR+R+ +A P ++ DEP LDA+ + R +R D +G T V H
Sbjct: 138 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHD 197
Query: 195 PSIDIFYSFDELFLLKQVGQEISVGP 220
+ D + +L Q G+ VGP
Sbjct: 198 QE-EALELADRVVVLNQ-GRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 42/173 (24%)
Query: 54 PGGAGKTTLMDVLAGRKP--GGYITRNITVSGYP---EKQETFARILGYCEQNDIHSPHD 108
P G+GK+TL+ LAG G +T+ G P Q+ R + C Q+ H
Sbjct: 369 PSGSGKSTLLATLAGLLDPLQG----EVTLDGVPVSSLDQDEVRRRVSVCAQD----AH- 419
Query: 109 TLYDFT----------HCLYMFIEEGMELVELNPFRQALFE----------------QRK 142
L+D T + +E V L + +AL + +R+
Sbjct: 420 -LFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQ 478
Query: 143 RLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195
RL +A +A+ I+ DEP LDA A ++ + GRTVV H
Sbjct: 479 RLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 3e-07
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 121 IEEGMELVELNPFRQALFE-----QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVI 175
++E + LV+ FR + Q+KR+ +A V + DEP +GLD T +I
Sbjct: 117 VDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176
Query: 176 RMVRNTVDMGRTVVCTIHQPSIDIFYSF-DELFLLKQVGQEISVGPLG 222
++R V G V+ + H ID+ Y D +++L+Q GQ ++ G G
Sbjct: 177 AIIRRIVAQGNHVIISSH--DIDLIYEISDAVYVLRQ-GQILTHGAPG 221
|
Length = 271 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 36/166 (21%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQETFA--RILGYCEQNDIHSPHDT 109
P GAGKTT + +LAG G TV G+ +E R LG S
Sbjct: 39 PNGAGKTTTLRMLAGLLEPDAG----FATVDGFDVVKEPAEARRRLG------FVSDSTG 88
Query: 110 LYD---------FTHCLYMF--------IEEGMELVELNPFRQALFE-----QRKRLTVA 147
LYD + LY +EE + + + R+++ +A
Sbjct: 89 LYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIA 148
Query: 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193
V +P ++ DEP +GLD A + +R +G+ ++ + H
Sbjct: 149 RALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 34/182 (18%)
Query: 43 GDLNSLSGAFRPGGAGKTTLMDVLAG--RKPGGYIT---RNITVSGYPEKQETFARILGY 97
G+ ++ G P GAGK+TL+ + G I +IT + ++ RI G
Sbjct: 28 GEFVAIIG---PSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI-GM 83
Query: 98 CEQN-DIHSPHDTLYDFTH-----------CLYMF----IEEGMELVE-LNPFRQALFE- 139
Q+ ++ L + H L F E + +E + +A
Sbjct: 84 IFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA 143
Query: 140 ------QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRN-TVDMGRTVVCTI 192
Q++R+ +A P +I DEPI+ LD + + V+ ++ + G TV+ +
Sbjct: 144 DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINL 203
Query: 193 HQ 194
HQ
Sbjct: 204 HQ 205
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQETFARI---LGYCEQNDIHSPHD 108
P GAGKTT M ++ G + G IT + Y + E RI + + +
Sbjct: 34 PNGAGKTTTMKIILGLIKPDSGEITFDG--KSYQKNIEALRRIGALIEAPGFYPNLTARE 91
Query: 109 TLYDFTHCLYMF-----IEEGMELVELN-----PFRQALFEQRKRLTVAVEFVANPSIIS 158
L + I+E +++V L + ++RL +A+ + NP ++
Sbjct: 92 NLR--LLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLI 149
Query: 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQ 194
DEP +GLD + ++ + D G TV+ + H
Sbjct: 150 LDEPTNGLDPDGIKELRELILSLRDQGITVLISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 31/164 (18%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQET--FARILGYCEQNDIHSPHDT 109
P GAGKTT + +L + G TV+G+ +E R +G Q+ T
Sbjct: 34 PNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89
Query: 110 LYDFTHCLYMF--------------IEEGMELVELNPFRQALFEQ-----RKRLTVAVEF 150
++ LY+ I+E ++ V L L + R+RL +A
Sbjct: 90 GWE---NLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSL 146
Query: 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIH 193
V P ++ DEP GLD + V + + G T++ T H
Sbjct: 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 27/169 (15%)
Query: 54 PGGAGKTTLMDVLAG-RKP-GGYIT---RNITVSGYPEKQETFARILGYCEQNDIHS--P 106
P G+GK+TL+++L G KP G + +++T E + + +G+ QN + P
Sbjct: 39 PSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQN--FNLLP 96
Query: 107 HDTLYDF--THCLYMFIEEGM---------ELVELNPFRQALF--E----QRKRLTVAVE 149
T+ + L G E++ L E Q++R+ +A
Sbjct: 97 DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARA 156
Query: 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTV-DMGRTVVCTIHQPSI 197
+ NP II DEP LD++ A V+ ++R + G+T++ H P +
Sbjct: 157 LINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPEL 205
|
Length = 226 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 30/170 (17%)
Query: 47 SLSGAFRPGGAGKTTLMDVLAG-----------------RKPGGYITRNITVSGYPEKQE 89
++G GAGKTTL+ ++A R P R I V ++
Sbjct: 29 EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVR-RKIGVL--FGERG 85
Query: 90 TFARILGYCEQNDIHSPHDTLYDFT-HCLYMFIEEGMELVELNPF---RQALFE--QRKR 143
+AR+ +N + L + + I E + ++L + R F +++
Sbjct: 86 LYARLTA--RENLKY--FARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQK 141
Query: 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193
+ +A V +PSI+ DEP SGLD R ++ + GR V+ + H
Sbjct: 142 VAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSH 191
|
Length = 245 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 30/164 (18%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYITRNITVSGY-P-EKQETFAR----ILGYCEQN--DI 103
P GAGKTT + +L+G + G + V+G P ++++ F R + G Q D+
Sbjct: 55 PNGAGKTTTLKILSGLLQPTSG----EVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110
Query: 104 HSPHDTLYDFTHCLYMF--------IEEGMELVELNPF-----RQALFEQRKRLTVAVEF 150
D+ Y +Y ++E EL++L RQ QR R +A
Sbjct: 111 -PVIDSFY-LLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAAL 168
Query: 151 VANPSIISRDEPISGLDARAATTVIRMVRNTV-DMGRTVVCTIH 193
+ P I+ DEP GLD A + ++ + G TV+ T H
Sbjct: 169 LHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 41/166 (24%), Positives = 64/166 (38%), Gaps = 36/166 (21%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQETFARILGY------------CE 99
P G GKTTL+ +LAG R G + N T E+++ R + Y
Sbjct: 34 PNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQRDEPHRNILYLGHLPGLKPELSAL 91
Query: 100 QN-----DIHSPHDTLYDFTHCLYMFIEEGMELVELN-----PFRQALFEQRKRLTVAVE 149
+N IH IE+ + V L P Q Q++RL +A
Sbjct: 92 ENLHFWAAIHGGAQRT----------IEDALAAVGLTGFEDLPAAQLSAGQQRRLALARL 141
Query: 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195
+++ + DEP + LD + ++R + G V+ T HQ
Sbjct: 142 WLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 54/223 (24%), Positives = 88/223 (39%), Gaps = 45/223 (20%)
Query: 47 SLSGAFRPGGAGKTTLMDVLAGRKP---GGYITRNITVSGYPEKQETFARILGYCEQN-- 101
SL+G P G+GK+TL+ +LAG G + + G + AR + EQ+
Sbjct: 28 SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR--ARRVALVEQDSD 85
Query: 102 --------DI----HSPH------DTLYD---FTHCLYMFIEEGMELVELNPFRQALFE- 139
D+ PH D+ +D L EL+
Sbjct: 86 TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALAR--------TELSHLADRDMST 137
Query: 140 ----QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195
+R+R+ VA P ++ DEP + LD RA + +VR G TVV +H
Sbjct: 138 LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDL 197
Query: 196 SIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGV 238
++ Y D + +L G+ ++ GP P + + ++GV
Sbjct: 198 NLAASYC-DHVVVLDG-GRVVAAGP--PREVLTPALIRAVYGV 236
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 8e-06
Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 38/211 (18%)
Query: 36 SVDMPQIGDLNSLSGAFRPGGAGKTTL---MDVLAGRKPGGYITRNITVSGYPEKQETFA 92
S+D+P+ G + S+ G P GAGK+TL M L + G + ++ P K A
Sbjct: 21 SLDIPK-GGITSIIG---PNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSK--ELA 74
Query: 93 RILGYCEQNDIHSPHDTLYDFTHCLYMF-----------------IEEGMELVELNPFR- 134
+ L +Q + + T+ D L F I E +E + L
Sbjct: 75 KKLSILKQENHINSRLTVRD----LVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSD 130
Query: 135 QALFE----QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVV 189
+ L E QR+R +A+ + + DEP++ LD + + +++++R D +G+T+V
Sbjct: 131 RYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIV 190
Query: 190 CTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220
+H + YS D + LK G+ + G
Sbjct: 191 VVLHDINFASCYS-DHIVALKN-GKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 31/176 (17%)
Query: 43 GDLNSLSGAFRPGGAGKTTLMDVLAG--RKPGGYITRN-ITVSGYPEKQETFARILGYCE 99
G+ +L G P G GKTTL+ ++AG R G I + V+G P ++ R +G
Sbjct: 26 GEFLALLG---PSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER----RNIGMVF 78
Query: 100 QNDIHSPHDTLYD---FTHCLYMF----------IEEGMELVELNPFRQALFE-----QR 141
Q+ PH T+ + F L + + E +ELV L Q+
Sbjct: 79 QDYALFPHLTVAENIAFG--LKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQ 136
Query: 142 KRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNT-VDMGRTVVCTIHQPS 196
+R+ +A PS++ DEP+S LDA+ + ++ ++G T + H
Sbjct: 137 QRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 45/207 (21%)
Query: 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAG-RKPGGYITR 77
I + +S +I L+++S R G G+GK+TL+ +LAG KP
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTS---G 59
Query: 78 NITVSGYPEKQ---ETFARILGYCEQNDIHSPHDTLYDFTHCLYMF--------IEEGME 126
++ + G +Q R +GY Q D+ + TL D + + I E
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLFYGTLRD---NITLGAPLADDERILRAAE 115
Query: 127 LVELNPFRQAL---FE-------------QRKRLTVAVEFVANPSIISRDEPISGLDARA 170
L + F + QR+ + +A + +P I+ DEP S +D +
Sbjct: 116 LAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNS 175
Query: 171 ATTVIRMVRNTVDMGRTVVCTIHQPSI 197
+ +R + +T++ H+PS+
Sbjct: 176 EERLKERLRQLLG-DKTLIIITHRPSL 201
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 54/250 (21%), Positives = 88/250 (35%), Gaps = 56/250 (22%)
Query: 12 NNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTL 62
+K + L I + + L LS PG G+GK+TL
Sbjct: 456 QEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTL 515
Query: 63 MDVLAGR-KPGGYITRNITVSGYPEKQ---ETFARILGYCEQND------------IHSP 106
+ +L G KP I + G + R +GY Q+ + +P
Sbjct: 516 LKLLLGLYKP---QQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP 572
Query: 107 HDTLYDFTHCLYM-----FIEE---GMELVELNPFRQALFE--------QRKRLTVAVEF 150
T + + FIE G + + E QR+RL +A
Sbjct: 573 EATDEEIIEAAQLAGAHEFIENLPMGYDTP--------VGEGGANLSGGQRQRLALARAL 624
Query: 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210
++ P I+ DE S LD +++ + + GRTV+ H+ S S D + +L
Sbjct: 625 LSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVIIIAHRLS--TIRSADRIIVLD 681
Query: 211 QVGQEISVGP 220
Q G+ + G
Sbjct: 682 Q-GKIVEQGS 690
|
Length = 709 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 3e-05
Identities = 36/153 (23%), Positives = 56/153 (36%), Gaps = 39/153 (25%)
Query: 54 PGGAGKTTLMDVLAG-RKPGGYITRNITVSGYPEKQ---ETFARILGYCEQNDIHSPHDT 109
P G+GK+TL ++ G +P + + G Q +GY Q+D
Sbjct: 36 PSGSGKSTLARLILGLLRPTS---GRVRLDGADISQWDPNELGDHVGYLPQDDE------ 86
Query: 110 LYDFTHCLYMFIEEGMELVELNPFRQALFE--QRKRLTVAVEFVANPSIISRDEPISGLD 167
L+ + + + QR+RL +A NP I+ DEP S LD
Sbjct: 87 LFSGS------------------IAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLD 128
Query: 168 A---RAATTVIRMVRNTVDMGRTVVCTIHQPSI 197
RA I ++ G T + H+P
Sbjct: 129 VEGERALNQAIAALKAA---GATRIVIAHRPET 158
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 124 GMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD 183
GME E P Q+KR+ +A P II DEP SGLD A+ +++++ +
Sbjct: 126 GMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK 185
Query: 184 MGRTVVCTIHQPSIDIFYSFDELFLL 209
G T++ + H + Y+ D+++++
Sbjct: 186 EGITIIISTHDVDLVPVYA-DKVYVM 210
|
Length = 275 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 4e-05
Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 24/164 (14%)
Query: 50 GAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPE-KQETFARI-LGYCEQNDIHSPH 107
G P GAGK+T+ +L G ITV G P + AR+ +G Q D P
Sbjct: 34 GLLGPNGAGKSTIARMLLGMISPDRGK--ITVLGEPVPSRARLARVAIGVVPQFDNLDPE 91
Query: 108 DTLYDFTHCLYMFIEEGMELVELNPFRQALFE------------------QRKRLTVAVE 149
T+ + + L GM E+ +L E ++RLT+A
Sbjct: 92 FTVRE--NLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARA 149
Query: 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193
+ +P ++ DEP +GLD A + +R+ + G+T++ T H
Sbjct: 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-05
Identities = 41/155 (26%), Positives = 61/155 (39%), Gaps = 16/155 (10%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQETFARILGYC-EQNDIH---SPH 107
P G+GKTTL+ +LAG G + N ++++ AR L Y I S
Sbjct: 34 PNGSGKTTLLRILAGLSPPLAGRVLLNGG--PLDFQRDSIARGLLYLGHAPGIKTTLSVL 91
Query: 108 DTLYDFTH--CLYMFIEEGMELVELNPFRQALFE-----QRKRLTVAVEFVANPSIISRD 160
+ L F H +EE + V LN F Q++R+ +A ++ + D
Sbjct: 92 ENLR-FWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILD 150
Query: 161 EPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195
EP + LD + G VV T HQ
Sbjct: 151 EPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 49/178 (27%), Positives = 74/178 (41%), Gaps = 36/178 (20%)
Query: 54 PGGAGKTTLMDVLAG-RKP-GGYITRN---ITVSGYPEKQETFARILGYCEQNDIHSPHD 108
P G+GK+ L++ +AG KP G I N IT + PEK R + Y QN PH
Sbjct: 33 PTGSGKSVLLETIAGFIKPDSGKILLNGKDIT-NLPPEK-----RDISYVPQNYALFPHM 86
Query: 109 TLYD-----FTHCLYMFIE---EGMELVEL---------NPFRQALFEQRKRLTVAVEFV 151
T+Y E + +E+ E+ P + EQ +R+ +A V
Sbjct: 87 TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQ-QRVAIARALV 145
Query: 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209
NP I+ DEP S LD R + ++ V +H + + F+E + L
Sbjct: 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV--LH-----VTHDFEEAWAL 196
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 5e-05
Identities = 42/187 (22%), Positives = 66/187 (35%), Gaps = 61/187 (32%)
Query: 45 LNSLSGAFRPG---------GAGKTTLMDVLAG-RKP-GGYITRNITVSGYPEKQETFAR 93
L+ +S + R G GAGK+TLM +L+G KP G I V G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSG----EILVDGKEV------- 64
Query: 94 ILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVAN 153
SP D G+ +V Q +R+ + +A N
Sbjct: 65 --------SFASPRDA-----------RRAGIAMVY-----QLSVGERQMVEIARALARN 100
Query: 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYS--FDELFLLKQ 211
++ DEP + L + +++R G V IF S DE+F +
Sbjct: 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAV----------IFISHRLDEVF---E 147
Query: 212 VGQEISV 218
+ ++V
Sbjct: 148 IADRVTV 154
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 6e-05
Identities = 42/186 (22%), Positives = 74/186 (39%), Gaps = 43/186 (23%)
Query: 43 GDLNSLSGAFRPGGAGKTTLMDVLAG-RKP--GGYITRNITVSGYPEKQETF--ARILGY 97
G+ ++ G P G+GK+TL+++L G +P G +S EK+ R +G+
Sbjct: 30 GEFVAIVG---PSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGF 86
Query: 98 CEQNDIHS--PHDTLYDFTHCLYMFIEEGMELVELNPFR-----QALFE----------- 139
Q+ + P T + +E + L + + L E
Sbjct: 87 VFQS--FNLLPDLTALEN-------VELPLLLAGVPKKERRERAEELLERVGLGDRLNHY 137
Query: 140 -------QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV-DMGRTVVCT 191
Q++R+ +A +P II DEP LD+ V+ ++R + G T+V
Sbjct: 138 PSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVV 197
Query: 192 IHQPSI 197
H P +
Sbjct: 198 THDPEL 203
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 57/219 (26%), Positives = 90/219 (41%), Gaps = 50/219 (22%)
Query: 2 LPMTEAAIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTT 61
PM+ A I+ N KR + + ++ + + V Q G+ L G P GAGKTT
Sbjct: 1 GPMSVAPIDFRNVEKR-----YGDKLV-VDGLSFHV---QRGECFGLLG---PNGAGKTT 48
Query: 62 LMDVLAGRKPGGYITR----NITVSGYPEKQET-FARI-LGYCEQNDIHSPHDTLYDFT- 114
+ +L G +T +I++ G P AR +G Q D P DFT
Sbjct: 49 TLRMLLG------LTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDP-----DFTV 97
Query: 115 -HCLYMFIEE-GMELVELNPFRQALFE------------------QRKRLTVAVEFVANP 154
L +F G+ L E ++RLT+A V +P
Sbjct: 98 RENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDP 157
Query: 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193
++ DEP +GLD +A + +R+ + G+T++ T H
Sbjct: 158 DVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 40/182 (21%), Positives = 67/182 (36%), Gaps = 26/182 (14%)
Query: 47 SLSGAFRPGGAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQ---ETFARILGYCEQN 101
++G F GAGK+TL+ +AG + GG I N TV K+ R +G Q
Sbjct: 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ 83
Query: 102 DIHSPHDTLYDFTHCLYMFIEEGM------ELVELNPFRQALFE--------QRKRLTVA 147
PH + + EL++L L +++R+ +A
Sbjct: 84 YALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALA 143
Query: 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELF 207
A P ++ DEP S LD ++ ++ ++ P I + + E
Sbjct: 144 RALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK-------NLNIPVIFVTHDLSEAE 196
Query: 208 LL 209
L
Sbjct: 197 YL 198
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 7e-05
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 42/151 (27%)
Query: 56 GAGKTTLMDVLAG-RKP-GGYITRNITVSGYPEKQ---ETFARILGYCEQNDIHSPHDTL 110
G+GK+TL+ +L P G I + G + E+ + + Y Q+ P L
Sbjct: 38 GSGKSTLLKLLLRLYDPTSG----EILIDGVDLRDLDLESLRKNIAYVPQD----PF--L 87
Query: 111 YDFTHCLYMFIEE-----GMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISG 165
+ T I E G QR+R+ +A + +P I+ DE S
Sbjct: 88 FSGT------IRENILSGG---------------QRQRIAIARALLRDPPILILDEATSA 126
Query: 166 LDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196
LD ++ +R + G+TV+ H+ S
Sbjct: 127 LDPETEALILEALRA-LAKGKTVIVIAHRLS 156
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 44/213 (20%), Positives = 79/213 (37%), Gaps = 68/213 (31%)
Query: 32 EIVYSVDMPQIGDLN---------SLSGAFRPGGAGKTTLMDVLAGRKP--GGYITRN-I 79
+ Y P + ++ +L G P GAGK+TL+++L G G I N +
Sbjct: 328 SVAYPGRRPALRPVSFTVPPGERVALVG---PSGAGKSTLLNLLLGFVDPTEGSIAVNGV 384
Query: 80 TVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMF------------------- 120
++ ++ + + Q+ P ++F
Sbjct: 385 PLADADAD--SWRDQIAWVPQH----P-----------FLFAGTIAENIRLARPDASDAE 427
Query: 121 IEEGMELVELNPFRQALFE----------------QRKRLTVAVEFVANPSIISRDEPIS 164
I E +E L+ F AL + Q +RL +A F+ + ++ DEP +
Sbjct: 428 IREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTA 487
Query: 165 GLDARAATTVIRMVRNTVDMGRTVVCTIHQPSI 197
LDA V+ +R GRTV+ H+ ++
Sbjct: 488 HLDAETEAEVLEALRALAQ-GRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 21/163 (12%)
Query: 46 NSLSGAFRPGGAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQETFARILGYCEQNDI 103
NS+ G P GAGK+TL+ ++ G R G I G+P ++ +I E +
Sbjct: 26 NSVYGLLGPNGAGKSTLLKMITGILRPTSG----EIIFDGHPWTRKDLHKIGSLIESPPL 81
Query: 104 H---SPHDTLYDFTHCLYMF-----IEEGMELVELN-----PFRQALFEQRKRLTVAVEF 150
+ + + L H + I+E + +V+L +Q ++RL +A+
Sbjct: 82 YENLTARENLK--VHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIAL 139
Query: 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193
+ +P ++ DEP +GLD + ++R+ + G TV+ + H
Sbjct: 140 LNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 36/172 (20%), Positives = 57/172 (33%), Gaps = 33/172 (19%)
Query: 50 GAFRPGGAGKTTLMDVLAGR-KP-GGYIT-RNITVSGYPEKQETFARILGYCEQN----- 101
G P GAGKTTL +++ G KP G + R ++G P + Q
Sbjct: 34 GLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPP-HRIARLGIARTFQITRLFP 92
Query: 102 ----------DIHSPHDTLYDFTHCLYMFIEEGM--------ELVELNPFRQAL-----F 138
H+ E E V L +
Sbjct: 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSY 152
Query: 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVV 189
Q++RL +A P ++ DEP +GL+ + ++R D G T++
Sbjct: 153 GQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 28/166 (16%)
Query: 50 GAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPE-KQETFARI-LGYCEQNDIHSPH 107
G P GAGK+T+ ++ G ITV G P + AR +G Q D
Sbjct: 71 GLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGVVPQFDNLDLE 128
Query: 108 DTLYD--FTHCLYMFIEEGMELVELNPFRQALFE------------------QRKRLTVA 147
T+ + Y GM E+ +L E ++RLT+A
Sbjct: 129 FTVRENLLVFGRYF----GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLA 184
Query: 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193
+ +P ++ DEP +GLD A + +R+ + G+T++ T H
Sbjct: 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 61/240 (25%), Positives = 87/240 (36%), Gaps = 42/240 (17%)
Query: 47 SLSGAFRPGGAGKTTLMDVLAGR-KPGGYITRNITVSGYPEKQETFARILGYCEQNDIHS 105
SL G P GAGKTTL+ + G P + V+G + AR +
Sbjct: 30 SLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDD-VEALSARAAS---RRVASV 82
Query: 106 PHDTL--YDFT-----------HCLYMF----------IEEGMELVELNPFRQALFE--- 139
P DT ++F H F +E ME + F
Sbjct: 83 PQDTSLSFEFDVRQVVEMGRTPH-RSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLS 141
Query: 140 --QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSI 197
+R+R+ +A ++ DEP + LD + +VR VD G+T V IH +
Sbjct: 142 GGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDL 201
Query: 198 DIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTAL 257
Y DEL LL G+ + GP P+ + F G + AT VT L
Sbjct: 202 AARYC-DELVLLAD-GRVRAAGP--PADVLTADTLRAAFDARTAV-GTDPATGAPTVTPL 256
|
Length = 402 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 60/243 (24%), Positives = 101/243 (41%), Gaps = 41/243 (16%)
Query: 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP---GGYIT 76
+L + + V P L+ LS F G G+GK+TL+ +L +P G +
Sbjct: 13 ALRNVSFRV--PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 77 RNITVSGYPEKQETFARILGYCEQNDIHSPHDTL--------YDFTHCLYMF-------I 121
+ + K FAR + Y Q + T+ Y + L F +
Sbjct: 71 DAQPLESWSSK--AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKV 128
Query: 122 EEGMELVELNPFRQALFE-----QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR 176
EE + LV L P L + +R+R +A+ + + DEP S LD V+
Sbjct: 129 EEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLA 188
Query: 177 MV-RNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKI 235
+V R + + G TV+ +H ++ Y D L L+ G+ I+ G P+ + E+I
Sbjct: 189 LVHRLSQERGLTVIAVLHDINMAARYC-DYLVALRG-GEMIAQGT--PAELMRGETLEQI 244
Query: 236 FGV 238
+G+
Sbjct: 245 YGI 247
|
Length = 265 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 37/180 (20%)
Query: 45 LNSLSGAFRPG---------GAGKTTLMDVLAGRKP--GGYITRN-ITVSGYPEKQETFA 92
++ +S R G G+GK+TL +LAG P G I + + +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 93 RILGYCEQNDIHS--PHDTLYDF------THCLYMF------IEEGMELVELNPFRQALF 138
R + Q+ S P T+ D H + E +ELV L P + L
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPP--EFLD 424
Query: 139 E--------QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVV 189
QR+R+ +A P ++ DEP+S LD V+ ++++ + +G T +
Sbjct: 425 RYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYL 484
|
Length = 539 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 42/166 (25%), Positives = 64/166 (38%), Gaps = 37/166 (22%)
Query: 54 PGGAGKTTLMDVLAG------------RKPGGYITRNITVSGY-PE-----KQETFARIL 95
P GAGKTT + ++ G KP RN GY PE + L
Sbjct: 34 PNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRI--GYLPEERGLYPKMKVIDQL 91
Query: 96 GYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFE-------QRKRLTVAV 148
Y Q + I+E +E +EL+ + E Q+ + AV
Sbjct: 92 VYLAQLKGLKKEEARRR--------IDEWLERLELSEYANKRVEELSKGNQQKVQFIAAV 143
Query: 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQ 194
+ +P ++ DEP SGLD + ++R G+TV+ + HQ
Sbjct: 144 --IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 21/167 (12%)
Query: 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHS 105
N ++ GAGKTT + +L G P T + + + LG C Q++I
Sbjct: 956 NQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILF 1015
Query: 106 PHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQ------------------RKRLTVA 147
H T+ + H L+ +G E +A+ E +++L+VA
Sbjct: 1016 HHLTVAE--HILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVA 1073
Query: 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQ 194
+ FV + ++ DEP SG+D + ++ ++ GRT++ + H
Sbjct: 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK-YRSGRTIIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 38/181 (20%)
Query: 28 ISLNEIVYSVD--MPQIGDLN------SLSGAFRPGGAGKTTLMDVLAGRKP--GGYITR 77
ISL + + P + DLN L+ GAGK+TL+++L G G I
Sbjct: 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRV 380
Query: 78 NITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMF--------IEEGMELVE 129
N + E + + + + QN + T+ + + I ++
Sbjct: 381 N-GIDLRDLSPEAWRKQISWVSQNP-YLFAGTIR---ENILLARPDASDEEIIAALDQAG 435
Query: 130 LNPFRQA-------LFE--------QRKRLTVAVEFVANPSIISRDEPISGLDARAATTV 174
L F + E Q +RL +A ++ S++ DEP + LDA +
Sbjct: 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495
Query: 175 I 175
+
Sbjct: 496 L 496
|
Length = 559 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 40/184 (21%), Positives = 63/184 (34%), Gaps = 44/184 (23%)
Query: 45 LNSLSGAFRPG---------GAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQETFAR 93
+ LS G GAGKTTL+ +LAG R G + +E++ +
Sbjct: 18 FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVRESYHQ 75
Query: 94 ILGYC-------------E----QNDIHSPHDTLYDFTHCLYMFIEEGMELVELN----- 131
L Y E H + I E + V L
Sbjct: 76 ALLYLGHQPGIKTELTALENLHFWQRFHGSGNAAT---------IWEALAQVGLAGLEDL 126
Query: 132 PFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCT 191
P Q Q++R+ +A +++ + DEP + LD + ++ G V+ T
Sbjct: 127 PVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLT 186
Query: 192 IHQP 195
HQP
Sbjct: 187 THQP 190
|
Length = 209 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 29/235 (12%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGR-TVVCTIHQPSID 198
Q+KR+T V + DE +GLD+ +++ ++ V + TV+ ++ QP+ +
Sbjct: 341 QKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPE 400
Query: 199 IFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALS 258
F FD++ LL + GQ + GP H++ +FE G K + A +L EVT+
Sbjct: 401 TFDLFDDIILLSE-GQIVYQGPRD----HILEFFES-CGF-KCPERKGTADFLQEVTSKK 453
Query: 259 QERAFGVDFSDIYRN---SELYKRAKA------VITELSKPAPVSKSLRFSTQYSQSICT 309
+ + D + YR SE +R K+ + ELS P S+S + + +S+
Sbjct: 454 DQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVP 513
Query: 310 KLFAWSWKLAQQRWTKQQHLFNVMVSMYTAVLFLLVQNAGSLQLVAAVEWTIFYR 364
K+ +L + W K+ L +Y +F VQ + +VAA+ T+F R
Sbjct: 514 KM-----ELLKACWDKEWLLMKRNAFVY---VFKTVQ----IIIVAAIASTVFLR 556
|
Length = 1470 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 50/231 (21%), Positives = 86/231 (37%), Gaps = 46/231 (19%)
Query: 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAG-RKPGGYITR 77
I + YS+ ++ L+ +S RPG GAGK+TL+ L+G P
Sbjct: 2 IRAENLSYSLAGRRL--LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS---G 56
Query: 78 NITVSGYPEKQ---ETFARILGYCEQNDIHS--------------PHDTLYDFTHCLYMF 120
+T++G P E AR QN + PH + +
Sbjct: 57 EVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGRE-PEEDERI 115
Query: 121 IEEGMELVELNPFRQALFEQ-----RKRLTVA------VEFVANPSIISRDEPISGLDAR 169
+ + +L+ + ++R+ +A V + + DEP S LD
Sbjct: 116 AAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIA 175
Query: 170 AATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220
+R+ R G V+ +H ++ Y+ D + LL Q G+ I+ G
Sbjct: 176 HQHHTLRLARQLAREGGAVLAVLHDLNLAAQYA-DRIVLLHQ-GRVIASGS 224
|
Length = 259 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 138 FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV-DMGRTVVCTIHQPS 196
F Q+KR+ +A V P ++ DEP +GLD + +++++ ++G T++ H
Sbjct: 144 FGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID 203
Query: 197 IDIFYSFDELFLLKQ 211
I Y D +F++K+
Sbjct: 204 IVPLYC-DNVFVMKE 217
|
Length = 283 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 5e-04
Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 21/164 (12%)
Query: 50 GAFRPGGAGKTTLMDVLAG---RKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSP 106
G P GAGKTT ++ G R G I + +S P R +GY Q
Sbjct: 33 GLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLP-LHARARRGIGYLPQEASIFR 91
Query: 107 HDTLYDFTHCLYMF------------IEEGMELVELNPFRQALFE-----QRKRLTVAVE 149
++YD + E ME + R ++ + +R+R+ +A
Sbjct: 92 RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARA 151
Query: 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193
ANP I DEP +G+D + + R++ + D G V+ T H
Sbjct: 152 LAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDH 195
|
Length = 241 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 5e-04
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 121 IEEGMELVELNPFRQAL-----FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVI 175
EE +E V L + Q++RL +A +P ++ DEP +GL+ +
Sbjct: 124 AEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA 183
Query: 176 RMVRNTVDMGRTVV 189
++R + G TV+
Sbjct: 184 ELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 45/195 (23%), Positives = 75/195 (38%), Gaps = 53/195 (27%)
Query: 30 LNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKP--GGYITRNITVSGYPEK 87
L+E+ + +I G P GAGK+T M ++ G P G ++ V G
Sbjct: 18 LDEVSFEAQKGRI------VGFLGPNGAGKSTTMKIITGYLPPDSG----SVQVCGEDVL 67
Query: 88 QETFA--RILGYCEQNDIHSPHDTLYDFTHCLYMFIEE---------GMELVELNPFRQA 136
Q R +GY + H+ LY L M++ E GM+ L +
Sbjct: 68 QNPKEVQRNIGYLPE------HNPLY-----LDMYVREYLQFIAGIYGMKGQLLKQRVEE 116
Query: 137 LFEQ------------------RKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMV 178
+ E R+R+ +A + +P ++ DEP +GLD IR V
Sbjct: 117 MIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVE-IRNV 175
Query: 179 RNTVDMGRTVVCTIH 193
+ +T++ + H
Sbjct: 176 IKNIGKDKTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 39/178 (21%), Positives = 59/178 (33%), Gaps = 43/178 (24%)
Query: 54 PGGAGKTTLMDVLAGRKPGGYITR-NITVSG---------------------YPE----- 86
P G+GK+TL + G P +T I G YP
Sbjct: 38 PNGSGKSTLAYTIMGH-PKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96
Query: 87 KQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNP--FRQALFE----- 139
F R N L +F ++E EL+ L+ + + E
Sbjct: 97 TNSDFLRA----AMNARRGARGILPEF----IKELKEKAELLGLDEEFLERYVNEGFSGG 148
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSI 197
++KR + + P + DEP SGLD A V + + GR V+ H +
Sbjct: 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 41/166 (24%), Positives = 59/166 (35%), Gaps = 38/166 (22%)
Query: 54 PGGAGKTTLMDVLAGRKP--GGYIT---RNITVSGYPE-----------KQE-------T 90
P G+GKTTL+ ++AG P G I +I E K
Sbjct: 36 PNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLE 95
Query: 91 F-ARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVE 149
F A LG + L G+ + PF Q++R+ +A
Sbjct: 96 FWAAFLG----GEELDIAAALEAV----------GLAPLAHLPFGYLSAGQKRRVALARL 141
Query: 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195
V+N I DEP + LDA A ++R + G V+ H P
Sbjct: 142 LVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP 187
|
Length = 207 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 6e-04
Identities = 44/178 (24%), Positives = 66/178 (37%), Gaps = 39/178 (21%)
Query: 43 GDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQND 102
G+L L G P GAGKTTL+ + G P + V+G + R +GY Q
Sbjct: 6 GELLGLLG---PNGAGKTTLLRAILGLIPPA--KGTVKVAGASPGKGW--RHIGYVPQR- 57
Query: 103 IHSPHDTLYDFTHCLYMFIEEG-------------------------MELVEL--NPFRQ 135
H+ +DF + + G + L EL P +
Sbjct: 58 ----HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE 113
Query: 136 ALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193
QR+R+ VA PS++ DEP +GLD + + G ++ T H
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 7e-04
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 42/201 (20%)
Query: 31 NEIVYSVDMP-QIGDLNSLSGAFRPGGAGKTTLMDVLAG-----RKPG------------ 72
++ +++VD+ G++ +L G P G+GK+TL+ L+G + G
Sbjct: 17 HQALHAVDLNIHHGEMVALLG---PSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQR 73
Query: 73 -GYITRNITVS----GYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME- 126
G + R+I S GY +Q L E I + T + T C F E +
Sbjct: 74 EGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRT-CFSWFTREQKQR 132
Query: 127 -LVELNPFRQALFE----------QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVI 175
L L F Q++R+ +A + +I DEPI+ LD +A V+
Sbjct: 133 ALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM 192
Query: 176 RMVR--NTVDMGRTVVCTIHQ 194
+R N D G TVV T+HQ
Sbjct: 193 DTLRDINQND-GITVVVTLHQ 212
|
Length = 262 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 40/178 (22%)
Query: 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGG----YITRNITVS 82
+ +LN++ +SVD G+L L G P GAGKTTLMDV+ G+ + ++
Sbjct: 18 FKALNDLSFSVD---PGELRVLIG---PNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLT 71
Query: 83 GYPEKQETFARILGYCEQNDI------HSPHDTL---------------YDFTHCLYMFI 121
PE + AR G + + + L I
Sbjct: 72 KLPEHR--IAR-AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRI 128
Query: 122 EEGMELVELNPFRQALFE-----QRKRLTVAVEFVANPSIISRDEPISGL-DARAATT 173
+E + + L R L Q++ L + + +P ++ DEP++G+ DA T
Sbjct: 129 DELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKT 186
|
Length = 249 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 9e-04
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVR--NTVDMGRTVVCTIHQ 194
Q++R+ +A V P II DEP++ LD +A V+ +++ N D G TV+ +HQ
Sbjct: 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQED-GITVIVNLHQ 207
|
Length = 258 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196
QR+R+ +A V NP I+ DE S LD + ++R +R + GRTV+ H+ S
Sbjct: 598 QRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMR-EICRGRTVIIIAHRLS 653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 0.001
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 123 EGMELVELNP--FRQALFE----QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR 176
E +E+V L + ++ FE Q +R+ +A P ++ DEP +GLD +A +++
Sbjct: 126 EKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ 185
Query: 177 MVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSI 226
+ + G+TVV H D+ D ++LL++ G IS G PS +
Sbjct: 186 LFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-GHIISCGT--PSDV 231
|
Length = 288 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 50/202 (24%), Positives = 77/202 (38%), Gaps = 36/202 (17%)
Query: 46 NSLSGAFRPGGAGKTTLMDVLAGR-KP-GGYITRNITVSGY-P-EKQETFARILGYCEQN 101
+ G GAGK+T + +L G P G + V+G P ++E + R +G
Sbjct: 50 GEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR----VNGKDPFRRREEYLRSIGLVMGQ 105
Query: 102 DI-----HSPHDTL------YD--FTHCLYMFIEEGMELVEL--------NPFRQALFEQ 140
+ D+L Y+ F E L E+ P R+ Q
Sbjct: 106 KLQLWWDLPALDSLEVLKLIYEIPDDE----FAERLDFLTEILDLEGFLKWPVRKLSLGQ 161
Query: 141 RKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRN-TVDMGRTVVCTIHQPSIDI 199
R R +A + P ++ DEP GLD A + ++ + TV+ T H DI
Sbjct: 162 RMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DI 220
Query: 200 FYSFDELFLLKQVGQEISVGPL 221
D + L+ Q GQ + G L
Sbjct: 221 ATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 47/189 (24%), Positives = 74/189 (39%), Gaps = 35/189 (18%)
Query: 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPE 86
+++ I + V +I G P GAGKTT ++ G IT +G P
Sbjct: 15 KKAVDNISFEVPPGEI------FGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPL 66
Query: 87 KQETFARILGYC-EQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFE------ 139
QE RI GY E+ ++ P T+ D Y+ +GM E+ QA E
Sbjct: 67 SQEIKNRI-GYLPEERGLY-PKMTVED--QLKYLAELKGMPKAEIQKKLQAWLERLEIVG 122
Query: 140 --------------QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMG 185
Q+ + AV + P ++ DEP SGLD + + + G
Sbjct: 123 KKTKKIKELSKGNQQKIQFISAV--IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180
Query: 186 RTVVCTIHQ 194
T++ + H+
Sbjct: 181 ATIIFSSHR 189
|
Length = 300 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 43/178 (24%), Positives = 69/178 (38%), Gaps = 38/178 (21%)
Query: 43 GDLNSLSGAFRPGGAGKTTLMDVLAG-RKPGGYITRNITVSGY------PEKQETFARIL 95
G+L +L G G GKTTL+ +AG K G +T I ++ P K R L
Sbjct: 31 GELLALIG---KSGCGKTTLLRAIAGFVKAAG-LTGRIAIADRDLTHAPPHK-----RGL 81
Query: 96 GYCEQNDIHSPHDTLYD-----------FTHCLYMFIEEGMELVELNPFRQALFEQ---- 140
QN PH + D + + + ++LV L L Q
Sbjct: 82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGG 141
Query: 141 -RKRLTVAVEFVANPSIISRDEPISGLDARAATTVI----RMVRNTVDMGRTVVCTIH 193
++R+ +A P ++ DEP+S LDA + + ++ T++C H
Sbjct: 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL--TILCVTH 197
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 30/150 (20%)
Query: 54 PGGAGKTTLMDVLAG-RKP-GGYIT---RNIT-VSGYPEKQETFARILGYCEQNDIHSPH 107
P G GKTTL+ ++AG +P G I +IT V PEK R +G Q+ PH
Sbjct: 39 PSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP--PEK-----RPIGMVFQSYALFPH 91
Query: 108 DTLYDFTHC-LYM-----------FIEEGMELVELNPFRQALFE-----QRKRLTVAVEF 150
T+ + L + +EE +ELV L F Q++R+ +A
Sbjct: 92 MTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARAL 151
Query: 151 VANPSIISRDEPISGLDARAATTVIRMVRN 180
V P ++ DEP+S LDA+ + + ++
Sbjct: 152 VPEPKVLLLDEPLSALDAKLREQMRKELKE 181
|
Length = 352 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 45 LNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSG 83
L LS PG GAGK+TL+ LAG GG R V+G
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTG 64
|
Length = 272 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 45/175 (25%)
Query: 43 GDLNSLSGAFRPGGAGKTTLMDVLAG-RKP-GGYIT---RNITVSGYPEKQETFARILGY 97
G+ L G P G GK+TL+ ++AG +P G I R++T PEK R +
Sbjct: 29 GEFVVLLG---PSGCGKSTLLRMIAGLEEPTSGEILIDGRDVT-DLPPEK-----RGIAM 79
Query: 98 CEQNDIHSPHDTLYD---FTHCLYMF----------IEEGMELVELNPF-----RQALFE 139
QN PH T+Y+ F L + ++E +L+ L Q
Sbjct: 80 VFQNYALYPHMTVYENIAFG--LKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGG 137
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQ 194
QR+R+ +A V P + DEP+S LDA+ +R V M R+ + +H+
Sbjct: 138 QRQRVALARALVRKPKVFLLDEPLSNLDAK-----LR-----VLM-RSEIKKLHE 181
|
Length = 338 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.003
Identities = 43/159 (27%), Positives = 63/159 (39%), Gaps = 27/159 (16%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPH---- 107
GAGKTTL+ VLAG G I + G + +R + Y H P
Sbjct: 45 DNGAGKTTLLRVLAGLLHVESGQ----IQIDGKTATRGDRSRFMAYLG----HLPGLKAD 96
Query: 108 -DTLYD--FTHCLYMFIEEGM-----ELVELNPFRQALFE-----QRKRLTVAVEFVANP 154
TL + F L+ + M +V L + L Q+KRL +A +++
Sbjct: 97 LSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPA 156
Query: 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193
+ DEP + LD T V RM+ + G + T H
Sbjct: 157 PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 42/171 (24%), Positives = 65/171 (38%), Gaps = 37/171 (21%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYI---TRNITVSGYPEKQETFARILGYCEQNDIHSPHD 108
G+GK+TL+ ++ G R G I +I E E R+ G Q
Sbjct: 42 GSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM-GVLFQ------QG 94
Query: 109 TLYD----FTHCLYMFIE--------------EGMELVELNPFRQALFEQ------RKRL 144
L+ F + + E +ELV L L+ RKR+
Sbjct: 95 ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRV 154
Query: 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQ 194
+A +P ++ DEP SGLD +A + ++R D +G TV+ H
Sbjct: 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 21/141 (14%)
Query: 47 SLSGAFRPGGAGKTTLMDVLAG-RKPGGYITRNITVSGYPEKQETFA-RILGYCEQNDIH 104
SL P G+GK+TL+ ++AG +P + I ++G + R +G+ Q+
Sbjct: 27 SLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYAL 83
Query: 105 SPHDTLYD---F--------THCLYMFIEEGMELVELNPF-----RQALFEQRKRLTVAV 148
H T+ D F + +EE +ELV+L Q QR+R+ +A
Sbjct: 84 FKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALAR 143
Query: 149 EFVANPSIISRDEPISGLDAR 169
P ++ DEP LDA+
Sbjct: 144 ALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196
QR+R+ +A + NP I+ DE S LD + ++R + + GRTV+ H+ S
Sbjct: 143 QRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.004
Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 46/171 (26%)
Query: 56 GAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQETFARILGYCEQND----------- 102
G+GK+TL L G R G I++ G P +Q ++ Y Q++
Sbjct: 43 GSGKSTLFKALMGFVRLASG----KISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVE 98
Query: 103 ---------------IHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFE-----QRK 142
D + + V++ FR Q+K
Sbjct: 99 DVVMMGRYGHMGWLRRAKKRD---------RQIVTAALARVDMVEFRHRQIGELSGGQKK 149
Query: 143 RLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193
R+ +A +I DEP +G+D + +I ++R D G+T++ + H
Sbjct: 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.004
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 38/193 (19%)
Query: 54 PGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGYCEQNDIHSPHDTL 110
P GAGK+TL+ +AG G + +I +G P + AR Y Q +P +
Sbjct: 33 PNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELARHRAYLSQQ--QTPPFAM 87
Query: 111 YDFTHCLYMFIEEGMELVELNPFRQALF----------------EQRKRLT---VAVEFV 151
+ H L + + LN AL QR RL + +
Sbjct: 88 PVW-HYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPD 146
Query: 152 ANPS--IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSF---DEL 206
ANP+ ++ DEP++ LD + + R++ G +V + H D+ ++
Sbjct: 147 ANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSH----DLNHTLRHAHRA 202
Query: 207 FLLKQVGQEISVG 219
+LLK+ G+ ++ G
Sbjct: 203 WLLKR-GKLLASG 214
|
Length = 248 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.004
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQ 194
Q++R+++A P ++ DEP S LD V+R+++ + G+T+V H+
Sbjct: 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 531 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.98 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.98 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.98 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.98 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.98 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.98 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.98 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.98 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.98 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.98 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.98 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.98 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.98 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.98 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.98 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.97 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.97 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.97 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.97 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.97 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.97 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.97 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.97 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.97 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.97 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.97 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.97 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.97 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.97 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.97 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.97 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.97 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.97 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.97 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.97 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.97 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.97 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.97 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.97 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.97 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.97 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.97 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.97 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.97 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.97 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.97 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.97 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.97 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.97 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.97 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.97 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.97 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.97 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.97 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.97 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.97 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.97 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.97 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.97 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.97 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.97 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.97 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.97 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.97 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.97 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.97 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.97 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.97 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.97 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.97 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.97 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.97 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.97 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.97 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.97 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.97 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.97 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.97 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.97 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.97 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.97 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.97 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.97 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.97 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.97 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.97 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.97 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.97 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.96 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.96 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.96 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.96 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.96 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.96 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.96 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.96 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.96 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.96 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.96 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.96 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.96 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.96 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.96 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.96 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.96 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.96 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.96 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.96 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.96 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.96 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.96 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.96 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.96 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.96 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.96 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.96 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.96 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.96 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.96 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.95 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.95 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.95 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.95 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.95 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.95 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.95 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.95 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.95 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.95 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.95 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.95 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.95 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.95 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.95 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.94 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.94 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.94 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.94 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.94 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.94 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.94 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.94 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.94 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.93 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.93 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.93 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.93 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.93 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.93 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.93 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.93 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.93 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.92 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.92 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.92 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.91 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.91 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.91 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.91 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.9 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.9 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.89 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.89 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.89 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.89 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.88 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.88 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.87 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.87 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.87 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.87 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.87 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.86 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.86 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.86 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.82 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.81 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.8 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.78 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.78 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.77 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.76 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.76 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.75 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.75 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.72 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.71 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.71 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.71 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.68 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.68 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.68 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.67 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.67 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.65 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.63 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.61 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.6 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.59 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.57 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.54 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.53 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.53 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.51 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.45 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.45 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.44 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.41 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.4 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.4 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.39 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.31 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.3 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.25 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.25 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.16 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.1 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.04 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.03 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.02 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 98.98 | |
| TIGR03062 | 208 | pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa | 98.98 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.98 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 98.95 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 98.95 | |
| TIGR01247 | 236 | drrB daunorubicin resistance ABC transporter membr | 98.95 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.91 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.88 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.83 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 98.8 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.79 | |
| TIGR00025 | 232 | Mtu_efflux ABC transporter efflux protein, DrrB fa | 98.77 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 98.74 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.74 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.72 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.71 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.68 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.68 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.65 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.63 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.62 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.62 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 98.61 | |
| TIGR03861 | 253 | phenyl_ABC_PedC alcohol ABC transporter, permease | 98.6 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.59 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.57 | |
| TIGR01291 | 253 | nodJ ABC-2 type transporter, NodJ family. Nearly a | 98.55 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 98.52 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.5 | |
| TIGR01248 | 152 | drrC daunorubicin resistance protein C. The model | 98.43 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.36 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.35 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.3 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.29 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.23 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.19 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.14 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 98.14 | |
| PRK15066 | 257 | inner membrane transport permease; Provisional | 98.14 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 98.05 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.03 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.95 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.94 | |
| COG0842 | 286 | ABC-type multidrug transport system, permease comp | 97.94 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 97.89 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 97.68 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 97.66 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 97.64 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 97.62 | |
| PF12698 | 344 | ABC2_membrane_3: ABC-2 family transporter protein; | 97.56 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 97.5 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 97.5 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 97.49 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.44 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.37 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.36 | |
| PRK13764 | 602 | ATPase; Provisional | 97.33 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 97.32 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 97.27 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 97.14 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 97.1 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 97.05 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 97.05 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 97.02 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 96.95 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 96.86 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 96.83 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 96.82 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 96.81 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 96.69 | |
| PF13175 | 415 | AAA_15: AAA ATPase domain | 96.64 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 96.61 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 96.59 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 96.57 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 96.46 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 96.46 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-93 Score=794.98 Aligned_cols=512 Identities=43% Similarity=0.698 Sum_probs=467.7
Q ss_pred CCCccccccceEEEEEeEEEEEe--------CCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEE
Q 042733 16 KRGMVLLFEPHYISLNEIVYSVD--------MPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRN 78 (531)
Q Consensus 16 ~~~~~~~~~~~~l~~~~ls~~~~--------~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~ 78 (531)
++++..|..+..++.+||.+..+ .+++++|+||+|.++|| ||||||||++|+||...|.++|+
T Consensus 770 ~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gd 849 (1391)
T KOG0065|consen 770 KNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGD 849 (1391)
T ss_pred cccccCCCccccccccceEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeE
Confidence 34666665555555555544432 23458999999999999 99999999999999999999999
Q ss_pred EEEcCcccchhhhcceEEEEecCCCCCCCCcHHhH--------------HHHHHHHHHHHHHhcCCchhhhccH------
Q 042733 79 ITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDF--------------THCLYMFIEEGMELVELNPFRQALF------ 138 (531)
Q Consensus 79 i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~--------------~~~~~~~~~~~l~~l~l~~~~~~~~------ 138 (531)
|.++|.|.++..++|.+|||.|+|.|.+.+||+|. .+++.+.++++++.++|++++|..+
T Consensus 850 i~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~G 929 (1391)
T KOG0065|consen 850 ILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSG 929 (1391)
T ss_pred EEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCC
Confidence 99999998878899999999999999999999997 3455588999999999999999988
Q ss_pred ---HHHHHHHHHHHHhhCC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 139 ---EQRKRLTVAVEFVANP-SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 139 ---GerqRv~iA~aL~~~p-~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
+||||++||.+|+.+| .||+|||||||||+.++..+++.+|+++++|+||+||+|||+.++++.||++++|++||+
T Consensus 930 Ls~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGq 1009 (1391)
T KOG0065|consen 930 LSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQ 1009 (1391)
T ss_pred CCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCe
Confidence 4999999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCchhHHHHHHhhcCcccCCCCCCccchhhhhhccccccccCcchHHHhhccHHHHHHHHHHHHhCCCCCC-
Q 042733 215 EISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDIYRNSELYKRAKAVITELSKPAPV- 293 (531)
Q Consensus 215 ~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~n~ad~~~~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~- 293 (531)
+||.||+++.++.+++||+++++++ |+...|||||++|+++...+.....||++.|++|+.+++.++++++++.+.+.
T Consensus 1010 tVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~ 1088 (1391)
T KOG0065|consen 1010 TVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGF 1088 (1391)
T ss_pred EEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccC
Confidence 9999999998889999999998874 77767999999999988777777889999999999999999999999988877
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHHHHhh----------------------------cchHHHHHHHHHHHHHHHHHHH
Q 042733 294 SKSLRFSTQYSQSICTKLFAWSWKLAQQRW----------------------------TKQQHLFNVMVSMYTAVLFLLV 345 (531)
Q Consensus 294 ~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~----------------------------~~~~~~~~~~g~lf~~~~~~~~ 345 (531)
..+...+++|++|+|.|++.++||+++.|| .+.++++|.+|++|+++++.+.
T Consensus 1089 ~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~ 1168 (1391)
T KOG0065|consen 1089 STDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGP 1168 (1391)
T ss_pred CcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhh
Confidence 666777888999999999999999999998 5678899999999999999888
Q ss_pred HhhhhHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHH
Q 042733 346 QNAGSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFY 425 (531)
Q Consensus 346 ~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~ 425 (531)
.+.....+.+..||.+++||+++|+||+.+|++|++++|+|+.++++++|.+++|+|+||.+++.+|++||+.+++..++
T Consensus 1169 ~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lY 1248 (1391)
T KOG0065|consen 1169 NNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLY 1248 (1391)
T ss_pred hhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHH
Confidence 77776778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhccCceeee------
Q 042733 426 FTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFLHHSLEI------ 497 (531)
Q Consensus 426 ~~~~~~~i~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~~~~~~~------ 497 (531)
.+++|+|+.+++||.++|..+++++++++.+|||+++|++.||.|| ||| +||+.|.+++++..++++.+..|
T Consensus 1249 f~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~ 1328 (1391)
T KOG0065|consen 1249 FTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMN 1328 (1391)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCcc
Confidence 9999999999999999999999999999999999999999999999 999 99999999999999999887766
Q ss_pred -ecCCCCccHHHHHHhhcC----CccccceeeEEEE
Q 042733 498 -YRTGQMKQFNNFFTNYFG----FRHDFVGIVAVVV 528 (531)
Q Consensus 498 -~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 528 (531)
.+|+++.+|++|++.++| |.+|...+.+...
T Consensus 1329 ~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~ 1364 (1391)
T KOG0065|consen 1329 YFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVY 1364 (1391)
T ss_pred ccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEE
Confidence 234566899999999999 9988877666543
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-90 Score=813.89 Aligned_cols=512 Identities=51% Similarity=0.829 Sum_probs=453.7
Q ss_pred CccccccceEEEEEeEEEEEeCC-----------CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEE
Q 042733 18 GMVLLFEPHYISLNEIVYSVDMP-----------QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITR 77 (531)
Q Consensus 18 ~~~~~~~~~~l~~~~ls~~~~~~-----------~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G 77 (531)
++.+|..+..++|+||+|.++.+ ++++|+|+|+.++|| |||||||||+|+|+.++|.++|
T Consensus 858 ~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G 937 (1470)
T PLN03140 858 GMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG 937 (1470)
T ss_pred ccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccc
Confidence 45556677899999999998632 236999999999888 9999999999999987777899
Q ss_pred EEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHH--------------HHHHHHHHHHHHhcCCchhhhccH-----
Q 042733 78 NITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFT--------------HCLYMFIEEGMELVELNPFRQALF----- 138 (531)
Q Consensus 78 ~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~--------------~~~~~~~~~~l~~l~l~~~~~~~~----- 138 (531)
++.++|.+.....+++.+|||+|+|.+++.+||+|+. .++.+.++++++.++|.+++|+.+
T Consensus 938 ~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~ 1017 (1470)
T PLN03140 938 DIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGV 1017 (1470)
T ss_pred eEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCC
Confidence 9999998765555677899999999999999999982 122345888999999998877652
Q ss_pred -----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCc
Q 042733 139 -----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVG 213 (531)
Q Consensus 139 -----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G 213 (531)
||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+++|
T Consensus 1018 ~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG 1097 (1470)
T PLN03140 1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1097 (1470)
T ss_pred CCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCC
Confidence 899999999999999999999999999999999999999999998899999999999977889999999998668
Q ss_pred eeeecCCCCCCchhHHHHHHhhcCcccCCCCCCccchhhhhhccccccccCcchHHHhhccHHHHHHHHHHHHhCCCCCC
Q 042733 214 QEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDIYRNSELYKRAKAVITELSKPAPV 293 (531)
Q Consensus 214 ~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~n~ad~~~~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 293 (531)
+++++|++++.++++.+||++++|.+.||+++|||||++|+++...+.....|+.+.|++|+.+++..+.++++..+.+.
T Consensus 1098 ~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~ 1177 (1470)
T PLN03140 1098 QVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPG 1177 (1470)
T ss_pred EEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCC
Confidence 99999998776678999999987777799999999999999876544444568999999999988877777766655544
Q ss_pred CCCCCCCCcccccHHHHHHHHHHHHHHHhh----------------------------cc---hHHHHHHHHHHHHHHHH
Q 042733 294 SKSLRFSTQYSQSICTKLFAWSWKLAQQRW----------------------------TK---QQHLFNVMVSMYTAVLF 342 (531)
Q Consensus 294 ~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~----------------------------~~---~~~~~~~~g~lf~~~~~ 342 (531)
.++....++|+.++++|++.|++|+++.+| ++ .++++++.|++|+++++
T Consensus 1178 ~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~ 1257 (1470)
T PLN03140 1178 ASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLF 1257 (1470)
T ss_pred ccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHH
Confidence 444444567899999999999999999877 12 35788899999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHH
Q 042733 343 LLVQNAGSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFI 422 (531)
Q Consensus 343 ~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~ 422 (531)
.++.++++++|.+..||+||+|||++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++++||+|++++++.
T Consensus 1258 ~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~ 1337 (1470)
T PLN03140 1258 VGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFS 1337 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhccCceeeeecC
Q 042733 423 FFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFLHHSLEIYRT 500 (531)
Q Consensus 423 ~~~~~~~~~~i~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~~~~~~~~~~ 500 (531)
.++++++|+++++++||.++|+.+++++++++++|+||++|+++||+|| |+| +||++|+++|++.|||++.+.+|-++
T Consensus 1338 ~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~ 1417 (1470)
T PLN03140 1338 FLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVP 1417 (1470)
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCC
Confidence 9999999999999999999999999999999999999999999999999 999 99999999999999999877655223
Q ss_pred C--CCccHHHHHHhhcCCccccceeeEEEEe
Q 042733 501 G--QMKQFNNFFTNYFGFRHDFVGIVAVVVG 529 (531)
Q Consensus 501 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (531)
+ ++.++.+|++.+|||+++++|.++++++
T Consensus 1418 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~ 1448 (1470)
T PLN03140 1418 GGAPDPTIKWYIQDHYGYDPDFMGPVAAVLV 1448 (1470)
T ss_pred CCCCCCcHHHHHHHhcCcCcccccchhhhHH
Confidence 3 2368899999999999999999888764
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-83 Score=702.20 Aligned_cols=491 Identities=25% Similarity=0.357 Sum_probs=414.7
Q ss_pred cceEEEEEeEEEEEeCC---CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-eEEEEEEEcCcccchhh
Q 042733 24 EPHYISLNEIVYSVDMP---QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG-YITRNITVSGYPEKQET 90 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~---~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g-~~~G~i~~~g~~~~~~~ 90 (531)
.++.++|+|+++..+.+ .+++|+||||.++|| ||||||||++|+|+.++| ..+|+|.+||++.....
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~ 101 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRS 101 (613)
T ss_pred ccceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhh
Confidence 46789999999998765 378999999999999 999999999999998764 78999999998777778
Q ss_pred hcceEEEEecCCCCCCCCcHHhH--------------HHHHHHHHHHHHHhcCCchhhhccH----------HHHHHHHH
Q 042733 91 FARILGYCEQNDIHSPHDTLYDF--------------THCLYMFIEEGMELVELNPFRQALF----------EQRKRLTV 146 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~--------------~~~~~~~~~~~l~~l~l~~~~~~~~----------GerqRv~i 146 (531)
+++.+|||.|+|.++|++||+|+ ..+++.+++++++.+||.+++|+.+ ||||||+|
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsi 181 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSI 181 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHH
Confidence 89999999999999999999998 3567789999999999999999998 69999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCCch
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSI 226 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~~~ 226 (531)
|.+|++||++|+|||||||||+.++.++++.|++++++|+|||+++|||+.++++.||++++|.+ |+++|+|++ +
T Consensus 182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~G~~----~ 256 (613)
T KOG0061|consen 182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYSGSP----R 256 (613)
T ss_pred HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEecCH----H
Confidence 99999999999999999999999999999999999999999999999999999999999999996 999999997 5
Q ss_pred hHHHHHHhhcCcccCCCCCCccchhhhhhccc-cccccCcchHHHhhc------cHHHHHHHHHHHHhCCCCCCCCCCCC
Q 042733 227 HLISYFEKIFGVSKIKDGYNLATWLLEVTALS-QERAFGVDFSDIYRN------SELYKRAKAVITELSKPAPVSKSLRF 299 (531)
Q Consensus 227 ~~~~~f~~~~~~~~~~~~~n~ad~~~~v~~~~-~~~~~~~~~~~~~~~------s~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (531)
++.+||++.+ . +||++.||+||++|+.+.. ..+.. .+..+.++. .+...+... .......... ..
T Consensus 257 ~~~~ff~~~G-~-~~P~~~Npadf~l~l~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~ 328 (613)
T KOG0061|consen 257 ELLEFFSSLG-F-PCPELENPADFLLDLLSVDSGTREL-EEAVRIAKLINKFSQTDNLKKTLE---ALEKSLSTSK--KV 328 (613)
T ss_pred HHHHHHHhCC-C-CCCCcCChHHHHHHHHccCCCchhH-HhHHHHHHHhhhccccchhhhhHH---HHhhhccccc--cc
Confidence 7889999985 3 5999999999999998742 10000 001111110 111111100 0000000000 11
Q ss_pred CCcccccHHHHHHHHHHHHHHHhh----------------------------cchHHHHHHHHHHHHHHHHHHHHhhhhH
Q 042733 300 STQYSQSICTKLFAWSWKLAQQRW----------------------------TKQQHLFNVMVSMYTAVLFLLVQNAGSL 351 (531)
Q Consensus 300 ~~~~~~~~~~q~~~l~~R~~~~~~----------------------------~~~~~~~~~~g~lf~~~~~~~~~~~~~~ 351 (531)
+.....+||.|++.+.+|.++..+ ++..+++++.|++|+.+.+..+..+.+.
T Consensus 329 ~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~ 408 (613)
T KOG0061|consen 329 EIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGA 408 (613)
T ss_pred ccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 111278999999999999887533 4566778999999999999888888888
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHH
Q 042733 352 QLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGM 431 (531)
Q Consensus 352 ~~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~ 431 (531)
++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|++++++..+++++++.
T Consensus 409 i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~ 488 (613)
T KOG0061|consen 409 VPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGL 488 (613)
T ss_pred HHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhccCceeeeecCC---CCccH
Q 042733 432 MAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFLHHSLEIYRTG---QMKQF 506 (531)
Q Consensus 432 ~i~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~~~~~~~~~~~---~~~~~ 506 (531)
+++++.||...|+.+++++++++++|+||+++.++||.|| |++ +|+++|+||+++.|||.+....|...+ ...++
T Consensus 489 ~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~ 568 (613)
T KOG0061|consen 489 FISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTG 568 (613)
T ss_pred HHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccH
Confidence 9999999999999999999999999999999999999999 999 999999999999999986333343222 11345
Q ss_pred HHHHHhhcCCccccceeeEEEE
Q 042733 507 NNFFTNYFGFRHDFVGIVAVVV 528 (531)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~ 528 (531)
.+ +....++..++.|...+++
T Consensus 569 ~~-~l~~~~~~~~~~~~~l~~l 589 (613)
T KOG0061|consen 569 ED-VLKQLGFEDSSFWLDLLVL 589 (613)
T ss_pred HH-HHHhcCCcccccchhHHHH
Confidence 55 4456899998888766543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-81 Score=744.39 Aligned_cols=501 Identities=27% Similarity=0.432 Sum_probs=421.9
Q ss_pred eEEEEEeEEEEEeC--CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-eEEEEEEEcCcccchhhhcc
Q 042733 26 HYISLNEIVYSVDM--PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG-YITRNITVSGYPEKQETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~--~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g-~~~G~i~~~g~~~~~~~~~~ 93 (531)
..++++||+|+++. +++.+|+|||+.++|| |||||||||+|+|+.++| ..+|+|.+||.+... .+++
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~ 836 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQR 836 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhc
Confidence 35899999999852 2457999999999888 999999999999987654 356999999988643 4678
Q ss_pred eEEEEecCCCCCCCCcHHhHHH--------------HHHHHHHHHHHhcCCchhhhccH---------HHHHHHHHHHHH
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH--------------CLYMFIEEGMELVELNPFRQALF---------EQRKRLTVAVEF 150 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~--------------~~~~~~~~~l~~l~l~~~~~~~~---------GerqRv~iA~aL 150 (531)
.+|||+|++.+++.+||+|+.. ++.++++++++.+++.+++|+.+ ||||||+||++|
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL 916 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVEL 916 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHH
Confidence 8999999999999999999821 23356789999999998877653 899999999999
Q ss_pred hhCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCCchhHH
Q 042733 151 VANPS-IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLI 229 (531)
Q Consensus 151 ~~~p~-lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~~~~~~ 229 (531)
+.+|+ +|+|||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++||++++.|++++.++++.
T Consensus 917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~ 996 (1394)
T TIGR00956 917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTII 996 (1394)
T ss_pred HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHH
Confidence 99997 99999999999999999999999999888999999999999767788999999997559999999987667899
Q ss_pred HHHHhhcCcccCCCCCCccchhhhhhccccccccCcchHHHhhccHHHHHHHHHHHHhCCCCCCC---CCCCCCCccccc
Q 042733 230 SYFEKIFGVSKIKDGYNLATWLLEVTALSQERAFGVDFSDIYRNSELYKRAKAVITELSKPAPVS---KSLRFSTQYSQS 306 (531)
Q Consensus 230 ~~f~~~~~~~~~~~~~n~ad~~~~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 306 (531)
+||++. |.++||++.|||||++|+.+...+.....++.+.|+.|+.++...+.++++....... .+.....+++.|
T Consensus 997 ~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 1075 (1394)
T TIGR00956 997 NYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAAS 1075 (1394)
T ss_pred HHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCC
Confidence 999986 5457999999999999998754333333578899998887766655554443221111 111122468899
Q ss_pred HHHHHHHHHHHHHHHhh----------------------------cchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 042733 307 ICTKLFAWSWKLAQQRW----------------------------TKQQHLFNVMVSMYTAVLFLLVQNAGSLQLVAAVE 358 (531)
Q Consensus 307 ~~~q~~~l~~R~~~~~~----------------------------~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~e 358 (531)
+++|++.|++|+++.+| ++..++++++|++|+.+++.++.+ ...+|.++.|
T Consensus 1076 ~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~-~~~~~~f~~~ 1154 (1394)
T TIGR00956 1076 LWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLI-QQYLPPFVAQ 1154 (1394)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHH
Confidence 99999999999998776 467889999999999888776653 3455778788
Q ss_pred HHHH-HHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhH-------HHHHHHHHHHHHHHHHHHH
Q 042733 359 WTIF-YRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAM-------FFWYLLLMLFIFFYFTFYG 430 (531)
Q Consensus 359 r~v~-~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~-------f~~f~l~~~l~~~~~~~~~ 430 (531)
|.+| +||+++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++.. |++|++++++..++++++|
T Consensus 1155 r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g 1234 (1394)
T TIGR00956 1155 RDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLG 1234 (1394)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 8885 8999999999999999999999999999999999999999999988866 9999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhccCceeeee-------cCC
Q 042733 431 MMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFLHHSLEIY-------RTG 501 (531)
Q Consensus 431 ~~i~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~~~~~~~~-------~~~ 501 (531)
+++++++||.++|+.+++++++++++|+||++|+++||.|| |++ +||++|+++|++.|||++.+++|. .|+
T Consensus 1235 ~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp 1314 (1394)
T TIGR00956 1235 QMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPP 1314 (1394)
T ss_pred HHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCC
Confidence 99999999999999999999999999999999999999999 999 999999999999999998887662 233
Q ss_pred CCccHHHH-------------------------------HHhhcCCccccceeeEEEEe
Q 042733 502 QMKQFNNF-------------------------------FTNYFGFRHDFVGIVAVVVG 529 (531)
Q Consensus 502 ~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 529 (531)
++.+|++| ++..+|+..++.|..++++.
T Consensus 1315 ~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~ 1373 (1394)
T TIGR00956 1315 SGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFI 1373 (1394)
T ss_pred CCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhh
Confidence 33444433 23456888999999888754
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-82 Score=700.85 Aligned_cols=480 Identities=23% Similarity=0.301 Sum_probs=404.1
Q ss_pred CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-eEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcH
Q 042733 41 QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG-YITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTL 110 (531)
Q Consensus 41 ~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g-~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv 110 (531)
++++|+|+|+.++|| |||||||||+|+|+.+++ ..+|+|.+||.+.....+++.+||++|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999888 999999999999986543 4679999999987655678889999999999999999
Q ss_pred HhHH--------------HHHHHHHHHHHHhcCCchhhhccH-----------HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 042733 111 YDFT--------------HCLYMFIEEGMELVELNPFRQALF-----------EQRKRLTVAVEFVANPSIISRDEPISG 165 (531)
Q Consensus 111 ~e~~--------------~~~~~~~~~~l~~l~l~~~~~~~~-----------GerqRv~iA~aL~~~p~lllLDEPtsg 165 (531)
+|+. +++..++++.++.+|+.+++|+.+ ||||||+||++|+.+|++++|||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9972 234456899999999988776643 799999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCCchhHHHHHHhhcCcccCCCCC
Q 042733 166 LDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGY 245 (531)
Q Consensus 166 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~ 245 (531)
||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |++++.|++ +++.+||++++ ..||.+.
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~----~~~~~~f~~~g--~~~p~~~ 269 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSP----DQAVPFFSDLG--HPCPENY 269 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCH----HHHHHHHHHcC--CCCCCCC
Confidence 9999999999999999888999999999998889999999999996 999999997 46889999985 4699999
Q ss_pred Cccchhhhhhcccccccc-----CcchHHHhhccHHHHHHHHHHHHhCCCCCC---CCCCCCCCcccccHHHHHHHHHHH
Q 042733 246 NLATWLLEVTALSQERAF-----GVDFSDIYRNSELYKRAKAVITELSKPAPV---SKSLRFSTQYSQSICTKLFAWSWK 317 (531)
Q Consensus 246 n~ad~~~~v~~~~~~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~q~~~l~~R 317 (531)
|||||++++.+...+... ..++.+.|+.++.+++..........+.+. ........++..++++|+..+++|
T Consensus 270 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R 349 (617)
T TIGR00955 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR 349 (617)
T ss_pred ChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHH
Confidence 999999999765432211 123445555555444433222211111111 111112245678999999999999
Q ss_pred HHHHhh----------------------------cchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCC
Q 042733 318 LAQQRW----------------------------TKQQHLFNVMVSMYTAVLFLLVQNAGSLQLVAAVEWTIFYRESALG 369 (531)
Q Consensus 318 ~~~~~~----------------------------~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~ 369 (531)
+++..| .+..+++++.|++|+++++.++.++....+.++.||++|+||+.+|
T Consensus 350 ~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~ 429 (617)
T TIGR00955 350 SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSG 429 (617)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 988654 4667889999999999998888887777888999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 042733 370 TYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSS 449 (531)
Q Consensus 370 ~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~A~~~~~~ 449 (531)
+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++++||+|++++++..++++++|+++++++||..+|+.++++
T Consensus 430 ~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~ 509 (617)
T TIGR00955 430 LYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPP 509 (617)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhccCcee-eeecCCCC----ccHHHHHHhhcCCccccce
Q 042733 450 FYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFLHHSL-EIYRTGQM----KQFNNFFTNYFGFRHDFVG 522 (531)
Q Consensus 450 ~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 522 (531)
+++++++|+||+++.++||+|| |++ +||++|++++++.|||.+.++ +|...+.. .+ ++++++.||++.++.|
T Consensus 510 ~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~-g~~~l~~~g~~~~~~~ 588 (617)
T TIGR00955 510 FVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSS-GEVILETLSFRNADLY 588 (617)
T ss_pred HHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcC-hHHHHHhcCCCcccHH
Confidence 9999999999999999999999 999 999999999999999997664 55221111 23 4777788999999988
Q ss_pred eeEEEE
Q 042733 523 IVAVVV 528 (531)
Q Consensus 523 ~~~~~~ 528 (531)
..++++
T Consensus 589 ~~~~il 594 (617)
T TIGR00955 589 LDLIGL 594 (617)
T ss_pred HHHHHH
Confidence 876654
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-81 Score=698.53 Aligned_cols=457 Identities=22% Similarity=0.278 Sum_probs=378.1
Q ss_pred ceEEEEEeEEEEEeCC---------------------------CccccccEEEEEcCC---------CchHHHHHHHHhC
Q 042733 25 PHYISLNEIVYSVDMP---------------------------QIGDLNSLSGAFRPG---------GAGKTTLMDVLAG 68 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~---------------------------~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G 68 (531)
++.+++.|++|+.+.. ++.+|+|+|+.++|| |||||||||+|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 6788999999887532 346999999999888 9999999999999
Q ss_pred CCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHH--------------HHHHHHHHHHHHhcCCchhh
Q 042733 69 RKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFT--------------HCLYMFIEEGMELVELNPFR 134 (531)
Q Consensus 69 ~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~--------------~~~~~~~~~~l~~l~l~~~~ 134 (531)
+.+++..+|+|.+||.+... ..++.+|||+|++.+++.+||+|+. ++..++++++++.+||.+++
T Consensus 117 ~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 86544468999999987643 3456799999999999999999972 12234578899999998877
Q ss_pred hcc----------HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccC
Q 042733 135 QAL----------FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFD 204 (531)
Q Consensus 135 ~~~----------~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d 204 (531)
|+. .|||||++||++|+++|++|+|||||+|||+.++.++++.|++++++|+|||+++|||+.++.+.||
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 543 2899999999999999999999999999999999999999999988899999999999877889999
Q ss_pred eEEEEccCceeeecCCCCCCchhHHHHHHhhcCcccCCCCCCccchhhhhhccccccc------cC---cchHHHhhccH
Q 042733 205 ELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQERA------FG---VDFSDIYRNSE 275 (531)
Q Consensus 205 ~v~lL~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~n~ad~~~~v~~~~~~~~------~~---~~~~~~~~~s~ 275 (531)
++++|++ |++++.|++ +++.+||++++ .+||.+.|||||++|+++...+.. .. ....+.|+..
T Consensus 276 ~iilL~~-G~iv~~G~~----~~~~~~f~~~G--~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 347 (659)
T PLN03211 276 SVLVLSE-GRCLFFGKG----SDAMAYFESVG--FSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL- 347 (659)
T ss_pred eEEEecC-CcEEEECCH----HHHHHHHHHCC--CCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh-
Confidence 9999986 999999987 57899999985 369999999999999986532100 00 0112233221
Q ss_pred HHHHHHHHHHH--hCC-CCC-----CCCCCC-CCCcccccHHHHHHHHHHHHHHHhh-----------------------
Q 042733 276 LYKRAKAVITE--LSK-PAP-----VSKSLR-FSTQYSQSICTKLFAWSWKLAQQRW----------------------- 323 (531)
Q Consensus 276 ~~~~~~~~~~~--~~~-~~~-----~~~~~~-~~~~~~~~~~~q~~~l~~R~~~~~~----------------------- 323 (531)
..++.....+. ... ..+ ..+... ....+..+||+|+.+|++|+++...
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~~~ll~G~lf 427 (659)
T PLN03211 348 LAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMW 427 (659)
T ss_pred ccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111110 000 000 001000 1123457899999999999987511
Q ss_pred --cchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheec
Q 042733 324 --TKQQHLFNVMVSMYTAVLFLLVQNAGSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYA 401 (531)
Q Consensus 324 --~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~ 401 (531)
.+..+++++.|++||++++.++.++++.++.|+.||+||+||+++|+|++++|++|++++|+|+.++.+++|++|+||
T Consensus 428 ~~~~~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~ 507 (659)
T PLN03211 428 WHSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYW 507 (659)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeE
Confidence 345678999999999999988877777789999999999999999999999999999999999999999999999999
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchH
Q 042733 402 MIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGL 479 (531)
Q Consensus 402 ~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~ 479 (531)
|+||++++++||+|++++++.+++++++|+++++++||.++|+.+++++++++++|+||+++ +||+|| |++ +||++
T Consensus 508 m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~ 585 (659)
T PLN03211 508 MAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTF 585 (659)
T ss_pred cCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997 799999 999 99999
Q ss_pred HHHHHHHHhhccC
Q 042733 480 LGISGILDLDFLH 492 (531)
Q Consensus 480 y~~~~l~~nef~~ 492 (531)
|+||+++.|||++
T Consensus 586 y~~eal~~nef~~ 598 (659)
T PLN03211 586 YSYRLLINVQYGE 598 (659)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999974
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-80 Score=736.42 Aligned_cols=478 Identities=21% Similarity=0.270 Sum_probs=406.8
Q ss_pred cccccEEEEEcCC---------CchHHHHHHHHhCCCCC--ceEEEEEEEcCcccch--hhhcceEEEEecCCCCCCCCc
Q 042733 43 GDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG--GYITRNITVSGYPEKQ--ETFARILGYCEQNDIHSPHDT 109 (531)
Q Consensus 43 ~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~--g~~~G~i~~~g~~~~~--~~~~~~igyv~Q~~~~~~~lt 109 (531)
++|+|+|+.++|| |||||||||+|+|+.++ ...+|+|.++|.+... ...++.++|++|+|.+++.+|
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT 154 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT 154 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence 5899999999888 99999999999998532 2368999999987542 234567999999999999999
Q ss_pred HHhHHH------------------HHHHH-HHHHHHhcCCchhhhccH----------HHHHHHHHHHHHhhCCCeEEEe
Q 042733 110 LYDFTH------------------CLYMF-IEEGMELVELNPFRQALF----------EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 110 v~e~~~------------------~~~~~-~~~~l~~l~l~~~~~~~~----------GerqRv~iA~aL~~~p~lllLD 160 (531)
|+|+.. +..++ ++++++.+||++++++.+ ||||||+||++|+.+|++++||
T Consensus 155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllD 234 (1394)
T TIGR00956 155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWD 234 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEe
Confidence 999721 01112 356789999999887653 8999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCCchhHHHHHHhhcCcc
Q 042733 161 EPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVS 239 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~ 239 (531)
|||+|||+.++.++++.|++++++ |+|||+++|||+.++++.||++++|++ |+++++|++ +++.+||++++ .
T Consensus 235 EPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG--~ 307 (1394)
T TIGR00956 235 NATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMG--F 307 (1394)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcC--C
Confidence 999999999999999999999875 999999999998789999999999996 999999986 57889999985 3
Q ss_pred cCCCCCCccchhhhhhcccccc----------ccCcchHHHhhccHHHHHHHHHHHHhCCCCC---------------CC
Q 042733 240 KIKDGYNLATWLLEVTALSQER----------AFGVDFSDIYRNSELYKRAKAVITELSKPAP---------------VS 294 (531)
Q Consensus 240 ~~~~~~n~ad~~~~v~~~~~~~----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---------------~~ 294 (531)
.||++.|||||++++++++.+. ....++++.|++|+.+++..+.+++.....+ ..
T Consensus 308 ~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1394)
T TIGR00956 308 KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQS 387 (1394)
T ss_pred CCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhc
Confidence 6999999999999997654211 1124688889998877766554443211100 00
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHHHhh----------------------------cchHHHHHHHHHHHHHHHHHHHH
Q 042733 295 KSLRFSTQYSQSICTKLFAWSWKLAQQRW----------------------------TKQQHLFNVMVSMYTAVLFLLVQ 346 (531)
Q Consensus 295 ~~~~~~~~~~~~~~~q~~~l~~R~~~~~~----------------------------~~~~~~~~~~g~lf~~~~~~~~~ 346 (531)
+.....++|..|+++|+++|++|+++..| .++.+++++.|++|+++++.++.
T Consensus 388 ~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~ 467 (1394)
T TIGR00956 388 KRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFS 467 (1394)
T ss_pred ccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 11122346789999999999999998765 46678999999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHH
Q 042733 347 NAGSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYF 426 (531)
Q Consensus 347 ~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~ 426 (531)
++.++. .+..||+||+||+.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.+++
T Consensus 468 ~~~~i~-~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~ 546 (1394)
T TIGR00956 468 SLLEIA-SMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAM 546 (1394)
T ss_pred HHHHHH-HHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHH
Confidence 887764 4567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhccCceeeee---cCC
Q 042733 427 TFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFLHHSLEIY---RTG 501 (531)
Q Consensus 427 ~~~~~~i~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~~~~~~~~---~~~ 501 (531)
+++|+++++++||..+|+.+++++++++++|+||++|+++||+|| |++ +||++|+|||++.|||++.+++|. |.|
T Consensus 547 ~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g 626 (1394)
T TIGR00956 547 SHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSG 626 (1394)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCC
Confidence 999999999999999999999999999999999999999999999 999 999999999999999998888772 211
Q ss_pred C---------------------C-ccHHHHHHhhcCCccccceeeEEEE
Q 042733 502 Q---------------------M-KQFNNFFTNYFGFRHDFVGIVAVVV 528 (531)
Q Consensus 502 ~---------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (531)
+ . +++.+|+...|||+++|.|..++++
T Consensus 627 ~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil 675 (1394)
T TIGR00956 627 GGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGII 675 (1394)
T ss_pred CCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHH
Confidence 1 1 3677999888999999999988764
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-79 Score=721.39 Aligned_cols=476 Identities=20% Similarity=0.216 Sum_probs=394.1
Q ss_pred cccccEEEEEcCC---------CchHHHHHHHHhCCCCC-ceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHh
Q 042733 43 GDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG-GYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYD 112 (531)
Q Consensus 43 ~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~-g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e 112 (531)
.+|+|+||.++|| |||||||||+|+|+.++ ..++|+|.+||.+..+...++.++|++|+|.+++.+||+|
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 258 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE 258 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHH
Confidence 5899999999888 99999999999998653 2468999999987654344678999999999999999999
Q ss_pred HHHH------------------HH---------------------------HHHHHHHHhcCCchhhhccH---------
Q 042733 113 FTHC------------------LY---------------------------MFIEEGMELVELNPFRQALF--------- 138 (531)
Q Consensus 113 ~~~~------------------~~---------------------------~~~~~~l~~l~l~~~~~~~~--------- 138 (531)
+... .+ ..++++++.+||++++|+.+
T Consensus 259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS 338 (1470)
T PLN03140 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS 338 (1470)
T ss_pred HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence 7210 00 12456889999998876543
Q ss_pred -HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceee
Q 042733 139 -EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI 216 (531)
Q Consensus 139 -GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v 216 (531)
||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||+|++|++ |+++
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~iv 417 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIV 417 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEE
Confidence 899999999999999999999999999999999999999999987 5899999999998889999999999996 9999
Q ss_pred ecCCCCCCchhHHHHHHhhcCcccCCCCCCccchhhhhhccccccc------------cCcchHHHhhccHHHHHHHHHH
Q 042733 217 SVGPLGPSSIHLISYFEKIFGVSKIKDGYNLATWLLEVTALSQERA------------FGVDFSDIYRNSELYKRAKAVI 284 (531)
Q Consensus 217 ~~G~~~~~~~~~~~~f~~~~~~~~~~~~~n~ad~~~~v~~~~~~~~------------~~~~~~~~~~~s~~~~~~~~~~ 284 (531)
|+||+ +++.+||++++ ..||++.|||||++++++..++.. ...++++.|++++.+++...++
T Consensus 418 y~G~~----~~~~~yF~~lG--f~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~ 491 (1470)
T PLN03140 418 YQGPR----DHILEFFESCG--FKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENEL 491 (1470)
T ss_pred EeCCH----HHHHHHHHHcC--CCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHH
Confidence 99986 57889999985 369999999999999987543211 1235788888887766554433
Q ss_pred HHhCCCCCCCCCCCCCCcccccHHHHHHHHHHHHHHHhh-------------------------c------chHHHHHHH
Q 042733 285 TELSKPAPVSKSLRFSTQYSQSICTKLFAWSWKLAQQRW-------------------------T------KQQHLFNVM 333 (531)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~-------------------------~------~~~~~~~~~ 333 (531)
+.-.............++|..+++.|++.|++|+++..| + +..+.+.+.
T Consensus 492 ~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~ 571 (1470)
T PLN03140 492 SVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYI 571 (1470)
T ss_pred hhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Confidence 221000000111112346889999999999999987654 1 123456788
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHH
Q 042733 334 VSMYTAVLFLLVQNAGSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFF 413 (531)
Q Consensus 334 g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~ 413 (531)
|++||++++.+++++.++ +.+..||+||+|||+.++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||
T Consensus 572 g~lff~~l~~~~~~~~~l-~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff 650 (1470)
T PLN03140 572 GALLFSMIINMFNGFAEL-ALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFF 650 (1470)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHH
Confidence 999999999888877665 6677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhcc
Q 042733 414 WYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFL 491 (531)
Q Consensus 414 ~f~l~~~l~~~~~~~~~~~i~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~ 491 (531)
+|++++++++++++++|+++++++||+.+|+.+++++++++++|+||+||+++||+|| |++ +||++|||+|+++|||.
T Consensus 651 ~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~ 730 (1470)
T PLN03140 651 KQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMF 730 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999 999 99999999999999998
Q ss_pred Cceeee-ecCCCCccHHHHHHhhcCCccccc--eeeEE
Q 042733 492 HHSLEI-YRTGQMKQFNNFFTNYFGFRHDFV--GIVAV 526 (531)
Q Consensus 492 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 526 (531)
+..+.+ .+.+...+.|++++..+||..++. |+.++
T Consensus 731 ~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~ 768 (1470)
T PLN03140 731 APRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVG 768 (1470)
T ss_pred CccccCcccCCCCcccHHHHHHhcCcCccccchhhhHH
Confidence 776642 112222334455557899997655 54443
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-75 Score=653.84 Aligned_cols=478 Identities=22% Similarity=0.311 Sum_probs=415.5
Q ss_pred cccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-eEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHh
Q 042733 43 GDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG-YITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYD 112 (531)
Q Consensus 43 ~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g-~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e 112 (531)
++|+|+||.++|| |||||||||+|+|..+.. ...|++.+||.+.++...++.++|++|+|.|+|.+||+|
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre 208 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE 208 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence 6999999999999 999999999999976532 235689999998765444788999999999999999999
Q ss_pred HH---------------HHHH----HHHHHHHHhcCCchhhhccH----------HHHHHHHHHHHHhhCCCeEEEeCCC
Q 042733 113 FT---------------HCLY----MFIEEGMELVELNPFRQALF----------EQRKRLTVAVEFVANPSIISRDEPI 163 (531)
Q Consensus 113 ~~---------------~~~~----~~~~~~l~~l~l~~~~~~~~----------GerqRv~iA~aL~~~p~lllLDEPt 163 (531)
+. ..++ ...+.+++.+||++++|+.+ ||||||++|.+++.+|+++++||+|
T Consensus 209 TldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 209 TLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred hhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence 81 1111 25678899999999999998 7999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCCchhHHHHHHhhcCcccCC
Q 042733 164 SGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGVSKIK 242 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~~~~~~~~f~~~~~~~~~~ 242 (531)
+|||+.++.++++.|+++++. +.|++++.|||+.+++++||+|++|.+ |+++|+||. +++.+||++++ ..||
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~G--f~cP 361 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMG--FKCP 361 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcC--ccCC
Confidence 999999999999999999985 899999999999999999999999997 999999997 57899999985 3599
Q ss_pred CCCCccchhhhhhcccccc-----------ccC-cchHHHhhccHHHHHHHHHHHHhCCCCCCCCCCCCCCcccccHHHH
Q 042733 243 DGYNLATWLLEVTALSQER-----------AFG-VDFSDIYRNSELYKRAKAVITELSKPAPVSKSLRFSTQYSQSICTK 310 (531)
Q Consensus 243 ~~~n~ad~~~~v~~~~~~~-----------~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 310 (531)
++.++|||+.++++..++. ... .++.+.|.+++.+++...+++.-.......+.....++|..++|.|
T Consensus 362 ~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~q 441 (1391)
T KOG0065|consen 362 PRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQ 441 (1391)
T ss_pred CccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHH
Confidence 9999999999998732221 111 4788899999888877644432222222233334457899999999
Q ss_pred HHHHHHHHHHHhh-----------------------------cchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 042733 311 LFAWSWKLAQQRW-----------------------------TKQQHLFNVMVSMYTAVLFLLVQNAGSLQLVAAVEWTI 361 (531)
Q Consensus 311 ~~~l~~R~~~~~~-----------------------------~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v 361 (531)
++.|+.|.+++.. .+..+...+.|++||++++.++++++++ +...+.|||
T Consensus 442 vk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~~~~pv 520 (1391)
T KOG0065|consen 442 VKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEI-ALTFQRLPV 520 (1391)
T ss_pred HHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHH-HHHHhhcch
Confidence 9999999987543 2345578899999999999999999887 445579999
Q ss_pred HHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 042733 362 FYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQ 441 (531)
Q Consensus 362 ~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~ 441 (531)
|+|||+..+|++++|.++.++.++|+.++.+++|.+|+||++||.++|++||.|+|+++++++|++++++++++++|++.
T Consensus 521 ~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~ 600 (1391)
T KOG0065|consen 521 FYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLS 600 (1391)
T ss_pred HHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhccCceeeeecCCCC----------------
Q 042733 442 IAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFLHHSLEIYRTGQM---------------- 503 (531)
Q Consensus 442 ~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~~~~~~~~~~~~~---------------- 503 (531)
+|+.++++.+++..+++||+||.++||+|| |++ +||+.|+||++++|||++++++|-|.||+
T Consensus 601 ~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~ 680 (1391)
T KOG0065|consen 601 IANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGA 680 (1391)
T ss_pred HHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhcc
Confidence 999999999999999999999999999999 999 99999999999999999999988533332
Q ss_pred ------ccHHHHHHhhcCCccccceeeEEEE
Q 042733 504 ------KQFNNFFTNYFGFRHDFVGIVAVVV 528 (531)
Q Consensus 504 ------~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (531)
+.+.+|+...|+|.+.|.|+.++++
T Consensus 681 ~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gil 711 (1391)
T KOG0065|consen 681 TLGNDYVSGRDYLKVQYQYEYKWYWRNFGIL 711 (1391)
T ss_pred ccCceEEecccccccccccccceeEeehhHH
Confidence 4567888888899999999998864
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=322.58 Aligned_cols=190 Identities=25% Similarity=0.296 Sum_probs=168.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc----hhhhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK----QETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~----~~~~~~ 93 (531)
.|+++||+++|+ +..+|++||+.+.+| |||||||||||.|+... .+|+|.++|.... ....|+
T Consensus 2 mi~i~~l~K~fg--~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~--~~G~I~i~g~~~~~~~~~~~~R~ 77 (240)
T COG1126 2 MIEIKNLSKSFG--DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP--DSGSITVDGEDVGDKKDILKLRR 77 (240)
T ss_pred eEEEEeeeEEeC--CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC--CCceEEECCEeccchhhHHHHHH
Confidence 478999999995 678999999887776 99999999999998653 4789999996442 235788
Q ss_pred eEEEEecCCCCCCCCcHHhH------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDIHSPHDTLYDF------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.+|+|+|+.++||++||.|| +.+.++...+.|+.+||.+.++..+ ||||||+|||||+.+|++
T Consensus 78 ~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~v 157 (240)
T COG1126 78 KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKV 157 (240)
T ss_pred hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCE
Confidence 99999999999999999998 3455667888999999999988876 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++|||||+|||+...++++.+++++++|.|.|++||+... +.+.+|||++|++ |+++..|+++
T Consensus 158 mLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~g~p~ 221 (240)
T COG1126 158 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEEGPPE 221 (240)
T ss_pred EeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEecCHH
Confidence 99999999999999999999999999999999999999874 5678999999996 9999999764
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=312.75 Aligned_cols=191 Identities=25% Similarity=0.350 Sum_probs=166.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcC---------CCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRP---------GGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~---------gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++||+++|+ ++.+|+|+|+.+.+ ||||||||||+|+|..++ .+|+|.++|.+... .++.|.
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i~~~~~kelAk~ 77 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDIASLSPKELAKK 77 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCchhhcCHHHHhhh
Confidence 468889999995 56788888866655 499999999999997653 46899999987643 457789
Q ss_pred EEEEecCCCCCCCCcHHhH---------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 95 LGYCEQNDIHSPHDTLYDF---------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~---------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
+||+||+....+.+||+|. ..+..+.+++.++.+++.+.+++.+ ||||||.|||||+++|
T Consensus 78 ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~ 157 (258)
T COG1120 78 LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQET 157 (258)
T ss_pred EEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCC
Confidence 9999999988889999986 1233456889999999999998877 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
++|+||||||+||...+.+++++++++++ +|+|||+++||++. ..++||++++|++ |++++.|+|++
T Consensus 158 ~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a~G~p~e 225 (258)
T COG1120 158 PILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVAQGTPEE 225 (258)
T ss_pred CEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEeecCcch
Confidence 99999999999999999999999999995 59999999999985 6789999999996 99999999865
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=322.43 Aligned_cols=190 Identities=27% Similarity=0.376 Sum_probs=161.0
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARIL 95 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~i 95 (531)
.++++||++.|+. ++.+|+|||+.+++| |||||||+|+|+|...+ .+|+|.++|.+... ...++.+
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~~~~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCccCHHHHHhhe
Confidence 3566677777741 346677776666655 99999999999998764 57999999987543 4567889
Q ss_pred EEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEE
Q 042733 96 GYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISR 159 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllL 159 (531)
||++|++.+++.+|++|+- ....++++++++.++|.+.+++.+ |||||++||+||+++|+++||
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliL 160 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLIL 160 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999981 123467899999999998555444 999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 160 DEPISGLDARAATTVIRMVRNTVDMG-RTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 160 DEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||||+||||.++.++++.|++++++| +||+++||+++ ++...||+|++|++ |++++.|++
T Consensus 161 DEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~~ 221 (293)
T COG1131 161 DEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGTP 221 (293)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence 99999999999999999999999986 89999999998 68888999999996 999999975
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=312.37 Aligned_cols=191 Identities=21% Similarity=0.317 Sum_probs=165.6
Q ss_pred EEEEeEEEEEeCC---CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---h---h
Q 042733 28 ISLNEIVYSVDMP---QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---Q---E 89 (531)
Q Consensus 28 l~~~~ls~~~~~~---~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~---~ 89 (531)
|+++++++.|... ...+|+|||+.+.+| |||||||+|+|.++..+ .+|+|.++|.+.. . .
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEEcCEecccCChHHHH
Confidence 5777777777642 125777777777766 99999999999997653 4799999996542 1 3
Q ss_pred hhcceEEEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhC
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVAN 153 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~ 153 (531)
..|+.||+++|+.+++...||.++ +.+.++++.+.++.+||.+.++..+ ||||||+|||||+.+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~ 159 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN 159 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence 467899999999999999999998 4667789999999999999888876 999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++|++|||||+|||.+.+.++++|+++.++ |.||+++||+++. +.+.||||.+|++ |+++..|+..
T Consensus 160 P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~~-G~lvE~G~v~ 227 (339)
T COG1135 160 PKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLDQ-GRLVEEGTVS 227 (339)
T ss_pred CCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEeeC-CEEEEeccHH
Confidence 9999999999999999999999999999875 9999999999873 6779999999996 9999999875
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=299.58 Aligned_cols=204 Identities=23% Similarity=0.287 Sum_probs=172.1
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hh
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ET 90 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~ 90 (531)
..|++++|+++++ ++.+++|+++.+.+| |+|||||||+|.|+.++ .+|+|.+.|.+... ..
T Consensus 7 ~~I~vr~v~~~fG--~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 7 PLIEVRGVTKSFG--DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred ceEEEeeeeeecC--CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcchhccCHHHHHH
Confidence 4578888888884 567888888777776 99999999999998764 57999999987532 24
Q ss_pred hcceEEEEecCCCCCCCCcHHhH------------HHHHHHHHHHHHHhcCCchh-hhccH-----HHHHHHHHHHHHhh
Q 042733 91 FARILGYCEQNDIHSPHDTLYDF------------THCLYMFIEEGMELVELNPF-RQALF-----EQRKRLTVAVEFVA 152 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~ 152 (531)
.++++|+++|+..+|..+||+|| +...++.+...++.+||... .+..+ |||||+++|||++.
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial 162 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL 162 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc
Confidence 67889999999999999999998 33455667778899999887 55554 99999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCC----chh
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPS----SIH 227 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~----~~~ 227 (531)
||+++++||||+||||.++..+-++++++.+. |.|++++|||.+ +++..|||+++|.+ |+++..|++++. ...
T Consensus 163 dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gkv~~~Gt~~el~~sd~P~ 240 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GKVIAEGTPEELLASDDPW 240 (263)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CEEEEeCCHHHHHhCCCHH
Confidence 99999999999999999999999999999986 999999999988 58899999999996 999999998642 234
Q ss_pred HHHHHHhh
Q 042733 228 LISYFEKI 235 (531)
Q Consensus 228 ~~~~f~~~ 235 (531)
+.+||...
T Consensus 241 v~qf~~G~ 248 (263)
T COG1127 241 VRQFFNGI 248 (263)
T ss_pred HHHHhcCC
Confidence 55666543
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=306.53 Aligned_cols=191 Identities=24% Similarity=0.354 Sum_probs=162.8
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEc---------CCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFR---------PGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~---------~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..++++|++++|+. +++|+|||+.+. |||||||||+|+|.|..++ .+|+|.++|.+.....-+.+||
T Consensus 3 ~~i~v~nl~v~y~~--~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p--~~G~i~~~g~~~~~~~~~~~Ig 78 (254)
T COG1121 3 PMIEVENLTVSYGN--RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLRIG 78 (254)
T ss_pred cEEEEeeeEEEECC--EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CcceEEEccccccccccCCeEE
Confidence 45788899998863 258888887665 4599999999999997653 5799999998765443356899
Q ss_pred EEecCC--CCCCCCcHHhH---------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 97 YCEQND--IHSPHDTLYDF---------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 97 yv~Q~~--~~~~~ltv~e~---------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
||||.. ......||+|. ....++.++++|+.+|+.+++++.+ ||+|||.|||||+++|
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p 158 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNP 158 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCC
Confidence 999954 23345899997 1233578999999999999999887 8999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
++|+|||||+|+|+.++..++++|++++++|+||++++||++ .+...||+|++|+ +++++.|++++
T Consensus 159 ~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G~~~~ 224 (254)
T COG1121 159 DLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASGPPEE 224 (254)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEeccChhh
Confidence 999999999999999999999999999989999999999998 5888999999997 47999999875
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=304.65 Aligned_cols=190 Identities=21% Similarity=0.312 Sum_probs=169.8
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~i 95 (531)
++++|+|++|. ++.+++|+|+.+.+| ||||||+||+|.++..+ .+|+|.++|.+... ..+|+.|
T Consensus 2 I~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred ceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecccCCHHHHHHhh
Confidence 68889998885 567888888888777 99999999999998764 57999999987643 4688999
Q ss_pred EEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCch--hhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 96 GYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNP--FRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~--~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
|||-|+-.+||++||.|| +...+++++++++.+||++ ++++.+ ||+|||.+||||+.+|++|
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il 157 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL 157 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence 999999999999999998 4556788999999999975 677766 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
++|||+++|||.++.++.+.++++.++ |+|||++|||.+ |...+.||+++|++ |+++-.++|++
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~-G~i~Q~~~P~~ 222 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDA-GEIVQYDTPDE 222 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecC-CeEEEeCCHHH
Confidence 999999999999999999999999876 999999999998 68899999999996 99999998753
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=297.35 Aligned_cols=194 Identities=23% Similarity=0.277 Sum_probs=169.1
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc------hhh
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK------QET 90 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~------~~~ 90 (531)
..|+++||++.|+ +++++|+|||+.+.+| |||||||||+|.|..++ .+|+|.++|.... ...
T Consensus 2 ~~i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~--t~G~i~~~g~~i~~~~~k~lr~ 78 (258)
T COG3638 2 MMIEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP--TSGEILFNGVQITKLKGKELRK 78 (258)
T ss_pred ceEEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC--CcceEEecccchhccchHHHHH
Confidence 3689999999997 4678999999999888 99999999999997664 4689999996542 134
Q ss_pred hcceEEEEecCCCCCCCCcHHhH-------------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHH
Q 042733 91 FARILGYCEQNDIHSPHDTLYDF-------------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTV 146 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~-------------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~i 146 (531)
+|+.+||++|++++.+.++|.++ .++.+..+-+.++.+|+.+.+..+. ||+|||+|
T Consensus 79 ~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 79 LRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred HHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHH
Confidence 67899999999999999999998 1334556777899999988765554 89999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPS 224 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~ 224 (531)
||||+++|++++.|||+++|||.+++++++.|+++++ +|.|||++.|+.+. +.++|||++-|++ |+++|+||+++.
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~-G~ivfDg~~~el 235 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKA-GRIVFDGPASEL 235 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecC-CcEEEeCChhhh
Confidence 9999999999999999999999999999999999987 49999999999885 6789999999996 999999998653
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=290.26 Aligned_cols=199 Identities=20% Similarity=0.281 Sum_probs=168.0
Q ss_pred hhhhcccCCCccccccceEEEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc-
Q 042733 9 IEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK- 87 (531)
Q Consensus 9 i~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~- 87 (531)
|++.+++|+.... .=.++||||.... ..|.|.+|||||||||+||+|+++..+ .+|.+.++|.+..
T Consensus 2 l~v~~l~K~y~~~-----v~AvrdVSF~ae~------Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~~ 68 (245)
T COG4555 2 LEVTDLTKSYGSK-----VQAVRDVSFEAEE------GEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVR 68 (245)
T ss_pred eeeeehhhhccCH-----HhhhhheeEEecc------ceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeeccccc
Confidence 5556666653221 1145566666642 246677788899999999999998663 4799999998753
Q ss_pred -hhhhcceEEEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHH
Q 042733 88 -QETFARILGYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEF 150 (531)
Q Consensus 88 -~~~~~~~igyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL 150 (531)
+...++.+|.++.+..++..+|++|+ ..+.+.+++++.+.+++.++.|+.+ |+||||+|||||
T Consensus 69 ~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 69 DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 34578899999988899999999998 3455678899999999999999988 899999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++|++++|||||||||..+.+.+.+.+++++++|++||++||.++ |+..+||+|++|++ |++++.|+++
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~ 218 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIE 218 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHH
Confidence 9999999999999999999999999999999989999999999987 78889999999996 9999999874
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=295.31 Aligned_cols=178 Identities=23% Similarity=0.332 Sum_probs=158.0
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.+++++++++|+ ...+|+|+|+.+.+| |||||||||+|+|+.++ .+|+|.++|.+.. .....+||
T Consensus 3 ~l~i~~v~~~f~--~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v~--~p~~~~~~ 76 (248)
T COG1116 3 LLEIEGVSKSFG--GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPVT--GPGPDIGY 76 (248)
T ss_pred eEEEEeeEEEeC--ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCcccC--CCCCCEEE
Confidence 578999999996 368999999998888 99999999999998764 4789999998863 23567899
Q ss_pred EecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
|+|++.++|++||.+| +.+...++++.++.+||.+..++.+ ||||||+|||||+.+|++|+|||
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE 156 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE 156 (248)
T ss_pred EeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999999999998 2334567899999999999988877 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 162 PISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
|++.||+.++..+.+.|.++.+ .++||+++|||.+ |...+.|||++|.+
T Consensus 157 PFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~ 206 (248)
T COG1116 157 PFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSN 206 (248)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecC
Confidence 9999999999999999999876 4899999999998 56778999999985
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=281.34 Aligned_cols=189 Identities=22% Similarity=0.322 Sum_probs=164.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETF 91 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~ 91 (531)
+|+++||++.|+.+ .++|+|||+.+.+| |||||||||+|.+...+ ..|+|.++|.+... ..+
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p--t~G~i~~~~~dl~~l~~~~iP~L 77 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP--TRGKILVNGHDLSRLKGREIPFL 77 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC--CCceEEECCeecccccccccchh
Confidence 36899999999865 67999999998888 99999999999996543 46899999987532 236
Q ss_pred cceEEEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCC
Q 042733 92 ARILGYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ 155 (531)
||+||+|+||..+.+..||.|+ ..+.++++.++++.+||.+.++..+ ||||||+||||++.+|+
T Consensus 78 RR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred hheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCC
Confidence 8899999999999999999998 4566788999999999998887765 99999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 156 IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
+|+.||||.+|||..+.++++++.++.+.|+||+++|||.+. +...-.|++.|.+ |+++....
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~~-Grl~~d~~ 220 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALED-GRLVRDES 220 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEeC-CEEEeccc
Confidence 999999999999999999999999999999999999999653 4445578888886 99987653
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=308.25 Aligned_cols=204 Identities=25% Similarity=0.355 Sum_probs=161.5
Q ss_pred CCchhhhhhhcccCCCccccccceEEEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEc
Q 042733 3 PMTEAAIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVS 82 (531)
Q Consensus 3 ~m~~~~i~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~ 82 (531)
||.+.+|++++++++... ...++|+++++.. ..+.+.+||||||||||+|+|+|..++ .+|++.++
T Consensus 2 ~~~~~~i~i~~l~k~~~~------~~~l~~vsl~i~~------Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~ 67 (306)
T PRK13537 2 PMSVAPIDFRNVEKRYGD------KLVVDGLSFHVQR------GECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLC 67 (306)
T ss_pred CCCCceEEEEeEEEEECC------eEEEecceEEEeC------CcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEEC
Confidence 555555555555554211 0134555555432 134555666699999999999998653 47999999
Q ss_pred Ccccch--hhhcceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHH
Q 042733 83 GYPEKQ--ETFARILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRL 144 (531)
Q Consensus 83 g~~~~~--~~~~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv 144 (531)
|.+... ...++.+||++|++.+++.+|++|+.. ....+++++++.+++.+..++.+ |||||+
T Consensus 68 G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 147 (306)
T PRK13537 68 GEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRL 147 (306)
T ss_pred CEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHH
Confidence 987532 245678999999999999999999821 12345678889999988777766 999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+||+||+++|++|+|||||+|||+.+++.+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+++
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~~~ 223 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGAPH 223 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999999999878999999999987 67889999999996 9999999863
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=288.60 Aligned_cols=182 Identities=24% Similarity=0.367 Sum_probs=154.1
Q ss_pred EEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---h---hh
Q 042733 28 ISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---Q---ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~---~~ 90 (531)
++++||++.|..+. ..+|+++|+.+++| ||||||||++|.|...+ .+|.+.++|.+.. + ..
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHH
Confidence 46889998886443 26899999888887 99999999999997654 4689999996542 1 12
Q ss_pred -hcceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhh-ccH-----HHHHHHHHHHHHhh
Q 042733 91 -FARILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQ-ALF-----EQRKRLTVAVEFVA 152 (531)
Q Consensus 91 -~~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~-~~~-----GerqRv~iA~aL~~ 152 (531)
.++.+|||+|+..+.|.+||.|+.. ......+++++.+|+.+..+ +.+ ||||||+|||||+.
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~ 159 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN 159 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence 3567999999999999999999822 34567888899999986555 433 99999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
+|++|+.||||.+||+.+++.+++++++++++ |+|||++|||+. +...|||++.+.+ |+
T Consensus 160 ~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 160 NPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKD-GK 219 (226)
T ss_pred CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeC-Ce
Confidence 99999999999999999999999999999875 999999999975 6789999999996 77
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=306.31 Aligned_cols=192 Identities=22% Similarity=0.306 Sum_probs=169.1
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARIL 95 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~i 95 (531)
..|+++||+++|+. ..+|+++|+.+.+| |||||||||+|+|+.+. .+|+|.++|.+.+. ...+|.+
T Consensus 2 ~~i~l~~v~K~yg~--~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~--~~G~I~i~g~~vt~l~P~~R~i 77 (338)
T COG3839 2 AELELKNVRKSFGS--FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP--TSGEILIDGRDVTDLPPEKRGI 77 (338)
T ss_pred cEEEEeeeEEEcCC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCChhHCCE
Confidence 35788889888862 11888888777665 99999999999998663 47999999998765 3456889
Q ss_pred EEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEE
Q 042733 96 GYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISR 159 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllL 159 (531)
|+|+|+..+||++||+|| +++..++++++.+.+++++..++++ ||||||++||||+.+|++++|
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 999999999999999998 3566788999999999999999877 999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 160 DEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 160 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
|||+|+||...+..+...|+++.++ |.|+|.+|||.. |+..++||+++|++ |++.-.|+|.+
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~-G~i~Q~g~p~e 220 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMND-GRIQQVGTPLE 220 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeC-CeeeecCChHH
Confidence 9999999999999999999999876 999999999975 67889999999995 99999999853
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=309.32 Aligned_cols=192 Identities=24% Similarity=0.339 Sum_probs=171.8
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARIL 95 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~i 95 (531)
..++++||+++|+ +..+++|+|+.+.+| |||||||||+|+|...+ .+|+|.++|.++.. ...+|.+
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p--~~G~I~l~G~~i~~lpp~kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEILLDGEDITDVPPEKRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCChhhccc
Confidence 4679999999996 678999999888877 99999999999998653 46899999998754 3457889
Q ss_pred EEEecCCCCCCCCcHHhH------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 96 GYCEQNDIHSPHDTLYDF------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
|+|+|+..+||++||.|| .++.++++++.++.++|++.+++.+ ||||||++||||+.+|++|+
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLL 159 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLL 159 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhh
Confidence 999999999999999999 1345678999999999999998887 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
||||.|+||..-+.++...++++.++ |.|.|++|||.. |...++|||++|++ |++.-.|+|++
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gtP~e 223 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGTPEE 223 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCCHHH
Confidence 99999999999999999999999875 999999999976 67889999999996 99999999864
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=306.23 Aligned_cols=191 Identities=21% Similarity=0.279 Sum_probs=162.5
Q ss_pred EEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hh
Q 042733 28 ISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~ 90 (531)
|+++|++++|+.+ ...+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHHHHH
Confidence 6788888888532 236888888887777 99999999999998653 47999999986532 12
Q ss_pred hcceEEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
.++.+||++|+..+++..||.|+. ....+++.+.++.+|+.+..++.+ ||||||+|||||+.+|
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P 159 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 159 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999872 123456788899999988877766 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|+|||||++||+.++..++++|++++++ |.|||++||+++ .+.+.||++++|++ |+++..|+++
T Consensus 160 ~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv~~g~~~ 226 (343)
T TIGR02314 160 KVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQGTVS 226 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999999875 999999999987 57788999999986 9999999863
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=305.33 Aligned_cols=192 Identities=26% Similarity=0.307 Sum_probs=165.6
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFAR 93 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~ 93 (531)
...|+++||+++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++
T Consensus 39 ~~~i~i~nl~k~y~--~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~~~~~~~~~~~ 114 (340)
T PRK13536 39 TVAIDLAGVSKSYG--DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVPVPARARLARA 114 (340)
T ss_pred ceeEEEEEEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEECCcchHHHhc
Confidence 45699999999995 457999999888776 99999999999998653 47999999987532 34567
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
.+||++|+..+++.+|+.|+.. .....++++++.+++.+..++.+ |||||++||+||+++|++|
T Consensus 115 ~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lL 194 (340)
T PRK13536 115 RIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLL 194 (340)
T ss_pred cEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 8999999999999999999721 12234667889999987777665 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+++
T Consensus 195 iLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~~~ 257 (340)
T PRK13536 195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGRPH 257 (340)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999878999999999987 67889999999996 9999999863
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=290.40 Aligned_cols=190 Identities=22% Similarity=0.320 Sum_probs=166.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc----hhhhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK----QETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~----~~~~~~ 93 (531)
.+++++++|+|+.. ..+|+++|+.+.+| |||||||+++|+|...+ .+|.|.++|.+.. ...+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~~~~~~~~~~~ 79 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTSSEKSLLELRQ 79 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeeccchhhHHHhhc
Confidence 46899999999754 68999999888877 99999999999997653 4589999998754 345788
Q ss_pred eEEEEecCCC-CCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDI-HSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~-~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.+|||+|++. .+...||.+. .++...+++++++.+++.+.+++.+ ||||||+||.+|+.+|++
T Consensus 80 ~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~i 159 (235)
T COG1122 80 KVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEI 159 (235)
T ss_pred ceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCE
Confidence 9999999974 4566788775 3456788999999999998887776 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|||||+|||+.+++++++.+++++++ |+|+|++|||.+ .+...+|++++|++ |+++++|++
T Consensus 160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~~g~p 223 (235)
T COG1122 160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILADGDP 223 (235)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEeecCCH
Confidence 9999999999999999999999999987 799999999987 57888999999996 999999986
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=305.08 Aligned_cols=191 Identities=21% Similarity=0.273 Sum_probs=162.0
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILG 96 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~ig 96 (531)
.|+++|++++|+ +.+.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+|
T Consensus 3 ~l~i~~l~~~~~-~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYD-GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVVNELEPADRDIA 79 (356)
T ss_pred EEEEEeEEEEeC-CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEE
Confidence 367788888773 1345777777777666 99999999999998653 57999999986532 22357899
Q ss_pred EEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
||+|++.++|++||+|+. .....+++++++.+++.+..++.+ ||||||+|||||+.+|++|+||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD 159 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD 159 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999982 122356788999999998887776 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||++||+.++..+.+.|+++.++ |.|+|++|||++ ++..++|++++|++ |+++..|+++
T Consensus 160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~~~ 220 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGTPV 220 (356)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECCHH
Confidence 999999999999999999999875 999999999987 68889999999986 9999999874
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=292.23 Aligned_cols=190 Identities=28% Similarity=0.403 Sum_probs=160.3
Q ss_pred EEEEeEEEEEeCCCccccccEEEEE---------cCCCchHHHHHHHHhCCCCCceEEEEEEEcCc---ccch-hhhcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAF---------RPGGAGKTTLMDVLAGRKPGGYITRNITVSGY---PEKQ-ETFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i---------~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~---~~~~-~~~~~~ 94 (531)
|.++++++.++ ...+++||++.+ ||+|||||||||+|+|+..+ ..|.|.+||. +... ....|+
T Consensus 3 i~i~~~~~~~~--~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 3 IRINNVKKRFG--AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred eeehhhhhhcc--cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcc
Confidence 45555555553 344555555555 55599999999999998663 4789999998 4333 234578
Q ss_pred EEEEecCCCCCCCCcHHhH-------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 95 LGYCEQNDIHSPHDTLYDF-------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~-------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
||||+|+..+|+++||.++ ....+.++++.|+.+.|++..++.+ ||||||++||||+.+|++
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~v 158 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKV 158 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCe
Confidence 9999999999999999998 2356678999999999999988876 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
|+||||+++||..-+.++.+-|+++.++ |.|++++|||+. ++++.+|||++|++ |+|...|++++
T Consensus 159 LLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~e 224 (345)
T COG1118 159 LLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPDE 224 (345)
T ss_pred EeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHHH
Confidence 9999999999999999999999999876 999999999987 78999999999996 99999999853
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=304.57 Aligned_cols=190 Identities=24% Similarity=0.320 Sum_probs=163.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILG 96 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~ig 96 (531)
.|+++|++++|+ .+.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+|
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~~~~~~~~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFG--AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIYQGGRDITRLPPQKRDYG 79 (353)
T ss_pred EEEEEEEEEEeC--CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEE
Confidence 477888888885 345788888777666 99999999999998653 57999999986532 22457799
Q ss_pred EEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|++|+..++|++||+|+. .....+++++++.+++.+..++.+ ||||||+|||||+.+|++++||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLD 159 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLD 159 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999999999982 123457889999999998888776 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||++||+.++.++.+.|+++.++ |.|+|++|||++ ++..++|++++|++ |+++..|+++
T Consensus 160 EP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~~~ 220 (353)
T TIGR03265 160 EPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGTPQ 220 (353)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999875 999999999987 68889999999996 9999999874
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=288.41 Aligned_cols=188 Identities=22% Similarity=0.287 Sum_probs=157.0
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhhc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETFA 92 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~~ 92 (531)
|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..++
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~ 76 (235)
T cd03261 1 IELRGLTKSFG--GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDISGLSEAELYRLR 76 (235)
T ss_pred CeEEEEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccChhhHHHHh
Confidence 36788888884 346888888777766 99999999999998653 46899999976432 2356
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCC
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ 155 (531)
+.++|++|++.+++.+|+.|+.. .....+++.++.+++.+..++.+ ||||||+||+||+.+|+
T Consensus 77 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ 156 (235)
T cd03261 77 RRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPE 156 (235)
T ss_pred cceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 77999999999999999998721 11234677889999987666654 99999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 156 IISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 157 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 221 (235)
T cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTP 221 (235)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEEecCH
Confidence 99999999999999999999999999874 899999999987 57778999999986 999998875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=284.17 Aligned_cols=184 Identities=21% Similarity=0.287 Sum_probs=153.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhhc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETFA 92 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~~ 92 (531)
++++|++++|+...+.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehhhcChhHHHHHH
Confidence 6788999988532346889988888777 99999999999998653 46999999976432 1245
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
+.++|++|++.+++.+|+.|+.. .....+++.++.+++.+..++.+ |||||++||+||+.+|++
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL 159 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 67999999999899999998721 12345778899999987766655 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
|+|||||+|||+.++..+.+.|++++++|.|||++||+++ .+...||++++|++ |++
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i 216 (216)
T TIGR00960 160 LLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GRL 216 (216)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CcC
Confidence 9999999999999999999999999877999999999987 56778999999986 764
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=302.21 Aligned_cols=190 Identities=23% Similarity=0.348 Sum_probs=162.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILG 96 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~ig 96 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+|
T Consensus 6 ~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFG--SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred EEEEEeEEEEEC--CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEE
Confidence 467888888874 345778887777766 99999999999998663 47999999987543 22357899
Q ss_pred EEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|++|+..++|++||.|+. .+..+++++.++.+++.+..++.+ ||||||+|||||+.+|++|+||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLD 161 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFD 161 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 999999999999999982 123457788999999998877766 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||+|||+.++.++.+.|+++.++ |+|+|++|||++ ++.+++|++++|++ |+++..|+++
T Consensus 162 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~~~ 222 (351)
T PRK11432 162 EPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGSPQ 222 (351)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999875 999999999987 67889999999996 9999999874
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=279.17 Aligned_cols=192 Identities=24% Similarity=0.342 Sum_probs=162.5
Q ss_pred EEEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhh
Q 042733 27 YISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETF 91 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~ 91 (531)
.++++|+++.|+.+. ..+|++||+.+.+| |||||||.|+|+|..++ .+|+|.++|.+... ..+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCcccCccccchhh
Confidence 579999999997432 14999999999988 99999999999998764 47999999976533 245
Q ss_pred cceEEEEecCCC--CCCCCcHHhHH---------HHHHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhCC
Q 042733 92 ARILGYCEQNDI--HSPHDTLYDFT---------HCLYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 92 ~~~igyv~Q~~~--~~~~ltv~e~~---------~~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
++.+.+|+||+. +.|..||++.. ....+++.++++.+||.+ +.++.+ |||||++|||||+.+|
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P 160 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP 160 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence 678999999974 67889998862 123344889999999975 445544 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|+||||||+||+..+.+++++|.+++++ +.|.|++|||.+ -+...|||+++|++ |+++..++.+
T Consensus 161 klLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ivE~~~~~ 227 (252)
T COG1124 161 KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQIVEIGPTE 227 (252)
T ss_pred CEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-CeEEEeechh
Confidence 999999999999999999999999999875 889999999987 47889999999996 9999999864
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=302.47 Aligned_cols=190 Identities=23% Similarity=0.280 Sum_probs=164.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEE--EEEEEcCcccch-hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYIT--RNITVSGYPEKQ-ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~--G~i~~~g~~~~~-~~~~~~ 94 (531)
.|+++|++++|+ .+.+|+|+|+.+.+| |||||||||+|+|..++ .+ |+|.++|.+... ...++.
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 5 GIRIDHLRVAYG--ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred EEEEEEEEEEEC--CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCEECCCCCHHHCC
Confidence 478899999985 356889888888766 99999999999998653 45 999999986532 223567
Q ss_pred EEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
+||++|+..++|++||+|+. .....+++++++.++|++..++.+ ||||||+|||||+.+|++|+
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llL 160 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLL 160 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999982 123456888999999998888776 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc--CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDM--GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||||+|||+.++.++.+.|+++.++ |.|+|++|||++ ++..++|++++|++ |+++..|+++
T Consensus 161 LDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~~g~~~ 224 (362)
T TIGR03258 161 LDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAAHGEPQ 224 (362)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999999876 799999999987 67889999999986 9999999874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=281.15 Aligned_cols=186 Identities=25% Similarity=0.356 Sum_probs=154.1
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igy 97 (531)
++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.++|
T Consensus 1 l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYG--SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVTGVPPERRNIGM 76 (213)
T ss_pred CeeeeeEEEeC--CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcCcCchhhccEEE
Confidence 36778888885 356888888777776 99999999999997653 46899999976532 223567999
Q ss_pred EecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
++|++.+++.+|++|+.. .....+++.++.+++.+..++.+ |||||++||++|+.+|++++|||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE 156 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999998888899998721 11235677899999987666654 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 162 PISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 157 PLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999864 899999999986 56788999999986 8988765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=295.36 Aligned_cols=190 Identities=26% Similarity=0.311 Sum_probs=160.9
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcce
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARI 94 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ 94 (531)
..++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.
T Consensus 3 ~~i~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~ 78 (303)
T TIGR01288 3 VAIDLVGVSKSYG--DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPVPSRARLARVA 78 (303)
T ss_pred cEEEEEeEEEEeC--CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcccHHHHhhc
Confidence 3578899998885 356888888888776 99999999999997653 46999999976432 234678
Q ss_pred EEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
+||++|++.+++.+|++|+.. .....++++++.+++.+..++.+ |||||++||+||+.+|++|+
T Consensus 79 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 79 IGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred EEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999998721 11234567888999987766665 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 219 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGRP 219 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999999999878999999999987 57788999999986 999999986
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=280.09 Aligned_cols=188 Identities=22% Similarity=0.319 Sum_probs=157.3
Q ss_pred EEEEeEEEEEeCCCc--cccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcce
Q 042733 28 ISLNEIVYSVDMPQI--GDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~--~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ 94 (531)
++++|++++|+...+ ++|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++.
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcccCHHHHHhh
Confidence 578899988853211 6888888888877 99999999999998653 46899999976532 235678
Q ss_pred EEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
++|++|++.+++.+|++|+.. .....+++.++.+++.+..++.+ |||||++||+||+.+|++|+
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ill 159 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLL 159 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999998889899998721 12345678899999987766655 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++...+|++++|++ |+++..|
T Consensus 160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 160 LDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 99999999999999999999999877999999999986 57788999999986 8987654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=280.58 Aligned_cols=188 Identities=24% Similarity=0.283 Sum_probs=157.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ig 96 (531)
|+++|++++|+ .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.++
T Consensus 1 i~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYG--DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVVREPREVRRRIG 76 (220)
T ss_pred CEEEEEEEEEC--CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecCcChHHHhhcEE
Confidence 36788888885 356888888777776 99999999999998653 47899999976431 23456799
Q ss_pred EEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|++|++.+++.+|++++.. .....+++.++.+++.+..++.+ |||||++||+|++.+|++++||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllD 156 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD 156 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999998889999988721 12345678899999987666655 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 157 EPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 999999999999999999999876 899999999987 57778999999986 999988865
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=297.73 Aligned_cols=191 Identities=23% Similarity=0.294 Sum_probs=160.4
Q ss_pred EEEEeEEEEEeC--CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hh
Q 042733 28 ISLNEIVYSVDM--PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~--~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~ 90 (531)
|+++|++++|+. .++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHH
Confidence 678888888852 1346888888877777 99999999999998653 47999999986532 12
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
.++.+||++|++.+++.+||.|+.. ....++++.++.+|+.+..++.+ ||||||+|||||+++|
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p 159 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP 159 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 3577999999999999999999721 12345778899999987766655 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|+++
T Consensus 160 ~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~~~g~~~ 226 (343)
T PRK11153 160 KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLVEQGTVS 226 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999999865 899999999987 57788999999986 9999998763
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=279.03 Aligned_cols=186 Identities=24% Similarity=0.314 Sum_probs=156.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igy 97 (531)
|+++|++++|+ ++++|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.++|
T Consensus 1 l~~~~l~~~~~--~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYG--KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQKNIEALRRIGA 76 (208)
T ss_pred CEEEEEEEEEC--CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCcccchHHHHhhEEE
Confidence 36788888884 356888888887776 99999999999998653 47999999986532 234567999
Q ss_pred EecCCCCCCCCcHHhHHHH-------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 042733 98 CEQNDIHSPHDTLYDFTHC-------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISG 165 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~-------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsg 165 (531)
++|++.+++..|+.|+... ....+++.++.+++.+..++.+ ||||||+||++|+.+|++++|||||+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 9999988999999997321 1345778889999987766655 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 166 LDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 166 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|++++|++ |++++.|
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999999878899999999987 46678999999986 8988764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=299.79 Aligned_cols=191 Identities=22% Similarity=0.292 Sum_probs=165.2
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARIL 95 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~i 95 (531)
..|+++|++++|+ ++.+|+++|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+
T Consensus 13 ~~L~l~~l~~~~~--~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFD--GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred ceEEEEEEEEEEC--CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHCCE
Confidence 4589999999995 456899999888777 99999999999998653 47999999987532 2235679
Q ss_pred EEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEE
Q 042733 96 GYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISR 159 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllL 159 (531)
||++|+..++|++||.|+.. ....++++.++.+++.+..++.+ ||||||+|||||+.+|++|+|
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLL 168 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLL 168 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999821 12346788899999998888776 999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 160 DEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 160 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||||+|||+.++..+.+.|+++.++ |.|+|++|||+. ++..++|++++|++ |+++..|+++
T Consensus 169 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~~~ 230 (375)
T PRK09452 169 DESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGTPR 230 (375)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999875 999999999987 67889999999996 9999999864
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=298.48 Aligned_cols=190 Identities=24% Similarity=0.336 Sum_probs=161.8
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILG 96 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~ig 96 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+|
T Consensus 2 ~L~i~~l~~~~~--~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~~~~~~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFG--RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDVSRLHARDRKVG 77 (353)
T ss_pred EEEEEEEEEEeC--CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHCCEE
Confidence 367888888885 356888888777766 99999999999998653 46999999986532 22356799
Q ss_pred EEecCCCCCCCCcHHhHHH---------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 97 YCEQNDIHSPHDTLYDFTH---------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
|++|++.++|++||.|+.. ...+++++.++.+++.+..++.+ ||||||+|||||+.+|++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~l 157 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI 157 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999998821 12346778899999988877766 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+|||||+|||+.++..+.+.|++++++ |.|+|++||+++ ++..+||++++|++ |+++..|+++
T Consensus 158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~~~ 222 (353)
T PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGTPD 222 (353)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999999876 899999999987 67889999999996 9999999864
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=277.28 Aligned_cols=185 Identities=22% Similarity=0.340 Sum_probs=154.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
++++|+++.|+ ++.+++++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..++.++|+
T Consensus 1 l~~~~l~~~~~--~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~-~~~~~i~~~ 75 (210)
T cd03269 1 LEVENVTKRFG--RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLDI-AARNRIGYL 75 (210)
T ss_pred CEEEEEEEEEC--CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchhH-HHHccEEEe
Confidence 35778888774 346788888777776 99999999999998653 47999999987543 345679999
Q ss_pred ecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 99 EQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
+|++.+++.+|++|+.. ...+.+++.++.+++.+..++.+ |||||++||++|+.+|++++||||
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP 155 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEP 155 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999888999998721 12345677889999987666654 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 163 ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 156 ~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 156 FSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999999999999877899999999987 46778999999986 8987654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=264.93 Aligned_cols=173 Identities=24% Similarity=0.314 Sum_probs=154.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEEEecCCCCCCCCcHHhH-----------
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGYCEQNDIHSPHDTLYDF----------- 113 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv~Q~~~~~~~ltv~e~----------- 113 (531)
.++.-.+||+|||||||||+|+|...+ .+|+|++||.+... ....|-+++++|+.++|.++||.++
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL 102 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKL 102 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccccc
Confidence 366788899999999999999997653 47999999987643 3456778999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCe
Q 042733 114 THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRT 187 (531)
Q Consensus 114 ~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~t 187 (531)
..+.+++++.++..+|+..+.++.. ||||||++||+|+.+-+||+||||+|.|||.-+.+++.++.+++++ +.|
T Consensus 103 ~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~T 182 (231)
T COG3840 103 NAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMT 182 (231)
T ss_pred CHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCE
Confidence 3556778999999999999988877 8999999999999999999999999999999999999999999864 899
Q ss_pred EEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 188 VVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 188 vi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++++||+|+ ++....|+++++++ ||+.+.|+.+
T Consensus 183 llmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~~ 215 (231)
T COG3840 183 LLMVTHHPE-DAARIADRVVFLDN-GRIAAQGSTQ 215 (231)
T ss_pred EEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccHH
Confidence 999999998 68899999999996 9999999853
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=301.97 Aligned_cols=191 Identities=24% Similarity=0.328 Sum_probs=162.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.|+++||+++|+ ++.+|+++|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.
T Consensus 3 ~L~~~nls~~y~--~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i~~~~~~~~~~~ 78 (402)
T PRK09536 3 MIDVSDLSVEFG--DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDVEALSARAASRR 78 (402)
T ss_pred eEEEeeEEEEEC--CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEcCcCCHHHHhcc
Confidence 467788888874 356788887776666 99999999999997653 46999999976532 345678
Q ss_pred EEEEecCCCCCCCCcHHhHH---------------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 95 LGYCEQNDIHSPHDTLYDFT---------------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~---------------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
+||++|+..+++.+||+|+. ....+++++.++.+++.+..++.+ |||||++|||||+++|
T Consensus 79 ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P 158 (402)
T PRK09536 79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQAT 158 (402)
T ss_pred eEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999999998999999872 122356788999999988777765 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
++|+|||||+|||+.++.+++++|++++++|+|||+++|+++ ++.+.|||+++|++ |+++..|++++
T Consensus 159 ~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~G~~~e 225 (402)
T PRK09536 159 PVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAAGPPAD 225 (402)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCHHH
Confidence 999999999999999999999999999877999999999987 57789999999996 99999998753
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=277.35 Aligned_cols=186 Identities=23% Similarity=0.341 Sum_probs=154.6
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igy 97 (531)
++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++.++|
T Consensus 1 i~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~~~~~~~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFG--NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVTDLPPKDRDIAM 76 (213)
T ss_pred CEEEeeEEEEC--CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCCcccceEEE
Confidence 36788888885 346888888887777 99999999999998653 46899999976532 123457999
Q ss_pred EecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
++|++.+++..|++|+.. ...+.+++.++.+++.+..++.+ |||||++||++|+.+|++++|||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE 156 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999998888899998721 12345677889999987766654 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 162 PISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
||+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 157 PLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999999999999874 899999999986 57778999999986 9998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=299.04 Aligned_cols=192 Identities=21% Similarity=0.315 Sum_probs=165.6
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcce
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARI 94 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~ 94 (531)
...|+++|++++|+ ++.+|+++|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.
T Consensus 17 ~~~l~l~~v~~~~~--~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~~~~~~~r~ 92 (377)
T PRK11607 17 TPLLEIRNLTKSFD--GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDLSHVPPYQRP 92 (377)
T ss_pred CceEEEEeEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHCC
Confidence 44689999999995 356899999888877 99999999999998653 47999999986532 234678
Q ss_pred EEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
+||++|+..++|++||.|+. .+..+++++.++.+++.+..++.+ ||||||+|||||+.+|++|+
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999982 122456788899999998877765 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||||+|||+.++..+.+.|+++.++ |.|+|++|||++ ++..++|++++|++ |+++..|+++
T Consensus 173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~~~ 235 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGEPE 235 (377)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcCHH
Confidence 99999999999999999999998764 899999999987 67889999999996 9999999864
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=281.26 Aligned_cols=189 Identities=21% Similarity=0.271 Sum_probs=157.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~~ 94 (531)
++++|++++|+ .+.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .. .++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~ 76 (232)
T cd03218 1 LRAENLSKRYG--KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITKLPMHKRARLG 76 (232)
T ss_pred CeEEEEEEEeC--CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccCCHhHHHhcc
Confidence 36788888885 356888888877776 99999999999998653 46899999976432 12 2456
Q ss_pred EEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
++|++|++.+++.+|++|+.. .....+++.++.+++.+..++.+ |||||++||++|+.+|++|+
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 156 (232)
T cd03218 77 IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLL 156 (232)
T ss_pred EEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999998721 12235677889999987666655 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+.+
T Consensus 157 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 218 (232)
T cd03218 157 LDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGTPE 218 (232)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeCHH
Confidence 99999999999999999999999877999999999987 57889999999986 9999888753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=278.57 Aligned_cols=189 Identities=24% Similarity=0.330 Sum_probs=155.0
Q ss_pred EEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 28 ISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
++++|++++|+... +.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. ..++.++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~--~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVT--GPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECc--cccCcEE
Confidence 35778888775211 45788888777766 99999999999998653 4689999997653 2456799
Q ss_pred EEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|++|++.+++.+|++|+.. .....+++.++.+++.+..++.+ |||||++||+||+.+|++++||
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD 156 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 9999998888899998721 12345778899999987666554 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEcc-CceeeecCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQ-VGQEISVGPL 221 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~-~G~~v~~G~~ 221 (531)
|||+|||+.++..+.+.|+++++ .|+|||++||+++ ++...||++++|++ +|+++..++.
T Consensus 157 EPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 157 EPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999999999999999865 4899999999987 46788999999983 3999888765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=291.17 Aligned_cols=189 Identities=22% Similarity=0.361 Sum_probs=160.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARIL 95 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~i 95 (531)
.++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.+
T Consensus 2 ~l~~~~l~~~~~--~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~~~~~~~~~~~i 77 (301)
T TIGR03522 2 SIRVSSLTKLYG--TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDVLQNPKEVQRNI 77 (301)
T ss_pred EEEEEEEEEEEC--CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccChHHHHhce
Confidence 367888888884 456888888777766 99999999999998653 47999999976532 2356789
Q ss_pred EEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEE
Q 042733 96 GYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISR 159 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllL 159 (531)
||++|++.+++.+|+.|+.. ....++++.++.+|+.+..++.+ |||||++||+||+++|++|+|
T Consensus 78 g~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliL 157 (301)
T TIGR03522 78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLIL 157 (301)
T ss_pred EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999821 11345788899999988777766 999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 160 DEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 160 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||||+|||+.+++.+++.|+++++ ++|||++||+++ ++.+.||++++|++ |++++.|+++
T Consensus 158 DEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~~ 217 (301)
T TIGR03522 158 DEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKLD 217 (301)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999865 799999999987 68889999999996 9999999863
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=298.50 Aligned_cols=190 Identities=21% Similarity=0.282 Sum_probs=159.1
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILG 96 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~ig 96 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+|
T Consensus 3 ~l~i~~l~~~~~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYG--DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRMNDVPPAERGVG 78 (369)
T ss_pred EEEEEEEEEEeC--CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCCCCHhHCCEE
Confidence 367777777774 345777777776665 99999999999998653 46999999976532 12346799
Q ss_pred EEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|++|+..+++.+||+|+.. ....++++.++.+++.+..++.+ ||||||+|||||+.+|++|+||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD 158 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999999821 22346788899999988777665 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||+|||+.+++.+.+.|+++.++ |.|+|++||+++ ++...||++++|++ |+++..|+++
T Consensus 159 EPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~~~ 219 (369)
T PRK11000 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 219 (369)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999875 899999999987 57889999999996 9999999864
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=278.20 Aligned_cols=189 Identities=21% Similarity=0.348 Sum_probs=156.6
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ig 96 (531)
|+++|+++.|+...+++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++.++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIRTDRKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccchHHHhhhEE
Confidence 3678888888532256888888877777 99999999999998653 47899999976532 23456799
Q ss_pred EEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|++|++.+++..|++++.. .....+++.++.+++.+..++.+ |||||++||++|+.+|++++||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 158 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD 158 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 9999998888999998721 11245677889999987666654 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||+|||+.+++.+.+.|+++++ ++|||++||+++ .+.+.||++++|++ |+++..|++
T Consensus 159 EP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 159 EPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999876 599999999987 46678999999986 999998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=277.68 Aligned_cols=183 Identities=25% Similarity=0.331 Sum_probs=149.0
Q ss_pred EEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchh------h
Q 042733 28 ISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQE------T 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~------~ 90 (531)
|+++|++++|+..+ +.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehhhcchhHHHH
Confidence 35778888875321 46788888777766 99999999999998653 479999999765321 1
Q ss_pred -hcceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhC
Q 042733 91 -FARILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVAN 153 (531)
Q Consensus 91 -~~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~ 153 (531)
.++.++|++|++.+++.+|++|+.. .....+++.++.+|+.+..++.+ |||||++||++|+.+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 158 (218)
T cd03255 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAND 158 (218)
T ss_pred HHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccC
Confidence 2457999999999999999998721 12345778899999987666654 999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++. +. .||++++|++ |++
T Consensus 159 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~-G~i 218 (218)
T cd03255 159 PKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRD-GKI 218 (218)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeC-CcC
Confidence 999999999999999999999999999987 58999999999873 44 8999999986 763
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=282.63 Aligned_cols=190 Identities=21% Similarity=0.233 Sum_probs=156.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhhc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETFA 92 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~~ 92 (531)
++++|++++|+ .++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..++
T Consensus 2 l~~~~l~~~~~-~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR02315 2 LEVENLSKVYP-NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDITKLRGKKLRKLR 78 (243)
T ss_pred eEEEeeeeecC-CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhhhCCHHHHHHHH
Confidence 57788888874 1346888888777766 99999999999998653 47999999976432 1246
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-------------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHH
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-------------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAV 148 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-------------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~ 148 (531)
+.++|++|++.+++.+|++|+.. ....++.+.++.+++.+..++.+ ||||||+||+
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 79 RRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIAR 158 (243)
T ss_pred hheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 67999999998888899988731 12235677889999987666554 9999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.||++++|++ |+++..|+++
T Consensus 159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 231 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA-GEIVFDGAPS 231 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecCCHH
Confidence 999999999999999999999999999999999764 899999999987 46788999999986 9999988764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=280.02 Aligned_cols=189 Identities=24% Similarity=0.331 Sum_probs=157.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchh-hhcceEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQE-TFARILG 96 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~-~~~~~ig 96 (531)
.++++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.... ..++.++
T Consensus 2 ~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~ 77 (239)
T cd03296 2 SIEVRNVSKRFG--DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDATDVPVQERNVG 77 (239)
T ss_pred EEEEEeEEEEEC--CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCCccccceE
Confidence 468888888885 356888888877766 99999999999998653 479999999765321 2245799
Q ss_pred EEecCCCCCCCCcHHhHHHH---------------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 97 YCEQNDIHSPHDTLYDFTHC---------------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~~---------------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
|++|++.+++.+|+.|+... ....+++.++.+++.+..++.+ |||||++||+||+.+|++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 157 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKV 157 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999988888999987210 1234567789999987666654 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|||||+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 221 (239)
T cd03296 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGTP 221 (239)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCH
Confidence 9999999999999999999999999875 899999999986 46788999999986 999998875
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=278.89 Aligned_cols=187 Identities=21% Similarity=0.245 Sum_probs=153.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCC-----CCceEEEEEEEcCcccch-----
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRK-----PGGYITRNITVSGYPEKQ----- 88 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~-----~~g~~~G~i~~~g~~~~~----- 88 (531)
|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|.. + ..+|+|.++|.+...
T Consensus 1 i~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~~~~~~~~~ 76 (227)
T cd03260 1 IELRDLNVYYG--DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKDIYDLDVDV 76 (227)
T ss_pred CEEEEEEEEcC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEEhhhcchHH
Confidence 36778888874 346788888777777 999999999999976 4 357999999976432
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhhhcc-------HHHHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFRQAL-------FEQRKRLTVAVE 149 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~~~~-------~GerqRv~iA~a 149 (531)
..+++.++|++|++.++ .+||+|+.. ....++++.++.+++.+..+.. .|||||++||++
T Consensus 77 ~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a 155 (227)
T cd03260 77 LELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARA 155 (227)
T ss_pred HHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHH
Confidence 23466799999998877 789998721 1234567788999997654332 399999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ++.+.||++++|++ |+++..|+++
T Consensus 156 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 225 (227)
T cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GRLVEFGPTE 225 (227)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEecCcc
Confidence 99999999999999999999999999999999877 99999999987 56778999999986 9999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=281.29 Aligned_cols=189 Identities=22% Similarity=0.264 Sum_probs=155.4
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhhcc
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETFAR 93 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~~~ 93 (531)
+++|++++|+. ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 2 ~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 2 EVENLSKTYPN-GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred EEeeEEEecCC-ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccccCHhHHHHHHh
Confidence 57788887752 145788888777766 99999999999998653 46899999976432 23456
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-------------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHH
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-------------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVE 149 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-------------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~a 149 (531)
.++|++|++.+++.+|++|+.. .....+.+.++.+++.+..++.+ ||||||+||++
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 158 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARA 158 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHH
Confidence 7999999998888899988731 11234667788999987666554 99999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...||++++|++ |+++..|+++
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 230 (241)
T cd03256 159 LMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPPA 230 (241)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCHH
Confidence 99999999999999999999999999999999864 899999999987 57778999999986 9999988753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=279.78 Aligned_cols=188 Identities=19% Similarity=0.229 Sum_probs=158.3
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-----hhhcc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-----ETFAR 93 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-----~~~~~ 93 (531)
++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 2 l~~~~l~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 77 (240)
T PRK09493 2 IEFKNVSKHFG--PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI--TSGDLIVDGLKVNDPKVDERLIRQ 77 (240)
T ss_pred EEEEeEEEEEC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCChhHHHHhh
Confidence 57888888885 356888888888777 99999999999998653 47999999976432 23466
Q ss_pred eEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.++|++|++.+++.+|+.++.. .....+.+.++.+|+.+..++.+ |||||++||++|+.+|++
T Consensus 78 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 157 (240)
T PRK09493 78 EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL 157 (240)
T ss_pred ceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 7999999998888899988721 11234677889999987666654 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (240)
T PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAEDGDP 220 (240)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeCCH
Confidence 9999999999999999999999999877999999999987 46778999999986 999998875
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=276.49 Aligned_cols=182 Identities=25% Similarity=0.336 Sum_probs=146.8
Q ss_pred EEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEec
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQ 100 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q 100 (531)
++|++++|+.. +.+|+++|+.+.+| |||||||||+|+|..++ .+|+|.++|.+......++.++|++|
T Consensus 2 ~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~i~~~~q 78 (205)
T cd03226 2 IENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAKERRKSIGYVMQ 78 (205)
T ss_pred cccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhHHhhcceEEEec
Confidence 45666666421 45677777666655 99999999999998653 47999999987543445667999999
Q ss_pred CCC-CCCCCcHHhHHHH-------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 042733 101 NDI-HSPHDTLYDFTHC-------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLD 167 (531)
Q Consensus 101 ~~~-~~~~ltv~e~~~~-------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD 167 (531)
++. .++..|+.|+... ....+++.++.+++.+..++.+ |||||++|||+|+.+|++++|||||+|||
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 964 3446799987321 1235778899999987766654 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee
Q 042733 168 ARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI 216 (531)
Q Consensus 168 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v 216 (531)
+.+++.+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999878999999999987 46778999999986 8864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=279.66 Aligned_cols=188 Identities=23% Similarity=0.297 Sum_probs=156.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~~ 94 (531)
++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .. .++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 76 (236)
T cd03219 1 LEVRGLTKRFG--GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDITGLPPHEIARLG 76 (236)
T ss_pred CeeeeeEEEEC--CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECCCCCHHHHHhcC
Confidence 35778888885 346888888777766 99999999999998653 46899999976532 12 2456
Q ss_pred EEEEecCCCCCCCCcHHhHHH---------------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHH
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH---------------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAV 148 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~---------------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~ 148 (531)
++|++|++.+++.+|++|+.. .....+++.++.+++.+..++.+ ||||||+||+
T Consensus 77 i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 77 IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred EEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHH
Confidence 999999999999999998721 11235677889999987666655 9999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-GRVIAEGTP 227 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEeecCH
Confidence 999999999999999999999999999999999878999999999987 57788999999986 999988875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=266.60 Aligned_cols=191 Identities=20% Similarity=0.280 Sum_probs=157.8
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCC---CCceEEEEEEEcCcccc-----h
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRK---PGGYITRNITVSGYPEK-----Q 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~---~~g~~~G~i~~~g~~~~-----~ 88 (531)
..++++||++.|+ ++.+|+|||+.+.+| |||||||||++.... ++..++|+|.++|.++. .
T Consensus 6 ~~~~~~~l~~yYg--~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYG--DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEEC--chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 4578999999996 678898888766554 999999999999853 44578999999998653 2
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCch-hhhcc--------HHHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNP-FRQAL--------FEQRKRLTVAV 148 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~-~~~~~--------~GerqRv~iA~ 148 (531)
..+|+++|+|+|.++.|| ++++|+ .+...+.++..|+...|-+ ..|++ .|||||++|||
T Consensus 84 ~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIAR 162 (253)
T COG1117 84 VELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHH
Confidence 457899999999999999 999998 1233455666776665532 22222 29999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+.+|+||+||||||+|||.+..+|-+++.+|+ +.-|||++||.+. ...+..|+..++.. |+++.+|+.+
T Consensus 163 alAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G~LvE~g~T~ 233 (253)
T COG1117 163 ALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-GELVEFGPTD 233 (253)
T ss_pred HHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-cEEEEEcCHH
Confidence 9999999999999999999999999999999997 4689999999987 46788999999996 9999999864
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=278.85 Aligned_cols=190 Identities=22% Similarity=0.303 Sum_probs=156.7
Q ss_pred EEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hh
Q 042733 28 ISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~ 90 (531)
|+++|++++|+.. .+++|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcccCCHHHHHH
Confidence 5778888887521 126888888777766 99999999999998653 46899999986532 12
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
.++.++|++|++.+++.+|+.|+.. .....+++.++.+++.+..++.+ |||||++||++|+.+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (233)
T cd03258 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP 159 (233)
T ss_pred HHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 3567999999999999999998721 11235677899999987666654 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 225 (233)
T cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVVEEGTV 225 (233)
T ss_pred CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999999999875 899999999986 57788999999986 999988874
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=276.31 Aligned_cols=190 Identities=20% Similarity=0.291 Sum_probs=154.7
Q ss_pred EEEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h---
Q 042733 27 YISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E--- 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~--- 89 (531)
.++++|+++.|+.+. +.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCCHHHHH
Confidence 478888888885322 35888888877776 99999999999998653 47999999976532 1
Q ss_pred hh-cceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh
Q 042733 90 TF-ARILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA 152 (531)
Q Consensus 90 ~~-~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~ 152 (531)
.. ++.++|++|++.+++.+|++|+.. ....++++.++.+|+.+..++.+ |||||++||++|+.
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~ 162 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN 162 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 12 256999999998888899998721 12345778899999987666554 99999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++. +. .+|++++|++ |+++..|+.
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~-~~~~~~~l~~-G~i~~~~~~ 229 (233)
T PRK11629 163 NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AK-RMSRQLEMRD-GRLTAELSL 229 (233)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HH-hhCEEEEEEC-CEEEEEecc
Confidence 9999999999999999999999999999976 58999999999873 44 4689999986 999988764
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=285.90 Aligned_cols=191 Identities=18% Similarity=0.278 Sum_probs=156.9
Q ss_pred EEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-----hh
Q 042733 28 ISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-----ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-----~~ 90 (531)
|+++||+++|+... +.+|+|||+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEECCCcCccHHH
Confidence 68888888885321 36888888888777 99999999999998653 47899999977532 24
Q ss_pred hcceEEEEecCCC-CCCCCcHHhHH-----------HHHHHHHHHHHHhcCCc--hhhhccH-----HHHHHHHHHHHHh
Q 042733 91 FARILGYCEQNDI-HSPHDTLYDFT-----------HCLYMFIEEGMELVELN--PFRQALF-----EQRKRLTVAVEFV 151 (531)
Q Consensus 91 ~~~~igyv~Q~~~-~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~--~~~~~~~-----GerqRv~iA~aL~ 151 (531)
.++.+||++|++. .+...||+|+. .+...+++++++.+|+. +..++.+ |||||++||+||+
T Consensus 81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 5678999999863 33457998872 12234578889999996 5556554 9999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
.+|++|+|||||+|||+.++.++++.|++++++ |+|||++||+++ ++...||++++|++ |++++.|+++
T Consensus 161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~i~~~g~~~ 230 (287)
T PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GKCELQGTPR 230 (287)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999999875 999999999986 56778999999986 9999999763
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=273.82 Aligned_cols=183 Identities=22% Similarity=0.331 Sum_probs=151.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhhc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETFA 92 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~~ 92 (531)
++++|+++.|+. .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...+
T Consensus 1 l~~~~l~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~ 77 (214)
T cd03292 1 IEFINVTKTYPN-GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSDLRGRAIPYLR 77 (214)
T ss_pred CEEEEEEEEeCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcccCCHHHHHHHH
Confidence 367888888852 246888888887777 99999999999998653 46899999976431 1345
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
+.++|++|++.+++.+|++|+.. ...+.+++.++.+++.+..++.+ |||||++||++|+.+|++
T Consensus 78 ~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (214)
T cd03292 78 RKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI 157 (214)
T ss_pred HheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCE
Confidence 67999999999999999998721 12235677889999987766654 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|++ |++
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~~ 214 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GKL 214 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CcC
Confidence 9999999999999999999999999777999999999986 46678999999985 763
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=279.72 Aligned_cols=189 Identities=24% Similarity=0.282 Sum_probs=156.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---------
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--------- 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--------- 88 (531)
.++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 78 (250)
T PRK11264 3 AIEVKNLVKKFH--GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITIDTARSLSQQKG 78 (250)
T ss_pred cEEEeceEEEEC--CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccccccchhh
Confidence 367888888884 346788888777766 99999999999998653 46899998875421
Q ss_pred --hhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHH
Q 042733 89 --ETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVE 149 (531)
Q Consensus 89 --~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~a 149 (531)
...++.++|++|++.+++..|+.|+.. .....+.+.++.+|+.+..++.+ |||||++||++
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~a 158 (250)
T PRK11264 79 LIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARA 158 (250)
T ss_pred HHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHH
Confidence 234567999999998888899998731 11234677888899987666554 99999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 228 (250)
T PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ-GRIVEQGPA 228 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999877999999999987 57788999999986 999998875
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=274.05 Aligned_cols=182 Identities=22% Similarity=0.341 Sum_probs=150.7
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhhc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETFA 92 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~~ 92 (531)
++++|++++|+ +++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..++
T Consensus 2 l~~~~l~~~~~-~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 2 IEFHNVSKAYP-GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred EEEEeeeEEeC-CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcccCCHHHHHHHH
Confidence 57888888884 2346888888777776 99999999999998653 47899999976532 1245
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
+.++|++|++.+++..|+.|+.. .....+++.++.+++.+..++.+ |||||++||++|+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 158 (214)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL 158 (214)
T ss_pred hheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 67999999998888999998721 12345678889999987655544 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|++ |+
T Consensus 159 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~ 214 (214)
T TIGR02673 159 LLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDD-GR 214 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecC-CC
Confidence 9999999999999999999999999877999999999987 57778999999985 64
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=286.83 Aligned_cols=192 Identities=22% Similarity=0.260 Sum_probs=157.8
Q ss_pred EEEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-------
Q 042733 27 YISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK------- 87 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~------- 87 (531)
.|+++|++++|+... ..+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~~~~~~~~ 79 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEKNKKKTKE 79 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceeccccccccc
Confidence 378999999996322 25899999888877 99999999999998653 3588888875421
Q ss_pred --------------------hhhhcceEEEEecCC-CCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCc-hhh
Q 042733 88 --------------------QETFARILGYCEQND-IHSPHDTLYDFT-----------HCLYMFIEEGMELVELN-PFR 134 (531)
Q Consensus 88 --------------------~~~~~~~igyv~Q~~-~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~-~~~ 134 (531)
....++.+||++|++ ..+...||+|+. .....++++.++.+|+. +..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~ 159 (305)
T PRK13651 80 KEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL 159 (305)
T ss_pred ccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh
Confidence 123567899999985 344567998872 12345678899999996 566
Q ss_pred hccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 135 QALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 135 ~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
++.+ ||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.|||+++|
T Consensus 160 ~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~adrv~vl 238 (305)
T PRK13651 160 QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFF 238 (305)
T ss_pred hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HHHHhCCEEEEE
Confidence 6655 9999999999999999999999999999999999999999999877999999999986 477889999999
Q ss_pred ccCceeeecCCCC
Q 042733 210 KQVGQEISVGPLG 222 (531)
Q Consensus 210 ~~~G~~v~~G~~~ 222 (531)
++ |++++.|+++
T Consensus 239 ~~-G~i~~~g~~~ 250 (305)
T PRK13651 239 KD-GKIIKDGDTY 250 (305)
T ss_pred EC-CEEEEECCHH
Confidence 86 9999999864
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=272.96 Aligned_cols=188 Identities=22% Similarity=0.336 Sum_probs=159.2
Q ss_pred EEEEeEEEEEeCCCccccccEE---------EEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLS---------GAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs---------~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
+++++|+++++ ++.+++|+| |.+|||||||||++|+|.|..++ .+|+|.++|.+.+. ..+.+|||+
T Consensus 3 L~ie~vtK~Fg--~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~~~-~~~~rIGyL 77 (300)
T COG4152 3 LEIEGVTKSFG--DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPLSQ-EIKNRIGYL 77 (300)
T ss_pred eEEecchhccC--ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcchhh-hhhhhcccC
Confidence 34555555553 344555555 55555599999999999998763 57999999998764 345679999
Q ss_pred ecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 99 EQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
|++..++|.+||.|. ..+.+...+..|+.+++......++ |++|++.+-.+++++|++++||||
T Consensus 78 PEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEP 157 (300)
T COG4152 78 PEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEP 157 (300)
T ss_pred hhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCC
Confidence 999999999999986 3455677889999999987776666 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 163 ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||.+.+.+.+.+.+++++|.|||+++|.++ .+.++||++++|++ |+.|..|+..
T Consensus 158 FSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~ 215 (300)
T COG4152 158 FSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVE 215 (300)
T ss_pred ccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHH
Confidence 9999999999999999999999999999999987 58899999999996 9999999863
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=289.96 Aligned_cols=183 Identities=24% Similarity=0.322 Sum_probs=156.4
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEEEEecCCCCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILGYCEQNDIHSP 106 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~igyv~Q~~~~~~ 106 (531)
.++|+|+++.. ..+.+.+||||||||||+|+|+|..++ .+|+|.++|.+... ...++.+||++|++.+++
T Consensus 8 ~l~~vs~~i~~------Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 8 AVDGVNFKVRE------GEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred EEeeeeEEEcC------CcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence 57788887753 256788889999999999999998653 47999999976532 235667999999999999
Q ss_pred CCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 042733 107 HDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARA 170 (531)
Q Consensus 107 ~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~ 170 (531)
.+|++|+.. ....++++.++.+++.+..++.+ ||||||+||+||+++|++|+|||||+|||+.+
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 159 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 999998721 12345778899999987777765 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 171 ATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 171 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++.+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 160 ~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 160 RRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999878999999999987 67789999999986 999999985
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=285.99 Aligned_cols=191 Identities=20% Similarity=0.231 Sum_probs=157.7
Q ss_pred EEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-------h
Q 042733 28 ISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-------Q 88 (531)
Q Consensus 28 l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-------~ 88 (531)
++++|++++|+..+ .++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. .
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~ 80 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVITAGKKNKKL 80 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECccccccchH
Confidence 78999999996322 46999999888877 99999999999998653 4699999998652 1
Q ss_pred hhhcceEEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVEF 150 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~aL 150 (531)
...++.+||++|++. .+...||.|+.. ....+++++++.++|. +..++.+ ||||||+||++|
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 81 KPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 235667999999862 233579988721 1234678889999996 5555554 999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+.+|++|+|||||+|||+.++..+.++|++++++ |.|||++||+++ ++.+.|||+++|++ |++++.|+++
T Consensus 161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G~i~~~g~~~ 231 (290)
T PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-GTVFLQGTPR 231 (290)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999865 999999999987 57788999999986 9999999753
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=285.07 Aligned_cols=191 Identities=24% Similarity=0.319 Sum_probs=157.0
Q ss_pred EEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-------h
Q 042733 28 ISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-------Q 88 (531)
Q Consensus 28 l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-------~ 88 (531)
|+++|++++|+... +.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. .
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECccccccccH
Confidence 68999999996322 25899999988877 99999999999998653 4689999998652 1
Q ss_pred hhhcceEEEEecCCC-CCCCCcHHhHH-----------HHHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDI-HSPHDTLYDFT-----------HCLYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVEF 150 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~-~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~aL 150 (531)
...++.+||++|++. .+...||.++. .....++.+.++.+++. +..++.+ |||||++||++|
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 235678999999862 33346998872 12234577888999995 4555544 999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+++
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G~i~~~g~~~ 229 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-GHIISCGTPS 229 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999877999999999986 56788999999996 9999999864
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=277.67 Aligned_cols=189 Identities=21% Similarity=0.276 Sum_probs=159.0
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---------h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---------Q 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---------~ 88 (531)
.++++|+++.|+ .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. .
T Consensus 2 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 77 (242)
T PRK11124 2 SIQLNGINCFYG--AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred EEEEEeeEEEEC--CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecccccccchhhH
Confidence 468889998885 356899999888777 99999999999998653 4689999997541 1
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHh
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFV 151 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~ 151 (531)
...++.++|++|++.+++.+|+.|+.. .....+.+.++.+|+.+..++.+ |||||++|||+|+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 157 (242)
T PRK11124 78 RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 234567999999999999999998732 11234677888999987666655 9999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||+++ ++.+.+|++++|.+ |++++.|++
T Consensus 158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 225 (242)
T PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-GHIVEQGDA 225 (242)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999877999999999987 46678999999986 999998875
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=274.34 Aligned_cols=191 Identities=30% Similarity=0.476 Sum_probs=158.1
Q ss_pred EEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCC-ceEEEEEEEcCcccchhhhcceE
Q 042733 28 ISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG-GYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~-g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
+.++|+++.++.. .+++|+|+|+.+.+| |||||||+|+|+|..+. ...+|++.++|.+......++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i 83 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCV 83 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccE
Confidence 5788999999644 267999999888877 99999999999997641 12579999999876544567789
Q ss_pred EEEecCCCCCCCCcHHhHHHH--------------HHHHHHH-HHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTHC--------------LYMFIEE-GMELVELNPFRQALF-----EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~--------------~~~~~~~-~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ 155 (531)
+|++|++.+++.+|++|+... ....+++ .++.+++.+..++.+ |||||++||++|+.+|+
T Consensus 84 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 163 (226)
T cd03234 84 AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPK 163 (226)
T ss_pred EEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCC
Confidence 999999999999999987210 0112344 678888876655443 99999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 156 IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
+++|||||+|||+.++..+.+.|++++++|.|+|+++|++..++.+.||++++|++ |++++.|
T Consensus 164 illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 164 VLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999877999999999985468889999999996 9998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=272.46 Aligned_cols=184 Identities=27% Similarity=0.400 Sum_probs=150.5
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC--------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEEEE
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG--------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILGYC 98 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g--------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~igyv 98 (531)
+++|+++.|+ ++.+++|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.++|+
T Consensus 2 ~~~~~~~~~~--~~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~ 77 (211)
T cd03264 2 QLENLTKRYG--KKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLKQPQKLRRRIGYL 77 (211)
T ss_pred EEEEEEEEEC--CEEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCccccchHHHHhheEEe
Confidence 5677777774 245777777666554 99999999999997653 46899999976532 2346779999
Q ss_pred ecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 99 EQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
+|++.+++.+|+.|+.. .....+++.++.+++.+..++.+ |||||++||++|+.+|++++||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 157 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999999999998721 11345677889999987666655 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 163 ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+|++++|++ |+++..|
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 158 TAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred cccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999976 589999999987 46678999999986 8988764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=277.73 Aligned_cols=188 Identities=24% Similarity=0.336 Sum_probs=155.5
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEE
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILG 96 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ig 96 (531)
+++|++++|+.. +.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.++
T Consensus 2 ~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 2 EFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred EEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcCcCChHHhhcceE
Confidence 577888887521 45788888777766 99999999999998653 46899999976432 23456799
Q ss_pred EEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCch--hhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 97 YCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNP--FRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~--~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
|++|++.+++.+|++|+.. .....+.+.++.+++.+ ..++.+ ||||||+||++|+.+|++++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 158 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL 158 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998721 12345678889999985 555554 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|++ |++++.|++
T Consensus 159 lDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 220 (242)
T cd03295 159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTP 220 (242)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999875 899999999986 56788999999986 999988875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=282.06 Aligned_cols=190 Identities=24% Similarity=0.318 Sum_probs=157.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++|+++.|+. .+.+|+|+|+.+.+| |||||||+++|+|..++ .+|+|.++|.+... ...++.
T Consensus 4 ~l~~~~l~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~ 80 (274)
T PRK13647 4 IIEVEDLHFRYKD-GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREVNAENEKWVRSK 80 (274)
T ss_pred eEEEEEEEEEeCC-CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEECCCCCHHHHHhh
Confidence 4678888888842 245888888887777 99999999999997653 46999999976532 234567
Q ss_pred EEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 95 LGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 95 igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
+||++|++. .++..||.|+.. .....+++.++.+++.+..++.+ |||||++||+||+.+|++|
T Consensus 81 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 160 (274)
T PRK13647 81 VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160 (274)
T ss_pred EEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999863 455679988721 12345678889999987766665 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||||+|||+.++.++.+.|++++++|.|||++||+++ .+.+.||++++|++ |++++.|++
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 222 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAEGDK 222 (274)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999877999999999987 46678999999986 999999985
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=280.26 Aligned_cols=188 Identities=19% Similarity=0.192 Sum_probs=152.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-----------
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK----------- 87 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~----------- 87 (531)
++++||++.|+ ++.+|+|+|+.+.+| |||||||+++|+|..++ .+|++.++|.+..
T Consensus 6 l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 6 LNVIDLHKRYG--EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred EEEeeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEccccccccccccc
Confidence 56666666664 245666666666655 99999999999998653 4689999997542
Q ss_pred -----hhhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhh-hccH-----HHHHHH
Q 042733 88 -----QETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFR-QALF-----EQRKRL 144 (531)
Q Consensus 88 -----~~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~-~~~~-----GerqRv 144 (531)
...+++.++|++|++.+++.+|++|+.. ....++.+.++.+|+.+.. ++.+ |||||+
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv 161 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRV 161 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence 1234678999999999998899998832 1234567789999997653 4433 999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||||+.+|++++|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++...||++++|++ |++++.|++
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 162 SIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGAP 236 (257)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999999999999877999999999987 56778999999986 999998875
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=278.85 Aligned_cols=188 Identities=20% Similarity=0.215 Sum_probs=159.9
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..|+++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. ..++.++
T Consensus 11 ~~l~i~~l~~~~~--~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~--~~~~~i~ 84 (257)
T PRK11247 11 TPLLLNAVSKRYG--ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPLA--EAREDTR 84 (257)
T ss_pred CcEEEEEEEEEEC--CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEHH--HhhCceE
Confidence 3589999999995 357999999888877 99999999999998653 4689999886542 3567799
Q ss_pred EEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 042733 97 YCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGL 166 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgL 166 (531)
|++|++.+++..|++|+.. .....+.+.++.+++.+..++.+ |||||++||++|+.+|++++|||||+||
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~L 164 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGAL 164 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 9999998888899999832 12345778899999987666655 9999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 167 DARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 167 D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+.++..+.+.|+++++ .|+|||++||+++ .+...||++++|++ |++++.|+.
T Consensus 165 D~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 165 DALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999865 4899999999987 46778999999986 999988764
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=281.84 Aligned_cols=190 Identities=17% Similarity=0.249 Sum_probs=156.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETF 91 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~ 91 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...
T Consensus 7 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 7 LVDMRGVSFTRG--NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred eEEEeCeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEccccChhhHHHH
Confidence 467888888774 346788888777766 99999999999998653 46899999976431 123
Q ss_pred cceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 92 ARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
++.++|++|+..+++.+|+.|+... ....+.+.++.+++.+..++.+ |||||++||++|+.+|
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p 162 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEP 162 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 5679999999988898999987211 1234566789999987666655 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|+|||||+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|+++
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 229 (269)
T PRK11831 163 DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKIVAHGSAQ 229 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999765 899999999976 57788999999986 9999998753
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=272.53 Aligned_cols=182 Identities=21% Similarity=0.255 Sum_probs=151.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-----hhhhcc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-----QETFAR 93 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-----~~~~~~ 93 (531)
++++|++++|+ ++.+|+++|+.+.|| |||||||+|+|+|..++ .+|++.++|.+.. ....++
T Consensus 1 l~~~~l~~~~~--~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 76 (213)
T cd03262 1 IEIKNLHKSFG--DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLTDDKKNINELRQ 76 (213)
T ss_pred CEEEEEEEEEC--CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccchhHHHHHh
Confidence 36788888885 356888888887766 99999999999998653 4689999997642 123467
Q ss_pred eEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.++|++|++.+++.+|+.|+.. ...+.+++.++.+++.+..++.+ |||||++||++|+.+|++
T Consensus 77 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 156 (213)
T cd03262 77 KVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV 156 (213)
T ss_pred cceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCE
Confidence 8999999999888899998721 12235677888899987666654 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
++|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++
T Consensus 157 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~i 213 (213)
T cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GRI 213 (213)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CcC
Confidence 9999999999999999999999999877899999999987 57788999999986 763
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=276.08 Aligned_cols=190 Identities=18% Similarity=0.229 Sum_probs=154.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h-hhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E-TFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~-~~~~ 93 (531)
.++++|++++|+ .+.+|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... . ..++
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~ 80 (237)
T PRK11614 5 MLSFDKVSAHYG--KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDITDWQTAKIMRE 80 (237)
T ss_pred EEEEEeEEEeeC--CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEecCCCCHHHHHHh
Confidence 477888888874 356888888877776 99999999999998653 46899999976432 1 2456
Q ss_pred eEEEEecCCCCCCCCcHHhHHH---------HHHHHHHHHHHhc-CCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH---------CLYMFIEEGMELV-ELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~---------~~~~~~~~~l~~l-~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
.++|++|+..+++..|+.++.. .....+++.++.+ ++.+..+..+ |||||++||++|+.+|++++
T Consensus 81 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ill 160 (237)
T PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160 (237)
T ss_pred CEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 7999999998888899988721 1122345556666 4554444443 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+++
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 222 (237)
T PRK11614 161 LDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVLEDTGD 222 (237)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEeeCCHH
Confidence 99999999999999999999999878999999999986 57889999999996 9999999863
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=282.23 Aligned_cols=192 Identities=20% Similarity=0.330 Sum_probs=158.4
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-----hhhh
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-----QETF 91 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-----~~~~ 91 (531)
..|+++|++++|+ +++.+|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+.. ...+
T Consensus 4 ~~l~~~~l~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~ 80 (283)
T PRK13636 4 YILKVEELNYNYS-DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPIDYSRKGLMKL 80 (283)
T ss_pred ceEEEEeEEEEeC-CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEECCCCcchHHHH
Confidence 3578888888884 2345888888877776 99999999999998653 4799999998652 1245
Q ss_pred cceEEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 92 ARILGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 92 ~~~igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
++.+||++|++. .+...|++|+.. .....++++++.+++.+..++.+ |||||++||+||+.+|
T Consensus 81 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p 160 (283)
T PRK13636 81 RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 160 (283)
T ss_pred HhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 678999999863 334679988721 12345788899999987776665 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...||++++|++ |++++.|+++
T Consensus 161 ~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i~~~g~~~ 227 (283)
T PRK13636 161 KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRVILQGNPK 227 (283)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999875 899999999987 46678999999986 9999999864
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=273.19 Aligned_cols=189 Identities=20% Similarity=0.270 Sum_probs=157.3
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
++++|++++|+ ++.+|+++|+.+.+| |||||||+++|+|..++ .+|++.++|.+..... ++.++|+
T Consensus 1 l~l~~v~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~~~~~~~-~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFG--KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP--TSGEIIFDGHPWTRKD-LHKIGSL 75 (223)
T ss_pred CEEEeEEEEEC--CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEeccccc-cccEEEE
Confidence 35778888774 346788888777766 99999999999998653 4789999997654322 2569999
Q ss_pred ecCCCCCCCCcHHhHHHH-------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 042733 99 EQNDIHSPHDTLYDFTHC-------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGL 166 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~~-------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgL 166 (531)
+|++.+++..|++|+... ....+.+.++.+++.+..++.+ |||||++||++++.+|++++|||||+||
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~L 155 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGL 155 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCC
Confidence 999988888999987321 1235678889999987766654 9999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 167 DARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 167 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
|+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|++.+
T Consensus 156 D~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 210 (223)
T TIGR03740 156 DPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKINK 210 (223)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChhh
Confidence 999999999999999877999999999987 57788999999986 99999998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=282.98 Aligned_cols=190 Identities=19% Similarity=0.286 Sum_probs=156.8
Q ss_pred EEEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------
Q 042733 27 YISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------ 88 (531)
.++++||+++|+.+. +.+|+|+|+.+.+| |||||||+|+|+|..++ ..|+|.++|.+...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i~~~~~~~~ 79 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITITHKTKDKY 79 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECccccccch
Confidence 378999999996322 36999999888887 99999999999998653 46899999976521
Q ss_pred -hhhcceEEEEecCC--CCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHH
Q 042733 89 -ETFARILGYCEQND--IHSPHDTLYDFT-----------HCLYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAV 148 (531)
Q Consensus 89 -~~~~~~igyv~Q~~--~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~ 148 (531)
...++.+||++|++ .+++ .|+.|+. .....++++.++.+|+. +..++.+ |||||++||+
T Consensus 80 ~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 80 IRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred HHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 23567899999985 3443 5888872 12234577889999996 5555544 9999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 159 aL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~-G~i~~~g~~ 230 (286)
T PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE-GSIVSQTSP 230 (286)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999986 4999999999987 57788999999986 999999985
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=273.72 Aligned_cols=188 Identities=21% Similarity=0.280 Sum_probs=151.1
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~~ 94 (531)
|+++|++++|+ .+++|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .. .++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 76 (222)
T cd03224 1 LEVENLNAGYG--KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDITGLPPHERARAG 76 (222)
T ss_pred CEEeeEEeecC--CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCCCCHHHHHhcC
Confidence 35677777774 345777777777666 99999999999998653 46899999976432 11 3457
Q ss_pred EEEEecCCCCCCCCcHHhHHH---------HHHHHHHHHHHhc-CCchhhhccH-----HHHHHHHHHHHHhhCCCeEEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH---------CLYMFIEEGMELV-ELNPFRQALF-----EQRKRLTVAVEFVANPSIISR 159 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~---------~~~~~~~~~l~~l-~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllL 159 (531)
++|++|++.+++.+|++|+.. .....+++.++.+ ++.+..++.+ |||||++|||+|+.+|++|+|
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 156 (222)
T cd03224 77 IGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL 156 (222)
T ss_pred eEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999998721 1123355667776 4655555544 999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 160 DEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 160 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (222)
T cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTA 216 (222)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCH
Confidence 9999999999999999999999877899999999986 57788999999986 999988864
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=276.05 Aligned_cols=190 Identities=23% Similarity=0.299 Sum_probs=156.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~ 93 (531)
.++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 78 (241)
T PRK10895 3 TLTAKNLAKAYK--GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDISLLPLHARARR 78 (241)
T ss_pred eEEEeCcEEEeC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHHHHh
Confidence 467778877774 346777777777766 99999999999998653 46899999976432 12356
Q ss_pred eEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.++|++|++.+++.+|+.|+.. .....+++.++.+++.+..+..+ |||||++||++|+.+|++
T Consensus 79 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (241)
T PRK10895 79 GIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKF 158 (241)
T ss_pred CeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 7999999998888899988721 12245677889999877655544 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+|||||+|||+.++..+.+.+++++++|+|||++||+++ ++.+.||++++|++ |+++..|+++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 222 (241)
T PRK10895 159 ILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHGTPT 222 (241)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeCCHH
Confidence 9999999999999999999999999877999999999986 57788999999986 9999988753
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=286.15 Aligned_cols=193 Identities=19% Similarity=0.253 Sum_probs=159.2
Q ss_pred ceEEEEEeEEEEEeCC---CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----
Q 042733 25 PHYISLNEIVYSVDMP---QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~---~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---- 88 (531)
...|+++|++++|+.. .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEEccccccc
Confidence 3568999999999632 136999999999988 99999999999998653 46899999865321
Q ss_pred ---------------hhhcceEEEEecCC--CCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCc-hhhhccH-
Q 042733 89 ---------------ETFARILGYCEQND--IHSPHDTLYDFT-----------HCLYMFIEEGMELVELN-PFRQALF- 138 (531)
Q Consensus 89 ---------------~~~~~~igyv~Q~~--~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~-~~~~~~~- 138 (531)
...++.+||++|++ .+++ .|++|+. .....++++.++.+++. +..++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 23567899999986 3444 5998862 11234677889999996 4555543
Q ss_pred ----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 139 ----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 139 ----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~adri~vl~~-G~ 253 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDK-GK 253 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999877999999999986 46788999999996 99
Q ss_pred eeecCCCC
Q 042733 215 EISVGPLG 222 (531)
Q Consensus 215 ~v~~G~~~ 222 (531)
++..|+++
T Consensus 254 i~~~g~~~ 261 (320)
T PRK13631 254 ILKTGTPY 261 (320)
T ss_pred EEEeCCHH
Confidence 99999863
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=271.71 Aligned_cols=184 Identities=22% Similarity=0.284 Sum_probs=151.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhhc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETFA 92 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~~ 92 (531)
++++|+++.|+ +++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..++
T Consensus 2 l~~~~l~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~ 78 (222)
T PRK10908 2 IRFEHVSKAYL-GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDITRLKNREVPFLR 78 (222)
T ss_pred EEEEeeEEEec-CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCChhHHHHHH
Confidence 57888888884 2356888888887777 99999999999998653 47999999976431 1245
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
+.++|++|++.+++..|+.|+.. .....+++.++.+++.+..++.+ |||||++||+||+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (222)
T PRK10908 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV 158 (222)
T ss_pred hheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 78999999998888899988721 11234667889999877666554 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI 216 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v 216 (531)
|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ ++...||++++|++ |+++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 159 LLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 9999999999999999999999999877899999999987 46778999999986 8864
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=281.64 Aligned_cols=192 Identities=20% Similarity=0.266 Sum_probs=156.8
Q ss_pred EEEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------
Q 042733 27 YISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------ 88 (531)
.++++|+++.|+.+. +.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHITPETGNKN 79 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECccccccch
Confidence 467889998885221 45888888888777 99999999999998653 47999999976421
Q ss_pred -hhhcceEEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHH
Q 042733 89 -ETFARILGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVE 149 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~a 149 (531)
...++.+||++|++. .+..+|+.|+.. ....++++.++.+++. +..++.+ |||||++||++
T Consensus 80 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~lara 159 (287)
T PRK13641 80 LKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGV 159 (287)
T ss_pred HHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHH
Confidence 234567999999863 333579988721 1234577889999996 5655554 99999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++..|+++
T Consensus 160 l~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 230 (287)
T PRK13641 160 MAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GKLIKHASPK 230 (287)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999999999877999999999987 57789999999986 9999999753
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=276.31 Aligned_cols=187 Identities=24% Similarity=0.330 Sum_probs=155.1
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
++++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .++.++|+
T Consensus 2 l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~--~~~~~~~v 75 (255)
T PRK11248 2 LQISHLYADYG--GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVEG--PGAERGVV 75 (255)
T ss_pred EEEEEEEEEeC--CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCC--CCCcEEEE
Confidence 57888888885 356888888877776 99999999999998653 46899999976532 23458999
Q ss_pred ecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 99 EQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
+|++.+++..|+.|+.. .....+.+.++.+++.+..++.+ |||||++||++|+.+|++|+||||
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEP 155 (255)
T PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEP 155 (255)
T ss_pred eCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99998888899988721 12345778899999987666554 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEcc-CceeeecCCC
Q 042733 163 ISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQ-VGQEISVGPL 221 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~-~G~~v~~G~~ 221 (531)
|+|||+.++..+.+.|+++++ +|+|||++||+++ ++...||++++|++ +|+++..++.
T Consensus 156 t~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 156 FGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999865 5899999999987 57788999999973 4899887764
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=281.39 Aligned_cols=191 Identities=23% Similarity=0.283 Sum_probs=159.0
Q ss_pred EEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 27 YISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
.++++|++++|+.. .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLLTEENVWDIRH 81 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECCcCcHHHHHh
Confidence 47889999988532 245889999888877 99999999999998653 46899999986532 23567
Q ss_pred eEEEEecCC-CCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQND-IHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~-~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.+||++|++ ..++..||+|+.. ...++++++++.+++.+..++.+ |||||++||+||+.+|++
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 161 (279)
T PRK13650 82 KIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI 161 (279)
T ss_pred hceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 899999997 3677789998721 12345788899999987766665 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..||++++|++ |+++..|+++
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~~g~~~ 225 (279)
T PRK13650 162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVESTSTPR 225 (279)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999875 999999999987 35 57999999986 9999999863
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=271.82 Aligned_cols=188 Identities=19% Similarity=0.236 Sum_probs=149.9
Q ss_pred EEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hh
Q 042733 28 ISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~ 90 (531)
++++|++++|+... ..+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~ 79 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIFDGKDLLKLSRRLRKI 79 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEccccchhhHHH
Confidence 57888888885321 26888888887776 99999999999998653 46899999976532 23
Q ss_pred hcceEEEEecCC--CCCCCCcHHhHHH------------HHHHH-HHHHHHhcCCc-hhhhccH-----HHHHHHHHHHH
Q 042733 91 FARILGYCEQND--IHSPHDTLYDFTH------------CLYMF-IEEGMELVELN-PFRQALF-----EQRKRLTVAVE 149 (531)
Q Consensus 91 ~~~~igyv~Q~~--~~~~~ltv~e~~~------------~~~~~-~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~a 149 (531)
+++.++|++|++ .+++.+|++++.. ..... .++.++.+++. +..++.+ |||||++|||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 159 (228)
T cd03257 80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA 159 (228)
T ss_pred hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence 466899999998 4667899988721 00111 24677888884 4555443 99999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 228 (228)
T cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-GKIVEEG 228 (228)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999876 899999999987 56678999999986 8987654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=270.43 Aligned_cols=181 Identities=24% Similarity=0.356 Sum_probs=143.4
Q ss_pred EEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEEE
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGY 97 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~igy 97 (531)
++|++++|+...+.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++.++|
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccCCHHHHHhhceE
Confidence 45666666421145667766666655 99999999999997653 46899999976432 235677999
Q ss_pred EecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 98 CEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 98 v~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
++|++. .++..|+.|+.. .....+++.++.+++.+..++.+ |||||++|||||+.+|++++||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 159 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD 159 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999974 366789988721 12235677889999976655544 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 161 EPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|++ |+
T Consensus 160 EPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~ 211 (211)
T cd03225 160 EPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLED-GK 211 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CC
Confidence 999999999999999999999877999999999986 56778999999986 64
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=276.57 Aligned_cols=190 Identities=22% Similarity=0.304 Sum_probs=158.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++.
T Consensus 2 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~ 77 (255)
T PRK11231 2 TLRTENLTVGYG--TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQLARR 77 (255)
T ss_pred EEEEEeEEEEEC--CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEhHHCCHHHHhhh
Confidence 467888888885 356888888877777 99999999999997653 46899999976432 234567
Q ss_pred EEEEecCCCCCCCCcHHhHHHH---------------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHC---------------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~---------------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
++|++|+..+++.+|+.|+... ....+++.++.+++.+..++.+ |||||++||+|++.+|
T Consensus 78 i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 157 (255)
T PRK11231 78 LALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDT 157 (255)
T ss_pred eEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999888888899887221 1235677888899987666655 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+.+
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 223 (255)
T PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQGTPE 223 (255)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEcCHH
Confidence 999999999999999999999999999877999999999987 57789999999986 9999988764
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=274.49 Aligned_cols=188 Identities=21% Similarity=0.250 Sum_probs=153.7
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc---eEEEEEEEcCcccch-----hh
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG---YITRNITVSGYPEKQ-----ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g---~~~G~i~~~g~~~~~-----~~ 90 (531)
++++|++++|+ +..+++|+|+.+.+| |||||||+|+|+|..++. ..+|+|.++|.+... ..
T Consensus 2 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYG--EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEEC--CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 57888888885 346888888877777 999999999999976431 127999999986532 23
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc----hhhhccH-----HHHHHHHHHHH
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELN----PFRQALF-----EQRKRLTVAVE 149 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~----~~~~~~~-----GerqRv~iA~a 149 (531)
.++.++|++|++.+++ .|+.|+.. .....++++++.+++. +..++.+ |||||++|||+
T Consensus 80 ~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 158 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARA 158 (247)
T ss_pred HHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHH
Confidence 4678999999988888 99998721 1123466788889987 5444443 99999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (247)
T TIGR00972 159 LAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD-GELVEYGPT 227 (247)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999999977 489999999987 57788999999996 999998875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=275.11 Aligned_cols=188 Identities=20% Similarity=0.244 Sum_probs=157.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----------
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---------- 88 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---------- 88 (531)
++++||++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+...
T Consensus 1 i~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~ 76 (252)
T TIGR03005 1 VRFSDVTKRFG--ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLYHMPGRNGPLVP 76 (252)
T ss_pred CEEEEEEEEeC--CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccccc
Confidence 36889998885 356889999888776 99999999999997653 46899999875421
Q ss_pred ------hhhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCchhhhccH-----HHHHHHH
Q 042733 89 ------ETFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELNPFRQALF-----EQRKRLT 145 (531)
Q Consensus 89 ------~~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~ 145 (531)
...++.++|++|++.+++..|+.|+... ....+++.++.+++.+..++.+ |||||++
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 77 ADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVA 156 (252)
T ss_pred cchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHH
Confidence 1346779999999999999999887321 1234677889999987666554 9999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|++||+++ ++...+|++++|++ |+++..|+.
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK-GRIVEQGKP 231 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999875 899999999987 56788999999986 999988875
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=270.05 Aligned_cols=184 Identities=20% Similarity=0.245 Sum_probs=149.3
Q ss_pred EEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h---h
Q 042733 28 ISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E---T 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~---~ 90 (531)
++++|++++|+.+. +++|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... . .
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhhhcCHhHHHH
Confidence 57788888885321 35888888877776 99999999999998653 46899999976432 1 1
Q ss_pred hc-ceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhC
Q 042733 91 FA-RILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVAN 153 (531)
Q Consensus 91 ~~-~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~ 153 (531)
++ +.++|++|++.+++..|++|+.. .....+.+.++.+++.+..++.+ |||||++||++|+.+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 159 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQ 159 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 22 57999999998888899998721 11235677889999987666654 999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceee
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI 216 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v 216 (531)
|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ +.+|++++|++ |+++
T Consensus 160 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i~ 220 (221)
T TIGR02211 160 PSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQLF 220 (221)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEec
Confidence 9999999999999999999999999999864 899999999987 34 45799999986 8875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=276.46 Aligned_cols=190 Identities=19% Similarity=0.201 Sum_probs=156.1
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~ 93 (531)
.++++|+++.|+ ++++|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .. .+.
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 5 LLSVSGLMMRFG--GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred eEEEeeEEEEEC--CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEECCCCCHHHHHhc
Confidence 467888888774 346788888777766 99999999999998653 47999999976532 12 234
Q ss_pred eEEEEecCCCCCCCCcHHhHHHH--------------------------HHHHHHHHHHhcCCchhhhccH-----HHHH
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTHC--------------------------LYMFIEEGMELVELNPFRQALF-----EQRK 142 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~~--------------------------~~~~~~~~l~~l~l~~~~~~~~-----Gerq 142 (531)
.++|++|++.+++.+|+.|+... ....+++.++.+|+.+..++.+ ||||
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHH
Confidence 58999999999999999986210 1134566788899877666655 9999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 143 RLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 143 Rv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 238 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQ-GTPLANGTP 238 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEecCCH
Confidence 999999999999999999999999999999999999999875 899999999987 57788999999986 999998875
Q ss_pred C
Q 042733 222 G 222 (531)
Q Consensus 222 ~ 222 (531)
+
T Consensus 239 ~ 239 (255)
T PRK11300 239 E 239 (255)
T ss_pred H
Confidence 3
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=278.91 Aligned_cols=191 Identities=24% Similarity=0.275 Sum_probs=155.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++||++.|+...+.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECCcCcHHHHhhh
Confidence 36777777777532345777777776666 99999999999998653 47999999986532 234567
Q ss_pred EEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 95 LGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 95 igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
+||++|++. .++..|+.|+.. ....+++++++.+|+.+..++.+ |||||++||++|+.+|++|
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 162 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII 162 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999973 667789998721 12345788889999988777665 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||+|||+.++..+++.|++++++ |+|||++||+++. +. .||++++|++ |++++.|+++
T Consensus 163 lLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~-G~i~~~g~~~ 225 (279)
T PRK13635 163 ILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNK-GEILEEGTPE 225 (279)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999876 8999999999873 54 5999999986 9999999753
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=278.94 Aligned_cols=189 Identities=20% Similarity=0.276 Sum_probs=156.8
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~~ 94 (531)
++++|++++|+. ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.
T Consensus 2 l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~ 78 (274)
T PRK13644 2 IRLENVSYSYPD-GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTGDFSKLQGIRKL 78 (274)
T ss_pred EEEEEEEEEcCC-CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEECCccccHHHHHhh
Confidence 578888888842 345888888888777 99999999999998653 46899999986532 234567
Q ss_pred EEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 95 LGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 95 igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
+||++|++. .++..|+.|+.. .....+++.++.+++.+..++.+ |||||++||+||+.+|++|
T Consensus 79 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 158 (274)
T PRK13644 79 VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECL 158 (274)
T ss_pred eEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999975 356689988721 12345777889999987777665 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||+|||+.++..+++.|++++++|.|||++||+++ ++ ..||++++|++ |+++..|+++
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~ 220 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLEGEPE 220 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999877999999999987 45 56999999986 9999999853
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=289.98 Aligned_cols=184 Identities=20% Similarity=0.235 Sum_probs=158.1
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhh----cceEEEEecC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETF----ARILGYCEQN 101 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~----~~~igyv~Q~ 101 (531)
.++|+++++.. ..+.+.+||+|||||||||+|+|..++ .+|+|.++|.+... ... ++.+||++|+
T Consensus 8 ~l~~vs~~i~~------Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 8 GVNDADLAIAK------GEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred eEEeeEEEEcC------CCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 57888888763 356788888899999999999998763 57999999987542 222 5789999999
Q ss_pred CCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 042733 102 DIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISG 165 (531)
Q Consensus 102 ~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsg 165 (531)
+.++|++||+|+. ....+++.++++.+||.+..++.+ ||||||+|||||+.+|++|+|||||+|
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999999999972 123456788899999988777766 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 166 LDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 166 LD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+.++..+.+.++++.++ |+|||++||+++ ++...||++++|++ |+++..|+++
T Consensus 160 LD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~~ 215 (363)
T TIGR01186 160 LDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTPD 215 (363)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCHH
Confidence 9999999999999999764 899999999987 57788999999986 9999999864
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=266.27 Aligned_cols=172 Identities=23% Similarity=0.306 Sum_probs=150.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcceEEEEecCCCCCCCCcHHhHH---------
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFARILGYCEQNDIHSPHDTLYDFT--------- 114 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~~igyv~Q~~~~~~~ltv~e~~--------- 114 (531)
+-|.+|||||||||.+.++.|...+ .+|.|.++|.+++. ...|.-+||+||+...|..+||+|+.
T Consensus 32 iVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~ 109 (243)
T COG1137 32 IVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK 109 (243)
T ss_pred EEEEECCCCCCceeEEEEEEEEEec--CCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc
Confidence 4466677799999999999997653 46899999987653 23355799999999999999999981
Q ss_pred ----HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 042733 115 ----HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMG 185 (531)
Q Consensus 115 ----~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g 185 (531)
.+.+.+.+++++.+++.++++.+. |||||+.|||||+.+|+.++||||++|.||.+..++.++++.|+++|
T Consensus 110 d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rg 189 (243)
T COG1137 110 DLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRG 189 (243)
T ss_pred chhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCC
Confidence 133445778999999999998876 99999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 186 RTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 186 ~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
..|++|-|+.. |....|||..++.+ |+++++|++++
T Consensus 190 iGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~e 225 (243)
T COG1137 190 IGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPEE 225 (243)
T ss_pred ceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHHH
Confidence 99999999987 67889999999997 99999999854
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=276.25 Aligned_cols=192 Identities=22% Similarity=0.286 Sum_probs=158.8
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-eEEEEEEEcCcccch--------
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG-YITRNITVSGYPEKQ-------- 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g-~~~G~i~~~g~~~~~-------- 88 (531)
.|+++||+++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++. ..+|+|.++|.+...
T Consensus 4 ~l~~~nl~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFN--QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeC--CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 578888888884 356888888877776 999999999999976432 135899999976421
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhHHH-------------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHH
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDFTH-------------------CLYMFIEEGMELVELNPFRQALF-----EQRKRL 144 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~~~-------------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv 144 (531)
...++.++|++|++.+++.+|+.|+.. ....++++.++.+++.+..++.+ ||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 161 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRV 161 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHH
Confidence 234567999999999899899988732 11235778899999987666654 999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||+.+|++|+|||||+|||+.+++.+.+.|++++++ |+|||++||+++ .+...||++++|++ |++++.|+++
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQ-GHVFYDGSSQ 238 (262)
T ss_pred HHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999999999999999864 899999999987 46788999999986 9999999864
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=277.98 Aligned_cols=191 Identities=20% Similarity=0.328 Sum_probs=155.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++|++++|+. .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.
T Consensus 3 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~ 79 (277)
T PRK13652 3 LIETRDLCYSYSG-SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPITKENIREVRKF 79 (277)
T ss_pred eEEEEEEEEEeCC-CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHHHHhh
Confidence 3677888888842 235788888777776 99999999999998653 47999999976432 345667
Q ss_pred EEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 95 LGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 95 igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
+||++|++. .+...|+.++.. .....+++.++.+++.+..++.+ |||||++||+||+.+|++|
T Consensus 80 i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~ll 159 (277)
T PRK13652 80 VGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVL 159 (277)
T ss_pred eEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999963 344679988621 12235678899999987666655 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.||++++|++ |++++.|+++
T Consensus 160 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~g~~~ 223 (277)
T PRK13652 160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAYGTVE 223 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEECCHH
Confidence 999999999999999999999999875 899999999987 57789999999996 9999999863
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=284.12 Aligned_cols=193 Identities=16% Similarity=0.237 Sum_probs=159.3
Q ss_pred eEEEEEeEEEEEeCC-----------CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 042733 26 HYISLNEIVYSVDMP-----------QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYP 85 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~-----------~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~ 85 (531)
..|+++||+++|+.+ ...+++|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEE
Confidence 458899999888531 235889999888877 99999999999998653 46999999986
Q ss_pred cch------hhhcceEEEEecCC--CCCCCCcHHhHHH-------------HHHHHHHHHHHhcCCc-hhhhccH-----
Q 042733 86 EKQ------ETFARILGYCEQND--IHSPHDTLYDFTH-------------CLYMFIEEGMELVELN-PFRQALF----- 138 (531)
Q Consensus 86 ~~~------~~~~~~igyv~Q~~--~~~~~ltv~e~~~-------------~~~~~~~~~l~~l~l~-~~~~~~~----- 138 (531)
... ..+++.++|++|++ .++|.+|+.++.. +....+.+.++.+++. +..++.+
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 532 12456899999997 5788899988721 1234567789999994 4555544
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
||||||+||+||+.+|++|++||||+|||+.++.+++++|++++++ |.|+|++|||++ .+.+.||++++|.+ |+++.
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~-G~ive 242 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL-GHAVE 242 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999987 46778999999996 99999
Q ss_pred cCCCC
Q 042733 218 VGPLG 222 (531)
Q Consensus 218 ~G~~~ 222 (531)
.|+++
T Consensus 243 ~g~~~ 247 (331)
T PRK15079 243 LGTYD 247 (331)
T ss_pred EcCHH
Confidence 99864
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=270.72 Aligned_cols=187 Identities=22% Similarity=0.293 Sum_probs=153.5
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ig 96 (531)
++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.++
T Consensus 2 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~~~~~~~~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYG--ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLRRAPRAALARLG 77 (236)
T ss_pred EEEEeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcccCChhhhhhEE
Confidence 56788888874 356888888777776 99999999999998653 46899999976432 12335799
Q ss_pred EEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|++|++.+++..|++|+.. .....+++.++.+|+.+..++.+ |||||++||++|+.+|++++||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 157 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLD 157 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999988888999998721 12334677888999987666654 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||+|||+.++..+.+.|+++++ +|.|+|++||+++. +. .||++++|++ |+++..|++
T Consensus 158 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~-G~i~~~~~~ 216 (236)
T TIGR03864 158 EPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHR-GRVLADGAA 216 (236)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeC-CeEEEeCCH
Confidence 99999999999999999999985 58999999999873 44 5999999986 999988874
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=272.86 Aligned_cols=187 Identities=24% Similarity=0.310 Sum_probs=155.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h-hhcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E-TFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~-~~~~~ 94 (531)
|+++|+++.|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... . ..++.
T Consensus 3 i~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 3 LYLEGLSVSFD--GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred EEEEeeEEEcC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecCCCCHHHHHhcC
Confidence 67888888884 346888888777776 99999999999997653 46899999976432 1 13456
Q ss_pred EEEEecCCCCCCCCcHHhHHHH-------------------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHH
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHC-------------------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEF 150 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~-------------------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL 150 (531)
++|++|++.+++.+|++|+... ....+++.++.+++.+..++.+ ||||||+||+||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999999999999986211 2345678889999987666655 999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~~~~~~~~ 226 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GSVLAEGSL 226 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEeeCCH
Confidence 999999999999999999999999999999976 789999999987 57788999999986 999988875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=276.67 Aligned_cols=191 Identities=17% Similarity=0.234 Sum_probs=160.9
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..|+++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 6 ~~l~i~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 6 ARLRGEQLTLGYG--KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred cEEEEEEEEEEEC--CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEEhhhCCHHHHhh
Confidence 4678999999985 356899999888877 99999999999998653 46899999976432 23456
Q ss_pred eEEEEecCCCCCCCCcHHhHHH---------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH---------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~ 153 (531)
.++|++|++.+++..|++++.. .....+++.++.+++.+..++.+ |||||++||||++.+
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcC
Confidence 7999999998888899988731 12235678889999987666655 999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++++|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.||++++|++ |+++..|+++
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 229 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVAQGAPK 229 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999999874 899999999987 57889999999986 9999998864
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=274.37 Aligned_cols=191 Identities=20% Similarity=0.222 Sum_probs=154.0
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ---- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~---- 88 (531)
...++++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+. ...+|+|.++|.+...
T Consensus 10 ~~~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 10 QPQIKVENLNLWYG--EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred ceeEEEeeeEEEeC--CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 34678888888885 356888888888777 99999999999997542 1257999999976421
Q ss_pred -hhhcceEEEEecCCCCCCCCcHHhHHHH-----------HHHHHHHHHHhcCCc----hhhhccH-----HHHHHHHHH
Q 042733 89 -ETFARILGYCEQNDIHSPHDTLYDFTHC-----------LYMFIEEGMELVELN----PFRQALF-----EQRKRLTVA 147 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~~~~~ltv~e~~~~-----------~~~~~~~~l~~l~l~----~~~~~~~-----GerqRv~iA 147 (531)
..+++.++|++|++.+++ .|++|+... ....++++++.+++. +..++.+ ||||||+||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 166 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIA 166 (258)
T ss_pred HHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHH
Confidence 234667999999988877 899987221 123466788888873 3334433 999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 167 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 237 (258)
T PRK14268 167 RTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLM-GELIEFGQT 237 (258)
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999865 799999999987 46788999999986 999999875
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=279.85 Aligned_cols=186 Identities=20% Similarity=0.240 Sum_probs=148.9
Q ss_pred EEeEEEEEeCCCccccccEEEEEc---------CCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh----hcc
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFR---------PGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET----FAR 93 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~---------~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~----~~~ 93 (531)
++|+++.|+ .+.+|+|+|+.+. |||||||||+|+|+|..++ .+|+|.++|.+... .. .++
T Consensus 27 ~~~~~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 27 KEEILKKTG--QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhcC--CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcC
Confidence 445555553 2345555555555 5599999999999998653 46899999976432 11 235
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
.++|++|++.+++.+|+.|+.. .....+++.++.+++.+..++.+ |||||++||+||+.+|++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~il 182 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDIL 182 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 7999999999998999998721 11245677899999987766654 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 183 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 183 LMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999764 899999999987 57788999999986 999998875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=275.14 Aligned_cols=190 Identities=23% Similarity=0.312 Sum_probs=157.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++|+++.|+ ++.+|+|+|+.+.+| |||||||+++|+|..++ .+|+|.++|.+... ...++.
T Consensus 2 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~ 77 (258)
T PRK13548 2 MLEARNLSVRLG--GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLADWSPAELARR 77 (258)
T ss_pred eEEEEeEEEEeC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcccCCHHHhhhh
Confidence 367888888885 356888888877776 99999999999998653 46899999976432 234567
Q ss_pred EEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHh------h
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFV------A 152 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~------~ 152 (531)
++|++|++.+++.+|++|+.. .....+++.++.+++.+..++.+ ||||||+||++|+ .
T Consensus 78 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~ 157 (258)
T PRK13548 78 RAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDG 157 (258)
T ss_pred eEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 999999988888899998721 12345678889999987666655 9999999999999 5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTV-DMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||+++ ++.+.||++++|++ |+++..|+++
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 226 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-GRLVADGTPA 226 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-CEEEeeCCHH
Confidence 999999999999999999999999999998 56899999999987 46778999999986 9999888753
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=276.68 Aligned_cols=192 Identities=20% Similarity=0.269 Sum_probs=159.4
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++|++++|+.+++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~ 83 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITISKENLKEIRK 83 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEecCcCCHHHHhc
Confidence 468999999999533457999999888877 99999999999998653 46899999987532 24567
Q ss_pred eEEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.++|++|++. .++..|++|+.. .....++++++.+++.+..++.+ |||||++|||||+.+|++
T Consensus 84 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (271)
T PRK13632 84 KIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI 163 (271)
T ss_pred ceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 8999999974 567789998721 12234677889999987766654 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+|||||+|||+.++..+++.|++++++ ++|||++||+++. + ..||++++|++ |+++..|+++
T Consensus 164 llLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~ 227 (271)
T PRK13632 164 IIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIAQGKPK 227 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEEecCHH
Confidence 9999999999999999999999999876 5999999999873 4 47999999986 9999888753
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=269.82 Aligned_cols=181 Identities=24% Similarity=0.382 Sum_probs=143.3
Q ss_pred EEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEec
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQ 100 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q 100 (531)
++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. ..++.++|++|
T Consensus 2 ~~~l~~~~~--~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q 75 (213)
T cd03235 2 VEDLTVSYG--GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQ 75 (213)
T ss_pred cccceeEEC--CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEecc
Confidence 345666553 234566666555555 99999999999997653 4689999997653 34667999999
Q ss_pred CCCCC--CCCcHHhHHH---------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 101 NDIHS--PHDTLYDFTH---------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 101 ~~~~~--~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
++.+. +..|++|+.. ...+.+++.++.+++.+..++.+ |||||++||+||+.+|++|+
T Consensus 76 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 155 (213)
T cd03235 76 RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLL 155 (213)
T ss_pred ccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 97653 3479988721 12345677889999987666554 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ | +++.|
T Consensus 156 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 156 LDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 99999999999999999999999878999999999987 56788999999975 5 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=275.96 Aligned_cols=192 Identities=19% Similarity=0.262 Sum_probs=156.9
Q ss_pred EEEEEeEEEEEeCC-------CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--
Q 042733 27 YISLNEIVYSVDMP-------QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-- 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~-------~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-- 88 (531)
.|+++||++.|+.. ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEccccC
Confidence 36888999988531 356899999888877 99999999999998653 46899999976432
Q ss_pred -h---hhcceEEEEecCC--CCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHH
Q 042733 89 -E---TFARILGYCEQND--IHSPHDTLYDFTH------------CLYMFIEEGMELVELN-PFRQALF-----EQRKRL 144 (531)
Q Consensus 89 -~---~~~~~igyv~Q~~--~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv 144 (531)
. ..++.++|++|++ .+.+..|+.|+.. .....+++.++.+++. ...++.+ |||||+
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv 159 (265)
T TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRI 159 (265)
T ss_pred HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHH
Confidence 1 2456799999986 4667789988621 1234567788999995 5555544 999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.||++++|++ |+++..|+++
T Consensus 160 ~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 236 (265)
T TIGR02769 160 NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-GQIVEECDVA 236 (265)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-CEEEEECCHH
Confidence 9999999999999999999999999999999999999875 899999999987 46678999999986 9999998863
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=275.89 Aligned_cols=192 Identities=19% Similarity=0.228 Sum_probs=157.6
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++|++++|+...+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~ 83 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAITDDNFEKLRK 83 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHHHHh
Confidence 458899999998633345899999888877 99999999999998653 47999999976532 34567
Q ss_pred eEEEEecCCC-CCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDI-HSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~-~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.++|++|++. .++..|+.++. ......++++++.+++.+..++.+ |||||++|||||+.+|++
T Consensus 84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (269)
T PRK13648 84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV 163 (269)
T ss_pred heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 8999999974 66777887651 112345677889999987666654 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.. +|++++|++ |+++..|+++
T Consensus 164 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~-G~i~~~g~~~ 227 (269)
T PRK13648 164 IILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNK-GTVYKEGTPT 227 (269)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEEC-CEEEEecCHH
Confidence 9999999999999999999999999865 899999999987 4554 999999986 9999998864
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=272.68 Aligned_cols=191 Identities=19% Similarity=0.165 Sum_probs=154.2
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc---eEEEEEEEcCcccc-----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG---YITRNITVSGYPEK----- 87 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g---~~~G~i~~~g~~~~----- 87 (531)
...++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++. ..+|+|.++|.+..
T Consensus 5 ~~~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 5 EAIIETENLNLFYT--DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred CceEEEeeeEEEeC--CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 34689999999985 356899999888887 999999999999975431 24799999997642
Q ss_pred hhhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc----hhhhccH-----HHHHHHHH
Q 042733 88 QETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELN----PFRQALF-----EQRKRLTV 146 (531)
Q Consensus 88 ~~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~----~~~~~~~-----GerqRv~i 146 (531)
....++.++|++|++.+++ .|++|+.. .....+++.++.+++. +..++.+ |||||++|
T Consensus 83 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~l 161 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCI 161 (254)
T ss_pred HHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHH
Confidence 1235677999999987774 89998721 1123456677777762 3333333 99999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+|+.+|++|+|||||+|||+.++..+++.|++++ ++.|||++||+++ ++.+.+|++++|++ |+++..|++
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 233 (254)
T PRK14273 162 ARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFLN-GCIEEESST 233 (254)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999996 4799999999987 56788999999986 999998875
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=276.47 Aligned_cols=188 Identities=23% Similarity=0.316 Sum_probs=154.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-----hhhhcc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-----QETFAR 93 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-----~~~~~~ 93 (531)
|+++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. ....++
T Consensus 2 l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~ 77 (271)
T PRK13638 2 LATSDLWFRYQ--DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLDYSKRGLLALRQ 77 (271)
T ss_pred eEEEEEEEEcC--CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcccccCCHHHHHh
Confidence 67889999885 356899999888777 99999999999997653 4689999997652 123456
Q ss_pred eEEEEecCCCC-CCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDIH-SPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~~-~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.++|++|++.. ++..|+.++.. .....+++.++.+++.+..++.+ |||||++||++|+.+|++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~l 157 (271)
T PRK13638 78 QVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARY 157 (271)
T ss_pred heEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 79999998653 34456766411 12234667888899887666654 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 158 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (271)
T PRK13638 158 LLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILTHGAP 220 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999877999999999987 46788999999986 999999875
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=266.98 Aligned_cols=200 Identities=22% Similarity=0.279 Sum_probs=166.6
Q ss_pred hhhhhcccCCCccccccceEEEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc
Q 042733 8 AIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK 87 (531)
Q Consensus 8 ~i~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~ 87 (531)
.+++++++|+..-+ ..++|+|+++.. ..+.+.|||||||||||+|+|+|..++ .+|+|.++|.++.
T Consensus 4 lL~v~~l~k~FGGl------~Al~~Vsl~v~~------Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it 69 (250)
T COG0411 4 LLEVRGLSKRFGGL------TAVNDVSLEVRP------GEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDIT 69 (250)
T ss_pred eeeeccceeecCCE------EEEeceeEEEcC------CeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccC
Confidence 46677777773333 256777777753 256788888999999999999997653 4689999998764
Q ss_pred h----hhhcceEEEEecCCCCCCCCcHHhHH-----------------------HHHHHHHHHHHHhcCCchhhhccH--
Q 042733 88 Q----ETFARILGYCEQNDIHSPHDTLYDFT-----------------------HCLYMFIEEGMELVELNPFRQALF-- 138 (531)
Q Consensus 88 ~----~~~~~~igyv~Q~~~~~~~ltv~e~~-----------------------~~~~~~~~~~l~~l~l~~~~~~~~-- 138 (531)
. ...+..++-.+|...+|+++||.|+. .+..++..++++.+||.+.++...
T Consensus 70 ~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~ 149 (250)
T COG0411 70 GLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGN 149 (250)
T ss_pred CCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhc
Confidence 2 23456788899999999999999981 122345777899999999988876
Q ss_pred ---HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 139 ---EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 139 ---GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
|||||+.|||||+++|++|+||||.+||.+....++.+.+++++++ |.||+++.||++. +..+||||++|+. |+
T Consensus 150 LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~-G~ 227 (250)
T COG0411 150 LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNY-GE 227 (250)
T ss_pred CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccC-Cc
Confidence 8999999999999999999999999999999999999999999985 7999999999984 8899999999996 99
Q ss_pred eeecCCCCC
Q 042733 215 EISVGPLGP 223 (531)
Q Consensus 215 ~v~~G~~~~ 223 (531)
+++.|+|++
T Consensus 228 ~IAeG~P~e 236 (250)
T COG0411 228 VIAEGTPEE 236 (250)
T ss_pred CcccCCHHH
Confidence 999999864
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=276.80 Aligned_cols=191 Identities=20% Similarity=0.281 Sum_probs=153.6
Q ss_pred EEEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------
Q 042733 27 YISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------ 88 (531)
.|+++|++++|+... +++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~ 79 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLITSTSKNKD 79 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccC
Confidence 367889988885321 35888888887777 99999999999998653 47999999976431
Q ss_pred -hhhcceEEEEecCC--CCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHH
Q 042733 89 -ETFARILGYCEQND--IHSPHDTLYDFTH-----------CLYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAV 148 (531)
Q Consensus 89 -~~~~~~igyv~Q~~--~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~ 148 (531)
...++.++|++|++ .++ ..|++|+.. .....+++.++.+++.+ ..++.+ |||||++||+
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~ 158 (280)
T PRK13649 80 IKQIRKKVGLVFQFPESQLF-EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAG 158 (280)
T ss_pred HHHHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 23566799999986 344 469988721 11234667788889863 444443 9999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++...||++++|++ |+++..|+++
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 230 (280)
T PRK13649 159 ILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-GKLVLSGKPK 230 (280)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999999999877999999999986 56778999999986 9999888753
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=266.06 Aligned_cols=183 Identities=22% Similarity=0.280 Sum_probs=147.4
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEEE
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGYC 98 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv 98 (531)
+++|++++|+. +. .|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++.++|+
T Consensus 2 ~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 2 RLDKIRFSYGE--QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred EEEeEEEEeCC--Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCcCCHhHccEEEE
Confidence 46667666641 11 2566555555 99999999999998653 46899999976532 1234679999
Q ss_pred ecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 99 EQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
+|++.+++.+|++|+.. .....+++.++.+++.+..++.+ |||||++||++|+.+|++++||||
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP 155 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEP 155 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999999999998721 12345778899999987666654 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 163 ISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|
T Consensus 156 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 156 FAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 9999999999999999999764 899999999986 56778999999986 8987654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=275.08 Aligned_cols=191 Identities=26% Similarity=0.363 Sum_probs=160.5
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++
T Consensus 10 ~~l~i~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~ 85 (265)
T PRK10575 10 TTFALRNVSFRVP--GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQPLESWSSKAFAR 85 (265)
T ss_pred ceEEEeeEEEEEC--CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEehhhCCHHHHhh
Confidence 4689999999995 357999999888877 99999999999998653 4689999997642 233456
Q ss_pred eEEEEecCCCCCCCCcHHhHHH---------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH---------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~ 153 (531)
.++|++|+..+++.+|+.++.. .....+++.++.+++.+..++.+ |||||++||++|+.+
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 165 (265)
T PRK10575 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQD 165 (265)
T ss_pred heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 7999999988888899988622 12335677889999977666554 999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++|+|||||+|||+.+++.+.+.|++++++ |.|||++||+++ ++.+.||++++|++ |+++..|+++
T Consensus 166 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 233 (265)
T PRK10575 166 SRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIAQGTPA 233 (265)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence 9999999999999999999999999999865 899999999987 57788999999986 9999988764
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=271.56 Aligned_cols=190 Identities=20% Similarity=0.225 Sum_probs=152.7
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccc---hhhh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEK---QETF 91 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~---~~~~ 91 (531)
.++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ ...+|+|.++|.+.. ...+
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFG--QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEEC--CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 367778877774 345777777777666 99999999999997542 135799999997653 2345
Q ss_pred cceEEEEecCCCCCCCCcHHhHHH-------------HHHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHHHH
Q 042733 92 ARILGYCEQNDIHSPHDTLYDFTH-------------CLYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVAVE 149 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~~ltv~e~~~-------------~~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA~a 149 (531)
++.+||++|++.+++.+|+.|+.. ...+.+.+.++.+++.+ ..++. .|||||++|||+
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 160 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence 678999999998888999998731 11234567788888743 23333 399999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||+++ ++.+.||++++|++ |+++..|++
T Consensus 161 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14247 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-GQIVEWGPT 229 (250)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-CeEEEECCH
Confidence 9999999999999999999999999999999864 899999999987 46778999999986 999998875
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=260.66 Aligned_cols=178 Identities=39% Similarity=0.664 Sum_probs=149.4
Q ss_pred eEEEEEeEEEEEeCC----CccccccEEEEEcCC---------CchHHHHHHHHhCCC--CCceEEEEEEEcCcccchhh
Q 042733 26 HYISLNEIVYSVDMP----QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRK--PGGYITRNITVSGYPEKQET 90 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~----~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~--~~g~~~G~i~~~g~~~~~~~ 90 (531)
+.++++|++++|+.. .+.+|+++|+.+.+| |||||||+|+|+|.. ++ .+|++.++|.+.....
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~--~~G~i~~~g~~~~~~~ 79 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG--VSGEVLINGRPLDKRS 79 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--CceEEEECCEeCchHh
Confidence 357899999999632 257999999988887 999999999999986 53 5799999998765444
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARA 170 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~ 170 (531)
.++.++|++|++.+++.+|++|+..... . +. ..+.|||||++|||+|+.+|++++|||||+|||+.+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~-~----~~--------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~ 146 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA-K----LR--------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH-H----hc--------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH
Confidence 5678999999998888999998643111 0 00 445599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 171 ATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 171 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
++.+.+.|++++++|+|+|+++|+++.++.+.||++++|++ |++++.|
T Consensus 147 ~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 147 ALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999877999999999987557788999999986 8988754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=267.38 Aligned_cols=186 Identities=22% Similarity=0.299 Sum_probs=149.9
Q ss_pred EEEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h---
Q 042733 27 YISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E--- 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~--- 89 (531)
.|+++|++++|+.+. ..+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEcccCCHHHHH
Confidence 467788887775321 24777777777666 99999999999998653 46899999976432 1
Q ss_pred hh-cceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh
Q 042733 90 TF-ARILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA 152 (531)
Q Consensus 90 ~~-~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~ 152 (531)
.. ++.++|++|++.+++.+|+.|+.. .....+++.++.+++.+..++.+ |||||++||++|+.
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 11 357999999998888899988721 12345778899999987666654 99999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+ +.+|++++|++ |+++.
T Consensus 164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~i~~ 226 (228)
T PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQLQE 226 (228)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEe
Confidence 99999999999999999999999999999765 899999999987 34 55999999986 88864
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=281.56 Aligned_cols=193 Identities=19% Similarity=0.235 Sum_probs=158.6
Q ss_pred eEEEEEeEEEEEeCC--------CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch
Q 042733 26 HYISLNEIVYSVDMP--------QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~--------~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~ 88 (531)
..|+++||++.|+.. ...+|+|||+.+.+| |||||||+++|+|..+. .+|+|.++|.+...
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l~~ 81 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDLLK 81 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEcCc
Confidence 357888888888531 236888888888877 99999999999998653 46999999976432
Q ss_pred ------hhhcceEEEEecCC--CCCCCCcHHhHH------------HHHHHHHHHHHHhcCCch-hhhccH-----HHHH
Q 042733 89 ------ETFARILGYCEQND--IHSPHDTLYDFT------------HCLYMFIEEGMELVELNP-FRQALF-----EQRK 142 (531)
Q Consensus 89 ------~~~~~~igyv~Q~~--~~~~~ltv~e~~------------~~~~~~~~~~l~~l~l~~-~~~~~~-----Gerq 142 (531)
..+++.++|++|++ .+.|.+|+.+.. .....++.+.++.+|+.+ ..++.+ ||||
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~Q 161 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ 161 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHH
Confidence 23566899999997 578888987652 122356788899999963 445544 9999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 143 RLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 143 Rv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+||+||+.+|++|++||||+|||+.++.+++++|++++++ |.|+|++|||++ .+.+.||++++|.+ |+++..|+.
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~-G~ive~g~~ 239 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL-GRCVEKGTK 239 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999999875 999999999987 46678999999996 999999986
Q ss_pred C
Q 042733 222 G 222 (531)
Q Consensus 222 ~ 222 (531)
+
T Consensus 240 ~ 240 (327)
T PRK11308 240 E 240 (327)
T ss_pred H
Confidence 4
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=281.06 Aligned_cols=194 Identities=13% Similarity=0.191 Sum_probs=155.4
Q ss_pred EEEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCC-Cc-eEEEEEEEcCcccch---hh
Q 042733 27 YISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP-GG-YITRNITVSGYPEKQ---ET 90 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~-~g-~~~G~i~~~g~~~~~---~~ 90 (531)
.|+++||++.|+.+. ..+|+|||+.+.+| |||||||+++|+|..+ ++ ..+|+|.++|.+... ..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 367888888885322 35788888777777 9999999999999764 22 357999999986532 11
Q ss_pred ----hcceEEEEecCC--CCCCCCcHHhHH------------HHHHHHHHHHHHhcCCch---hhhccH-----HHHHHH
Q 042733 91 ----FARILGYCEQND--IHSPHDTLYDFT------------HCLYMFIEEGMELVELNP---FRQALF-----EQRKRL 144 (531)
Q Consensus 91 ----~~~~igyv~Q~~--~~~~~ltv~e~~------------~~~~~~~~~~l~~l~l~~---~~~~~~-----GerqRv 144 (531)
.++.++|++|++ .+.|.+|+.++. .+..+++.+.++.+|+.+ ..++.. ||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 224699999997 478888887541 123456788899999964 233333 999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+||+||+.+|++|++||||+|||+.++.+++++|+++++ .|.|+|++|||++ .+.+.+|++++|.+ |+++..|+++
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~-G~ive~g~~~ 239 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYA-GQVVETGKAH 239 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999999999999987 4999999999987 46778999999996 9999999864
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=265.95 Aligned_cols=184 Identities=22% Similarity=0.256 Sum_probs=151.1
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEEE
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGYC 98 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv 98 (531)
+++|+++.|+ ..++++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.++|+
T Consensus 2 ~~~~l~~~~~----~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~i~~v 75 (213)
T TIGR01277 2 ALDKVRYEYE----HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSML 75 (213)
T ss_pred eEEeeeEEeC----CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcccCChhccceEEE
Confidence 5677777764 1355677666655 99999999999998653 46899999976532 2345679999
Q ss_pred ecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 99 EQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
+|++.+++.+|+.|+.. .....++++++.+++.+..++.+ |||||++||++|+.+|++++||||
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 155 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEP 155 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999998899998732 11245677899999987766654 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 163 ISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|.
T Consensus 156 t~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 156 FSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 9999999999999999999865 899999999986 46778999999986 99988774
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=271.66 Aligned_cols=190 Identities=19% Similarity=0.235 Sum_probs=151.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~~ 94 (531)
|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+..+.+|+|.++|.+... .. .+..
T Consensus 1 l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVE--DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEEC--CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 36788888885 356888888877777 999999999999983101357999999976432 12 2344
Q ss_pred EEEEecCCCCCCCCcHHhHHHH------------------HHHHHHHHHHhcCCc-hhhh------ccHHHHHHHHHHHH
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHC------------------LYMFIEEGMELVELN-PFRQ------ALFEQRKRLTVAVE 149 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~------------------~~~~~~~~l~~l~l~-~~~~------~~~GerqRv~iA~a 149 (531)
++|++|++.+++.+|+.++... ..+.+++.++.+++. ...+ .+.|||||++||++
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~a 158 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQM 158 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHH
Confidence 8999999999999999886210 123466778888886 3332 33499999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhc-cCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYS-FDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~d~v~lL~~~G~~v~~G~~ 221 (531)
|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... ||++++|++ |+++..|++
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~i~~~g~~ 229 (243)
T TIGR01978 159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GRIVKSGDV 229 (243)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CEEEEecCH
Confidence 99999999999999999999999999999999877899999999987 45666 799999986 999998875
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=271.22 Aligned_cols=190 Identities=21% Similarity=0.214 Sum_probs=153.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc---eEEEEEEEcCcccc-----hh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG---YITRNITVSGYPEK-----QE 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g---~~~G~i~~~g~~~~-----~~ 89 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++. ..+|+|.++|.+.. ..
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYG--SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeC--CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 478888888885 346888888877777 999999999999986532 24799999997653 12
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHHH-------------HHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTHC-------------LYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVA 147 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~~-------------~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA 147 (531)
.+++.++|++|++.+++.+|+.|+... ....++++++.+++.+ ..++. .|||||++||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA 161 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence 356679999999999999999987321 1124567778888732 23333 3999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...||++++|++ |+++..|++
T Consensus 162 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (253)
T PRK14267 162 RALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYL-GKLIEVGPT 232 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999865 699999999987 56778999999986 999998875
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=270.57 Aligned_cols=189 Identities=20% Similarity=0.231 Sum_probs=153.3
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h-hhcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E-TFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~-~~~~~ 94 (531)
|+++||++.|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... . ..++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 76 (230)
T TIGR03410 1 LEVSNLNVYYG--QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDITKLPPHERARAG 76 (230)
T ss_pred CEEEeEEEEeC--CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCCCCHHHHHHhC
Confidence 36788888885 356888888888877 99999999999998653 46899999876431 1 23467
Q ss_pred EEEEecCCCCCCCCcHHhHHHH--------HHHHHHHHHHhcC-CchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHC--------LYMFIEEGMELVE-LNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~--------~~~~~~~~l~~l~-l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
++|++|++.+++.+|+.++... .....++.++.++ +.+..++.+ |||||++||++|+.+|++++||
T Consensus 77 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlD 156 (230)
T TIGR03410 77 IAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLD 156 (230)
T ss_pred eEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 9999999999998999987221 1223456666665 444444444 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||+|||+.++..+.+.|++++++ |+|||++||+++ ++...||+++++++ |+++..|+.+
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 217 (230)
T TIGR03410 157 EPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVASGAGD 217 (230)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999875 899999999987 57778999999986 9999998864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=276.56 Aligned_cols=194 Identities=20% Similarity=0.245 Sum_probs=158.8
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCce-EEEEEEEcCcccch---hhhc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGY-ITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~-~~G~i~~~g~~~~~---~~~~ 92 (531)
..|+++|+++.|+...+++|+++|+.+.+| |||||||+|+|+|..++.. ..|+|.++|.+... ...+
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 357899999998533346899999888777 9999999999999764311 24899999987532 2345
Q ss_pred ceEEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCC
Q 042733 93 RILGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 93 ~~igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ 155 (531)
+.+||++|++. .++..||.|+.. ...+++++.++.+++.+..++.+ |||||++||+||+.+|+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~ 163 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK 163 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 67999999974 567789998721 12245777899999987766655 99999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 156 IISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|+|||||+|||+.++..+.+.|++++++ |+|||++||+++. + ..||++++|++ |+++..|+++
T Consensus 164 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~~~g~~~ 228 (282)
T PRK13640 164 IIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLLAQGSPV 228 (282)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999865 8999999999874 4 57999999986 9999999863
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=261.92 Aligned_cols=185 Identities=27% Similarity=0.456 Sum_probs=148.2
Q ss_pred EEEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-eEEEEEEEcCcccch--hhhc
Q 042733 27 YISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG-YITRNITVSGYPEKQ--ETFA 92 (531)
Q Consensus 27 ~l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g-~~~G~i~~~g~~~~~--~~~~ 92 (531)
.++|+|++|.|+.+ ++.+|+++|+.+.+| |||||||+++|+|..++. ..+|++.++|.+... ...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 57999999999754 457999999988887 999999999999986522 457999999986532 2356
Q ss_pred ceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAAT 172 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~ 172 (531)
+.++|++|++.+++.+||+|+...... . . .-....+.+.|||||++||+||+.+|++++|||||+|||+.+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~-~----~--~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~ 155 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALR-C----K--GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTAL 155 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhh-h----c--cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHH
Confidence 779999999999999999987432111 0 0 11223344559999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 173 TVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 173 ~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
.+.+.|++++++ +.|+|+++|+...++.+.||++++|++ |+++..|
T Consensus 156 ~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~g 202 (202)
T cd03233 156 EILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYYG 202 (202)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEecC
Confidence 999999999875 677777766654467889999999996 9988754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=275.49 Aligned_cols=190 Identities=23% Similarity=0.309 Sum_probs=157.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-----hhhcc
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-----ETFAR 93 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-----~~~~~ 93 (531)
++++|++++|+ +.+.+++|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 2 l~~~~l~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 78 (275)
T PRK13639 2 LETRDLKYSYP-DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIKYDKKSLLEVRK 78 (275)
T ss_pred EEEEEEEEEeC-CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECccccchHHHHHh
Confidence 67889999885 2346889999888877 99999999999998653 46899999976521 23467
Q ss_pred eEEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.++|++|++. .+...|+.|+.. .....+.++++.+++.+..++.+ |||||++||++|+.+|++
T Consensus 79 ~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 158 (275)
T PRK13639 79 TVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEI 158 (275)
T ss_pred heEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 8999999963 334579988721 12245778899999987777665 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++..|+++
T Consensus 159 lllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIKEGTPK 222 (275)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999877999999999987 56778999999986 9999998863
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=270.62 Aligned_cols=188 Identities=22% Similarity=0.252 Sum_probs=152.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~ 78 (241)
T PRK14250 3 EIEFKEVSYSSF--GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVDIKTIDVIDLRRK 78 (241)
T ss_pred eEEEEeEEEEeC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhhhcChHHhhhc
Confidence 467777777774 345777777777666 99999999999997653 46899999976432 234667
Q ss_pred EEEEecCCCCCCCCcHHhHHH-------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
++|++|++.+++ .|++|+.. .....+.+.++.+++. +..++.+ |||||++||+||+.+|++|+|||
T Consensus 79 i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 157 (241)
T PRK14250 79 IGMVFQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157 (241)
T ss_pred EEEEecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999987776 69988722 1123567788999996 4555543 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (241)
T PRK14250 158 PTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVEYAKT 216 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence 99999999999999999999874 999999999987 56778999999996 999988875
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=270.74 Aligned_cols=191 Identities=20% Similarity=0.285 Sum_probs=154.2
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC---CceEEEEEEEcCcccch----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP---GGYITRNITVSGYPEKQ---- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~---~g~~~G~i~~~g~~~~~---- 88 (531)
|..|+++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..+ ....+|+|.++|.+...
T Consensus 4 ~~~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 4 PPKMEARGLSFFYG--DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred CcEEEEeeeEEEEC--CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 55689999999995 356899999888877 9999999999999742 11247999999976431
Q ss_pred -hhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhc-----cHHHHHHHHH
Q 042733 89 -ETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQA-----LFEQRKRLTV 146 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~-----~~GerqRv~i 146 (531)
..+++.++|++|++.+++ .|+.|+.. .....+++.++.+++.+ ..++ +.||||||+|
T Consensus 82 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 160 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCI 160 (253)
T ss_pred HHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 234678999999988877 59988721 11234666788888743 2232 2399999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 232 (253)
T PRK14242 161 ARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM-GKLIEVGPT 232 (253)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999999999954 799999999987 56788999999986 999988875
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=275.52 Aligned_cols=191 Identities=17% Similarity=0.235 Sum_probs=154.7
Q ss_pred EEEEEeEEEEEeCC----CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----h
Q 042733 27 YISLNEIVYSVDMP----QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~----~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~ 89 (531)
.++++|++++|+.. .+.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeccccccHH
Confidence 47788888888532 245888888877776 99999999999998653 46899999976532 2
Q ss_pred hhcceEEEEecCCC-CCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh
Q 042733 90 TFARILGYCEQNDI-HSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA 152 (531)
Q Consensus 90 ~~~~~igyv~Q~~~-~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~ 152 (531)
..++.+||++|++. .+...|+.++. ......++++++.+|+.+..++.+ |||||++||++|+.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~ 161 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM 161 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 35678999999974 23345777651 112345778899999988777665 99999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|++++|||||+|||+.++..+.+.|++++++ |.|||++||+++. +. .||++++|++ |+++..|+++
T Consensus 162 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~l~~-G~i~~~g~~~ 229 (280)
T PRK13633 162 RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIVMDS-GKVVMEGTPK 229 (280)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999999999764 9999999999873 54 4999999986 9999999863
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=258.54 Aligned_cols=179 Identities=45% Similarity=0.732 Sum_probs=146.4
Q ss_pred EEEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 27 YISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 27 ~l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
.++++|+++.|+.+ ++++|+++|+.+.+| |||||||+|+|+|.......+|++.++|.+.. ...++.+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhce
Confidence 46889999998632 246899999888777 99999999999996421235799999998754 3456679
Q ss_pred EEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 042733 96 GYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVI 175 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~ 175 (531)
+|++|++.+++..|++|+..... .++ ..+.|||||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~-----~~~--------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~ 148 (192)
T cd03232 82 GYVEQQDVHSPNLTVREALRFSA-----LLR--------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV 148 (192)
T ss_pred EEecccCccccCCcHHHHHHHHH-----HHh--------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHH
Confidence 99999998899999998743211 011 44559999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 176 RMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 176 ~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
+.|++++++|+|+|++||+++.++.+.||++++|+++|++++.|
T Consensus 149 ~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 149 RFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999987799999999998744678899999998438998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=275.88 Aligned_cols=191 Identities=21% Similarity=0.306 Sum_probs=153.8
Q ss_pred EEEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-------
Q 042733 27 YISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK------- 87 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~------- 87 (531)
.|+++|++++|+... ..+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+..
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEccccccccc
Confidence 578999999996321 25899999888877 99999999999998653 4689999987542
Q ss_pred -hhhhcceEEEEecCCCC-CCCCcHHhHHH-----------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHH
Q 042733 88 -QETFARILGYCEQNDIH-SPHDTLYDFTH-----------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAV 148 (531)
Q Consensus 88 -~~~~~~~igyv~Q~~~~-~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~ 148 (531)
...+++.++|++|++.. ....|++|+.. .....+++.++.+++. +..++.+ |||||++|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 12356679999998632 23458888621 1123466778888984 5555544 9999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+.+|++|+|||||+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 235 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE-GKVISIGSP 235 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999764 899999999987 57788999999986 999998875
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=271.81 Aligned_cols=189 Identities=24% Similarity=0.342 Sum_probs=157.3
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~i 95 (531)
|+++|+++.|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++.+
T Consensus 2 l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i 77 (256)
T TIGR03873 2 LRLSRVSWSAG--GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLHGLSRRARARRV 77 (256)
T ss_pred ceEEeEEEEEC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcccCCHHHHhhhe
Confidence 57888888885 356888888887776 99999999999997653 46899999976432 2345579
Q ss_pred EEEecCCCCCCCCcHHhHHH---------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTH---------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ 155 (531)
+|++|++.+++..|+.|+.. .....+.+.++.+++.+..++.+ |||||++||++|+.+|+
T Consensus 78 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (256)
T TIGR03873 78 ALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPK 157 (256)
T ss_pred EEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99999987778889998721 11234677888899987666655 99999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 156 IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++|||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+.||++++|++ |+++..|+.+
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (256)
T TIGR03873 158 LLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAGPPR 222 (256)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEecCHH
Confidence 99999999999999999999999999877899999999987 57788999999986 9999998764
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=286.45 Aligned_cols=184 Identities=18% Similarity=0.228 Sum_probs=149.7
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh----hcceEEEEecC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET----FARILGYCEQN 101 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~----~~~~igyv~Q~ 101 (531)
.++|+++++.. .++.+.+||||||||||+|+|+|..++ .+|+|.++|.+... .. .++.+||++|+
T Consensus 43 ~L~~isl~i~~------Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~ 114 (400)
T PRK10070 43 GVKDASLAIEE------GEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQS 114 (400)
T ss_pred EEEeEEEEEcC------CCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECC
Confidence 45555555532 234555566699999999999998653 46899999986532 11 23579999999
Q ss_pred CCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 042733 102 DIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISG 165 (531)
Q Consensus 102 ~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsg 165 (531)
..+++++|++|+.. ...+++++.++.+++.+..++.+ ||||||+|||||+.+|++|||||||+|
T Consensus 115 ~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 115 FALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 99999999999721 12345778899999988777665 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 166 LDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 166 LD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+.++..+.+.|+++++ .|+|||++||+++ ++..+||++++|++ |+++..|+++
T Consensus 195 LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~~ 250 (400)
T PRK10070 195 LDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTPD 250 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCHH
Confidence 999999999999999976 4899999999987 57788999999986 9999998764
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=269.53 Aligned_cols=190 Identities=18% Similarity=0.248 Sum_probs=151.2
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCC---CCceEEEEEEEcCcccch-----
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRK---PGGYITRNITVSGYPEKQ----- 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~---~~g~~~G~i~~~g~~~~~----- 88 (531)
+.++++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|.. ++...+|++.++|.+...
T Consensus 2 ~~l~~~~~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 2 VKIDARDVNFWYG--DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred cEEEEEEEEEEEC--CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 3567888888874 346788888777766 999999999999952 221246999999986532
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVA 147 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA 147 (531)
...++.++|++|++.+++ .|+.|+.. .....+++.++.+++.+ ..+.. .|||||++||
T Consensus 80 ~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIA 158 (250)
T ss_pred HHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHH
Confidence 234667999999988776 59988721 11234667788888743 23333 3999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|+.+|++++|||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 159 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~~~~~~~~ 229 (250)
T PRK14245 159 RAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GEMVEYDDT 229 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999985 4799999999987 57788999999986 999999975
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=297.31 Aligned_cols=194 Identities=19% Similarity=0.292 Sum_probs=159.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h-hhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E-TFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~-~~~~ 93 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+++..+|+|.++|.+... . ..++
T Consensus 5 ~l~~~nl~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFG--GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeC--CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 467778887774 345777777776666 999999999999976532357999999976532 1 2346
Q ss_pred eEEEEecCCCCCCCCcHHhHHH--------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH--------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~--------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
.+||++|++.+++.+||+|+.. .....+++.++.+++.+..++.+ ||||||+||++|+.+|
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 162 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 7999999998889999998621 11245778899999977666655 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPS 224 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~ 224 (531)
++|||||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+.||++++|++ |++++.|++++.
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 230 (506)
T PRK13549 163 RLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGTRPAAGM 230 (506)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeeecccccC
Confidence 999999999999999999999999999878999999999987 56778999999986 999999987653
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=266.49 Aligned_cols=188 Identities=22% Similarity=0.331 Sum_probs=156.7
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igy 97 (531)
|+++|++++|+ .+.+++++|+.+.|| |||||||+|+|+|..++ ..|+|.++|.+... ...++.++|
T Consensus 1 l~~~~l~~~~~--~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYG--GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITNLPPHKRPVNT 76 (232)
T ss_pred CEEEeEEEEeC--CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCChhhcceEE
Confidence 36788888885 346888888888877 99999999999998653 46899999976532 123567999
Q ss_pred EecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
++|++.+++.+|+.++.. .....++++++.+++.+..++.+ |||||++|||+|+.+|++++|||
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE 156 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999888899988722 11235677888999987766655 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++ |+++..|+.
T Consensus 157 P~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 157 PLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999875 899999999986 47788999999986 999988864
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=269.84 Aligned_cols=175 Identities=22% Similarity=0.246 Sum_probs=154.5
Q ss_pred cccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hh---h-hcceEEEEecCCCCCCCC
Q 042733 45 LNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QE---T-FARILGYCEQNDIHSPHD 108 (531)
Q Consensus 45 L~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~---~-~~~~igyv~Q~~~~~~~l 108 (531)
++|+|+.++.| |||||||+|+|.++.++ ..|+|.++|.++. .. + .++.+++|+|+..++|+.
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep--t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP--TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 45666666666 99999999999998764 5799999998753 11 2 356899999999999999
Q ss_pred cHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 042733 109 TLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAAT 172 (531)
Q Consensus 109 tv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~ 172 (531)
||.|+ +.+++++..+.++.+||..+.++.+ ||||||.+||||+.+|+||++|||+|.|||--+.
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~ 201 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT 201 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence 99998 5677888999999999999998887 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 173 TVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 173 ~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
++.+.|.++.++ ++|||++|||.+ |..++-|||.+|++ |+++-.|+|++
T Consensus 202 ~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkd-G~ivQ~Gtp~e 251 (386)
T COG4175 202 EMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMKD-GEIVQVGTPEE 251 (386)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEecC-CeEEEeCCHHH
Confidence 999999999875 999999999998 68899999999986 99999999864
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=283.62 Aligned_cols=172 Identities=20% Similarity=0.351 Sum_probs=146.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhhcceEEEEecCCCCCCCCcHHhHHH----
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETFARILGYCEQNDIHSPHDTLYDFTH---- 115 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~~~~igyv~Q~~~~~~~ltv~e~~~---- 115 (531)
++.+.+||||||||||||+|+|..++ .+|+|.++|.+... ...++.++|++|+..+++++||+|+..
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence 34566666799999999999998653 46899999976421 224578999999999999999999832
Q ss_pred -HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeE
Q 042733 116 -CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTV 188 (531)
Q Consensus 116 -~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tv 188 (531)
.....+++.++.+++.+..++.+ ||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ti 182 (352)
T PRK11144 103 KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI 182 (352)
T ss_pred hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 22356788999999988777665 9999999999999999999999999999999999999999999875 8999
Q ss_pred EEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 189 VCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 189 i~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++||+++ ++..+||++++|++ |+++..|+++
T Consensus 183 i~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 214 (352)
T PRK11144 183 LYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLE 214 (352)
T ss_pred EEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHH
Confidence 99999986 57889999999996 9999999864
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=268.50 Aligned_cols=191 Identities=18% Similarity=0.219 Sum_probs=154.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C-ceEEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G-GYITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~-g~~~G~i~~~g~~~~~-----~ 89 (531)
.++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+ + ...+|+|.++|.+... .
T Consensus 4 ~l~~~nl~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 4 KVKLEQLNVHFG--KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred EEEEEEEEEEeC--CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 478889998885 356899999888777 9999999999999753 2 1246999999976531 2
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhc-----cHHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQA-----LFEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~-----~~GerqRv~iA~ 148 (531)
..++.++|++|+..+++..|+.|+.. .....+++.++.+++.. ..+. +.|||||++||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 161 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR 161 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence 35678999999999999899988721 11234567778888753 2222 239999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|+.+|++|+|||||+|||+.+++.+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |+++..|+++
T Consensus 162 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 232 (252)
T PRK14256 162 TIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GDLVECGETK 232 (252)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999999999975 689999999987 56788999999986 9999998753
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=267.89 Aligned_cols=188 Identities=23% Similarity=0.336 Sum_probs=157.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchh-hhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQE-TFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~-~~~~~igy 97 (531)
++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ ..|++.++|.+.... ..++.++|
T Consensus 1 i~i~~l~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~~~~~~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFG--SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDATRVHARDRKIGF 76 (237)
T ss_pred CEEEEEEEEEC--CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCChhhcCEEE
Confidence 36788888885 356889988888877 99999999999998653 468999999765321 23567999
Q ss_pred EecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
++|++.+++..|+.|+.. ...+.+++.++.+++.+..++.. |||||++||++|+.+|++++|||
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDE 156 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999888899988721 11234677888999877666654 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 157 P~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 157 PFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 99999999999999999998876 899999999986 56788999999986 999998875
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=252.49 Aligned_cols=172 Identities=21% Similarity=0.261 Sum_probs=144.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc-------------h---hhhcceEEEEecCCCCCCCCcH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-------------Q---ETFARILGYCEQNDIHSPHDTL 110 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-------------~---~~~~~~igyv~Q~~~~~~~ltv 110 (531)
||--.+|.+||||||+||||.-+..+ ..|.|.++|..+. . ..+|.+.|+|+|+.+++.++||
T Consensus 33 dVisIIGsSGSGKSTfLRCiN~LE~P--~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtv 110 (256)
T COG4598 33 DVISIIGSSGSGKSTFLRCINFLEKP--SAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTV 110 (256)
T ss_pred CEEEEecCCCCchhHHHHHHHhhcCC--CCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHH
Confidence 44445566699999999999986543 3578888875421 1 2345679999999999999999
Q ss_pred HhH------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 042733 111 YDF------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATT 173 (531)
Q Consensus 111 ~e~------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~ 173 (531)
.|+ +.+..++.+..+..+|+.+.++... ||+||++|||||+.+|+++++|||||.|||.-.-+
T Consensus 111 LeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgE 190 (256)
T COG4598 111 LENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGE 190 (256)
T ss_pred HHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHH
Confidence 998 3444566788899999998888665 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 174 VIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 174 i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++.+++++++|+|.+++||.+.. ..+...+|+.|.+ |++-..|+|+
T Consensus 191 VLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P~ 237 (256)
T COG4598 191 VLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPPE 237 (256)
T ss_pred HHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCChH
Confidence 999999999999999999999864 4557789999996 9999999985
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=270.01 Aligned_cols=194 Identities=19% Similarity=0.188 Sum_probs=157.0
Q ss_pred cccceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C-ceEEEEEEEcCcccc--
Q 042733 22 LFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G-GYITRNITVSGYPEK-- 87 (531)
Q Consensus 22 ~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~-g~~~G~i~~~g~~~~-- 87 (531)
|.....++++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+ + .+.+|+|.++|.+..
T Consensus 8 ~~~~~~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~ 85 (260)
T PRK10744 8 ATAPSKIQVRNLNFYYG--KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP 85 (260)
T ss_pred cCCCceEEEEEEEEEeC--CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccc
Confidence 44456789999999995 356999999888877 9999999999999753 1 125799999997652
Q ss_pred ---hhhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc----hhhhcc-----HHHHHH
Q 042733 88 ---QETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELN----PFRQAL-----FEQRKR 143 (531)
Q Consensus 88 ---~~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~----~~~~~~-----~GerqR 143 (531)
...+++.++|++|++.+++ .|++++.. ....++++.++.+++. +..++. .|||||
T Consensus 86 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 164 (260)
T PRK10744 86 KQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQR 164 (260)
T ss_pred ccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHH
Confidence 1235678999999988777 79988721 1124567788888873 223333 399999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++||++|+.+|++|+|||||+|||+.+++.+.+.|++++ ++.|||++||+++ ++.+.+|++++|++ |+++..|++
T Consensus 165 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 239 (260)
T PRK10744 165 LCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAFMYL-GELIEFGNT 239 (260)
T ss_pred HHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999996 4789999999986 46778999999986 999998875
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=265.60 Aligned_cols=186 Identities=20% Similarity=0.231 Sum_probs=152.3
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchh-hhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQE-TFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~-~~~~~igy 97 (531)
++++||+++|+. . ..++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+.... ..++.++|
T Consensus 2 l~~~~l~~~~~~--~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHH--L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHTTTPPSRRPVSM 75 (232)
T ss_pred eEEEEEEEEECC--c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeecCcCChhhccEEE
Confidence 567777777742 1 12666666655 99999999999998653 468999999865321 22457999
Q ss_pred EecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
++|++.+++.+|+.|+.. .....+++.++.+++.+..++.+ |||||++||++++.+|++++|||
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 155 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDE 155 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999999899998721 12345778899999987777665 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+|||+.+++.+.+.|++++++ |+|+|++||+++ ++.+.||++++|++ |++++.|++
T Consensus 156 P~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 156 PFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999998764 899999999987 56788999999986 999998875
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=278.05 Aligned_cols=194 Identities=12% Similarity=0.199 Sum_probs=155.1
Q ss_pred EEEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCC--ceEEEEEEEcCcccch---hh
Q 042733 27 YISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG--GYITRNITVSGYPEKQ---ET 90 (531)
Q Consensus 27 ~l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~--g~~~G~i~~~g~~~~~---~~ 90 (531)
.|+++||++.|+.+ ...+|+|||+.+.+| |||||||+|+|+|..+. ...+|+|.++|.+... ..
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 46888888888532 235888888887777 99999999999997542 1357999999976421 11
Q ss_pred ----hcceEEEEecCCC--CCCCCcHHhHHH-----------------HHHHHHHHHHHhcCCchh---hhcc-----HH
Q 042733 91 ----FARILGYCEQNDI--HSPHDTLYDFTH-----------------CLYMFIEEGMELVELNPF---RQAL-----FE 139 (531)
Q Consensus 91 ----~~~~igyv~Q~~~--~~~~ltv~e~~~-----------------~~~~~~~~~l~~l~l~~~---~~~~-----~G 139 (531)
.++.++|++|++. +.|.+|+.++.. .....+.+.++.+||.+. .++. .|
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG 162 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEG 162 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHH
Confidence 2357999999975 567888876521 112456788999999742 3333 39
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeec
Q 042733 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISV 218 (531)
Q Consensus 140 erqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~ 218 (531)
|||||+||+||+.+|++|++||||+|||+.++.+++++|++++++ |.|||++|||++ .+.+.||++++|++ |+++..
T Consensus 163 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~-G~ive~ 240 (330)
T PRK15093 163 ECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYC-GQTVET 240 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999875 999999999987 57788999999996 999999
Q ss_pred CCCC
Q 042733 219 GPLG 222 (531)
Q Consensus 219 G~~~ 222 (531)
|+.+
T Consensus 241 g~~~ 244 (330)
T PRK15093 241 APSK 244 (330)
T ss_pred CCHH
Confidence 9863
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-32 Score=268.97 Aligned_cols=191 Identities=17% Similarity=0.206 Sum_probs=152.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc---eEEEEEEEcCcccc-----hh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG---YITRNITVSGYPEK-----QE 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g---~~~G~i~~~g~~~~-----~~ 89 (531)
.++++|++++|+ .+.+|+++|+.+.+| |||||||+|+|+|..++. +.+|+|.++|.+.. ..
T Consensus 4 ~l~i~~v~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYG--SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEEC--CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 467888888874 346788888777776 999999999999975421 24799999997642 12
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc----hhhhcc-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELN----PFRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv~iA~ 148 (531)
..++.++|++|++.+++.+|++|+.. ...+.+++.++.+++. +..++. .||||||+|||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIAR 161 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 35677999999998999999998721 1123456678888873 233333 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc-----cCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK-----QVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~-----~~G~~v~~G~~ 221 (531)
+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|+ ++|++++.|++
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 162 AIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDT 237 (258)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCH
Confidence 99999999999999999999999999999999964 689999999987 5678899999996 24899999875
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=271.21 Aligned_cols=191 Identities=18% Similarity=0.263 Sum_probs=152.3
Q ss_pred EEEEEeEEEEEeCC-------CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--
Q 042733 27 YISLNEIVYSVDMP-------QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-- 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~-------~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-- 88 (531)
.|+++||+++|+.+ .+++|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPLHFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCCCc
Confidence 47788888888421 235888888777766 99999999999998653 46899999976532
Q ss_pred -hhhcceEEEEecCCC--CCCCCcHHhHHH------------HHHHHHHHHHHhcCCc-hhhhcc-----HHHHHHHHHH
Q 042733 89 -ETFARILGYCEQNDI--HSPHDTLYDFTH------------CLYMFIEEGMELVELN-PFRQAL-----FEQRKRLTVA 147 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~--~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~-~~~~~~-----~GerqRv~iA 147 (531)
...++.++|++|++. +.+.+|+.++.. ...+.+++.++.+++. +..+.. .||||||+||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 223457999999874 567778776511 1223567789999994 444444 3999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++...||++++|++ |+++..|++
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 234 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVVERGST 234 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 9999999999999999999999999999999999875 899999999987 57778999999986 999988875
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-32 Score=270.13 Aligned_cols=196 Identities=17% Similarity=0.183 Sum_probs=159.0
Q ss_pred cccccceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccc
Q 042733 20 VLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEK 87 (531)
Q Consensus 20 ~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~ 87 (531)
.+|.....|+++|++++|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ ...+|+|.++|.+..
T Consensus 13 ~~~~~~~~l~~~nl~~~~~--~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 13 TFPEEEIALSTKDLHVYYG--KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred ecCCCCeEEEEeeEEEEEC--CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 3445566899999999995 467999999999888 99999999999997542 135799999997653
Q ss_pred h-----hhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhcc-----HHHH
Q 042733 88 Q-----ETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQAL-----FEQR 141 (531)
Q Consensus 88 ~-----~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~~-----~Ger 141 (531)
. ...++.++|++|++.+++ .|++|+.. .....+.+.++.+++.+ ..++. .|||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 91 RKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQ 169 (267)
T ss_pred cccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHH
Confidence 1 234667999999988776 69998721 11234566778887742 23333 3999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 142 KRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 142 qRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ ++.|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 246 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFYL-GDLIEYDKT 246 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999999999985 4789999999987 57788999999986 999999985
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-32 Score=270.23 Aligned_cols=191 Identities=19% Similarity=0.207 Sum_probs=155.8
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ---- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~---- 88 (531)
...|+++|++++|+ ++.+|+|+|+.+.|| |||||||+|+|+|..++ ...+|+|.++|.+...
T Consensus 17 ~~~l~~~nl~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYG--EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEEC--CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 44789999999995 457999999999888 99999999999997542 1257999999976531
Q ss_pred -hhhcceEEEEecCCCCCCCCcHHhHHH-------------HHHHHHHHHHHhcCCch----hhhcc-----HHHHHHHH
Q 042733 89 -ETFARILGYCEQNDIHSPHDTLYDFTH-------------CLYMFIEEGMELVELNP----FRQAL-----FEQRKRLT 145 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~~~~~ltv~e~~~-------------~~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~ 145 (531)
..+++.++|++|++.+++. |+.|+.. .....+++.++.+++.+ ..++. .|||||++
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 173 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLC 173 (267)
T ss_pred hHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 2356779999999887774 9988721 11234567788888853 22332 39999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+...||++++|++ |+++..|++
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 246 (267)
T PRK14235 174 IARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHL-GNLVEVGDT 246 (267)
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999999865 789999999987 46778999999986 999998874
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=253.31 Aligned_cols=190 Identities=24% Similarity=0.332 Sum_probs=161.5
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~i 95 (531)
|+.+|+||+.. .+.+|+++|+++.|| |||||||||.|+|...+ .+|++.++|.+... ....+..
T Consensus 2 i~a~nls~~~~--Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~~~~~~~lA~~r 77 (259)
T COG4559 2 IRAENLSYSLA--GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLNSWPPEELARHR 77 (259)
T ss_pred eeeeeeEEEee--cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChhhCCHHHHHHHh
Confidence 68899999885 577899888766655 99999999999996543 35899999987643 3455667
Q ss_pred EEEecCCCCCCCCcHHhH-------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh-----
Q 042733 96 GYCEQNDIHSPHDTLYDF-------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA----- 152 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~-------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~----- 152 (531)
+.+||+..+.+..||+|. ..+.....++.|...++.+++.+.+ ||||||.+||.|++
T Consensus 78 aVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v 157 (259)
T COG4559 78 AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPV 157 (259)
T ss_pred hhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCC
Confidence 999999998888999987 1234455788899999988877765 99999999999985
Q ss_pred -CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 153 -NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 153 -~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
++++|+||||||.||...+..++++.++++++|..|+++.||.+. ...+|||+++|.+ ||++..|++.+
T Consensus 158 ~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Grv~a~g~p~~ 227 (259)
T COG4559 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GRVIASGSPQD 227 (259)
T ss_pred CCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-CeEeecCCHHH
Confidence 456999999999999999999999999999999999999999986 5678999999996 99999999865
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-32 Score=277.13 Aligned_cols=195 Identities=15% Similarity=0.257 Sum_probs=157.8
Q ss_pred eEEEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-eEEEEEEEcCcccch---hh
Q 042733 26 HYISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG-YITRNITVSGYPEKQ---ET 90 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g-~~~G~i~~~g~~~~~---~~ 90 (531)
..|+++||++.|... ...+|+|||+.+.+| |||||||+++|+|..++. ..+|+|.++|.+... ..
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 468999999998532 236899999888888 999999999999976531 237999999987532 11
Q ss_pred ---hc-ceEEEEecCC--CCCCCCcHHhHH------------HHHHHHHHHHHHhcCCchhh---hcc-----HHHHHHH
Q 042733 91 ---FA-RILGYCEQND--IHSPHDTLYDFT------------HCLYMFIEEGMELVELNPFR---QAL-----FEQRKRL 144 (531)
Q Consensus 91 ---~~-~~igyv~Q~~--~~~~~ltv~e~~------------~~~~~~~~~~l~~l~l~~~~---~~~-----~GerqRv 144 (531)
++ +.++|++|++ .+.|.+|+.++. .+...++.+.++.+++.+.. +.. .||||||
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv 170 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRV 170 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHH
Confidence 22 4799999997 578889987741 11234567788888886422 222 3999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+||+||+.+|++||+||||+|||+.++..++++|++++++ |.|+|++|||++ .+.+.+|++++|++ |+++..|+++
T Consensus 171 ~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~-G~ive~g~~~ 247 (330)
T PRK09473 171 MIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA-GRTMEYGNAR 247 (330)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999999999875 999999999987 46678999999986 9999999864
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=267.38 Aligned_cols=189 Identities=15% Similarity=0.177 Sum_probs=152.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC-ceEEEEEEEcCcccch---hhhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG-GYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~-g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
.++++|+++.|+ .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+.+|+|.++|.+... ...++
T Consensus 2 ~~~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYG--KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEEC--CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 357888888885 346888888888777 99999999999997531 1347999999986532 23566
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-------------HHHHHHHHHHHhcCCch----hhhc-----cHHHHHHHHHHHHHh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-------------CLYMFIEEGMELVELNP----FRQA-----LFEQRKRLTVAVEFV 151 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-------------~~~~~~~~~l~~l~l~~----~~~~-----~~GerqRv~iA~aL~ 151 (531)
.++|++|++.+++ .|++|+.. ....++++.++.+++.+ ..+. +.|||||++|||+|+
T Consensus 80 ~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 158 (246)
T PRK14269 80 NVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158 (246)
T ss_pred hEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 7999999988876 69988721 11234567788888842 2233 339999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 159 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 225 (246)
T PRK14269 159 IKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFGES 225 (246)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999864 899999999987 47788999999996 999998875
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=282.24 Aligned_cols=187 Identities=17% Similarity=0.210 Sum_probs=156.9
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCc----ccc---hh---hh-cce
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGY----PEK---QE---TF-ARI 94 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~----~~~---~~---~~-~~~ 94 (531)
....++|+|+++.. ..+.+.+|+||||||||+|+|+|..++ .+|+|.++|. +.. .. .. ++.
T Consensus 36 ~~~~l~~vsf~i~~------Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 36 LVVGVANASLDIEE------GEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred CEEEEEeeEEEEcC------CCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 45578888888863 256788889999999999999998653 4689999985 221 11 12 257
Q ss_pred EEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
++|++|++.++|..||.|+.. ....++++.++.+|+.+..++.+ ||||||+|||||+.+|++|+
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILL 187 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILL 187 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999999821 22356788899999988777765 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||||+|||+.++.++.+.|++++++ |+|||++|||++ ++.+++|++++|++ |+++..|+++
T Consensus 188 lDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 188 MDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999875 999999999987 57789999999986 9999999874
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=268.74 Aligned_cols=192 Identities=19% Similarity=0.278 Sum_probs=154.2
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc--eEEEEEEEcCcccchhh-hc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG--YITRNITVSGYPEKQET-FA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g--~~~G~i~~~g~~~~~~~-~~ 92 (531)
|..++++|++++| ++.+|+++|+.+.+| |||||||+|+|+|..++. ..+|+|.++|.+..... .+
T Consensus 2 ~~~l~~~~l~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 78 (254)
T PRK10418 2 PQQIELRNIALQA---AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRG 78 (254)
T ss_pred CcEEEEeCeEEEe---ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccccccc
Confidence 3468899999988 246899999888877 999999999999976531 15789999998754322 23
Q ss_pred ceEEEEecCCC--CCCCCcHHhHHH---------HHHHHHHHHHHhcCCch---hhhcc-----HHHHHHHHHHHHHhhC
Q 042733 93 RILGYCEQNDI--HSPHDTLYDFTH---------CLYMFIEEGMELVELNP---FRQAL-----FEQRKRLTVAVEFVAN 153 (531)
Q Consensus 93 ~~igyv~Q~~~--~~~~ltv~e~~~---------~~~~~~~~~l~~l~l~~---~~~~~-----~GerqRv~iA~aL~~~ 153 (531)
+.++|++|++. +.+..|+.++.. .....+.+.++.+++.+ ..++. .||||||+|||||+.+
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~ 158 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCE 158 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcC
Confidence 57999999974 445567765521 11245677889999875 23333 3999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 225 (254)
T PRK10418 159 APFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH-GRIVEQGDV 225 (254)
T ss_pred CCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 9999999999999999999999999999764 899999999987 46678999999986 999998875
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=266.59 Aligned_cols=168 Identities=26% Similarity=0.327 Sum_probs=136.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEEEEe-cCCCCCCCCcHHhHHH---------
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILGYCE-QNDIHSPHDTLYDFTH--------- 115 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~igyv~-Q~~~~~~~ltv~e~~~--------- 115 (531)
+-+.+||||||||||+|+|+|..++ .+|+|.++|.+... ...++.++|++ |++.+++.+|++|+..
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~ 126 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLP 126 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCC
Confidence 3445555599999999999998653 47899999875321 23456799997 5566778899988721
Q ss_pred --HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCe
Q 042733 116 --CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRT 187 (531)
Q Consensus 116 --~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~t 187 (531)
.....+++.++.+++.+..++.+ |||||++||++|+.+|++++|||||+|||+.+++.+.+.|++++++ |+|
T Consensus 127 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 206 (236)
T cd03267 127 PARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTT 206 (236)
T ss_pred HHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCE
Confidence 11234567788889987766655 9999999999999999999999999999999999999999999765 899
Q ss_pred EEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 188 VVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 188 vi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
||++||+++ ++.+.||++++|.+ |++++.|
T Consensus 207 iiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 207 VLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred EEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999987 56788999999986 8988764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-32 Score=271.63 Aligned_cols=191 Identities=21% Similarity=0.283 Sum_probs=157.9
Q ss_pred EEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 27 YISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
.|+++|++++|+.. ...+|+++|+.+.+| |||||||+++|+|..++ .+|+|.++|.+... ...++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i~~~~~~~~~~ 81 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELLTAENVWNLRR 81 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEECCcCCHHHHhc
Confidence 57899999998632 235899999888887 99999999999998653 46899999976532 24567
Q ss_pred eEEEEecCCC-CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 94 ILGYCEQNDI-HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 94 ~igyv~Q~~~-~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
.+||++|++. .++..|+.|+.. ...++++++++.+++.+..++.+ |||||++|||+|+.+|++
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l 161 (277)
T PRK13642 82 KIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI 161 (277)
T ss_pred ceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 8999999974 567789988721 11235677889999987766654 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+|||||+|||+.++..+.+.|++++++ |.|||++||+++. +. .+|++++|++ |+++..|+++
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~~-G~i~~~g~~~ 225 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMKA-GEIIKEAAPS 225 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999875 9999999999874 44 6999999996 9999998753
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-32 Score=271.40 Aligned_cols=191 Identities=21% Similarity=0.269 Sum_probs=155.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc------eEEEEEEEcCcccc---hh
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG------YITRNITVSGYPEK---QE 89 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g------~~~G~i~~~g~~~~---~~ 89 (531)
|+++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++. ..+|+|.++|.+.. ..
T Consensus 2 l~~~nl~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARR--HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEEC--CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 67888888884 356888888777777 999999999999975431 12799999997653 22
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH---------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH---------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVE 149 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~a 149 (531)
..++.++|++|++..++..|++|+.. .....+++.++.+++.+..++.+ ||||||+||++
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 159 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARV 159 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 34566899999987666789988721 12235677888999987666554 99999999999
Q ss_pred Hh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 150 FV---------ANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 150 L~---------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|
T Consensus 160 l~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~-G~i~~~g 237 (272)
T PRK13547 160 LAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLAD-GAIVAHG 237 (272)
T ss_pred HhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEEec
Confidence 99 599999999999999999999999999999876 899999999987 57778999999986 9999998
Q ss_pred CCC
Q 042733 220 PLG 222 (531)
Q Consensus 220 ~~~ 222 (531)
+++
T Consensus 238 ~~~ 240 (272)
T PRK13547 238 APA 240 (272)
T ss_pred CHH
Confidence 864
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-32 Score=261.32 Aligned_cols=177 Identities=21% Similarity=0.323 Sum_probs=146.0
Q ss_pred eEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhhcceEEEEecCCCC
Q 042733 32 EIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETFARILGYCEQNDIH 104 (531)
Q Consensus 32 ~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~~~~igyv~Q~~~~ 104 (531)
|+++++.. ++.+.+||||||||||+|+|+|..++ .+|++.++|.+... ...++.++|++|++.+
T Consensus 16 ~vsl~i~~-------e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (214)
T cd03297 16 KIDFDLNE-------EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYAL 86 (214)
T ss_pred CceEEEcc-------eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCcc
Confidence 66666531 46788899999999999999998653 46899999876421 1245679999999988
Q ss_pred CCCCcHHhHHH---------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 042733 105 SPHDTLYDFTH---------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARA 170 (531)
Q Consensus 105 ~~~ltv~e~~~---------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~ 170 (531)
++.+|+.++.. .....+.+.++.+++.+..++.+ |||||++||++|+.+|++++|||||+|||+.+
T Consensus 87 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 166 (214)
T cd03297 87 FPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRAL 166 (214)
T ss_pred CCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 88999988721 12345677899999987666554 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 171 ATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 171 ~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
++.+.+.|++++++ |+|||++||+++ ++...||++++|++ |+++..|
T Consensus 167 ~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 167 RLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred HHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999875 899999999986 46778999999986 9988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-32 Score=294.29 Aligned_cols=191 Identities=16% Similarity=0.227 Sum_probs=161.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~ 93 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... .. .++
T Consensus 11 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 11 LLCARSISKQYS--GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred eEEEEeEEEEeC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHhC
Confidence 588999999885 356889888887777 99999999999998653 46899999976432 12 234
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
.+||++|++.+++.+||.|+.. ...+++++.++.+++.+..++.+ ||||||+||++|+.+|++|+|||
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE 166 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE 166 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 6999999999999999999721 22456788899999987666655 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|++ |++++.|++++
T Consensus 167 Pt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~~ 226 (510)
T PRK15439 167 PTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALSGKTAD 226 (510)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecChHH
Confidence 99999999999999999999888999999999987 46788999999986 99999998753
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-32 Score=270.07 Aligned_cols=192 Identities=18% Similarity=0.206 Sum_probs=153.9
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccc-----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEK----- 87 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~----- 87 (531)
+..|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+. .+.+|++.++|.+..
T Consensus 11 ~~~l~i~nl~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 11 NIIISLQNVTISYG--TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CceEEEEeEEEEEC--CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 45799999999995 357999999888877 99999999999997541 125799999997642
Q ss_pred hhhhcceEEEEecCCCCCCCCcHHhHHH----------HHHHHHHHHHHhcCCc----hhhhcc-----HHHHHHHHHHH
Q 042733 88 QETFARILGYCEQNDIHSPHDTLYDFTH----------CLYMFIEEGMELVELN----PFRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 88 ~~~~~~~igyv~Q~~~~~~~ltv~e~~~----------~~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv~iA~ 148 (531)
...+++.++|++|++.+++ .|++|+.. ...+.+++.++.+++. +..++. .|||||++|||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lar 167 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIAR 167 (269)
T ss_pred HHHHhhceEEEccCCccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHH
Confidence 2345667999999988887 49998722 1123455667777653 333433 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc----------Cceeeec
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ----------VGQEISV 218 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~----------~G~~v~~ 218 (531)
+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.||++++|++ .|++++.
T Consensus 168 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~ 245 (269)
T PRK14259 168 TIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEF 245 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEe
Confidence 99999999999999999999999999999999854 789999999987 57789999999984 2567888
Q ss_pred CCC
Q 042733 219 GPL 221 (531)
Q Consensus 219 G~~ 221 (531)
|++
T Consensus 246 ~~~ 248 (269)
T PRK14259 246 NET 248 (269)
T ss_pred CCH
Confidence 875
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-32 Score=280.60 Aligned_cols=172 Identities=20% Similarity=0.343 Sum_probs=145.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhhcceEEEEecCCCCCCCCcHHhHHH----
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETFARILGYCEQNDIHSPHDTLYDFTH---- 115 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~~~~igyv~Q~~~~~~~ltv~e~~~---- 115 (531)
++.+.+||||||||||||+|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||+|+..
T Consensus 24 ei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 101 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMK 101 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhh
Confidence 45566667799999999999998653 46899999976431 134567999999999999999999832
Q ss_pred -----HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 042733 116 -----CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM- 184 (531)
Q Consensus 116 -----~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~- 184 (531)
....++++.++.+++.+..++.+ ||||||+|||||+.+|++|+|||||+|||+.+++.+.+.|++++++
T Consensus 102 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~ 181 (354)
T TIGR02142 102 RARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181 (354)
T ss_pred ccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence 12345788899999988777655 9999999999999999999999999999999999999999999875
Q ss_pred CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 185 GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 185 g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+|+|++||+++ ++...+|++++|++ |+++..|+++
T Consensus 182 g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 217 (354)
T TIGR02142 182 GIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPIA 217 (354)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCHH
Confidence 899999999987 57788999999986 9999998763
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=264.11 Aligned_cols=186 Identities=23% Similarity=0.304 Sum_probs=151.9
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEEE
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGYC 98 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv 98 (531)
+++|+++.|+. ++|+|+|+.+.|| |||||||+++|+|..++ ..|++.++|.+... ...++.++|+
T Consensus 2 ~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~g~~~~~~~~~~~~i~~~ 76 (235)
T cd03299 2 KVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDITNLPPEKRDISYV 76 (235)
T ss_pred eeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcCcCChhHcCEEEE
Confidence 46667766642 2577777666665 99999999999997653 46999999976532 1235679999
Q ss_pred ecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 99 EQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
+|++.+++..|+.|+.. .....+.+.++.+++.+..++.+ |||||++||++++.+|++++||||
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 156 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEP 156 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 99998898999988721 12234567888999987766655 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 163 ISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.||++++|++ |+++..|+.
T Consensus 157 t~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 157 FSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 9999999999999999998765 999999999986 46778999999986 999998875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=265.91 Aligned_cols=191 Identities=18% Similarity=0.166 Sum_probs=153.6
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch-----
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ----- 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~----- 88 (531)
+.++++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ ...+|+|.++|.+...
T Consensus 3 ~~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 3 IKMESKNLNLWYG--EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred cEEEEEEeEEEEC--CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4578899998885 356889888888877 99999999999997532 1246999999976531
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc----hhhhcc-----HHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELN----PFRQAL-----FEQRKRLTVA 147 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv~iA 147 (531)
...++.++|++|++.+++ .|++|+.. ....++++.++.+++. +..++. .|||||++||
T Consensus 81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 159 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIA 159 (251)
T ss_pred HHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 234667999999988877 89998721 1123456678888763 223333 3999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |+++..|+++
T Consensus 160 ral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 231 (251)
T PRK14270 160 RTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLM-GDLIEFNKTE 231 (251)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEEC-CeEEEeCCHH
Confidence 999999999999999999999999999999999876 689999999986 57788999999986 9999998753
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=265.73 Aligned_cols=189 Identities=21% Similarity=0.213 Sum_probs=149.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C-ceEEEEEEEcCcccc-----hh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G-GYITRNITVSGYPEK-----QE 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~-g~~~G~i~~~g~~~~-----~~ 89 (531)
.++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..+ + ...+|+|.++|.+.. ..
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYN--KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEEC--CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 467888888874 346788888777776 9999999999999632 2 124689999997642 12
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA~ 148 (531)
.+++.++|++|++.+++ .|+.|+.. .....+.+.++.+++.+ ..++. .|||||++||+
T Consensus 83 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIAR 161 (252)
T ss_pred hhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHH
Confidence 34667999999988776 89998721 11233455677777632 22333 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 231 (252)
T PRK14239 162 VLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLD-GDLIEYNDT 231 (252)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999865 689999999987 57788999999996 999999875
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=268.06 Aligned_cols=206 Identities=17% Similarity=0.239 Sum_probs=159.8
Q ss_pred CchhhhhhhcccCCCccccccceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C
Q 042733 4 MTEAAIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G 72 (531)
Q Consensus 4 m~~~~i~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~ 72 (531)
|-+.-+++++....+ ...++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..+ +
T Consensus 4 ~~~~~~~~~~~~~~~------~~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 75 (268)
T PRK14248 4 MVREKIEIAPFPEAK------EHILEVKDLSIYYG--EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIP 75 (268)
T ss_pred HHhhHhhcccCCCCC------CceEEEEEEEEEeC--CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccC
Confidence 444445555544322 23589999999995 467999999888887 9999999999999632 1
Q ss_pred -ceEEEEEEEcCcccch-----hhhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc---
Q 042733 73 -GYITRNITVSGYPEKQ-----ETFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELN--- 131 (531)
Q Consensus 73 -g~~~G~i~~~g~~~~~-----~~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~--- 131 (531)
...+|+|.++|.+... ...++.++|++|++.+++. |+.|+.. .....+.+.++.+++.
T Consensus 76 ~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 154 (268)
T PRK14248 76 SARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV 154 (268)
T ss_pred CCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch
Confidence 1246899999976531 2346679999999888774 9888621 1123355667777763
Q ss_pred -hhhhcc-----HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCe
Q 042733 132 -PFRQAL-----FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 132 -~~~~~~-----~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~ 205 (531)
+..++. .|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||+
T Consensus 155 ~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~ 232 (268)
T PRK14248 155 KDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDR 232 (268)
T ss_pred HHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCE
Confidence 223333 3999999999999999999999999999999999999999999965 689999999986 47788999
Q ss_pred EEEEccCceeeecCCC
Q 042733 206 LFLLKQVGQEISVGPL 221 (531)
Q Consensus 206 v~lL~~~G~~v~~G~~ 221 (531)
+++|++ |++++.|++
T Consensus 233 v~~l~~-G~i~~~~~~ 247 (268)
T PRK14248 233 TAFFLN-GDLVEYDQT 247 (268)
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999986 999999875
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-32 Score=292.83 Aligned_cols=192 Identities=21% Similarity=0.277 Sum_probs=157.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~ 93 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 4 ~i~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~ 79 (501)
T PRK10762 4 LLQLKGIDKAFP--GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVTFNGPKSSQEA 79 (501)
T ss_pred eEEEeeeEEEeC--CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHHHhC
Confidence 367777777774 345777777666655 99999999999998653 46899999976421 11346
Q ss_pred eEEEEecCCCCCCCCcHHhHHH---------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH---------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~ 153 (531)
.++|++|++.+++.+||+|+.. ....++++.++.+++.+..++.+ ||||||+||+||+.+
T Consensus 80 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (501)
T PRK10762 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFE 159 (501)
T ss_pred CEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcC
Confidence 7999999998899999998621 11245678899999987666554 999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPS 224 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~ 224 (531)
|++|+|||||+|||+.++..+.+.|++++++|.|||++|||++ ++...||++++|++ |+++..|++++.
T Consensus 160 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~ 228 (501)
T PRK10762 160 SKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAEREVADL 228 (501)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEecCcCcC
Confidence 9999999999999999999999999999877999999999987 57788999999986 999999987653
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=269.56 Aligned_cols=191 Identities=22% Similarity=0.336 Sum_probs=152.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.++++|++++|+ +++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+......++.++|
T Consensus 6 ~l~~~~l~~~~~-~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~i~~ 82 (272)
T PRK15056 6 GIVVNDVTVTWR-NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPTRQALQKNLVAY 82 (272)
T ss_pred eEEEEeEEEEec-CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEhHHhhccceEEE
Confidence 578888888885 2346888888877766 99999999999998653 47999999986543222346999
Q ss_pred EecCCCCC--CCCcHHhHH---------------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCC
Q 042733 98 CEQNDIHS--PHDTLYDFT---------------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 98 v~Q~~~~~--~~ltv~e~~---------------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ 155 (531)
++|++.+. ...+++++. ......+++.++.+++.+..++.+ |||||++||++|+.+|+
T Consensus 83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ 162 (272)
T PRK15056 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQ 162 (272)
T ss_pred eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99986542 223455431 112345677889999987766655 99999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 156 IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+++|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++.+.||+++++ + |+++..|++++
T Consensus 163 llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g~~~~ 227 (272)
T PRK15056 163 VILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASGPTET 227 (272)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHh
Confidence 99999999999999999999999999877999999999986 577889999777 5 89999998753
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-32 Score=268.24 Aligned_cols=189 Identities=21% Similarity=0.259 Sum_probs=150.1
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcc-----cch---h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYP-----EKQ---E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~-----~~~---~ 89 (531)
.++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+ ... .
T Consensus 6 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 6 LLSVRGLTKLYG--PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred eEEEeeeEEEcC--CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccccccccccCCHH
Confidence 467778887774 346777777777766 99999999999997653 46899999976 321 1
Q ss_pred h----hcceEEEEecCCC--CCCCCcHHhHH------------HHHHHHHHHHHHhcCCch-hhhccH-----HHHHHHH
Q 042733 90 T----FARILGYCEQNDI--HSPHDTLYDFT------------HCLYMFIEEGMELVELNP-FRQALF-----EQRKRLT 145 (531)
Q Consensus 90 ~----~~~~igyv~Q~~~--~~~~ltv~e~~------------~~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~ 145 (531)
. .++.++|++|++. +.+.+|+.++. ......+.+.++.+++.+ ..++.+ |||||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~ 161 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQ 161 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHH
Confidence 1 2456999999973 56667776541 112345677889999863 444443 9999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.||++++|++ |++++.|++
T Consensus 162 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 162 IARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ-GRVVESGLT 236 (258)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999998765 899999999987 46678999999986 999999875
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.5e-32 Score=263.88 Aligned_cols=179 Identities=18% Similarity=0.244 Sum_probs=148.5
Q ss_pred EeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcH
Q 042733 31 NEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTL 110 (531)
Q Consensus 31 ~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv 110 (531)
+|+++++.. .++.+.+||||||||||+|+|+|..++ .+|+|.++|.+..... ...+|++|++.+++.+|+
T Consensus 2 ~~is~~i~~------Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv 71 (230)
T TIGR01184 2 KGVNLTIQQ------GEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTV 71 (230)
T ss_pred CceeEEEcC------CCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCC--hhheEEecCcccCCCCCH
Confidence 567777753 357889999999999999999998653 4689999997653221 124899999999999999
Q ss_pred HhHHHH-------------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 042733 111 YDFTHC-------------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAAT 172 (531)
Q Consensus 111 ~e~~~~-------------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~ 172 (531)
.|+... ....+++.++.+++.+..++.+ |||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 72 ~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 72 RENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 987211 1234677889999987666655 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 173 TVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 173 ~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
.+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 999999998865 899999999987 57788999999986 999988764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-31 Score=265.07 Aligned_cols=190 Identities=19% Similarity=0.228 Sum_probs=150.1
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc---eEEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG---YITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g---~~~G~i~~~g~~~~~-----~ 89 (531)
.++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++. ..+|+|.++|.+... .
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYG--DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEEC--CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 578888888885 356888888877777 999999999999975421 136999999976531 2
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCc----hhhhcc-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELN----PFRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv~iA~ 148 (531)
.+++.++|++|++.+++..|+.|+... ..+.+++.++.+++. +..++. .|||||++||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIAR 161 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHH
Confidence 346679999999999988999887321 112233444555542 223333 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.||++++|++ |++++.|++
T Consensus 162 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14272 162 ALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLV-GDLVEHGPT 231 (252)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999864 799999999987 57778999999986 999999875
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.5e-32 Score=293.90 Aligned_cols=191 Identities=22% Similarity=0.257 Sum_probs=156.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h-hhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E-TFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~-~~~~ 93 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... . ..++
T Consensus 5 ~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 5 YISMAGIGKSFG--PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINYNKLDHKLAAQL 80 (510)
T ss_pred eEEEeeeEEEcC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEECCCCCHHHHHHC
Confidence 467777777774 345677777666655 99999999999998653 46899999976532 1 1345
Q ss_pred eEEEEecCCCCCCCCcHHhHHH------------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHH
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH------------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEF 150 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~------------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL 150 (531)
.++|++|++.+++.+||+|+.. ....++++.++.+|+.+..++.+ ||||||+||++|
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al 160 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTL 160 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH
Confidence 6999999998889999988621 11245677899999987666655 999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...||++++|++ |++++.|++++
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~ 231 (510)
T PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GSSVCSGMVSD 231 (510)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEeeecchhh
Confidence 9999999999999999999999999999999888999999999987 56778999999986 99999998764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=266.72 Aligned_cols=189 Identities=19% Similarity=0.223 Sum_probs=152.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--Cc-eEEEEEEEcCcccc-----hh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--GG-YITRNITVSGYPEK-----QE 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~g-~~~G~i~~~g~~~~-----~~ 89 (531)
.|+++|+++.|+ .+.+|+++|+.+.+| |||||||+|+|+|..+ +. ..+|++.++|.+.. ..
T Consensus 12 ~l~i~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYG--QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEEC--CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 578999999885 356899999888877 9999999999999753 11 14799999998653 12
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA~ 148 (531)
..++.+||++|++.+++. |++|+.. .....+++.++.+++.+ ..++. .|||||++||+
T Consensus 90 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lar 168 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIAR 168 (259)
T ss_pred HHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 346779999999888775 9988721 11223556677877743 22332 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++.+.||++++|++ |+++..|++
T Consensus 169 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 238 (259)
T PRK14274 169 ALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GELVECNDT 238 (259)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999865 789999999987 57788999999986 999999875
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-31 Score=264.49 Aligned_cols=189 Identities=19% Similarity=0.239 Sum_probs=151.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C-ceEEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G-GYITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~-g~~~G~i~~~g~~~~~-----~ 89 (531)
.|+++|+++.|+ ++.+++|+|+.+.+| |||||||+|+|+|..+ + ...+|+|.++|.+... .
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 3 KISVKDLDLFYG--DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred eEEEEEEEEEEC--CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 468889998885 346888888888777 9999999999999643 1 1247999999976532 2
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc----hhhhcc-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELN----PFRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv~iA~ 148 (531)
..++.++|++|++.+++ .|+.++.. ...+.+++.++.+++. +..++. .|||||++|||
T Consensus 81 ~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 34667999999988777 89988721 1233456667777763 222332 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.||++++|++ |+++..|++
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (250)
T PRK14240 160 ALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLN-GEIVEFGDT 229 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999854 789999999986 57788999999996 999998874
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=268.07 Aligned_cols=193 Identities=21% Similarity=0.314 Sum_probs=155.1
Q ss_pred EEEEEeEEEEEeC-------CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--
Q 042733 27 YISLNEIVYSVDM-------PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-- 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~-------~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-- 88 (531)
.|+++||++.|+. .++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccccC
Confidence 3678888888752 1346888888877776 99999999999997653 47899999976432
Q ss_pred ----hhhcceEEEEecCC--CCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHH
Q 042733 89 ----ETFARILGYCEQND--IHSPHDTLYDFTH------------CLYMFIEEGMELVELN-PFRQALF-----EQRKRL 144 (531)
Q Consensus 89 ----~~~~~~igyv~Q~~--~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv 144 (531)
...++.++|++|++ .+.+..|+.++.. .....+++.++.+++. ...++.+ |||||+
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl 160 (268)
T PRK10419 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV 160 (268)
T ss_pred hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHH
Confidence 12466799999997 3566788877621 1223577889999986 4545543 999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++||+++ ++.+.||++++|++ |++++.|++++
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~~ 238 (268)
T PRK10419 161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-GQIVETQPVGD 238 (268)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-CEEeeeCChhh
Confidence 9999999999999999999999999999999999999875 899999999987 56778999999986 99999998653
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-32 Score=255.96 Aligned_cols=191 Identities=20% Similarity=0.247 Sum_probs=156.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~ 93 (531)
.++++||+..|+ +.++|++||+.+++| |||||||||+|+|..+. .+|+|.++|.++.. ...++
T Consensus 3 mL~v~~l~~~YG--~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 3 MLEVENLSAGYG--KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDITGLPPHERARL 78 (237)
T ss_pred ceeEEeEeeccc--ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecCCCCHHHHHhC
Confidence 468888888885 467888888877766 99999999999998763 36999999987643 34567
Q ss_pred eEEEEecCCCCCCCCcHHhHHH---------HHHH-HHHHHHHhcC-CchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH---------CLYM-FIEEGMELVE-LNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~---------~~~~-~~~~~l~~l~-l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
.++||||....||.+||+||-. .... ..+++.+.+- |.+.+++.. ||||.++|||||+.+|++|
T Consensus 79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL 158 (237)
T COG0410 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL 158 (237)
T ss_pred CeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence 8999999999999999999921 1111 1566666653 444455444 8999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+|||||.||-|.-.++|.+.+++++++ |.||+++.++.. ...+.+||.++|.. |++++.|+.++
T Consensus 159 LLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~~G~~~e 223 (237)
T COG0410 159 LLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVLSGTAAE 223 (237)
T ss_pred EecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEEecCHHH
Confidence 999999999999999999999999976 789999999876 46788999999986 99999998753
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-31 Score=266.59 Aligned_cols=192 Identities=20% Similarity=0.219 Sum_probs=156.2
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ---- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~---- 88 (531)
...|+++|++++|+ .+.+|+|+|+.+.+| |||||||+|+|+|..++ ...+|+|.++|.+...
T Consensus 19 ~~~l~i~nl~~~~~--~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 19 APAMAAVNLTLGFA--GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred CcEEEEeeEEEEEC--CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 34689999999996 467999999998887 99999999999997542 1357999999976431
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCchh----hhc-----cHHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELNPF----RQA-----LFEQRKRLTVA 147 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~~~----~~~-----~~GerqRv~iA 147 (531)
..+++.++|++|++.+++ .|++++... ....+.+.++.+++.+. .++ +.|||||++||
T Consensus 97 ~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred HHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 235678999999988877 799986211 11234566788887542 222 23999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+|+.+|++++|||||+|||+.+++.+.+.|+++++ ++|||++||+++ ++.+.+|++++|++ |+++..|+++
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i~~~g~~~ 247 (276)
T PRK14271 176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRLVEEGPTE 247 (276)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999999999876 589999999987 57788999999996 9999998753
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=265.34 Aligned_cols=193 Identities=18% Similarity=0.297 Sum_probs=159.1
Q ss_pred EEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCC-C-c-eEEEEEEEcCccc---chh-
Q 042733 28 ISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP-G-G-YITRNITVSGYPE---KQE- 89 (531)
Q Consensus 28 l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~-~-g-~~~G~i~~~g~~~---~~~- 89 (531)
|+++||+.+|.... ..+++|||+.+++| ||||||+.++|.|..+ + + ..+|+|.++|.+. ++.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899998887543 36899999999988 9999999999999765 2 3 4578999999853 222
Q ss_pred --h-hcceEEEEecCC--CCCCCCcHHhHH-------------HHHHHHHHHHHHhcCCchhh---hccH-----HHHHH
Q 042733 90 --T-FARILGYCEQND--IHSPHDTLYDFT-------------HCLYMFIEEGMELVELNPFR---QALF-----EQRKR 143 (531)
Q Consensus 90 --~-~~~~igyv~Q~~--~~~~~ltv~e~~-------------~~~~~~~~~~l~~l~l~~~~---~~~~-----GerqR 143 (531)
. ..+.|++++|++ .+.|.+|+.+.. ++..+++.+.++.+|+.+-. +... |||||
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR 161 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR 161 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence 2 346899999996 467888886640 11234677889999997642 3333 99999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|.||.||+.+|++||.||||++||...+.+++++|+++++ .|.++|++|||+.. +.+.||||.+|.. |+++..|+.+
T Consensus 162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMYa-G~iVE~g~~~ 239 (316)
T COG0444 162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYA-GRIVEEGPVE 239 (316)
T ss_pred HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEEC-cEEEEeCCHH
Confidence 9999999999999999999999999999999999999997 59999999999984 7889999999996 9999999975
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-31 Score=259.72 Aligned_cols=183 Identities=21% Similarity=0.275 Sum_probs=150.5
Q ss_pred EEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hh
Q 042733 28 ISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~ 90 (531)
++++|+++.|+.+. +.+|+++|+.+.+| |||||||+++|+|..++ .+|+|.++|.+... ..
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~ 79 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQELYGASEKELVQ 79 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEhHhcCHhHHHH
Confidence 56788888875321 45888888777776 99999999999997653 47999999986532 13
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhC
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVAN 153 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~ 153 (531)
.++.++|++|++.+++..|+.|+.. .....+++.++.+++.+..++.+ |||||++||++|+.+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~ 159 (220)
T TIGR02982 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHR 159 (220)
T ss_pred HHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 4578999999998888899988621 11235778899999987766655 999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
|++++|||||+|||+.++..+.+.|+++++ +|+|||++||+++ +.+.||++++|++ |++
T Consensus 160 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 160 PKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 999999999999999999999999999986 4899999999985 4578999999986 775
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-31 Score=263.75 Aligned_cols=189 Identities=21% Similarity=0.264 Sum_probs=150.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~-----~ 89 (531)
.|+++|+++.|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ ...+|++.++|.+... .
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYG--EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeC--CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 467888888874 346788888777766 99999999999997542 1257999999976531 2
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhccH-----HHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQALF-----EQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~~~-----GerqRv~iA~ 148 (531)
..++.++|++|++.+++ .|++|+.. .....+++.++.+++.+ ..++.+ |||||++||+
T Consensus 81 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~ 159 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIAR 159 (250)
T ss_pred HhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHH
Confidence 34667999999988877 89988721 11223556677777743 233333 9999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+|++++|++ |+++..|++
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14262 160 ALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GELIEYGPT 229 (250)
T ss_pred HHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999865 789999999987 47788999999996 999998875
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-32 Score=322.80 Aligned_cols=192 Identities=23% Similarity=0.345 Sum_probs=166.5
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcce
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARI 94 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ 94 (531)
..|+++||+++|+.+++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEECcchHHHHhhh
Confidence 458999999999643457999999887776 99999999999998653 47999999987532 235677
Q ss_pred EEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
+||++|++.+++.+|++|+. +..++.+++.++.+++.+.+++.+ ||||||+||+||+.+|++++
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLL 2093 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVL 2093 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999972 112345678899999998887776 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||||+|||+.+++.+++.|++++++|+|||++||+++ ++..+|||+++|.+ |++++.|++
T Consensus 2094 LDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs~ 2154 (2272)
T TIGR01257 2094 LDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGTI 2154 (2272)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999888999999999987 67889999999996 999999986
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=251.81 Aligned_cols=162 Identities=24% Similarity=0.340 Sum_probs=136.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ig 96 (531)
++++|++++|+ .+.+|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++.++
T Consensus 1 l~~~~l~~~~~--~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYG--KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKKEPEEVKRRIG 76 (173)
T ss_pred CEEEEEEEEEC--CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcccchHhhhccEE
Confidence 36788888875 246888888888777 99999999999997653 46899999976532 23567799
Q ss_pred EEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 042733 97 YCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR 176 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~ 176 (531)
|++|++.+++..|+.|+.. .+.|||||++||++|+.+|++++|||||+|||+.++..+.+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~--------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 136 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK--------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWE 136 (173)
T ss_pred EEecCCccccCCcHHHHhh--------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 9999998888889987531 45599999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 177 MVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 177 ~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
.|++++++|.|+|++||+++ ++.+.+|++++|++ |++
T Consensus 137 ~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~-g~i 173 (173)
T cd03230 137 LLRELKKEGKTILLSSHILE-EAERLCDRVAILNN-GRI 173 (173)
T ss_pred HHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeC-CCC
Confidence 99999877899999999987 56778999999986 753
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-31 Score=266.44 Aligned_cols=190 Identities=18% Similarity=0.196 Sum_probs=154.9
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch-----
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ----- 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~----- 88 (531)
..++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+. ...+|++.++|.+...
T Consensus 24 ~~l~~~nl~~~~~--~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 24 TALEVRNLNLFYG--DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred cEEEEEEEEEEEC--CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 3689999999995 357999999998887 99999999999997542 1257999999976531
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVA 147 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA 147 (531)
..+++.++|++|++.+++. |+.|+... ....+++.++.+++.+ ..++. .|||||++||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 180 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIA 180 (272)
T ss_pred HHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHH
Confidence 2346789999999888875 99887211 1234566777777742 22333 3999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 181 ral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 251 (272)
T PRK14236 181 RAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-GKLVEYGDT 251 (272)
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999976 789999999986 46788999999986 999998875
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-31 Score=264.31 Aligned_cols=189 Identities=20% Similarity=0.194 Sum_probs=148.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc---eEEEEEEEcCcccc----hhh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG---YITRNITVSGYPEK----QET 90 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g---~~~G~i~~~g~~~~----~~~ 90 (531)
.++++|+++.|+ ++.+|+++|+.+.+| |||||||+|+|+|..++. ..+|++.++|.+.. ...
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYG--ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEEC--CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 467777777774 345777777776665 999999999999975421 24799999997642 124
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHHHH
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVAVE 149 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA~a 149 (531)
.++.++|++|++.+++ .|+.|+.. ...+.+.+.++.+++.+ ..++. .||||||+|||+
T Consensus 81 ~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 159 (249)
T PRK14253 81 LRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIART 159 (249)
T ss_pred HHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHH
Confidence 5677999999988887 79988721 11223455666777632 22332 399999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 160 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 228 (249)
T PRK14253 160 IAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GELVEHDDT 228 (249)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999999976 589999999987 57788999999996 999998875
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=259.12 Aligned_cols=180 Identities=22% Similarity=0.280 Sum_probs=151.3
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..++++|++++|+ ++.+++++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+......++.++
T Consensus 10 ~~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i~~~~~~~~i~ 85 (214)
T PRK13543 10 PLLAAHALAFSRN--EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTATRGDRSRFMA 85 (214)
T ss_pred ceEEEeeEEEecC--CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEccchhhhhceE
Confidence 4588999999885 356899999888877 99999999999998653 4699999998654333445699
Q ss_pred EEecCCCCCCCCcHHhHHHH--------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCC
Q 042733 97 YCEQNDIHSPHDTLYDFTHC--------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPI 163 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~~--------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPt 163 (531)
|++|++.+++.+|+.|+... ....+++.++.+++.+..++.+ |||||++||++++.+|++++|||||
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY 165 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999888888899987311 1234567888899877666655 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 164 SGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
+|||+.+++.+.+.|++++++|.|+|++||+++ ++.+.||++++++
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 166 ANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999888999999999987 5788999999886
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.8e-32 Score=300.15 Aligned_cols=196 Identities=24% Similarity=0.317 Sum_probs=159.0
Q ss_pred cccccceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---
Q 042733 20 VLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK--- 87 (531)
Q Consensus 20 ~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~--- 87 (531)
..+.-.-.++++|++|+|+..+..+|+|+|+.++|| |||||||+|+|+|+.++ ..|+|.+||.+..
T Consensus 464 ~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p--~~G~I~~dg~dl~~i~ 541 (709)
T COG2274 464 HLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRILLDGVDLNDID 541 (709)
T ss_pred cccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEeHHhcC
Confidence 333445679999999999866567999999999999 99999999999998663 5799999999864
Q ss_pred hhhhcceEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHH
Q 042733 88 QETFARILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTV 146 (531)
Q Consensus 88 ~~~~~~~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~i 146 (531)
...+|+.+|||+|++.++ +-|++|+-. ...+.+.++++..|..+... .+.|||||++|
T Consensus 542 ~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal 620 (709)
T COG2274 542 LASLRRQVGYVLQDPFLF-SGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL 620 (709)
T ss_pred HHHHHhheeEEcccchhh-cCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence 356899999999998765 578998821 11122333444444333222 23389999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||||+++|+||+||||||+||+.+.+.+.+.|+++. +|+|+|+++|.++ ..+.|||+++|++ |+++..|+.+
T Consensus 621 ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl~~-Gkiv~~gs~~ 692 (709)
T COG2274 621 ARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVLDQ-GKIVEQGSHE 692 (709)
T ss_pred HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEccC-CceeccCCHH
Confidence 999999999999999999999999999999999985 4799999999986 5788999999986 9999999863
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=257.88 Aligned_cols=173 Identities=22% Similarity=0.284 Sum_probs=139.3
Q ss_pred EeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---h----hhhcce
Q 042733 31 NEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---Q----ETFARI 94 (531)
Q Consensus 31 ~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~----~~~~~~ 94 (531)
+|+++.|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. . ...++.
T Consensus 2 ~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 2 KNISKKFG--DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred cceEEEEC--CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhC
Confidence 45666663 235666666666555 99999999999998653 4689999997632 1 124567
Q ss_pred EEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
++|++|++.+++..|++|+.. ...+.+++.++.+++.+..++.+ |||||++||++|+.+|++|+
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~lll 157 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLIL 157 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999999999888999998721 12345678899999987766665 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
|||||+|||+.++..+.+.|++++++|.|+|++||++. ..+.||++++|
T Consensus 158 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 158 ADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred EeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999999877999999999986 34679999864
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=264.02 Aligned_cols=187 Identities=21% Similarity=0.299 Sum_probs=143.1
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~i 95 (531)
++++|+++.|+...+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++.+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i 78 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLALADPAWLRRQV 78 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehHhcCHHHHhhcE
Confidence 3678888888533356888888777776 99999999999998653 46899999976432 2356779
Q ss_pred EEEecCCCCCCCCcHHhHHHH-----HHHHHHHH---------HHhc--CCchhh-----hccHHHHHHHHHHHHHhhCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTHC-----LYMFIEEG---------MELV--ELNPFR-----QALFEQRKRLTVAVEFVANP 154 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~-----~~~~~~~~---------l~~l--~l~~~~-----~~~~GerqRv~iA~aL~~~p 154 (531)
+|++|++.+++ .||.|+... ....+.+. ++.+ ++.... +.+.||||||+|||+|+.+|
T Consensus 79 ~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 157 (237)
T cd03252 79 GVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP 157 (237)
T ss_pred EEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC
Confidence 99999987664 699887211 01112222 2222 222222 22339999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++++|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++ ..||++++|++ |++++.|++
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (237)
T cd03252 158 RILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIVMEK-GRIVEQGSH 220 (237)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999999999999986 4899999999987 35 46999999996 999999875
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-31 Score=264.76 Aligned_cols=191 Identities=18% Similarity=0.212 Sum_probs=154.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-e--EEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG-Y--ITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g-~--~~G~i~~~g~~~~~-----~ 89 (531)
.++++|+++.|+ .+.+|+|+|+.+.+| |||||||+|+|+|..+.. . .+|++.++|.+... .
T Consensus 7 ~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 7 AIKVKDLSFYYN--TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred eEEEEEEEEEEC--CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 578999999985 356899999988887 999999999999975421 1 47999999976421 2
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc----hhhhcc-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELN----PFRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv~iA~ 148 (531)
..++.++|++|++.+++ .|++|+.. .....+++.++.+++. +..++. .|||||++|||
T Consensus 85 ~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 163 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIAR 163 (259)
T ss_pred hhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 34567999999988887 89998721 1123456677777763 233333 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc----CceeeecCCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ----VGQEISVGPLG 222 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~----~G~~v~~G~~~ 222 (531)
||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ +|+++..|+++
T Consensus 164 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 164 ALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTT 239 (259)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHH
Confidence 99999999999999999999999999999999865 689999999987 57789999999972 38999999863
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=260.84 Aligned_cols=185 Identities=25% Similarity=0.370 Sum_probs=148.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~i 95 (531)
++++|+++.|+...+.+|+|+|+.+.+| |||||||+++|+|..++ ..|++.++|.+... ...++.+
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEhHHCCHHHHHhhE
Confidence 6788999888533356889988888777 99999999999998653 46899999976422 2345679
Q ss_pred EEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhhc----------------cHHHHHHHHHHHHHhhCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQA----------------LFEQRKRLTVAVEFVANP 154 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~~----------------~~GerqRv~iA~aL~~~p 154 (531)
+|++|++.+++ .|+.|+.. .....+.+.++.+++.+..++ +.|||||++||++++.+|
T Consensus 81 ~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 81 GYVPQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEeCCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999988776 69988731 112345567777777665432 339999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ .. +.||++++|++ |++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~-g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDS-GRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeC-CeEeecC
Confidence 999999999999999999999999998764 89999999987 34 78999999986 8987654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-31 Score=261.75 Aligned_cols=189 Identities=21% Similarity=0.259 Sum_probs=151.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--Cc-eEEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--GG-YITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~g-~~~G~i~~~g~~~~~-----~ 89 (531)
.++++|++++|+ .+.+|+++|+.+.+| |||||||+|+|+|..+ +. ..+|+|.++|.+... .
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYG--NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEEC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 478899999885 356888888888877 9999999999999754 11 247999999976421 2
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCc----hhhhccH-----HHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELN----PFRQALF-----EQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~----~~~~~~~-----GerqRv~iA~ 148 (531)
..++.++|++|++.+++ .|++|+... ....+++.++.+++. ...+..+ |||||++|||
T Consensus 82 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lar 160 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIAR 160 (251)
T ss_pred HhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHH
Confidence 34667999999988775 799987211 123456677888873 2233333 9999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++++|||||+|||+.+++.+.+.|+++++ +.|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 161 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 230 (251)
T PRK14251 161 ALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMN-GDLIEAGPT 230 (251)
T ss_pred HHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999854 689999999987 46778999999986 999988875
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6e-31 Score=261.80 Aligned_cols=189 Identities=21% Similarity=0.221 Sum_probs=149.8
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~-----~ 89 (531)
.|+++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+. ...+|+|.++|.+... .
T Consensus 6 ~i~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYG--EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEEC--CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 578888888884 356888888777777 99999999999997431 1147999999976532 2
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA~ 148 (531)
..++.++|++|++.+++. ||+|+.. .....+.+.++.+++.+ ..++. .|||||++|||
T Consensus 84 ~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIAR 162 (253)
T ss_pred hhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHH
Confidence 345679999999888874 9988721 11234556677777632 22333 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++++|||||+|||+.+++.+.+.|+++++ ++|||++||+++ ++.+.+|++++|++ |+++..|++
T Consensus 163 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 232 (253)
T PRK14261 163 TLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GKLIEFDKT 232 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CEEEEcCCH
Confidence 99999999999999999999999999999999876 689999999986 46678999999986 999998875
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-31 Score=262.32 Aligned_cols=189 Identities=17% Similarity=0.202 Sum_probs=151.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C-ceEEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G-GYITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~-g~~~G~i~~~g~~~~~-----~ 89 (531)
.-+++|+++.|+ ++.+|+++|+.+.+| |||||||+|+|+|..+ + .+.+|+|.++|.+... .
T Consensus 5 ~~~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 5 HASVKNLNLWYG--SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEEeeeEEEEEC--CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 346788888884 356888888888777 9999999999999753 1 1257999999976422 1
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH-------------HHHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH-------------CLYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVA 147 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~-------------~~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA 147 (531)
..++.++|++|++.+++. |+.++.. .....+.+.++.+++.+ ..++. .|||||++||
T Consensus 83 ~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred HHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 346779999999887775 8887621 11234567788888854 22332 3999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (251)
T PRK14244 162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTT 232 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999985 4899999999987 56778999999996 999998875
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-31 Score=262.11 Aligned_cols=190 Identities=19% Similarity=0.229 Sum_probs=150.6
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C-ceEEEEEEEcCcccc-----h
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G-GYITRNITVSGYPEK-----Q 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~-g~~~G~i~~~g~~~~-----~ 88 (531)
..++++|+++.|+ ++.+|+++|+.+.+| |||||||+|+|+|..+ + ...+|+|.++|.+.. .
T Consensus 4 ~~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 4 KIITSSDVHLFYG--KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred ceEEEEeEEEEEC--CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4578999999985 356899999888777 9999999999999643 1 124799999997652 1
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCc----hhhhcc-----HHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELN----PFRQAL-----FEQRKRLTVA 147 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv~iA 147 (531)
...++.++|++|++.+++ .|+.++... ....+.+.++.+++. +..+.. .|||||++||
T Consensus 82 ~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~la 160 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIA 160 (252)
T ss_pred HHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHH
Confidence 234678999999988877 699887221 012344456666652 223332 3999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++||+++ .+.+.||++++|++ |+++..|++
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14255 161 RVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLT-GNLIEFADT 231 (252)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999976 589999999987 57788999999986 999998875
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=255.43 Aligned_cols=177 Identities=24% Similarity=0.284 Sum_probs=147.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ig 96 (531)
++++|+++.|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ..+++.++
T Consensus 1 l~i~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERD--GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDFQRDSIARGLL 76 (201)
T ss_pred CEEEEEEEEeC--CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccccHHhhhheE
Confidence 36788888874 346788888777776 99999999999998653 46899999876432 33567899
Q ss_pred EEecCCCCCCCCcHHhHHHH-----HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 042733 97 YCEQNDIHSPHDTLYDFTHC-----LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGL 166 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~~-----~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgL 166 (531)
|++|++.+++..|++|+... ..+.+++.++.+++.+..++.+ |||||++||++|+.+|++++|||||+||
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 99999888889999987321 2345778889999987666654 9999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 167 DARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 167 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
|+.+++.+.+.|++++++|.|+|++||++. +....|++++++
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999998878999999999986 567789999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=259.53 Aligned_cols=187 Identities=18% Similarity=0.250 Sum_probs=148.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++|++++|+...+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL--SSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhHhCCHHHHhhh
Confidence 36899999999643457999999888776 99999999999997653 46899999976432 345678
Q ss_pred EEEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhhCC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVANP 154 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~~p 154 (531)
++|++|++.+++ .|++|+.. .....+.+.++.+++.+..+ .+.|||||++|||+|+.+|
T Consensus 80 i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCcccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999988665 59988721 11233455566666654432 2239999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++. .||++++|++ |+++..|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~-g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TII-DSDRILVLDK-GRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HHh-hCCEEEEEEC-CeEEecCC
Confidence 99999999999999999999999999864 689999999986 344 5999999986 99988875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=262.68 Aligned_cols=189 Identities=22% Similarity=0.261 Sum_probs=150.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcc-----cch---h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYP-----EKQ---E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~-----~~~---~ 89 (531)
.|+++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+ ... .
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 78 (253)
T TIGR02323 3 LLQVSGLSKSYG--GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSGAELELYQLSEA 78 (253)
T ss_pred eEEEeeeEEEeC--CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEecccccccccccCCHH
Confidence 478888888885 346788888887776 99999999999998653 46899998865 321 1
Q ss_pred ----hhcceEEEEecCCC--CCCCCcHHhHHH------------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHH
Q 042733 90 ----TFARILGYCEQNDI--HSPHDTLYDFTH------------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLT 145 (531)
Q Consensus 90 ----~~~~~igyv~Q~~~--~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~ 145 (531)
..++.++|++|++. +.+..|+.++.. .....+++.++.+++. ...++.+ ||||||+
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~ 158 (253)
T TIGR02323 79 ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQ 158 (253)
T ss_pred HHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHH
Confidence 12356999999874 345566665421 1234567788999986 3555444 9999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.||++++|++ |+++..|++
T Consensus 159 laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 159 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ-GRVVESGLT 233 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999998764 899999999986 56678999999986 999998875
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=250.09 Aligned_cols=161 Identities=23% Similarity=0.358 Sum_probs=133.0
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~i 95 (531)
++++|++++|+..++.+++++|+.+.+| |||||||+++|+|..++ .+|++.++|.+.. ...+++.+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i 78 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLDGADISQWDPNELGDHV 78 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEEcccCCHHHHHhhe
Confidence 3577888887533345788888777776 99999999999997653 4689999997643 23456789
Q ss_pred EEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 042733 96 GYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVI 175 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~ 175 (531)
+|++|++.+++ .|++|+. .+.|||||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 79 ~~~~q~~~~~~-~tv~~~l---------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~ 136 (173)
T cd03246 79 GYLPQDDELFS-GSIAENI---------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALN 136 (173)
T ss_pred EEECCCCcccc-CcHHHHC---------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHH
Confidence 99999987776 4887642 4459999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 176 RMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 176 ~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
+.|++++++|+|+|++||+++ .+ +.||++++|++ |++
T Consensus 137 ~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~i 173 (173)
T cd03246 137 QAIAALKAAGATRIVIAHRPE-TL-ASADRILVLED-GRV 173 (173)
T ss_pred HHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEEC-CCC
Confidence 999999877999999999986 34 67999999986 763
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-31 Score=260.64 Aligned_cols=189 Identities=18% Similarity=0.199 Sum_probs=149.8
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc---eEEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG---YITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g---~~~G~i~~~g~~~~~-----~ 89 (531)
.++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++. ...|+|.++|.+... .
T Consensus 4 ~l~~~~l~~~~~--~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYH--KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEEC--CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 467888888885 346888888888777 999999999999975431 235899999976421 2
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA~ 148 (531)
.+++.++|++|++.+++. |++|+... ....+++.++.+++.+ ..++. .|||||++|||
T Consensus 82 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar 160 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIAR 160 (251)
T ss_pred HhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 356789999999988874 99887210 1233455566666532 23333 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++++|||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 230 (251)
T PRK14249 161 VLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GDLVEYGRT 230 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-CeEEEeCCH
Confidence 9999999999999999999999999999999985 5899999999987 56788999999986 999998875
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=266.05 Aligned_cols=191 Identities=17% Similarity=0.216 Sum_probs=153.4
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C-ceEEEEEEEcCcccch----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G-GYITRNITVSGYPEKQ---- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~-g~~~G~i~~~g~~~~~---- 88 (531)
...|+++|++++|+ .+.+|+|+|+.+.+| |||||||+|+|+|..+ + ...+|+|.++|.+...
T Consensus 37 ~~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYG--EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 34689999999995 356999999988887 9999999999999632 1 1247999999976421
Q ss_pred -hhhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCc----hhhhccH-----HHHHHHHH
Q 042733 89 -ETFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELN----PFRQALF-----EQRKRLTV 146 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~----~~~~~~~-----GerqRv~i 146 (531)
..+++.++|++|++.+++. |+.|+... ....+.+.++.+++. +..++.+ |||||++|
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L 193 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCV 193 (286)
T ss_pred hHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHH
Confidence 2346789999999888774 99887211 123455667777763 3333333 99999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ |+++..|++
T Consensus 194 AraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~-G~i~~~g~~ 265 (286)
T PRK14275 194 ARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYE-GVLVEHAPT 265 (286)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999999999865 689999999987 46778999999986 999998875
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-31 Score=263.98 Aligned_cols=191 Identities=17% Similarity=0.156 Sum_probs=151.7
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C-ceEEEEEEEcCcccc-----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G-GYITRNITVSGYPEK----- 87 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~-g~~~G~i~~~g~~~~----- 87 (531)
...++++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+ + ...+|+|.++|.+..
T Consensus 22 ~~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYG--EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEEC--CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 34689999999996 357999999999888 9999999999999753 1 125799999997652
Q ss_pred hhhhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCC----chhhhcc-----HHHHHHHHH
Q 042733 88 QETFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVEL----NPFRQAL-----FEQRKRLTV 146 (531)
Q Consensus 88 ~~~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l----~~~~~~~-----~GerqRv~i 146 (531)
....++.++|++|++.+++ .|+.|+... ....+.+.++.+++ .+..+.. .|||||++|
T Consensus 100 ~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~l 178 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCI 178 (271)
T ss_pred HHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHH
Confidence 1234667999999988776 499887210 01223444555532 2223333 399999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.||++++|++ |+++..|++
T Consensus 179 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~ 250 (271)
T PRK14238 179 ARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLN-GYVNEYDDT 250 (271)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999999999876 799999999987 46778999999986 999998875
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=254.38 Aligned_cols=177 Identities=20% Similarity=0.242 Sum_probs=144.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ig 96 (531)
++++|++++|+ .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.++
T Consensus 2 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~~~~~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERD--ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIRRQRDEYHQDLL 77 (204)
T ss_pred eEEEEEEEEEC--CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcccchHHhhhheE
Confidence 57788888885 346888888877776 99999999999998653 46899999976432 23556799
Q ss_pred EEecCCCCCCCCcHHhHHH--------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCC
Q 042733 97 YCEQNDIHSPHDTLYDFTH--------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPI 163 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~--------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPt 163 (531)
|++|++.+++.+|+.|+.. .....+++.++.+|+.+..++.+ |||||++||++|+++|++++|||||
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 157 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF 157 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9999998889999998821 12346778899999987766655 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 164 SGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
+|||+.++..+.+.|++++++|.|||++||+++ .+..+-+|++++
T Consensus 158 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 158 TAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 999999999999999999877899999999987 354544566655
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=274.19 Aligned_cols=167 Identities=25% Similarity=0.347 Sum_probs=143.8
Q ss_pred EcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEEEecCCCCCCCCcHHhHHH-----------HHHH
Q 042733 52 FRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGYCEQNDIHSPHDTLYDFTH-----------CLYM 119 (531)
Q Consensus 52 i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~ 119 (531)
+||||||||||||+|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||.|+.. ....
T Consensus 2 ~G~nGsGKSTLl~~iaGl~~p--~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 2 LGPSGCGKTTLLRLLAGFEQP--DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred cCCCCCCHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 689999999999999998653 47999999976532 223567999999999999999999821 1234
Q ss_pred HHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEec
Q 042733 120 FIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIH 193 (531)
Q Consensus 120 ~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H 193 (531)
++++.++.+++.+..++.+ ||||||+|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||
T Consensus 80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTH 159 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159 (325)
T ss_pred HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5778899999988777665 9999999999999999999999999999999999999999999865 899999999
Q ss_pred CCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 194 QPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 194 ~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++ ++...||++++|++ |+++..|+++
T Consensus 160 d~~-e~~~~~d~i~vl~~-G~i~~~g~~~ 186 (325)
T TIGR01187 160 DQE-EAMTMSDRIAIMRK-GKIAQIGTPE 186 (325)
T ss_pred CHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 987 57888999999986 9999999864
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=244.77 Aligned_cols=192 Identities=21% Similarity=0.290 Sum_probs=162.7
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
+.+.+++++.+|+.....+|+|+|+.+.+| |||||||||+++|..++ ..|.|.+||.++.... ..-|
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~gPg--aerg 77 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIEGPG--AERG 77 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEeccCCC--ccce
Confidence 356788899999765556999999888877 99999999999998764 4689999998765322 2348
Q ss_pred EEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
.|+|++.++|++|+.+| +.++...+.+.+..+||.+..++.+ ||||||.|||||+.+|++|+||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLD 157 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLD 157 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeec
Confidence 99999999999999998 4566677888999999998887776 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEcc-CceeeecCCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQ-VGQEISVGPLG 222 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~-~G~~v~~G~~~ 222 (531)
||++.||.-+++++.++|-++.+ .|+.++++||+.+ |..-+++++++|+. .||++..-+++
T Consensus 158 EPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 158 EPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999999999999999876 5999999999987 45557899999973 26787766653
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=258.91 Aligned_cols=189 Identities=21% Similarity=0.286 Sum_probs=151.7
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~ 92 (531)
+..|+++|+++.|+ ++++++|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+.. ....+
T Consensus 5 ~~~i~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~ 80 (225)
T PRK10247 5 SPLLQLQNVGYLAG--DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDISTLKPEIYR 80 (225)
T ss_pred CceEEEeccEEeeC--CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEcCcCCHHHHH
Confidence 34588999999885 456899999888777 99999999999997542 4689999997542 22346
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH---------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH---------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~---------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
+.++|++|++.+++ .|++|+.. .....+++.++.+++. ...++.+ |||||++||++|+.+|+++
T Consensus 81 ~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (225)
T PRK10247 81 QQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVL 159 (225)
T ss_pred hccEEEeccccccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 67999999988776 59998732 1123467788999985 3445444 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
+|||||+|||+.++..+.+.|++++++ |.|||++||+++. + ..||++++|++++..+..|.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhhh
Confidence 999999999999999999999998764 8999999999873 4 46999999964455566664
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-31 Score=261.92 Aligned_cols=192 Identities=19% Similarity=0.195 Sum_probs=154.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC-c--eEEEEEEEcCcccc-----hh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG-G--YITRNITVSGYPEK-----QE 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~-g--~~~G~i~~~g~~~~-----~~ 89 (531)
.|+++|++++|+ .+.+|+|+|+.+.+| |||||||+|+|+|..++ | ...|++.++|.+.. ..
T Consensus 7 ~l~~~nl~~~~~--~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 7 AIKVNNLSFYYD--TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred eEEEeeEEEEeC--CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 578999999985 346899999888877 99999999999997543 1 13689999997642 12
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhc-----cHHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQA-----LFEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~-----~~GerqRv~iA~ 148 (531)
..++.++|++|+..+++ .|+.|+.. .....+.+.++.+++.+ ..++ +.|||||++||+
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 163 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIAR 163 (261)
T ss_pred HhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 34677999999988877 89988721 11234566778887643 2233 239999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccC----ceeeecCCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQV----GQEISVGPLG 222 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~----G~~v~~G~~~ 222 (531)
+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.+.||++++|+++ |+++..|+++
T Consensus 164 al~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~ 241 (261)
T PRK14258 164 ALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTK 241 (261)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHH
Confidence 99999999999999999999999999999999875 4899999999987 578899999999842 8999998863
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=260.89 Aligned_cols=187 Identities=20% Similarity=0.250 Sum_probs=143.3
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~i 95 (531)
++++|++++|+..++.+++++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+.. ....++.+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i 78 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVRDYTLASLRRQI 78 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhhhCCHHHHHhhE
Confidence 3678888888533236888888777766 99999999999998653 4689999997643 22346679
Q ss_pred EEEecCCCCCCCCcHHhHHHH-----HHHH---------HHHHHHhc--CCchhhhc-----cHHHHHHHHHHHHHhhCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTHC-----LYMF---------IEEGMELV--ELNPFRQA-----LFEQRKRLTVAVEFVANP 154 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~-----~~~~---------~~~~l~~l--~l~~~~~~-----~~GerqRv~iA~aL~~~p 154 (531)
+|++|++.+++ .|++|+... .... .++.++.+ ++.+..+. +.|||||++||++|+.+|
T Consensus 79 ~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 157 (234)
T cd03251 79 GLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP 157 (234)
T ss_pred EEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999988775 699887210 0111 22333333 34333332 339999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++++|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++. .||++++|++ |+++..|++
T Consensus 158 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~v~~l~~-G~i~~~~~~ 220 (234)
T cd03251 158 PILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIE-NADRIVVLED-GKIVERGTH 220 (234)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHh-hCCEEEEecC-CeEeeeCCH
Confidence 99999999999999999999999999864 899999999987 454 4999999996 899988864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=287.05 Aligned_cols=192 Identities=21% Similarity=0.330 Sum_probs=155.9
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~~ 94 (531)
|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+++..+|+|.++|.+... ...++.
T Consensus 2 l~i~~l~~~~~--~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFG--GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeC--CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 57788888874 346788888777666 999999999999976532247999999976532 123457
Q ss_pred EEEEecCCCCCCCCcHHhHHH---------------HHHHHHHHHHHhcCCchhh-hcc-----HHHHHHHHHHHHHhhC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH---------------CLYMFIEEGMELVELNPFR-QAL-----FEQRKRLTVAVEFVAN 153 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~-~~~-----~GerqRv~iA~aL~~~ 153 (531)
+||++|++.+++.+|+.|+.. ....++++.++.+++.+.. ++. .||||||+||++|+.+
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~ 159 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ 159 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhC
Confidence 999999998889999988721 1123567788999987543 332 3999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+++.
T Consensus 160 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (500)
T TIGR02633 160 ARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVATKDMST 227 (500)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEeeecCccc
Confidence 9999999999999999999999999999888999999999987 57788999999986 99999988754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-31 Score=263.77 Aligned_cols=194 Identities=15% Similarity=0.176 Sum_probs=154.2
Q ss_pred cceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccc----
Q 042733 24 EPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEK---- 87 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~---- 87 (531)
.+..|+++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..+. ...+|+|.++|.+..
T Consensus 17 ~~~~l~~~nl~~~~~--~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 17 DHSVFEVEGVKVFYG--GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CCceEEEeeEEEEeC--CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 455799999999996 356999999888887 99999999999997431 124689999997642
Q ss_pred -hhhhcceEEEEecCCCCCCCCcHHhHHHH----------HHHHHHHHHHhcCCc----hhhhcc-----HHHHHHHHHH
Q 042733 88 -QETFARILGYCEQNDIHSPHDTLYDFTHC----------LYMFIEEGMELVELN----PFRQAL-----FEQRKRLTVA 147 (531)
Q Consensus 88 -~~~~~~~igyv~Q~~~~~~~ltv~e~~~~----------~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv~iA 147 (531)
...+++.++|++|+..+++. |+.++... ....+++.++.+++. +..++. .||||||+||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred hhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 12346789999999887764 88887211 122345566666653 233333 3999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc--------cCceeeecC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK--------QVGQEISVG 219 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~--------~~G~~v~~G 219 (531)
|||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.||++++|+ ++|+++..|
T Consensus 174 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g 251 (274)
T PRK14265 174 RAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFS 251 (274)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeC
Confidence 999999999999999999999999999999999965 689999999987 5778999999997 249999999
Q ss_pred CCC
Q 042733 220 PLG 222 (531)
Q Consensus 220 ~~~ 222 (531)
+++
T Consensus 252 ~~~ 254 (274)
T PRK14265 252 PTE 254 (274)
T ss_pred CHH
Confidence 863
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-31 Score=260.26 Aligned_cols=190 Identities=25% Similarity=0.260 Sum_probs=148.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~~ 94 (531)
++++|+++.|+ .+.+|+++|+.+.+| |||||||+|+|+|..+....+|++.++|.+... .. .++.
T Consensus 2 i~~~nl~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVE--DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeC--CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 67889998885 356889988888776 999999999999983101257999999976532 11 2356
Q ss_pred EEEEecCCCCCCCCcHHhHHH------------------HHHHHHHHHHHhcCCc-hhh------hccHHHHHHHHHHHH
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH------------------CLYMFIEEGMELVELN-PFR------QALFEQRKRLTVAVE 149 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~------------------~~~~~~~~~l~~l~l~-~~~------~~~~GerqRv~iA~a 149 (531)
++|++|++.+++.+++.++.. .....+++.++.+++. +.. +.+.||||||+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lara 159 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 159 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHH
Confidence 999999988777666543210 1123456677777774 222 244499999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhc-cCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYS-FDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~d~v~lL~~~G~~v~~G~~ 221 (531)
|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++ |++++.|+.
T Consensus 160 l~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g~i~~~g~~ 230 (248)
T PRK09580 160 AVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-GRIVKSGDF 230 (248)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-CeEEEeCCH
Confidence 99999999999999999999999999999999877899999999976 34444 899999986 999999875
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-31 Score=258.15 Aligned_cols=184 Identities=20% Similarity=0.300 Sum_probs=148.2
Q ss_pred EEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCc--eEEEEEEEcCcccchhhh-cceEEEEecCCC--C
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGG--YITRNITVSGYPEKQETF-ARILGYCEQNDI--H 104 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g--~~~G~i~~~g~~~~~~~~-~~~igyv~Q~~~--~ 104 (531)
++|++++... .++.+.+||||||||||+|+|+|..++. ..+|+|.++|.+...... ++.++|++|++. +
T Consensus 2 l~~vs~~i~~------Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~ 75 (230)
T TIGR02770 2 VQDLNLSLKR------GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAF 75 (230)
T ss_pred ccceeEEEcC------CCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhc
Confidence 4677777753 3578889999999999999999976530 147999999987643223 357999999974 5
Q ss_pred CCCCcHHhHH-----------HHHHHHHHHHHHhcCCc---hhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 042733 105 SPHDTLYDFT-----------HCLYMFIEEGMELVELN---PFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISG 165 (531)
Q Consensus 105 ~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~---~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsg 165 (531)
.+.+|+.++. ......+++.++.+++. +..++.+ ||||||+||++|+.+|++|+|||||+|
T Consensus 76 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~ 155 (230)
T TIGR02770 76 NPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTD 155 (230)
T ss_pred CcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 5667887651 11123467889999997 3445444 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 166 LDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 166 LD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|++ |+++..|++
T Consensus 156 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 156 LDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999874 899999999987 57778999999986 999998875
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=249.38 Aligned_cols=162 Identities=18% Similarity=0.314 Sum_probs=129.6
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcC---------CCchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRP---------GGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~---------gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~~ 94 (531)
++++|++++| +|+++|+.+++ ||||||||+|+|+|..++ .+|++.++|.+... ...++.
T Consensus 5 l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 5 LEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP--ASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccCHHHHHhCC
Confidence 5555665554 45555555554 499999999999998653 46899999976532 234567
Q ss_pred EEEEecCC---CCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 042733 95 LGYCEQND---IHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAA 171 (531)
Q Consensus 95 igyv~Q~~---~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~ 171 (531)
++|++|+. .+++.+|++|+...... .+.|||||++||+||+.+|++++|||||+|||+.++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~ 140 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL----------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAK 140 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh----------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHH
Confidence 99999984 57788899886322110 455999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 172 TTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 172 ~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
+.+.+.|++++++|+|+|+++|+++ ++.+.||++++|++ |++
T Consensus 141 ~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~-G~i 182 (182)
T cd03215 141 AEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYE-GRI 182 (182)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecC-CcC
Confidence 9999999999877899999999986 57788999999986 763
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=299.99 Aligned_cols=188 Identities=23% Similarity=0.275 Sum_probs=157.5
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++||+|+|+..++++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+|+
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcCcCCHHHHHh
Confidence 368999999999755568999999999998 99999999999998663 4799999998764 356788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchhhhc----------------cHHHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPFRQA----------------LFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~~~~----------------~~GerqRv~iA~aL~~~ 153 (531)
.+|||+|++.+++ -|++||.. ...+.+.++++..++.+..+. +.|||||++|||||+++
T Consensus 528 ~i~~v~Q~~~lf~-gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 528 QLGVVLQNGRLMS-GSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred ccEEEccCCccCc-ccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999988765 69999832 223456677777776654322 23899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++|+||||||+||+.+.+++.+.|+++ ++|+|+++|+++ ..+.+|+|++|++ |+++..|+.+
T Consensus 607 p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~-G~iv~~G~~~ 669 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA-GRVVQQGTYD 669 (686)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999876 589999999985 4577999999986 9999999853
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=268.69 Aligned_cols=193 Identities=17% Similarity=0.154 Sum_probs=156.2
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch-----
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ----- 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~----- 88 (531)
..|+++|++++|..+.+.+|+|+|+.+.+| |||||||+++|+|..+. ...+|+|.++|.+...
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 468999999999644457999999999988 99999999999997531 1347999999987642
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhHHH--H-------H---HHHHHHHHHhcCCch----hhhc-----cHHHHHHHHHH
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDFTH--C-------L---YMFIEEGMELVELNP----FRQA-----LFEQRKRLTVA 147 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~~~--~-------~---~~~~~~~l~~l~l~~----~~~~-----~~GerqRv~iA 147 (531)
..+++.++|++|++.++. .|++|+.. . . ...+.+.++.+++.+ ..+. +.|||||++||
T Consensus 159 ~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA 237 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA 237 (329)
T ss_pred HhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence 245678999999988774 79998732 1 0 112455677776632 2222 23999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|+|++||+++ .+.+.||++++|++ |+++..|+++
T Consensus 238 RAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G~i~e~g~~~ 309 (329)
T PRK14257 238 RAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-GWIEEAGETK 309 (329)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999999999875 699999999987 46778999999996 9999999864
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=265.51 Aligned_cols=189 Identities=15% Similarity=0.209 Sum_probs=157.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.|+++|++++|+.+...+|+|+|+.+.+| |||||||+++|+|..+ .+|+|.++|.+... ..+++.
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhhhCCHHHHhhh
Confidence 47899999999644557999999999888 9999999999999865 25999999986532 346778
Q ss_pred EEEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchhhhc----------------cHHHHHHHHHHHHHhhCC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPFRQA----------------LFEQRKRLTVAVEFVANP 154 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~~~~----------------~~GerqRv~iA~aL~~~p 154 (531)
++|++|++.+++ .|++++.. ...+.+.+.++.+|+.+..+. +.|||||++|||||+.+|
T Consensus 79 i~~v~q~~~lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999998887 49998742 123456677888888765443 349999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
++++|||||+|||+.+...+.+.|+++. +++|||+++|+++ .+. .|||+++|++ |+++..|++++
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl~~-G~i~~~g~~~~ 222 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVIEE-NKVRQYDSIQK 222 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEecC-CeEeecCCHHH
Confidence 9999999999999999999999999874 4899999999986 444 5999999986 99999998753
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=263.70 Aligned_cols=191 Identities=20% Similarity=0.235 Sum_probs=154.2
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccc-----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEK----- 87 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~----- 87 (531)
...|+++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..+. ...+|+|.++|.+..
T Consensus 37 ~~~l~i~~l~~~~~--~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 37 ETVIEARDLNVFYG--DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CceEEEEEEEEEEC--CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 45699999999995 357999999998887 99999999999997541 124799999997642
Q ss_pred hhhhcceEEEEecCCCCCCCCcHHhHHH----------HHHHHHHHHHHhcCCc----hhhhcc-----HHHHHHHHHHH
Q 042733 88 QETFARILGYCEQNDIHSPHDTLYDFTH----------CLYMFIEEGMELVELN----PFRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 88 ~~~~~~~igyv~Q~~~~~~~ltv~e~~~----------~~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv~iA~ 148 (531)
....++.++|++|++.+++. |+.|+.. .....+++.++.+++. +..++. .|||||++||+
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAr 193 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIAR 193 (285)
T ss_pred hHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHH
Confidence 12356789999999887775 9988722 1234567788888874 233333 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEE-EEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELF-LLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~-lL~~~G~~v~~G~~ 221 (531)
+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++ .+...||+++ +|++ |+++..|++
T Consensus 194 aL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~~-G~i~~~g~~ 264 (285)
T PRK14254 194 AIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLTG-GELVEFDDT 264 (285)
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEeeC-CEEEEeCCH
Confidence 99999999999999999999999999999999976 489999999987 5677899975 5675 999988875
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=286.13 Aligned_cols=189 Identities=24% Similarity=0.321 Sum_probs=155.8
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~ 93 (531)
.++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++
T Consensus 4 ~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~ 79 (501)
T PRK11288 4 YLSFDGIGKTFP--GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEMRFASTTAALAA 79 (501)
T ss_pred eEEEeeeEEEEC--CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCCCCHHHHHhC
Confidence 477888888884 346788888777766 99999999999998653 46899999976431 23456
Q ss_pred eEEEEecCCCCCCCCcHHhHHH--------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH--------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~--------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
.+||++|++.+++.+||.++.. ....++++.++.+++.+..++.+ ||||||+||++|+.+|
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p 159 (501)
T PRK11288 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNA 159 (501)
T ss_pred CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCC
Confidence 7999999998899999988721 11245677899999976555544 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|++ |+++..++.
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 224 (501)
T PRK11288 160 RVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVATFDD 224 (501)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCc
Confidence 999999999999999999999999999878999999999987 56788999999986 999876653
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=261.43 Aligned_cols=183 Identities=23% Similarity=0.350 Sum_probs=152.2
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEEEEecCCCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGYCEQNDIHS 105 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~igyv~Q~~~~~ 105 (531)
.++|+++++.. ..+.+.+||||||||||+|+|+|..+. +|++.++|.+... ...++.++|++|++.++
T Consensus 11 ~l~~vsl~i~~------Gei~~l~G~nGsGKSTLl~~l~Gl~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 81 (248)
T PRK03695 11 RLGPLSAEVRA------GEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPP 81 (248)
T ss_pred eecceEEEEcC------CCEEEEECCCCCCHHHHHHHHcCCCCC---CeEEEECCEecCcCCHHHHhhheEEecccCccC
Confidence 46788888753 356788899999999999999998642 6999999976532 23456689999998888
Q ss_pred CCCcHHhHHH----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh-------CCCeEEEeCCC
Q 042733 106 PHDTLYDFTH----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA-------NPSIISRDEPI 163 (531)
Q Consensus 106 ~~ltv~e~~~----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~-------~p~lllLDEPt 163 (531)
+.+|+.++.. .....+++.++.+++.+..++.+ |||||++||++|+. +|++++|||||
T Consensus 82 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt 161 (248)
T PRK03695 82 FAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPM 161 (248)
T ss_pred CCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCc
Confidence 8899988621 12345778899999987666554 99999999999998 67999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 164 SGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|++ |+++..|+.+
T Consensus 162 ~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 218 (248)
T PRK03695 162 NSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRD 218 (248)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999877999999999987 57789999999986 9999988753
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=258.90 Aligned_cols=192 Identities=22% Similarity=0.281 Sum_probs=152.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc-
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR- 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~- 93 (531)
.++++|+++.|+ ++.+|+++|+.+.+| |||||||+|+|+|.....+.+|++.++|.+... ...++
T Consensus 7 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVN--ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeC--CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 578999999985 356999999888887 999999999999962111246899999976532 12222
Q ss_pred eEEEEecCCCCCCCCcHHhHHHH------------------HHHHHHHHHHhcCCch-hhh------ccHHHHHHHHHHH
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTHC------------------LYMFIEEGMELVELNP-FRQ------ALFEQRKRLTVAV 148 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~~------------------~~~~~~~~l~~l~l~~-~~~------~~~GerqRv~iA~ 148 (531)
.++|++|++.+++.+|+.++... ....+.+.++.+++.+ ..+ .+.||||||+||+
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~ 164 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQ 164 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHH
Confidence 47899999988888888776210 1134567788888863 322 3449999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhc-cCeEEEEccCceeeecCCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYS-FDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|+.+|++++|||||+|||+.+++.+.+.|++++++|+|||++||+++. +... +|++++|++ |++++.|+++
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 237 (252)
T CHL00131 165 MALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQN-GKIIKTGDAE 237 (252)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeC-CEEEEecChh
Confidence 9999999999999999999999999999999998779999999999763 4444 899999986 9999999863
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-31 Score=262.11 Aligned_cols=190 Identities=16% Similarity=0.188 Sum_probs=151.1
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC--c-eEEEEEEEcCcccc-----hh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG--G-YITRNITVSGYPEK-----QE 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~--g-~~~G~i~~~g~~~~-----~~ 89 (531)
.|+++|++++|+ .+++|+|+|+.+.+| |||||||+|+|+|..+. . ..+|+|.++|.+.. ..
T Consensus 10 ~l~i~~v~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYG--SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEEC--CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 589999999995 357899999888887 99999999999996431 1 24799999997642 22
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH----------HHHHHHHHHHHhcCCch----hhhc-----cHHHHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH----------CLYMFIEEGMELVELNP----FRQA-----LFEQRKRLTVAVEF 150 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~----------~~~~~~~~~l~~l~l~~----~~~~-----~~GerqRv~iA~aL 150 (531)
..++.++|++|++.+++ .|+.|+.. ...+.+++.++.+++.+ ..++ +.|||||++|||||
T Consensus 88 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral 166 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI 166 (264)
T ss_pred HHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 34667999999988777 49988721 11233455566666632 2232 33999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc--------CceeeecCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ--------VGQEISVGPL 221 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~--------~G~~v~~G~~ 221 (531)
+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|++ .|+++..|++
T Consensus 167 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 167 AVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDRT 243 (264)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCCH
Confidence 999999999999999999999999999999976 589999999987 57889999999971 3899998875
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=259.85 Aligned_cols=190 Identities=19% Similarity=0.261 Sum_probs=152.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--Cce--EEEEEEEcCcccc---hhh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--GGY--ITRNITVSGYPEK---QET 90 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~g~--~~G~i~~~g~~~~---~~~ 90 (531)
.+++++++++|+ .+.+|+|+|+.+.+| |||||||+++|+|..+ .|. +.|++.++|.+.. ...
T Consensus 10 ~i~~~~~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYIN--DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecC--CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 478899999885 457889999888877 9999999999999754 332 3466666665532 223
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhccH-----HHHHHHHHHHH
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQALF-----EQRKRLTVAVE 149 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~~~-----GerqRv~iA~a 149 (531)
.++.++|++|++.+++.+|+.++.. .....+.+.++.+++.+ ..+..+ |||||++|||+
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lara 167 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARA 167 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHH
Confidence 5678999999999888899988721 11234567788888852 333333 99999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+...||++++|++ |+++..|+.
T Consensus 168 l~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~-g~i~~~g~~ 236 (257)
T PRK14246 168 LALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN-GELVEWGSS 236 (257)
T ss_pred HHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999999999999865 699999999986 46688999999986 999999875
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=258.99 Aligned_cols=189 Identities=19% Similarity=0.207 Sum_probs=150.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCC--C-ceEEEEEEEcCcccch-----h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKP--G-GYITRNITVSGYPEKQ-----E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~--~-g~~~G~i~~~g~~~~~-----~ 89 (531)
.++++||++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+ + ...+|+|.++|.+... .
T Consensus 3 ~l~~~~v~~~~~--~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFD--DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeC--CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 467888888885 356888888887776 9999999999999642 1 1247999999976431 2
Q ss_pred hhcceEEEEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch----hhhcc-----HHHHHHHHHHH
Q 042733 90 TFARILGYCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNP----FRQAL-----FEQRKRLTVAV 148 (531)
Q Consensus 90 ~~~~~igyv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~----~~~~~-----~GerqRv~iA~ 148 (531)
..++.++|++|++.+++. |+.++.. .....+.+.++.+++.+ ..++. .|||||++|||
T Consensus 81 ~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar 159 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHH
Confidence 346789999999888774 8888621 11234566677777632 22333 39999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++...+|++++|++ |++++.|++
T Consensus 160 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14266 160 TIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GEIIESGLT 229 (250)
T ss_pred HHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CeEEEeCCH
Confidence 99999999999999999999999999999999864 889999999987 57788999999986 999999875
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=248.72 Aligned_cols=167 Identities=25% Similarity=0.397 Sum_probs=136.6
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ig 96 (531)
++++|++++|+...+.+++|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ..+++.++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGVPVSDLEKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCEEHHHHHHHHHhhEE
Confidence 3678888888633236888888888777 99999999999998653 46899999976432 23567799
Q ss_pred EEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 042733 97 YCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR 176 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~ 176 (531)
|++|++.+++ .|++|+. ....+.|||||++|||+++.+|++++|||||+|||+.+++.+++
T Consensus 79 ~~~q~~~~~~-~tv~~~i------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~ 139 (178)
T cd03247 79 VLNQRPYLFD-TTLRNNL------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139 (178)
T ss_pred EEccCCeeec-ccHHHhh------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence 9999987765 6887642 23445599999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 177 MVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 177 ~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
.|++++ ++.|||++||+++ ++ ..+|++++|++ |++++.|
T Consensus 140 ~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~-g~i~~~~ 178 (178)
T cd03247 140 LIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLEN-GKIIMQG 178 (178)
T ss_pred HHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEecC
Confidence 999985 5899999999987 34 46999999986 8988654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=285.95 Aligned_cols=187 Identities=23% Similarity=0.299 Sum_probs=150.5
Q ss_pred EeEEEEEeCCCccccccEEEEEc---------CCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcceEEE
Q 042733 31 NEIVYSVDMPQIGDLNSLSGAFR---------PGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFARILGY 97 (531)
Q Consensus 31 ~~ls~~~~~~~~~iL~~vs~~i~---------~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~~igy 97 (531)
+|++++|+ ++.+|+|+|+.+. |||||||||+|+|+|..++ .+|+|.++|.+... ...++.++|
T Consensus 2 ~nl~~~~~--~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 2 SNISKSFP--GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CceEEEeC--CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEE
Confidence 35555553 2345555555555 5599999999999998653 47999999976431 224567999
Q ss_pred EecCCCCCCCCcHHhHHH--------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 98 CEQNDIHSPHDTLYDFTH--------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~--------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
++|++.+++.+||.|+.. .....+++.++.+++.+..++.+ ||||||+||++|+.+|++|+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lll 157 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVI 157 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 999988888999988621 11235677889999876655554 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++..|++++
T Consensus 158 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 158 MDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 99999999999999999999999888999999999987 56778999999996 99999998764
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=248.47 Aligned_cols=162 Identities=25% Similarity=0.312 Sum_probs=134.2
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-----hhhcce
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-----ETFARI 94 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-----~~~~~~ 94 (531)
+++|++++|+ ++++++++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++.
T Consensus 2 ~~~~l~~~~~--~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 2 ELKNVSKRYG--QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred EEEEEEEEEC--CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccchhHHHHhhc
Confidence 5677777774 345777777777766 99999999999998653 47999999976432 245678
Q ss_pred EEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV 174 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i 174 (531)
++|++|++.+++..|++|+.... .+.|||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l 139 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV 139 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHH
Confidence 99999998888888987752210 455999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 175 IRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 175 ~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
.+.|++++++ |+|+|++||++. ++.+.||++++|++ |+
T Consensus 140 ~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~ 178 (178)
T cd03229 140 RALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRD-GK 178 (178)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CC
Confidence 9999999887 899999999986 46668999999986 64
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=259.13 Aligned_cols=187 Identities=22% Similarity=0.321 Sum_probs=145.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++|++++|+. .+.+++|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.
T Consensus 2 ~l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 2 EIEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred eEEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeHHHcCHHHHhhh
Confidence 4688999998852 245889988888777 99999999999998653 46899999976432 235677
Q ss_pred EEEEecCCCCCCCCcHHhHHHH-----HHHHHHHHHHhcCCchhh----------------hccHHHHHHHHHHHHHhhC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHC-----LYMFIEEGMELVELNPFR----------------QALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~-----~~~~~~~~l~~l~l~~~~----------------~~~~GerqRv~iA~aL~~~ 153 (531)
++|++|++.+++. |+.|+... ....+++.++.+++.+.. ..+.||||||+||++|+.+
T Consensus 79 i~~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 79 IGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred EEEecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 9999999877764 88887211 112233344444443222 2223999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|++++|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++ ..||++++|++ |++++.|+.
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g~~~~~~~~ 221 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-GKIIEEGTH 221 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-CeEEEeCCH
Confidence 99999999999999999999999999986 5899999999986 34 45999999986 999987764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-32 Score=260.04 Aligned_cols=172 Identities=20% Similarity=0.353 Sum_probs=151.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhhcceEEEEecCCCCCCCCcHHhH-----H
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETFARILGYCEQNDIHSPHDTLYDF-----T 114 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~~~~igyv~Q~~~~~~~ltv~e~-----~ 114 (531)
+|+..+|++|||||||+|+|+|+..+ .+|.|.+||....+ ...+|++|||+||-.+||++||+.| .
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rP--deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~ 102 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRP--DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMW 102 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCc--cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhc
Confidence 78999999999999999999997653 46888888875321 2346889999999999999999988 2
Q ss_pred HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeE
Q 042733 115 HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTV 188 (531)
Q Consensus 115 ~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tv 188 (531)
.......+++.+.+|++|..++.. ||||||+|+|||++.|++|+||||.+.||..-+.+++-.|.+++++ ...|
T Consensus 103 ~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPI 182 (352)
T COG4148 103 KSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPI 182 (352)
T ss_pred ccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCE
Confidence 223456788999999999998876 9999999999999999999999999999999999999999999986 8899
Q ss_pred EEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 189 VCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 189 i~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+.+||.++ |+.+++|+|++|.+ |++.+.|+.+
T Consensus 183 lYVSHS~~-Ev~RLAd~vV~le~-GkV~A~g~~e 214 (352)
T COG4148 183 LYVSHSLD-EVLRLADRVVVLEN-GKVKASGPLE 214 (352)
T ss_pred EEEecCHH-HHHhhhheEEEecC-CeEEecCcHH
Confidence 99999987 79999999999986 9999999864
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=259.64 Aligned_cols=181 Identities=22% Similarity=0.283 Sum_probs=147.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.+++ +..++|
T Consensus 4 ~l~~~~l~~~~~--~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~~--------~~~i~~ 71 (251)
T PRK09544 4 LVSLENVSVSFG--QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNG--------KLRIGY 71 (251)
T ss_pred EEEEeceEEEEC--CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECC--------ccCEEE
Confidence 467888888885 346888888777766 99999999999998653 468898876 235899
Q ss_pred EecCCCCCCCC--cHHhHHH----HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 042733 98 CEQNDIHSPHD--TLYDFTH----CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGL 166 (531)
Q Consensus 98 v~Q~~~~~~~l--tv~e~~~----~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgL 166 (531)
++|++.+++.+ |+.++.. .....+.+.++.+++.+..++.+ |||||++||++|+.+|++++|||||+||
T Consensus 72 v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L 151 (251)
T PRK09544 72 VPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGV 151 (251)
T ss_pred eccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 99998776653 6666521 11245677889999987766655 9999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 167 DARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 167 D~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|+ |+++..|+++
T Consensus 152 D~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~--~~i~~~g~~~ 205 (251)
T PRK09544 152 DVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN--HHICCSGTPE 205 (251)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC--CceEeeCCHH
Confidence 999999999999999875 899999999987 5778899999995 4688888753
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=276.47 Aligned_cols=194 Identities=24% Similarity=0.361 Sum_probs=163.5
Q ss_pred cceEEEEEeEEEEEeCC---------CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 042733 24 EPHYISLNEIVYSVDMP---------QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYP 85 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~---------~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~ 85 (531)
....++++||++.|..+ ...+++|||+.+.+| |||||||.|+|+|+.++ ..|.+.++|.+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~ 354 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQD 354 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcc
Confidence 34568999999999842 236899999999998 99999999999998664 46899999876
Q ss_pred c--c---hhhhcceEEEEecCC--CCCCCCcHHhH------------HHHHHHHHHHHHHhcCCch-hhhccH-----HH
Q 042733 86 E--K---QETFARILGYCEQND--IHSPHDTLYDF------------THCLYMFIEEGMELVELNP-FRQALF-----EQ 140 (531)
Q Consensus 86 ~--~---~~~~~~~igyv~Q~~--~~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~-~~~~~~-----Ge 140 (531)
. . ....++.+-+++|++ .+.|.+||.+. ....++++++.++.++|.+ ..++.+ ||
T Consensus 355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQ 434 (539)
T COG1123 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQ 434 (539)
T ss_pred cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcch
Confidence 2 1 123456777888876 57899999987 1334457899999999986 456655 99
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 141 RKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 141 rqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|||++|||||+.+|++|++|||||.||+..+.+++++|+++.++ |.|.|++|||.+ -+.+.||||.+|.+ |+++..|
T Consensus 435 rQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~iVE~G 512 (539)
T COG1123 435 RQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GRIVEEG 512 (539)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-CeEEEeC
Confidence 99999999999999999999999999999999999999999976 999999999987 37779999999996 9999999
Q ss_pred CC
Q 042733 220 PL 221 (531)
Q Consensus 220 ~~ 221 (531)
+.
T Consensus 513 ~~ 514 (539)
T COG1123 513 PT 514 (539)
T ss_pred CH
Confidence 75
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-31 Score=291.48 Aligned_cols=193 Identities=20% Similarity=0.235 Sum_probs=160.6
Q ss_pred eEEEEEeEEEEEeCC---------CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc
Q 042733 26 HYISLNEIVYSVDMP---------QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK 87 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~---------~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~ 87 (531)
..|+++||++.|+.. ...+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+..
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEECC
Confidence 469999999999521 246899999888887 99999999999998653 4689999997542
Q ss_pred h------hhhcceEEEEecCC--CCCCCCcHHhHHH------------HHHHHHHHHHHhcCCc-hhhhccH-----HHH
Q 042733 88 Q------ETFARILGYCEQND--IHSPHDTLYDFTH------------CLYMFIEEGMELVELN-PFRQALF-----EQR 141 (531)
Q Consensus 88 ~------~~~~~~igyv~Q~~--~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~-~~~~~~~-----Ger 141 (531)
. ..+++.++|++|++ .+++.+||.++.. ....++.+.++.+|+. ...++.+ |||
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqr 469 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQR 469 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence 1 12456799999996 5788899988721 1224577889999995 4555554 999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 142 KRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 142 qRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
|||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||++ .+.+.||++++|++ |+++..|+
T Consensus 470 QRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~ 547 (623)
T PRK10261 470 QRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGP 547 (623)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecC
Confidence 9999999999999999999999999999999999999999875 899999999987 57788999999986 99999998
Q ss_pred CC
Q 042733 221 LG 222 (531)
Q Consensus 221 ~~ 222 (531)
++
T Consensus 548 ~~ 549 (623)
T PRK10261 548 RR 549 (623)
T ss_pred HH
Confidence 64
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=293.10 Aligned_cols=189 Identities=20% Similarity=0.292 Sum_probs=157.7
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++|+|+. ++++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++
T Consensus 339 ~~i~~~~v~f~y~~-~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i~~~~~~~l~~ 415 (592)
T PRK10790 339 GRIDIDNVSFAYRD-DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRPLSSLSHSVLRQ 415 (592)
T ss_pred CeEEEEEEEEEeCC-CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEhhhCCHHHHHh
Confidence 46899999999973 457999999999888 99999999999998664 3689999998754 346788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchhhhc----------------cHHHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPFRQA----------------LFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~~~~----------------~~GerqRv~iA~aL~~~ 153 (531)
.++|++|++.+++ -|+++|.. ...+.+.++++..|+.+..++ +.|||||++|||||+++
T Consensus 416 ~i~~v~Q~~~lF~-~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~ 494 (592)
T PRK10790 416 GVAMVQQDPVVLA-DTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQT 494 (592)
T ss_pred heEEEccCCcccc-chHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999998876 49999821 123456677777776654332 22899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++++||||||+||+.+.+.+.+.|+++.+ ++|+|++||+++ ....||+|++|++ |+++..|+.+
T Consensus 495 ~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~-G~i~~~G~~~ 559 (592)
T PRK10790 495 PQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHR-GQAVEQGTHQ 559 (592)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999998764 699999999985 4567999999986 9999999863
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=300.76 Aligned_cols=187 Identities=24% Similarity=0.338 Sum_probs=155.7
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++|+|+..++++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+|+
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~i~~~~~~~lr~ 553 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIPREEIPREVLAN 553 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEeHHHCCHHHHHh
Confidence 468999999999865568999999999998 99999999999998653 4699999998764 345788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhhc----------------cHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQA----------------LFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~~----------------~~GerqRv~iA~aL~~ 152 (531)
.+|||+|++.++ +.|++||.. ...+.+.++++..++.+..+. +.|||||++|||||++
T Consensus 554 ~i~~v~Q~~~lf-~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~ 632 (710)
T TIGR03796 554 SVAMVDQDIFLF-EGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632 (710)
T ss_pred heeEEecCChhh-hccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence 999999998877 469999821 123445566666666543322 2289999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++++||||||+||+.+++++.+.|++ .++|+|++||+++ ....||++++|++ |+++..|+.
T Consensus 633 ~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~-G~i~~~G~~ 695 (710)
T TIGR03796 633 NPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER-GKVVQRGTH 695 (710)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC-CEEEEecCH
Confidence 9999999999999999999999999976 4899999999986 3567999999986 999999985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=258.74 Aligned_cols=192 Identities=18% Similarity=0.172 Sum_probs=155.5
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC--c-eEEEEEEEcCcccch----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG--G-YITRNITVSGYPEKQ---- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~--g-~~~G~i~~~g~~~~~---- 88 (531)
+..+.++++++.|+ ++.+|+++|+.+.|| |||||||+|+|+|..++ + ..+|+|.++|.+...
T Consensus 6 ~~~~~~~~~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 83 (261)
T PRK14263 6 PIVMDCKLDKIFYG--NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 (261)
T ss_pred CceEEEEeEEEEeC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccc
Confidence 55678888888885 457899999888887 99999999999997542 1 257999999986521
Q ss_pred -hhhcceEEEEecCCCCCCCCcHHhHHH----------HHHHHHHHHHHhcCCchh----hh-----ccHHHHHHHHHHH
Q 042733 89 -ETFARILGYCEQNDIHSPHDTLYDFTH----------CLYMFIEEGMELVELNPF----RQ-----ALFEQRKRLTVAV 148 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~~~~~ltv~e~~~----------~~~~~~~~~l~~l~l~~~----~~-----~~~GerqRv~iA~ 148 (531)
..+++.++|++|++.++ ..|+.|+.. .....+++.++.+++.+. .+ .+.|||||++|||
T Consensus 84 ~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~lar 162 (261)
T PRK14263 84 PVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIAR 162 (261)
T ss_pred hHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 23467799999998876 589988732 122456778888887532 12 2339999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc-------cCceeeecCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK-------QVGQEISVGPL 221 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~-------~~G~~v~~G~~ 221 (531)
||+++|++++|||||+|||+.++.++.+.|++++ +++|+|++||+++ ++.+.||++++|+ ++|+++..|+.
T Consensus 163 al~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 163 AIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 9999999999999999999999999999999995 4789999999987 5778899999995 24999999875
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=280.30 Aligned_cols=190 Identities=23% Similarity=0.318 Sum_probs=159.8
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~ 92 (531)
++.++.+|+++.|+.++ ++++|+|+++.+| |||||||+++|+|..++ ..|+|.+||.+.. ...++
T Consensus 318 ~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng~~l~~l~~~~~~ 394 (559)
T COG4988 318 PIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDLSPEAWR 394 (559)
T ss_pred CceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCccccccCHHHHH
Confidence 56777789999998544 8999999999988 99999999999998764 5799999998753 45789
Q ss_pred ceEEEEecCCCCCCCCcHHhHH-----HHHHHHHHHHHHhcCCchhhhc---------------cHHHHHHHHHHHHHhh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFT-----HCLYMFIEEGMELVELNPFRQA---------------LFEQRKRLTVAVEFVA 152 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~-----~~~~~~~~~~l~~l~l~~~~~~---------------~~GerqRv~iA~aL~~ 152 (531)
+.++||+|++.+++ -|++||. ...++.+.++++..++.+..+. +.||+|||++||||++
T Consensus 395 k~i~~v~Q~p~lf~-gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~ 473 (559)
T COG4988 395 KQISWVSQNPYLFA-GTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS 473 (559)
T ss_pred hHeeeeCCCCcccc-ccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence 99999999987764 7899982 1223456667777776655443 2289999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++++++||||++||.++.+.+.+.|.++++ ++|||++||++. ....+|+|++|++ |+++..|..+
T Consensus 474 ~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld~-G~l~~~g~~~ 539 (559)
T COG4988 474 PASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLDN-GRLVEQGTHE 539 (559)
T ss_pred CCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEecC-CceeccCCHH
Confidence 9999999999999999999999999999987 499999999976 3567899999996 9999999864
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=313.02 Aligned_cols=192 Identities=23% Similarity=0.338 Sum_probs=165.3
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFAR 93 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~ 93 (531)
...|+++||++.|+.+++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~dI~~~~~~~r~ 1003 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKDIETNLDAVRQ 1003 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCEECcchHHHHhh
Confidence 3579999999999643567999999877766 99999999999998653 47999999987532 23567
Q ss_pred eEEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 94 ILGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
.+||++|++.+++.+||+|+. ...++.+++.++.+||.+..++.+ ||||||+||+||+.+|+++
T Consensus 1004 ~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVL 1083 (2272)
T TIGR01257 1004 SLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVV 1083 (2272)
T ss_pred cEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 899999999999999999972 122345788899999988777765 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||||+|||+.+++.++++|++++ +|+|||++||+++ ++..++||+++|++ |+++..|++
T Consensus 1084 LLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~Gs~ 1144 (2272)
T TIGR01257 1084 VLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSGTP 1144 (2272)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 9999999999999999999999995 5999999999987 57778999999996 999999986
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=293.67 Aligned_cols=189 Identities=19% Similarity=0.241 Sum_probs=157.4
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++|+|+..++++|+|+|++++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~~~~~~~~~~ 417 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHDLRDYTLASLRN 417 (582)
T ss_pred CeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEEhhhcCHHHHHh
Confidence 369999999999755567999999999888 99999999999998663 4699999998754 345778
Q ss_pred eEEEEecCCCCCCCCcHHhHHH------HHHHHHHHHHHhcCCchhh-------hc---------cHHHHHHHHHHHHHh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH------CLYMFIEEGMELVELNPFR-------QA---------LFEQRKRLTVAVEFV 151 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~------~~~~~~~~~l~~l~l~~~~-------~~---------~~GerqRv~iA~aL~ 151 (531)
.++|++|++.+++ -|++||.. ...+.++++++..++.+.. |+ +.|||||++|||||+
T Consensus 418 ~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall 496 (582)
T PRK11176 418 QVALVSQNVHLFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_pred hceEEccCceeec-chHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 8999999988775 79999822 1234566667766655432 22 238999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|++++||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.||+|++|++ |+++..|+.
T Consensus 497 ~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~-g~i~e~g~~ 562 (582)
T PRK11176 497 RDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED-GEIVERGTH 562 (582)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999874 4799999999985 4677999999986 999999985
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=293.32 Aligned_cols=187 Identities=21% Similarity=0.288 Sum_probs=152.9
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++||++.|.. ++++|+|+|+.++|| |||||||+++|+|.. + .+|+|.++|.+.. ...+++
T Consensus 348 ~~i~~~~vsf~~~~-~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i~~~~~~~lr~ 423 (588)
T PRK11174 348 VTIEAEDLEILSPD-GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIELRELDPESWRK 423 (588)
T ss_pred ceEEEEeeEEeccC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEecccCCHHHHHh
Confidence 46999999976653 467999999999999 999999999999987 3 3699999998754 356788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhh-------hc---------cHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFR-------QA---------LFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~-------~~---------~~GerqRv~iA~aL~~ 152 (531)
.++||+|++.++. .|++||-. ...+.++++++..++.+.. |+ +.|||||++|||||++
T Consensus 424 ~i~~v~Q~~~LF~-~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~ 502 (588)
T PRK11174 424 HLSWVGQNPQLPH-GTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ 502 (588)
T ss_pred heEEecCCCcCCC-cCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999988765 69999821 1223455555555544322 22 2289999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++|+||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ....+|+|++|++ |+++..|+.
T Consensus 503 ~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~-G~i~e~G~~ 567 (588)
T PRK11174 503 PCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD-GQIVQQGDY 567 (588)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC-CeEeecCCH
Confidence 999999999999999999999999999885 5899999999985 4567999999986 999999985
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=252.07 Aligned_cols=195 Identities=23% Similarity=0.351 Sum_probs=161.7
Q ss_pred cccccceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---
Q 042733 20 VLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK--- 87 (531)
Q Consensus 20 ~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~--- 87 (531)
..+..+.-|+++|++..|. ++.+|+|+|..+.|| ||||||||++++|..+++ +|.+.+.|....
T Consensus 24 ~~~~~~~li~l~~v~v~r~--gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G~~~G~~~ 99 (257)
T COG1119 24 PIEINEPLIELKNVSVRRN--GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGRRFGKGE 99 (257)
T ss_pred CCCCCcceEEecceEEEEC--CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--CCceeeeeeeccCCc
Confidence 3344556799999999995 688999999988877 999999999999976543 577777776532
Q ss_pred -hhhhcceEEEEecC--CCCCCCCcHHhH----------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHH
Q 042733 88 -QETFARILGYCEQN--DIHSPHDTLYDF----------------THCLYMFIEEGMELVELNPFRQALF-----EQRKR 143 (531)
Q Consensus 88 -~~~~~~~igyv~Q~--~~~~~~ltv~e~----------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqR 143 (531)
..++|+.||+|.-+ ..+.+..+|+|. .+....++..+++.+|+.+.+++.. |||||
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rr 179 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRR 179 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHH
Confidence 15678999999643 233445566553 2345567888999999999888876 99999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM--GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
|-|||||+++|++||||||++|||...++++.+.|.+++.. +.++|++||+++ |+..++++++++++ |++++.|.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~-g~v~~~g~ 256 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKE-GEVVAQGK 256 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeC-Cceeeccc
Confidence 99999999999999999999999999999999999999865 789999999987 78889999999996 99999874
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-31 Score=258.18 Aligned_cols=187 Identities=23% Similarity=0.319 Sum_probs=142.7
Q ss_pred EEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcce
Q 042733 28 ISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~ 94 (531)
++++|+++.|+.. ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+.. ....++.
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 78 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIRDLNLRWLRSQ 78 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehhhcCHHHHHhh
Confidence 3678888888532 235888888888777 99999999999998653 4689999997643 2234567
Q ss_pred EEEEecCCCCCCCCcHHhHHHH-----HHHHHHHHHHhcCCch-----------h-----hhccHHHHHHHHHHHHHhhC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHC-----LYMFIEEGMELVELNP-----------F-----RQALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~-----~~~~~~~~l~~l~l~~-----------~-----~~~~~GerqRv~iA~aL~~~ 153 (531)
++|++|++.+++ .|++|+... ......+.++..++.+ . .+.+.||||||+||++|+.+
T Consensus 79 i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~ 157 (238)
T cd03249 79 IGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRN 157 (238)
T ss_pred EEEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcC
Confidence 999999987765 699887210 0111222222222221 1 12234999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|++++|||||+|||+.+++.+.+.|++++ +|+|||++||+++ ++. .||++++|++ |++++.|+.
T Consensus 158 p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~-G~i~~~~~~ 221 (238)
T cd03249 158 PKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQN-GQVVEQGTH 221 (238)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999987 7999999999987 354 7999999996 999988874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=258.06 Aligned_cols=191 Identities=17% Similarity=0.196 Sum_probs=153.7
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC--c-eEEEEEEEcCcccc-----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG--G-YITRNITVSGYPEK----- 87 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~--g-~~~G~i~~~g~~~~----- 87 (531)
...|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ + ..+|+|.++|.+..
T Consensus 14 ~~~l~~~~l~~~~~--~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 14 QQKSEVNKLNFYYG--GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CceEEEEEEEEEEC--CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 44589999999996 357999999998887 99999999999997542 2 25799999886532
Q ss_pred --hhhhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCc----hhhhcc-----HHHHHHH
Q 042733 88 --QETFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELN----PFRQAL-----FEQRKRL 144 (531)
Q Consensus 88 --~~~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~----~~~~~~-----~GerqRv 144 (531)
...+++.++|++|++.+++. |++|+... ..+.+++.++.+++. +..++. .|||||+
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 170 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRL 170 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHH
Confidence 12356779999999888875 99887211 123456667777663 222332 3999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.||++++|++ |+++..|+.
T Consensus 171 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 244 (265)
T PRK14252 171 CIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYM-GELIEFGAT 244 (265)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999875 689999999986 57788999999986 999998875
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-31 Score=284.34 Aligned_cols=190 Identities=15% Similarity=0.169 Sum_probs=153.8
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~ 94 (531)
.|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|++.++|.+.. ....++.
T Consensus 3 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p--~~G~i~~~~~~~~~~~~~~~~~~ 78 (490)
T PRK10938 3 SLQISQGTFRLS--DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL--LSGERQSQFSHITRLSFEQLQKL 78 (490)
T ss_pred eEEEEeEEEEcC--CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCceEEECCcccccCCHHHHHHH
Confidence 467888888885 345788888777666 99999999999997653 4688888876532 1233456
Q ss_pred EEEEecCCCC--C------CCCcHHhHH---HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIH--S------PHDTLYDFT---HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~--~------~~ltv~e~~---~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
++|++|++.. + ..+|++++. .....++++.++.+++.+..++.+ ||||||+||++|+.+|++|+
T Consensus 79 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (490)
T PRK10938 79 VSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLI 158 (490)
T ss_pred hceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 8999998542 1 146887752 123456788999999987766665 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||||+|||+.+++.+.+.|++++++|.|||++||+++ .+.+.||++++|++ |+++..|+++
T Consensus 159 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 220 (490)
T PRK10938 159 LDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLAD-CTLAETGERE 220 (490)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999888999999999987 57788999999986 9999998754
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=251.65 Aligned_cols=177 Identities=24% Similarity=0.306 Sum_probs=144.8
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.++++|+++.|+ ++.+|+++|+.+.+| |||||||+++|+|..++ .+|+|.++|.+......++.++|
T Consensus 2 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 77 (207)
T PRK13539 2 MLEGEDLACVRG--GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDIDDPDVAEACHY 77 (207)
T ss_pred EEEEEeEEEEEC--CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeCcchhhHhhcEE
Confidence 468888888885 346888888888777 99999999999998653 46899999976432225667899
Q ss_pred EecCCCCCCCCcHHhHHHH-------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 042733 98 CEQNDIHSPHDTLYDFTHC-------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISG 165 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~-------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsg 165 (531)
++|++.+++..|+.++... ....+++.++.+++.+..++.. |||||++||++|+.+|++++|||||+|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 157 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999888888999987321 1234778899999977665544 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 166 LDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 166 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
||+.++..+.+.|++++++|+|||++||+++ ++.. |+++.+.
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~ 199 (207)
T PRK13539 158 LDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLG 199 (207)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeec
Confidence 9999999999999998878999999999986 3443 8887764
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=284.58 Aligned_cols=191 Identities=23% Similarity=0.227 Sum_probs=151.1
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcC---------------
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSG--------------- 83 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g--------------- 83 (531)
|+++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+-.+.+|+|.++|
T Consensus 1 l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFD--GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEEC--CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 36778888884 346788888777666 9999999999999741002468888762
Q ss_pred --------ccc----------ch---hhhcceEEEEecC-CCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCC
Q 042733 84 --------YPE----------KQ---ETFARILGYCEQN-DIHSPHDTLYDFTH-----------CLYMFIEEGMELVEL 130 (531)
Q Consensus 84 --------~~~----------~~---~~~~~~igyv~Q~-~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l 130 (531)
.+. .. ..+++.++|++|+ +.+++.+|++|+.. ....++++.++.+|+
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 111 00 1235679999997 67788899988721 123467788999999
Q ss_pred chhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccC
Q 042733 131 NPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFD 204 (531)
Q Consensus 131 ~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d 204 (531)
.+..++.+ ||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+.||
T Consensus 159 ~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d 237 (520)
T TIGR03269 159 SHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSD 237 (520)
T ss_pred hhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcC
Confidence 87666654 999999999999999999999999999999999999999999976 4999999999987 4667899
Q ss_pred eEEEEccCceeeecCCCC
Q 042733 205 ELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 205 ~v~lL~~~G~~v~~G~~~ 222 (531)
++++|++ |++++.|+++
T Consensus 238 ~i~~l~~-G~i~~~g~~~ 254 (520)
T TIGR03269 238 KAIWLEN-GEIKEEGTPD 254 (520)
T ss_pred EEEEEeC-CEEeeecCHH
Confidence 9999986 9999888753
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=287.01 Aligned_cols=190 Identities=25% Similarity=0.352 Sum_probs=153.2
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++|++++|+..++++|+|+|+.++|| |||||||+|+|+|..++ .+|++.++|.+... ..+++
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP--TSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEehhhCCHHHHhh
Confidence 469999999999754568999999999988 99999999999998653 46899999987532 45678
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCC-----------chh-----hhccHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVEL-----------NPF-----RQALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l-----------~~~-----~~~~~GerqRv~iA~aL~~ 152 (531)
.++|++|++.+++. |++|+-. ...+.+.+.++..++ +.. .+.+.|||||++||||+++
T Consensus 393 ~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 393 HIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred heEEecCCcccccc-cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 89999999888764 9998821 111223333333332 221 1223399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++++|||||+|||+.+++++.+.|+++..+|+|+|+++|+++ ..+.||++++|++ |+++..|+.
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~-G~i~~~g~~ 537 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQD-GRIARFGER 537 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEeeCCH
Confidence 99999999999999999999999999998767899999999986 3567999999986 999999975
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-31 Score=290.11 Aligned_cols=189 Identities=22% Similarity=0.314 Sum_probs=159.4
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++++|+.+++++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~~i~~~~~~~~r~ 414 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQPIADYSEAALRQ 414 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEhhhCCHHHHHh
Confidence 469999999999754457999999999998 99999999999998653 4699999998754 345788
Q ss_pred eEEEEecCCCCCCCCcHHhHH-----HHHHHHHHHHHHhcCCchhhhc---------------cHHHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFT-----HCLYMFIEEGMELVELNPFRQA---------------LFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~-----~~~~~~~~~~l~~l~l~~~~~~---------------~~GerqRv~iA~aL~~~ 153 (531)
.++|++|++.+++ .|++||. ....+.+.++++..++.+..+. +.|||||++|||+++++
T Consensus 415 ~i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~ 493 (574)
T PRK11160 415 AISVVSQRVHLFS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493 (574)
T ss_pred heeEEcccchhhc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 8999999988775 6999983 1234557778888888765432 22899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|++++|||||++||+.+++.+.+.|+++. +++|+|+++|+++. ...+|++++|++ |+++..|+.
T Consensus 494 ~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~-G~i~~~g~~ 557 (574)
T PRK11160 494 APLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDN-GQIIEQGTH 557 (574)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeC-CeEEEeCCH
Confidence 99999999999999999999999999885 48999999999863 456999999986 999999985
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=284.45 Aligned_cols=194 Identities=15% Similarity=0.215 Sum_probs=152.2
Q ss_pred EEEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch---h
Q 042733 27 YISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ---E 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~---~ 89 (531)
.++++|++++|+.+ .+.+|+++|+.+.+| |||||||+|+|+|..++ +..+|+|.++|.+... .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 46777777777421 235777777666655 99999999999997653 1257999999976532 1
Q ss_pred ---hhc-ceEEEEecCCC--CCCCCcHHhHHH------------HHHHHHHHHHHhcCCchh---hhccH-----HHHHH
Q 042733 90 ---TFA-RILGYCEQNDI--HSPHDTLYDFTH------------CLYMFIEEGMELVELNPF---RQALF-----EQRKR 143 (531)
Q Consensus 90 ---~~~-~~igyv~Q~~~--~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~---~~~~~-----GerqR 143 (531)
..+ +.+||++|++. +.+.+|+.++.. ....++++.++.+++.+. .++.+ |||||
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qr 164 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQR 164 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHH
Confidence 122 57999999864 566678877521 123457788999999652 34433 99999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+|||||+.+|++|+|||||+|||+.++..+.++|++++++ |.|||++||+++ .+...||++++|++ |++++.|+++
T Consensus 165 v~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~-G~i~~~g~~~ 242 (529)
T PRK15134 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQN-GRCVEQNRAA 242 (529)
T ss_pred HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999999999999999875 899999999987 46778999999996 9999988764
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=283.27 Aligned_cols=192 Identities=20% Similarity=0.276 Sum_probs=157.1
Q ss_pred eEEEEEeEEEEEeC---CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEc-Ccc---cch-
Q 042733 26 HYISLNEIVYSVDM---PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVS-GYP---EKQ- 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~---~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~-g~~---~~~- 88 (531)
..|+++|++++|+. +.+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++ |.+ ...
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCcccccccc
Confidence 46999999999952 2346999999888777 99999999999998653 46899986 532 110
Q ss_pred -----hhhcceEEEEecCCCCCCCCcHHhHHHH----------HHHHHHHHHHhcCCch-----hhhccH-----HHHHH
Q 042733 89 -----ETFARILGYCEQNDIHSPHDTLYDFTHC----------LYMFIEEGMELVELNP-----FRQALF-----EQRKR 143 (531)
Q Consensus 89 -----~~~~~~igyv~Q~~~~~~~ltv~e~~~~----------~~~~~~~~l~~l~l~~-----~~~~~~-----GerqR 143 (531)
...++.+||++|++.+++.+||.|+... ....+++.++.+++.+ ..++.+ |||||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 1234569999999888899999987321 2235677889999964 345544 99999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+||+||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++||+++ .+.+.||++++|++ |+++..|++
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIGDP 512 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999865 899999999987 57788999999986 999988875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-31 Score=297.14 Aligned_cols=189 Identities=24% Similarity=0.362 Sum_probs=157.2
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++|+|+..++++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+|+
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~l~~~~~~~lr~ 539 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVDIRQIDPADLRR 539 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEhhhCCHHHHHh
Confidence 469999999999755567999999999988 99999999999998663 4699999998754 346788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~ 152 (531)
.++||+|++.++. .|++|+-. ...+.+.++++..++.+..+ .+.|||||++|||||++
T Consensus 540 ~i~~v~Q~~~lf~-~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~ 618 (694)
T TIGR03375 540 NIGYVPQDPRLFY-GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR 618 (694)
T ss_pred ccEEECCChhhhh-hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999998775 69999821 12344556666666544322 22389999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++++||||||+||+.+.+++.+.|+++. +++|+|++||+++ ....||+|++|++ |+++..|+.
T Consensus 619 ~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~-G~i~e~G~~ 683 (694)
T TIGR03375 619 DPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN-GRIVADGPK 683 (694)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC-CEEEeeCCH
Confidence 999999999999999999999999999876 4799999999986 4578999999986 999999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=250.26 Aligned_cols=185 Identities=17% Similarity=0.189 Sum_probs=145.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++|++++|+...+.+++++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++.
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA--EEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEhHHCCHHHHHhh
Confidence 57899999999643347999999988776 99999999999998653 46899999976432 234677
Q ss_pred EEEEecCCCCCCCCcHHhHHHH----HHHHHHHHHHhcCCch-hhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHC----LYMFIEEGMELVELNP-FRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDAR 169 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~----~~~~~~~~l~~l~l~~-~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~ 169 (531)
++|++|++.+++ .|++|+... ....+.+.++ +.. ....+.|||||++|||+|+.+|++++|||||+|||+.
T Consensus 84 i~~v~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~l~---~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 159 (207)
T cd03369 84 LTIIPQDPTLFS-GTIRSNLDPFDEYSDEEIYGALR---VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYA 159 (207)
T ss_pred EEEEecCCcccC-ccHHHHhcccCCCCHHHHHHHhh---ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence 999999987776 599887321 1112233333 322 2333449999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 170 AATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 170 ~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++..+.+.|+++. +|+|+|++||+++. +. .+|++++|++ |+++..|++
T Consensus 160 ~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v~~l~~-g~i~~~g~~ 207 (207)
T cd03369 160 TDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKILVMDA-GEVKEYDHP 207 (207)
T ss_pred HHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEEC-CEEEecCCC
Confidence 9999999999985 48999999999873 44 4899999986 999888763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=260.73 Aligned_cols=191 Identities=20% Similarity=0.224 Sum_probs=148.7
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
...++++|++++|+...+.+|+++|+.++|| |||||||+|+|+|..++ .+|++.++|.+... ...+
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI--FDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC--CCCeEEECCEEhhhCCHHHHh
Confidence 3458999999999643357999999999887 99999999999998653 46899999976532 3456
Q ss_pred ceEEEEecCCCCCCCCcHHhHHHH----HHHHHHHHHHhcCCch-----------hh-----hccHHHHHHHHHHHHHhh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTHC----LYMFIEEGMELVELNP-----------FR-----QALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~~----~~~~~~~~l~~l~l~~-----------~~-----~~~~GerqRv~iA~aL~~ 152 (531)
+.++|++|++.+++ .|++++... ....+.+.++..++.+ .. +.+.|||||++|||+|+.
T Consensus 95 ~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 78999999987765 588876210 0112233333333322 21 223399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|++++|||||+|||+.++..+.+.++++. ++.|||++||+++. +. .||++++|++ |+++..|+++
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~-G~i~~~g~~~ 239 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSR-GILVECDTPE 239 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999874 48999999999874 44 4999999996 9999988753
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=275.08 Aligned_cols=194 Identities=19% Similarity=0.294 Sum_probs=160.5
Q ss_pred EEEEEeEEEEEeCCCc--cccccEEEEEcCC---------CchHHHHHHHHhCCCCCc--eEEEEEEEcCcccc---hh-
Q 042733 27 YISLNEIVYSVDMPQI--GDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG--YITRNITVSGYPEK---QE- 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~--~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g--~~~G~i~~~g~~~~---~~- 89 (531)
.|+++||++.|..... .+++|||+.+.|| ||||||+.++|.|..+.+ ..+|+|.++|.+.. ..
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5788898888875433 4899999999888 999999999999976543 35799999997532 11
Q ss_pred ---hhcceEEEEecCCC--CCCCCcHHhH------------HHHHHHHHHHHHHhcCCchhhhc--cH-----HHHHHHH
Q 042733 90 ---TFARILGYCEQNDI--HSPHDTLYDF------------THCLYMFIEEGMELVELNPFRQA--LF-----EQRKRLT 145 (531)
Q Consensus 90 ---~~~~~igyv~Q~~~--~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~~~~~--~~-----GerqRv~ 145 (531)
...+.++|++|++. +-|-+|+.+. ..+..+++.+.++.+++.+.... .. ||||||.
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~ 164 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVM 164 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHH
Confidence 23468999999964 5566777654 23345678889999999776554 33 9999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|++|||+.. +.+.||||++|.+ |+++..|+++
T Consensus 165 iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V-va~~aDrv~Vm~~-G~iVE~G~~~ 240 (539)
T COG1123 165 IAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYK-GEIVETGPTE 240 (539)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH-HHHhcCeEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999999999999999986 49999999999974 7789999999996 9999999874
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=249.21 Aligned_cols=174 Identities=22% Similarity=0.244 Sum_probs=141.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~~ 94 (531)
++++|++++|+ ++.+|+|+|+.+++| |||||||+|+|+|..+..+.+|++.++|.+... .. .++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVG--GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeC--CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 36788998885 356889999888877 999999999999973101256899999986532 12 2345
Q ss_pred EEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV 174 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i 174 (531)
++|++|++.+++..+++++. +.. ....+.|||||++|||+|+.+|++++|||||+|||+.++..+
T Consensus 79 i~~v~q~~~~~~~~~~~~~l-----------~~~----~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l 143 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL-----------RYV----NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLV 143 (200)
T ss_pred EEEeecChhhccCccHHHHH-----------hhc----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 99999998888888887643 110 023445999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCchHHHh-ccCeEEEEccCceeeecCC
Q 042733 175 IRMVRNTVDMGRTVVCTIHQPSIDIFY-SFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 175 ~~~L~~l~~~g~tvi~~~H~~~~~i~~-~~d~v~lL~~~G~~v~~G~ 220 (531)
.+.|++++++|+|||++||+++ .+.. .+|++++|++ |+++..|+
T Consensus 144 ~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~~~ 188 (200)
T cd03217 144 AEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYD-GRIVKSGD 188 (200)
T ss_pred HHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEEC-CEEEEEcc
Confidence 9999999877899999999987 4555 6999999986 99999885
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=272.30 Aligned_cols=193 Identities=22% Similarity=0.350 Sum_probs=165.0
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhh
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETF 91 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~ 91 (531)
+..++++|++|+|+ ..++|++||+.+.|| |||||||+|+|+|..++ .+|+|.++|.+... ...
T Consensus 6 ~~ll~~~~i~K~Fg--gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p--~~G~I~~~G~~~~~~sp~~A~ 81 (500)
T COG1129 6 PPLLELRGISKSFG--GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP--DSGEILIDGKPVAFSSPRDAL 81 (500)
T ss_pred cceeeeecceEEcC--CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC--CCceEEECCEEccCCCHHHHH
Confidence 34578999999995 568999999998888 99999999999997653 57999999987531 234
Q ss_pred cceEEEEecCCCCCCCCcHHhH---------------HHHHHHHHHHHHHhcCCchhhhc-----cHHHHHHHHHHHHHh
Q 042733 92 ARILGYCEQNDIHSPHDTLYDF---------------THCLYMFIEEGMELVELNPFRQA-----LFEQRKRLTVAVEFV 151 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~~ltv~e~---------------~~~~~~~~~~~l~~l~l~~~~~~-----~~GerqRv~iA~aL~ 151 (531)
..-|+.|.|+..+.|++||.|| .........++++.+++....++ .+||||-|+|||||.
T Consensus 82 ~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~ 161 (500)
T COG1129 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALS 161 (500)
T ss_pred hCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHh
Confidence 5679999999999999999998 13345667788998887422333 448999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC-CC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL-GP 223 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~-~~ 223 (531)
.++++|+|||||+.|+....+.+++.+++++++|.+||++||.++ |+++.|||+.+|.+ |+.+..++. ++
T Consensus 162 ~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~~~~~~~~ 232 (500)
T COG1129 162 FDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVGTRPTAAE 232 (500)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEeeecccccC
Confidence 999999999999999999999999999999999999999999987 79999999999997 999998883 44
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=252.08 Aligned_cols=170 Identities=25% Similarity=0.374 Sum_probs=142.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCC--CCCcHHhHHH---------
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHS--PHDTLYDFTH--------- 115 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~--~~ltv~e~~~--------- 115 (531)
.+.+.+|+||||||||+|+|+|..++ .+|+|.++|.+.. ..++.++|++|++.++ ...|+.++..
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~ 82 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLIPP--AKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGW 82 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcccccccc
Confidence 57899999999999999999997653 4689999998653 2456799999997653 3478877521
Q ss_pred ------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 042733 116 ------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM 184 (531)
Q Consensus 116 ------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~ 184 (531)
.....+.+.++.+++.+..++.+ |||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~ 162 (223)
T TIGR03771 83 LRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA 162 (223)
T ss_pred ccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence 12245777889999987666655 9999999999999999999999999999999999999999999877
Q ss_pred CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 185 GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 185 g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
|+|+|++||+++ ++.+.||+++++ + |++++.|+.++
T Consensus 163 ~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~ 198 (223)
T TIGR03771 163 GTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQ 198 (223)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHH
Confidence 999999999987 577889999999 6 89999998653
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-31 Score=272.97 Aligned_cols=190 Identities=22% Similarity=0.354 Sum_probs=154.9
Q ss_pred cceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhh
Q 042733 24 EPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETF 91 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~ 91 (531)
.+-.|+++|+++.|+ +++++|+++|++++.| ||||||++|+|.+..+ .+|+|.++|.+.++ +.+
T Consensus 348 ~~~~I~F~dV~f~y~-~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG-PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred CCCcEEEEeeEEEeC-CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCeeHhhhChHHh
Confidence 345699999999997 4556999999999888 9999999999999765 46999999998643 568
Q ss_pred cceEEEEecCCCCCCCCcHHhHH-----HHHHHHHHHHHHhcCCchhhhcc-------H---------HHHHHHHHHHHH
Q 042733 92 ARILGYCEQNDIHSPHDTLYDFT-----HCLYMFIEEGMELVELNPFRQAL-------F---------EQRKRLTVAVEF 150 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~~ltv~e~~-----~~~~~~~~~~l~~l~l~~~~~~~-------~---------GerqRv~iA~aL 150 (531)
|+.|||||||..++ +.|+.++. ....+.+-++.+..++.+.-.+. + ||||||++|||+
T Consensus 424 R~~Ig~VPQd~~LF-ndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~ 502 (591)
T KOG0057|consen 424 RQSIGVVPQDSVLF-NDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF 502 (591)
T ss_pred hhheeEeCCccccc-chhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHH
Confidence 89999999987665 67888771 11123344455555554432222 2 899999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+.||+|+++|||||.||..+.+++++.+.+. ..|+|+|++.|+.+ ....||+|+++++ |++...|+.+
T Consensus 503 lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~l~n-G~v~e~gth~ 570 (591)
T KOG0057|consen 503 LKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIVLDN-GTVKEYGTHS 570 (591)
T ss_pred hcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEEEEC-CeeEEeccHH
Confidence 9999999999999999999999999999983 45899999999976 5778999999996 9999999853
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=283.22 Aligned_cols=196 Identities=18% Similarity=0.274 Sum_probs=159.3
Q ss_pred eEEEEEeEEEEEeC-CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhh
Q 042733 26 HYISLNEIVYSVDM-PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETF 91 (531)
Q Consensus 26 ~~l~~~~ls~~~~~-~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~ 91 (531)
..|+++|+++.|+. +++.+|+|+|+.+.+| |||||||+|+|+|..++ ..+|+|.++|.+... ...
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHH
Confidence 35899999998842 2346899999888877 99999999999997541 136899999875421 223
Q ss_pred cceEEEEecCC---CCCCCCcHHhHHH----------------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHH
Q 042733 92 ARILGYCEQND---IHSPHDTLYDFTH----------------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLTV 146 (531)
Q Consensus 92 ~~~igyv~Q~~---~~~~~ltv~e~~~----------------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~i 146 (531)
++.++|++|++ .+++.+|+.|+.. .....+++.++.+++. +..++.+ ||||||+|
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence 55699999985 4677889988621 0123467789999996 4555544 99999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPS 224 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~ 224 (531)
|++|+.+|++|+|||||+|||+.+++.+.++|++++++|+|||++|||++ ++.+.||++++|++ |+++..|++++.
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 492 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHNL 492 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEeccccC
Confidence 99999999999999999999999999999999999888999999999987 57789999999986 999999887643
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-31 Score=247.72 Aligned_cols=161 Identities=28% Similarity=0.404 Sum_probs=130.1
Q ss_pred EEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEEE
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGY 97 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~igy 97 (531)
++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++.++|
T Consensus 2 ~~~l~~~~~--~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 2 VENLSVGYG--GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred eeEEEEEEC--CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCcCCHHHHHHHHhH
Confidence 567777774 245777777777766 99999999999998653 46899999976532 234556888
Q ss_pred EecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhcc-----HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 042733 98 CEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQAL-----FEQRKRLTVAVEFVANPSIISRDEPISGLDARAAT 172 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~-----~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~ 172 (531)
++| .++.+++.+..++. .|||||++|||+|+.+|++++|||||+|||+.++.
T Consensus 78 ~~q-----------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~ 134 (180)
T cd03214 78 VPQ-----------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQI 134 (180)
T ss_pred HHH-----------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 887 44555665544443 39999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 173 TVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 173 ~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
.+.+.|++++++ |.|+|++||+++ ++.+.||++++|++ |++++.|
T Consensus 135 ~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~~~ 180 (180)
T cd03214 135 ELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKD-GRIVAQG 180 (180)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999876 899999999987 46688999999986 8887654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-31 Score=236.40 Aligned_cols=185 Identities=22% Similarity=0.304 Sum_probs=148.9
Q ss_pred EEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hh
Q 042733 28 ISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~ 90 (531)
|++++++++++... ..||++|++.+.+| ||||||||-+++|+..+ .+|+|.+.|.+... ..
T Consensus 7 i~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred eehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHH
Confidence 45556655554322 24666776666655 99999999999998653 46899999987531 12
Q ss_pred -hcceEEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhC
Q 042733 91 -FARILGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVAN 153 (531)
Q Consensus 91 -~~~~igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~ 153 (531)
..+.+|+|+|...+.|++|..|+. ........+.++.+||.+..+.++ ||+|||+||||++.+
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~ 164 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR 164 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence 346899999999999999999981 122345778899999987766655 899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
|++||.||||-+||..+..++.++|-.+.+ .|.|.|++||||. +...|||.+-|.. |+++.
T Consensus 165 P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 165 PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLVE 226 (228)
T ss_pred CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceecc
Confidence 999999999999999999999999999886 4999999999986 5678999999986 88864
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=252.15 Aligned_cols=177 Identities=27% Similarity=0.286 Sum_probs=135.8
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
+.++++++.|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .
T Consensus 23 l~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~--~------- 89 (224)
T cd03220 23 LGILGRKGEVG--EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL--L------- 89 (224)
T ss_pred hhhhhhhhhcC--CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh--h-------
Confidence 44555555553 244666666555555 99999999999998653 47999999875321 1
Q ss_pred ecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 99 EQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
.+...+.+.+|++|+.. .....+++.++.+++.+..++.+ |||||++|||+|+.+|++++||||
T Consensus 90 ~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 169 (224)
T cd03220 90 GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEV 169 (224)
T ss_pred cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 11223456788888621 11234567788889887666655 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 163 ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|+|||+.+++.+.+.|++++++|+|||++||+++ ++...+|++++|++ |+++..|
T Consensus 170 ~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 170 LAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999999999877899999999986 56778999999986 9988765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=232.45 Aligned_cols=190 Identities=20% Similarity=0.290 Sum_probs=158.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCccc-------ch--
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPE-------KQ-- 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~-------~~-- 88 (531)
.|+++++++.|+ ..++|.|+++....| |||||||+|.|.=+..+ .+|+..+.|... ..
T Consensus 2 sirv~~in~~yg--~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p--~sg~l~ia~~~fd~s~~~~~k~i 77 (242)
T COG4161 2 SIQLNGINCFYG--AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred ceEEcccccccc--cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC--CCCeEEecccccccccCccHHHH
Confidence 468899999985 467888888765544 99999999999875321 246666655421 11
Q ss_pred hhhcceEEEEecCCCCCCCCcHHhH------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHh
Q 042733 89 ETFARILGYCEQNDIHSPHDTLYDF------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFV 151 (531)
Q Consensus 89 ~~~~~~igyv~Q~~~~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~ 151 (531)
..+|+.+|+|+|+..++|++||.|+ +.+.+.+..++++.+.|.+.+|+.. ||+|||+|||||+
T Consensus 78 ~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralm 157 (242)
T COG4161 78 RDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHh
Confidence 3467889999999999999999998 3344566788999999999999876 9999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|++|++||||+.|||+-..++.+++++++..|.|-+++||..+. ....+.+|+.|.+ |+++..|+.+
T Consensus 158 mkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme~-g~ive~g~a~ 226 (242)
T COG4161 158 MEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYMEN-GHIVEQGDAS 226 (242)
T ss_pred cCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeeec-CeeEeecchh
Confidence 9999999999999999999999999999999999999999998763 3457899999986 9999999853
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=246.79 Aligned_cols=174 Identities=22% Similarity=0.216 Sum_probs=143.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ig 96 (531)
|+++|++++|+ ++++|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ..+++.++
T Consensus 2 l~~~~l~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYH--DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP--EKGEILFERQSIKKDLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeC--CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeeEEECCCccccCHHHHHhheE
Confidence 67889998885 356899999888777 99999999999998653 46899999986532 34567899
Q ss_pred EEecCCCCCCCCcHHhHHHH------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 042733 97 YCEQNDIHSPHDTLYDFTHC------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISG 165 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~~------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsg 165 (531)
|++|+..+++..|+.++... ....+++.++.+++.+..++.+ |||||++|||+++.+|++++|||||+|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~ 157 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVA 157 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 99999888889999987321 1235778889888876655544 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEE
Q 042733 166 LDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELF 207 (531)
Q Consensus 166 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~ 207 (531)
||+.++..+.+.|++++++|.|||++||++.. .+.+|..+
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 158 LDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 99999999999999987779999999999753 45566543
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=247.77 Aligned_cols=173 Identities=22% Similarity=0.236 Sum_probs=139.2
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEEE
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILGY 97 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~igy 97 (531)
+++|+++.|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ..+++.++|
T Consensus 2 ~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (198)
T TIGR01189 2 AARNLACSRG--ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAEQRDEPHRNILY 77 (198)
T ss_pred EEEEEEEEEC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccchHHhhhheEE
Confidence 5677777774 346777777777666 99999999999997653 46899999976432 234567999
Q ss_pred EecCCCCCCCCcHHhHHHH-------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 042733 98 CEQNDIHSPHDTLYDFTHC-------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISG 165 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~-------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsg 165 (531)
++|++.+++.+|+.++... ....+++.++.+++.+..++.+ |||||++||++++.+|++++|||||+|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999888888999987321 1234677889999987766655 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEE
Q 042733 166 LDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFL 208 (531)
Q Consensus 166 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~l 208 (531)
||+.++..+.+.|++++++|.|+|++||++.. ..|++++.
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 158 LDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 99999999999999998789999999999752 24566654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=287.00 Aligned_cols=192 Identities=14% Similarity=0.194 Sum_probs=154.2
Q ss_pred EEEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCccc---------
Q 042733 27 YISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPE--------- 86 (531)
Q Consensus 27 ~l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~--------- 86 (531)
.|+++|++++|+.. ..++|+|+|+.+.+| |||||||+|+|+|..++ .+|.|.++|...
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p--~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ--AGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCeEEEECCEEeccccccccc
Confidence 58999999999532 236899999888877 99999999999998643 357777766421
Q ss_pred ----ch---hhh-cceEEEEecCC--CCCCCCcHHhHHH------------HHHHHHHHHHHhcCCch---hhhccH---
Q 042733 87 ----KQ---ETF-ARILGYCEQND--IHSPHDTLYDFTH------------CLYMFIEEGMELVELNP---FRQALF--- 138 (531)
Q Consensus 87 ----~~---~~~-~~~igyv~Q~~--~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~---~~~~~~--- 138 (531)
.. ... ++.+|||+|++ .+++.+||.|+.. ....++.++++.+|+.+ ..++.+
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 11 112 24699999997 5778899998721 12346778899999953 344433
Q ss_pred --HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 139 --EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 139 --GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
||||||+||+||+.+|++|||||||+|||+.++.+++++|++++++ |+|||++||+++ .+.+.||++++|++ |++
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~vl~~-G~i 247 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVLVMYQ-GEA 247 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEeeC-Cee
Confidence 9999999999999999999999999999999999999999999865 999999999987 57788999999996 999
Q ss_pred eecCCCC
Q 042733 216 ISVGPLG 222 (531)
Q Consensus 216 v~~G~~~ 222 (531)
+..|+++
T Consensus 248 ~~~g~~~ 254 (623)
T PRK10261 248 VETGSVE 254 (623)
T ss_pred cccCCHH
Confidence 9988764
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=275.58 Aligned_cols=189 Identities=21% Similarity=0.309 Sum_probs=160.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~ 94 (531)
.++++|++|+|+.++.++|+|+|+.+.+| |||||||++.|+|..++ .+|+|..+|.+.. +..+++.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~--~~G~i~~~g~~~~~l~~~~~~e~ 413 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP--QQGSITLNGVEIASLDEQALRET 413 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC--CCCeeeECCcChhhCChhhHHHH
Confidence 68999999999987778999999999999 99999999999997653 4799999998753 3457788
Q ss_pred EEEEecCCCCCCCCcHHhHH-----HHHHHHHHHHHHhcCCchhhhccH----------------HHHHHHHHHHHHhhC
Q 042733 95 LGYCEQNDIHSPHDTLYDFT-----HCLYMFIEEGMELVELNPFRQALF----------------EQRKRLTVAVEFVAN 153 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~-----~~~~~~~~~~l~~l~l~~~~~~~~----------------GerqRv~iA~aL~~~ 153 (531)
+++++|...+ ..-|+++|- ....+.+.++++++||++...... |||||++|||+|++|
T Consensus 414 i~vl~Qr~hl-F~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d 492 (573)
T COG4987 414 ISVLTQRVHL-FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD 492 (573)
T ss_pred HhhhccchHH-HHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence 9999998655 467999882 122345677888888887654442 899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
.++++|||||.|||+.+.+++++.|.+..+ |+|+|++||+... .+.||+|++|++ |+++..|..+
T Consensus 493 apl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~-Gkiie~G~~~ 557 (573)
T COG4987 493 APLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDN-GKIIEEGTHA 557 (573)
T ss_pred CCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEEC-CeeeecCCHH
Confidence 999999999999999999999999988654 8999999999863 678999999996 9999999864
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-30 Score=254.68 Aligned_cols=166 Identities=19% Similarity=0.213 Sum_probs=134.0
Q ss_pred cccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhH
Q 042733 43 GDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDF 113 (531)
Q Consensus 43 ~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~ 113 (531)
.+|+++|+.+.|| |||||||+++|+|..++ .+|+|.++|. ++++.|+..+.+.+|+.++
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~I~~~g~----------~~~~~~~~~~~~~~tv~en 105 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGKVDRNGE----------VSVIAISAGLSGQLTGIEN 105 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCE----------EeEEecccCCCCCCcHHHH
Confidence 4666666666555 99999999999998653 4689988874 3566777666777888876
Q ss_pred HH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 042733 114 TH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRM 177 (531)
Q Consensus 114 ~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~ 177 (531)
.. .....++++++.+++.+..++.+ |||||++||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~ 185 (264)
T PRK13546 106 IEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDK 185 (264)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHH
Confidence 21 11223455677778877665544 999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 178 VRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 178 L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++++++|+|||++||++. ++.+.||++++|++ |+++..|+.+
T Consensus 186 L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~ 228 (264)
T PRK13546 186 IYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GKLKDYGELD 228 (264)
T ss_pred HHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CEEEEeCCHH
Confidence 9999877999999999976 56778999999986 9999988753
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=283.29 Aligned_cols=191 Identities=19% Similarity=0.250 Sum_probs=157.6
Q ss_pred eEEEEEeEEEEEeC---------CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc
Q 042733 26 HYISLNEIVYSVDM---------PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK 87 (531)
Q Consensus 26 ~~l~~~~ls~~~~~---------~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~ 87 (531)
..++++|+++.|+. +++.+|+++|+.+.+| |||||||+|+|+|..+ .+|+|.++|.+..
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~ 350 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLH 350 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEcc
Confidence 35899999999952 1346999999888777 9999999999999864 3689999997642
Q ss_pred h---h---hhcceEEEEecCC--CCCCCCcHHhHHHH-------------HHHHHHHHHHhcCCc-hhhhccH-----HH
Q 042733 88 Q---E---TFARILGYCEQND--IHSPHDTLYDFTHC-------------LYMFIEEGMELVELN-PFRQALF-----EQ 140 (531)
Q Consensus 88 ~---~---~~~~~igyv~Q~~--~~~~~ltv~e~~~~-------------~~~~~~~~l~~l~l~-~~~~~~~-----Ge 140 (531)
. . .+++.+||++|++ .+++.+||.|+... ....+++.++.+++. +..++.+ ||
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 430 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQ 430 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHH
Confidence 1 1 2356799999996 47788999987211 124567789999996 4555544 99
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 141 RKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 141 rqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
||||+||++|+.+|++|+|||||+|||+.+++.+++.|++++++ |+|||++||+++ .+.+.||++++|++ |+++..|
T Consensus 431 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~ 508 (529)
T PRK15134 431 RQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQG 508 (529)
T ss_pred HHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999999875 899999999987 47788999999986 9999988
Q ss_pred CC
Q 042733 220 PL 221 (531)
Q Consensus 220 ~~ 221 (531)
++
T Consensus 509 ~~ 510 (529)
T PRK15134 509 DC 510 (529)
T ss_pred CH
Confidence 75
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=295.31 Aligned_cols=187 Identities=21% Similarity=0.296 Sum_probs=154.8
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++|+|+ .++++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.+||.+.. ...+|+
T Consensus 472 ~~I~~~~vsf~y~-~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~i~~~~~~~lr~ 548 (708)
T TIGR01193 472 GDIVINDVSYSYG-YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFSLKDIDRHTLRQ 548 (708)
T ss_pred CcEEEEEEEEEcC-CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEEHHHcCHHHHHH
Confidence 3689999999996 3457999999999988 99999999999998663 4699999998754 346788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH------HHHHHHHHHHHhcCCchhhh-------c---------cHHHHHHHHHHHHHh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH------CLYMFIEEGMELVELNPFRQ-------A---------LFEQRKRLTVAVEFV 151 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~------~~~~~~~~~l~~l~l~~~~~-------~---------~~GerqRv~iA~aL~ 151 (531)
.+|||+|++.+++ -|++|+.. ...+.+.++++..++.+..+ + +.|||||++||||++
T Consensus 549 ~i~~v~Q~~~lf~-gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall 627 (708)
T TIGR01193 549 FINYLPQEPYIFS-GSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALL 627 (708)
T ss_pred heEEEecCceehh-HHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999988775 59999832 11234556666666544322 2 228999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|++|+||||||+||+.+.+.+.+.|+++ +|+|+|+++|+++ ....+|++++|++ |+++..|+.
T Consensus 628 ~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~-G~i~~~G~~ 692 (708)
T TIGR01193 628 TDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH-GKIIEQGSH 692 (708)
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999875 4799999999986 4578999999986 999999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=282.17 Aligned_cols=188 Identities=16% Similarity=0.249 Sum_probs=154.7
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~ 92 (531)
..++++|+++.+. .+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...+
T Consensus 264 ~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~ 337 (510)
T PRK09700 264 TVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVK 337 (510)
T ss_pred cEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHH
Confidence 3689999997642 3789888777776 99999999999997653 46899999975421 2245
Q ss_pred ceEEEEecC---CCCCCCCcHHhHHH--------------------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHH
Q 042733 93 RILGYCEQN---DIHSPHDTLYDFTH--------------------CLYMFIEEGMELVELN-PFRQALF-----EQRKR 143 (531)
Q Consensus 93 ~~igyv~Q~---~~~~~~ltv~e~~~--------------------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqR 143 (531)
+.+||++|+ ..+++.+|+.|+.. .....++++++.+++. +..++.+ |||||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 417 (510)
T PRK09700 338 KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQK 417 (510)
T ss_pred CCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHH
Confidence 679999998 45788899988721 0113467789999996 5566654 99999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||++ ++...||++++|++ |+++..++.
T Consensus 418 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 418 VLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred HHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 99999999999999999999999999999999999999888999999999987 57788999999986 999988765
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=252.33 Aligned_cols=183 Identities=20% Similarity=0.287 Sum_probs=144.7
Q ss_pred eEEEEEeEEEEEeCCC-ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 26 HYISLNEIVYSVDMPQ-IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~-~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
..++++|++++|+... ..+|+++|+.+.+| |||||||+++|+|..++ .+|++.++|.+... ...+
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP--QGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCCchHHcCHHHHH
Confidence 4579999999996422 36999999888877 99999999999998653 46899999976432 2345
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH---------HHH-----HHHHHHHHhc--CCchhhhccH-----HHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH---------CLY-----MFIEEGMELV--ELNPFRQALF-----EQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~---------~~~-----~~~~~~l~~l--~l~~~~~~~~-----GerqRv~iA~aL~ 151 (531)
+.++|++|++.+++ .|++|+.. ... ..+++.++.+ |+.+..+..+ ||||||+||++|+
T Consensus 88 ~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 88 SKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred hhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 67999999987765 58887621 000 1134556666 6665444433 9999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ ++ ..||++++|++ |++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~-g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLDG-GRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEecC-CcC
Confidence 99999999999999999999999999999865 689999999987 45 45999999986 763
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=253.71 Aligned_cols=186 Identities=22% Similarity=0.323 Sum_probs=141.7
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~i 95 (531)
++++|++++|+. .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++.+
T Consensus 1 l~~~~l~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~v~~~g~~~~~~~~~~~~~~i 77 (236)
T cd03253 1 IEFENVTFAYDP-GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV--SSGSILIDGQDIREVTLDSLRRAI 77 (236)
T ss_pred CEEEEEEEEeCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEhhhCCHHHHHhhE
Confidence 367788888742 245788888777766 99999999999998653 4689999997643 22356679
Q ss_pred EEEecCCCCCCCCcHHhHHHH-----HHHHHHHHHHhcCC-----------chh-----hhccHHHHHHHHHHHHHhhCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTHC-----LYMFIEEGMELVEL-----------NPF-----RQALFEQRKRLTVAVEFVANP 154 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~-----~~~~~~~~l~~l~l-----------~~~-----~~~~~GerqRv~iA~aL~~~p 154 (531)
+|++|+..+++ .|+.|+... ......+.++..++ ... .+.+.|||||++||++|+.+|
T Consensus 78 ~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p 156 (236)
T cd03253 78 GVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP 156 (236)
T ss_pred EEECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999987775 699887211 01112222232232 221 123349999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++++|||||+|||+.++..+.+.|+++++ |+|||++||+++ .+ ..||++++|++ |+++..|+.
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~~-g~i~~~~~~ 219 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLKD-GRIVERGTH 219 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEEC-CEEEeeCCH
Confidence 99999999999999999999999999877 999999999987 34 45999999996 999988764
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-30 Score=272.71 Aligned_cols=202 Identities=19% Similarity=0.223 Sum_probs=162.2
Q ss_pred CchhhhhhhcccCCCccccccceEEEEEeEEEEEeCCC-ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc
Q 042733 4 MTEAAIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQ-IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG 73 (531)
Q Consensus 4 m~~~~i~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~-~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g 73 (531)
|+ ..++++|++++.... ...+++++||++.++.+. +.+|+|+|+.+.+| |||||||+|+|+|..++
T Consensus 1 m~-~~i~~~n~tk~y~~~--~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P- 76 (549)
T PRK13545 1 MN-YKVKFEHVTKKYKMY--NKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP- 76 (549)
T ss_pred CC-ceEEEEeeeeecccc--ccceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC-
Confidence 66 468999999985533 233689999999986432 36899999888877 99999999999998653
Q ss_pred eEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH----
Q 042733 74 YITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF---- 138 (531)
Q Consensus 74 ~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~---- 138 (531)
.+|+|.++|.+. ++.+...+.+.+|++|+.. ...+.++++++.+++.+..++.+
T Consensus 77 -~sGeI~I~G~~~----------~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LS 145 (549)
T PRK13545 77 -NKGTVDIKGSAA----------LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYS 145 (549)
T ss_pred -CceEEEECCEee----------eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCC
Confidence 468999988541 1222334556678888621 12234567888899987766655
Q ss_pred -HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 139 -EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 139 -GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.||++++|++ |+++.
T Consensus 146 GGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~ 223 (549)
T PRK13545 146 SGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKE 223 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999878999999999987 57788999999986 99999
Q ss_pred cCCCC
Q 042733 218 VGPLG 222 (531)
Q Consensus 218 ~G~~~ 222 (531)
.|+++
T Consensus 224 ~G~~~ 228 (549)
T PRK13545 224 YGDIK 228 (549)
T ss_pred ECCHH
Confidence 99864
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=250.81 Aligned_cols=180 Identities=18% Similarity=0.232 Sum_probs=141.5
Q ss_pred EEEEeEEEEEeCC-----CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcC--c--ccc--
Q 042733 28 ISLNEIVYSVDMP-----QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSG--Y--PEK-- 87 (531)
Q Consensus 28 l~~~~ls~~~~~~-----~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g--~--~~~-- 87 (531)
++++|++++|+.. +..+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++| . +..
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAWVDLAQA 79 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCccchhhc
Confidence 5788888888521 135888888887766 99999999999998653 358898873 2 221
Q ss_pred -hh---h-hcceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCch-hhhccH-----HHHHHHH
Q 042733 88 -QE---T-FARILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNP-FRQALF-----EQRKRLT 145 (531)
Q Consensus 88 -~~---~-~~~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~ 145 (531)
.. . .++.++|++|++.+++.+|+.|+.. ...+.+.+.++.+++.+ ..+..+ |||||++
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred CHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHH
Confidence 11 1 2356999999998999999988721 12345667888889865 334433 9999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
||++|+.+|++++|||||+|||+.+++.+.+.|++++++|+|||++||+++ .+...||+++.+.
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 999999999999999999999999999999999999877999999999965 4556899998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=238.95 Aligned_cols=149 Identities=23% Similarity=0.354 Sum_probs=127.6
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcce
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFARI 94 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~~ 94 (531)
++++|++++|+ ++++++++|+.+.|| |||||||+|+|+|..++ .+|++.++|.+... ...++.
T Consensus 1 l~~~~l~~~~~--~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~~~ 76 (163)
T cd03216 1 LELRGITKRFG--GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP--DSGEILVDGKEVSFASPRDARRAG 76 (163)
T ss_pred CEEEEEEEEEC--CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEECCcCCHHHHHhcC
Confidence 46889999885 346899999888887 99999999999998653 46899999976532 224567
Q ss_pred EEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV 174 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i 174 (531)
++|++| .+.|||||++|||+++.+|++++|||||+|||+.+++.+
T Consensus 77 i~~~~q-----------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l 121 (163)
T cd03216 77 IAMVYQ-----------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERL 121 (163)
T ss_pred eEEEEe-----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH
Confidence 999998 334999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 175 IRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 175 ~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
.+.|++++++|.|+|++||++. ++.+.||+++++++ |++++
T Consensus 122 ~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~ 162 (163)
T cd03216 122 FKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRD-GRVVG 162 (163)
T ss_pred HHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEe
Confidence 9999999877999999999976 46778999999986 88864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=259.15 Aligned_cols=191 Identities=19% Similarity=0.212 Sum_probs=152.6
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccch----
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEKQ---- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~~---- 88 (531)
+..|+++|++++|+ ++.+|+++|+.+.+| |||||||+++|+|..+. ...+|+|.++|.+...
T Consensus 43 ~~~l~i~nl~~~~~--~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYG--DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeC--CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 34689999999995 357999999988887 99999999999997531 1357999999976431
Q ss_pred -hhhcceEEEEecCCCCCCCCcHHhHHHH------------------------HHHHHHHHHHhcCCc----hhhhc---
Q 042733 89 -ETFARILGYCEQNDIHSPHDTLYDFTHC------------------------LYMFIEEGMELVELN----PFRQA--- 136 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~~~~~ltv~e~~~~------------------------~~~~~~~~l~~l~l~----~~~~~--- 136 (531)
...++.++|++|++.+++ .|++|+... ....++++++.+++. +..+.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 199 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199 (305)
T ss_pred HHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence 234568999999988776 499887221 123456677777763 22233
Q ss_pred --cHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEE-EEccCc
Q 042733 137 --LFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELF-LLKQVG 213 (531)
Q Consensus 137 --~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~-lL~~~G 213 (531)
+.|||||++||++|+++|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.||+++ +|++ |
T Consensus 200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~l~~-G 276 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVFLTG-G 276 (305)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEEecC-C
Confidence 23999999999999999999999999999999999999999999976 489999999987 4677899974 6675 9
Q ss_pred eeeecCCC
Q 042733 214 QEISVGPL 221 (531)
Q Consensus 214 ~~v~~G~~ 221 (531)
+++..|++
T Consensus 277 ~i~~~g~~ 284 (305)
T PRK14264 277 ELVEYDDT 284 (305)
T ss_pred EEEEeCCH
Confidence 99999875
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=286.71 Aligned_cols=189 Identities=21% Similarity=0.280 Sum_probs=156.8
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++++|+..++++|+|+|+.+++| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~--~~G~I~i~g~~i~~~~~~~~~~ 406 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP--DSGQILLDGHDLADYTLASLRR 406 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEeHHhcCHHHHHh
Confidence 369999999999754567999999999988 99999999999998653 3689999998753 345778
Q ss_pred eEEEEecCCCCCCCCcHHhHH------HHHHHHHHHHHHhcCCchhhhc----------------cHHHHHHHHHHHHHh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFT------HCLYMFIEEGMELVELNPFRQA----------------LFEQRKRLTVAVEFV 151 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~------~~~~~~~~~~l~~l~l~~~~~~----------------~~GerqRv~iA~aL~ 151 (531)
.++|++|++.++ ..|++|+- +...+.++++++..++.+..++ +.|||||++|||+++
T Consensus 407 ~i~~v~Q~~~lf-~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall 485 (571)
T TIGR02203 407 QVALVSQDVVLF-NDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALL 485 (571)
T ss_pred hceEEccCcccc-cccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 899999998766 56999982 1234556667777766543222 239999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ....||+|+.+++ |+++..|+.
T Consensus 486 ~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~-g~i~~~g~~ 551 (571)
T TIGR02203 486 KDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDD-GRIVERGTH 551 (571)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeC-CEEEeeCCH
Confidence 9999999999999999999999999999874 4799999999985 5678999999986 999988875
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=240.25 Aligned_cols=159 Identities=25% Similarity=0.398 Sum_probs=130.1
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~i 95 (531)
++++|++++|+..+..+++++|+.+.+| |||||||+|+|+|..++ .+|++.++|.+... ...++.+
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i 78 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILIDGVDLRDLDLESLRKNI 78 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhhhcCHHHHHhhE
Confidence 3678888888532236888888888776 99999999999998653 46899999976432 2345679
Q ss_pred EEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 042733 96 GYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVI 175 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~ 175 (531)
+|++|++.+++ .|+.|+. .+.|||||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 79 ~~~~~~~~~~~-~t~~e~l---------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~ 136 (171)
T cd03228 79 AYVPQDPFLFS-GTIRENI---------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALIL 136 (171)
T ss_pred EEEcCCchhcc-chHHHHh---------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHH
Confidence 99999987665 5776542 3459999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 176 RMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 176 ~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
+.|+++++ ++|+|++||+++ ++.. ||++++|++ |+
T Consensus 137 ~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~-g~ 171 (171)
T cd03228 137 EALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDD-GR 171 (171)
T ss_pred HHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcC-CC
Confidence 99999864 799999999987 4555 999999985 64
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=279.10 Aligned_cols=194 Identities=15% Similarity=0.247 Sum_probs=157.3
Q ss_pred eEEEEEeEEEEEeC-CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhh
Q 042733 26 HYISLNEIVYSVDM-PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETF 91 (531)
Q Consensus 26 ~~l~~~~ls~~~~~-~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~ 91 (531)
..|+++|++++|+. +++.+|+|+|+.+.+| |||||||+|+|+|..++ ..+|+|.++|.+... ...
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAI 334 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHH
Confidence 36899999998842 1346899999888777 99999999999998642 136899999976431 234
Q ss_pred cceEEEEecCC---CCCCCCcHHhHHH----------------HHHHHHHHHHHhcCCch-hhhccH-----HHHHHHHH
Q 042733 92 ARILGYCEQND---IHSPHDTLYDFTH----------------CLYMFIEEGMELVELNP-FRQALF-----EQRKRLTV 146 (531)
Q Consensus 92 ~~~igyv~Q~~---~~~~~ltv~e~~~----------------~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~i 146 (531)
++.+||++|+. .+++.+|++++.. .....+++.++.+++.+ ..++.+ ||||||+|
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHH
Confidence 56799999995 4788889988611 01234677889999863 445443 99999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++|+.+|++|+|||||+|||+.+++.+++.|++++++|.|||++|||++ ++.+.||++++|.+ |+++..++.+
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 99999999999999999999999999999999999888999999999987 57789999999986 9999877653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=285.77 Aligned_cols=188 Identities=21% Similarity=0.302 Sum_probs=153.1
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++|+|+. ++.+|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++
T Consensus 333 ~~I~~~~vsf~y~~-~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~i~~~~~~~~r~ 409 (588)
T PRK13657 333 GAVEFDDVSFSYDN-SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTDIRTVTRASLRR 409 (588)
T ss_pred CeEEEEEEEEEeCC-CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEEhhhCCHHHHHh
Confidence 36999999999973 356999999999998 99999999999998664 4689999998754 345788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhh-------h---------ccHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFR-------Q---------ALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~-------~---------~~~GerqRv~iA~aL~~ 152 (531)
.++|++|++.++. .|++|+-. ...+.+.++++..++.+.. | .+.|||||++|||+|++
T Consensus 410 ~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~ 488 (588)
T PRK13657 410 NIAVVFQDAGLFN-RSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK 488 (588)
T ss_pred heEEEecCccccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 8999999988774 69998821 1123344555555543322 1 22399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|+++.|++ |+++..|+.
T Consensus 489 ~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~-G~i~~~g~~ 553 (588)
T PRK13657 489 DPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDN-GRVVESGSF 553 (588)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999998875 4799999999985 4678999999986 999998874
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=290.83 Aligned_cols=189 Identities=24% Similarity=0.334 Sum_probs=154.7
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++|+|+..++.+|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+|+
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~idg~~i~~~~~~~~r~ 531 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGVDLAIADPAWLRR 531 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEehhhCCHHHHHH
Confidence 469999999999755567999999999988 99999999999998653 4699999998754 345788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~ 152 (531)
.++||+|++.+++ .|++|+-. ...+.+.++++..++.+..+ .+.|||||++|||||++
T Consensus 532 ~i~~v~q~~~lf~-~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 532 QMGVVLQENVLFS-RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred hCeEEccCCeehh-hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 8999999987765 69999821 11233445555555443321 22399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++++|||||++||+.++..+.+.|+++. +++|+|++||+++ ....||++++|++ |+++..|+.
T Consensus 611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~-G~i~~~g~~ 675 (694)
T TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK-GQIAESGRH 675 (694)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC-CEEEEeCCH
Confidence 999999999999999999999999999884 5899999999986 3456999999986 999999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=241.88 Aligned_cols=185 Identities=22% Similarity=0.385 Sum_probs=158.4
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcceEEEEecCCCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARILGYCEQNDIHS 105 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~igyv~Q~~~~~ 105 (531)
.++++|...+. .+++-.+|||||||||||.+++.+.+ ..+|+|.++|.+.. ...+.+.++.+-|+....
T Consensus 16 vl~~isl~i~~------g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 16 VLDDVSLDIPK------GGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred eeccceeeecC------CceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 45555555542 24566677889999999999999765 35799999998754 245677889999999888
Q ss_pred CCCcHHhH-------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 042733 106 PHDTLYDF-------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLD 167 (531)
Q Consensus 106 ~~ltv~e~-------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD 167 (531)
..+||+|. ..+.+..++++++.++|++..++.. |||||.-||+.++++.+.++||||.++||
T Consensus 88 ~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLD 167 (252)
T COG4604 88 SRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167 (252)
T ss_pred heeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccc
Confidence 99999997 3556778999999999999888876 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 168 ARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 168 ~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
...+.++++.|++++++ |+||+++.||.+. ...+.|+++-|++ |+++..|++++
T Consensus 168 mkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~e 222 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPDE 222 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHHH
Confidence 99999999999999986 9999999999985 4557899999996 99999999875
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=290.45 Aligned_cols=187 Identities=21% Similarity=0.300 Sum_probs=151.7
Q ss_pred eEEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 26 HYISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
..++++||+|+|+.. ++++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+..+ ..++
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVPLVQYDHHYLH 554 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEHHhcCHHHHH
Confidence 368999999999743 457999999999998 99999999999998663 46999999987643 4577
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhh-------c---------cHHHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQ-------A---------LFEQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~-------~---------~~GerqRv~iA~aL~ 151 (531)
+.++||+|++.++. .|++||.. ...+.+.++++..++.+..+ + +.|||||++||||++
T Consensus 555 ~~i~~v~Q~~~lF~-gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 555 RQVALVGQEPVLFS-GSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred hhceEEecCccccc-cCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 88999999988764 79999821 12344556666666544322 1 228999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|++++||||||+||+.+.+.+.+ .. ..+++|+|+++|+++ ....+|+|++|++ |+++..|+.
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~-G~ive~Gt~ 697 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKK-GSVVEMGTH 697 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEEC-CEEEEeeCH
Confidence 9999999999999999999999988 22 235899999999986 4567999999986 999999985
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=282.74 Aligned_cols=190 Identities=24% Similarity=0.352 Sum_probs=153.2
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~ 92 (531)
...++++|++|.|+. ++++|+|+|+.++|| |||||||+|.|.|..++ .+|+|.++|.+.+ ...+|
T Consensus 326 ~~~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~dI~~i~~~~lr 402 (567)
T COG1132 326 IGSIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGIDIRDISLDSLR 402 (567)
T ss_pred CCeEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEehhhcCHHHHH
Confidence 345899999999963 568999999999988 99999999999998764 4789999998764 35678
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchh-------hhc---------cHHHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPF-------RQA---------LFEQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~-------~~~---------~~GerqRv~iA~aL~ 151 (531)
+.++||+|++.++. -|+++|-. ...+.+.++++..++.+. .|+ +.|||||++||||++
T Consensus 403 ~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 403 KRIGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred HhccEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 99999999988876 89999811 111233333333322221 122 238999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|++|+||||||+||+.+...+.+.++++. +++|+|+++|+++ .+ ..+|+|++|++ |+++..|+.+
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti-~~aD~IiVl~~-G~i~e~G~h~ 548 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TI-KNADRIIVLDN-GRIVERGTHE 548 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HH-HhCCEEEEEEC-CEEEEecCHH
Confidence 9999999999999999999999999999877 5789999999986 34 44999999996 9999999863
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-30 Score=281.16 Aligned_cols=189 Identities=20% Similarity=0.281 Sum_probs=153.4
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++|++++|+..++.+|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+..+ ..+++
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~i~~~g~~~~~~~~~~~~~ 389 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV--SEGDIRFHDIPLTKLQLDSWRS 389 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEHhhCCHHHHHh
Confidence 368999999999754567999999998888 99999999999997653 46899999987532 45678
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhh----------------hccHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFR----------------QALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~----------------~~~~GerqRv~iA~aL~~ 152 (531)
.++|++|++.+++ .|++|+.. ...+.+++.++..++.+.. +.+.|||||++|||||++
T Consensus 390 ~i~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~ 468 (569)
T PRK10789 390 RLAVVSQTPFLFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL 468 (569)
T ss_pred heEEEccCCeecc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 8999999988876 59998821 1123344555555543221 122399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++++|||||++||+.+++.+.+.|+++. +|+|+|+++|+++ ....+|++++|++ |+++..|+.
T Consensus 469 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~-G~i~~~g~~ 533 (569)
T PRK10789 469 NAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQH-GHIAQRGNH 533 (569)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeC-CEEEEecCH
Confidence 999999999999999999999999999875 5899999999986 3567999999986 999999985
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=250.06 Aligned_cols=184 Identities=23% Similarity=0.308 Sum_probs=146.6
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc--hhhhcceEEEEecC-CCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK--QETFARILGYCEQN-DIHS 105 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~--~~~~~~~igyv~Q~-~~~~ 105 (531)
.++|+|+..+. ..+.|.+|||||||||+||+|+|...+ .+|.+.++|...- +..+-+.+++|.-+ ..+.
T Consensus 39 AVqdisf~IP~------G~ivgflGaNGAGKSTtLKmLTGll~p--~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~ 110 (325)
T COG4586 39 AVQDISFEIPK------GEIVGFLGANGAGKSTTLKMLTGLLLP--TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLW 110 (325)
T ss_pred hhheeeeecCC------CcEEEEEcCCCCcchhhHHHHhCcccc--CCCeEEecCcCcchhHHHHHHHHHHHhhhhheee
Confidence 67788888763 356888999999999999999997653 4689999998642 22344556666432 2232
Q ss_pred CCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 042733 106 PHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDAR 169 (531)
Q Consensus 106 ~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~ 169 (531)
..+.+.+. ....+++.+...+.+++++..+..+ |||.|+.||.+|+++|+||||||||-|||..
T Consensus 111 Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~ 190 (325)
T COG4586 111 WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVN 190 (325)
T ss_pred eechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchh
Confidence 22333332 2344567778888889886665554 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 170 AATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 170 ~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++..+.+.|++..+ ++.||+++||+.+ ++..+||||++++. |+++|.|+.+
T Consensus 191 aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~-Gqlv~dg~l~ 242 (325)
T COG4586 191 AQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTLA 242 (325)
T ss_pred HHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeC-CcEeecccHH
Confidence 99999999999986 5999999999998 79999999999996 9999999863
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=243.46 Aligned_cols=171 Identities=20% Similarity=0.288 Sum_probs=130.7
Q ss_pred EEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 28 ISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
++++||+++|+... +.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++| .+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~--~~G~i~~~g----------~i 68 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK--LSGSVSVPG----------SI 68 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCCeEEEcC----------EE
Confidence 36788888886322 36888888888777 99999999999997653 468999988 58
Q ss_pred EEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchh----------------hhccHHHHHHHHHHHHHhhCCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPF----------------RQALFEQRKRLTVAVEFVANPS 155 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~----------------~~~~~GerqRv~iA~aL~~~p~ 155 (531)
+|++|++.++ ..|++|+.. .......+.++.+++.+. .+.+.|||||++|||+|+.+|+
T Consensus 69 ~~~~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 69 AYVSQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEecCchhc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999998876 569988721 011122333333333221 2223399999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 156 IISRDEPISGLDARAATTVIR-MVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
+++|||||+|||+.+++.+.+ +++++.++|+|||++||+++ .+.. +|++++|++ |+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~-G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDN-GR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeC-CC
Confidence 999999999999999999998 56666666899999999986 3445 999999986 64
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=260.33 Aligned_cols=189 Identities=19% Similarity=0.263 Sum_probs=161.6
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc----hhhhc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK----QETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~----~~~~~ 92 (531)
..++.+++++.|+ ...++++||+++.+| |||||||+|+|.|...+ .+|+|.++|++.. ....+
T Consensus 3 ~~l~~~~itK~f~--~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P--~~GeI~v~G~~v~~~sP~dA~~ 78 (501)
T COG3845 3 PALEMRGITKRFP--GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP--DSGEIRVDGKEVRIKSPRDAIR 78 (501)
T ss_pred ceEEEeccEEEcC--CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccC--CcceEEECCEEeccCCHHHHHH
Confidence 3467888888885 456788888887777 99999999999997653 5799999998753 23456
Q ss_pred ceEEEEecCCCCCCCCcHHhH--------------HHHHHHHHHHHHHhcCCch-----hhhccHHHHHHHHHHHHHhhC
Q 042733 93 RILGYCEQNDIHSPHDTLYDF--------------THCLYMFIEEGMELVELNP-----FRQALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~--------------~~~~~~~~~~~l~~l~l~~-----~~~~~~GerqRv~iA~aL~~~ 153 (531)
..||+|.|+..+.+++||.|| ....+++++++.+..|+.- ..+..+||||||.|-++|..+
T Consensus 79 ~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 79 LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred cCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence 789999999999999999998 2344567888899988853 345556999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
|++|||||||+-|-|....++++.|++++++|+|||++||-.. |+.+.|||+.+|.+ |+++..-+
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~-Gkvvgt~~ 223 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRR-GKVVGTVD 223 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeC-CeEEeeec
Confidence 9999999999999999999999999999999999999999987 79999999999986 99876655
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=274.05 Aligned_cols=187 Identities=17% Similarity=0.271 Sum_probs=151.6
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~ 92 (531)
..++++|+++ .+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...+
T Consensus 256 ~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~ 326 (501)
T PRK10762 256 VRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLA 326 (501)
T ss_pred cEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHH
Confidence 3578888763 2577777666555 99999999999998653 46999999976431 2245
Q ss_pred ceEEEEecCC---CCCCCCcHHhHHH-----------------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHH
Q 042733 93 RILGYCEQND---IHSPHDTLYDFTH-----------------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLTV 146 (531)
Q Consensus 93 ~~igyv~Q~~---~~~~~ltv~e~~~-----------------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~i 146 (531)
+.+||++|++ .+++.+|+.|+.. .....+++.++.+++. +..++.+ ||||||+|
T Consensus 327 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~l 406 (501)
T PRK10762 327 NGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAI 406 (501)
T ss_pred CCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHH
Confidence 6799999995 4778899988621 1123467788999994 5555554 99999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
|++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.||++++|++ |+++..|++++
T Consensus 407 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 407 ARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred HHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 99999999999999999999999999999999999888999999999987 57789999999986 99999988754
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-30 Score=288.45 Aligned_cols=192 Identities=23% Similarity=0.324 Sum_probs=154.9
Q ss_pred ceEEEEEeEEEEEeCCC-ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhh
Q 042733 25 PHYISLNEIVYSVDMPQ-IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETF 91 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~-~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~ 91 (531)
...++++||+|+|+.+. ..+|+|+|+.+++| ||||||++++|.+..++ .+|+|.++|.+... ..+
T Consensus 348 ~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP--~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP--TSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred ccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCceEEEcCccchhcchHHH
Confidence 45799999999998653 47999999999988 99999999999998764 57999999988653 457
Q ss_pred cceEEEEecCCCCCCCCcHHhHH-----HHHHHHHHHHHHhcCCchhh-------hcc---------HHHHHHHHHHHHH
Q 042733 92 ARILGYCEQNDIHSPHDTLYDFT-----HCLYMFIEEGMELVELNPFR-------QAL---------FEQRKRLTVAVEF 150 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~~ltv~e~~-----~~~~~~~~~~l~~l~l~~~~-------~~~---------~GerqRv~iA~aL 150 (531)
|.++|.|.|+|.++ ..|++|+. ...++.+.++.+..+..+.. ++. .|||||++|||||
T Consensus 426 r~~iglV~QePvlF-~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARal 504 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLF-ATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARAL 504 (1228)
T ss_pred HhhcCeeeechhhh-cccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHH
Confidence 88999999999664 68999981 11123333443333322222 222 2899999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+.+|+||+||||||+||+.+.+.+.+.|++.. .|+|.|+++|+++ .+ +.+|+++++++ |+++..|+.++
T Consensus 505 v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tI-rnaD~I~v~~~-G~IvE~G~h~E 573 (1228)
T KOG0055|consen 505 VRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TI-RNADKIAVMEE-GKIVEQGTHDE 573 (1228)
T ss_pred HhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hh-hccCEEEEEEC-CEEEEecCHHH
Confidence 99999999999999999999999999998764 5899999999987 34 45999999996 99999998754
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=280.69 Aligned_cols=189 Identities=20% Similarity=0.286 Sum_probs=153.8
Q ss_pred eEEEEEeEEEEEeCCC-ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhc
Q 042733 26 HYISLNEIVYSVDMPQ-IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~-~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~ 92 (531)
..++++|++++|+..+ +.+|+|+|+.++|| |||||||+|+|+|..++ .+|+|.+||.+.+ ...++
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p--~~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP--QSGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEHHhcCHHHHH
Confidence 3689999999997433 57999999999998 99999999999998653 3689999998754 34567
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~ 151 (531)
+.++|++|++.++ +.|++||-. ...+.+.+.++..++.+..+ .+.|||||++||||++
T Consensus 414 ~~i~~~~Q~~~lf-~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~ 492 (576)
T TIGR02204 414 ARMALVPQDPVLF-AASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL 492 (576)
T ss_pred HhceEEccCCccc-cccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 8899999998765 579998821 12334555666655543222 1238999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ....+|+++.+++ |+++..|+.
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~-g~~~~~g~~ 558 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQ-GRIVAQGTH 558 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC-CEEEeeecH
Confidence 9999999999999999999999999999885 4899999999985 4577999999986 999999885
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=273.84 Aligned_cols=188 Identities=16% Similarity=0.250 Sum_probs=153.2
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~ 92 (531)
..++++|+++ +.+++|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...+
T Consensus 256 ~~l~~~~~~~------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~ 327 (501)
T PRK11288 256 VRLRLDGLKG------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR--TAGQVYLDGKPIDIRSPRDAIR 327 (501)
T ss_pred cEEEEecccc------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC--CCceEEECCEECCCCCHHHHHh
Confidence 3578888873 24778888666655 99999999999998653 46899999875421 2235
Q ss_pred ceEEEEecCC---CCCCCCcHHhHHH-----------------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHH
Q 042733 93 RILGYCEQND---IHSPHDTLYDFTH-----------------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLTV 146 (531)
Q Consensus 93 ~~igyv~Q~~---~~~~~ltv~e~~~-----------------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~i 146 (531)
+.++|++|++ .+++.+|+.|+.. ..+..+++.++.+++. +..++.+ ||||||+|
T Consensus 328 ~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~l 407 (501)
T PRK11288 328 AGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAIL 407 (501)
T ss_pred CCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHH
Confidence 6799999985 4788899988721 1123567788999984 5555554 99999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
|++|+.+|++|||||||+|||+.++++++++|++++++|.|||++|||++ ++.+.||++++|++ |++++.|++++
T Consensus 408 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 482 (501)
T PRK11288 408 GRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQ 482 (501)
T ss_pred HHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 99999999999999999999999999999999999888999999999987 57789999999986 99999998764
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-29 Score=238.82 Aligned_cols=160 Identities=20% Similarity=0.262 Sum_probs=129.4
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-----hhhcceEEEEecCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-----ETFARILGYCEQNDI 103 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-----~~~~~~igyv~Q~~~ 103 (531)
.++|+++++.. ..+.+.+||||||||||+|+|+|..++ .+|+|.++|.+... ..+++.++|++|++.
T Consensus 7 il~~vsl~i~~------Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 78 (190)
T TIGR01166 7 VLKGLNFAAER------GEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPD 78 (190)
T ss_pred eecceeEEEcC------CCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChh
Confidence 46777777753 246788888899999999999998653 47899999976421 234567999999973
Q ss_pred -CCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 042733 104 -HSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGL 166 (531)
Q Consensus 104 -~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgL 166 (531)
.....|++|+.. ...+.+++.++.+++.+..++.+ |||||++|||||+.+|++++|||||+||
T Consensus 79 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 158 (190)
T TIGR01166 79 DQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158 (190)
T ss_pred hccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 333579988721 11235677888999987766655 9999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 167 DARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 167 D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
|+.+++.+.+.|++++++|+|||++||+++
T Consensus 159 D~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 159 DPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999999999999878999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-29 Score=277.81 Aligned_cols=188 Identities=20% Similarity=0.231 Sum_probs=149.0
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++++|+. ++++|+|+|+.+++| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++
T Consensus 333 ~~i~~~~v~~~y~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~~~~ 409 (585)
T TIGR01192 333 GAVEFRHITFEFAN-SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP--TVGQILIDGIDINTVTRESLRK 409 (585)
T ss_pred CeEEEEEEEEECCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC--CCCEEEECCEEhhhCCHHHHHh
Confidence 36999999999963 346899999999888 99999999999998653 4689999998653 245678
Q ss_pred eEEEEecCCCCCCCCcHHhHHHH-----HHHHHHHHHHhcCCch-----------hh-----hccHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTHC-----LYMFIEEGMELVELNP-----------FR-----QALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~~-----~~~~~~~~l~~l~l~~-----------~~-----~~~~GerqRv~iA~aL~~ 152 (531)
.++|++|++.+++ .|++|+... ..+.+.+.++..++.+ .. +.+.|||||++|||||+.
T Consensus 410 ~i~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 410 SIATVFQDAGLFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred heEEEccCCccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 8999999988765 699987210 1122223333332221 11 123399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++++|||||+|||+.+++.+.+.|+++. +++|+|++||+++. ...||++++|++ |+++..|+.
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~--~~~~d~i~~l~~-G~i~~~g~~ 553 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST--VRNADLVLFLDQ-GRLIEKGSF 553 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH--HHcCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999874 58999999999863 467999999986 999998875
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-29 Score=250.17 Aligned_cols=194 Identities=22% Similarity=0.314 Sum_probs=166.8
Q ss_pred cceEEEEEeEEEEEeCCCc---------cccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 042733 24 EPHYISLNEIVYSVDMPQI---------GDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYP 85 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~~~---------~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~ 85 (531)
.++.++.+|+...|+.++. .+++++|+.+.+| |||||||-.+|.++.++ +|+|.+.|.+
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~ 349 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQD 349 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCcc
Confidence 5678999999999875432 6889999999888 99999999999998764 4899999987
Q ss_pred cch------hhhcceEEEEecCCC--CCCCCcHHhH-------------HHHHHHHHHHHHHhcCCchh-hhccH-----
Q 042733 86 EKQ------ETFARILGYCEQNDI--HSPHDTLYDF-------------THCLYMFIEEGMELVELNPF-RQALF----- 138 (531)
Q Consensus 86 ~~~------~~~~~~igyv~Q~~~--~~~~ltv~e~-------------~~~~~~~~~~~l~~l~l~~~-~~~~~----- 138 (531)
... ...|+.+-.|+||+. +.|.+||.+. ..++.+++.++++.+||++- +++..
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 642 246788999999974 7899999876 45667889999999999864 44443
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
|||||++||||++.+|++++||||||.||-.-+.+++++|+++.++ |.+-++++||+. -+..+||+|++|.+ |+++.
T Consensus 430 GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE 507 (534)
T COG4172 430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVE 507 (534)
T ss_pred chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-CEEee
Confidence 9999999999999999999999999999999999999999999864 999999999986 36678999999996 99999
Q ss_pred cCCCC
Q 042733 218 VGPLG 222 (531)
Q Consensus 218 ~G~~~ 222 (531)
.|+.+
T Consensus 508 ~G~~~ 512 (534)
T COG4172 508 QGPTE 512 (534)
T ss_pred eCCHH
Confidence 99863
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=276.58 Aligned_cols=177 Identities=24% Similarity=0.349 Sum_probs=146.2
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~ 94 (531)
.++++|++|+|+..++++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++.
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP--TEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEehhhCCHHHHHhh
Confidence 69999999999754457999999999998 99999999999998664 4699999998754 3457888
Q ss_pred EEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhh-------cc---------HHHHHHHHHHHHHhhC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQ-------AL---------FEQRKRLTVAVEFVAN 153 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~-------~~---------~GerqRv~iA~aL~~~ 153 (531)
++||+|++.+++ .|++|+-. ..++.+.++++..++.+..+ +. .|||||++|||||+++
T Consensus 398 i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 398 IAWVPQHPFLFA-GTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred eEEEcCCCcccC-cCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 999999998775 69999821 12344566666666654322 22 2899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
|++++||||||+||+.+++++.+.++++. +++|+|+++|+++ ....||++++|
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 99999999999999999999999999875 5899999999985 35679999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=275.93 Aligned_cols=192 Identities=21% Similarity=0.279 Sum_probs=161.2
Q ss_pred EEEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh--
Q 042733 27 YISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-- 90 (531)
Q Consensus 27 ~l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-- 90 (531)
.++++|++++|+.. .+.+|+|+|+.+.|| |||||||+|+|+|..++ .+|++.++|.+... ..
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP--TSGTYRVAGQDVATLDADALA 81 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcCcCCHHHHH
Confidence 57899999998532 246899999888887 99999999999998653 46999999986532 11
Q ss_pred --hcceEEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh
Q 042733 91 --FARILGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA 152 (531)
Q Consensus 91 --~~~~igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~ 152 (531)
.++.++|++|+..+++.+|+.|+. .+..+.+.+.++.+++.+..++.. |||||++|||+|+.
T Consensus 82 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~ 161 (648)
T PRK10535 82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161 (648)
T ss_pred HHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 246799999999999999988862 122345677889999988766665 99999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+|++|+|||||+|||+.+++.+.+.+++++++|+|+|++||+++ ..+.||++++|++ |+++..|+.++
T Consensus 162 ~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~-G~i~~~g~~~~ 229 (648)
T PRK10535 162 GGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRD-GEIVRNPPAQE 229 (648)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEEC-CEEEeecCccc
Confidence 99999999999999999999999999999877999999999986 3457999999996 99999998763
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-29 Score=231.18 Aligned_cols=156 Identities=24% Similarity=0.264 Sum_probs=126.8
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
++++|++++|+. .+.+|+++|+.+.+| |||||||+++|+|..++ .+|++.++|. +.++|+
T Consensus 1 i~~~~~~~~~~~-~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~--------~~i~~~ 69 (166)
T cd03223 1 IELENLSLATPD-GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW--GSGRIGMPEG--------EDLLFL 69 (166)
T ss_pred CEEEEEEEEcCC-CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCC--------ceEEEE
Confidence 367888888852 246888888888877 99999999999998653 4688888763 568999
Q ss_pred ecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 042733 99 EQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMV 178 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L 178 (531)
+|++.++ ..|+.|+.... .....+.|||||++|||+|+.+|++++|||||+|||+.+++.+.+.+
T Consensus 70 ~q~~~~~-~~tv~~nl~~~--------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l 134 (166)
T cd03223 70 PQRPYLP-LGTLREQLIYP--------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL 134 (166)
T ss_pred CCCCccc-cccHHHHhhcc--------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHH
Confidence 9997654 57888753210 12344559999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 179 RNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 179 ~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
+++ +.|+|++||+++ ....||++++|+++|.
T Consensus 135 ~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~~ 165 (166)
T cd03223 135 KEL---GITVISVGHRPS--LWKFHDRVLDLDGEGG 165 (166)
T ss_pred HHh---CCEEEEEeCChh--HHhhCCEEEEEcCCCC
Confidence 876 689999999975 3468999999987663
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-29 Score=236.61 Aligned_cols=171 Identities=18% Similarity=0.195 Sum_probs=135.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
++++|++++|+ ++.+++ +|+.+.+| |||||||+|+|+|..++ .+|++.++|.+..... ++.++|+
T Consensus 2 l~~~~l~~~~~--~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~-~~~~~~~ 75 (195)
T PRK13541 2 LSLHQLQFNIE--QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP--SSGNIYYKNCNINNIA-KPYCTYI 75 (195)
T ss_pred eEEEEeeEEEC--CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCcccChhh-hhhEEec
Confidence 56778888874 233444 77777666 99999999999998653 4799999998754322 3458999
Q ss_pred ecCCCCCCCCcHHhHHHH------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 042733 99 EQNDIHSPHDTLYDFTHC------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLD 167 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~~------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD 167 (531)
+|+..+++..|+.|+... ....+++.++.+++.+..++.+ |||||++||++++.+|++++|||||+|||
T Consensus 76 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD 155 (195)
T PRK13541 76 GHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155 (195)
T ss_pred cCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999888888999987321 1235677788888876666554 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeE
Q 042733 168 ARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDEL 206 (531)
Q Consensus 168 ~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v 206 (531)
+.+++.+.+.|++..++|+|+|+++|+++. ...+|.+
T Consensus 156 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~ 192 (195)
T PRK13541 156 KENRDLLNNLIVMKANSGGIVLLSSHLESS--IKSAQIL 192 (195)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCccc--cchhhee
Confidence 999999999998776779999999999863 3345544
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-29 Score=271.34 Aligned_cols=186 Identities=18% Similarity=0.249 Sum_probs=149.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~ 93 (531)
.++++|+++ .+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhC
Confidence 577787762 1466666666555 99999999999997653 36899999875432 12345
Q ss_pred eEEEEecCC---CCCCCCcHHhHHH--------------HHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHHH
Q 042733 94 ILGYCEQND---IHSPHDTLYDFTH--------------CLYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVEF 150 (531)
Q Consensus 94 ~igyv~Q~~---~~~~~ltv~e~~~--------------~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~aL 150 (531)
.++|++|++ .+++.+|+.++.. ..+..+++.++.+++. +..++.+ ||||||+||++|
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 799999984 4777888876521 1123467788999996 5566654 999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++ ++.+.||++++|++ |+++..|.+++
T Consensus 419 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~~ 489 (510)
T PRK15439 419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGAA 489 (510)
T ss_pred hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcccc
Confidence 9999999999999999999999999999999888999999999987 57789999999986 99999887754
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=302.93 Aligned_cols=189 Identities=18% Similarity=0.202 Sum_probs=156.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~ 94 (531)
.|+++||+++|+.+.+++|+|+|+.++|| |||||||+++|.|..++ .+|+|.++|.+.. ...+|+.
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEEhhhCCHHHHHhh
Confidence 69999999999644457999999999999 99999999999998653 4699999998764 3567889
Q ss_pred EEEEecCCCCCCCCcHHhHH----HHHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhhCC
Q 042733 95 LGYCEQNDIHSPHDTLYDFT----HCLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVANP 154 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~----~~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~~p 154 (531)
++||||++.+++ -|++||- ....+.+.++++..++.+..+ -+.|||||++|||||+++|
T Consensus 1312 i~iVpQdp~LF~-gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232 1312 LSIIPQSPVLFS-GTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred cEEECCCCeeeC-ccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 999999998886 5999982 112234556666666544322 2238999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+||+||||||+||+.+.+.+.+.|++.. +++|+|+++|+++ ....||+|++|++ |+++..|+++
T Consensus 1391 ~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~-G~ivE~Gt~~ 1454 (1495)
T PLN03232 1391 KILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS-GQVLEYDSPQ 1454 (1495)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999864 4899999999986 3456999999996 9999999874
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=302.25 Aligned_cols=190 Identities=18% Similarity=0.226 Sum_probs=157.6
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..|+++||+++|+.+.+++|+|+|++++|| |||||||+++|.|..++ .+|+|.++|.+... ..+|+
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEecccCCHHHHHh
Confidence 369999999999744457999999999999 99999999999998663 46999999987643 56788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~~ 153 (531)
.+++|||++.++. -|++||.. ...+.+.++++..++.+..+ -+.|||||++|||||+++
T Consensus 1314 ~IsiVpQdp~LF~-GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130 1314 VLGIIPQAPVLFS-GTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred ccEEECCCCcccc-ccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 9999999998886 49999821 12234556666665543322 223899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+||+||||||+||+.+.+.+.+.|++.. +++|+|+++|+++. ...||+|++|++ |+++..|+++
T Consensus 1393 p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~DrIlVLd~-G~IvE~Gt~~ 1457 (1622)
T PLN03130 1393 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILVLDA-GRVVEFDTPE 1457 (1622)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999875 48999999999873 456899999996 9999999975
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=240.33 Aligned_cols=178 Identities=20% Similarity=0.241 Sum_probs=134.5
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhhc
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETFA 92 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~~ 92 (531)
.+.++.++|+. .+.+++++|+.+.+| |||||||+++|+|..++ .+|+|.++|.+... ...+
T Consensus 2 ~~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (218)
T cd03290 2 QVTNGYFSWGS-GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSFEATRSRNR 78 (218)
T ss_pred eeeeeEEecCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCcccccccccccchhhc
Confidence 45677777753 245778887777766 99999999999998653 46899999875421 1234
Q ss_pred ceEEEEecCCCCCCCCcHHhHHHH----HHHHHHHHHHhcCCchhh----------------hccHHHHHHHHHHHHHhh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTHC----LYMFIEEGMELVELNPFR----------------QALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~~----~~~~~~~~l~~l~l~~~~----------------~~~~GerqRv~iA~aL~~ 152 (531)
+.++|++|++.++ ..|++|+... ......+.++.+++.+.. +.+.|||||++||++|+.
T Consensus 79 ~~i~~~~q~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 79 YSVAYAAQKPWLL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred ceEEEEcCCCccc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 6799999998776 5799887321 112234455555554321 223399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCc
Q 042733 153 NPSIISRDEPISGLDARAATTVIR--MVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVG 213 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~--~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G 213 (531)
+|++++|||||+|||+.++..+++ +++.++++|.|+|++||+++. + ..||++++|++ |
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~-G 217 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKD-G 217 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecC-C
Confidence 999999999999999999999998 666666668999999999873 4 56999999985 6
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=268.31 Aligned_cols=190 Identities=22% Similarity=0.301 Sum_probs=150.3
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhh
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETF 91 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~ 91 (531)
...++++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..+. ..+|+|.++|.+... ...
T Consensus 258 ~~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~ 334 (490)
T PRK10938 258 EPRIVLNNGVVSYN--DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDI 334 (490)
T ss_pred CceEEEeceEEEEC--CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHH
Confidence 34699999999995 356999999887766 99999999999997542 136899999875321 124
Q ss_pred cceEEEEecCCCCCC--CCcHHhHHH---------------HHHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHH
Q 042733 92 ARILGYCEQNDIHSP--HDTLYDFTH---------------CLYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAV 148 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~--~ltv~e~~~---------------~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~ 148 (531)
++.+||++|++.+.+ ..++++... .....+++.++.+++.+ ..++.+ ||||||+||+
T Consensus 335 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~ 414 (490)
T PRK10938 335 KKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVR 414 (490)
T ss_pred HhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHH
Confidence 567999999865433 245655411 11345778899999986 666654 9999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEecCCchHHHh-ccCeEEEEccCceeeecC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMG-RTVVCTIHQPSIDIFY-SFDELFLLKQVGQEISVG 219 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~-~~d~v~lL~~~G~~v~~G 219 (531)
+|+.+|++|+|||||+|||+.+++.+.+.|++++++| .|||++||+++ ++.+ .+|++++|++ |+++..-
T Consensus 415 al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~~ 485 (490)
T PRK10938 415 ALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRYV 485 (490)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEee
Confidence 9999999999999999999999999999999998775 46999999987 4555 5899999986 8887653
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=271.19 Aligned_cols=187 Identities=18% Similarity=0.232 Sum_probs=152.2
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++|++|+|+. ++++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+..+ ..+++
T Consensus 321 ~~i~~~~v~f~y~~-~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~~~~ 397 (547)
T PRK10522 321 QTLELRNVTFAYQD-NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKPVTAEQPEDYRK 397 (547)
T ss_pred ceEEEEEEEEEeCC-CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEECCCCCHHHHhh
Confidence 36999999999973 346999999999998 99999999999998653 47999999987542 45778
Q ss_pred eEEEEecCCCCCCCCcHHhHH-HHHHHHHHHHHHhcCCchhh----------hccHHHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFT-HCLYMFIEEGMELVELNPFR----------QALFEQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~-~~~~~~~~~~l~~l~l~~~~----------~~~~GerqRv~iA~aL~~~p~lllLDEP 162 (531)
.++|++|++.+++ .|++++. ....+.+++.++.+++.... +.+.|||||++||||++++|++|+||||
T Consensus 398 ~i~~v~q~~~lf~-~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ 476 (547)
T PRK10522 398 LFSAVFTDFHLFD-QLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEW 476 (547)
T ss_pred heEEEecChhHHH-HhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 8999999987654 5666651 22234566777777776432 2344999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 163 ISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|++||+.+++.+.+.+.+..+ +|+|+|+++|+++ ....||++++|++ |+++...
T Consensus 477 ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~-G~i~e~~ 531 (547)
T PRK10522 477 AADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRN-GQLSELT 531 (547)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEEC-CEEEEec
Confidence 999999999999999886654 5899999999975 4678999999986 8888664
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=242.35 Aligned_cols=154 Identities=21% Similarity=0.243 Sum_probs=130.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHH-------HH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHC-------LY 118 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~-------~~ 118 (531)
.++.+.+||||||||||+|+|+|..++ .+|++.++|. .++|++|+....+..||.|+... ..
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p--~~G~i~~~g~---------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 93 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKP--DEGDIEIELD---------TVSYKPQYIKADYEGTVRDLLSSITKDFYTHP 93 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCc---------eEEEecccccCCCCCCHHHHHHHHhhhccccH
Confidence 367899999999999999999997653 4688888773 58999999877778999987321 11
Q ss_pred HHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEe
Q 042733 119 MFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTI 192 (531)
Q Consensus 119 ~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~ 192 (531)
...+++++.+++.+..++.+ ||||||+||++|+.+|++++|||||++||+.++..+.+.|++++++ |+|||++|
T Consensus 94 ~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivs 173 (246)
T cd03237 94 YFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVE 173 (246)
T ss_pred HHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 23567888999987666654 9999999999999999999999999999999999999999999864 89999999
Q ss_pred cCCchHHHhccCeEEEEcc
Q 042733 193 HQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 193 H~~~~~i~~~~d~v~lL~~ 211 (531)
|++. .+...||++++|+.
T Consensus 174 Hd~~-~~~~~~d~i~~l~~ 191 (246)
T cd03237 174 HDII-MIDYLADRLIVFEG 191 (246)
T ss_pred CCHH-HHHHhCCEEEEEcC
Confidence 9986 46678999999963
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-29 Score=268.33 Aligned_cols=187 Identities=21% Similarity=0.343 Sum_probs=152.6
Q ss_pred eEEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 26 HYISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
-.|+|+||+|.|+.+ +.++|+|+|++++|| |+||||+.++|-...++ .+|+|.++|.|+.+ ..+|
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P--tsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP--TSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEEECCeehhhcCHHHHH
Confidence 478999999999865 347999999999999 99999999999997653 47999999998754 4578
Q ss_pred ceEEEEecCCCCCCCCcHHhHH---------HHH-----HHHHHHHHHhcCCchhhhccH---------HHHHHHHHHHH
Q 042733 93 RILGYCEQNDIHSPHDTLYDFT---------HCL-----YMFIEEGMELVELNPFRQALF---------EQRKRLTVAVE 149 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~---------~~~-----~~~~~~~l~~l~l~~~~~~~~---------GerqRv~iA~a 149 (531)
++||+|.|+|.+|. -|++||. ++. ...+++-+.. +.+-.|+.+ |||||++||||
T Consensus 542 ~~Ig~V~QEPvLFs-~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~--~p~gY~T~VGEkG~qLSGGQKQRIAIARA 618 (716)
T KOG0058|consen 542 RKIGLVGQEPVLFS-GSIRENIAYGLDNATDEEIEAAAKMANAHEFITN--FPDGYNTVVGEKGSQLSGGQKQRIAIARA 618 (716)
T ss_pred HHeeeeeccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHh--CccccccccCCccccccchHHHHHHHHHH
Confidence 99999999999874 6888881 111 1112222222 223334444 89999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|++||+||||||.||.||.++...+.+.|.++.+ ++|||++.|.++ ..+.+|+|+++++ |+++..|+-
T Consensus 619 Llr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~-G~V~E~G~h 686 (716)
T KOG0058|consen 619 LLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK-GRVVEMGTH 686 (716)
T ss_pred HhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC-CeEEecccH
Confidence 9999999999999999999999999999988865 599999999986 4678899999996 999999964
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=267.97 Aligned_cols=178 Identities=20% Similarity=0.208 Sum_probs=145.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
|+++|++++|+ ++++|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|. +.+||+
T Consensus 2 l~i~~ls~~~~--~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~--------~~i~~~ 69 (530)
T PRK15064 2 LSTANITMQFG--AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP--SAGNVSLDPN--------ERLGKL 69 (530)
T ss_pred EEEEEEEEEeC--CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC--------CEEEEE
Confidence 67889998885 356888888887776 99999999999997653 4688888762 358999
Q ss_pred ecCCCCCCCCcHHhHHHH-------------------------------------------HHHHHHHHHHhcCCchhh-
Q 042733 99 EQNDIHSPHDTLYDFTHC-------------------------------------------LYMFIEEGMELVELNPFR- 134 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~~-------------------------------------------~~~~~~~~l~~l~l~~~~- 134 (531)
+|++.+++.+||.|+... ...+++++++.+|+.+..
T Consensus 70 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 149 (530)
T PRK15064 70 RQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH 149 (530)
T ss_pred eccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh
Confidence 999888888898876210 123466788889986532
Q ss_pred hcc-----HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 135 QAL-----FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 135 ~~~-----~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
+.. .||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++ .|.|||++||+++ .+.+.||++++|
T Consensus 150 ~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~~~~d~i~~l 225 (530)
T PRK15064 150 YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLNSVCTHMADL 225 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHHhhcceEEEE
Confidence 222 3999999999999999999999999999999999999999863 5899999999987 477889999999
Q ss_pred ccCcee-eecCCCC
Q 042733 210 KQVGQE-ISVGPLG 222 (531)
Q Consensus 210 ~~~G~~-v~~G~~~ 222 (531)
++ |++ ++.|+++
T Consensus 226 ~~-g~i~~~~g~~~ 238 (530)
T PRK15064 226 DY-GELRVYPGNYD 238 (530)
T ss_pred eC-CEEEEecCCHH
Confidence 96 898 4788753
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=271.09 Aligned_cols=187 Identities=17% Similarity=0.174 Sum_probs=150.9
Q ss_pred eEEEEEeEEEEEeCC---CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh
Q 042733 26 HYISLNEIVYSVDMP---QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET 90 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~---~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~ 90 (531)
..++++|++|+|+.+ ++++|+|+|+.+++| |||||||+|+|+|..++ .+|+|.++|.+..+ ..
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p--~~G~i~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP--QEGEILLDGAAVSADSRDD 413 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHH
Confidence 469999999999743 235999999999988 99999999999997653 46999999987643 45
Q ss_pred hcceEEEEecCCCCCCCCcHHhHH--HHHHHHHHHHHHhcCCchhhh-----------ccHHHHHHHHHHHHHhhCCCeE
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFT--HCLYMFIEEGMELVELNPFRQ-----------ALFEQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~--~~~~~~~~~~l~~l~l~~~~~-----------~~~GerqRv~iA~aL~~~p~ll 157 (531)
+++.++|++|++.++. .|++++. ....+.+++.++.+++.+..+ .+.|||||++||||++.+|+++
T Consensus 414 ~~~~i~~v~q~~~lf~-~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~il 492 (555)
T TIGR01194 414 YRDLFSAIFADFHLFD-DLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPIL 492 (555)
T ss_pred HHhhCcEEccChhhhh-hhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 6788999999987664 4666552 223345677788888765432 3349999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH-HHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeec
Q 042733 158 SRDEPISGLDARAATTVIRMVR-NTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISV 218 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~-~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~ 218 (531)
+|||||++||+.+++.+.+.+. .++.+|+|+|+++|+++ ..+.+|++++|++ |+++..
T Consensus 493 ilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~-G~i~~~ 551 (555)
T TIGR01194 493 LFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAA-GCIVKD 551 (555)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999998664 45557899999999985 4678999999986 888743
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-29 Score=256.73 Aligned_cols=207 Identities=24% Similarity=0.292 Sum_probs=168.8
Q ss_pred hhhhhcccCCCccccccceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEE
Q 042733 8 AIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRN 78 (531)
Q Consensus 8 ~i~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~ 78 (531)
.++....+...|.+|...-.+.++++++.-+..++++|+++||.+.+| |||||||.|+|.|..++ .+|.
T Consensus 315 lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p--~~G~ 392 (580)
T COG4618 315 LLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP--TSGS 392 (580)
T ss_pred HHHhCccccCCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc--CCCc
Confidence 455666666788888777889999999977766779999999988877 99999999999997663 4789
Q ss_pred EEEcCcccch---hhhcceEEEEecCCCCCCCCcHHhHHHH-----HH---------HHHHHHHHhcCCchhhhccH---
Q 042733 79 ITVSGYPEKQ---ETFARILGYCEQNDIHSPHDTLYDFTHC-----LY---------MFIEEGMELVELNPFRQALF--- 138 (531)
Q Consensus 79 i~~~g~~~~~---~~~~~~igyv~Q~~~~~~~ltv~e~~~~-----~~---------~~~~~~l~~l~l~~~~~~~~--- 138 (531)
|.++|.+.++ +.+-+.+||+||+-.+|+ -|+.||... .. ..+.+.+-. +.+=.|+.+
T Consensus 393 VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~--lP~GYdT~iG~~ 469 (580)
T COG4618 393 VRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIARFGEEADPEKVIEAARLAGVHELILR--LPQGYDTRIGEG 469 (580)
T ss_pred EEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHhccccCCHHHHHHHHHHcChHHHHHh--CcCCccCccCCC
Confidence 9999987643 457789999999988775 689888211 11 112222222 222234443
Q ss_pred ------HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccC
Q 042733 139 ------EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQV 212 (531)
Q Consensus 139 ------GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~ 212 (531)
|||||+++||||..+|.+++||||-|+||......+.+.|.+++++|.|+|+++|.|+ +...+|+|++|++
T Consensus 470 G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~- 546 (580)
T COG4618 470 GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQD- 546 (580)
T ss_pred CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecC-
Confidence 8999999999999999999999999999999999999999999999999999999986 5788999999996
Q ss_pred ceeeecCCCC
Q 042733 213 GQEISVGPLG 222 (531)
Q Consensus 213 G~~v~~G~~~ 222 (531)
|++-.+|+.+
T Consensus 547 G~~~~FG~r~ 556 (580)
T COG4618 547 GRIAAFGPRE 556 (580)
T ss_pred ChHHhcCCHH
Confidence 9999999963
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-29 Score=272.18 Aligned_cols=165 Identities=24% Similarity=0.326 Sum_probs=136.7
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc--hhhhcce
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK--QETFARI 94 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~--~~~~~~~ 94 (531)
..++++||+|+|+. ++++|+|+|++++|| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++.
T Consensus 333 ~~I~~~~vsf~Y~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~i~g~~i~~~~~~lr~~ 409 (529)
T TIGR02868 333 PTLELRDLSFGYPG-SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP--LQGEVTLDGVSVSSLQDELRRR 409 (529)
T ss_pred ceEEEEEEEEecCC-CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhhhHHHHHHhh
Confidence 46999999999974 346999999999998 99999999999998664 4799999997654 3557789
Q ss_pred EEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhh-------cc---------HHHHHHHHHHHHHhhC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQ-------AL---------FEQRKRLTVAVEFVAN 153 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~-------~~---------~GerqRv~iA~aL~~~ 153 (531)
++||+|++.+++ .|++||-. ...+.+.++++..++.+..+ +. .|||||++|||||+++
T Consensus 410 i~~V~Q~~~lF~-~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~ 488 (529)
T TIGR02868 410 ISVFAQDAHLFD-TTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLAD 488 (529)
T ss_pred eEEEccCccccc-ccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcC
Confidence 999999988764 69999821 23345667777777655332 22 2899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
|++++||||||+||+.+++.+.+.|+++. +++|+|+++|++
T Consensus 489 ~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 489 APILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999999999999999999998763 579999999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=266.15 Aligned_cols=190 Identities=12% Similarity=0.174 Sum_probs=151.8
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhh
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETF 91 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~ 91 (531)
+..|+++|+++.+ +.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...
T Consensus 248 ~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~ 321 (491)
T PRK10982 248 EVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKINNHNANEAI 321 (491)
T ss_pred CcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHH
Confidence 3468999999863 35889888777766 99999999999998653 46899999976432 123
Q ss_pred cceEEEEecCC---CCCCCCcHHhH-----H------------HHHHHHHHHHHHhcCCc-hhhhccH-----HHHHHHH
Q 042733 92 ARILGYCEQND---IHSPHDTLYDF-----T------------HCLYMFIEEGMELVELN-PFRQALF-----EQRKRLT 145 (531)
Q Consensus 92 ~~~igyv~Q~~---~~~~~ltv~e~-----~------------~~~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~ 145 (531)
++.++|++|+. .+++.+|+.++ . ......+++.++.+++. +..++.+ ||||||+
T Consensus 322 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 401 (491)
T PRK10982 322 NHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVI 401 (491)
T ss_pred HCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHH
Confidence 55689999985 35677776543 0 11123456778888884 3445544 9999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||++++.+|++|+|||||+|||+.++..+++.+++++++|.|||++|||++ ++.++||++++|.+ |+++..++.+
T Consensus 402 la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 402 IGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred HHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 999999999999999999999999999999999999888999999999987 57789999999986 9999877654
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-29 Score=295.94 Aligned_cols=192 Identities=15% Similarity=0.241 Sum_probs=155.3
Q ss_pred EEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-----------------------
Q 042733 27 YISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG----------------------- 73 (531)
Q Consensus 27 ~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g----------------------- 73 (531)
.|+++||+|+|+.. +.++|+|+|+.++|| |||||||+++|.|..++.
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 58999999999743 357999999999999 999999999999965430
Q ss_pred -----------------------------eEEEEEEEcCcccch---hhhcceEEEEecCCCCCCCCcHHhHHH-----H
Q 042733 74 -----------------------------YITRNITVSGYPEKQ---ETFARILGYCEQNDIHSPHDTLYDFTH-----C 116 (531)
Q Consensus 74 -----------------------------~~~G~i~~~g~~~~~---~~~~~~igyv~Q~~~~~~~ltv~e~~~-----~ 116 (531)
..+|+|.++|.+..+ ..+|+.+|||+|++.+| ..|++||.. .
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~~a 1323 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKEDA 1323 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCCCC
Confidence 137999999988643 56788999999998876 689999821 1
Q ss_pred HHHHHHHHHHhcCCchhh-------hccH---------HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 042733 117 LYMFIEEGMELVELNPFR-------QALF---------EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRN 180 (531)
Q Consensus 117 ~~~~~~~~l~~l~l~~~~-------~~~~---------GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~ 180 (531)
..+.++++++..++.+.. |+.+ |||||++|||||+++|+||+||||||+||+.+.+.+.+.|++
T Consensus 1324 t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265 1324 TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVD 1403 (1466)
T ss_pred CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 223456666666554432 2222 899999999999999999999999999999999999999999
Q ss_pred HH-HcCCeEEEEecCCchHHHhccCeEEEEccC---ceee-ecCCC
Q 042733 181 TV-DMGRTVVCTIHQPSIDIFYSFDELFLLKQV---GQEI-SVGPL 221 (531)
Q Consensus 181 l~-~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~---G~~v-~~G~~ 221 (531)
+. .+++|+|+++|+++ ....||+|++|+++ |+++ ..|+.
T Consensus 1404 ~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1404 IKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred HhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 86 36899999999985 45679999999852 7754 78875
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=297.31 Aligned_cols=190 Identities=17% Similarity=0.171 Sum_probs=158.6
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
-.|+++||+++|+.+...+|+|+|+.++|| |||||||+++|.|..++ .+|+|.++|.++. ...+|+
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcccCCHHHHHh
Confidence 369999999999754456999999999999 99999999999998663 4699999998864 356789
Q ss_pred eEEEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchhh-------h---------ccHHHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPFR-------Q---------ALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~~-------~---------~~~GerqRv~iA~aL~~~ 153 (531)
.+|||||++.++. -|+++|.. ...+.+.++++..++.+.. | .+.|||||++|||||+++
T Consensus 1385 ~I~iVpQdp~LF~-gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1385 QFSMIPQDPVLFD-GTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred cceEECCCCcccc-ccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 9999999998876 59999832 1234566777777765432 2 223999999999999996
Q ss_pred -CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 -PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 -p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+||+||||||+||+.+.+.+.+.|++.. +++|||+++|+++ ....||+|++|++ |+++..|+++
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~-G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDH-GAVAEMGSPR 1529 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 89999999999999999999999998864 4799999999985 4567999999986 9999999864
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=296.54 Aligned_cols=190 Identities=16% Similarity=0.171 Sum_probs=157.7
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..|+++||+++|+.+...+|+|+|+.++|| |||||||+++|.|..++ .+|+|.++|.++.. ..+|+
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCEEccccCHHHHHh
Confidence 469999999999754457999999999998 99999999999998653 46999999988643 56788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~~ 153 (531)
.+++|||++.++.. |+++|.. ...+.+.++++..++.+..+ -+.|||||++|||||+++
T Consensus 1361 ~i~iVpQdp~LF~g-TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1361 KITIIPQDPVLFSG-SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred cCeEECCCCcccCc-cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 99999999998864 9999832 12334566666666544322 122899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++ ....+|+|++|++ |+++..|+++
T Consensus 1440 ~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~-G~IvE~G~~~ 1504 (1522)
T TIGR00957 1440 TKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK-GEVAEFGAPS 1504 (1522)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999999999998864 4899999999986 3556899999996 9999999874
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-28 Score=242.09 Aligned_cols=181 Identities=15% Similarity=0.181 Sum_probs=140.3
Q ss_pred cccccceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhh
Q 042733 20 VLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQET 90 (531)
Q Consensus 20 ~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~ 90 (531)
..+..+..|+++|+++. .+.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|
T Consensus 32 ~~~~~~~~l~i~nls~~----~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p--~~G~I~i~g------- 98 (282)
T cd03291 32 KHSSDDNNLFFSNLCLV----GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP--SEGKIKHSG------- 98 (282)
T ss_pred ccCCCCCeEEEEEEEEe----cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC-------
Confidence 34445667999999985 246999999888887 99999999999998653 368888877
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHHH----HHHHHHHHHHhcCCchh----------------hhccHHHHHHHHHHHHH
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTHC----LYMFIEEGMELVELNPF----------------RQALFEQRKRLTVAVEF 150 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~~----~~~~~~~~l~~l~l~~~----------------~~~~~GerqRv~iA~aL 150 (531)
.++|++|++.+++ .|++|+... ......+.++.+++.+. ...+.|||||++||++|
T Consensus 99 ---~i~yv~q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL 174 (282)
T cd03291 99 ---RISFSSQFSWIMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAV 174 (282)
T ss_pred ---EEEEEeCcccccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHH
Confidence 3899999987776 499887221 01122333444444321 12334999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMV-RNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+.+|++++|||||+|||+.++..+.+.+ +.++ ++.|||++||++.. + ..||++++|++ |+++..|++
T Consensus 175 ~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~-G~i~~~g~~ 242 (282)
T cd03291 175 YKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHE-GSSYFYGTF 242 (282)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999999865 5554 57999999999873 4 57999999986 999999875
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-28 Score=266.21 Aligned_cols=179 Identities=23% Similarity=0.277 Sum_probs=141.4
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..|+++||+++|+. ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.+++. ..+|
T Consensus 5 ~~l~i~~l~~~y~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p--~~G~i~~~~~--------~~i~ 73 (556)
T PRK11819 5 YIYTMNRVSKVVPP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPG--------IKVG 73 (556)
T ss_pred EEEEEeeEEEEeCC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC--------CEEE
Confidence 35777888877741 356777777776666 99999999999998653 4688887641 3589
Q ss_pred EEecCCCCCCCCcHHhHHHHH-----------------------------------------------HHHHHHHHHhcC
Q 042733 97 YCEQNDIHSPHDTLYDFTHCL-----------------------------------------------YMFIEEGMELVE 129 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~~~-----------------------------------------------~~~~~~~l~~l~ 129 (531)
|++|++.+++.+|+.|+.... ..+++++++.+|
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 153 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALR 153 (556)
T ss_pred EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCC
Confidence 999999888899998872110 123445667777
Q ss_pred Cchhhhcc-----HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccC
Q 042733 130 LNPFRQAL-----FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFD 204 (531)
Q Consensus 130 l~~~~~~~-----~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d 204 (531)
+.. .++. .||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++||+++ .+...||
T Consensus 154 l~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd~~-~~~~~~d 228 (556)
T PRK11819 154 CPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHDRY-FLDNVAG 228 (556)
T ss_pred CCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcC
Confidence 743 3333 39999999999999999999999999999999999999999886 359999999987 4677899
Q ss_pred eEEEEccCceee-ecCCC
Q 042733 205 ELFLLKQVGQEI-SVGPL 221 (531)
Q Consensus 205 ~v~lL~~~G~~v-~~G~~ 221 (531)
++++|++ |+++ +.|+.
T Consensus 229 ~i~~l~~-g~i~~~~g~~ 245 (556)
T PRK11819 229 WILELDR-GRGIPWEGNY 245 (556)
T ss_pred eEEEEeC-CEEEEecCCH
Confidence 9999996 8876 77765
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=292.99 Aligned_cols=189 Identities=16% Similarity=0.185 Sum_probs=159.3
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..|+++||+++|+.+.+.+|+|+|+.++|| |||||||+++|.|..+ .+|+|.++|.+... ..+|+
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEcccCCHHHHHh
Confidence 369999999999765578999999999999 9999999999999865 36999999988643 45788
Q ss_pred eEEEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhhC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~~ 153 (531)
.++|+||++.+++ -|+++|.. ...+.+.++++..++.+... -+.|||||++|||||+++
T Consensus 1293 ~is~IpQdp~LF~-GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~ 1371 (1490)
T TIGR01271 1293 AFGVIPQKVFIFS-GTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSK 1371 (1490)
T ss_pred ceEEEeCCCccCc-cCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCC
Confidence 9999999999887 59999832 12345667777777754322 223899999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+||+|||||++||+.+...+.+.|++.. +++|||+++|+++ ....||+|++|++ |+++..|++.
T Consensus 1372 ~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~-G~ivE~g~p~ 1436 (1490)
T TIGR01271 1372 AKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG-SSVKQYDSIQ 1436 (1490)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999864 4799999999986 3556999999986 9999999874
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=262.40 Aligned_cols=179 Identities=15% Similarity=0.206 Sum_probs=147.8
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..++++|++++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|. +.+|
T Consensus 318 ~~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~--------~~i~ 385 (530)
T PRK15064 318 NALEVENLTKGFD--NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN--------ANIG 385 (530)
T ss_pred ceEEEEeeEEeeC--CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--------eEEE
Confidence 3699999999995 356999999887766 99999999999997653 4688988762 4689
Q ss_pred EEecCCC--CCCCCcHHhHHHH------HHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 97 YCEQNDI--HSPHDTLYDFTHC------LYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 97 yv~Q~~~--~~~~ltv~e~~~~------~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
|++|+.. +.+.+|+.++... ....+++.++.+++. +..++.+ ||||||+||++|+.+|++|+||||
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP 465 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999864 5567899886321 134567889999984 4555554 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee-ecCCC
Q 042733 163 ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI-SVGPL 221 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v-~~G~~ 221 (531)
|+|||+.++..+.+.|+++ +.|||++|||++ .+...||++++|++ |+++ +.|++
T Consensus 466 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~ 520 (530)
T PRK15064 466 TNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFSGTY 520 (530)
T ss_pred CCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcCCCH
Confidence 9999999999999999876 459999999987 57778999999986 8887 77764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=261.66 Aligned_cols=179 Identities=23% Similarity=0.307 Sum_probs=141.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.++++|++++|+ +++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.+++ +..+||
T Consensus 4 ~i~~~nls~~~~-~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p--~~G~i~~~~--------~~~i~~ 72 (552)
T TIGR03719 4 IYTMNRVSKVVP-PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAP--------GIKVGY 72 (552)
T ss_pred EEEEeeEEEecC-CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecC--------CCEEEE
Confidence 578999999985 1356899988887777 99999999999998653 468888764 246999
Q ss_pred EecCCCCCCCCcHHhHHHH--H--------------------H-------------------------HHHHHHHHhcCC
Q 042733 98 CEQNDIHSPHDTLYDFTHC--L--------------------Y-------------------------MFIEEGMELVEL 130 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~--~--------------------~-------------------------~~~~~~l~~l~l 130 (531)
++|++.+++.+||.|+... . . .++++.++.+++
T Consensus 73 v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 152 (552)
T TIGR03719 73 LPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC 152 (552)
T ss_pred EeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCC
Confidence 9999988889999887211 0 0 123345566666
Q ss_pred chhhhcc-----HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCe
Q 042733 131 NPFRQAL-----FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 131 ~~~~~~~-----~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~ 205 (531)
.. .++. .||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++||+++ .+...||+
T Consensus 153 ~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~-~~~~~~d~ 227 (552)
T TIGR03719 153 PP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRY-FLDNVAGW 227 (552)
T ss_pred Cc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcCe
Confidence 42 2333 39999999999999999999999999999999999999999875 359999999987 46778999
Q ss_pred EEEEccCceee-ecCCCC
Q 042733 206 LFLLKQVGQEI-SVGPLG 222 (531)
Q Consensus 206 v~lL~~~G~~v-~~G~~~ 222 (531)
+++|++ |+++ +.|+.+
T Consensus 228 v~~l~~-g~i~~~~g~~~ 244 (552)
T TIGR03719 228 ILELDR-GRGIPWEGNYS 244 (552)
T ss_pred EEEEEC-CEEEEecCCHH
Confidence 999996 8875 777753
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=259.95 Aligned_cols=193 Identities=18% Similarity=0.219 Sum_probs=152.9
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEE---------EcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGA---------FRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~---------i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
...++++|+++.|+. ..|+++|+. +||||||||||+|+|+|..++ .+|+|.++ ..+
T Consensus 338 ~~~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~----------~~i 402 (590)
T PRK13409 338 ETLVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE----------LKI 402 (590)
T ss_pred ceEEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----------eeE
Confidence 356999999999852 247775554 455599999999999997653 46788764 148
Q ss_pred EEEecCCCCCCCCcHHhHHHH------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTHC------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPIS 164 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPts 164 (531)
+|++|+..+.+.+||+|+... ....++++++.+++.+..++.+ ||||||+||++|+.+|++|+|||||+
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~ 482 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSA 482 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999999888889999987321 1234678899999987777665 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCC---chhHHHHHHhh
Q 042733 165 GLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPS---SIHLISYFEKI 235 (531)
Q Consensus 165 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~---~~~~~~~f~~~ 235 (531)
|||+.++..+.+.|++++++ |.|||++|||+. .+...+|++++|+ |++...|..... .+.+..+++.+
T Consensus 483 ~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 483 HLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHASGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--CcceeeeecCCchhHHHHHHHHHHHc
Confidence 99999999999999999874 899999999987 4677899999995 578777765332 12334455554
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=237.58 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=129.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEE-----------EcCcccchh--h-hc--ceEEEEecCCCCCCCCcHH
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNIT-----------VSGYPEKQE--T-FA--RILGYCEQNDIHSPHDTLY 111 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~-----------~~g~~~~~~--~-~~--~~igyv~Q~~~~~~~ltv~ 111 (531)
+.+.+||||||||||||+|+|..++ .+|+|. ++|.+.... . .+ ..++|++|+....+. ++.
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~~p--~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~ 104 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKLKP--NLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVK 104 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC--CCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-HHH
Confidence 4455666799999999999997653 357775 667654321 1 11 247899998776663 544
Q ss_pred hH------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 042733 112 DF------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRN 180 (531)
Q Consensus 112 e~------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~ 180 (531)
++ .......+.++++.+++.+..++.+ |||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 105 ~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~ 184 (255)
T cd03236 105 GKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRE 184 (255)
T ss_pred HHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 43 1122345778899999987666554 999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 181 TVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 181 l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
++++|+|||++||+++ .+...||++++|+ |++.+.|-
T Consensus 185 l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~--~~~~~~~~ 221 (255)
T cd03236 185 LAEDDNYVLVVEHDLA-VLDYLSDYIHCLY--GEPGAYGV 221 (255)
T ss_pred HHhcCCEEEEEECCHH-HHHHhCCEEEEEC--CCCCccee
Confidence 9877999999999986 4666899999995 56776664
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=230.88 Aligned_cols=169 Identities=22% Similarity=0.339 Sum_probs=138.5
Q ss_pred EEEEEeEEEEEeCCC-------ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhh
Q 042733 27 YISLNEIVYSVDMPQ-------IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQET 90 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~-------~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~ 90 (531)
.++++||++.|+.+. ..+++|||+.+.+| |||||||-|+|.|+.++ .+|+|.++|.+.....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p--t~G~i~f~g~~i~~~~ 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP--TSGEILFEGKDITKLS 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC--CCceEEEcCcchhhcc
Confidence 356667766665432 25677777777766 99999999999998763 5799999998743211
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCC
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAVEFVANPSIISRDEPIS 164 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPts 164 (531)
.....+++.+.++.+|+.. ..++.. |||||++|||||+.+|+++++|||+|
T Consensus 82 -----------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvS 138 (268)
T COG4608 82 -----------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVS 138 (268)
T ss_pred -----------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchh
Confidence 2345567889999999865 444444 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 165 GLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 165 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
.||...+.+++++|+++.++ |.|.++++||.+ -+...+||+.+|.. |+++..|+.+
T Consensus 139 aLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~-G~iVE~g~~~ 195 (268)
T COG4608 139 ALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYL-GKIVEIGPTE 195 (268)
T ss_pred hcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEec-CceeEecCHH
Confidence 99999999999999999975 999999999987 46778999999996 9999999864
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=228.51 Aligned_cols=173 Identities=16% Similarity=0.139 Sum_probs=132.2
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEE-EcCcccchhhhcceEEEEecCCCCCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNIT-VSGYPEKQETFARILGYCEQNDIHSPH 107 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~-~~g~~~~~~~~~~~igyv~Q~~~~~~~ 107 (531)
.++|+++.++. ..+.+.+||||||||||+|+|+|..++ .+|++. ++|... .+.++..+++.
T Consensus 2 vl~~vs~~i~~------Ge~~~l~G~NGsGKSTLlk~i~Gl~~~--~sG~i~~~~~~~~----------~~~~~~~l~~~ 63 (213)
T PRK15177 2 VLDKTDFVMGY------HEHIGILAAPGSGKTTLTRLLCGLDAP--DEGDFIGLRGDAL----------PLGANSFILPG 63 (213)
T ss_pred eeeeeeEEEcC------CCEEEEECCCCCCHHHHHHHHhCCccC--CCCCEEEecCcee----------ccccccccCCc
Confidence 37888888863 367889999999999999999997543 357775 555321 12245567888
Q ss_pred CcHHhHHHH--------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 042733 108 DTLYDFTHC--------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV 174 (531)
Q Consensus 108 ltv~e~~~~--------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i 174 (531)
+|+.|+... ..+..+...+..++....++.+ |||||++||++|+.+|++++|||||++||+.++..+
T Consensus 64 ltv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~ 143 (213)
T PRK15177 64 LTGEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRM 143 (213)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHH
Confidence 999998321 1111223335566666555544 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 175 IRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 175 ~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
.+.+.+..+ ++|+|++||+++ .+...||++++|++ |++++.|+.+
T Consensus 144 ~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 188 (213)
T PRK15177 144 QAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLH-GKITMCEDLA 188 (213)
T ss_pred HHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEEC-CeEEEeCCHH
Confidence 998865443 468999999987 46678999999986 9999998863
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-28 Score=221.87 Aligned_cols=190 Identities=22% Similarity=0.298 Sum_probs=159.3
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcC-cccc---h-hhh
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSG-YPEK---Q-ETF 91 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g-~~~~---~-~~~ 91 (531)
..+.++|++.+++ ...+|+++|+.+.|| ||||||+|++|+|...+ ..|++.+.| .+.. + ...
T Consensus 4 ~iL~~~~vsVsF~--GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp--~~G~v~f~g~~dl~~~~e~~IA 79 (249)
T COG4674 4 IILYLDGVSVSFG--GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP--QEGEVLFDGDTDLTKLPEHRIA 79 (249)
T ss_pred ceEEEeceEEEEc--ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC--CcceEEEcCchhhccCCHHHHH
Confidence 4577888888774 456788888766655 99999999999998654 368999988 3332 1 223
Q ss_pred cceEEEEecCCCCCCCCcHHhH-------------------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHH
Q 042733 92 ARILGYCEQNDIHSPHDTLYDF-------------------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVA 147 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~~ltv~e~-------------------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA 147 (531)
+.-||--+|-+..|..+||+|| ..+.+.++++.++..||.+.++... ||||++.|+
T Consensus 80 r~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIG 159 (249)
T COG4674 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIG 159 (249)
T ss_pred HhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhh
Confidence 5568888999999999999998 1233467999999999999888776 999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+.++++|++|+||||++|+--....+.-++|+.++. +.+|+++.||+.. +.+++|+|.+|++ |.+...|+.+
T Consensus 160 Mll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~F-vr~~A~~VTVlh~-G~VL~EGsld 231 (249)
T COG4674 160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGF-VREIADKVTVLHE-GSVLAEGSLD 231 (249)
T ss_pred eeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHH-HHHhhheeEEEec-cceeecccHH
Confidence 999999999999999999999999999999999975 6899999999874 7778999999997 9999999864
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=214.69 Aligned_cols=134 Identities=25% Similarity=0.319 Sum_probs=113.3
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEe
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCE 99 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~ 99 (531)
+++|+++.|+ +..+++++|+.+.+| |||||||+++|+|..++ .+|+|.++|. +.++|++
T Consensus 2 ~~~~l~~~~~--~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~~~--------~~i~~~~ 69 (144)
T cd03221 2 ELENLSKTYG--GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWGST--------VKIGYFE 69 (144)
T ss_pred EEEEEEEEEC--CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCe--------EEEEEEc
Confidence 5677777774 235777777777666 99999999999998653 4789999873 4689999
Q ss_pred cCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 042733 100 QNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVR 179 (531)
Q Consensus 100 Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~ 179 (531)
| .+.|||||++|||+|+.+|++++|||||+|||+.++..+.+.++
T Consensus 70 ~-----------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~ 114 (144)
T cd03221 70 Q-----------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALK 114 (144)
T ss_pred c-----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 8 33499999999999999999999999999999999999999998
Q ss_pred HHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 180 NTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 180 ~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
++ ++|++++||+++ ++...||++++|++ |+
T Consensus 115 ~~---~~til~~th~~~-~~~~~~d~v~~l~~-g~ 144 (144)
T cd03221 115 EY---PGTVILVSHDRY-FLDQVATKIIELED-GK 144 (144)
T ss_pred Hc---CCEEEEEECCHH-HHHHhCCEEEEEeC-CC
Confidence 76 479999999986 56678999999985 64
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=216.41 Aligned_cols=201 Identities=22% Similarity=0.263 Sum_probs=169.1
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~ 92 (531)
..|+++||..++..+ +.||++||+.+++| |||||||.++|+|.+.--..+|+|.++|.++.. ++.|
T Consensus 2 ~~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 2 MMLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred ceeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 368999999998632 58999999988766 999999999999987655678999999987642 3456
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH--------------HHHHHHHHHHHhcCCch-hhhccH------HHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH--------------CLYMFIEEGMELVELNP-FRQALF------EQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~--------------~~~~~~~~~l~~l~l~~-~~~~~~------GerqRv~iA~aL~ 151 (531)
+-+...+|.|.-.|..++.+.-. +....+++.++.+++++ ..++.+ |||||..|+..++
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~ 160 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL 160 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence 67889999999999999988611 23456777889999987 566665 8999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhcc--CeEEEEccCceeeecCCCCCCchhHH
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSF--DELFLLKQVGQEISVGPLGPSSIHLI 229 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~--d~v~lL~~~G~~v~~G~~~~~~~~~~ 229 (531)
.+|++.+||||-||||..+-+.+.+.+.++++.|.+++++||+.. +.+.. |+|.+|.+ ||++..|.+ ++.
T Consensus 161 lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r--ll~~i~pD~vhvl~~-GrIv~sG~~-----el~ 232 (251)
T COG0396 161 LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR--LLDYIKPDKVHVLYD-GRIVKSGDP-----ELA 232 (251)
T ss_pred cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHhhcCCCEEEEEEC-CEEEecCCH-----HHH
Confidence 999999999999999999999999999999999999999999854 66665 99999996 999999986 466
Q ss_pred HHHHhh
Q 042733 230 SYFEKI 235 (531)
Q Consensus 230 ~~f~~~ 235 (531)
+.+++-
T Consensus 233 ~~le~~ 238 (251)
T COG0396 233 EELEEK 238 (251)
T ss_pred HHHHHh
Confidence 666654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-27 Score=257.69 Aligned_cols=179 Identities=19% Similarity=0.219 Sum_probs=145.0
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..++++|+++.|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.+++ + ..+|
T Consensus 323 ~~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~-~-------~~i~ 390 (556)
T PRK11819 323 KVIEAENLSKSFG--DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGE-T-------VKLA 390 (556)
T ss_pred eEEEEEeEEEEEC--CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECC-c-------eEEE
Confidence 4699999999995 457999999888877 99999999999997653 468888843 1 1589
Q ss_pred EEecCC-CCCCCCcHHhHHHH---------HHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQND-IHSPHDTLYDFTHC---------LYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~-~~~~~ltv~e~~~~---------~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|++|+. .+++.+|+.|+... .....++.++.+++.+ ..++.+ ||||||+||++|+.+|++|+||
T Consensus 391 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 470 (556)
T PRK11819 391 YVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD 470 (556)
T ss_pred EEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999986 67888999987321 1223456788999863 345444 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee-ecCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI-SVGP 220 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v-~~G~ 220 (531)
|||+|||+.++..+.+.|+++. | |||++||+++ .+...||++++|+++|++. +.|+
T Consensus 471 EPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~ 527 (556)
T PRK11819 471 EPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGN 527 (556)
T ss_pred CCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCC
Confidence 9999999999999999999872 4 8999999987 5777899999998546766 4554
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=255.65 Aligned_cols=179 Identities=17% Similarity=0.210 Sum_probs=144.4
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..++++|++++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.+++ . ..+|
T Consensus 321 ~~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~-~-------~~i~ 388 (552)
T TIGR03719 321 KVIEAENLSKGFG--DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGE-T-------VKLA 388 (552)
T ss_pred eEEEEeeEEEEEC--CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECC-c-------eEEE
Confidence 4699999999995 457999999887777 99999999999998653 468888843 1 1589
Q ss_pred EEecCC-CCCCCCcHHhHHHH---------HHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQND-IHSPHDTLYDFTHC---------LYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~-~~~~~ltv~e~~~~---------~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|++|+. .+++.+|+.|+... .....++.++.+++.+ ..++.+ ||||||+||++|+.+|++|+||
T Consensus 389 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLD 468 (552)
T TIGR03719 389 YVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLD 468 (552)
T ss_pred EEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 999986 47788999987221 1223557889999864 345444 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee-ecCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI-SVGP 220 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v-~~G~ 220 (531)
|||+|||+.+++.+.+.|+++. + |||++|||++ .+...||++++|+++|+++ +.|+
T Consensus 469 EPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~ 525 (552)
T TIGR03719 469 EPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGN 525 (552)
T ss_pred CCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCC
Confidence 9999999999999999999873 3 8999999986 4677899999998546766 4454
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-27 Score=282.52 Aligned_cols=180 Identities=18% Similarity=0.260 Sum_probs=146.1
Q ss_pred EEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEc-Ccccc---hhhhc
Q 042733 27 YISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVS-GYPEK---QETFA 92 (531)
Q Consensus 27 ~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~-g~~~~---~~~~~ 92 (531)
.|+++||+++|+.. +.++|+|+|+.+++| |||||||+++|+|..++ .+|+|.++ |.+.. ...+|
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~i~~g~~i~~~~~~~lr 459 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP--TEGDIIINDSHNLKDINLKWWR 459 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC--CCCeEEEeCCcchhhCCHHHHH
Confidence 69999999999743 246999999999988 99999999999998653 46899995 55543 23467
Q ss_pred ceEEEEecCCCCCCCCcHHhHHHH--------------------------------------------------------
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTHC-------------------------------------------------------- 116 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~~-------------------------------------------------------- 116 (531)
+.+|||+|++.+++ .|++|+...
T Consensus 460 ~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 538 (1466)
T PTZ00265 460 SKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538 (1466)
T ss_pred HhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence 88999999998886 599987321
Q ss_pred ------HHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 042733 117 ------LYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV 174 (531)
Q Consensus 117 ------~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i 174 (531)
..+.+.++++.+++.+..+ .+.|||||++|||||+++|++|+|||||++||+.++..+
T Consensus 539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i 618 (1466)
T PTZ00265 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV 618 (1466)
T ss_pred cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 0123555666666654421 122999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 175 IRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 175 ~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
.+.|+++++ +|+|+|+++|+++. .+.||++++|++
T Consensus 619 ~~~L~~~~~~~g~TvIiIsHrls~--i~~aD~Iivl~~ 654 (1466)
T PTZ00265 619 QKTINNLKGNENRITIIIAHRLST--IRYANTIFVLSN 654 (1466)
T ss_pred HHHHHHHhhcCCCEEEEEeCCHHH--HHhCCEEEEEeC
Confidence 999999976 58999999999863 468999999986
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-27 Score=219.46 Aligned_cols=142 Identities=20% Similarity=0.230 Sum_probs=113.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
++.+.+||||||||||+|+|+|..++ .+|+|.++|. .++|++|+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~---------~i~~~~q~~~----------------------- 71 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIP--NGDNDEWDGI---------TPVYKPQYID----------------------- 71 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC--CCcEEEECCE---------EEEEEcccCC-----------------------
Confidence 35566777799999999999997653 4689999874 3789988642
Q ss_pred hcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEecCCchHHHhccCe
Q 042733 127 LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMG-RTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~d~ 205 (531)
.+.|||||++|||+|+.+|++++|||||+|||+.++..+.+.++++++++ .|||++||+++ .+...||+
T Consensus 72 ---------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~ 141 (177)
T cd03222 72 ---------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDR 141 (177)
T ss_pred ---------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCE
Confidence 34599999999999999999999999999999999999999999998764 89999999986 46678999
Q ss_pred EEEEccCceeeec--CCCCCCchhHHHHHH
Q 042733 206 LFLLKQVGQEISV--GPLGPSSIHLISYFE 233 (531)
Q Consensus 206 v~lL~~~G~~v~~--G~~~~~~~~~~~~f~ 233 (531)
+++|++ +-.++. |+|....+..-.|+.
T Consensus 142 i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 170 (177)
T cd03222 142 IHVFEG-EPGVYGIASQPKGTREGINRFLR 170 (177)
T ss_pred EEEEcC-CCccceeccCCcchhHHHHHHHH
Confidence 999986 444443 665433333334543
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=272.92 Aligned_cols=200 Identities=25% Similarity=0.343 Sum_probs=171.7
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~ 92 (531)
..+..+++++.|+...+ +.+++|+.+++| ||||||++|+|+|..+. .+|++.++|.+... .+.+
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~--t~G~a~i~g~~i~~~~~~~~~~ 639 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP--TSGEALIKGHDITVSTDFQQVR 639 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC--CcceEEEecCccccccchhhhh
Confidence 45788899999975433 888888777765 99999999999998653 46899999987642 2367
Q ss_pred ceEEEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 93 RILGYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
+.+||+||.|.+.+.+|.+|. ....++.++..++.++|.+.+++.+ |+|||+++|.|++.+|++
T Consensus 640 ~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~v 719 (885)
T KOG0059|consen 640 KQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSV 719 (885)
T ss_pred hhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCE
Confidence 889999999999999999998 2244556889999999999998877 899999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCCchhHHHHHHh
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEK 234 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~~~~~~~~f~~ 234 (531)
++|||||+|+||.+++.+++++++++++|+.||+|||..+ |...+|||+.+|.+ |++...|++ +++...|..
T Consensus 720 i~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~-G~l~ciGs~----q~LKsrfG~ 791 (885)
T KOG0059|consen 720 ILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVI-GQLRCIGSP----QELKSRYGS 791 (885)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeec-CeeEEecCh----HHHHhhcCC
Confidence 9999999999999999999999999998889999999987 67789999999996 999999997 455555543
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=259.27 Aligned_cols=180 Identities=21% Similarity=0.279 Sum_probs=145.5
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
...|+++|+++.|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.+++. ..+
T Consensus 310 ~~~l~~~~l~~~y~--~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~--------~~i 377 (638)
T PRK10636 310 NPLLKMEKVSAGYG--DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGEIGLAKG--------IKL 377 (638)
T ss_pred CceEEEEeeEEEeC--CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCC--------EEE
Confidence 34699999999995 457999999887776 99999999999997643 3688887631 258
Q ss_pred EEEecCC--CCCCCCcHHhHH-----HHHHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 96 GYCEQND--IHSPHDTLYDFT-----HCLYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 96 gyv~Q~~--~~~~~ltv~e~~-----~~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
||++|+. .+.+..|+.+.. ......+.+.++.+++.. ..++.+ ||||||+||++|+.+|++||||||
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEP 457 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEP 457 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999974 345666776642 122345778899999853 445544 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee-ecCCC
Q 042733 163 ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI-SVGPL 221 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v-~~G~~ 221 (531)
|+|||+.++..+.+.|+++ .| |||++|||+. .+...||++++|++ |+++ +.|+.
T Consensus 458 t~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~g~~ 512 (638)
T PRK10636 458 TNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFDGDL 512 (638)
T ss_pred CCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcCCCH
Confidence 9999999999999999987 34 9999999986 47778999999986 8987 77875
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-27 Score=265.81 Aligned_cols=190 Identities=23% Similarity=0.317 Sum_probs=154.7
Q ss_pred ceEEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhh
Q 042733 25 PHYISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETF 91 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~ 91 (531)
.-.|+++||+|+|+.. +.++|+|+|+++.+| ||||||.+-+|-...++ ..|.|.++|.+++. ..+
T Consensus 985 ~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp--~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 985 KGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP--DAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred eeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEEECCcccccCCHHHH
Confidence 4469999999999853 347999999999888 99999999999997663 57999999988754 457
Q ss_pred cceEEEEecCCCCCCCCcHHhHH-----HHHHHHHHHHHHhcC-------CchhhhccH---------HHHHHHHHHHHH
Q 042733 92 ARILGYCEQNDIHSPHDTLYDFT-----HCLYMFIEEGMELVE-------LNPFRQALF---------EQRKRLTVAVEF 150 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~~ltv~e~~-----~~~~~~~~~~l~~l~-------l~~~~~~~~---------GerqRv~iA~aL 150 (531)
|+++|.|.|+|.+| +-|++||. +.....+.++.+..+ |.+-.|+.+ |||||++||||+
T Consensus 1063 R~~i~lVsQEP~LF-~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAi 1141 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLF-NGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAI 1141 (1228)
T ss_pred HHhcceeccCchhh-cccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHH
Confidence 89999999999886 57999982 111222333333333 223334444 899999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++||+||||||.||.||+++.+.+.+.|.+.. .|+|.|++.|+++ ....+|.|.++++ |+++..|+-
T Consensus 1142 lRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1142 LRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred HcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEEC-CEEEecccH
Confidence 99999999999999999999999999998874 5899999999987 3678999999996 999999984
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-26 Score=256.13 Aligned_cols=171 Identities=22% Similarity=0.220 Sum_probs=139.2
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..++++|+++.|+. ++.+|+|+|+.+++| |||||||+|+|+|..+. .+|++.+++ ++.++
T Consensus 450 ~~i~~~nv~~~~~~-~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~--~~G~i~~~~--------~~~i~ 518 (659)
T TIGR00954 450 NGIKFENIPLVTPN-GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV--YGGRLTKPA--------KGKLF 518 (659)
T ss_pred CeEEEEeeEEECCC-CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEeecC--------CCcEE
Confidence 35899999999853 347999999998887 99999999999997553 246776643 45799
Q ss_pred EEecCCCCCCCCcHHhHHH------------HHHHHHHHHHHhcCCchhhhc--------------cHHHHHHHHHHHHH
Q 042733 97 YCEQNDIHSPHDTLYDFTH------------CLYMFIEEGMELVELNPFRQA--------------LFEQRKRLTVAVEF 150 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~------------~~~~~~~~~l~~l~l~~~~~~--------------~~GerqRv~iA~aL 150 (531)
|++|++.+++. |++|+.. ...+.+++.++.+++.+..++ +.|||||++|||+|
T Consensus 519 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal 597 (659)
T TIGR00954 519 YVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLF 597 (659)
T ss_pred EECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHH
Confidence 99999987776 9999721 113456778888888765432 33999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCc
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVG 213 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G 213 (531)
+++|++++|||||+|||+.+++.+.+.+++ .|+|+|+++|+++ ..+.||++++|+.+|
T Consensus 598 ~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~~~g 655 (659)
T TIGR00954 598 YHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMDGRG 655 (659)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEeCCC
Confidence 999999999999999999999999998876 3899999999987 357899999997544
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=237.03 Aligned_cols=187 Identities=21% Similarity=0.313 Sum_probs=147.9
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
.-.++++|++|.|. +.+++|+|||++++|| ||||||++|+|....+. .+|.|.++|.+++. ...|
T Consensus 535 ~G~i~fsnvtF~Y~-p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv--~sGsI~iDgqdIrnvt~~SLR 611 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYD-PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV--NSGSITIDGQDIRNVTQSSLR 611 (790)
T ss_pred CCeEEEEEeEEecC-CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc--cCceEEEcCchHHHHHHHHHH
Confidence 34789999999997 5779999999999999 99999999999997552 46899999998753 5678
Q ss_pred ceEEEEecCCCCCCCCcHHhH---------HHH-----HHHHHHHHHHhcCCchhhhccH---------HHHHHHHHHHH
Q 042733 93 RILGYCEQNDIHSPHDTLYDF---------THC-----LYMFIEEGMELVELNPFRQALF---------EQRKRLTVAVE 149 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~---------~~~-----~~~~~~~~l~~l~l~~~~~~~~---------GerqRv~iA~a 149 (531)
+.||.||||..++. .|+..+ .++ +...+.+. .++..+-.++.+ ||||||+|||+
T Consensus 612 s~IGVVPQDtvLFN-dTI~yNIryak~~AsneevyaAAkAA~IHdr--Il~fPegY~t~VGERGLkLSGGEKQRVAiARt 688 (790)
T KOG0056|consen 612 SSIGVVPQDTVLFN-DTILYNIRYAKPSASNEEVYAAAKAAQIHDR--ILQFPEGYNTRVGERGLKLSGGEKQRVAIART 688 (790)
T ss_pred HhcCcccCcceeec-ceeeeheeecCCCCChHHHHHHHHHhhHHHH--HhcCchhhhhhhhhcccccCCcchhhHHHHHH
Confidence 99999999977653 444333 111 11112221 123333333333 89999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++++|.+++|||.||.||..+.+.+...|.++++ ++|-|++.|..+. .-.+|.++++++ |+++..|.-
T Consensus 689 iLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~-G~IvErG~H 756 (790)
T KOG0056|consen 689 ILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVISN-GRIVERGRH 756 (790)
T ss_pred HhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEeC-CeEeecCcH
Confidence 9999999999999999999999999999999986 6888999999873 346899999996 999999974
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-26 Score=251.74 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=134.6
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
|+++||+++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.. .++|+
T Consensus 2 i~i~nls~~~g--~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p--d~G~I~~~~~~--------~i~~~ 69 (638)
T PRK10636 2 IVFSSLQIRRG--VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISA--DGGSYTFPGNW--------QLAWV 69 (638)
T ss_pred EEEEEEEEEeC--CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCCC--------EEEEE
Confidence 68899999995 457899999887776 99999999999997543 46888887742 36777
Q ss_pred ecCCCCCCCCcHHhH------------------------------HH--------HHHHHHHHHHHhcCCc-hhhhccH-
Q 042733 99 EQNDIHSPHDTLYDF------------------------------TH--------CLYMFIEEGMELVELN-PFRQALF- 138 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~------------------------------~~--------~~~~~~~~~l~~l~l~-~~~~~~~- 138 (531)
+|+.... ..++.+. .. ....+++++++.+|+. +..++.+
T Consensus 70 ~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 148 (638)
T PRK10636 70 NQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS 148 (638)
T ss_pred ecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh
Confidence 7643221 1222111 00 0123567788999986 3445443
Q ss_pred ----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 139 ----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 139 ----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+...||++++|++ |+
T Consensus 149 ~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~L~~-G~ 223 (638)
T PRK10636 149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIVDKIIHIEQ-QS 223 (638)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhcCEEEEEeC-CE
Confidence 9999999999999999999999999999999999999998775 569999999976 46778999999986 88
Q ss_pred ee-ecCCC
Q 042733 215 EI-SVGPL 221 (531)
Q Consensus 215 ~v-~~G~~ 221 (531)
+. |.|+.
T Consensus 224 i~~~~g~~ 231 (638)
T PRK10636 224 LFEYTGNY 231 (638)
T ss_pred EEEecCCH
Confidence 85 56654
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-26 Score=208.77 Aligned_cols=144 Identities=28% Similarity=0.499 Sum_probs=117.1
Q ss_pred EEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEEE
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGY 97 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~igy 97 (531)
++++++.|+ ++.+++++++.+.+| |||||||+++|+|..+. ..|++.++|.+... ...++.++|
T Consensus 2 ~~~~~~~~~--~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 2 IENLSFRYG--GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred eEEEEEEeC--CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccCCHHHHHhceEE
Confidence 456666664 234666666666555 99999999999997653 46899999975432 235567999
Q ss_pred EecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 042733 98 CEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRM 177 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~ 177 (531)
++| .+.|||||++||++++.+|++++|||||+|||+.++..+.+.
T Consensus 78 ~~q-----------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~ 122 (157)
T cd00267 78 VPQ-----------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122 (157)
T ss_pred Eee-----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 998 334999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 178 VRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 178 L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
+++++++++|++++||+++ ++...||+++.+++ |+
T Consensus 123 l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g~ 157 (157)
T cd00267 123 LRELAEEGRTVIIVTHDPE-LAELAADRVIVLKD-GK 157 (157)
T ss_pred HHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-cC
Confidence 9998777899999999986 46667899999985 54
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-26 Score=212.76 Aligned_cols=153 Identities=21% Similarity=0.260 Sum_probs=118.5
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHD 108 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~l 108 (531)
.++|+|++++. .++.+.+||||||||||||+|.+ + +|++.+++.... ..++.++|++|
T Consensus 10 ~l~~isl~i~~------G~~~~l~G~nG~GKSTLl~~il~--~----~G~v~~~~~~~~--~~~~~~~~~~q-------- 67 (176)
T cd03238 10 NLQNLDVSIPL------NVLVVVTGVSGSGKSTLVNEGLY--A----SGKARLISFLPK--FSRNKLIFIDQ-------- 67 (176)
T ss_pred eecceEEEEcC------CCEEEEECCCCCCHHHHHHHHhh--c----CCcEEECCcccc--cccccEEEEhH--------
Confidence 47788888763 25677888889999999999974 2 467777765321 12334788877
Q ss_pred cHHhHHHHHHHHHHHHHHhcCCchh-hhcc-----HHHHHHHHHHHHHhhC--CCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 042733 109 TLYDFTHCLYMFIEEGMELVELNPF-RQAL-----FEQRKRLTVAVEFVAN--PSIISRDEPISGLDARAATTVIRMVRN 180 (531)
Q Consensus 109 tv~e~~~~~~~~~~~~l~~l~l~~~-~~~~-----~GerqRv~iA~aL~~~--p~lllLDEPtsgLD~~~~~~i~~~L~~ 180 (531)
.+.++.+++... .+.. .|||||++||++|+.+ |++++|||||+|||+.+++.+.+.|++
T Consensus 68 -------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~ 134 (176)
T cd03238 68 -------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG 134 (176)
T ss_pred -------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 235666776542 3333 3999999999999999 999999999999999999999999999
Q ss_pred HHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 181 TVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 181 l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
++++|+|||++||+++. + +.+|++++|.+ |+..+.|
T Consensus 135 ~~~~g~tvIivSH~~~~-~-~~~d~i~~l~~-g~~~~~~ 170 (176)
T cd03238 135 LIDLGNTVILIEHNLDV-L-SSADWIIDFGP-GSGKSGG 170 (176)
T ss_pred HHhCCCEEEEEeCCHHH-H-HhCCEEEEECC-CCCCCCc
Confidence 98779999999999863 4 67999999975 5544333
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=251.44 Aligned_cols=180 Identities=19% Similarity=0.256 Sum_probs=143.3
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
...|+++||+++|+ ++.+|+++|+.+.+| |||||||||+|+|..++ .+|+|.+ |.. -.+
T Consensus 317 ~~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~-------~~i 384 (635)
T PRK11147 317 KIVFEMENVNYQID--GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTK-------LEV 384 (635)
T ss_pred CceEEEeeeEEEEC--CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCC-------cEE
Confidence 34699999999995 457999999887776 99999999999997543 4688887 432 158
Q ss_pred EEEecCC-CCCCCCcHHhHHHH---------HHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHHHhhCCCeEEE
Q 042733 96 GYCEQND-IHSPHDTLYDFTHC---------LYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVEFVANPSIISR 159 (531)
Q Consensus 96 gyv~Q~~-~~~~~ltv~e~~~~---------~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~aL~~~p~lllL 159 (531)
||++|+. .+++.+||.|+... ....+.+.++.+++. +..++.+ ||||||+||++|+.+|++|||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlL 464 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLIL 464 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999975 57888999987321 123456778888885 3444444 999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeee-cCC
Q 042733 160 DEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS-VGP 220 (531)
Q Consensus 160 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~-~G~ 220 (531)
||||+|||+.++..+.+.|+++ +.|||++|||.. .+...||+++++.++|++.. .|+
T Consensus 465 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~ 522 (635)
T PRK11147 465 DEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGG 522 (635)
T ss_pred cCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCC
Confidence 9999999999999999999876 459999999976 46778999999972377754 444
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=208.83 Aligned_cols=170 Identities=21% Similarity=0.260 Sum_probs=138.5
Q ss_pred CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcceEEEEecCCCCCCCC
Q 042733 41 QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARILGYCEQNDIHSPHD 108 (531)
Q Consensus 41 ~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~igyv~Q~~~~~~~l 108 (531)
+..+|+++|+.+.+| |||||||+|+++.+.++ .+|.+.+.|.+.. .+.+|+.++||.|.+.+++ .
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp--~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg-~ 91 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG-D 91 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC--CCceEEEcCccccccChHHHHHHHHHHHcCccccc-c
Confidence 345666666666655 99999999999998764 5799999998764 3568899999999999886 6
Q ss_pred cHHhH---------HHHHHHHHHHHHHhcCCchh------hhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 042733 109 TLYDF---------THCLYMFIEEGMELVELNPF------RQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATT 173 (531)
Q Consensus 109 tv~e~---------~~~~~~~~~~~l~~l~l~~~------~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~ 173 (531)
||+++ .........+.++.+++.+. .+.+.|||||++|+|.|..-|+||+||||||.||+.+++.
T Consensus 92 tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ 171 (223)
T COG4619 92 TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRN 171 (223)
T ss_pred chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHH
Confidence 89887 11123456677888888653 2333499999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 174 VIRMVRNTV-DMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 174 i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
+-+++.++. .+.+.++.+|||++. ..+.+|+++-+.. |++
T Consensus 172 ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~-G~~ 212 (223)
T COG4619 172 IEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQP-GHA 212 (223)
T ss_pred HHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEecc-Ccc
Confidence 999999887 568999999999984 5678999999986 653
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=204.47 Aligned_cols=206 Identities=18% Similarity=0.236 Sum_probs=159.0
Q ss_pred hhhhhhcccCCC---ccccccceEEEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcC
Q 042733 7 AAIEANNHNKRG---MVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSG 83 (531)
Q Consensus 7 ~~i~~~~~~~~~---~~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g 83 (531)
..+||+|++|.. +.+......=.++.+||+...+. --..+|.||||||||.|+|+|..++ .+|++.+||
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~Q------TlaiIG~NGSGKSTLakMlaGmi~P--TsG~il~n~ 74 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQ------TLAIIGENGSGKSTLAKMLAGMIEP--TSGEILIND 74 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCc------EEEEEccCCCcHhHHHHHHhcccCC--CCceEEECC
Confidence 358888888862 22222222235667777775322 2356788899999999999998764 579999999
Q ss_pred cccch---hhhcceEEEEecCCC--CCCCCcHHhH------------HHHHHHHHHHHHHhcCCch-hhhccH-----HH
Q 042733 84 YPEKQ---ETFARILGYCEQNDI--HSPHDTLYDF------------THCLYMFIEEGMELVELNP-FRQALF-----EQ 140 (531)
Q Consensus 84 ~~~~~---~~~~~~igyv~Q~~~--~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~-~~~~~~-----Ge 140 (531)
.+..- ....+.|-+++|+++ +-|.+.+.+. ...+.+++-+.++.+||-+ .++-.+ ||
T Consensus 75 ~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~Q 154 (267)
T COG4167 75 HPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQ 154 (267)
T ss_pred ccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchh
Confidence 87532 233467899999975 4455555443 2445667888899999854 344433 99
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 141 RKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 141 rqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
||||++||||+.+|++++.||..++||...+-++.++..++.++ |.+-|.++.+.. -+.+..|+|++|++ |+++..|
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~E-G~vvE~G 232 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHE-GEVVERG 232 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEec-CceeecC
Confidence 99999999999999999999999999999999999999999865 999999999987 47789999999997 9999999
Q ss_pred CCC
Q 042733 220 PLG 222 (531)
Q Consensus 220 ~~~ 222 (531)
.+.
T Consensus 233 ~t~ 235 (267)
T COG4167 233 STA 235 (267)
T ss_pred Chh
Confidence 864
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=251.79 Aligned_cols=178 Identities=19% Similarity=0.192 Sum_probs=138.8
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..++++|+++.|+. .+.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.+++ +..+|
T Consensus 507 ~~L~~~~ls~~y~~-~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~--------~~~ig 575 (718)
T PLN03073 507 PIISFSDASFGYPG-GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSA--------KVRMA 575 (718)
T ss_pred ceEEEEeeEEEeCC-CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECC--------ceeEE
Confidence 56999999999952 346899999877766 99999999999997653 357887754 23589
Q ss_pred EEecCCCCCCCCcHHhHH---------HHHHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 97 YCEQNDIHSPHDTLYDFT---------HCLYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~---------~~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
|++|+.. ..+++.++. ......+.+.++.+++.+ ..++.+ ||||||+||++|+.+|++|+|||
T Consensus 576 yv~Q~~~--~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE 653 (718)
T PLN03073 576 VFSQHHV--DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653 (718)
T ss_pred EEecccc--ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999752 233333220 011345677899999873 444443 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee-ecCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI-SVGPL 221 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v-~~G~~ 221 (531)
||+|||+.++..+.+.|++. +| |||++|||+. .+...||++++|.+ |+++ +.|+.
T Consensus 654 PT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~~ 709 (718)
T PLN03073 654 PSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGTF 709 (718)
T ss_pred CCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCCH
Confidence 99999999999998888764 34 9999999987 46778999999986 8988 67764
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-26 Score=272.27 Aligned_cols=181 Identities=20% Similarity=0.232 Sum_probs=143.6
Q ss_pred eEEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 26 HYISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
..++++|++++|+.. ++++|+|+|+.+++| |||||||+++|.|..++ .+|++. .+++.+
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~G~i~---------~~~~~I 681 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH--AETSSV---------VIRGSV 681 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc--cCCCEE---------EecCcE
Confidence 368999999999742 357999999999998 99999999999997653 233331 246679
Q ss_pred EEEecCCCCCCCCcHHhHH----HHHHHHHHHHHHhcCCchhhh-------cc---------HHHHHHHHHHHHHhhCCC
Q 042733 96 GYCEQNDIHSPHDTLYDFT----HCLYMFIEEGMELVELNPFRQ-------AL---------FEQRKRLTVAVEFVANPS 155 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~----~~~~~~~~~~l~~l~l~~~~~-------~~---------~GerqRv~iA~aL~~~p~ 155 (531)
+||+|++.++. .|++||. ....++.+++++..++.+..+ +. .|||||++||||+.++|+
T Consensus 682 ayv~Q~p~Lf~-gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 760 (1495)
T PLN03232 682 AYVPQVSWIFN-ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1495)
T ss_pred EEEcCcccccc-ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCC
Confidence 99999998874 6999982 123345666776666644222 22 289999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 156 IISRDEPISGLDARAATTVIRM-VRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++||||||+||+++++++++. ++.. .+++|+|++||+++ ....+|+|++|++ |+++..|+.+
T Consensus 761 IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~-G~i~~~Gt~~ 824 (1495)
T PLN03232 761 IYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSE-GMIKEEGTFA 824 (1495)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeC-CEEEEecCHH
Confidence 9999999999999999998765 4443 36899999999986 4667999999986 9999999864
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-25 Score=224.66 Aligned_cols=194 Identities=18% Similarity=0.300 Sum_probs=156.2
Q ss_pred EEEEEeEEEEEeCC--CccccccEEEEEcCC---------CchHHHHHHHHhCCCCC---ceEEEEEEEcCcccc---hh
Q 042733 27 YISLNEIVYSVDMP--QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG---GYITRNITVSGYPEK---QE 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~--~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~---g~~~G~i~~~g~~~~---~~ 89 (531)
-++++||+..+... ...++++||+.+.+| |||||-..+.+.|+.+. ...+|+|.++|.+.- +.
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 47888888887633 347899999999988 99999999999996543 234789999998642 22
Q ss_pred hhc----ceEEEEecCCC--CCCCCcHHhH------------HHHHHHHHHHHHHhcCCchhhhccH--------HHHHH
Q 042733 90 TFA----RILGYCEQNDI--HSPHDTLYDF------------THCLYMFIEEGMELVELNPFRQALF--------EQRKR 143 (531)
Q Consensus 90 ~~~----~~igyv~Q~~~--~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~~~~~~~--------GerqR 143 (531)
..+ .+|++++|++. +.|-.|+... ....+.++.+.++.+|+.+-..+.- |||||
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQR 165 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQR 165 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhH
Confidence 222 47999999975 4555566543 2334566778889999876443322 99999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|.||+||+.+|++||.||||+.||..-+.+|+++|+++.++ |.+++++|||++. +-..+|||.+|.+ |+++..|+.+
T Consensus 166 VMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADrV~VM~~-G~ivE~~~t~ 243 (534)
T COG4172 166 VMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADRVYVMQH-GEIVETGTTE 243 (534)
T ss_pred HHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhhEEEEec-cEEeecCcHH
Confidence 99999999999999999999999999999999999999875 9999999999874 6678899999986 9999999864
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-25 Score=211.05 Aligned_cols=176 Identities=23% Similarity=0.214 Sum_probs=145.4
Q ss_pred cccccEEEEEc---------CCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhH
Q 042733 43 GDLNSLSGAFR---------PGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDF 113 (531)
Q Consensus 43 ~iL~~vs~~i~---------~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~ 113 (531)
.+|+|||+++. +||||||||||+|+|..++ .+|++.++|.....-. -.. .+.|.+|.+||
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~P--t~G~v~v~G~v~~li~--lg~-------Gf~pelTGreN 109 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKP--TSGKVKVTGKVAPLIE--LGA-------GFDPELTGREN 109 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCC--CCceEEEcceEehhhh--ccc-------CCCcccchHHH
Confidence 46666665555 4599999999999997653 4789999886432111 112 34467899998
Q ss_pred -----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 042733 114 -----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRM 177 (531)
Q Consensus 114 -----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~ 177 (531)
..+.+..++++++.-+|.++.|.++ ||+-|+++|.+...+|++|++||-.+-.|+.-+++..+.
T Consensus 110 i~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~r 189 (249)
T COG1134 110 IYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLER 189 (249)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHH
Confidence 3556678899999999999988887 999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCCchhHHHHHHhh
Q 042733 178 VRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKI 235 (531)
Q Consensus 178 L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~~~~~~~~f~~~ 235 (531)
++++.++++|+|++||+++ .+.+.||++++|++ |++...|.+ +++.++|++.
T Consensus 190 l~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~-G~i~~~G~~----~~vi~~Y~~~ 241 (249)
T COG1134 190 LNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEH-GQIRMEGSP----EEVIPAYEED 241 (249)
T ss_pred HHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeC-CEEEEcCCH----HHHHHHHHHh
Confidence 9999888899999999988 58899999999996 999999997 4566766553
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=247.64 Aligned_cols=178 Identities=22% Similarity=0.244 Sum_probs=130.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.|+++|++++|+ .+.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.. .++|
T Consensus 3 ~l~i~~ls~~~~--~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p--~~G~I~~~~~~--------~~~~ 70 (635)
T PRK11147 3 LISIHGAWLSFS--DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL--DDGRIIYEQDL--------IVAR 70 (635)
T ss_pred EEEEeeEEEEeC--CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEeCCCC--------EEEE
Confidence 467888888885 356888888777766 99999999999997543 46888887631 1345
Q ss_pred EecCCCCCCCCcHHhH------------------------------H---------------HHHHHHHHHHHHhcCCch
Q 042733 98 CEQNDIHSPHDTLYDF------------------------------T---------------HCLYMFIEEGMELVELNP 132 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~------------------------------~---------------~~~~~~~~~~l~~l~l~~ 132 (531)
++|.+......++.+. . .....+++++++.+|+..
T Consensus 71 l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 150 (635)
T PRK11147 71 LQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP 150 (635)
T ss_pred eccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC
Confidence 5553321111122111 0 011235677788888852
Q ss_pred ---hhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 133 ---FRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 133 ---~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
....+.||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||+. .+...||+++.|
T Consensus 151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~-~l~~~~d~i~~L 226 (635)
T PRK11147 151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRS-FIRNMATRIVDL 226 (635)
T ss_pred CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHH-HHHHhcCeEEEE
Confidence 1222339999999999999999999999999999999999999999887 359999999986 466789999999
Q ss_pred ccCceee-ecCCC
Q 042733 210 KQVGQEI-SVGPL 221 (531)
Q Consensus 210 ~~~G~~v-~~G~~ 221 (531)
++ |+++ +.|+.
T Consensus 227 ~~-G~i~~~~g~~ 238 (635)
T PRK11147 227 DR-GKLVSYPGNY 238 (635)
T ss_pred EC-CEEEEecCCH
Confidence 86 8887 55654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=269.49 Aligned_cols=179 Identities=21% Similarity=0.295 Sum_probs=144.7
Q ss_pred EEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEE-EEEEEcCcccchhhhcceE
Q 042733 27 YISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYIT-RNITVSGYPEKQETFARIL 95 (531)
Q Consensus 27 ~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~-G~i~~~g~~~~~~~~~~~i 95 (531)
.++++|++++|+.. ++++|+|+|+.+++| |||||||+++|.|..+. .+ |+|.+ ++.+
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~GG~I~l----------~~~I 681 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP--RSDASVVI----------RGTV 681 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc--CCCceEEE----------cCeE
Confidence 68999999999743 357999999999998 99999999999997652 35 66653 4579
Q ss_pred EEEecCCCCCCCCcHHhHH----HHHHHHHHHHHHhcCCchhhh-------ccH---------HHHHHHHHHHHHhhCCC
Q 042733 96 GYCEQNDIHSPHDTLYDFT----HCLYMFIEEGMELVELNPFRQ-------ALF---------EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~----~~~~~~~~~~l~~l~l~~~~~-------~~~---------GerqRv~iA~aL~~~p~ 155 (531)
+||+|++.++. .|++||. ....++.+++++..++.+..+ +.+ |||||++||||+.++|+
T Consensus 682 ayv~Q~p~Lfn-gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~ 760 (1622)
T PLN03130 682 AYVPQVSWIFN-ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1622)
T ss_pred EEEcCccccCC-CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 99999998874 7999982 123455667777766654322 222 89999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 156 IISRDEPISGLDARAATTVIR-MVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++||||||+||+++.+++.+ .++... +|+|+|++||+++ ....+|+|++|++ |+++..|+.+
T Consensus 761 IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~-G~i~e~Gt~~ 824 (1622)
T PLN03130 761 VYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHE-GMIKEEGTYE 824 (1622)
T ss_pred EEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeC-CEEEEeCCHH
Confidence 999999999999999998875 555543 5899999999985 4677999999986 9999999864
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-25 Score=206.44 Aligned_cols=203 Identities=24% Similarity=0.275 Sum_probs=151.3
Q ss_pred EEEeEEEEEeC---CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchh---hhcc
Q 042733 29 SLNEIVYSVDM---PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQE---TFAR 93 (531)
Q Consensus 29 ~~~~ls~~~~~---~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~---~~~~ 93 (531)
+++|+++.+.. .++++|+++|+.+..| |||||||+|+|+|..+. .+|.|.++|.+++.. ....
T Consensus 3 ~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~--t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP--TSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred ccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc--CCceEEECceecccCCHHHHhh
Confidence 44555555432 2346888888766655 99999999999997652 578999999887542 2234
Q ss_pred eEEEEecCCC--CCCCCcHHhHH-----------------HHHHHHHHHHHHhc--CCchhhhccH-----HHHHHHHHH
Q 042733 94 ILGYCEQNDI--HSPHDTLYDFT-----------------HCLYMFIEEGMELV--ELNPFRQALF-----EQRKRLTVA 147 (531)
Q Consensus 94 ~igyv~Q~~~--~~~~ltv~e~~-----------------~~~~~~~~~~l~~l--~l~~~~~~~~-----GerqRv~iA 147 (531)
.++-|+|++. ..+.+|+.|+- ..++....+.++.+ |+++..+..+ ||||-++++
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~ 160 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL 160 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence 5667899874 58999999981 11222334445544 4566666655 899999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCC--
Q 042733 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPS-- 224 (531)
Q Consensus 148 ~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~-- 224 (531)
+|-++.|++|+|||-|++|||.++..+++.-.++.++ +.|.+++||.+. +...+-+|.++|++ |+|+.+-.-++.
T Consensus 161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~-G~IvlDv~g~~k~~ 238 (263)
T COG1101 161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHS-GKIVLDVTGEEKAS 238 (263)
T ss_pred HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeC-CeEEEEcccccccC
Confidence 9999999999999999999999999999999988764 789999999987 56788899999996 999976433221
Q ss_pred --chhHHHHHHhh
Q 042733 225 --SIHLISYFEKI 235 (531)
Q Consensus 225 --~~~~~~~f~~~ 235 (531)
..++.+.|+.+
T Consensus 239 L~v~dli~~F~~~ 251 (263)
T COG1101 239 LTVLDLIQMFEKI 251 (263)
T ss_pred CcHHHHHHHHHHH
Confidence 23555666654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-25 Score=265.74 Aligned_cols=180 Identities=19% Similarity=0.268 Sum_probs=141.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.++++|++++|+..++++|+|+|+.+++| |||||||+|+|+|..++ .+|++.++| .++|
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g----------~i~y 703 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKG----------SVAY 703 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc--CCcEEEECC----------EEEE
Confidence 68999999999744467999999998888 99999999999997653 468888876 4899
Q ss_pred EecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCch----------------hhhccHHHHHHHHHHHHHhhCCCeE
Q 042733 98 CEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNP----------------FRQALFEQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~----------------~~~~~~GerqRv~iA~aL~~~p~ll 157 (531)
|+|++.++ +.|++|+.. ...+..+++++..++.+ -.+.+.|||||++||||++.+|+++
T Consensus 704 v~Q~~~l~-~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~il 782 (1522)
T TIGR00957 704 VPQQAWIQ-NDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 782 (1522)
T ss_pred EcCCcccc-CCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998765 579999821 11122333333332211 1122339999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH--HcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTV--DMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~--~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||++||+.+++.+.+.+.+.. .+|+|+|++||+++. ...+|++++|++ |+++..|+.+
T Consensus 783 lLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~-G~i~~~g~~~ 846 (1522)
T TIGR00957 783 LFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSG-GKISEMGSYQ 846 (1522)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecC-CeEEeeCCHH
Confidence 9999999999999999999987542 357999999999863 456999999986 9999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-25 Score=245.64 Aligned_cols=175 Identities=20% Similarity=0.198 Sum_probs=134.5
Q ss_pred eEEEEEeCCCcccccc--------EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEE-----------EcCcccchh--h
Q 042733 32 EIVYSVDMPQIGDLNS--------LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNIT-----------VSGYPEKQE--T 90 (531)
Q Consensus 32 ~ls~~~~~~~~~iL~~--------vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~-----------~~g~~~~~~--~ 90 (531)
+++++|+. +..+|++ +.+.+||||||||||+|+|+|..++ ..|++. ++|.+.... .
T Consensus 78 ~~~~~yg~-~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p--~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGV-NGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIP--NLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecC-CceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccC--CCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 37777752 2234544 5577888899999999999997553 357776 777654321 1
Q ss_pred ---hcceEEEEecCCCCCCC---CcHHhHHH--HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 91 ---FARILGYCEQNDIHSPH---DTLYDFTH--CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 91 ---~~~~igyv~Q~~~~~~~---ltv~e~~~--~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
.+..+++.+|.....|. .||.|+.. .....++++++.+++.+..++.+ ||||||+||++|+.+|+++
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ll 234 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFY 234 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 12335666665444333 38887632 22356788999999987777665 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
+|||||++||+.++..+.+.|+++++ |+|||+++|+++ .+...+|++++|.+
T Consensus 235 lLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~ 286 (590)
T PRK13409 235 FFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYG 286 (590)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 99999999999999999999999988 999999999987 57788999999963
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=196.58 Aligned_cols=190 Identities=23% Similarity=0.289 Sum_probs=138.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcc---c-----chh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYP---E-----KQE 89 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~---~-----~~~ 89 (531)
-++++++|+.|. ...-.+||||.+-|| ||||||||+||+++..+ ..|++.+.-.. . .+.
T Consensus 6 LL~V~~lsk~Yg--~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p--~~G~v~Y~~r~~~~~dl~~msEa 81 (258)
T COG4107 6 LLSVSGLSKLYG--PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP--DAGTVTYRMRDGQPRDLYTMSEA 81 (258)
T ss_pred ceeehhhhhhhC--CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCC--CCCeEEEEcCCCCchhHhhhchH
Confidence 467778887775 344567777777777 99999999999998653 35677665422 1 111
Q ss_pred ----hhcceEEEEecCCCCCCCCcH------HhH--------HHHHHHHHHHHHHhcCCchh--hhcc----HHHHHHHH
Q 042733 90 ----TFARILGYCEQNDIHSPHDTL------YDF--------THCLYMFIEEGMELVELNPF--RQAL----FEQRKRLT 145 (531)
Q Consensus 90 ----~~~~~igyv~Q~~~~~~~ltv------~e~--------~~~~~~~~~~~l~~l~l~~~--~~~~----~GerqRv~ 145 (531)
-.|..-|+|.|++.-=-.++| .|- -...+....+.++.++++.. .|.. .|+|||+.
T Consensus 82 eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQ 161 (258)
T COG4107 82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQ 161 (258)
T ss_pred HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHH
Confidence 134467999998653222332 221 01223445567777776532 2222 29999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||-|++.|+++|+||||.|||..-+.+++++++.+..+ |.+++++|||... +.-++||.++|++ |+++..|-.+
T Consensus 162 iARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLla~rlmvmk~-g~vve~GLTD 237 (258)
T COG4107 162 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLADRLMVMKQ-GQVVESGLTD 237 (258)
T ss_pred HHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHhhhcceeecC-CCEecccccc
Confidence 999999999999999999999999999999999999876 9999999999763 3346899999986 9999998654
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-25 Score=202.76 Aligned_cols=145 Identities=25% Similarity=0.302 Sum_probs=120.9
Q ss_pred EEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEEEEecCCCCCCCCcHHhHHHH--------HHHH
Q 042733 51 AFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILGYCEQNDIHSPHDTLYDFTHC--------LYMF 120 (531)
Q Consensus 51 ~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~igyv~Q~~~~~~~ltv~e~~~~--------~~~~ 120 (531)
.-||||||||||||+|+|+..+ ..|+|.++|.+... +.+++.+-|+-.++.+=+.+|+.|+-.. ....
T Consensus 33 i~G~NG~GKTtLLRilaGLl~p--~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~ 110 (209)
T COG4133 33 ITGPNGAGKTTLLRILAGLLRP--DAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAAT 110 (209)
T ss_pred EECCCCCcHHHHHHHHHcccCC--CCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhh
Confidence 3445599999999999997653 46899999887643 2245566788777888899999998221 1345
Q ss_pred HHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 121 IEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 121 ~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
+.++++.+||....|..+ ||||||+|||-++..+++.|||||+++||......+-.++..-+.+|-.||.+||||
T Consensus 111 i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 111 IWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 788899999988777766 999999999999999999999999999999999999999998888899999999998
Q ss_pred ch
Q 042733 196 SI 197 (531)
Q Consensus 196 ~~ 197 (531)
..
T Consensus 191 l~ 192 (209)
T COG4133 191 LP 192 (209)
T ss_pred cC
Confidence 63
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-25 Score=222.67 Aligned_cols=187 Identities=24% Similarity=0.324 Sum_probs=147.1
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~ 92 (531)
...+.++++++.|. +.+++|+++|+.+.+| |+||||++++|-...+. .+|.|.++|.+.. ....|
T Consensus 260 ~g~v~F~~V~F~y~-~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~--~sG~I~id~qdir~vtq~slR 336 (497)
T COG5265 260 LGAVAFINVSFAYD-PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV--NSGSITIDGQDIRDVTQQSLR 336 (497)
T ss_pred cceEEEEEEEeecc-ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC--cCceEEEcchhHHHhHHHHHH
Confidence 34589999999997 5778999999999888 99999999999997663 4799999998764 35678
Q ss_pred ceEEEEecCCCCCCCCcHHhHH---------HH-----HHHHHHHHHHhcCCchhhhccH---------HHHHHHHHHHH
Q 042733 93 RILGYCEQNDIHSPHDTLYDFT---------HC-----LYMFIEEGMELVELNPFRQALF---------EQRKRLTVAVE 149 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~---------~~-----~~~~~~~~l~~l~l~~~~~~~~---------GerqRv~iA~a 149 (531)
+.||.|||+..++ +.|...+. .+ ....+...++.+ .+-.++.+ ||||||+|||+
T Consensus 337 ~aIg~VPQDtvLF-NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~l--P~gy~t~VgerglklSggekqrvaiar~ 413 (497)
T COG5265 337 RAIGIVPQDTVLF-NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL--PEGYDTGVGERGLKLSGGEKQRVAIART 413 (497)
T ss_pred HHhCcCcccceeh-hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhC--chhhhcccchheeeccCchHHHHHHHHH
Confidence 8999999997775 45555441 11 111112222221 11122222 89999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++++|++|+|||.||.||..+.+++...|++.. .|+|.+++.|.++. + --+|.+++|++ |+++..|+-
T Consensus 414 ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~~-g~i~erg~h 481 (497)
T COG5265 414 ILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDN-GRIVERGTH 481 (497)
T ss_pred HhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeC-CEEEecCcH
Confidence 999999999999999999999999999999986 58999999999873 3 45799999996 999999974
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-24 Score=229.72 Aligned_cols=179 Identities=23% Similarity=0.290 Sum_probs=138.9
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..|+++|++++|+ .+.+|+++|+.+.+| |||||||||+|+|...+ .+|+|...+. -.+|
T Consensus 2 ~~i~~~~ls~~~g--~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~--~~G~i~~~~~--------~~v~ 69 (530)
T COG0488 2 SMITLENLSLAYG--DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG--------LRVG 69 (530)
T ss_pred ceEEEeeeEEeeC--CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC--CCCeEeecCC--------ceEE
Confidence 3578999999994 678899888776665 99999999999997643 3577765431 2589
Q ss_pred EEecCCCCCCCCcHHhHH---------------HH--------------------------HHHHHHHHHHhcCCchh--
Q 042733 97 YCEQNDIHSPHDTLYDFT---------------HC--------------------------LYMFIEEGMELVELNPF-- 133 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~---------------~~--------------------------~~~~~~~~l~~l~l~~~-- 133 (531)
|++|+....+..||.+.. .. ...+++.++..+|+.+.
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~ 149 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDR 149 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccC
Confidence 999999999888998750 00 01345566777777654
Q ss_pred --hhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 134 --RQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 134 --~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
.+.+.|||.||++|++|+.+|++|+|||||++||..+...+-+.|++. .| |+|++|||-. -+-+.|++|+-++.
T Consensus 150 ~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~-FLd~V~t~I~~ld~ 225 (530)
T COG0488 150 PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRY-FLDNVATHILELDR 225 (530)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHH-HHHHHhhheEEecC
Confidence 222339999999999999999999999999999999999999999854 46 9999999954 35568999999987
Q ss_pred Ccee-eecCCC
Q 042733 212 VGQE-ISVGPL 221 (531)
Q Consensus 212 ~G~~-v~~G~~ 221 (531)
|++ .|.|.-
T Consensus 226 -g~l~~y~Gny 235 (530)
T COG0488 226 -GKLTPYKGNY 235 (530)
T ss_pred -CceeEecCCH
Confidence 655 455653
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-24 Score=248.62 Aligned_cols=191 Identities=18% Similarity=0.204 Sum_probs=157.8
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
.-.|+++|++.+|..+...+|+|||+.++|| |||||||+++|-....+ .+|+|.++|.++.. .++|
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~--~~G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP--AEGEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc--cCCeEEEcCeecccccHHHHH
Confidence 3479999999999876678999999999999 99999999999998653 46999999998654 5689
Q ss_pred ceEEEEecCCCCCCCCcHHhHH----HHHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFT----HCLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~----~~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~ 152 (531)
++++.+||||.+|. -|+|.|- +..++.+.++++..+|++... -++||||-+++||||++
T Consensus 1214 srlsIIPQdPvLFs-GTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr 1292 (1381)
T KOG0054|consen 1214 SRLSIIPQDPVLFS-GTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR 1292 (1381)
T ss_pred hcCeeeCCCCceec-CccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc
Confidence 99999999998874 6888871 112234555565555544332 22399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++||+|||.|++.|+.+-..|.+.+|+-- +++|||.+.|..+. + .-+|||++|++ |+++.+|+|.
T Consensus 1293 ~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-V-md~DrVlVld~-G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1293 KSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-V-MDSDRVLVLDA-GRVVEFDSPA 1358 (1381)
T ss_pred cCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-h-hhcCeEEEeeC-CeEeecCChH
Confidence 999999999999999999999999998743 47999999999873 4 45799999996 9999999984
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-24 Score=256.08 Aligned_cols=164 Identities=18% Similarity=0.219 Sum_probs=127.6
Q ss_pred ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHh
Q 042733 42 IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYD 112 (531)
Q Consensus 42 ~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e 112 (531)
+++|+|+|+.+++| ||||||||++|+|..++ .+|+|.++| .++|++|++.+++ .|++|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~--~~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP--SEGKIKHSG----------RISFSPQTSWIMP-GTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence 35889999888877 99999999999998653 468888877 4899999998876 49999
Q ss_pred HHHH----HHHHHHHHHHhcCCchh----------------hhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 042733 113 FTHC----LYMFIEEGMELVELNPF----------------RQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAAT 172 (531)
Q Consensus 113 ~~~~----~~~~~~~~l~~l~l~~~----------------~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~ 172 (531)
+... ...+.+++++..++.+. .+.+.|||||++||||++.+|++++|||||+|||+.+++
T Consensus 506 NI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~ 585 (1490)
T TIGR01271 506 NIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK 585 (1490)
T ss_pred HHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 8210 11122233332222211 122339999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 173 TVIRM-VRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 173 ~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
.+.+. ++++. +|+|+|++||+++. ...||++++|++ |+++..|+.+
T Consensus 586 ~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~-g~i~~~g~~~ 632 (1490)
T TIGR01271 586 EIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHE-GVCYFYGTFS 632 (1490)
T ss_pred HHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEEC-CEEEEEcCHH
Confidence 99984 66654 48999999999863 456999999985 9999999864
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-24 Score=239.54 Aligned_cols=190 Identities=15% Similarity=0.102 Sum_probs=133.8
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCc-eEEEEEEEcCc-----ccch-
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGG-YITRNITVSGY-----PEKQ- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g-~~~G~i~~~g~-----~~~~- 88 (531)
...|+++|++++|+ ++.+|+|+|+.+.+| |||||||||+|+|....| +..|+|.+.+. ....
T Consensus 175 ~~~I~i~nls~~y~--~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 175 IKDIHMENFSISVG--GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred ceeEEEceEEEEeC--CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 45689999999995 456999999888877 999999999999853111 12355543222 1110
Q ss_pred -----------hhhcceEEEEecCCCCCCC----------------CcHHhH-H-----------HHHHHHHHHHHHhcC
Q 042733 89 -----------ETFARILGYCEQNDIHSPH----------------DTLYDF-T-----------HCLYMFIEEGMELVE 129 (531)
Q Consensus 89 -----------~~~~~~igyv~Q~~~~~~~----------------ltv~e~-~-----------~~~~~~~~~~l~~l~ 129 (531)
...++.+++++|++.+... ..+.+. . .....++.++++.+|
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lg 332 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLS 332 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCC
Confidence 0012335667665322110 000000 0 012345667788888
Q ss_pred Cc-hhhhcc-----HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhcc
Q 042733 130 LN-PFRQAL-----FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSF 203 (531)
Q Consensus 130 l~-~~~~~~-----~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~ 203 (531)
+. +..++. .||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++||+.. .+.+.|
T Consensus 333 l~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~-~l~~~~ 408 (718)
T PLN03073 333 FTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHARE-FLNTVV 408 (718)
T ss_pred CChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhC
Confidence 85 333333 39999999999999999999999999999999999999999876 689999999976 466789
Q ss_pred CeEEEEccCceee-ecCCC
Q 042733 204 DELFLLKQVGQEI-SVGPL 221 (531)
Q Consensus 204 d~v~lL~~~G~~v-~~G~~ 221 (531)
|++++|++ |++. |.|+.
T Consensus 409 d~i~~l~~-g~i~~~~g~~ 426 (718)
T PLN03073 409 TDILHLHG-QKLVTYKGDY 426 (718)
T ss_pred CEEEEEEC-CEEEEeCCCH
Confidence 99999996 8986 66764
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-23 Score=183.95 Aligned_cols=167 Identities=20% Similarity=0.191 Sum_probs=136.8
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCC-ceEEEEEEEcCcccch-hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG-GYITRNITVSGYPEKQ-ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~-g~~~G~i~~~g~~~~~-~~~~~~ig 96 (531)
+.++|++...+ ....|-++|+++.+| |||||||+..+.|...+ -..+|++++++...+. ...+|.+|
T Consensus 3 l~l~nvsl~l~--g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 3 LCLKNVSLRLP--GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred eeeeeeeecCC--CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence 46777775543 456777777777666 99999999999996543 3578999999987643 23567899
Q ss_pred EEecCCCCCCCCcHHhH----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 97 YCEQNDIHSPHDTLYDF----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
.++|++.++|+++|.++ ...++..++..++..||....+.-. |||-||++-|+|+..|+.++|||
T Consensus 81 iLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDE 160 (213)
T COG4136 81 ILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDE 160 (213)
T ss_pred eeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCC
Confidence 99999999999999998 2355667888999999988766554 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHH-HHHcCCeEEEEecCCc
Q 042733 162 PISGLDARAATTVIRMVRN-TVDMGRTVVCTIHQPS 196 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~-l~~~g~tvi~~~H~~~ 196 (531)
|+|.||..-+.++.+..-. ....|..+|.+|||..
T Consensus 161 PFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 161 PFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 9999999999999987654 4456999999999964
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-23 Score=250.28 Aligned_cols=165 Identities=21% Similarity=0.179 Sum_probs=124.6
Q ss_pred ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHh
Q 042733 42 IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYD 112 (531)
Q Consensus 42 ~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e 112 (531)
+.+|+|+|+.+.+| ||||||||++|+|..++ .+|++.+ ++.+||++|++.++ ..|++|
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~--~~G~i~~----------~~~i~yv~Q~~~l~-~~Tv~e 739 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI--SEGRVWA----------ERSIAYVPQQAWIM-NATVRG 739 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEE----------CCeEEEEeCCCccC-CCcHHH
Confidence 45888888888777 99999999999997653 3577764 24699999998875 579999
Q ss_pred HHH----HHHHHHHHH---------HHhc--CCchhhh-----ccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 042733 113 FTH----CLYMFIEEG---------MELV--ELNPFRQ-----ALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAAT 172 (531)
Q Consensus 113 ~~~----~~~~~~~~~---------l~~l--~l~~~~~-----~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~ 172 (531)
+.. ...+..++. ++.+ |+....+ .+.|||||++|||||+.+|++++|||||++||+.+++
T Consensus 740 nI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~ 819 (1560)
T PTZ00243 740 NILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGE 819 (1560)
T ss_pred HHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence 821 111122222 3333 3332222 2239999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 173 TVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 173 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
.+++.+.....+|+|+|++||+++. ...+|++++|++ |++++.|+.+
T Consensus 820 ~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~-G~i~~~G~~~ 866 (1560)
T PTZ00243 820 RVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGD-GRVEFSGSSA 866 (1560)
T ss_pred HHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEEC-CEEEEecCHH
Confidence 9887543222358999999999863 467999999996 9999999864
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=198.52 Aligned_cols=95 Identities=21% Similarity=0.267 Sum_probs=82.5
Q ss_pred HHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEec
Q 042733 122 EEGMELVELNP-FRQALF-----EQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193 (531)
Q Consensus 122 ~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H 193 (531)
.+.++.+++.+ ..+..+ |||||++||++|+.+| ++++|||||+|||+.++..+.+.|++++++|.|+|++||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 45788888865 345444 9999999999999998 599999999999999999999999999878999999999
Q ss_pred CCchHHHhccCeEEEE------ccCceeeecC
Q 042733 194 QPSIDIFYSFDELFLL------KQVGQEISVG 219 (531)
Q Consensus 194 ~~~~~i~~~~d~v~lL------~~~G~~v~~G 219 (531)
+++ .+ +.||++++| ++ |+++++|
T Consensus 198 ~~~-~~-~~~d~i~~l~~~~~~~~-G~iv~~g 226 (226)
T cd03270 198 DED-TI-RAADHVIDIGPGAGVHG-GEIVAQG 226 (226)
T ss_pred CHH-HH-HhCCEEEEeCCCccccC-CEEEecC
Confidence 986 34 689999999 64 8998876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-23 Score=200.01 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=113.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCC-------ceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPG-------GYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYM 119 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~-------g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~ 119 (531)
++.+.+||||||||||+++|+|...+ +...|++.+.|........++.++|++|++..+.. .. ...
T Consensus 23 g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~--~~-----~~~ 95 (197)
T cd03278 23 GLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYS--II-----SQG 95 (197)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCcee--EE-----ehh
Confidence 58899999999999999999986421 11224566666553322335679999998876521 10 123
Q ss_pred HHHHHHHhcCC--chhhhccHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEec
Q 042733 120 FIEEGMELVEL--NPFRQALFEQRKRLTVAVEFV----ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193 (531)
Q Consensus 120 ~~~~~l~~l~l--~~~~~~~~GerqRv~iA~aL~----~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H 193 (531)
+++++++..+. ....+.+.|||||++||++++ .+|++++|||||+|||+..+..+.+.|+++++ +.|||++||
T Consensus 96 ~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH 174 (197)
T cd03278 96 DVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVITH 174 (197)
T ss_pred hHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEEC
Confidence 45555555221 112223339999999999997 46799999999999999999999999999865 689999999
Q ss_pred CCchHHHhccCeEEEEccC
Q 042733 194 QPSIDIFYSFDELFLLKQV 212 (531)
Q Consensus 194 ~~~~~i~~~~d~v~lL~~~ 212 (531)
+++ ..+.+|+++.+...
T Consensus 175 ~~~--~~~~~d~v~~~~~~ 191 (197)
T cd03278 175 RKG--TMEAADRLYGVTMQ 191 (197)
T ss_pred CHH--HHhhcceEEEEEec
Confidence 986 34689999998753
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=200.71 Aligned_cols=125 Identities=19% Similarity=0.171 Sum_probs=99.9
Q ss_pred EEEEecCCCCCCCCcHHhHHHH-----HHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhC---CCeEEEe
Q 042733 95 LGYCEQNDIHSPHDTLYDFTHC-----LYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAVEFVAN---PSIISRD 160 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~~-----~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~---p~lllLD 160 (531)
+.|..++......+|+.|+... ......+.++.+||.. ..++.. |||||++||++|+.+ |++++||
T Consensus 118 ~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLD 197 (261)
T cd03271 118 VRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILD 197 (261)
T ss_pred cCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 3455555555577888887321 1234667888999976 344443 999999999999996 7999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc-----cCceeeecCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK-----QVGQEISVGPL 221 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~-----~~G~~v~~G~~ 221 (531)
|||+|||+..+..+.+.|++++++|.|||+++|+++. .+.+|+++.|. ++|++++.|++
T Consensus 198 EPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~--i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 198 EPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDV--IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999999999999999998889999999999863 45799999993 35999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-22 Score=231.94 Aligned_cols=183 Identities=20% Similarity=0.318 Sum_probs=150.0
Q ss_pred ceEEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcce
Q 042733 25 PHYISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARI 94 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ 94 (531)
...++++|.+++.+.. ..+.|+|||+.+++| |||||+||.+|.|..+ ..+|++.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs---------- 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS---------- 583 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe----------
Confidence 4568999999998752 335999999999999 9999999999999765 36788988874
Q ss_pred EEEEecCCCCCCCCcHHhH----HHHHHHHHHHHHHhcCCchhhhccH----------------HHHHHHHHHHHHhhCC
Q 042733 95 LGYCEQNDIHSPHDTLYDF----THCLYMFIEEGMELVELNPFRQALF----------------EQRKRLTVAVEFVANP 154 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~----~~~~~~~~~~~l~~l~l~~~~~~~~----------------GerqRv~iA~aL~~~p 154 (531)
++||+|++.++ +-||+|| ..-.+++.+++++...|++-.+... |||||+++|||+.+++
T Consensus 584 iaYv~Q~pWI~-ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~a 662 (1381)
T KOG0054|consen 584 VAYVPQQPWIQ-NGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDA 662 (1381)
T ss_pred EEEeccccHhh-CCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccC
Confidence 89999999875 5899998 2334456677777766654333322 8999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
++.+||.|.|.+|.+..+.+.+..-.-.-+++|+|++|||.. ....+|.|++|++ |++...|+.++
T Consensus 663 dIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~~ad~Iivl~~-G~I~~~Gty~e 728 (1381)
T KOG0054|consen 663 DIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLPHADQIIVLKD-GKIVESGTYEE 728 (1381)
T ss_pred CEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhhhCCEEEEecC-CeEecccCHHH
Confidence 999999999999999999998855443345899999999864 5778999999996 99999999753
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-22 Score=191.23 Aligned_cols=178 Identities=18% Similarity=0.084 Sum_probs=115.6
Q ss_pred EEEEEeEEEEEeCCCcccc-----ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCc--ccchhhhcceEEEEe
Q 042733 27 YISLNEIVYSVDMPQIGDL-----NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGY--PEKQETFARILGYCE 99 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL-----~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~--~~~~~~~~~~igyv~ 99 (531)
.|+++|+. +|.......+ +++...+||||||||||+++|++...+ ...+....+.. .......+..+++++
T Consensus 5 ~i~l~nf~-~y~~~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~v~~~f 82 (213)
T cd03279 5 KLELKNFG-PFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG-KTPRYGRQENLRSVFAPGEDTAEVSFTF 82 (213)
T ss_pred EEEEECCc-CcCCceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec-CccccccchhHHHHhcCCCccEEEEEEE
Confidence 45666665 4432211112 348999999999999999999963211 11111121100 011122345688888
Q ss_pred cCCCC------CCCCcHHhHHHHHHHHHHHHHHhcCCchhhhcc-----HHHHHHHHHHHHHhh----------CCCeEE
Q 042733 100 QNDIH------SPHDTLYDFTHCLYMFIEEGMELVELNPFRQAL-----FEQRKRLTVAVEFVA----------NPSIIS 158 (531)
Q Consensus 100 Q~~~~------~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~-----~GerqRv~iA~aL~~----------~p~lll 158 (531)
|++.. .+.++..+.... + .++..++.+..+.. .|||||+++|++++. +|++++
T Consensus 83 ~~~~~~~~~~r~~gl~~~~~~~~----~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~ll 156 (213)
T cd03279 83 QLGGKKYRVERSRGLDYDQFTRI----V--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALF 156 (213)
T ss_pred EECCeEEEEEEecCCCHHHHHHh----h--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEE
Confidence 87643 122222221110 0 12333333433333 399999999999985 578999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCc
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVG 213 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G 213 (531)
|||||+|||+.++..+.+.|++++++|.|+|++||+++ .+...+|++++++++|
T Consensus 157 lDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 157 IDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 99999999999999999999999877999999999986 4667789999998643
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-22 Score=196.54 Aligned_cols=161 Identities=18% Similarity=0.199 Sum_probs=107.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC----------------CCc----eEEE--EEEEcCcc----c--chhhhcceEEEE
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK----------------PGG----YITR--NITVSGYP----E--KQETFARILGYC 98 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~----------------~~g----~~~G--~i~~~g~~----~--~~~~~~~~igyv 98 (531)
++++.+||||||||||+++|++.. ..+ ...+ ++.+++.+ . .+...++.++++
T Consensus 24 ~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~ 103 (243)
T cd03272 24 KHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLK 103 (243)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEECC
Confidence 588999999999999999998321 111 0112 34444421 1 112346678999
Q ss_pred ecCCCCCC-CCcHHhHHHHHHHH------------HHHHHHhcCCchhh-----hccHHHHHHHHHHHHHhh----CCCe
Q 042733 99 EQNDIHSP-HDTLYDFTHCLYMF------------IEEGMELVELNPFR-----QALFEQRKRLTVAVEFVA----NPSI 156 (531)
Q Consensus 99 ~Q~~~~~~-~ltv~e~~~~~~~~------------~~~~l~~l~l~~~~-----~~~~GerqRv~iA~aL~~----~p~l 156 (531)
+|+..+++ ..|..|........ ..+..+.+++.+.. ..+.|||||++||++|+. +|++
T Consensus 104 ~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~i 183 (243)
T cd03272 104 KDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPF 183 (243)
T ss_pred CCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCE
Confidence 88876665 34554432111100 00111112222212 223399999999999974 5899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
+++||||+|||+.+++.+++.|+++++ ++++|+++|++ ++.+.||++++|.
T Consensus 184 lllDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 184 YLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 999999999999999999999999865 78889889985 4678999999986
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-22 Score=182.04 Aligned_cols=180 Identities=21% Similarity=0.258 Sum_probs=129.5
Q ss_pred EEEEeEEEEEeCCC-----ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcc--c-----
Q 042733 28 ISLNEIVYSVDMPQ-----IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYP--E----- 86 (531)
Q Consensus 28 l~~~~ls~~~~~~~-----~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~--~----- 86 (531)
+.++|+++++.... -++++++|+.+..| |||||||||+|-|.... .+|+|.+.-.. .
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~--d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP--DEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCC--CCceEEEEeCcchhhhhcc
Confidence 45555555543211 15667777776655 99999999999995321 34666654221 1
Q ss_pred ch----hhhcceEEEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhcc------HHHHHHHH
Q 042733 87 KQ----ETFARILGYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQAL------FEQRKRLT 145 (531)
Q Consensus 87 ~~----~~~~~~igyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~------~GerqRv~ 145 (531)
.. .-.++.+|||.|--...|.....+. .+..+.+...++..+++.+..=.. .||||||.
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN 162 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN 162 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh
Confidence 11 1235679999997666666554443 234456677888888886533222 29999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHh-ccCeEEEEcc
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFY-SFDELFLLKQ 211 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~-~~d~v~lL~~ 211 (531)
|||.++.+-+||+|||||+.||...+..+++++++-+.+|..+|=+-||- ++.+ .+||++-+..
T Consensus 163 IaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDe--evre~vadR~~~~~~ 227 (235)
T COG4778 163 IARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE--EVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccH--HHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999888899999999984 3443 6899887753
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=205.04 Aligned_cols=189 Identities=16% Similarity=0.292 Sum_probs=152.2
Q ss_pred cceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hh
Q 042733 24 EPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ET 90 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~ 90 (531)
.++.+++++++.. ..++|+||.+.+| |||+|-|+++|.|..+. ..|+|.++|.+... ..
T Consensus 260 ~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~--~~G~i~l~G~~v~~~sp~~A 331 (500)
T COG1129 260 GEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA--SSGEILLDGKPVRIRSPRDA 331 (500)
T ss_pred CCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC--CCceEEECCEEccCCCHHHH
Confidence 3566888888732 2468999999999 99999999999996542 47999999987532 34
Q ss_pred hcceEEEEecC---CCCCCCCcHHhHH----------------HHHHHHHHHHHHhcCCchh------hhccHHHHHHHH
Q 042733 91 FARILGYCEQN---DIHSPHDTLYDFT----------------HCLYMFIEEGMELVELNPF------RQALFEQRKRLT 145 (531)
Q Consensus 91 ~~~~igyv~Q~---~~~~~~ltv~e~~----------------~~~~~~~~~~l~~l~l~~~------~~~~~GerqRv~ 145 (531)
.+..++|||+| +.++..+++.+|. ...+..+++..+.+++... ...+.|.||||.
T Consensus 332 i~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVv 411 (500)
T COG1129 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVV 411 (500)
T ss_pred HHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHH
Confidence 56789999987 4577888888871 1123345666777776432 222339999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||.|..+|++|||||||.|.|.-++.+|.+++++++++|++||++|.+.. |+..+||||++|++ |+++..=+.+
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e~~~~ 486 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGELDRE 486 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEEeccc
Confidence 999999999999999999999999999999999999999999999999986 78999999999996 9998754443
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-22 Score=178.32 Aligned_cols=125 Identities=26% Similarity=0.386 Sum_probs=103.7
Q ss_pred EEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEEEEecCCCCCC
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGYCEQNDIHSP 106 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~igyv~Q~~~~~~ 106 (531)
++|+++.+.. .++.+.+|+||||||||+++|+|..++ .+|.|.++|.+... ...++.++|++|++.+++
T Consensus 1 L~~v~~~i~~------g~~~~i~G~nGsGKStLl~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 72 (137)
T PF00005_consen 1 LKNVSLEIKP------GEIVAIVGPNGSGKSTLLKALAGLLPP--DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFP 72 (137)
T ss_dssp EEEEEEEEET------TSEEEEEESTTSSHHHHHHHHTTSSHE--SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHT
T ss_pred CCceEEEEcC------CCEEEEEccCCCccccceeeecccccc--ccccccccccccccccccccccccccccccccccc
Confidence 4688888763 357889999999999999999998653 57999999987654 446778999999999999
Q ss_pred CCcHHhHHHHHHHHHHHHHHhcCCchhhhccH---------HHHHHHHHHHHHhhCCCeEEEeCCCC
Q 042733 107 HDTLYDFTHCLYMFIEEGMELVELNPFRQALF---------EQRKRLTVAVEFVANPSIISRDEPIS 164 (531)
Q Consensus 107 ~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~---------GerqRv~iA~aL~~~p~lllLDEPts 164 (531)
.+|++++ .....++++++.+++.+..++.+ |||||++||++|+.+|++++|||||+
T Consensus 73 ~~tv~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 73 GLTVREN--ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp TSBHHHH--HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccc--cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9999987 33455788888888766544443 99999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.9e-22 Score=196.52 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=118.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCc-cc-c----hhhhcceEEEEecCC---------CCCCCCcH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGY-PE-K----QETFARILGYCEQND---------IHSPHDTL 110 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~-~~-~----~~~~~~~igyv~Q~~---------~~~~~ltv 110 (531)
.++++.+||||||||||+++|++...+. ..|.+...+. +. . ....+..+++++|++ ...|.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~-~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT-NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc-ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 5899999999999999999999964321 1234555443 11 0 011234789999984 23445666
Q ss_pred HhH-------------HHHHHHHHHHHHHhcCCc--------------------hhhhc-----cHHHHHHHHHHHHHh-
Q 042733 111 YDF-------------THCLYMFIEEGMELVELN--------------------PFRQA-----LFEQRKRLTVAVEFV- 151 (531)
Q Consensus 111 ~e~-------------~~~~~~~~~~~l~~l~l~--------------------~~~~~-----~~GerqRv~iA~aL~- 151 (531)
.++ .......+.+.++.+++. +..+. ..|||||++||++|+
T Consensus 104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 542 111235677888888875 22222 239999999999998
Q ss_pred ---hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 152 ---ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 152 ---~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
.+|+++++||||+|||+..+..+.+.|++++ +|.|+|++||++ ++.+.+|+++-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 5789999999999999999999999999985 488999999994 5778899998775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.9e-23 Score=185.49 Aligned_cols=171 Identities=20% Similarity=0.322 Sum_probs=142.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEEEEecCCCCCCCCcHHhH------HHHHH
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGYCEQNDIHSPHDTLYDF------THCLY 118 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~igyv~Q~~~~~~~ltv~e~------~~~~~ 118 (531)
+--.+|||||||||||-.++|..+. +|+|.+.|.+... .+..|.-+|..|+......+.|..+ ..+..
T Consensus 27 ~~HliGPNGaGKSTLLA~lAGm~~~---sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a 103 (248)
T COG4138 27 ILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRT 103 (248)
T ss_pred EEEEECCCCccHHHHHHHHhCCCCC---CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHH
Confidence 4456899999999999999999874 6999999998643 3455566899988766666667665 34555
Q ss_pred HHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh-----C--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 042733 119 MFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA-----N--PSIISRDEPISGLDARAATTVIRMVRNTVDMGR 186 (531)
Q Consensus 119 ~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~-----~--p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~ 186 (531)
..++++.+.+++++...+.+ ||-|||-+|...++ | .++|+||||.++||...+..+-.+|.+++.+|.
T Consensus 104 ~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~ 183 (248)
T COG4138 104 ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGL 183 (248)
T ss_pred HHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCc
Confidence 66788888999988777666 89999999987764 3 369999999999999999999999999999999
Q ss_pred eEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 187 TVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 187 tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+||++.||.+. ..+.+|++.+|++ |++...|..++
T Consensus 184 ~vims~HDLNh-TLrhA~~~wLL~r-G~l~~~G~~~e 218 (248)
T COG4138 184 AIVMSSHDLNH-TLRHAHRAWLLKR-GKLLASGRREE 218 (248)
T ss_pred EEEEeccchhh-HHHHHHHHHHHhc-CeEEeecchhh
Confidence 99999999985 5677899999997 99999998754
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=188.97 Aligned_cols=161 Identities=16% Similarity=0.212 Sum_probs=111.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHh----CCCCCceEEEEEEEcCcccchhhhcceEEEEecCCC-----CCCCCcHHhHHH-
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLA----GRKPGGYITRNITVSGYPEKQETFARILGYCEQNDI-----HSPHDTLYDFTH- 115 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~----G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~-----~~~~ltv~e~~~- 115 (531)
.++.+.+||||||||||+++|. |....+ .|.+..+.........+..+++++|++. ....+|+.++..
T Consensus 22 ~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~--~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~ 99 (204)
T cd03240 22 SPLTLIVGQNGAGKTTIIEALKYALTGELPPN--SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIF 99 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCCCCcc--cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceee
Confidence 3589999999999999999995 765432 2322211111112233457899999872 223335555411
Q ss_pred HHHHHHHHHHHhcCCchhhhccHHHHHH------HHHHHHHhhCCCeEEEeCCCCCCCHHHHH-HHHHHHHHHHHc-CCe
Q 042733 116 CLYMFIEEGMELVELNPFRQALFEQRKR------LTVAVEFVANPSIISRDEPISGLDARAAT-TVIRMVRNTVDM-GRT 187 (531)
Q Consensus 116 ~~~~~~~~~l~~l~l~~~~~~~~GerqR------v~iA~aL~~~p~lllLDEPtsgLD~~~~~-~i~~~L~~l~~~-g~t 187 (531)
.....+++.+ -.+..+.+.||||| +++|++++.+|+++++||||++||+..+. .+.+.|++++++ |.|
T Consensus 100 ~~~~~~~~~~----~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~ 175 (204)
T cd03240 100 CHQGESNWPL----LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQ 175 (204)
T ss_pred echHHHHHHH----hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCE
Confidence 0111122222 11223344499996 78999999999999999999999999999 999999999876 889
Q ss_pred EEEEecCCchHHHhccCeEEEEccCce
Q 042733 188 VVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 188 vi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
||++||++. ....+|+++.|.++|+
T Consensus 176 iiiitH~~~--~~~~~d~i~~l~~~~~ 200 (204)
T cd03240 176 LIVITHDEE--LVDAADHIYRVEKDGR 200 (204)
T ss_pred EEEEEecHH--HHhhCCEEEEEeeCCC
Confidence 999999975 4567999999977664
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-22 Score=195.70 Aligned_cols=166 Identities=16% Similarity=0.156 Sum_probs=116.8
Q ss_pred EEEEEeEEEEEeCCCccccc----cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCC
Q 042733 27 YISLNEIVYSVDMPQIGDLN----SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQND 102 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~----~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~ 102 (531)
.|+++|.. +|. +..+++ ++.+.+||||||||||+++|.- +.|.+.. ...++.+++++|+.
T Consensus 5 ~l~l~nfk-~~~--~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~~------------~~G~~~~-~~~~~~i~~~~~~~ 68 (212)
T cd03274 5 KLVLENFK-SYA--GEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLF------------VFGFRAS-KMRQKKLSDLIHNS 68 (212)
T ss_pred EEEEECcc-cCC--CCeeeccCCCCeEEEECCCCCCHHHHHHHHHH------------HhccCHH-HhhhhhHHHHhcCC
Confidence 45666664 443 334544 5789999999999999999972 1222111 11123467777776
Q ss_pred CCCCCCcHHhH----HH-----H--------HHHH----HHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh----
Q 042733 103 IHSPHDTLYDF----TH-----C--------LYMF----IEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA---- 152 (531)
Q Consensus 103 ~~~~~ltv~e~----~~-----~--------~~~~----~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~---- 152 (531)
..++.+|+.+. .. . .... .+++++.+++.+..++.+ |||||++||++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~ 148 (212)
T cd03274 69 AGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYK 148 (212)
T ss_pred CCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccC
Confidence 66666666554 00 0 0000 134445666665555544 99999999999974
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
+|++++|||||+|||+.++..+.+.+++++ ++.|+|++||++ ++.+.||++++|..
T Consensus 149 ~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 579999999999999999999999999985 467888888985 57789999999975
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=204.42 Aligned_cols=181 Identities=19% Similarity=0.190 Sum_probs=139.7
Q ss_pred cceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcce
Q 042733 24 EPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARI 94 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ 94 (531)
....++++|+++.|+.+ +.+++++|+.+.+| |+|||||||+|+|...+ .+|.|.+... -.
T Consensus 318 g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~--~~G~v~~g~~--------v~ 386 (530)
T COG0488 318 GKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSGTVKVGET--------VK 386 (530)
T ss_pred CCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc--CCceEEeCCc--------eE
Confidence 35679999999999633 67999999877555 99999999999996543 2677765321 35
Q ss_pred EEEEecCCC-CCCCCcHHhHHHHH-----HHHHHHHHHhcCCchhh-hc-----cHHHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 95 LGYCEQNDI-HSPHDTLYDFTHCL-----YMFIEEGMELVELNPFR-QA-----LFEQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 95 igyv~Q~~~-~~~~ltv~e~~~~~-----~~~~~~~l~~l~l~~~~-~~-----~~GerqRv~iA~aL~~~p~lllLDEP 162 (531)
+||..|+.. +.+..|+.+..... ...+...+..+++..-. .+ +.|||.|+.+|+.++.+|.+|+||||
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEP 466 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP 466 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCC
Confidence 899999863 34777888873221 45677888888886432 22 33999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 163 ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
|++||..+...+.+.|.+. .-|||++|||.. -+-..+++++.+.+ +-..+.|.
T Consensus 467 TNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 467 TNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred CccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEcCCC
Confidence 9999999999999998875 458999999976 36678999999974 33334454
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-20 Score=196.58 Aligned_cols=172 Identities=24% Similarity=0.303 Sum_probs=135.6
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
...++++|++..-+.+ ...+++.++.++|| |||||||+|+|+|..+-| +|+|... -...+
T Consensus 390 ~~~i~~~nl~l~~p~~-~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g--~G~I~~P--------~~~~~ 458 (604)
T COG4178 390 DHGITLENLSLRTPDG-QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG--SGRISMP--------ADSAL 458 (604)
T ss_pred cceeEEeeeeEECCCC-CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC--CCceecC--------CCCce
Confidence 4689999999888743 47999999999999 999999999999998754 3555442 11246
Q ss_pred EEEecCCCCCCCCcHHhH-------HHHHHHHHHHHHHhcCCchhhhccH-----------HHHHHHHHHHHHhhCCCeE
Q 042733 96 GYCEQNDIHSPHDTLYDF-------THCLYMFIEEGMELVELNPFRQALF-----------EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~-------~~~~~~~~~~~l~~l~l~~~~~~~~-----------GerqRv~iA~aL~~~p~ll 157 (531)
-|+||.+.+.. -|.+|. .....+.+.++|.++||.+..++.- |||||+++||.|+++|+++
T Consensus 459 lflpQ~PY~p~-GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v 537 (604)
T COG4178 459 LFLPQRPYLPQ-GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWV 537 (604)
T ss_pred EEecCCCCCCC-ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEE
Confidence 79999887644 488886 1123455778889999988766542 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
+|||.|++||+.++..+.+.+++-. .+.|||-+.|++.. ....++.+-+.+
T Consensus 538 ~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~tl--~~~h~~~l~l~~ 588 (604)
T COG4178 538 FLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTL--WNFHSRQLELLD 588 (604)
T ss_pred EEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchhh--HHHHhhheeecc
Confidence 9999999999999999999998732 37999999999764 445556555543
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=180.31 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCc
Q 042733 139 EQRKRLTVAVEFVAN----PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVG 213 (531)
Q Consensus 139 GerqRv~iA~aL~~~----p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G 213 (531)
|||||++||++++.+ |++++|||||+|||+..+..+.+.|++++++|.+||++||++ ++.+.+|+++++.+++
T Consensus 159 G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~~~ 235 (247)
T cd03275 159 GEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYRDQ 235 (247)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEecC
Confidence 999999999999875 899999999999999999999999999987799999999995 4678899999998644
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-19 Score=171.25 Aligned_cols=154 Identities=12% Similarity=0.028 Sum_probs=104.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCc---eEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGG---YITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEE 123 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g---~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~ 123 (531)
++++.+||||||||||+.+|.....+. ...|. .+... .........+.+.+|+....++ +........+++
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~-~~~~~-i~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~ 95 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGS-SLKDL-IKDGESSAKITVTLKNQGLDAN----PLCVLSQDMARS 95 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCcccccccc-cHHHH-hhCCCCeEEEEEEEEcCCccCC----cCCHHHHHHHHH
Confidence 688999999999999999997422110 00111 00000 0001113457788887655441 111112344566
Q ss_pred HHHhcCCchhhhcc-----HHHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc---CCeEEEE
Q 042733 124 GMELVELNPFRQAL-----FEQRKRLTVAVEF----VANPSIISRDEPISGLDARAATTVIRMVRNTVDM---GRTVVCT 191 (531)
Q Consensus 124 ~l~~l~l~~~~~~~-----~GerqRv~iA~aL----~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~---g~tvi~~ 191 (531)
.++. .+..++. .|||||++||+++ +.+|++++|||||+|||+..+..+.+.|++++++ +.|||++
T Consensus 96 ~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~ 172 (198)
T cd03276 96 FLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFIT 172 (198)
T ss_pred Hhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 6665 3333333 3999999999999 5899999999999999999999999999998653 3589999
Q ss_pred ecCCchHHHhccCeEEEEcc
Q 042733 192 IHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 192 ~H~~~~~i~~~~d~v~lL~~ 211 (531)
+|+++ ++. .+|+|.++..
T Consensus 173 th~~~-~i~-~~d~v~~~~~ 190 (198)
T cd03276 173 PQDIS-GLA-SSDDVKVFRM 190 (198)
T ss_pred CCccc-ccc-cccceeEEEe
Confidence 99987 344 4599999975
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-19 Score=182.67 Aligned_cols=188 Identities=17% Similarity=0.196 Sum_probs=141.0
Q ss_pred eEEEEEeEEEEEeCCCccccccEE---------EEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLS---------GAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs---------~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++|+.|.|.... --++.|| +.+|.||||||||++.|+|+..+ .+|+|.+||.|++. +++|+
T Consensus 321 ~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P--qsG~I~ldg~pV~~e~ledYR~ 397 (546)
T COG4615 321 KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKPVSAEQLEDYRK 397 (546)
T ss_pred cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC--CCCceeECCccCCCCCHHHHHH
Confidence 4799999999997432 3344444 55555599999999999997653 47999999998753 45777
Q ss_pred eEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchh---hhcc-------HHHHHHHHHHHHHhhCCCeEEEeCCC
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPF---RQAL-------FEQRKRLTVAVEFVANPSIISRDEPI 163 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~---~~~~-------~GerqRv~iA~aL~~~p~lllLDEPt 163 (531)
.++-|+-|..+++.+--.|.. ...+.++..++.+++.+. .|.. -|||||+++-.|++-+.+|+++||=-
T Consensus 398 LfSavFsDyhLF~~ll~~e~~-as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWA 476 (546)
T COG4615 398 LFSAVFSDYHLFDQLLGPEGK-ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWA 476 (546)
T ss_pred HHHHHhhhHhhhHhhhCCccC-CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhh
Confidence 777777766666543333321 123446666666666542 2222 29999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH-HHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 164 SGLDARAATTVIRMVR-NTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~-~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
+--||.-++.+.+.+- .++++|+||+.+|||-. -+..+||++.+.+ |+++..-+
T Consensus 477 ADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~-G~~~e~tg 531 (546)
T COG4615 477 ADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRN-GQLSELTG 531 (546)
T ss_pred ccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhc-Cceeeccc
Confidence 9999999999998765 45667999999999943 5778899999986 99987543
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.7e-18 Score=175.46 Aligned_cols=194 Identities=16% Similarity=0.246 Sum_probs=161.3
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCccc----chh-h
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPE----KQE-T 90 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~----~~~-~ 90 (531)
...++++||+..-.. ....+++||+.+..| |-|-+.|+.+|+|..+. .+|+|.++|.+. ... .
T Consensus 255 ~~vL~V~~L~v~~~~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~ 331 (501)
T COG3845 255 EVVLEVEDLSVKDRR-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRER 331 (501)
T ss_pred CeEEEEeeeEeecCC-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHH
Confidence 567999999976542 246899999999999 99999999999997643 248999999875 222 2
Q ss_pred hcceEEEEecCC---CCCCCCcHHhH------------------HHHHHHHHHHHHHhcCCchh------hhccHHHHHH
Q 042733 91 FARILGYCEQND---IHSPHDTLYDF------------------THCLYMFIEEGMELVELNPF------RQALFEQRKR 143 (531)
Q Consensus 91 ~~~~igyv~Q~~---~~~~~ltv~e~------------------~~~~~~~~~~~l~~l~l~~~------~~~~~GerqR 143 (531)
.+..++|||+|. .+.+.+|+.|| .........++++.++.... +..+.|.+||
T Consensus 332 r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK 411 (501)
T COG3845 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQK 411 (501)
T ss_pred HhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceeh
Confidence 345799999985 45688899988 13345567788888887632 2223399999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
+-+||+|..+|++|+..+||.|||..+.+.+.+.|.+.+++|+.|++++-+++ |+++++||+.+|.+ |+++...++++
T Consensus 412 ~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~~ 489 (501)
T COG3845 412 LILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPEE 489 (501)
T ss_pred hhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceeccccccc
Confidence 99999999999999999999999999999999999999999999999999998 79999999999996 99998888764
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.2e-18 Score=199.65 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=86.1
Q ss_pred HHHHhcCCchh-hhccH-----HHHHHHHHHHHHh---hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEec
Q 042733 123 EGMELVELNPF-RQALF-----EQRKRLTVAVEFV---ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193 (531)
Q Consensus 123 ~~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~---~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H 193 (531)
+.++.+|+.+. .++.+ |||||++||++|+ .+|++++|||||+|||+.++.++++.|++++++|.|||+++|
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 47788898765 45544 9999999999998 699999999999999999999999999999888999999999
Q ss_pred CCchHHHhccCeEEEEc-----cCceeeecCCCC
Q 042733 194 QPSIDIFYSFDELFLLK-----QVGQEISVGPLG 222 (531)
Q Consensus 194 ~~~~~i~~~~d~v~lL~-----~~G~~v~~G~~~ 222 (531)
+++ .+ ..+|+++.|. .+|+++..|+++
T Consensus 871 dl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 871 NMH-VV-KVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred CHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 987 34 7899999995 248999999875
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-19 Score=182.76 Aligned_cols=182 Identities=18% Similarity=0.175 Sum_probs=129.3
Q ss_pred cceEEEEEeEEEEEeCCCccccccEEE---------EEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcce
Q 042733 24 EPHYISLNEIVYSVDMPQIGDLNSLSG---------AFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARI 94 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~~~~iL~~vs~---------~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ 94 (531)
.+..+.++|++|.|+.+. .+++++++ .+||||+|||||||++.|...+ ..|.+.-.-. .+
T Consensus 386 p~pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H--------~~ 454 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSH--------NK 454 (614)
T ss_pred CCCeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--cccccccccc--------cc
Confidence 356899999999997432 56777665 4889999999999999997543 2454432211 11
Q ss_pred EEEEecC--CCCCCCCcHHhH-----H-HHHHHHHHHHHHhcCCchhhhc------cHHHHHHHHHHHHHhhCCCeEEEe
Q 042733 95 LGYCEQN--DIHSPHDTLYDF-----T-HCLYMFIEEGMELVELNPFRQA------LFEQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 95 igyv~Q~--~~~~~~ltv~e~-----~-~~~~~~~~~~l~~l~l~~~~~~------~~GerqRv~iA~aL~~~p~lllLD 160 (531)
+++..|+ +.+.-..++.|+ . ....+.+..++..+||+...+. +.|||+||.+|+.++..|.+|+||
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLD 534 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLD 534 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEec
Confidence 2233332 112223344443 1 1334557778999999844333 239999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
|||+|||..+...+.+.|.+. .-+||++|||... |.+.++++.+..+++...+.|.
T Consensus 535 EPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 535 EPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred CCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCcc
Confidence 999999999999988888764 4579999999763 6677888888876555666665
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-18 Score=160.91 Aligned_cols=174 Identities=14% Similarity=0.214 Sum_probs=129.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCc-eEE-EEEEEcCccc---chhh----hcceEEEEecCCC--CCCCCcHHhH--
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGG-YIT-RNITVSGYPE---KQET----FARILGYCEQNDI--HSPHDTLYDF-- 113 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g-~~~-G~i~~~g~~~---~~~~----~~~~igyv~Q~~~--~~~~ltv~e~-- 113 (531)
.+.|.+|.+|||||-..|+|+|..+.. .+. ....+++.+. .... ..+.+++++|++. +-|..++...
T Consensus 34 Ei~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlI 113 (330)
T COG4170 34 EIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLI 113 (330)
T ss_pred eeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHH
Confidence 466777777999999999999965432 111 1223333321 1222 2345778999874 3444444321
Q ss_pred ---------------HHHHHHHHHHHHHhcCCchhhhccH--------HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 042733 114 ---------------THCLYMFIEEGMELVELNPFRQALF--------EQRKRLTVAVEFVANPSIISRDEPISGLDARA 170 (531)
Q Consensus 114 ---------------~~~~~~~~~~~l~~l~l~~~~~~~~--------GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~ 170 (531)
-.-++.+.-+++..+|+.+..|-.- ||-|+|.||.|++..|++|+.||||+.+||.+
T Consensus 114 q~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~T 193 (330)
T COG4170 114 QNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTT 193 (330)
T ss_pred hhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccH
Confidence 1123456677888999987666543 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 171 ATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 171 ~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+.++.++|.++.+ +|.||++++||.. .+.+.||++-+|.- |+-+..++.+
T Consensus 194 q~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYC-GQ~~ESa~~e 244 (330)
T COG4170 194 QAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYC-GQTVESAPSE 244 (330)
T ss_pred HHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEe-cccccccchh
Confidence 9999999999986 5899999999987 58889999999986 8888877753
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=189.46 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=85.6
Q ss_pred HHHHHHhcCCch-hhhcc-----HHHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEE
Q 042733 121 IEEGMELVELNP-FRQAL-----FEQRKRLTVAVEFVANP---SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCT 191 (531)
Q Consensus 121 ~~~~l~~l~l~~-~~~~~-----~GerqRv~iA~aL~~~p---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~ 191 (531)
..+.++.+||.. ..++. .|||||+.||++|+.+| ++++|||||+|||+..+..+++.|+++.++|.|||++
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii 889 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI 889 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 356678888875 23433 39999999999999999 9999999999999999999999999998889999999
Q ss_pred ecCCchHHHhccCeEEEEc-----cCceeeecCCCC
Q 042733 192 IHQPSIDIFYSFDELFLLK-----QVGQEISVGPLG 222 (531)
Q Consensus 192 ~H~~~~~i~~~~d~v~lL~-----~~G~~v~~G~~~ 222 (531)
+|+++. ...+|+++.|. ++|++++.|+++
T Consensus 890 tH~~~~--i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 890 EHNLDV--IKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred ecCHHH--HHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 999863 46799999993 359999999863
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-17 Score=155.78 Aligned_cols=191 Identities=17% Similarity=0.217 Sum_probs=133.7
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------- 88 (531)
...|+++++.|.|+..+ +++-|+|+.+..| |||||||||+|+|..--+ .|.|.++|.+.-.
T Consensus 11 ~~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~--~~~v~VlgrsaFhDt~l~~S 87 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG--GGVVQVLGRSAFHDTSLESS 87 (291)
T ss_pred cceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc--CCeEEEcCcCcccccccccc
Confidence 34679999999998543 7887887665554 999999999999964321 2677787765311
Q ss_pred -------hhhcceEEEEecCCCCCCCCcHHhHH----HHHHHHHHHHHHhcCCchh-h-hc-cHHHHHHHHHHHHHhhCC
Q 042733 89 -------ETFARILGYCEQNDIHSPHDTLYDFT----HCLYMFIEEGMELVELNPF-R-QA-LFEQRKRLTVAVEFVANP 154 (531)
Q Consensus 89 -------~~~~~~igyv~Q~~~~~~~ltv~e~~----~~~~~~~~~~l~~l~l~~~-~-~~-~~GerqRv~iA~aL~~~p 154 (531)
.+|.+..+..- +-.+....++.+.. ....++-+.+++.++++-. + ++ +-||||||.|++.|++.=
T Consensus 88 gdl~YLGgeW~~~~~~ag-evplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~Pf 166 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPF 166 (291)
T ss_pred CceeEecccccccccccc-cccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccce
Confidence 11222222222 11222344555431 1112445666676666421 1 11 129999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|+|||-|--||..++..+++.+++-++ +|.||+..||--+ -+.....+++.++. |+++-.-+.
T Consensus 167 kVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl~yi~~-Gkl~~~l~~ 232 (291)
T KOG2355|consen 167 KVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD-GLETWPTHLVYIKS-GKLVDNLKY 232 (291)
T ss_pred eEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhEEEecC-Ceeeecccc
Confidence 99999999999999999999999999886 4999999999765 35667789999985 998864443
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-17 Score=166.52 Aligned_cols=179 Identities=19% Similarity=0.218 Sum_probs=133.7
Q ss_pred ceEEEEEeEEEEEeC------CCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 25 PHYISLNEIVYSVDM------PQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~------~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
...++|.+++++|+. +...--..|.+.+||||-||||+.|+|+|...+ .+|+ ...-.++|=
T Consensus 340 ~~lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~-----------~~~~~vSyK 406 (591)
T COG1245 340 DTLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS-----------EEDLKVSYK 406 (591)
T ss_pred ceeeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC-----------CccceEeec
Confidence 345677888877752 111234678899999999999999999996543 2232 112247788
Q ss_pred ecCCCCCCCCcHHhHHHHH-------HHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 042733 99 EQNDIHSPHDTLYDFTHCL-------YMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGL 166 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~~~-------~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgL 166 (531)
||--..-...||++..... .....++++-+.|++..++.+ ||.|||+||.+|..++++.+||||++.|
T Consensus 407 PQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L 486 (591)
T COG1245 407 PQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL 486 (591)
T ss_pred ceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence 8865444677898862211 123456777788877776665 9999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecC
Q 042733 167 DARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 167 D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
|...+..+-+.+++... +++|.+++.||.-. +-...||+++.. |+--.+|
T Consensus 487 DvEqR~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~--GePg~~g 537 (591)
T COG1245 487 DVEQRIIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE--GEPGKHG 537 (591)
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe--cCCCccC
Confidence 99999999999999986 48999999999753 344679998884 5554444
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=151.05 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 137 LFEQRKRLTVAVEFV----ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 137 ~~GerqRv~iA~aL~----~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
..|||||+++|++++ .+|+++++|||++|||+..+..+.+.|++++++|.|+|+++|+++ ....+|+++.+..
T Consensus 96 S~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 96 SGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 349999999999996 699999999999999999999999999999877899999999975 4568999999875
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-17 Score=171.56 Aligned_cols=190 Identities=16% Similarity=0.197 Sum_probs=118.0
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchh---hhc-
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQE---TFA- 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~---~~~- 92 (531)
..+.++++++++. ...+++|+++.+.+| ||||||+|++|.|+..+.+..-++..-....... ...
T Consensus 74 ~dvk~~sls~s~~--g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~ 151 (614)
T KOG0927|consen 74 RDVKIESLSLSFH--GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQA 151 (614)
T ss_pred ccceeeeeeeccC--CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHH
Confidence 4678999999885 467888888666555 9999999999999744322111222211111100 000
Q ss_pred ---------ceEEEEec------CC-CCCCCCcHHhH-----HHHHHHHHHHHHHhcCC-chhhhcc-----HHHHHHHH
Q 042733 93 ---------RILGYCEQ------ND-IHSPHDTLYDF-----THCLYMFIEEGMELVEL-NPFRQAL-----FEQRKRLT 145 (531)
Q Consensus 93 ---------~~igyv~Q------~~-~~~~~ltv~e~-----~~~~~~~~~~~l~~l~l-~~~~~~~-----~GerqRv~ 145 (531)
+++.|..+ ++ ..-...+..+. .+....++..++..+|. .+..++. .|+|.|++
T Consensus 152 v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~a 231 (614)
T KOG0927|consen 152 VVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAA 231 (614)
T ss_pred HhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHH
Confidence 11111100 00 00000011111 01112233444544443 2333333 39999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-eEEEEecCCchHHHhccCeEEEEccCce-eeecCCCC
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGR-TVVCTIHQPSIDIFYSFDELFLLKQVGQ-EISVGPLG 222 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~-tvi~~~H~~~~~i~~~~d~v~lL~~~G~-~v~~G~~~ 222 (531)
+||+|..+|++|+|||||+|||+.+...+-+.|.+. .+ ++++++|.-+ -+-..|.+|+-+.. ++ +.|.|+.+
T Consensus 232 LAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~---d~~~lVi~sh~QD-fln~vCT~Ii~l~~-kkl~~y~Gnyd 305 (614)
T KOG0927|consen 232 LARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY---DRIILVIVSHSQD-FLNGVCTNIIHLDN-KKLIYYEGNYD 305 (614)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc---cCceEEEEecchh-hhhhHhhhhheecc-cceeeecCCHH
Confidence 999999999999999999999999999999888765 33 8999999755 36678999999986 67 55667653
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-16 Score=180.04 Aligned_cols=100 Identities=22% Similarity=0.258 Sum_probs=84.7
Q ss_pred HHHHHHhcCCchh-hhccH-----HHHHHHHHHHHHhh---CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEE
Q 042733 121 IEEGMELVELNPF-RQALF-----EQRKRLTVAVEFVA---NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCT 191 (531)
Q Consensus 121 ~~~~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~---~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~ 191 (531)
..+.++.+||... .++.. |||||+.||++|+. +|++++|||||+|||+..+..+++.|+++.++|.|||++
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi 887 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI 887 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4456778888652 33333 99999999999997 599999999999999999999999999998889999999
Q ss_pred ecCCchHHHhccCeEEEEc-----cCceeeecCCCC
Q 042733 192 IHQPSIDIFYSFDELFLLK-----QVGQEISVGPLG 222 (531)
Q Consensus 192 ~H~~~~~i~~~~d~v~lL~-----~~G~~v~~G~~~ 222 (531)
+|+++. + ..+|+++.|. ++|++++.|+++
T Consensus 888 ~H~~~~-i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 888 EHNLDV-I-KTADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred eCCHHH-H-HhCCEEEEecCCccCCCCEEEEeCCHH
Confidence 999863 4 6799999993 359999999863
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-16 Score=163.98 Aligned_cols=178 Identities=24% Similarity=0.223 Sum_probs=130.2
Q ss_pred cceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcce
Q 042733 24 EPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARI 94 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ 94 (531)
....+++++|+..-+..+..+.+|+|+.+..| |||||+|+|+|+|+.+. ..|.+.-...... +.
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~--~~G~l~k~~~~~~-----~~ 502 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS--TGGKLTKPTDGGP-----KD 502 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc--CCCeEEecccCCC-----Cc
Confidence 34789999999988754446778899888766 99999999999999773 2456554332211 34
Q ss_pred EEEEecCCCCCCCCcHHhH------------HHHHHHHHHHHHHhcCCchhhhcc----------------HHHHHHHHH
Q 042733 95 LGYCEQNDIHSPHDTLYDF------------THCLYMFIEEGMELVELNPFRQAL----------------FEQRKRLTV 146 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~~~~~~----------------~GerqRv~i 146 (531)
+-|+||.|.+.-. |.|+. +....+.+.+.++.++|.|..++. .||+||+++
T Consensus 503 lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ 581 (659)
T KOG0060|consen 503 LFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAF 581 (659)
T ss_pred eEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHH
Confidence 7899998754332 66653 111223455666666666554332 299999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
||.+.++|++-+|||-||++|......+.+.+++ .|.|.|-+.|..+. ...-|.++-|+.+|+
T Consensus 582 ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkSL--~kfHd~~L~~~g~g~ 644 (659)
T KOG0060|consen 582 ARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKSL--WKFHDYVLRMDGRGS 644 (659)
T ss_pred HHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHHH--HhhhhEEEEecCCCc
Confidence 9999999999999999999999999888887775 49999999998764 444577777764343
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-16 Score=151.60 Aligned_cols=75 Identities=15% Similarity=0.086 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C-CeEEEEecCCchHHHhccC--eEEEE
Q 042733 138 FEQRKRLTVAVEF----VANPSIISRDEPISGLDARAATTVIRMVRNTVDM-G-RTVVCTIHQPSIDIFYSFD--ELFLL 209 (531)
Q Consensus 138 ~GerqRv~iA~aL----~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g-~tvi~~~H~~~~~i~~~~d--~v~lL 209 (531)
.|||||+.++.++ +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||+... +.+.+| ++++|
T Consensus 129 ~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~~v~~l 207 (213)
T cd03277 129 GGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKMTVLCV 207 (213)
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCceEEEEE
Confidence 3999998877554 5899999999999999999999999999998876 5 579999998753 445555 78888
Q ss_pred ccCce
Q 042733 210 KQVGQ 214 (531)
Q Consensus 210 ~~~G~ 214 (531)
.+ |+
T Consensus 208 ~~-g~ 211 (213)
T cd03277 208 YN-GP 211 (213)
T ss_pred ec-Cc
Confidence 75 65
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.1e-19 Score=167.80 Aligned_cols=180 Identities=18% Similarity=0.210 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHhhcchHHH----------------------------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 042733 309 TKLFAWSWKLAQQRWTKQQHL----------------------------FNVMVSMYTAVLFLLVQNAGSLQLVAAVEWT 360 (531)
Q Consensus 309 ~q~~~l~~R~~~~~~~~~~~~----------------------------~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~ 360 (531)
+|++.+++|+++..|++..-. .++.|++++.+.+..+....+.......||.
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGFNRPGLIFGSIIFSFFSSISGSSISFERERG 80 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeehhhHHhhhhhcccchhhhhhhcc
Confidence 588888898888766443211 1233333333333333333333345678999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 042733 361 IFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKP 440 (531)
Q Consensus 361 v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~ 440 (531)
.+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.+++..++..++|.++++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~ 158 (210)
T PF01061_consen 81 TLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPSF 158 (210)
T ss_pred ccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhhh
Confidence 999999999999999999999999999999999999999999999887 788888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhc
Q 042733 441 QIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDF 490 (531)
Q Consensus 441 ~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef 490 (531)
+.|..+++++..++++++|.++|.+.+|.|+ |+. +||++|+.|++..++|
T Consensus 159 ~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 159 RDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999899 998 9999999999998876
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-16 Score=150.84 Aligned_cols=77 Identities=13% Similarity=0.062 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR-MVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
||||++.++++ +.+|+++++|||++|||+..+..+.. .++.+.+.|.++|++||+. ++...+|++..+.+ |++.+
T Consensus 95 g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~-g~l~~ 170 (200)
T cd03280 95 HMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVEN-ASMEF 170 (200)
T ss_pred HHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEE-EEEEE
Confidence 89999999987 58999999999999999999999964 6788877799999999983 56788999999986 89987
Q ss_pred cC
Q 042733 218 VG 219 (531)
Q Consensus 218 ~G 219 (531)
.+
T Consensus 171 ~~ 172 (200)
T cd03280 171 DP 172 (200)
T ss_pred ec
Confidence 74
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-16 Score=160.92 Aligned_cols=176 Identities=18% Similarity=0.313 Sum_probs=125.7
Q ss_pred ccceEEEEEeEEEEEeCCCccccccEE---------EEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcc
Q 042733 23 FEPHYISLNEIVYSVDMPQIGDLNSLS---------GAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFAR 93 (531)
Q Consensus 23 ~~~~~l~~~~ls~~~~~~~~~iL~~vs---------~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~ 93 (531)
..|..+-++||+|.|+. .++++++++ ..+||||.||||||++|.|...+ ..|+.+- ..+-
T Consensus 582 L~PPvLGlH~VtFgy~g-qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RK--------nhrL 650 (807)
T KOG0066|consen 582 LNPPVLGLHDVTFGYPG-QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRK--------NHRL 650 (807)
T ss_pred CCCCeeecccccccCCC-CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhc--------ccee
Confidence 35778999999999973 455666554 57899999999999999997654 2343321 2344
Q ss_pred eEEEEecCCC--CCCCCcHHhHHHH----HHHHHHHHHHhcCCchhhhccH------HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 94 ILGYCEQNDI--HSPHDTLYDFTHC----LYMFIEEGMELVELNPFRQALF------EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 94 ~igyv~Q~~~--~~~~ltv~e~~~~----~~~~~~~~l~~l~l~~~~~~~~------GerqRv~iA~aL~~~p~lllLDE 161 (531)
+||+..|... +....|..|+... -.+.....+..+||...+++.- |||-||++|..-+..|+||||||
T Consensus 651 ~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDE 730 (807)
T KOG0066|consen 651 RIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDE 730 (807)
T ss_pred eeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecC
Confidence 6888777532 3334444444111 1233455677788877666643 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCc
Q 042733 162 PISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVG 213 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G 213 (531)
||++||..+...+-+.+++. ...||+++||-.. +.+.-..+.++.+.|
T Consensus 731 PTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~ 778 (807)
T KOG0066|consen 731 PTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQG 778 (807)
T ss_pred CCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCC
Confidence 99999999999998888775 3469999999653 444444566665434
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-16 Score=161.20 Aligned_cols=179 Identities=17% Similarity=0.201 Sum_probs=130.7
Q ss_pred cceEEEEEeEEEEEeCCCccccccEE---------EEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcce
Q 042733 24 EPHYISLNEIVYSVDMPQIGDLNSLS---------GAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARI 94 (531)
Q Consensus 24 ~~~~l~~~~ls~~~~~~~~~iL~~vs---------~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ 94 (531)
.+..+++.++++.|+.+.-+++.+++ ..++++|+||||++|++.|...+ ..|.+.++ .|.+
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~--------~r~r 428 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRH--------PRLR 428 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeec--------ccce
Confidence 56789999999999743324555555 34567799999999999995432 23443333 2456
Q ss_pred EEEEecCCCCCCCCcHHhHHH-------HHHHHHHHHHHhcCCch-hhhcc-----HHHHHHHHHHHHHhhCCCeEEEeC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-------CLYMFIEEGMELVELNP-FRQAL-----FEQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-------~~~~~~~~~l~~l~l~~-~~~~~-----~GerqRv~iA~aL~~~p~lllLDE 161 (531)
++|-.|...-+..++|.+... ...+.++.-+..+|++. .+... .|||-||++|.....+|.+|+|||
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDE 508 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDE 508 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecC
Confidence 889888765444444443311 12334566788888864 33333 299999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 162 PISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
||+.||..+-..+.+.|+.. +-.||++|||.+ -+-..|+.+.+..+ |++.-
T Consensus 509 PTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~-g~vt~ 559 (582)
T KOG0062|consen 509 PTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVED-GKVTP 559 (582)
T ss_pred CCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcC-CcEEe
Confidence 99999999999888888775 446999999965 36678999999986 77753
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=158.01 Aligned_cols=172 Identities=17% Similarity=0.164 Sum_probs=107.2
Q ss_pred ceEEEEEeEEEEEeCCCccccccEE---------EEEcCCCchHHHHHHHHhCCC-CCceEEEEEEEcCcccc----hhh
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLS---------GAFRPGGAGKTTLMDVLAGRK-PGGYITRNITVSGYPEK----QET 90 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs---------~~i~~gGaGKTTLLk~L~G~~-~~g~~~G~i~~~g~~~~----~~~ 90 (531)
..+|...+.+..|+ .+.+|++-+ |.+|+||+|||||||+|+.-. +.-.+.-++.-...+.. ..+
T Consensus 78 ~~Di~~~~fdLa~G--~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D 155 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG--GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESD 155 (582)
T ss_pred ccceeeeeeeeeec--chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhcc
Confidence 34678888888885 566777655 556677999999999998721 10001111110000000 000
Q ss_pred hcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhc------cHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQA------LFEQRKRLTVAVEFVANPSIISRDEPIS 164 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~------~~GerqRv~iA~aL~~~p~lllLDEPts 164 (531)
.. +.-++.++..+...+ ...+..+.+|..+|.++-... +.|-|-|+++||||..+|++|+|||||+
T Consensus 156 ~~-~~dfl~~e~~l~~~~-------~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTN 227 (582)
T KOG0062|consen 156 TE-RLDFLAEEKELLAGL-------TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTN 227 (582)
T ss_pred HH-HHHHHHhhhhhhccc-------hHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcc
Confidence 00 001111211111100 112223447777887654332 2389999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 165 GLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 165 gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
.||..+...+-+.|..+ +.|+|+++||-+ -+-..|..|+-+.
T Consensus 228 hLDv~av~WLe~yL~t~---~~T~liVSHDr~-FLn~V~tdIIH~~ 269 (582)
T KOG0062|consen 228 HLDVVAVAWLENYLQTW---KITSLIVSHDRN-FLNTVCTDIIHLE 269 (582)
T ss_pred cchhHHHHHHHHHHhhC---CceEEEEeccHH-HHHHHHHHHHHHh
Confidence 99999999999988775 489999999954 2445677777665
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-15 Score=155.24 Aligned_cols=166 Identities=21% Similarity=0.256 Sum_probs=116.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchh------------hhcc------eEEEEecCCCCCC-
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQE------------TFAR------ILGYCEQNDIHSP- 106 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~------------~~~~------~igyv~Q~~~~~~- 106 (531)
..|.|.+|+||-||||-+|+|+|...+. -| ..++.|..+. .+++ ++..=+|--.+.|
T Consensus 100 G~V~GilG~NGiGKsTalkILaGel~PN--LG--~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk 175 (591)
T COG1245 100 GKVVGILGPNGIGKSTALKILAGELKPN--LG--RYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPK 175 (591)
T ss_pred CcEEEEEcCCCccHHHHHHHHhCccccC--CC--CCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHH
Confidence 4699999999999999999999964431 11 1122111100 0110 1111122211111
Q ss_pred --CCcHHhHHHHH--HHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 042733 107 --HDTLYDFTHCL--YMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRM 177 (531)
Q Consensus 107 --~ltv~e~~~~~--~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~ 177 (531)
.-||.|..+.. ....+++++.++|++..++-+ ||-||++||.++.+++++.++|||||-||...+....+.
T Consensus 176 ~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~ 255 (591)
T COG1245 176 VVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARV 255 (591)
T ss_pred HhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHH
Confidence 12555542222 235788999999998877766 999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEecCCchHHHh-ccCeEEEEccCceeeecC
Q 042733 178 VRNTVDMGRTVVCTIHQPSIDIFY-SFDELFLLKQVGQEISVG 219 (531)
Q Consensus 178 L~~l~~~g~tvi~~~H~~~~~i~~-~~d~v~lL~~~G~~v~~G 219 (531)
++++++.+++||++.||+. +.+ +.|-|.++. |+--..|
T Consensus 256 Irel~~~~k~ViVVEHDLa--vLD~lsD~vhI~Y--G~pg~YG 294 (591)
T COG1245 256 IRELAEDGKYVIVVEHDLA--VLDYLSDFVHILY--GEPGVYG 294 (591)
T ss_pred HHHHhccCCeEEEEechHH--HHHHhhheeEEEe--cCCccce
Confidence 9999988999999999975 444 578887775 5444444
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.60 E-value=7e-15 Score=148.31 Aligned_cols=72 Identities=21% Similarity=0.303 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccC
Q 042733 138 FEQRKRLTVAVEFVA----NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQV 212 (531)
Q Consensus 138 ~GerqRv~iA~aL~~----~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~ 212 (531)
.|||||+++|++++. +|+++++||||+|||+..+..+.+.++++.+ +.|+|++||++. +...+|+++.+.++
T Consensus 173 ~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~~~ 248 (276)
T cd03241 173 GGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVEKE 248 (276)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEEEe
Confidence 399999999997654 9999999999999999999999999999864 789999999975 46789999999863
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.2e-15 Score=135.71 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 138 FEQRKRLTVAVEFVA----NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 138 ~GerqRv~iA~aL~~----~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
.||+||+++|++|.. +|+++++|||++|+|+..+..+.+.+.++.++|.++|++||+++ +.+.+|+++.|..
T Consensus 80 ~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~~ 155 (162)
T cd03227 80 GGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIKK 155 (162)
T ss_pred ccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence 389999999999987 78999999999999999999999999987666889999999975 4567899999864
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.4e-15 Score=141.88 Aligned_cols=122 Identities=14% Similarity=0.127 Sum_probs=83.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
++.+..||||||||||+|+|+|... +...|.+... + .+++|.+.+++.+|+.|+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a----~--~~~~q~~~l~~~~~~~d~l~~---------- 82 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCA----S--SFELPPVKIFTSIRVSDDLRD---------- 82 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEec----C--ccCcccceEEEeccchhcccc----------
Confidence 5778999999999999999998431 0112222211 1 255666777888888775211
Q ss_pred hcCCchhhhccHHHHHHHHHHHHHhh--CCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHHcCCeEEEEecCCch
Q 042733 127 LVELNPFRQALFEQRKRLTVAVEFVA--NPSIISRDEPISGLDARAATTVI-RMVRNTVDMGRTVVCTIHQPSI 197 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv~iA~aL~~--~p~lllLDEPtsgLD~~~~~~i~-~~L~~l~~~g~tvi~~~H~~~~ 197 (531)
++... ..+++|+.-+...+. +|+++++|||++|+|+..+..+. ..++.+.+.|.|+|++||+++.
T Consensus 83 --~~s~~----~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~ 150 (199)
T cd03283 83 --GISYF----YAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLEL 150 (199)
T ss_pred --ccChH----HHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHH
Confidence 11110 123344544444455 99999999999999999998775 4688887779999999999763
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-14 Score=163.70 Aligned_cols=96 Identities=20% Similarity=0.274 Sum_probs=84.7
Q ss_pred HHHhcCCchh-hhccH-----HHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 124 GMELVELNPF-RQALF-----EQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 124 ~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
.++.+||.+. .++.+ ||||||.||++|..+| ++++|||||+|||+..+.++.+.|++++++|.|||+++|++
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 5777888755 45554 9999999999999997 99999999999999999999999999988899999999998
Q ss_pred chHHHhccCeEEEE------ccCceeeecCCCC
Q 042733 196 SIDIFYSFDELFLL------KQVGQEISVGPLG 222 (531)
Q Consensus 196 ~~~i~~~~d~v~lL------~~~G~~v~~G~~~ 222 (531)
+ ++ ..+|++++| . +|++++.|+++
T Consensus 552 ~-~i-~~aD~vi~LgpgaG~~-~G~iv~~g~~~ 581 (943)
T PRK00349 552 D-TI-RAADYIVDIGPGAGVH-GGEVVASGTPE 581 (943)
T ss_pred H-HH-HhCCEEEEeccccCCC-CCEEeeccCHH
Confidence 7 34 469999999 6 49999999864
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-14 Score=137.00 Aligned_cols=144 Identities=10% Similarity=0.000 Sum_probs=94.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
++....||||||||||||+|++..--+ ..|. .... .+..+++..|...+ ....+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~-~~g~------~~~~--~~~~i~~~dqi~~~---~~~~d~------------- 84 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLA-QIGC------FVPA--ESASIPLVDRIFTR---IGAEDS------------- 84 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHH-HcCC------Cccc--cccccCCcCEEEEE---ecCccc-------------
Confidence 678899999999999999999521000 0011 0000 01223443332111 111110
Q ss_pred hcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCeEEEEecCCchHHHhccCe
Q 042733 127 LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR-MVRNTVDMGRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~d~ 205 (531)
+.....+..++.||++.+.+++.+|+++++||||+|+|+.....+.. +++.+.+.+.++|++||++ ++.+.+|+
T Consensus 85 ---i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~ 159 (202)
T cd03243 85 ---ISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQ 159 (202)
T ss_pred ---ccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhc
Confidence 00001112256777888899999999999999999999999888765 5666766789999999985 46778888
Q ss_pred EEEEccCceeeecCCC
Q 042733 206 LFLLKQVGQEISVGPL 221 (531)
Q Consensus 206 v~lL~~~G~~v~~G~~ 221 (531)
+..++. |++...++.
T Consensus 160 ~~~l~~-~~~~~~~~~ 174 (202)
T cd03243 160 VPGVKN-LHMEELITT 174 (202)
T ss_pred CCCeEE-EEEEEEecC
Confidence 888876 888877754
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-14 Score=139.84 Aligned_cols=149 Identities=13% Similarity=0.089 Sum_probs=100.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE-EEecCCCCCC
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG-YCEQNDIHSP 106 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig-yv~Q~~~~~~ 106 (531)
...+|++...+. .++.+..||||+|||||+|+++-. .+...+| |||.+....+
T Consensus 18 ~v~~~~~~~~~~------~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~ 71 (222)
T cd03285 18 FIPNDVTLTRGK------SRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP 71 (222)
T ss_pred eEEeeEEEeecC------CeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe
Confidence 346677665531 357788899999999999999721 0011122 4444321111
Q ss_pred CCcHHhHHHHHHHHHHHHHHhcCCchhh--hccHHHHHHHHHHHHH--hhCCCeEEEeCC---CCCCCHHHHHHHHHHHH
Q 042733 107 HDTLYDFTHCLYMFIEEGMELVELNPFR--QALFEQRKRLTVAVEF--VANPSIISRDEP---ISGLDARAATTVIRMVR 179 (531)
Q Consensus 107 ~ltv~e~~~~~~~~~~~~l~~l~l~~~~--~~~~GerqRv~iA~aL--~~~p~lllLDEP---tsgLD~~~~~~i~~~L~ 179 (531)
..+++++.+++.+.. +.+.|+++++.+++++ +.+|++++|||| |++||+.+.... .++
T Consensus 72 -------------~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~ 136 (222)
T cd03285 72 -------------IVDCILARVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAE 136 (222)
T ss_pred -------------ccceeEeeeccccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHH
Confidence 122334444444322 2234889999999998 899999999999 999999888543 334
Q ss_pred HHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 180 NTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 180 ~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
.+.+ .|.++|++||+ .++.+.||++..+++ |++...+.
T Consensus 137 ~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~-g~~~~~~~ 175 (222)
T cd03285 137 YIATQIKCFCLFATHF--HELTALADEVPNVKN-LHVTALTD 175 (222)
T ss_pred HHHhcCCCeEEEEech--HHHHHHhhcCCCeEE-EEEEEEEe
Confidence 4544 48899999996 467889999999986 89887764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.2e-14 Score=159.93 Aligned_cols=95 Identities=21% Similarity=0.296 Sum_probs=82.3
Q ss_pred HHhcCCchh-hhccH-----HHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 125 MELVELNPF-RQALF-----EQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 125 l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+..+||... .++.+ ||+|||.||++|..+| ++++|||||+|||+..+..+.+.|++++++|.|||+++|+++
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~ 550 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE 550 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 566677654 34433 9999999999999986 899999999999999999999999999888999999999976
Q ss_pred hHHHhccCeEEEE------ccCceeeecCCCC
Q 042733 197 IDIFYSFDELFLL------KQVGQEISVGPLG 222 (531)
Q Consensus 197 ~~i~~~~d~v~lL------~~~G~~v~~G~~~ 222 (531)
.+ ..||+++.| + +|++++.|+++
T Consensus 551 -~i-~~aD~vi~LgpgaG~~-~G~Iv~~g~~~ 579 (924)
T TIGR00630 551 -TI-RAADYVIDIGPGAGIH-GGEVVASGTPE 579 (924)
T ss_pred -HH-hhCCEEEEecccccCC-CCEEeeccCHH
Confidence 34 589999999 6 59999999864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-13 Score=149.12 Aligned_cols=82 Identities=22% Similarity=0.344 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc-----
Q 042733 139 EQRKRLTVAVEFVANP---SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK----- 210 (531)
Q Consensus 139 GerqRv~iA~aL~~~p---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~----- 210 (531)
||.|||-+|.+|..+. .+.+|||||+||-....+++++.|.+|.++|.|||++.|+++ +...+|.|+=|-
T Consensus 826 GEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~ 903 (935)
T COG0178 826 GEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGD 903 (935)
T ss_pred hHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCC
Confidence 8999999999999887 899999999999999999999999999999999999999875 788899999874
Q ss_pred cCceeeecCCCC
Q 042733 211 QVGQEISVGPLG 222 (531)
Q Consensus 211 ~~G~~v~~G~~~ 222 (531)
.||++++.|+|+
T Consensus 904 ~GG~iva~GTPe 915 (935)
T COG0178 904 GGGEIVASGTPE 915 (935)
T ss_pred CCceEEEecCHH
Confidence 578999999985
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.3e-13 Score=134.07 Aligned_cols=135 Identities=18% Similarity=0.205 Sum_probs=91.5
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc----hhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHH
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK----QETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEG 124 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~----~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~ 124 (531)
.+.+||+|||||||+++|+|..++ .+|++.++|.+.. ..++.+.+++++|++. .+..+|.++-..
T Consensus 114 ~~i~g~~g~GKttl~~~l~~~~~~--~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~k-------- 182 (270)
T TIGR02858 114 TLIISPPQCGKTTLLRDLARILST--GISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCPK-------- 182 (270)
T ss_pred EEEEcCCCCCHHHHHHHHhCccCC--CCceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccchH--------
Confidence 478899999999999999998764 3689999998753 2345556788898753 345555543110
Q ss_pred HHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHH----
Q 042733 125 MELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIF---- 200 (531)
Q Consensus 125 l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~---- 200 (531)
.....+....++|+++++|||++ .+.+..+++.+ ++|.++|+++|+++.+-.
T Consensus 183 -----------------~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~~G~~vI~ttH~~~~~~~~~r~ 238 (270)
T TIGR02858 183 -----------------AEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-HAGVSIIATAHGRDVEDLYKRP 238 (270)
T ss_pred -----------------HHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-hCCCEEEEEechhHHHHHHhCh
Confidence 11112333447999999999974 23344445444 469999999998654222
Q ss_pred --------hccCeEEEEccCceeeecCCC
Q 042733 201 --------YSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 201 --------~~~d~v~lL~~~G~~v~~G~~ 221 (531)
..|||+++|++ |+ ..|++
T Consensus 239 ~~~~l~~~~~~~r~i~L~~-~~--~~g~~ 264 (270)
T TIGR02858 239 VFKELIENEAFERYVVLSR-RK--GPGTV 264 (270)
T ss_pred HHHHHHhcCceEEEEEEec-CC--CCCce
Confidence 56899999986 55 55554
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-13 Score=160.83 Aligned_cols=96 Identities=19% Similarity=0.231 Sum_probs=83.4
Q ss_pred HHhcCCchh-hhccH-----HHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 125 MELVELNPF-RQALF-----EQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 125 l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+..+|+.+. .++.+ ||+|||.||++|..+| ++++|||||+|||+.++..+.+.|++++++|.|||+++|+++
T Consensus 460 L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~ 539 (1809)
T PRK00635 460 LIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ 539 (1809)
T ss_pred HHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 455677754 34443 9999999999999999 899999999999999999999999999888999999999976
Q ss_pred hHHHhccCeEEEEc-----cCceeeecCCCC
Q 042733 197 IDIFYSFDELFLLK-----QVGQEISVGPLG 222 (531)
Q Consensus 197 ~~i~~~~d~v~lL~-----~~G~~v~~G~~~ 222 (531)
+.+.||++++|. .+|++++.|+++
T Consensus 540 --vi~~aDrVi~L~pGag~~gG~Iv~~G~~~ 568 (1809)
T PRK00635 540 --MISLADRIIDIGPGAGIFGGEVLFNGSPR 568 (1809)
T ss_pred --HHHhCCEEEEEcCCcccCCCEEEEecCHH
Confidence 568899999995 248999999864
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5e-13 Score=139.43 Aligned_cols=156 Identities=22% Similarity=0.247 Sum_probs=104.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcC---------CCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRP---------GGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~---------gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
|.++|+-.-.+. ...+...+++.++| ||||||+|.|+|+|+.+- ++|.-..+ ....+-|+
T Consensus 482 I~lenIpvItP~-~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv--------y~g~L~~P--~~~~mFYI 550 (728)
T KOG0064|consen 482 IILENIPVITPA-GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV--------YNGLLSIP--RPNNIFYI 550 (728)
T ss_pred eEEecCceeccC-cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc--------cCCeeecC--CCcceEec
Confidence 555555443331 22355566665555 499999999999999862 22321111 12348899
Q ss_pred ecCCCCCCCCcHHh----------HHH--HHHHHHHHHHHhcCCchhhhcc--------------HHHHHHHHHHHHHhh
Q 042733 99 EQNDIHSPHDTLYD----------FTH--CLYMFIEEGMELVELNPFRQAL--------------FEQRKRLTVAVEFVA 152 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e----------~~~--~~~~~~~~~l~~l~l~~~~~~~--------------~GerqRv~iA~aL~~ 152 (531)
||.|... .-|.+| ..+ ...+..+.+++.+.|++...+- .|||||+++||.+.+
T Consensus 551 PQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yH 629 (728)
T KOG0064|consen 551 PQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYH 629 (728)
T ss_pred cCCCccC-cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhc
Confidence 9986543 223333 211 1122344555555555443332 189999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchH
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSID 198 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~ 198 (531)
+|+.-+|||-||+..+.....+.+..++ .|.+.|-++|+|+..
T Consensus 630 rPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpslw 672 (728)
T KOG0064|consen 630 RPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSLW 672 (728)
T ss_pred CcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccHH
Confidence 9999999999999999998888887765 499999999999853
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-13 Score=139.81 Aligned_cols=185 Identities=16% Similarity=0.144 Sum_probs=115.9
Q ss_pred ceEEEEEeEEEEEeCCCccccccE---------EEEEcCCCchHHHHHHHHhCCC---CCce----EEEEEEEcCcccch
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSL---------SGAFRPGGAGKTTLMDVLAGRK---PGGY----ITRNITVSGYPEKQ 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~v---------s~~i~~gGaGKTTLLk~L~G~~---~~g~----~~G~i~~~g~~~~~ 88 (531)
.+.|.++|.+.+.. .+.++.+- .|.+||||-|||||||.|+.+. ++.. ..-+|..+..+.-.
T Consensus 262 a~DIKiEnF~ISA~--Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~ 339 (807)
T KOG0066|consen 262 AMDIKIENFDISAQ--GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAID 339 (807)
T ss_pred cccceeeeeeeecc--cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHH
Confidence 46788888777664 23333333 3667899999999999999862 2211 11223333222100
Q ss_pred ----hhhcceEEEEecCCCC-----CCCCcHHhHH------------HHHHHHHHHHHHhcCCchhhhcc------HHHH
Q 042733 89 ----ETFARILGYCEQNDIH-----SPHDTLYDFT------------HCLYMFIEEGMELVELNPFRQAL------FEQR 141 (531)
Q Consensus 89 ----~~~~~~igyv~Q~~~~-----~~~ltv~e~~------------~~~~~~~~~~l~~l~l~~~~~~~------~Ger 141 (531)
.+. ++...+..++.+ -...|+.|-. .....+...++.-+|.++-.... .|-|
T Consensus 340 tvl~aD~-kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWR 418 (807)
T KOG0066|consen 340 TVLKADK-KRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWR 418 (807)
T ss_pred HHHHhhH-HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCcee
Confidence 000 111111111110 1223443320 01123455667777765433222 2899
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 142 KRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 142 qRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
-||++||||..+|-+|.|||||++||..+...+-+.|+.++ +|.++++||-+. +-..|..|+-|++ -++-|
T Consensus 419 MRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgF-LD~VCtdIIHLD~-qkLhy 489 (807)
T KOG0066|consen 419 MRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGF-LDSVCTDIIHLDN-QKLHY 489 (807)
T ss_pred eehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccch-HHHHHHHHhhhhh-hhhhh
Confidence 99999999999999999999999999999999988988874 599999999763 5567899999986 45543
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-12 Score=128.55 Aligned_cols=71 Identities=14% Similarity=0.267 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhcc---CeE
Q 042733 139 EQRKRLTVAVEFV---------ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSF---DEL 206 (531)
Q Consensus 139 GerqRv~iA~aL~---------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~---d~v 206 (531)
||||++++|++|+ .+|+++++||||++||+..+..+.+.++++ + .+++++|+.. .+...| +++
T Consensus 187 Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~-q~ii~~~~~~-~~~~~~~~~~~i 261 (270)
T cd03242 187 GQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---V-QTFVTTTDLA-DFDALWLRRAQI 261 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---C-CEEEEeCCch-hccchhccCccE
Confidence 9999999999985 799999999999999999999999999765 2 3555555543 344555 678
Q ss_pred EEEccCcee
Q 042733 207 FLLKQVGQE 215 (531)
Q Consensus 207 ~lL~~~G~~ 215 (531)
+.+++ |++
T Consensus 262 ~~l~~-g~i 269 (270)
T cd03242 262 FRVDA-GTL 269 (270)
T ss_pred EEEeC-cEE
Confidence 88875 774
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=133.27 Aligned_cols=163 Identities=22% Similarity=0.243 Sum_probs=114.9
Q ss_pred cccccEEEEEcCC---------CchHHHHHHHHhCCCCC------ceEEEEEEEcCcccchhhhcceEEEEecCCC-CCC
Q 042733 43 GDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPG------GYITRNITVSGYPEKQETFARILGYCEQNDI-HSP 106 (531)
Q Consensus 43 ~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~------g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~-~~~ 106 (531)
.+|+|+++.++|| ||||||||++|.|.... .+.+|.+.+--.. ..+.+|-+.. -+.
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~f~ 468 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPEFG 468 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccccccC
Confidence 6899999999999 99999999999995321 1234555442211 1233333321 122
Q ss_pred CCcHHhHHHHH---HHHHHHHHHhcCCchh-------hhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 042733 107 HDTLYDFTHCL---YMFIEEGMELVELNPF-------RQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR 176 (531)
Q Consensus 107 ~ltv~e~~~~~---~~~~~~~l~~l~l~~~-------~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~ 176 (531)
..|+.|..... -....++++..|+.+. .+.+.|||.|+.||.++..+|.+++.||--+.||+.++..+.+
T Consensus 469 ~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVAr 548 (593)
T COG2401 469 EVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVAR 548 (593)
T ss_pred chhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHH
Confidence 34554431111 1225567888888642 2333499999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCeEEEEecCCchHHHhc-cCeEEEEccCcee
Q 042733 177 MVRNTVDM-GRTVVCTIHQPSIDIFYS-FDELFLLKQVGQE 215 (531)
Q Consensus 177 ~L~~l~~~-g~tvi~~~H~~~~~i~~~-~d~v~lL~~~G~~ 215 (531)
-+.+++++ |.|++++||.|+. +-.+ -|+++++.- |++
T Consensus 549 kiselaRe~giTlivvThrpEv-~~AL~PD~li~vgY-g~v 587 (593)
T COG2401 549 KISELAREAGITLIVVTHRPEV-GNALRPDTLILVGY-GKV 587 (593)
T ss_pred HHHHHHHHhCCeEEEEecCHHH-HhccCCceeEEeec-ccc
Confidence 99999975 9999999999863 2233 488887754 443
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.31 E-value=9e-12 Score=119.94 Aligned_cols=131 Identities=11% Similarity=0.133 Sum_probs=81.4
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCC
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPH 107 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ 107 (531)
...+|+++..+. .++.+..||||+|||||+|++++..--. . -|. ++| ...+.
T Consensus 17 ~v~~~~~~~~~~------~~~~~l~G~n~~GKstll~~i~~~~~la----~---~G~------------~vp---a~~~~ 68 (204)
T cd03282 17 FIPNDIYLTRGS------SRFHIITGPNMSGKSTYLKQIALLAIMA----Q---IGC------------FVP---AEYAT 68 (204)
T ss_pred EEEeeeEEeeCC------CcEEEEECCCCCCHHHHHHHHHHHHHHH----H---cCC------------Ccc---hhhcC
Confidence 456777766642 2678889999999999999998742100 0 011 111 01111
Q ss_pred CcHHhHHHHHHHHHHHHHHhcCCch----hhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHH
Q 042733 108 DTLYDFTHCLYMFIEEGMELVELNP----FRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV-IRMVRNTV 182 (531)
Q Consensus 108 ltv~e~~~~~~~~~~~~l~~l~l~~----~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i-~~~L~~l~ 182 (531)
+++.+ +++..++..+ -..+..+|.+|+..+.+++.+|++++||||++|+|+.....+ ...++.+.
T Consensus 69 l~~~d----------~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~ 138 (204)
T cd03282 69 LPIFN----------RLLSRLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI 138 (204)
T ss_pred ccChh----------heeEecCCccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH
Confidence 11111 1111112111 111112444466777888999999999999999999876665 45677777
Q ss_pred HcCCeEEEEecCCc
Q 042733 183 DMGRTVVCTIHQPS 196 (531)
Q Consensus 183 ~~g~tvi~~~H~~~ 196 (531)
+.|.++|++||+.+
T Consensus 139 ~~~~~~i~~TH~~~ 152 (204)
T cd03282 139 KKESTVFFATHFRD 152 (204)
T ss_pred hcCCEEEEECChHH
Confidence 78999999999865
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-12 Score=121.94 Aligned_cols=142 Identities=13% Similarity=-0.008 Sum_probs=91.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
++....||||||||||||+|++..--+ . .|..... .+..++++.| .++.+++.++...
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~----~---~g~~vp~--~~~~i~~~~~---i~~~~~~~~~ls~---------- 88 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLA----Q---IGSFVPA--SKAEIGVVDR---IFTRIGASDDLAG---------- 88 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHh----c---cCCeecc--ccceecceee---EeccCCchhhhcc----------
Confidence 667889999999999999998732110 0 1211111 1245677755 3566666553211
Q ss_pred hcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhc
Q 042733 127 LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEP---ISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYS 202 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEP---tsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~ 202 (531)
|. .+...|+++++-+...+.+|++++|||| |+++|..+. ....++.+.+. +.++|++||+. ++.+.
T Consensus 89 --g~----s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l 158 (216)
T cd03284 89 --GR----STFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTEL 158 (216)
T ss_pred --Cc----chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHH
Confidence 11 1112455666666666789999999999 888887552 23345555555 88999999995 46777
Q ss_pred cCeEEEEccCceeeecCCC
Q 042733 203 FDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 203 ~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++..+.+ |++...+..
T Consensus 159 ~~~~~~v~~-~~~~~~~~~ 176 (216)
T cd03284 159 EGKLPRVKN-FHVAVKEKG 176 (216)
T ss_pred hhcCCCeEE-EEEEEEeeC
Confidence 887766665 787766654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-12 Score=119.94 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHHc-CCeEEEEecCCchHHHhccCe
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVI-RMVRNTVDM-GRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~-~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~ 205 (531)
+|++|++-+...+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||+++ +...+|+
T Consensus 64 ~~~~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~--l~~~~~~ 130 (185)
T smart00534 64 VEMKETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE--LTKLADE 130 (185)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHHHhhc
Confidence 4555544444444599999999999999999887765 556777764 899999999974 5666664
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-11 Score=117.94 Aligned_cols=120 Identities=13% Similarity=0.168 Sum_probs=79.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC--CCCceEEEEEEEcCcccchhhhcceEEEEecCCCCC-CCCcHHhHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGR--KPGGYITRNITVSGYPEKQETFARILGYCEQNDIHS-PHDTLYDFTHCLYMFIEE 123 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~--~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~-~~ltv~e~~~~~~~~~~~ 123 (531)
.+....||||+|||||||.++.. ... .|.... +. .-.++|..|..... ...++.+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~---~G~~v~-a~-------~~~~~~~d~i~~~l~~~~si~~----------- 87 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAH---IGSFVP-AD-------SATIGLVDKIFTRMSSRESVSS----------- 87 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHh---CCCeeE-cC-------CcEEeeeeeeeeeeCCccChhh-----------
Confidence 45678899999999999999842 110 111111 10 12356666643221 1112211
Q ss_pred HHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHHc---CCeEEEEecCCch
Q 042733 124 GMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV-IRMVRNTVDM---GRTVVCTIHQPSI 197 (531)
Q Consensus 124 ~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i-~~~L~~l~~~---g~tvi~~~H~~~~ 197 (531)
++ .+..-|.||++++++++.+|+++++|||++|+|+.....+ ...++++.+. +.++|++||+++.
T Consensus 88 -----~~----S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l 156 (213)
T cd03281 88 -----GQ----SAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHEL 156 (213)
T ss_pred -----cc----chHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHH
Confidence 11 1222578999999999999999999999999999765554 5688888764 3489999999753
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=119.55 Aligned_cols=148 Identities=19% Similarity=0.259 Sum_probs=108.5
Q ss_pred EEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHH-------HHHHHH
Q 042733 50 GAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHC-------LYMFIE 122 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~-------~~~~~~ 122 (531)
-.++.||.|||||+++++|+.++. ..|++-. -.++|=||.-.--..-||++..+. ..+.+.
T Consensus 371 vmlgEngtgkTTfi~mlag~~~pd-~~~e~p~-----------lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~ 438 (592)
T KOG0063|consen 371 VMLGENGTGKTTFIRMLAGRLKPD-EGGEIPV-----------LNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVN 438 (592)
T ss_pred EEEccCCcchhHHHHHHhcCCCCC-ccCcccc-----------cceeccccccCccccchHHHHHHHHhHhhhcCHHHHH
Confidence 445666999999999999975532 1122211 125566665433345577776221 234577
Q ss_pred HHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCeEEEEecCCc
Q 042733 123 EGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV-DMGRTVVCTIHQPS 196 (531)
Q Consensus 123 ~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~ 196 (531)
++++.+.+++..|..+ ||+|||++|..|-..+++.+.|||.+-||+..+..--+.+++.. +.++|-.++.||.-
T Consensus 439 dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfI 518 (592)
T KOG0063|consen 439 DVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFI 518 (592)
T ss_pred hhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHH
Confidence 8888888887776665 89999999999999999999999999999999998888888754 56899999999854
Q ss_pred hHHHhccCeEEEEc
Q 042733 197 IDIFYSFDELFLLK 210 (531)
Q Consensus 197 ~~i~~~~d~v~lL~ 210 (531)
.+ -.++|||++..
T Consensus 519 ma-TYladrvivf~ 531 (592)
T KOG0063|consen 519 MA-TYLADRVIVFE 531 (592)
T ss_pred HH-HhhcceeEEEe
Confidence 32 23678888774
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-10 Score=111.60 Aligned_cols=86 Identities=17% Similarity=0.259 Sum_probs=62.6
Q ss_pred HHHHHHhcCCchhhhccHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 121 IEEGMELVELNPFRQALFEQRKRLTVAVEFV----ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 121 ~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~----~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+.+.++..++... ..+.|||.+++||.-|+ .+.++++||||.++||...+..+.++|+++.+ +.-+|++||++
T Consensus 123 ~~~~l~~~~i~~~-~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~- 199 (220)
T PF02463_consen 123 LEELLPEVGISPE-FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHNP- 199 (220)
T ss_dssp HHHHHHCTTTTTT-GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-H-
T ss_pred ccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-
Confidence 4555666555443 44559999999997664 47789999999999999999999999998864 46799999985
Q ss_pred hHHHhccCeEEEEc
Q 042733 197 IDIFYSFDELFLLK 210 (531)
Q Consensus 197 ~~i~~~~d~v~lL~ 210 (531)
+.+..+|+.+.+.
T Consensus 200 -~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 200 -EMFEDADKLIGVT 212 (220)
T ss_dssp -HHHTT-SEEEEEE
T ss_pred -ccccccccccccc
Confidence 4688889887664
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.4e-10 Score=124.33 Aligned_cols=70 Identities=19% Similarity=0.331 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 139 EQRKRLTVAVEFVAN----PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 139 GerqRv~iA~aL~~~----p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ +++||++||+|. +...+|+++++.+
T Consensus 444 Ge~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l~k 517 (563)
T TIGR00634 444 GELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKVEK 517 (563)
T ss_pred hHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEEEE
Confidence 899999999999985 699999999999999999999999999874 899999999975 4468999999985
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.1e-10 Score=124.08 Aligned_cols=73 Identities=19% Similarity=0.349 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHh----------hCCCeEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEE
Q 042733 139 EQRKRLTVAVEFV----------ANPSIISRDEPI-SGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELF 207 (531)
Q Consensus 139 GerqRv~iA~aL~----------~~p~lllLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~ 207 (531)
|||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ .|.|||++||++. ....+|+++
T Consensus 472 Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~~~~d~~~ 547 (562)
T PHA02562 472 GEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DPQKFDRHL 547 (562)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--chhhhhcEE
Confidence 9999999999887 599999999998 789999999999999988 5889999999965 456789999
Q ss_pred EEccCcee
Q 042733 208 LLKQVGQE 215 (531)
Q Consensus 208 lL~~~G~~ 215 (531)
.|.+.|+.
T Consensus 548 ~l~~~~~~ 555 (562)
T PHA02562 548 KMEKVGRF 555 (562)
T ss_pred EEEEECCe
Confidence 99864443
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=4e-10 Score=127.94 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHHcCCeEEEEecCCchHH
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV-IRMVRNTVDMGRTVVCTIHQPSIDI 199 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i-~~~L~~l~~~g~tvi~~~H~~~~~i 199 (531)
|+++++.|++.+ .+|+++++|||++|+|+.....+ ..+++.+.+.|.++|++||+.+...
T Consensus 389 ~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 389 HMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred HHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 788888887766 79999999999999999999998 5678888778999999999976433
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-09 Score=120.06 Aligned_cols=70 Identities=19% Similarity=0.359 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 139 EQRKRLTVAVEFVA----NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 139 GerqRv~iA~aL~~----~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+|. +...+|+.+.+.+
T Consensus 434 Ge~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~k 507 (553)
T PRK10869 434 GELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVSK 507 (553)
T ss_pred HHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEec
Confidence 89999999999997 5899999999999999999999999999964 689999999985 4578999999975
|
|
| >TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-09 Score=102.92 Aligned_cols=117 Identities=9% Similarity=-0.152 Sum_probs=101.0
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042733 372 SAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFY 451 (531)
Q Consensus 372 ~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~A~~~~~~~~ 451 (531)
+++.++++|.+..++..+++++++..+.|++.|+++. +++.+++.+++..++..+++.++++++++...+. +..++
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence 4567899999999999999999999999999999864 5778888888899999999999999999775444 44455
Q ss_pred HHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhccC
Q 042733 452 TIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFLH 492 (531)
Q Consensus 452 ~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~~ 492 (531)
.+.++++|.+.|.+.||.|+ |+. ++|.+|+.+++-...+++
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~ 176 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGG 176 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCC
Confidence 67777899999999999999 999 999999999998877754
|
This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.3e-10 Score=107.40 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 042733 140 QRKRLTVAVEFVANPSIISRDEPI-----SGLDARAATTVIRMVRNTVD 183 (531)
Q Consensus 140 erqRv~iA~aL~~~p~lllLDEPt-----sgLD~~~~~~i~~~L~~l~~ 183 (531)
|++++.||++++.+|+++++|||| +|||+.+++.+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 889999999999999999999999 99999999999999999864
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-09 Score=127.28 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEE
Q 042733 138 FEQRKRLTVAVEFVA----------NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELF 207 (531)
Q Consensus 138 ~GerqRv~iA~aL~~----------~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~ 207 (531)
.||++||+||++|+. +|++||+||||+|||+.+...+++.|+.+.+.|++|+++||++.. ....+|+|.
T Consensus 953 gGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~-~~~~~~~i~ 1031 (1042)
T TIGR00618 953 GGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF-RERIPHRIL 1031 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH-HHhhCCEEE
Confidence 399999999999986 799999999999999999999999999998889999999999873 667889999
Q ss_pred EEcc
Q 042733 208 LLKQ 211 (531)
Q Consensus 208 lL~~ 211 (531)
+++.
T Consensus 1032 v~~~ 1035 (1042)
T TIGR00618 1032 VKKT 1035 (1042)
T ss_pred EEEC
Confidence 9964
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=99.71 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=80.6
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCC---CCCceEEEEEEEcCcccchhhhcceEEEEecCCCC
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGR---KPGGYITRNITVSGYPEKQETFARILGYCEQNDIH 104 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~---~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~ 104 (531)
....|+++.... .++....||||+||||++|++++. ... |.. +-+....-..+.+...-+..+|.+
T Consensus 19 ~v~n~i~~~~~~------g~~~~itG~N~~GKStll~~i~~~~~la~~----G~~-v~a~~~~~~~~~~i~~~~~~~d~~ 87 (222)
T cd03287 19 FVPNDIHLSAEG------GYCQIITGPNMGGKSSYIRQVALITIMAQI----GSF-VPASSATLSIFDSVLTRMGASDSI 87 (222)
T ss_pred EEEEeEEEEecC------CcEEEEECCCCCCHHHHHHHHHHHHHHHhC----CCE-EEcCceEEeccceEEEEecCcccc
Confidence 346677766532 245678889999999999999992 222 221 111111101112222222222222
Q ss_pred CCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHH
Q 042733 105 SPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV-IRMVRNTVD 183 (531)
Q Consensus 105 ~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i-~~~L~~l~~ 183 (531)
...++ +...|-+|++-...-+.+|+++++|||.+|.|+.....+ ...++.+.+
T Consensus 88 ~~~~S--------------------------tF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~ 141 (222)
T cd03287 88 QHGMS--------------------------TFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE 141 (222)
T ss_pred ccccc--------------------------hHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh
Confidence 11111 111355566666666789999999999999997777764 567777777
Q ss_pred c-CCeEEEEecCCch
Q 042733 184 M-GRTVVCTIHQPSI 197 (531)
Q Consensus 184 ~-g~tvi~~~H~~~~ 197 (531)
. +.++|++||+++.
T Consensus 142 ~~~~~~i~~TH~~~l 156 (222)
T cd03287 142 EKKCLVLFVTHYPSL 156 (222)
T ss_pred ccCCeEEEEcccHHH
Confidence 6 8899999999764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.8e-09 Score=102.58 Aligned_cols=120 Identities=8% Similarity=-0.145 Sum_probs=104.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 042733 370 TYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSS 449 (531)
Q Consensus 370 ~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~A~~~~~~ 449 (531)
=-++..|+++|.+.+++..+++.+++.++.|++.+++. ..++.+++..++..++..++|.++++.+++.+.+..+.+.
T Consensus 86 P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~ 163 (236)
T TIGR01247 86 PASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSM 163 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33678999999999999999999999999998877654 3466666666677788899999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhcc
Q 042733 450 FYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFL 491 (531)
Q Consensus 450 ~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~ 491 (531)
+..++..++|.+.|.+.||.|+ |+. ++|++|+.|++-..-.+
T Consensus 164 ~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~ 207 (236)
T TIGR01247 164 LMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAG 207 (236)
T ss_pred HHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhC
Confidence 9999999999999999999999 999 99999999997655444
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.8e-09 Score=109.43 Aligned_cols=162 Identities=20% Similarity=0.210 Sum_probs=105.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCc---eEEEEEEEc------Cccc-------chhhhcceEEEEecCCCCCC---
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGG---YITRNITVS------GYPE-------KQETFARILGYCEQNDIHSP--- 106 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g---~~~G~i~~~------g~~~-------~~~~~~~~igyv~Q~~~~~~--- 106 (531)
.+|-|.+|.||-||||-+|+++|+.++. ...+..+-+ |... .+..++. -.=+|.-..+|
T Consensus 100 g~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~--~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 100 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKA--IIKPQYVDQIPRAV 177 (592)
T ss_pred chhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccC--cCChHHHHHHHHHH
Confidence 4667888999999999999999975431 111110000 0000 0000000 00111111111
Q ss_pred CCcHHhHHH--HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 042733 107 HDTLYDFTH--CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVR 179 (531)
Q Consensus 107 ~ltv~e~~~--~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~ 179 (531)
..+|.+... ..+...+++++.+.|.+..++-+ ||-||.+||++.+++.++.++|||.+-||...+..-...++
T Consensus 178 k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IR 257 (592)
T KOG0063|consen 178 KGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIR 257 (592)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHH
Confidence 123333311 11234566777777776665544 89999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 180 NTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 180 ~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
.+....+=||++.||.+. .-.+.|-+..|.
T Consensus 258 sl~~p~~YiIVVEHDLsV-LDylSDFiCcLY 287 (592)
T KOG0063|consen 258 SLINPDRYIIVVEHDLSV-LDYLSDFICCLY 287 (592)
T ss_pred HhhCCCCeEEEEEeechH-HHhhhcceeEEe
Confidence 998878889999999873 333568888775
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-08 Score=94.91 Aligned_cols=154 Identities=15% Similarity=0.259 Sum_probs=88.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC---CCCc---eEEEEEEEcCcccchh---hhcc--eEEEEecCCCCCCCCcHHhHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGR---KPGG---YITRNITVSGYPEKQE---TFAR--ILGYCEQNDIHSPHDTLYDFTH 115 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~---~~~g---~~~G~i~~~g~~~~~~---~~~~--~igyv~Q~~~~~~~ltv~e~~~ 115 (531)
.|++.+|.||+||||||..|+-. ...| ...|++...+.+.... .+++ ..||-.-- .|+...
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRA------Es~yn~-- 109 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRA------ESFYNV-- 109 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEeh------hHHHHH--
Confidence 58999999999999999999752 2222 1123333322221110 0111 13333221 222221
Q ss_pred HHHHHHHHHHHhc--CCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEec
Q 042733 116 CLYMFIEEGMELV--ELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193 (531)
Q Consensus 116 ~~~~~~~~~l~~l--~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H 193 (531)
...+++..... +...+.+.+-||-= ++|-.-=..+.-+.+||||-++|.|.-+.+++..|+++++.|.-+|++||
T Consensus 110 --as~~De~~~e~~~~~~sLh~~SHGEsf-~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATH 186 (233)
T COG3910 110 --ASYLDEADGEANYGGRSLHHMSHGESF-LAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATH 186 (233)
T ss_pred --HHHHHhhhhhcccCCcchhhhccchHH-HHHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 11233333222 22233333336532 22222235678899999999999999999999999999999999999999
Q ss_pred CCchHHHhccCeEEEEccC
Q 042733 194 QPSIDIFYSFDELFLLKQV 212 (531)
Q Consensus 194 ~~~~~i~~~~d~v~lL~~~ 212 (531)
.|-.- .----.+.-++++
T Consensus 187 SPiLl-AiP~A~I~~~~~~ 204 (233)
T COG3910 187 SPILL-AIPGAEIYEISES 204 (233)
T ss_pred Chhhe-eCCCcEEEEEecC
Confidence 87421 1112355555543
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.4e-08 Score=95.06 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=44.6
Q ss_pred hCCCeEEEeCCCCCC----CHHHHHHHHHHHHHHHHcCCeEEEEecCCchH------HHhccCeEEEEc
Q 042733 152 ANPSIISRDEPISGL----DARAATTVIRMVRNTVDMGRTVVCTIHQPSID------IFYSFDELFLLK 210 (531)
Q Consensus 152 ~~p~lllLDEPtsgL----D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~------i~~~~d~v~lL~ 210 (531)
.+|+++++||||+++ |+...+.+.+.++.++++|.|+++++|+.... +...+|-++.|.
T Consensus 116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 479999999999999 88888999999999988888877766543210 123457777775
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.2e-09 Score=118.65 Aligned_cols=76 Identities=11% Similarity=0.080 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR-MVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
|++|++.|++++ .+|+++++|||++|+|+.....+.. ++..+.+.|.++|++||+++. ....+|+..+.+ +.+.+
T Consensus 394 ~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~~--~~~~~ 469 (782)
T PRK00409 394 HMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVEN--ASVEF 469 (782)
T ss_pred HHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeEE--EEEEE
Confidence 799999999988 8999999999999999999988865 677777779999999999653 223345554443 45555
Q ss_pred c
Q 042733 218 V 218 (531)
Q Consensus 218 ~ 218 (531)
.
T Consensus 470 d 470 (782)
T PRK00409 470 D 470 (782)
T ss_pred e
Confidence 3
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-08 Score=118.89 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=63.2
Q ss_pred HHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 138 FEQRK------RLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 138 ~Gerq------Rv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
.|||+ |+++|++++.+|+++++||||+|||+..+..+.+.|..+++.+.+||++||++. +...||+++.|..
T Consensus 791 ~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~~~~l~~ 868 (880)
T PRK03918 791 GGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADYVIRVSL 868 (880)
T ss_pred HhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCeEEEEEe
Confidence 38999 555666788999999999999999999999999999998777889999999964 5678999999974
|
|
| >TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.8e-08 Score=95.35 Aligned_cols=128 Identities=11% Similarity=0.047 Sum_probs=96.1
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCC--
Q 042733 361 IFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSA-- 438 (531)
Q Consensus 361 v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~-- 438 (531)
.+.|=+..-. ++..|+++|.+..++..+++.+++. +++++.|++..... +..++.+.+....+.+++.+++++++
T Consensus 67 ~l~rl~~~P~-~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 143 (232)
T TIGR00025 67 ALKRLGATPL-PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVAGGT 143 (232)
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5555554444 7899999999988888877765555 55677898865433 33344444555566667777777764
Q ss_pred -CHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhcc
Q 042733 439 -KPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFL 491 (531)
Q Consensus 439 -~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~ 491 (531)
+.+.+..++.+...++.++||.+.|.+.||.|+ |+. ++|++|+.+++-.--.+
T Consensus 144 ~~~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~ 199 (232)
T TIGR00025 144 LQAEIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATV 199 (232)
T ss_pred ccHHHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcC
Confidence 555568889999999999999999999999999 999 99999999987655333
|
This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.9e-08 Score=93.70 Aligned_cols=69 Identities=17% Similarity=0.105 Sum_probs=56.1
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCeEEEEecCCch--------HHHhccCeEEEEcc
Q 042733 143 RLTVAVEFVANPSIISRDEPISGLD---ARAATTVIRMVRNTVDMGRTVVCTIHQPSI--------DIFYSFDELFLLKQ 211 (531)
Q Consensus 143 Rv~iA~aL~~~p~lllLDEPtsgLD---~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~--------~i~~~~d~v~lL~~ 211 (531)
+.........+|+++++|||++.+| ...+..+.+.++.+++.|.|+|+++|+... .+...+|.++.|..
T Consensus 85 ~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 85 QRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred HHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEEE
Confidence 4444555667999999999999999 888888889999988889999999998653 14567899998863
|
A related protein is found in archaea. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-08 Score=91.98 Aligned_cols=59 Identities=17% Similarity=0.154 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHHcCCeEEEEecCCch
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPIS----------GLDARAATTVIRMVRNTVDMGRTVVCTIHQPSI 197 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPts----------gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 197 (531)
++.++...+++...+|+++++||+++ +.|....+.+.++.....+.+.|+|+++|.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 71 ARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 44556778888889999999999994 555555666666666655569999999998754
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.3e-08 Score=94.14 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHHc-CCeEEEEecCCch
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRM-VRNTVDM-GRTVVCTIHQPSI 197 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~-L~~l~~~-g~tvi~~~H~~~~ 197 (531)
.|-+|++-....+.+|+++++|||.+|+|+.....+... ++.+.+. +.++|++||+++.
T Consensus 95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el 155 (218)
T cd03286 95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSL 155 (218)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 355666666666789999999999999999999988887 7777765 8999999999753
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.8e-08 Score=112.96 Aligned_cols=73 Identities=18% Similarity=0.237 Sum_probs=62.0
Q ss_pred cHHHHHHHHH------HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-Hc-C-CeEEEEecCCchHHHhccCeEE
Q 042733 137 LFEQRKRLTV------AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV-DM-G-RTVVCTIHQPSIDIFYSFDELF 207 (531)
Q Consensus 137 ~~GerqRv~i------A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~-~~-g-~tvi~~~H~~~~~i~~~~d~v~ 207 (531)
+.|||+|++| |++++.+|++++|||||+|||+..+..+.+.++... .. | .++|++||++. ....||+++
T Consensus 803 S~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~~d~ii 880 (895)
T PRK01156 803 SGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSVADVAY 880 (895)
T ss_pred CHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHhcCeEE
Confidence 3499999975 589999999999999999999999999999998644 33 3 48999999975 457899999
Q ss_pred EEcc
Q 042733 208 LLKQ 211 (531)
Q Consensus 208 lL~~ 211 (531)
.+..
T Consensus 881 ~~~~ 884 (895)
T PRK01156 881 EVKK 884 (895)
T ss_pred EEEe
Confidence 9974
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.6e-08 Score=92.35 Aligned_cols=122 Identities=17% Similarity=0.197 Sum_probs=73.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l 125 (531)
+++-+..||.||||||+++.|.+..... ..+.+.....+.. .......+++.|...-....
T Consensus 1 ~GlilI~GptGSGKTTll~~ll~~~~~~-~~~~i~t~e~~~E-~~~~~~~~~i~q~~vg~~~~----------------- 61 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAAMIDYINKN-KTHHILTIEDPIE-FVHESKRSLINQREVGLDTL----------------- 61 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhhhc-CCcEEEEEcCCcc-ccccCccceeeecccCCCcc-----------------
Confidence 3567889999999999999998854321 1234444333321 11111223444422100000
Q ss_pred HhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCe
Q 042733 126 ELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 126 ~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~ 205 (531)
.+ .=+++++|..+|+++++|||. |..+...++ +.+..|..++.|+|.++. .+..||
T Consensus 62 ------~~---------~~~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~R 117 (198)
T cd01131 62 ------SF---------ENALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDR 117 (198)
T ss_pred ------CH---------HHHHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhH
Confidence 00 114778899999999999996 655443333 345579999999999863 466788
Q ss_pred EEEEc
Q 042733 206 LFLLK 210 (531)
Q Consensus 206 v~lL~ 210 (531)
++.+.
T Consensus 118 l~~l~ 122 (198)
T cd01131 118 IIDVF 122 (198)
T ss_pred HHhhc
Confidence 76654
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.5e-08 Score=114.89 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=55.9
Q ss_pred cHHHHHHHHHHHHHhh--------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 137 LFEQRKRLTVAVEFVA--------NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 137 ~~GerqRv~iA~aL~~--------~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+.||++|++||++|+. +|++||+||||+|||+.+...+++.|..+++.|+||+++||...
T Consensus 951 SgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~ 1018 (1047)
T PRK10246 951 SGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA 1018 (1047)
T ss_pred CHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH
Confidence 3499999999999996 89999999999999999999999999999888999999999643
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.5e-08 Score=105.66 Aligned_cols=83 Identities=20% Similarity=0.340 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc-----c
Q 042733 139 EQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK-----Q 211 (531)
Q Consensus 139 GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~-----~ 211 (531)
||.||+-+|..+-.+= =+.+||||+.||-+..-.++++.|++|++.|.|+|++.||++ ....+|+++=+- .
T Consensus 485 GEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~ 562 (935)
T COG0178 485 GEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAADHIIDIGPGAGEH 562 (935)
T ss_pred hHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcC
Confidence 8999999999987653 357999999999999999999999999999999999999964 678899998763 4
Q ss_pred CceeeecCCCCC
Q 042733 212 VGQEISVGPLGP 223 (531)
Q Consensus 212 ~G~~v~~G~~~~ 223 (531)
||++++.|++++
T Consensus 563 GGeIv~~Gtp~~ 574 (935)
T COG0178 563 GGEIVAEGTPEE 574 (935)
T ss_pred CCEEEEccCHHH
Confidence 789999999864
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.9e-07 Score=95.31 Aligned_cols=154 Identities=19% Similarity=0.166 Sum_probs=93.4
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc-----------hhhhcceEEEEecCCCCCCCCcHHhHHHHH
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-----------QETFARILGYCEQNDIHSPHDTLYDFTHCL 117 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-----------~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~ 117 (531)
.+.++++|+|||||+++|+|..+. ..|.+.+.|.... ...+++.+.++.+.+... .. +......
T Consensus 161 i~I~G~sG~GKStLl~~I~~~~~~--~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~-~~--r~~~~~~ 235 (438)
T PRK07721 161 VGIFAGSGVGKSTLMGMIARNTSA--DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPA-LM--RIKGAYT 235 (438)
T ss_pred EEEECCCCCCHHHHHHHHhcccCC--CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCH-HH--HHHHHHH
Confidence 344455599999999999997654 3577777554321 122567788888754321 00 1100111
Q ss_pred HHHHHHHHHhcCCch--hhhccH--HHHHH-HHHHHHHhhCCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHH--cCC--
Q 042733 118 YMFIEEGMELVELNP--FRQALF--EQRKR-LTVAVEFVANPSIISRDEP--ISGLDARAATTVIRMVRNTVD--MGR-- 186 (531)
Q Consensus 118 ~~~~~~~l~~l~l~~--~~~~~~--GerqR-v~iA~aL~~~p~lllLDEP--tsgLD~~~~~~i~~~L~~l~~--~g~-- 186 (531)
...+.|....-|.+- ..|..- -+-+| ++++ +.|| |+|+||.....+.++++++.+ +|.
T Consensus 236 a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~-----------~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT 304 (438)
T PRK07721 236 ATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLA-----------VGEPPTTKGYTPSVFAILPKLLERTGTNASGSIT 304 (438)
T ss_pred HHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHh-----------cCCCCccccCCHHHHHHHHHHHHHhcCCCCCCee
Confidence 111222222222110 001100 12222 2222 2454 789999999999999999874 575
Q ss_pred ---eEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 187 ---TVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 187 ---tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||++.+||.+. ..||++..+.+ |+++..+...
T Consensus 305 ~~~TVlv~~hdm~e---~i~d~v~~i~d-G~Ivls~~la 339 (438)
T PRK07721 305 AFYTVLVDGDDMNE---PIADTVRGILD-GHFVLDRQLA 339 (438)
T ss_pred eEEEEEEECCCCCc---hhhhhEEEecC-EEEEEeccHH
Confidence 99999999873 67999999996 9999998753
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=96.16 Aligned_cols=132 Identities=17% Similarity=0.095 Sum_probs=82.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCC-CCCCCcHHhHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDI-HSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~-~~~~ltv~e~~~~~~~~~~~~l 125 (531)
..-+..||+|||||||+++|++..+.. .+.+.+.....-....+..+.+..+... -....+.
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~--~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~--------------- 207 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKD--ERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTP--------------- 207 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCcc--ccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCH---------------
Confidence 356778899999999999999976532 3445554321100011233333332210 0001111
Q ss_pred HhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCe
Q 042733 126 ELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 126 ~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~ 205 (531)
.-.++.+|-.+|+++++|||.+ .+.++.++.+...+.+++.|+|..+ ..+..||
T Consensus 208 -----------------~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~R 261 (308)
T TIGR02788 208 -----------------KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGS--PEEAFEQ 261 (308)
T ss_pred -----------------HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCC--HHHHHHH
Confidence 1235567888999999999996 3456677766543446799999987 4556899
Q ss_pred EEEEccCceeeecCCCC
Q 042733 206 LFLLKQVGQEISVGPLG 222 (531)
Q Consensus 206 v~lL~~~G~~v~~G~~~ 222 (531)
+..+.. |++...|.+.
T Consensus 262 l~~l~~-~~~~~~g~~~ 277 (308)
T TIGR02788 262 LALMVK-SSQAGLGLDF 277 (308)
T ss_pred HHHHhh-ccccccCCCH
Confidence 998875 7787777653
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-08 Score=94.56 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEP--ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI 216 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEP--tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v 216 (531)
+++.+..+++..+.+|+++++||| +.++|+. +.+.+.++.+.|.++|+++|+. .+...+|++..+.+ |++.
T Consensus 82 le~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~-~~i~ 154 (174)
T PRK13695 82 LERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG-GRVY 154 (174)
T ss_pred HHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC-cEEE
Confidence 688888888888899999999995 4455533 4566666666789999999984 34567899999986 8887
Q ss_pred ecC
Q 042733 217 SVG 219 (531)
Q Consensus 217 ~~G 219 (531)
..-
T Consensus 155 ~~~ 157 (174)
T PRK13695 155 ELT 157 (174)
T ss_pred EEc
Confidence 663
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=98.61 E-value=7e-08 Score=95.65 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH-HHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 141 RKRLTVAVEFVANPSIISRDEPISGLDARAATT-VIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 141 rqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~-i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
+||+++|+++..+++|.+| ||+.+|+.+... ++ +..+...+.|.|+.+|+.. ....+|.|.+|+. |+.
T Consensus 143 ~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~paI~vl~s-~sr 211 (249)
T cd01128 143 KRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFPAIDILKS-GTR 211 (249)
T ss_pred HHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCCeEEEcCC-CCc
Confidence 9999999999999999999 999999655543 44 4555546789999999865 3567999999986 775
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.8e-07 Score=88.14 Aligned_cols=117 Identities=9% Similarity=-0.140 Sum_probs=93.6
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042733 371 YSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSF 450 (531)
Q Consensus 371 Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~A~~~~~~~ 450 (531)
.++..+.+++.+..+-..+++.+++.++.+. .|.+.....++.....+++..++..++|.++++++++.+.+..+.+++
T Consensus 99 ~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~~ 177 (253)
T TIGR03861 99 LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGLALSNLIRQLENFAGVMNFV 177 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3777899999999988777776665544433 377665555555555556677788899999999999999999999999
Q ss_pred HHHHHHhcccccCCCCC---CceE-EEE-ecchHHHHHHHHHh
Q 042733 451 YTIWNLFPGFVIPRPFV---DNGE-FQY-GADGLLGISGILDL 488 (531)
Q Consensus 451 ~~~~~lf~Gf~i~~~~i---p~~~-W~~-isp~~y~~~~l~~n 488 (531)
+.+++..+|.+.|.+.+ |.|+ |+. +||+.|..|++=..
T Consensus 178 ~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~ 220 (253)
T TIGR03861 178 IFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA 220 (253)
T ss_pred HHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH
Confidence 99999999999998766 7788 998 99999999987543
|
Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.7e-08 Score=116.87 Aligned_cols=66 Identities=21% Similarity=0.266 Sum_probs=57.0
Q ss_pred ccHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCeEEEEecCCchHHHhc
Q 042733 136 ALFEQRK------RLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-----MGRTVVCTIHQPSIDIFYS 202 (531)
Q Consensus 136 ~~~Gerq------Rv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tvi~~~H~~~~~i~~~ 202 (531)
.+.|||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. .|.+||++||++. .+..+
T Consensus 1200 lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~ 1276 (1311)
T TIGR00606 1200 CSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELL 1276 (1311)
T ss_pred CchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHH
Confidence 3449999 99999999999999999999999999999999999988732 3789999999976 34444
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-07 Score=91.70 Aligned_cols=131 Identities=22% Similarity=0.280 Sum_probs=77.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcC--cccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSG--YPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEG 124 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g--~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~ 124 (531)
.++..++|+|+|||||+-.++=....|. .+.| ... .-...+-|+.-++. ......++..+
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~-----~~~g~~~~~---~~~~~Vlyi~~Ed~----------~~~i~~Rl~~i 63 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGK-----NLFGGGLKV---TEPGRVVYLSAEDP----------REEIHRRLEAI 63 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCc-----cccCCcccc---CCCceEEEEECCCC----------HHHHHHHHHHH
Confidence 4688999999999999988864221110 0111 110 01223445443321 11223344444
Q ss_pred HHhcCCchhhhccH---HHHHHHHHHH----------------HHhhCCCeEEEeCCCC------CCCHHHHHHHHHHHH
Q 042733 125 MELVELNPFRQALF---EQRKRLTVAV----------------EFVANPSIISRDEPIS------GLDARAATTVIRMVR 179 (531)
Q Consensus 125 l~~l~l~~~~~~~~---GerqRv~iA~----------------aL~~~p~lllLDEPts------gLD~~~~~~i~~~L~ 179 (531)
...+++.+..++.. |+.|++.+++ ....+|+++++| |++ .+|+.....+++.|+
T Consensus 64 ~~~~~~~~~~~rl~~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~ 142 (239)
T cd01125 64 LQHLEPDDAGDRLFIDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALR 142 (239)
T ss_pred HhhcCCcCcccceEEeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHH
Confidence 44444333222221 4444444332 335799999999 765 479999999999999
Q ss_pred HHHHc-CCeEEEEecCCc
Q 042733 180 NTVDM-GRTVVCTIHQPS 196 (531)
Q Consensus 180 ~l~~~-g~tvi~~~H~~~ 196 (531)
+++++ |.+|++++|...
T Consensus 143 ~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 143 RIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHHHHhCCEEEEEeccCc
Confidence 98865 999999999753
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >TIGR01291 nodJ ABC-2 type transporter, NodJ family | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.8e-07 Score=90.15 Aligned_cols=118 Identities=13% Similarity=0.028 Sum_probs=95.4
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 042733 372 SAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSFY 451 (531)
Q Consensus 372 ~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~A~~~~~~~~ 451 (531)
++..+.+||.+.+.-..+++.++...+.++ .|..+. ...+..+.++++..++..++|.++++++++.+.+..+..++.
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~~~~~~~~~~~i~~~i~ 177 (253)
T TIGR01291 100 TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVAALAPSYAYFAFYQSLVI 177 (253)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 677899999999877777776665555443 455443 345555556666778888999999999999999999999999
Q ss_pred HHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhcc
Q 042733 452 TIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFL 491 (531)
Q Consensus 452 ~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~ 491 (531)
.+++.++|.+.|.+.||.|+ |+. ++|+.|+.|++=..-++
T Consensus 178 ~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g 219 (253)
T TIGR01291 178 TPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLG 219 (253)
T ss_pred HHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhC
Confidence 99999999999999999999 888 99999999997655444
|
Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins. |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-07 Score=96.80 Aligned_cols=72 Identities=22% Similarity=0.337 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhcc--CeEE
Q 042733 139 EQRKRLTVAVEFV---------ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSF--DELF 207 (531)
Q Consensus 139 GerqRv~iA~aL~---------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~--d~v~ 207 (531)
||||++.+|+.|+ .+|++++||||+++||+..+..+++.+.++ +..+++++|++. .+...+ +++.
T Consensus 277 Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~~~~~i~ 352 (361)
T PRK00064 277 GQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLLENAKIF 352 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhhccCcEE
Confidence 8999999999886 799999999999999999999999988754 457899999865 333443 4788
Q ss_pred EEccCcee
Q 042733 208 LLKQVGQE 215 (531)
Q Consensus 208 lL~~~G~~ 215 (531)
.+.+ |++
T Consensus 353 ~v~~-G~i 359 (361)
T PRK00064 353 HVEQ-GKI 359 (361)
T ss_pred EEeC-CEE
Confidence 8875 775
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-07 Score=113.00 Aligned_cols=70 Identities=13% Similarity=0.174 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 139 EQRKRLTVAVEFV----ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 139 GerqRv~iA~aL~----~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
|||+|++||++++ .+|++++|||||+|||+..+..+.++|+.+++ +.++|++||++.. ...||+++.+..
T Consensus 1093 g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~~~~~ 1166 (1179)
T TIGR02168 1093 GEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLYGVTM 1166 (1179)
T ss_pred cHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHeeeee
Confidence 9999999999985 67799999999999999999999999999865 4789999999763 567999987653
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR01248 drrC daunorubicin resistance protein C | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-06 Score=79.31 Aligned_cols=128 Identities=10% Similarity=-0.057 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChh--HHHHHHHHHHHHHHHHHHHHHHH
Q 042733 356 AVEWTIFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAA--MFFWYLLLMLFIFFYFTFYGMMA 433 (531)
Q Consensus 356 ~~er~v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~--~f~~f~l~~~l~~~~~~~~~~~i 433 (531)
..|+-.+.|-+..-. +++.|+++|.+...-..+++.++..++.++ .|.+...+ .++.++++..+.......++..+
T Consensus 15 dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~ 92 (152)
T TIGR01248 15 DREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAM 92 (152)
T ss_pred HHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777766 799999999999999998888877777754 48887632 23333333344455556666666
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHH
Q 042733 434 EALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGIL 486 (531)
Q Consensus 434 ~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~ 486 (531)
+...++.+..+ ...++..++.+.+|.+.|.++||.|+ |+- ++|++|+.+++=
T Consensus 93 a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 93 ALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 65566665444 45777788888999999999999999 998 999999999873
|
The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.3e-07 Score=103.33 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=61.7
Q ss_pred HHHHH------HHHHHHHHhhC-----C-CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-eEEEEecCCchHHHhccC
Q 042733 138 FEQRK------RLTVAVEFVAN-----P-SIISRDEPISGLDARAATTVIRMVRNTVDMGR-TVVCTIHQPSIDIFYSFD 204 (531)
Q Consensus 138 ~Gerq------Rv~iA~aL~~~-----p-~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~-tvi~~~H~~~~~i~~~~d 204 (531)
.|||+ |+++|++++.+ | +++++||||++||+.....+.+.|+.+.+.|. +||++||++. ....+|
T Consensus 784 ~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~~~~ad 861 (880)
T PRK02224 784 GGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--LVGAAD 861 (880)
T ss_pred ccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--HHHhcC
Confidence 38999 89999998864 3 67999999999999999999999999876664 7999999986 346799
Q ss_pred eEEEEcc
Q 042733 205 ELFLLKQ 211 (531)
Q Consensus 205 ~v~lL~~ 211 (531)
+++.+..
T Consensus 862 ~~~~~~~ 868 (880)
T PRK02224 862 DLVRVEK 868 (880)
T ss_pred eeEEeec
Confidence 9999964
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.1e-07 Score=93.54 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhh---------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 139 EQRKRLTVAVEFVA---------NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 139 GerqRv~iA~aL~~---------~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
||||++.||..|+. +|+|++||||+++||+..+..+++.|++. |.+|++|+|+++
T Consensus 279 Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 279 GQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 89999999999999 99999999999999999999999999753 679999999865
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.3e-06 Score=83.04 Aligned_cols=72 Identities=22% Similarity=0.307 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhh--CCCeEEEeCCCCC---CCHHHHHHHHHHHHHHHHcCCeEEEEecCCchH------HHhccCeEE
Q 042733 139 EQRKRLTVAVEFVA--NPSIISRDEPISG---LDARAATTVIRMVRNTVDMGRTVVCTIHQPSID------IFYSFDELF 207 (531)
Q Consensus 139 GerqRv~iA~aL~~--~p~lllLDEPtsg---LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~------i~~~~d~v~ 207 (531)
++++.+.....++. +|+++++||||+. +|.....++++.++.++++|.|+++++|+.... +...+|-++
T Consensus 104 ~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI 183 (234)
T PRK06067 104 LANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYL 183 (234)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEE
Confidence 66788888888887 9999999999964 555555566666777777799999999986521 344567777
Q ss_pred EEc
Q 042733 208 LLK 210 (531)
Q Consensus 208 lL~ 210 (531)
.|.
T Consensus 184 ~L~ 186 (234)
T PRK06067 184 KLR 186 (234)
T ss_pred EEE
Confidence 665
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-06 Score=105.22 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 139 EQRKRLTVAVEFVA----NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 139 GerqRv~iA~aL~~----~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
|||++++||++++. +|++++||||++|||+..+..+.++|+++++ +.++|++||++. ....||+++.+..
T Consensus 1078 ge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1078 GEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIGVTM 1151 (1164)
T ss_pred chHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEeEEE
Confidence 89999999999985 7899999999999999999999999998865 477999999974 5688999988764
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.6e-06 Score=88.91 Aligned_cols=70 Identities=11% Similarity=0.228 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 139 EQRKRLTVAVEFV---------ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 139 GerqRv~iA~aL~---------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
||||++.+|..|+ .+|++++||||+++||+..+..+.+.|... ..++|.+++.+ ..+|+++.+
T Consensus 267 Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~~~~~~ 338 (349)
T PRK14079 267 GEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAALTLRI 338 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCceEEEE
Confidence 8999999999999 899999999999999999999999888643 23555555543 468999999
Q ss_pred ccCceeee
Q 042733 210 KQVGQEIS 217 (531)
Q Consensus 210 ~~~G~~v~ 217 (531)
.+ |++.-
T Consensus 339 ~~-~~~~~ 345 (349)
T PRK14079 339 EA-GVFTP 345 (349)
T ss_pred ec-cEecC
Confidence 86 77643
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.2e-05 Score=83.67 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=72.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l 125 (531)
+++-+..||.||||||++++|.+..+.. ..+.+.....+... ......+.+.|.+.-....+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~-~~~~i~tiEdp~E~-~~~~~~~~i~q~evg~~~~~---------------- 183 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKN-AAGHIITIEDPIEY-VHRNKRSLINQREVGLDTLS---------------- 183 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcC-CCCEEEEEcCChhh-hccCccceEEccccCCCCcC----------------
Confidence 3677888999999999999999853311 12344444333211 11111122222211000000
Q ss_pred HhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCe
Q 042733 126 ELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 126 ~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~ 205 (531)
-.-+++++|-.+|+++++||+. |+.+....++ .+..|.+|+.|+|-.+. ....+|
T Consensus 184 ----------------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~--~~~~~R 238 (343)
T TIGR01420 184 ----------------FANALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSA--AQTIER 238 (343)
T ss_pred ----------------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCH--HHHHHH
Confidence 0123667888999999999997 8888765444 34569999999998663 455677
Q ss_pred EEEE
Q 042733 206 LFLL 209 (531)
Q Consensus 206 v~lL 209 (531)
++-+
T Consensus 239 l~~~ 242 (343)
T TIGR01420 239 IIDV 242 (343)
T ss_pred HHHh
Confidence 6544
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.4e-05 Score=66.22 Aligned_cols=55 Identities=27% Similarity=0.299 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH------HHHHHHHcCCeEEEEec
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR------MVRNTVDMGRTVVCTIH 193 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~------~L~~l~~~g~tvi~~~H 193 (531)
++..+..++++--.+|+++++||+..-.+......... ........+..+|+++|
T Consensus 64 ~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 34555666666666689999999999999988877664 12222334778888888
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.7e-06 Score=72.97 Aligned_cols=68 Identities=19% Similarity=0.089 Sum_probs=48.0
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEEEEecCCCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGYCEQNDIHS 105 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~igyv~Q~~~~~ 105 (531)
.++++++.... .++...+||+|||||||++++. +|++.++|.+... ...++..++++|+ .
T Consensus 4 aL~~vsl~i~~------ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~---l 66 (107)
T cd00820 4 SLHGVLVDVYG------KVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL---G 66 (107)
T ss_pred EEEeeEEEEcC------CEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh---c
Confidence 56777777642 2456788888999999999997 3567888876532 3355667888877 3
Q ss_pred CCCcHHhH
Q 042733 106 PHDTLYDF 113 (531)
Q Consensus 106 ~~ltv~e~ 113 (531)
...|++|+
T Consensus 67 f~~ti~~N 74 (107)
T cd00820 67 LEIRLRLN 74 (107)
T ss_pred chhhHHhh
Confidence 44677765
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK15066 inner membrane transport permease; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.9e-05 Score=78.82 Aligned_cols=118 Identities=8% Similarity=-0.052 Sum_probs=88.6
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 042733 371 YSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAEALSAKPQIAIIVSSSF 450 (531)
Q Consensus 371 Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~A~~~~~~~ 450 (531)
.++..+.+++.+...-..++..++..++.+...|.+.. ....++..+++...+....|.+++.+.++.+.+..+.+++
T Consensus 101 ~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~ 178 (257)
T PRK15066 101 VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFV 178 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 47778999999987766666655555555544466543 2333333434444444456888999999999999999999
Q ss_pred HHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhc
Q 042733 451 YTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDF 490 (531)
Q Consensus 451 ~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef 490 (531)
+.+++..+|.+.|.+.+|.|+ |+. +||+.|..|++=..-+
T Consensus 179 ~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~ 220 (257)
T PRK15066 179 LTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFL 220 (257)
T ss_pred HHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHc
Confidence 999999999999999999999 998 9999999998754433
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=78.07 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 139 EQRKRLTVAVEFVANP---SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 139 GerqRv~iA~aL~~~p---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
|+||.+.++..+...+ .++++|||-++|+|..++.+++.|++..+.+.-+|+|||.|.
T Consensus 240 G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 240 GEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp HHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred HHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 9999999999888777 899999999999999999999999887766788999999875
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.03 E-value=8e-06 Score=86.71 Aligned_cols=134 Identities=18% Similarity=0.156 Sum_probs=84.9
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhc
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELV 128 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l 128 (531)
-+.++++|+|||||+++|+|..+. ..|.+...|... .+|.|. +++.+..-
T Consensus 159 i~I~G~sG~GKTtLl~~Ia~~~~~--~~gvI~~iGerg---------------------~ev~e~-------~~~~l~~~ 208 (432)
T PRK06793 159 IGIFAGSGVGKSTLLGMIAKNAKA--DINVISLVGERG---------------------REVKDF-------IRKELGEE 208 (432)
T ss_pred EEEECCCCCChHHHHHHHhccCCC--CeEEEEeCCCCc---------------------ccHHHH-------HHHHhhhc
Confidence 355556699999999999997653 234444444321 122222 11111111
Q ss_pred CC------chhhhccHHHHHHHHHHHHHh-------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 129 EL------NPFRQALFEQRKRLTVAVEFV-------ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 129 ~l------~~~~~~~~GerqRv~iA~aL~-------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
++ ....+...++|+|++.+.+.+ .++-++++|+||++.|+. +++-..+.+....|.+..+.+|.+
T Consensus 209 gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~ 286 (432)
T PRK06793 209 GMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK 286 (432)
T ss_pred ccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch
Confidence 11 233555669999999998888 789999999999999996 566556666554588888888842
Q ss_pred chHHHhccCeEEEEccCceeeecCC
Q 042733 196 SIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 196 ~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
.+++ |.-... +|.+...++
T Consensus 287 --~L~E---Rag~~~-~GSiT~~~t 305 (432)
T PRK06793 287 --KLLE---RSGKTQ-KGSITGIYT 305 (432)
T ss_pred --hHHH---HhccCC-CcceEEEEE
Confidence 3444 333344 477765543
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.4e-05 Score=91.75 Aligned_cols=73 Identities=18% Similarity=0.281 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHh------hC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 139 EQRKRLTVAVEFV------AN--PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 139 GerqRv~iA~aL~------~~--p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
||+-.++||.+|+ .+ =++|||||||..||+.....+++.|..+...+.+|+++||++ ++.+.+|.++.+.
T Consensus 819 GE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~~~~i~V~ 896 (908)
T COG0419 819 GERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERADVRIRVK 896 (908)
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhCCeEEEEE
Confidence 8887777766655 56 699999999999999999999999999988899999999985 4678899999987
Q ss_pred cCc
Q 042733 211 QVG 213 (531)
Q Consensus 211 ~~G 213 (531)
..|
T Consensus 897 k~~ 899 (908)
T COG0419 897 KDG 899 (908)
T ss_pred ecC
Confidence 533
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.94 E-value=9e-05 Score=70.28 Aligned_cols=117 Identities=22% Similarity=0.181 Sum_probs=70.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCC--CCCCCcHHhHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDI--HSPHDTLYDFTHCLYMFIEEG 124 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~--~~~~ltv~e~~~~~~~~~~~~ 124 (531)
..-+.+||+|||||||+++|+|..++ ..|.+.+.+........+..++++.|.+. ..+..+..+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~--~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 91 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPP--DERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD------------ 91 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH------------
Confidence 45688999999999999999997653 34667776543211122345666655432 222233221
Q ss_pred HHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCe-EEEEecCCchHHHhcc
Q 042733 125 MELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRT-VVCTIHQPSIDIFYSF 203 (531)
Q Consensus 125 l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~t-vi~~~H~~~~~i~~~~ 203 (531)
.+..++-.+|+.++++|--. +.+ .+.++. +..|.. ++.|.|-.+ ..+..
T Consensus 92 --------------------~l~~~lR~~pd~i~igEir~---~ea----~~~~~a-~~tGh~g~~~T~Ha~s--~~~~~ 141 (186)
T cd01130 92 --------------------LLRSALRMRPDRIIVGEVRG---GEA----LDLLQA-MNTGHPGGMTTIHANS--AEEAL 141 (186)
T ss_pred --------------------HHHHHhccCCCEEEEEccCc---HHH----HHHHHH-HhcCCCCceeeecCCC--HHHHH
Confidence 12334557899999999974 332 233433 356776 899999765 34444
Q ss_pred CeEE
Q 042733 204 DELF 207 (531)
Q Consensus 204 d~v~ 207 (531)
+|+.
T Consensus 142 ~Rl~ 145 (186)
T cd01130 142 TRLE 145 (186)
T ss_pred HHHH
Confidence 5543
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.4e-05 Score=75.23 Aligned_cols=118 Identities=13% Similarity=0.019 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhheecccccccChhHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHH
Q 042733 374 MPYALRKNKFRASNSNTCKLSCNLSFYAMIGFEWTAAMFFWYLLLMLFIFFYFTFYGMMAE-ALSAKPQIAIIVSSSFYT 452 (531)
Q Consensus 374 ~~y~la~~l~elP~~~~~~~~f~~i~Y~~~Gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~-~~~~~~~~A~~~~~~~~~ 452 (531)
..+++++.+...-...+...+...++.+..|. .....++.++..+.+......++|.+++ .+.++.+.+..++.++..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 209 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL 209 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56677777777666666666666666677773 3445566666677777777888888666 377888899999999999
Q ss_pred HHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhccC
Q 042733 453 IWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDFLH 492 (531)
Q Consensus 453 ~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef~~ 492 (531)
++..++|.+.|.+.+|.|+ |+. ++|..|+.+++-.....+
T Consensus 210 ~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~ 251 (286)
T COG0842 210 PLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGG 251 (286)
T ss_pred HHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCC
Confidence 9999999999999999988 998 999999999987766653
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.4e-06 Score=93.04 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=47.0
Q ss_pred HHHHHHHHH--HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchH-------H-HhccCeEEE
Q 042733 139 EQRKRLTVA--VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSID-------I-FYSFDELFL 208 (531)
Q Consensus 139 GerqRv~iA--~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~-------i-~~~~d~v~l 208 (531)
|++|||.|+ .++..+|+.. ...++.+.++++.+++.|.|+|+++|+++.. + ...+|.|+.
T Consensus 119 g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~ 188 (484)
T TIGR02655 119 YKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVI 188 (484)
T ss_pred hCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEE
Confidence 788888888 5665555433 4677889999999988899999999986421 1 346899998
Q ss_pred Ec
Q 042733 209 LK 210 (531)
Q Consensus 209 L~ 210 (531)
|+
T Consensus 189 L~ 190 (484)
T TIGR02655 189 LR 190 (484)
T ss_pred EE
Confidence 86
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=7e-05 Score=86.56 Aligned_cols=69 Identities=19% Similarity=0.098 Sum_probs=59.0
Q ss_pred HhhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHH---------hccCeEEEEccCceeeecC
Q 042733 150 FVANPSIISRDEPISGL-DARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIF---------YSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 150 L~~~p~lllLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~---------~~~d~v~lL~~~G~~v~~G 219 (531)
+..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++. +. +.||++++|.+ |++...|
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d-~~~s~~a~~i~~~~~t~i~L~n-~~a~~~~ 726 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISD-AERSGIIDVLKESCPTKICLPN-GAAREPG 726 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhcCchHHHHHhcCCeEEECCC-ccccccc
Confidence 46899999999999999 7999999999999998889999999999863 33 57999999975 7776555
Q ss_pred C
Q 042733 220 P 220 (531)
Q Consensus 220 ~ 220 (531)
+
T Consensus 727 ~ 727 (818)
T PRK13830 727 T 727 (818)
T ss_pred h
Confidence 3
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00016 Score=86.95 Aligned_cols=138 Identities=17% Similarity=0.226 Sum_probs=68.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
.+-+.+|+||+|||||++++.+.... ...|.+.+++...... ... +-.++... ....+ ....+...++++
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~--~~~--~~~~~~~~-~~~~~----~l~~~~l~~il~ 277 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKS--MEI--YSSANPDD-YNMKL----HLQRAFLSEILD 277 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccc--hhh--cccccccc-cchhH----HHHHHHHHHHhC
Confidence 35688999999999999999875432 2356777754221110 000 11111000 00111 111223444444
Q ss_pred hcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH---HcCCeEEEEecCCchHHHhcc
Q 042733 127 LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV---DMGRTVVCTIHQPSIDIFYSF 203 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~---~~g~tvi~~~H~~~~~i~~~~ 203 (531)
..++.. ....+.|+| |..++-+|+||+- |.. ..++.++... ..|.+||+|||+.......-+
T Consensus 278 ~~~~~~--~~~~~~~~~------L~~krvLLVLDdv----~~~---~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~ 342 (1153)
T PLN03210 278 KKDIKI--YHLGAMEER------LKHRKVLIFIDDL----DDQ---DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGI 342 (1153)
T ss_pred CCCccc--CCHHHHHHH------HhCCeEEEEEeCC----CCH---HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCC
Confidence 444321 111234444 3355557789984 333 3344454432 358899999998653111225
Q ss_pred CeEEEE
Q 042733 204 DELFLL 209 (531)
Q Consensus 204 d~v~lL 209 (531)
|+++-+
T Consensus 343 ~~~~~v 348 (1153)
T PLN03210 343 DHIYEV 348 (1153)
T ss_pred CeEEEe
Confidence 665544
|
syringae 6; Provisional |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0002 Score=82.98 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCe
Q 042733 140 QRKRLTVAVEFVANPSIISRDEP---ISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 140 erqRv~iA~aL~~~p~lllLDEP---tsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~ 205 (531)
|.++++-+..-+++++++++||| |+.+|..+ ..+..++.+.+. |.+++++||.. ++.+++++
T Consensus 673 E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 673 EMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred HHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 44444444444569999999999 88899444 355566666665 58899999984 45555553
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=97.62 E-value=8.4e-05 Score=90.15 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=47.8
Q ss_pred HHHHHHH----HHHH--------HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 139 EQRKRLT----VAVE--------FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 139 GerqRv~----iA~a--------L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
|||||++ +|++ +..+|++++|||||+|||+.++..+++++.++ |.++|++||..
T Consensus 1251 Gek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1251 GERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 9999996 5644 55899999999999999999999999999887 78899999863
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=1.7e-05 Score=80.84 Aligned_cols=128 Identities=20% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHH--HHHHhcCCCCCCchHHHHHHHHHHHHHHHHhhhhhhhheecccc---cccChhHHHHHHHHHHHHHHHHHHHHH
Q 042733 357 VEWT--IFYRESALGTYSAMPYALRKNKFRASNSNTCKLSCNLSFYAMIG---FEWTAAMFFWYLLLMLFIFFYFTFYGM 431 (531)
Q Consensus 357 ~er~--v~~rE~~~~~Y~~~~y~la~~l~elP~~~~~~~~f~~i~Y~~~G---l~~~~~~f~~f~l~~~l~~~~~~~~~~ 431 (531)
.||. +..|-+..|. ++..|++++.+..+...++..+++.++ +.| +... +++..++.+++..++..+++.
T Consensus 184 ~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~ 257 (344)
T PF12698_consen 184 EEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFISFGF 257 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHHHHH
Confidence 4544 4555555664 889999999999999998888777664 344 4443 666667778888899999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcccccCCCCCCceE-EEE-ecchHHHHHHHHHhhc
Q 042733 432 MAEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGE-FQY-GADGLLGISGILDLDF 490 (531)
Q Consensus 432 ~i~~~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~-W~~-isp~~y~~~~l~~nef 490 (531)
+++.++++...|..+++++..+.+.++|.+.+.+++|.++ |+. +.|..|..+++...-+
T Consensus 258 ~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~~~~ 318 (344)
T PF12698_consen 258 LISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLRNIIY 318 (344)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999988888886777777777888999999 888 9999998888755443
|
|
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0011 Score=65.30 Aligned_cols=57 Identities=18% Similarity=0.238 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHH-cCCeEEEEecCCc
Q 042733 140 QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR-MVRNTVD-MGRTVVCTIHQPS 196 (531)
Q Consensus 140 erqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~-~L~~l~~-~g~tvi~~~H~~~ 196 (531)
|-+|++=...-+.+..++++||+..|=++.....+.. .++.+.+ .+..++++||..+
T Consensus 109 E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 109 EMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE 167 (235)
T ss_dssp HHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG
T ss_pred hHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch
Confidence 3444444444456778999999999999998887655 4566776 4888999999875
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00011 Score=69.83 Aligned_cols=71 Identities=7% Similarity=0.003 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCch-HHHhccCeEEEEcc
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSI-DIFYSFDELFLLKQ 211 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~-~i~~~~d~v~lL~~ 211 (531)
|+-.|..||..+..+|+.+..+| +.+||...+++.+.+++..++|.+|++.+|.+.. .....||.++++..
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~ 132 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDV 132 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEEC
Confidence 78899999999999999988777 8999999999999998876567899999997632 24567899988864
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=97.49 E-value=8.5e-05 Score=72.64 Aligned_cols=58 Identities=10% Similarity=-0.019 Sum_probs=35.2
Q ss_pred CCCeEEEeCCCCCC--CHHHHHHHHHHHHH-HHHcCCeEEEEecCCch-------HHHhccCeEEEEc
Q 042733 153 NPSIISRDEPISGL--DARAATTVIRMVRN-TVDMGRTVVCTIHQPSI-------DIFYSFDELFLLK 210 (531)
Q Consensus 153 ~p~lllLDEPtsgL--D~~~~~~i~~~L~~-l~~~g~tvi~~~H~~~~-------~i~~~~d~v~lL~ 210 (531)
+|+++++|.++.=+ ++...+++...|++ +++.|.|+|+++|.... .+..++|-|+.|.
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 45666666665422 33334455444544 45569999999995431 2344678888885
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=58.39 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCeEEEEecCCc
Q 042733 142 KRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-----MGRTVVCTIHQPS 196 (531)
Q Consensus 142 qRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tvi~~~H~~~ 196 (531)
+..........++.++++||.-.. ++.....+.+.+..... .+.++|++++...
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 445556666788999999998765 56666777777777643 4678888888643
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00015 Score=69.24 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.7
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..||+|||||||.++|++..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999975
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00054 Score=73.98 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.|-+.+||+|+||||++..|++..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHH
Confidence 588999999999999999999853
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00095 Score=73.89 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=47.3
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEec---------------CCchHHHhccCeEEEEccCce
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH---------------QPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------------~~~~~i~~~~d~v~lL~~~G~ 214 (531)
|..+|+++++||.-..-| ++.+..++..|..++.|.| +++ .+...+|+++.+++ |+
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg-~i~~iID~IV~I~~-G~ 391 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELG-MIPQIVDTVIFIED-GE 391 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhc-hHHHhhcEEEEEeC-CE
Confidence 678999999999985322 4444455556788999999 655 45668999999996 99
Q ss_pred e--eecCCC
Q 042733 215 E--ISVGPL 221 (531)
Q Consensus 215 ~--v~~G~~ 221 (531)
+ +|.+..
T Consensus 392 I~~v~~~~~ 400 (602)
T PRK13764 392 VSKVYDLEF 400 (602)
T ss_pred EEEEEeeee
Confidence 8 676653
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00094 Score=71.95 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=49.8
Q ss_pred hCCCeEEEeCCCCCCCHH-HHHHHHHHHHHHHHcCCeEEEEe-cCCchHHHhccCeEE-EEccCceeeecCCCCC
Q 042733 152 ANPSIISRDEPISGLDAR-AATTVIRMVRNTVDMGRTVVCTI-HQPSIDIFYSFDELF-LLKQVGQEISVGPLGP 223 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~-~~~~i~~~L~~l~~~g~tvi~~~-H~~~~~i~~~~d~v~-lL~~~G~~v~~G~~~~ 223 (531)
.++++|++|||...+|.. ++..+.+.+..+.+.|+.+|+++ |+|. ++..+.|++. -+. .|-++...+|+.
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~-~l~~l~~rL~SR~~-~gl~v~i~~pd~ 265 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ-KLSEFQDRLVSRFQ-MGLVAKLEPPDE 265 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHH-HHHHHHHHHhhHHh-cCceEeeCCCCH
Confidence 479999999999988765 45778889988888788788876 5554 4444445543 134 377777777763
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0014 Score=62.49 Aligned_cols=64 Identities=22% Similarity=0.210 Sum_probs=49.2
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecC---------CchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQ---------PSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~---------~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
.+++++++||- --||. +++.++++.+++.|.+||++-++ +..++...+|.|..|.. .+..+|..
T Consensus 77 ~~~dvviIDEa-q~l~~---~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~--vC~~Cg~~ 149 (190)
T PRK04296 77 EKIDCVLIDEA-QFLDK---EQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKA--ICVHCGRK 149 (190)
T ss_pred CCCCEEEEEcc-ccCCH---HHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeE--EccccCCc
Confidence 57899999999 22443 44677777777789999999999 66678888999999963 56677754
|
|
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0045 Score=65.30 Aligned_cols=72 Identities=19% Similarity=0.318 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCC-----CHHHHHHH----------HHHHHHHHH-cCCeEEEEecCCchHHHhc
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGL-----DARAATTV----------IRMVRNTVD-MGRTVVCTIHQPSIDIFYS 202 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgL-----D~~~~~~i----------~~~L~~l~~-~g~tvi~~~H~~~~~i~~~ 202 (531)
-.-|=.+|..||=...++||+||=||.= |...+..+ .+.++.+.+ .|.+.|+++--.. +.+..
T Consensus 326 STSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsg-dy~~v 404 (448)
T PF09818_consen 326 STSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSG-DYFDV 404 (448)
T ss_pred hHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccch-hhHhh
Confidence 3667788899999999999999999964 44444433 556677754 5887777775433 67888
Q ss_pred cCeEEEEcc
Q 042733 203 FDELFLLKQ 211 (531)
Q Consensus 203 ~d~v~lL~~ 211 (531)
+|+|++|++
T Consensus 405 AD~Vi~Md~ 413 (448)
T PF09818_consen 405 ADRVIMMDE 413 (448)
T ss_pred CCEEEEecC
Confidence 999999985
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.004 Score=66.09 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=46.3
Q ss_pred HHHhhCCCeEEEeC----------CCCCCCHHHHHHHHHHHHHHHH----cCCeEEEEecCCchHHHhccCeEEEEccCc
Q 042733 148 VEFVANPSIISRDE----------PISGLDARAATTVIRMVRNTVD----MGRTVVCTIHQPSIDIFYSFDELFLLKQVG 213 (531)
Q Consensus 148 ~aL~~~p~lllLDE----------PtsgLD~~~~~~i~~~L~~l~~----~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G 213 (531)
.+....|.++++|| +.+|.|...++.+.++|..+.. .+..||++||+|+. .|.-+ +.. |
T Consensus 233 ~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~-----LDpAl-lR~-G 305 (398)
T PTZ00454 233 LARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT-----LDPAL-LRP-G 305 (398)
T ss_pred HHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh-----CCHHH-cCC-C
Confidence 34457899999999 5567888888888888877642 25679999998752 23322 332 4
Q ss_pred e---eeecCCCCC
Q 042733 214 Q---EISVGPLGP 223 (531)
Q Consensus 214 ~---~v~~G~~~~ 223 (531)
| .++.+.|+.
T Consensus 306 Rfd~~I~~~~P~~ 318 (398)
T PTZ00454 306 RLDRKIEFPLPDR 318 (398)
T ss_pred cccEEEEeCCcCH
Confidence 4 366766653
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0022 Score=67.08 Aligned_cols=121 Identities=18% Similarity=0.208 Sum_probs=67.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCce-EEEEEEEcCcccch--hhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGY-ITRNITVSGYPEKQ--ETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIE 122 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~-~~G~i~~~g~~~~~--~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~ 122 (531)
+++.+..||+||||||+|++|++...... ..+.+.....|..- ...++..+.+.|...--...+.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~------------ 201 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNF------------ 201 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCH------------
Confidence 37888999999999999999998532100 01233333333211 1122234566665321000000
Q ss_pred HHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhc
Q 042733 123 EGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYS 202 (531)
Q Consensus 123 ~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~ 202 (531)
.-++-.+|=++|+++++.|-- |..+....++ .+..|..|+.|.|-.+ ....
T Consensus 202 --------------------~~~l~~aLR~~Pd~i~vGEiR---d~et~~~al~----aa~tGh~v~tTlHa~~--~~~~ 252 (358)
T TIGR02524 202 --------------------AAGVRNALRRKPHAILVGEAR---DAETISAALE----AALTGHPVYTTLHSSG--VAET 252 (358)
T ss_pred --------------------HHHHHHHhccCCCEEeeeeeC---CHHHHHHHHH----HHHcCCcEEEeeccCC--HHHH
Confidence 111223566799999999944 5555543332 3346888999999754 3444
Q ss_pred cCeEE
Q 042733 203 FDELF 207 (531)
Q Consensus 203 ~d~v~ 207 (531)
.+|++
T Consensus 253 i~Rl~ 257 (358)
T TIGR02524 253 IRRLV 257 (358)
T ss_pred HHHHH
Confidence 45544
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0022 Score=64.36 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=35.2
Q ss_pred HHHHHHHHh--hCCCeEEEeCCCCCCCH-------H-HHHHHHHHHHHHHHc-CCeEEEEecC
Q 042733 143 RLTVAVEFV--ANPSIISRDEPISGLDA-------R-AATTVIRMVRNTVDM-GRTVVCTIHQ 194 (531)
Q Consensus 143 Rv~iA~aL~--~~p~lllLDEPtsgLD~-------~-~~~~i~~~L~~l~~~-g~tvi~~~H~ 194 (531)
-+..++.++ .+|+++++|..+.-.+. . ...+++..|++++++ +.||++++|-
T Consensus 128 i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~ 190 (271)
T cd01122 128 VLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHL 190 (271)
T ss_pred HHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 334444444 47999999998664432 1 234667778888764 9999999884
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.002 Score=69.55 Aligned_cols=60 Identities=10% Similarity=0.052 Sum_probs=41.7
Q ss_pred hCCCeEEEeCCCCC----CC-----HHHHHHHHHHHHHHHH-cCCeEEEEecCCch-------HHHhccCeEEEEcc
Q 042733 152 ANPSIISRDEPISG----LD-----ARAATTVIRMVRNTVD-MGRTVVCTIHQPSI-------DIFYSFDELFLLKQ 211 (531)
Q Consensus 152 ~~p~lllLDEPtsg----LD-----~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~-------~i~~~~d~v~lL~~ 211 (531)
.+|+++++|.-++= ++ ....+++...|.++++ .|.|+++++|.... .+.+.+|.|+.|+.
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~ 245 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEG 245 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEec
Confidence 47999999987652 11 2334566666777765 59999999996432 14567899999874
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0022 Score=53.42 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=25.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRN 180 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~ 180 (531)
.|++++||||+++||+.....++++|++
T Consensus 63 ~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 63 SPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp TBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3789999999999999999999999874
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0062 Score=65.34 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=47.3
Q ss_pred EeCC--CCCCCHHHHHHHHHHHHHHHHcCC-------eEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 159 RDEP--ISGLDARAATTVIRMVRNTVDMGR-------TVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 159 LDEP--tsgLD~~~~~~i~~~L~~l~~~g~-------tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+.|| +.|+||.....+.+++.+....+. ||++.+||.+. ..+|++..+.+ |+++..+..
T Consensus 276 ~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~d-G~ivLsr~l 343 (440)
T TIGR01026 276 AGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILD-GHIVLSRAL 343 (440)
T ss_pred cCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccc-eEEEEecch
Confidence 4665 569999999999999998876666 78888898642 35788888886 999998765
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0016 Score=75.72 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=47.3
Q ss_pred HHHHHhhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 146 VAVEFVANPSIISRDEPISGL-DARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~ 731 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS 731 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 567788999999999999999 799999999999999888999999999986
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0049 Score=60.44 Aligned_cols=71 Identities=11% Similarity=0.134 Sum_probs=44.3
Q ss_pred hCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhcc-CeEEE-EccCceeeecCCCCC
Q 042733 152 ANPSIISRDEPISGL-DARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSF-DELFL-LKQVGQEISVGPLGP 223 (531)
Q Consensus 152 ~~p~lllLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~-d~v~l-L~~~G~~v~~G~~~~ 223 (531)
.++++|++||..... |...+..+.+++.+..++|+++|+++++......... +++.= +. .|.++...++++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~-~g~~~~l~~pd~ 163 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLT-WGEIYQLNDLTD 163 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHh-cCCeeeCCCCCH
Confidence 478999999998764 6777778889898887777777666554322222211 11110 22 355666666653
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0011 Score=51.10 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
++++..||+|||||||+++|.=.
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998753
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.01 Score=55.98 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=30.4
Q ss_pred HHHHHHH--HHHHHhh-CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 042733 139 EQRKRLT--VAVEFVA-NPSIISRDEPISGLDARAATTVIRMVRNTVDM 184 (531)
Q Consensus 139 GerqRv~--iA~aL~~-~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~ 184 (531)
||++++. +++.+-. ++++ .|+|++|.....++.+.|.++.++
T Consensus 151 ~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 151 GERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 6777766 4454433 3443 399999999999999999887654
|
|
| >PF13175 AAA_15: AAA ATPase domain | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0044 Score=65.66 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHh------hC-CC---eEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCc
Q 042733 139 EQRKRLTVAVEFV------AN-PS---IISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPS 196 (531)
Q Consensus 139 GerqRv~iA~aL~------~~-p~---lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~ 196 (531)
|.|+.+.++..+. .+ +. ++++|||=+.|.|..++.+++.|.++.+ .+..||+|||.|.
T Consensus 345 G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~ 413 (415)
T PF13175_consen 345 GEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPF 413 (415)
T ss_pred chHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChh
Confidence 8998888877653 12 22 9999999999999999999999999987 5789999999874
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0085 Score=63.08 Aligned_cols=60 Identities=8% Similarity=0.051 Sum_probs=40.1
Q ss_pred hCCCeEEEeCCCC----CCC-----HHHHHHHHHHHHHHHH-cCCeEEEEecCCch-------HHHhccCeEEEEcc
Q 042733 152 ANPSIISRDEPIS----GLD-----ARAATTVIRMVRNTVD-MGRTVVCTIHQPSI-------DIFYSFDELFLLKQ 211 (531)
Q Consensus 152 ~~p~lllLDEPts----gLD-----~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~-------~i~~~~d~v~lL~~ 211 (531)
.+|+++++|+-.+ .+| ....+++...|.++++ .+.|++++.|-... .+.+.+|.|+.+..
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~ 233 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEG 233 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEc
Confidence 5899999999633 333 2334456666777765 58999999884221 24567898888863
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0077 Score=69.23 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=33.3
Q ss_pred hhCCCeEEEeC----------CCCCCCHHHHHHHHHHHHHHHHcCCe-EEEEecCCc
Q 042733 151 VANPSIISRDE----------PISGLDARAATTVIRMVRNTVDMGRT-VVCTIHQPS 196 (531)
Q Consensus 151 ~~~p~lllLDE----------PtsgLD~~~~~~i~~~L~~l~~~g~t-vi~~~H~~~ 196 (531)
-..|.+|++|| ++.++|......+.+.+..+.+++.. ||.++|.++
T Consensus 269 ~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~ 325 (733)
T TIGR01243 269 ENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPD 325 (733)
T ss_pred hcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChh
Confidence 45699999999 66777777777777777776655544 455788764
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0018 Score=59.60 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRM 177 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~ 177 (531)
+++++..+++++...|-++++ +..|......+.+.
T Consensus 107 ~~~~~~~~~~~~~~~p~ivv~----NK~Dl~~~~~~~~~ 141 (176)
T cd01881 107 KLYDLETILGLLTAKPVIYVL----NKIDLDDAEELEEE 141 (176)
T ss_pred HHhhhhhHHHHHhhCCeEEEE----EchhcCchhHHHHH
Confidence 556677778888889999998 88887666555543
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.025 Score=56.82 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=35.0
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEE
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELF 207 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~ 207 (531)
+..+|=++|++++++|... +.++..++ +.+..|.-++.|.|-.+ .....+|+.
T Consensus 142 l~~~lR~~PD~i~vgEiR~---~e~a~~~~----~aa~tGh~v~tTlHa~~--~~~ai~Rl~ 194 (264)
T cd01129 142 LRAILRQDPDIIMVGEIRD---AETAEIAV----QAALTGHLVLSTLHTND--APGAITRLL 194 (264)
T ss_pred HHHHhccCCCEEEeccCCC---HHHHHHHH----HHHHcCCcEEEEeccCC--HHHHHHHHH
Confidence 4455667999999999875 33333333 33446888999999755 455556654
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.015 Score=56.56 Aligned_cols=59 Identities=24% Similarity=0.192 Sum_probs=43.2
Q ss_pred hCCCeEEEeCC-----CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc--------hHHHhccCeEEEEc
Q 042733 152 ANPSIISRDEP-----ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS--------IDIFYSFDELFLLK 210 (531)
Q Consensus 152 ~~p~lllLDEP-----tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~--------~~i~~~~d~v~lL~ 210 (531)
.+++.+++|-. +.+.|...+..+.++++.+++.|.|+++++|... ..+...||.+++|.
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 36888999942 2345566677788899999888999999999631 11355789999885
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 531 | ||||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 6e-07 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-07 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-05 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-05 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 9e-05 |
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 3e-13
Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 36/166 (21%)
Query: 54 PGGAGKTTLMDVLAG-RKP-GGYITRNITVSGYPEKQETFA--RILGYCEQNDIHSPHDT 109
P GAGKTT + +++ KP G +TV G +E +++ Y +
Sbjct: 49 PNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEVRKLISYLPEEA------G 98
Query: 110 LYD---------FTHCLYMF--------IEEGMELVELNPFRQALFEQ-----RKRLTVA 147
Y F Y +E E+ L + ++L +A
Sbjct: 99 AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIA 158
Query: 148 VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193
+ NP + DEP SGLD A V ++++ G T++ + H
Sbjct: 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 3e-12
Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 47/212 (22%)
Query: 45 LNSLSGAFRPG---------GAGKTTLMDVLAGRKPG-GYIT---RNITVSGYPEKQETF 91
L LSG R G GAGK+TL+ +AG G G I + + + +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPL--EAWSATK--L 71
Query: 92 ARILGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALFE- 139
A Y Q + + + + L+
Sbjct: 72 ALHRAYLSQQ-----QTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQ 126
Query: 140 ----QRKRLTVA-------VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTV 188
+ +R+ +A + ++ DEP++ LD + + +++ G +
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAI 186
Query: 189 VCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220
V + H + + ++ +LLK G+ ++ G
Sbjct: 187 VMSSHDLNHTLRHA-HRAWLLKG-GKMLASGR 216
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 8e-10
Identities = 45/232 (19%), Positives = 85/232 (36%), Gaps = 58/232 (25%)
Query: 36 SVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAG-RKP-GGYITRNITVSGYPEKQETFAR 93
+ D+ + GD+ ++ G G GK+TL+D+L G +P G I +
Sbjct: 25 NFDLNK-GDILAVLG---QNGCGKSTLLDLLLGIHRPIQGKIE--------------VYQ 66
Query: 94 ILGYCEQNDIHSPHDTLYDFT-----------HCLYMF----------IEEGMELVELNP 132
+G+ Q + + ++ H + F + ++ + L
Sbjct: 67 SIGFVPQF-----FSSPFAYSVLDIVLMGRSTH-INTFAKPKSHDYQVAMQALDYLNLTH 120
Query: 133 FRQALFE-----QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRN-TVDMGR 186
+ F QR+ + +A + +I DEP S LD V+ ++ +
Sbjct: 121 LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNM 180
Query: 187 TVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKIFGV 238
TVV T HQP+ + + ++ LL Q G +I +F +
Sbjct: 181 TVVFTTHQPNQVVAIA-NKTLLLN--KQNFKFGE--TRNILTSENLTALFHL 227
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 9e-10
Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 34/167 (20%)
Query: 45 LNSLSGAFRPG---------GAGKTTLMDVLAGR-KP-GGYITRNITVSGYPEK-----Q 88
LN G F G GKTTL+ +LAG KP G + VS P+K
Sbjct: 368 LNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFP 427
Query: 89 ETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFR-QALFE----QRKR 143
T ++ + +P F + ++ + ++ Q + + +R
Sbjct: 428 GTVRQLFFKKIRGQFLNP------------QFQTDVVKPLRIDDIIDQEVQHLSGGELQR 475
Query: 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV-DMGRTVV 189
+ + + I DEP + LD+ +++R + +T
Sbjct: 476 VAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 3e-09
Identities = 72/490 (14%), Positives = 142/490 (28%), Gaps = 130/490 (26%)
Query: 55 GGAGKTTL-MDVLAGRKPGGYITRNI---TVSGYPEKQETFARILGYCEQNDIHSPHDTL 110
G+GKT + +DV K + I + + + Q D +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID--PNWTSR 216
Query: 111 YDFTHCLYMFIEEGME----LVELNPFRQALFEQRKRLTVAVEFVANPSIISRD----EP 162
D + + + I L++ P+ L ++ + +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCL------------------LVLLNVQNAKA 258
Query: 163 ISGLDARA---ATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSF--DEL--FLLKQVGQE 215
+ + TT + V + + T H + DE+ LLK +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTT----HISLDHHSMTLTPDEVKSLLLKYLD-- 312
Query: 216 ISVGPLGPSSIHLISYFE-KIFGVSKIKDGYNLATW--LLEVTALSQERAFGVDF----S 268
L P + + I I+DG LATW V
Sbjct: 313 CRPQDL-PREVLTTNPRRLSIIA-ESIRDG--LATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 269 DIYRNSELYKRAKAVITELSK-PAPVSKSL--RFSTQYSQSICTKLFAWSWKLAQQRWTK 325
YR +++ R +V + P + + + KL +S L +++ +
Sbjct: 369 AEYR--KMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKE 423
Query: 326 QQHLFNVMVSMYTAVLFLLVQNAGSLQLVAAVEWTIFYRESALGTYSAMPYALRKNKFRA 385
+S+ + L L V+ L S + Y N +
Sbjct: 424 ST------ISIPSIYLELKVKLENEYAL----------HRSIVDHY---------NIPKT 458
Query: 386 SNSNTCKLSCNLSFYAMIGFEWTAAMFFWYL-----------LLMLF--IFFYFTFYGMM 432
+S+ L Y F+ ++ + LF +F F F
Sbjct: 459 FDSDDLIPPY-LDQY-----------FYSHIGHHLKNIEHPERMTLFRMVFLDFRF---- 502
Query: 433 AEALSAKPQIAIIVSSSFYTIWNLFPGFVIPRPFVDNGEFQYGADGLLGISGILDL-DFL 491
L K + ++ +I N +P++ + + +Y + L+ + DFL
Sbjct: 503 ---LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY--ERLVN-----AILDFL 552
Query: 492 H-HSLEIYRT 500
+ +
Sbjct: 553 PKIEENLICS 562
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 33/167 (19%), Positives = 68/167 (40%), Gaps = 34/167 (20%)
Query: 45 LNSLSGAFRPG---------GAGKTTLMDVLAGR-KP-GGYITRNITVSGYPEK-----Q 88
L G R G G GKTT + +LAG +P G + ++TV+ P+ +
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYE 431
Query: 89 ETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFR-QALFE----QRKR 143
T +L + + ++S + E ++ + + + + + + +R
Sbjct: 432 GTVYELLSKIDSSKLNSN------------FYKTELLKPLGIIDLYDRNVEDLSGGELQR 479
Query: 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVV 189
+ +A + + I DEP + LD V R +R+ ++ +T +
Sbjct: 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 38/164 (23%)
Query: 56 GAGKTTLMDVLAGR-KPGGY---ITRNITVSGYP--EKQETFARILG------------- 96
G GKTT + +LAG+ P + + + + E Q F R+
Sbjct: 127 GTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVD 186
Query: 97 ------YCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVEL-NPFRQALFE----QRKRLT 145
+ ++ D + EE ++ +EL N + L + + +R+
Sbjct: 187 LLPKAVKGKVRELLKKVDEV--------GKFEEVVKELELENVLDRELHQLSGGELQRVA 238
Query: 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVV 189
+A + DEP S LD R V R++R + G+ V+
Sbjct: 239 IAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 8e-09
Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 28/159 (17%)
Query: 54 PGGAGKTTLMDVLAG-RKP-GGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLY 111
P G GKTTL+ ++ KP G I +G P + + + + I ++
Sbjct: 43 PNGIGKTTLLKTISTYLKPLKG----EIIYNGVPITK--VKGKIFFLPEEIIVPRKISVE 96
Query: 112 DFTHCLYMF------------IEEGMELVELNPFRQALFE----QRKRLTVAVEFVANPS 155
D+ L I + +E VE+ ++ L E +R+ +A + N
Sbjct: 97 DY---LKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAE 153
Query: 156 IISRDEPISGLDARAATTVIRMVRNTV-DMGRTVVCTIH 193
I D+P+ +D + V++ + + + G ++ +
Sbjct: 154 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 192
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 34/167 (20%)
Query: 45 LNSLSGAFRPG---------GAGKTTLMDVLAGR-KP-GGYITRNITVSGYPEK-----Q 88
L G + G G GKTT + +LAG +P G I ++TV+ P+ +
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYE 361
Query: 89 ETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFR-QALFE----QRKR 143
T +L + + ++S + E ++ + + + + E + +R
Sbjct: 362 GTVYELLSKIDASKLNSNF------------YKTELLKPLGIIDLYDREVNELSGGELQR 409
Query: 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVV 189
+ +A + + I DEP + LD V R +R+ ++ +T +
Sbjct: 410 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 34/160 (21%)
Query: 54 PGGAGKTTLMDVLAGRKP-GGYIT---RNITVSGYPEKQETFARILGYCEQN-DIHSPHD 108
P G+GKTTL+ ++G P G I + + Y + +
Sbjct: 38 PNGSGKTTLLRAISGLLPYSGNIFINGMEVR---------KIRNYIRYSTNLPEAYEIGV 88
Query: 109 TLYD---FTHCLYMF------IEEGMELVELNP--FRQALFE----QRKRLTVAVEFVAN 153
T+ D + E ++ ++L R+ L++ Q + ++ +
Sbjct: 89 TVNDIVYLY--EELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQ 146
Query: 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH 193
P I+ DEP +DA + R ++ + G+ + H
Sbjct: 147 PEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH 183
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 36/224 (16%), Positives = 66/224 (29%), Gaps = 47/224 (20%)
Query: 3 PMTEAAIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGD----------LNSLSGAF 52
+ + A N R + F +S ++ + L +G
Sbjct: 232 NFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEA 291
Query: 53 RPG---------GAGKTTLMDVLAGR-KP-GGYITRNITVSGYPEKQETFARILGYCEQN 101
+ G G GKTT +L G G +T +IL Y Q
Sbjct: 292 KEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK-------------QILSYKPQR 338
Query: 102 DIHSPHDTLYDFTHCLYM--------FIEEGMELVELNPFR-QALFE----QRKRLTVAV 148
+ T+ + F EE + + L+ + + + ++L +A
Sbjct: 339 IFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAA 398
Query: 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTI 192
+ D+P S LD V + ++ + V I
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 5e-07
Identities = 39/198 (19%), Positives = 81/198 (40%), Gaps = 37/198 (18%)
Query: 54 PGGAGKTTLMDVLAGRKPGGYITRN-ITVSGYP--EKQETFARI---LGYCEQNDIH--- 104
GAGKTTL+++L +P T + + G + + + +G+ +
Sbjct: 55 LNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSH-SLLEKF 110
Query: 105 SPHDTLYDF-------THCLYMFI--------EEGMELVELNPFRQALFE-----QRKRL 144
+ + D + +Y I + ++LV ++ Q +++R+
Sbjct: 111 QEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRV 170
Query: 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGR--TVVCTIHQPSIDIFYS 202
+A + P ++ DEP +GLD A +++ ++ + D ++ H +I +
Sbjct: 171 MIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITAN 229
Query: 203 FDELFLLKQVGQEISVGP 220
F ++ LLK GQ I G
Sbjct: 230 FSKILLLKD-GQSIQQGA 246
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 4e-05
Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 26/129 (20%)
Query: 54 PGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHD-TLYD 112
P G GK+TLM +A + G+ T+ R Y E + + D ++ D
Sbjct: 469 PNGCGKSTLMRAIANGQVDGFPTQEE------------CRT-VYVEHDIDGTHSDTSVLD 515
Query: 113 FTHCLYMFIEEGME--LVELNPFRQALFE---------QRKRLTVAVEFVANPSIISRDE 161
F + +E ++ L+E F + + +L +A + N I+ DE
Sbjct: 516 FVFESGVGTKEAIKDKLIEFG-FTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDE 574
Query: 162 PISGLDARA 170
P + LD
Sbjct: 575 PTNHLDTVN 583
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 40/192 (20%)
Query: 56 GAGKTTLMDVLAG-RKP-GGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDF 113
G+GK+TL+ ++AG +P G ++ G +K R +G Q P D F
Sbjct: 43 GSGKSTLLQIVAGLIEPTSG----DVLYDGERKKGYEIRRNIGIAFQY----PEDQF--F 92
Query: 114 THCLY---MF--------------IEEGMELVELNP---FRQALFE----QRKRLTVAVE 149
++ F +++ ME V L+ + F +++R+ +A
Sbjct: 93 AERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASV 152
Query: 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSF-DELFL 208
V P I+ DEP+ GLD T ++R+V +G+TV+ H I+ + D + +
Sbjct: 153 IVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH--DIETVINHVDRVVV 210
Query: 209 LKQVGQEISVGP 220
L++ G+++ G
Sbjct: 211 LEK-GKKVFDGT 221
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 24/107 (22%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 121 IEEGMELVELNPFRQ-ALFE----QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVI 175
++ ++ + + Q+KR+ +A V P ++ DEP +GLD + ++
Sbjct: 124 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIM 183
Query: 176 RMVRN-TVDMGRTVVCTIHQPSIDIFYSF-DELFLLKQVGQEISVGP 220
+++ ++G T++ H IDI + D +F++K+ G+ I G
Sbjct: 184 KLLVEMQKELGITIIIATH--DIDIVPLYCDNVFVMKE-GRVILQGN 227
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 531 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.98 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.98 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.97 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.96 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.96 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.96 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.96 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.96 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.95 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.95 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.94 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.94 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.93 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.93 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.93 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.92 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.92 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.91 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.9 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.88 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.87 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.87 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.86 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.86 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.83 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.83 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.82 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.79 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.78 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.75 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.73 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.73 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.68 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.67 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.64 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.63 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.63 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.62 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.61 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.6 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.57 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.57 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.55 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.54 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.54 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.54 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.53 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.51 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.5 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.49 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.49 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.47 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.46 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.46 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.45 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.42 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.42 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.4 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.4 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.39 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.38 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.37 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.35 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.32 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.32 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.3 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.3 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.3 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.29 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.29 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.28 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.27 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.18 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.17 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.16 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.15 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.14 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.11 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.08 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.06 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.02 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.96 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.93 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.92 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 98.91 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 98.88 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.87 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 98.87 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.85 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.84 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.83 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.74 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.7 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.7 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.57 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.45 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.43 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.42 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.39 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.34 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.29 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.27 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.26 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.25 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.24 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 98.22 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.19 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.18 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.17 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.17 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.12 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.12 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.09 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.98 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 97.9 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.88 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 97.87 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.84 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 97.8 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.72 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.67 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.66 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.53 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.53 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.51 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.45 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 97.43 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.42 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.39 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.31 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 97.29 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.05 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.04 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.93 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.86 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.86 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 96.76 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.65 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 96.62 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 96.51 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.41 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.4 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.34 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.3 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.24 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.22 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.18 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.08 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 96.05 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.05 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.04 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.03 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.0 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.89 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.87 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 95.77 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 95.61 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.58 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 95.55 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 95.53 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 95.45 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.44 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 95.36 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.34 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.33 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 95.29 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.27 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 95.26 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.01 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 95.0 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 94.96 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 94.85 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 94.83 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 94.72 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 94.68 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 94.65 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.65 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 94.53 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 94.33 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 94.14 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 94.06 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 94.04 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 93.99 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 93.73 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 93.7 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 93.66 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 93.53 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 93.5 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 93.46 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 93.41 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 93.36 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 93.05 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 93.0 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 92.95 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 92.93 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 92.89 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 92.81 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 92.74 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 92.74 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 92.67 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 92.6 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 92.59 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 92.5 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 92.41 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 92.29 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 92.28 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 92.25 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 92.05 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 91.99 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 91.94 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 91.72 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 91.59 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.32 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 90.96 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 90.91 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 90.83 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 90.63 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 90.57 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 90.5 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 90.26 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 90.03 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 89.87 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 89.86 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 89.81 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 89.65 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 89.6 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 89.58 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 89.45 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 89.38 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 89.32 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 89.29 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 89.25 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 89.2 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 89.2 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 89.07 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 89.0 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 88.93 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 88.89 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 88.79 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 88.78 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 88.77 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 88.75 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 88.67 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 88.64 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 88.57 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 88.49 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 88.42 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 88.4 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 88.37 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 88.33 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 88.3 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 88.28 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 88.27 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 88.22 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 88.2 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 88.16 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 88.08 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 88.04 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 87.89 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 87.88 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 87.87 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 87.83 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 87.75 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 87.74 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 87.67 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 87.67 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 87.58 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 87.57 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 87.33 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 87.21 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 87.21 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 87.12 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 87.11 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 87.1 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 87.01 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 86.96 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 86.92 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 86.84 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 86.83 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 86.82 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 86.79 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 86.73 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 86.7 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 86.68 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 86.65 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 86.53 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 86.4 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 86.38 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 86.38 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 86.32 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 86.25 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 86.24 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 86.16 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 86.15 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 86.14 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 86.14 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 86.11 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 86.06 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 86.02 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 86.02 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 85.98 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 85.98 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 85.8 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 85.78 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 85.76 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 85.72 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 85.65 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 85.61 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 85.58 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 85.54 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 85.5 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 85.46 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 85.46 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 85.31 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 85.3 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 85.26 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 85.2 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 85.18 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 85.07 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 85.04 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 84.96 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 84.95 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 84.95 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 84.92 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 84.88 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 84.84 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 84.82 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 84.69 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 84.68 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 84.67 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 84.65 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 84.62 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 84.58 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 84.55 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 84.5 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 84.45 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 84.4 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 84.36 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 84.32 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 84.32 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 84.32 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 84.27 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 84.23 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 84.23 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 84.18 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 84.11 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 84.1 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 84.05 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 84.02 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 84.01 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 83.96 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 83.95 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 83.95 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 83.91 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 83.9 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 83.86 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 83.79 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 83.78 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 83.76 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 83.75 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 83.63 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 83.41 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 83.41 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 83.33 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 83.29 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 83.26 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 83.25 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 83.25 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 83.05 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 83.03 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 83.01 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 82.95 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 82.9 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 82.89 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 82.86 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 82.8 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 82.78 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 82.72 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 82.71 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 82.68 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 82.54 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 82.5 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 82.25 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 82.22 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 82.2 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 82.16 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 82.11 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 82.01 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 81.86 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 81.72 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 81.67 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 81.64 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 81.59 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 81.59 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 81.35 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 81.24 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 80.98 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 80.98 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 80.95 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 80.67 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 80.65 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 80.21 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=327.87 Aligned_cols=194 Identities=21% Similarity=0.266 Sum_probs=167.2
Q ss_pred ceEEEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-----
Q 042733 25 PHYISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----- 88 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----- 88 (531)
...|+++||+++|+.+. ..+|+|||+.+.+| |||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p--~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECSSCCHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHH
Confidence 34689999999997432 36899999888777 99999999999998664 47999999987532
Q ss_pred -hhhcceEEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHh
Q 042733 89 -ETFARILGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFV 151 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~ 151 (531)
...++.+||++|++.+++.+||+|+. .+..++++++++.+||.+..++.+ ||||||+|||||+
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh
Confidence 12467899999999999999999982 234567889999999998877766 9999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
.+|++|||||||+|||+.++..++++|++++++ |.|||++||+++ .+...|||+++|++ |+++..|+++
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~iv~~g~~~ 249 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQDTVS 249 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEECCBHH
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999999999865 999999999987 57788999999996 9999999864
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-38 Score=314.59 Aligned_cols=191 Identities=19% Similarity=0.334 Sum_probs=158.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc--h---hhhc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK--Q---ETFA 92 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~--~---~~~~ 92 (531)
.|+++||+++|+. ...+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. . ..++
T Consensus 7 ~l~i~~ls~~y~~-~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p--~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 7 ILKVEELNYNYSD-GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP--SSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp EEEEEEEEEECTT-SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECCCSHHHHHHHH
T ss_pred EEEEEEEEEEECC-CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeEEEECCEECCcccccHHHHh
Confidence 4677777777742 234777777666655 99999999999998654 4799999998762 1 2356
Q ss_pred ceEEEEecCCC-CCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCC
Q 042733 93 RILGYCEQNDI-HSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 93 ~~igyv~Q~~~-~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ 155 (531)
+.+||++|++. .++.+||+|+. .+..++++++++.+++.+..++.+ ||||||+|||||+.+|+
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~ 163 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK 163 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 78999999863 44578999872 233457889999999998877766 99999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 156 IISRDEPISGLDARAATTVIRMVRNTV-DMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||||+|||+.++..+++.|++++ ++|+|||++||+++ .+...||++++|++ |++++.|+++
T Consensus 164 lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i~~~g~~~ 229 (275)
T 3gfo_A 164 VLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQGNPK 229 (275)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEEEEEECHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999997 56999999999998 47788999999986 9999999874
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-38 Score=323.79 Aligned_cols=190 Identities=26% Similarity=0.350 Sum_probs=162.8
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCccc----ch-hhhc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPE----KQ-ETFA 92 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~----~~-~~~~ 92 (531)
.|+++||+++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+. .. ...+
T Consensus 4 ~l~i~~ls~~y~--~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~i~~~~~~~~~~~ 79 (359)
T 3fvq_A 4 ALHIGHLSKSFQ--NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP--DSGEISLSGKTIFSKNTNLPVRE 79 (359)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEESSSCBCCGGG
T ss_pred EEEEEeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEECcccccccchhh
Confidence 467888888884 456788888777766 99999999999998664 479999999865 11 2345
Q ss_pred ceEEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 93 RILGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
+.+|||+|+..++|++||+|+. .+..++++++++.++|.+..++.+ ||||||+|||||+.+|++
T Consensus 80 r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~l 159 (359)
T 3fvq_A 80 RRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPEL 159 (359)
T ss_dssp SCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 7799999999999999999982 344567899999999998888776 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||||||+|||+..+.++++.|+++.+ .|.|+|++|||.+ ++..+|||+++|++ |+++..|+++
T Consensus 160 LLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~ 224 (359)
T 3fvq_A 160 ILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRILQTASPH 224 (359)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEEeCHH
Confidence 999999999999999999998888764 5999999999987 57889999999996 9999999874
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-38 Score=324.23 Aligned_cols=190 Identities=21% Similarity=0.289 Sum_probs=164.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILG 96 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~ig 96 (531)
.|+++||+++|+ +..+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+|
T Consensus 3 ~l~~~~l~~~yg--~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~~~~~~~~~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWG--EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMNDTPPAERGVG 78 (381)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTCCGGGSCEE
T ss_pred EEEEEeEEEEEC--CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC--CCeEEEECCEECCCCCHHHCCEE
Confidence 367888888884 456788888777766 99999999999998764 47999999987643 22356799
Q ss_pred EEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
||+|+..++|.+||+|+ ..+.+++++++++.+++.+..++.+ ||||||+|||||+.+|++||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD 158 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999998 2334567889999999998887776 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||+|||+..+.++.+.|+++.++ |.|+|++|||++ ++..+|||+++|++ |+++..|+++
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~ 219 (381)
T 3rlf_A 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 219 (381)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCHH
Confidence 999999999999999999999765 999999999987 67889999999996 9999999874
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=309.08 Aligned_cols=189 Identities=22% Similarity=0.239 Sum_probs=162.0
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-----hhhhc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-----QETFA 92 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-----~~~~~ 92 (531)
.|+++||+++|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. ...++
T Consensus 24 ~l~i~~l~~~y~--~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~ 99 (263)
T 2olj_A 24 MIDVHQLKKSFG--SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF--DEGEIIIDGINLKAKDTNLNKVR 99 (263)
T ss_dssp SEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEESSSTTCCHHHHH
T ss_pred eEEEEeEEEEEC--CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCEECCCccccHHHHh
Confidence 489999999994 457899999887766 99999999999998654 4799999997652 12345
Q ss_pred ceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCC
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ 155 (531)
+.+||++|++.+++.+||+|+... ..++++++++.+++.+..++.+ ||||||+|||||+.+|+
T Consensus 100 ~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~ 179 (263)
T 2olj_A 100 EEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPK 179 (263)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCC
Confidence 679999999999999999997321 2345778899999988777665 99999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 156 IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |+++..|++
T Consensus 180 lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 243 (263)
T 2olj_A 180 IMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIEEGKP 243 (263)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999877999999999986 46778999999986 999998875
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=305.01 Aligned_cols=190 Identities=19% Similarity=0.278 Sum_probs=157.8
Q ss_pred EEEEeEEEEEeCCC--ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh---
Q 042733 28 ISLNEIVYSVDMPQ--IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET--- 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~--~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~--- 90 (531)
|+++||+++|+.+. ..+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~ 79 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTNDLDDDELTK 79 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEcccCCHHHHHH
Confidence 67888888886432 35888888777766 99999999999998664 47999999976532 11
Q ss_pred -hcceEEEEecCCCCCCCCcHHhHH--------------HHHHHHHHHHHHhcCCchhh-hccH-----HHHHHHHHHHH
Q 042733 91 -FARILGYCEQNDIHSPHDTLYDFT--------------HCLYMFIEEGMELVELNPFR-QALF-----EQRKRLTVAVE 149 (531)
Q Consensus 91 -~~~~igyv~Q~~~~~~~ltv~e~~--------------~~~~~~~~~~l~~l~l~~~~-~~~~-----GerqRv~iA~a 149 (531)
.++.+||++|++.+++.+||+|+. ....+++.+.++.+++.+.. ++.+ ||||||+||||
T Consensus 80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra 159 (235)
T 3tif_A 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA 159 (235)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 234699999999999999999972 12245577889999997643 5544 99999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ +...||++++|++ |+++..++++
T Consensus 160 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~i~~~~~~~ 230 (235)
T 3tif_A 160 LANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GEVEREEKLR 230 (235)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEECC
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CEEEEEcChh
Confidence 99999999999999999999999999999999865 999999999986 4578999999996 9999988764
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=309.29 Aligned_cols=189 Identities=19% Similarity=0.184 Sum_probs=158.1
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---------
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--------- 88 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--------- 88 (531)
.|+++||+++|+ ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 6 ~l~i~~l~~~y~--~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~ 81 (262)
T 1b0u_A 6 KLHVIDLHKRYG--GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNINLVRDKDGQLK 81 (262)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECCEEECTTSSEE
T ss_pred eEEEeeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcccccccccccc
Confidence 367777777774 345777777666655 99999999999998664 47999999976531
Q ss_pred -------hhhcceEEEEecCCCCCCCCcHHhHHHH------------HHHHHHHHHHhcCCchh-hhccH-----HHHHH
Q 042733 89 -------ETFARILGYCEQNDIHSPHDTLYDFTHC------------LYMFIEEGMELVELNPF-RQALF-----EQRKR 143 (531)
Q Consensus 89 -------~~~~~~igyv~Q~~~~~~~ltv~e~~~~------------~~~~~~~~l~~l~l~~~-~~~~~-----GerqR 143 (531)
..+++.+||++|++.+++.+||+|+... ..++++++++.+++.+. .++.+ |||||
T Consensus 82 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qR 161 (262)
T 1b0u_A 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR 161 (262)
T ss_dssp ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHH
T ss_pred ccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHH
Confidence 1345679999999999999999997321 23457888999999887 77665 99999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |+++..|++
T Consensus 162 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 237 (262)
T 1b0u_A 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDP 237 (262)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999999999877999999999986 46778999999986 999998875
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=302.84 Aligned_cols=187 Identities=18% Similarity=0.182 Sum_probs=155.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h---hh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E---TF 91 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~---~~ 91 (531)
.|+++|++++|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... . ..
T Consensus 4 ~l~~~~l~~~y~--~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~ 79 (224)
T 2pcj_A 4 ILRAENIKKVIR--GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP--TEGKVFLEGKEVDYTNEKELSLL 79 (224)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC--SEEEEEETTEECCSSCHHHHHHH
T ss_pred EEEEEeEEEEEC--CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCCCCHHHHHHH
Confidence 467778877774 346777777666655 99999999999998654 47999999976532 1 12
Q ss_pred c-ceEEEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 92 A-RILGYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 92 ~-~~igyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
+ +.+||++|++.+++.+||+|+.. ...++++++++.+++.+..++.+ ||||||+|||||+.+|
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p 159 (224)
T 2pcj_A 80 RNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEP 159 (224)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCC
T ss_pred HhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 2 57999999999999999999821 22356788999999988776655 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
++|+|||||+|||+.++..+.+.|++++++|+|||++|||++ .+ ..||++++|++ |++++.|+
T Consensus 160 ~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~-G~i~~~g~ 222 (224)
T 2pcj_A 160 ILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKD-GKVVGEIT 222 (224)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEET-TEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEEC-CEEEEEee
Confidence 999999999999999999999999999877999999999976 34 78999999986 99999886
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=305.99 Aligned_cols=189 Identities=19% Similarity=0.298 Sum_probs=161.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARIL 95 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~i 95 (531)
.|+++||+++|+ ++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.+
T Consensus 15 ~l~i~~l~~~y~--~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 15 AVVVKDLRKRIG--KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEETTTCHHHHHTTE
T ss_pred eEEEEEEEEEEC--CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCccHHHHhhcE
Confidence 478999999994 457899999888776 99999999999998653 47999999987532 2356779
Q ss_pred EEEecCCCCCCCCcHHhHHH-----------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEE
Q 042733 96 GYCEQNDIHSPHDTLYDFTH-----------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISR 159 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllL 159 (531)
||++|++.+++.+||+|+.. ...++++++++.+++.+..++.+ ||||||+|||||+.+|++|+|
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL 170 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAIL 170 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999821 11245778899999988777665 999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 160 DEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 160 DEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++.|++
T Consensus 171 DEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 230 (256)
T 1vpl_A 171 DEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV 230 (256)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH
T ss_pred eCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecCH
Confidence 9999999999999999999999877999999999986 46678999999986 999998875
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=307.08 Aligned_cols=189 Identities=20% Similarity=0.226 Sum_probs=159.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~ 93 (531)
.|+++||+++|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 7 ~l~i~~l~~~y~--~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~ 82 (257)
T 1g6h_A 7 ILRTENIVKYFG--EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDITNKEPAELYHY 82 (257)
T ss_dssp EEEEEEEEEEET--TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEeeeEEEEC--CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHHHhC
Confidence 578888888884 356888888666655 99999999999998664 47999999987532 22355
Q ss_pred eEEEEecCCCCCCCCcHHhHHH------------------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHH
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH------------------------CLYMFIEEGMELVELNPFRQALF-----EQRKRL 144 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~------------------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv 144 (531)
.+||++|++.+++.+||+|+.. ....++++.++.+++.+..++.+ ||||||
T Consensus 83 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv 162 (257)
T 1g6h_A 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLV 162 (257)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred CEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHH
Confidence 7999999998889999998721 11345778899999988777665 999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++.|++
T Consensus 163 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 237 (257)
T 1g6h_A 163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRG 237 (257)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEES
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 9999999999999999999999999999999999999877999999999987 46778999999986 999998876
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=316.91 Aligned_cols=193 Identities=21% Similarity=0.307 Sum_probs=166.2
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcce
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARI 94 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~ 94 (531)
...|+++||+++|+ +++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.
T Consensus 12 ~~~l~~~~l~~~y~-g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~r~ 88 (355)
T 1z47_A 12 SMTIEFVGVEKIYP-GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRVTDLPPQKRN 88 (355)
T ss_dssp CEEEEEEEEEECCT-TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTCCGGGSS
T ss_pred CceEEEEEEEEEEc-CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEECCcCChhhCc
Confidence 35689999999993 2456899999888776 99999999999998664 47999999987532 234677
Q ss_pred EEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 95 LGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
+|||+|+..++|.+||+|+. ....++++++++.+++.+..++.+ ||||||+|||||+.+|++|+
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 168 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLL 168 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999982 123456888999999998877766 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||||+|||+.++.++.+.|++++++ |.|+|++|||++ ++..+||++++|++ |+++..|+++
T Consensus 169 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 231 (355)
T 1z47_A 169 FDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGTPE 231 (355)
T ss_dssp EESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999999765 999999999986 57788999999996 9999999864
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-37 Score=316.57 Aligned_cols=189 Identities=21% Similarity=0.251 Sum_probs=160.3
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igy 97 (531)
|+++|++++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+||
T Consensus 4 l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~r~ig~ 79 (359)
T 2yyz_A 4 IRVVNLKKYFG--KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP--TSGEIYFDDVLVNDIPPKYREVGM 79 (359)
T ss_dssp EEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEEEEEEC--CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC--CccEEEECCEECCCCChhhCcEEE
Confidence 67777777774 345777777766655 99999999999998663 47999999987542 123567999
Q ss_pred EecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
|+|+..++|++||+|+. .+..++++++++.+++.+..++.+ ||||||+|||||+.+|++|+|||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDE 159 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDE 159 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999982 122356889999999998877766 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+|||+..+.++.+.|+++.++ |.|+|++|||++ ++..+||++++|++ |+++..|+++
T Consensus 160 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 219 (359)
T 2yyz_A 160 PLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTPD 219 (359)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999765 999999999976 57788999999996 9999999864
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=302.14 Aligned_cols=189 Identities=17% Similarity=0.210 Sum_probs=155.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~ 93 (531)
.++++||+++|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .. .++
T Consensus 6 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~ 81 (240)
T 1ji0_A 6 VLEVQSLHVYYG--AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHHT
T ss_pred eEEEEeEEEEEC--CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCCHHHHHhC
Confidence 467778877774 345777777666655 99999999999998653 47999999987532 12 245
Q ss_pred eEEEEecCCCCCCCCcHHhHHH----------HHHHHHHHHHHhcC-CchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH----------CLYMFIEEGMELVE-LNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~----------~~~~~~~~~l~~l~-l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
.+||++|++.+++.+||+|+.. ...+.+++.++.++ +.+..++.+ ||||||+|||||+.+|++|
T Consensus 82 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll 161 (240)
T 1ji0_A 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLL 161 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 5999999999999999999721 22345677888884 776665554 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |+++..|++
T Consensus 162 lLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 223 (240)
T 1ji0_A 162 MMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGKA 223 (240)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999878999999999976 46788999999986 999998875
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-37 Score=317.35 Aligned_cols=190 Identities=22% Similarity=0.277 Sum_probs=160.7
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ET 90 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~ 90 (531)
.|+++||+++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ..
T Consensus 3 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~~~~~~~~~~~~ 78 (372)
T 1g29_1 3 GVRLVDVWKVFG--EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLVADPEKGIFVPP 78 (372)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEEEGGGTEECCG
T ss_pred EEEEEeEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC--CccEEEECCEECccccccccCCH
Confidence 367788888774 346777777766655 99999999999998663 47999999976532 12
Q ss_pred hcceEEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
.++.+|||+|+..++|++||+|+. ....++++++++.++|.+..++.+ ||||||+|||||+.+|
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 356799999999999999999982 123456888999999998877766 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|+|||||+|||+..+.++.+.|+++.++ |.|+|++|||++ ++..+||++++|++ |+++..|+++
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 225 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGSPD 225 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEEEEeCCHH
Confidence 999999999999999999999999999765 999999999986 57789999999996 9999999864
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=301.24 Aligned_cols=170 Identities=19% Similarity=0.271 Sum_probs=145.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEEEecCCCCCCCCcHHhHH---------HHH
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGYCEQNDIHSPHDTLYDFT---------HCL 117 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv~Q~~~~~~~ltv~e~~---------~~~ 117 (531)
+.+.+||||||||||+|+|+|..++ .+|+|.++|.+... ...++.+||++|++.+++.+||+|+. ...
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~ 103 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVER 103 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchH
Confidence 4567789999999999999998654 47999999987532 23456799999999999999999972 122
Q ss_pred HHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEE
Q 042733 118 YMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCT 191 (531)
Q Consensus 118 ~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~ 191 (531)
.++++++++.+++.+..++.+ ||||||+|||||+++|++|+|||||+|||+.+++.+++.|++++++ |+|||++
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~v 183 (240)
T 2onk_A 104 DRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV 183 (240)
T ss_dssp HHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 456788999999988776655 9999999999999999999999999999999999999999999764 9999999
Q ss_pred ecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 192 IHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 192 ~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
||+++ ++...||++++|++ |+++..|++
T Consensus 184 tHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 184 THDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp ESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred eCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99976 46788999999986 999998875
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-37 Score=316.60 Aligned_cols=189 Identities=24% Similarity=0.331 Sum_probs=159.3
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igy 97 (531)
|+++|++++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+||
T Consensus 4 l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~r~ig~ 79 (362)
T 2it1_A 4 IKLENIVKKFG--NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFDEKDVTELPPKDRNVGL 79 (362)
T ss_dssp EEEEEEEEESS--SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEeEEEEEC--CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CceEEEECCEECCcCCHhHCcEEE
Confidence 56777777773 345777777666655 99999999999998663 47999999987532 123567999
Q ss_pred EecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
|+|+..++|++||+|+. ....++++++++.+++.+..++.+ ||||||+|||||+.+|++|+|||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 159 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDE 159 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999982 123456888999999988877765 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+|||+..+.++.+.|+++.++ |.|+|++|||++ ++..+||++++|++ |+++..|+++
T Consensus 160 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 219 (362)
T 2it1_A 160 PLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTPD 219 (362)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999765 999999999986 57789999999996 9999999864
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-37 Score=316.48 Aligned_cols=189 Identities=25% Similarity=0.340 Sum_probs=161.4
Q ss_pred EEEEeEEEEEeCCCcc--ccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hh
Q 042733 28 ISLNEIVYSVDMPQIG--DLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~--iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~ 90 (531)
|+++||+++|+ ++. +|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ..
T Consensus 4 l~i~~l~~~y~--~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 4 IIVKNVSKVFK--KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp EEEEEEEEEEG--GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEEEETTEESSCG
T ss_pred EEEEeEEEEEC--CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECcccccccCCh
Confidence 67788888884 345 788887777665 99999999999998653 47999999976532 23
Q ss_pred hcceEEEEecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 91 FARILGYCEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
.++.+|||+|+..++|++||+|+. ....++++++++.+++.+..++.+ ||||||+|||||+.+|
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P 159 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDP 159 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999982 233467889999999998877766 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|+|||||+|||+..+.++.+.|+++.++ |.|+|++|||++ ++..+||++++|++ |+++..|+++
T Consensus 160 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 226 (353)
T 1oxx_K 160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKPE 226 (353)
T ss_dssp SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999999765 999999999986 57788999999996 9999999864
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-37 Score=305.47 Aligned_cols=191 Identities=21% Similarity=0.269 Sum_probs=163.4
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..|+++|++++|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++
T Consensus 10 ~~l~~~~l~~~~~--~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~ 85 (266)
T 4g1u_C 10 ALLEASHLHYHVQ--QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNLNSWQPKALAR 85 (266)
T ss_dssp CEEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEETTTSCHHHHHH
T ss_pred ceEEEEeEEEEeC--CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECCcCCHHHHhh
Confidence 3688999999985 467899988877766 99999999999997653 36899999987532 34556
Q ss_pred eEEEEecCCCCCCCCcHHhHH---------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh------C
Q 042733 94 ILGYCEQNDIHSPHDTLYDFT---------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA------N 153 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~---------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~------~ 153 (531)
.++|++|++.+++.+||+|+. ....++++++++.+++.+..++.+ ||||||+|||||++ +
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~ 165 (266)
T 4g1u_C 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT 165 (266)
T ss_dssp HEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred eEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 799999999888899999972 123456888999999988777665 99999999999999 9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++|||||||+|||+.++..+++.|++++++ |+|||++|||++ ++...||++++|++ |++++.|+++
T Consensus 166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~-G~i~~~g~~~ 233 (266)
T 4g1u_C 166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ-GKLVACGTPE 233 (266)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999999999876 579999999987 46778999999996 9999999874
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=316.25 Aligned_cols=189 Identities=21% Similarity=0.301 Sum_probs=154.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igy 97 (531)
|+++||+++|+ ++.+|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+||
T Consensus 12 l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~r~ig~ 87 (372)
T 1v43_A 12 VKLENLTKRFG--NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDVTYLPPKDRNISM 87 (372)
T ss_dssp EEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCGGGGTEEE
T ss_pred EEEEEEEEEEC--CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECCCCChhhCcEEE
Confidence 57777777773 345677777666655 99999999999998663 47999999987532 123567999
Q ss_pred EecCCCCCCCCcHHhHH-----------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDFT-----------HCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~-----------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
|+|+..++|++||+|+. ....++++++++.+++.+..++.+ ||||||+|||||+.+|++|+|||
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 167 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 167 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999999999999982 233467889999999998887766 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+|||+..+.++.+.|+++.++ |.|+|++|||++ ++..+||++++|++ |+++..|+++
T Consensus 168 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 227 (372)
T 1v43_A 168 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSPT 227 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999765 999999999976 57788999999996 9999999864
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=299.18 Aligned_cols=191 Identities=23% Similarity=0.379 Sum_probs=159.2
Q ss_pred EEEEEeEEEEEeCCC---ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcce
Q 042733 27 YISLNEIVYSVDMPQ---IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~---~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ 94 (531)
.|+++||+++|+.++ +.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.....+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~ 79 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRN 79 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECCHHHHGGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEECchHHhhhh
Confidence 367888888885212 45888888777666 99999999999998653 47999999987643345677
Q ss_pred EEEEecCC-CCCCCCcHHhHHHH----------HHHHHHHHHHhcCCc--hhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 95 LGYCEQND-IHSPHDTLYDFTHC----------LYMFIEEGMELVELN--PFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 95 igyv~Q~~-~~~~~ltv~e~~~~----------~~~~~~~~l~~l~l~--~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
+||++|++ ..++.+||+|+... ..++++++++.+|+. +..++.+ ||||||+|||||+.+|++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l 159 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDI 159 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99999995 46677999998321 134578899999998 7776665 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+...||++++|++ |+++..|++
T Consensus 160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 222 (266)
T 2yz2_A 160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGTR 222 (266)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEEH
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999877999999999987 46678999999986 999988874
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=310.59 Aligned_cols=188 Identities=21% Similarity=0.262 Sum_probs=160.5
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igy 97 (531)
|+++|++++|+ ++ +|+|+|+.+.+| |||||||||+|+|..++ .+|+|.++|.+... ...++.+||
T Consensus 2 l~~~~l~~~y~--~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWK--NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVTDLSPEKHDIAF 76 (348)
T ss_dssp EEEEEEEEECS--SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECTTSCHHHHTCEE
T ss_pred EEEEEEEEEEC--CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCEECCCCchhhCcEEE
Confidence 57888888884 34 888888777766 99999999999998664 47999999987532 224567999
Q ss_pred EecCCCCCCCCcHHhHHHH--------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCC
Q 042733 98 CEQNDIHSPHDTLYDFTHC--------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPIS 164 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~--------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPts 164 (531)
|+|+..++|++||+|+... ..++++++++.+++.+..++.+ ||||||+|||||+.+|++|+|||||+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s 156 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 9999999999999998321 0156888999999998877766 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 165 GLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 165 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||+..+.++.+.|++++++ |.|+|++|||++ ++..+||++++|++ |+++..|+++
T Consensus 157 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 213 (348)
T 3d31_A 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKPE 213 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999764 999999999976 57788999999986 9999999864
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=301.76 Aligned_cols=192 Identities=23% Similarity=0.366 Sum_probs=160.9
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc-----hhh
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-----QET 90 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-----~~~ 90 (531)
...|+++||+++|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. ...
T Consensus 19 ~~~l~~~~l~~~y~--~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~~~~~~~~~~ 94 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQ--GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKMPGKVGYSAET 94 (279)
T ss_dssp CEEEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTBCCC---CCHHH
T ss_pred CceEEEEeEEEEEC--CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCeEEEECCEEcccccCCHHH
Confidence 44689999999995 457999999887776 99999999999998654 4799999998653 233
Q ss_pred hcceEEEEecCCCCC--CCCcHHhHHH---------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHH
Q 042733 91 FARILGYCEQNDIHS--PHDTLYDFTH---------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAV 148 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~--~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~ 148 (531)
+++.+||++|++.+. +.+||+|+.. ...++++++++.+++.+..++.+ ||||||+|||
T Consensus 95 ~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAr 174 (279)
T 2ihy_A 95 VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIAR 174 (279)
T ss_dssp HHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred HcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHH
Confidence 567799999987543 3569998721 11345778899999988777665 9999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE--EEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 149 EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTV--VCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 149 aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tv--i~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+.+|++|||||||+|||+.+++.+++.|++++++|+|| |++||+++ ++...||++++|++ |++++.|+++
T Consensus 175 aL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 248 (279)
T 2ihy_A 175 ALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGAVE 248 (279)
T ss_dssp HHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEET-TEEEEEEEHH
T ss_pred HHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999999998779999 99999987 46678999999986 9999988764
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=293.79 Aligned_cols=197 Identities=24% Similarity=0.246 Sum_probs=155.8
Q ss_pred cccceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h
Q 042733 22 LFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E 89 (531)
Q Consensus 22 ~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~ 89 (531)
|.....|+++||+++|+ ++.+|+|+|+.+.+| |||||||+|+|+|.....+.+|+|.++|.+... .
T Consensus 15 ~~~~~~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~ 92 (267)
T 2zu0_C 15 PRGSHMLSIKDLHVSVE--DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 92 (267)
T ss_dssp -----CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHH
T ss_pred CCCCceEEEEeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHH
Confidence 33344588888888884 456888888777766 999999999999984212468999999986532 1
Q ss_pred hh-cceEEEEecCCCCCCCCcHHhHHHH------------------HHHHHHHHHHhcCCc-hhhh------ccHHHHHH
Q 042733 90 TF-ARILGYCEQNDIHSPHDTLYDFTHC------------------LYMFIEEGMELVELN-PFRQ------ALFEQRKR 143 (531)
Q Consensus 90 ~~-~~~igyv~Q~~~~~~~ltv~e~~~~------------------~~~~~~~~l~~l~l~-~~~~------~~~GerqR 143 (531)
.. ++.++|++|++.+++.+|+.|+... ...+++++++.+++. +..+ .+.|||||
T Consensus 93 ~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QR 172 (267)
T 2zu0_C 93 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 172 (267)
T ss_dssp HHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHH
T ss_pred HHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHH
Confidence 22 3458999999999999999886211 123567888999985 3433 33499999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhc-cCeEEEEccCceeeecCCCC
Q 042733 144 LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYS-FDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+... ||++++|++ |+++..|+++
T Consensus 173 v~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~-G~i~~~g~~~ 250 (267)
T 2zu0_C 173 NDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-GRIVKSGDFT 250 (267)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-TEEEEEECTT
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999999999999999999998767999999999986 35554 899999986 9999999864
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=291.71 Aligned_cols=191 Identities=21% Similarity=0.247 Sum_probs=151.4
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~ 93 (531)
.++++||+++|+ ++.+|+|+|+.+.+| |||||||+|+|+|.....+.+|+|.++|.+... .. .++
T Consensus 3 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASID--GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEEC--CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 367888888874 356788877766665 999999999999972111468999999987532 12 234
Q ss_pred eEEEEecCCCCCCCCcHHhHHH--------------HHHHHHHHHHHhcCC-chhhhc------cHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH--------------CLYMFIEEGMELVEL-NPFRQA------LFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~--------------~~~~~~~~~l~~l~l-~~~~~~------~~GerqRv~iA~aL~~ 152 (531)
.++|++|++.+++.+||+|+.. ....+++++++.+++ .+..++ +.||||||+|||||+.
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 5899999999999999998721 112456778899999 465554 3399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhc-cCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYS-FDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~-~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+... ||++++|++ |+++..|++
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~~~g~~ 228 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVVATGGP 228 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEEEEESH
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEEEEeCH
Confidence 99999999999999999999999999999767999999999987 45566 599999986 999999875
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=291.15 Aligned_cols=189 Identities=21% Similarity=0.293 Sum_probs=154.4
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++||+++|+.+++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~i~g~~~~~~~~~~~~~ 83 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDLALADPNWLRR 83 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEETTTSCHHHHHH
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhhhCCHHHHHh
Confidence 468999999999422457899999887776 99999999999998654 47999999987532 33566
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~ 152 (531)
.+||++|++.+++ .||+|+.. .....+++.++.+++.+..+ .+.||||||+|||||+.
T Consensus 84 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~ 162 (247)
T 2ff7_A 84 QVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162 (247)
T ss_dssp HEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred cEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc
Confidence 7999999988876 69999831 11234566777777765443 23399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++. + ..||++++|++ |+++..|++
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~ 227 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK-GKIVEQGKH 227 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET-TEEEEEECH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999995 59999999999873 4 45999999986 999998875
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=289.48 Aligned_cols=194 Identities=18% Similarity=0.269 Sum_probs=158.7
Q ss_pred hhhhhcccCCCccccccceEEEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc
Q 042733 8 AIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK 87 (531)
Q Consensus 8 ~i~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~ 87 (531)
+|++++++++ + .++|+++++.. .++.+.+||||||||||+|+|+|..++ . |+|.++|.+..
T Consensus 4 ~l~~~~l~~~----~------vl~~vsl~i~~------Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 4 VMQLQDVAES----T------RLGPLSGEVRA------GEILHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFAGQPLE 64 (249)
T ss_dssp EEEEEEEEET----T------TEEEEEEEEET------TCEEEEECCTTSSHHHHHHHHTTSSCC--E-EEEEETTEEGG
T ss_pred EEEEEceEEE----E------EEeeeEEEEcC------CCEEEEECCCCCcHHHHHHHHhCCCCC--C-eEEEECCEECC
Confidence 4666666654 1 25566666642 245667777799999999999998764 5 99999998653
Q ss_pred ---hhhhcceEEEEecCCCCCCCCcHHhHHHH------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhC
Q 042733 88 ---QETFARILGYCEQNDIHSPHDTLYDFTHC------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVAN 153 (531)
Q Consensus 88 ---~~~~~~~igyv~Q~~~~~~~ltv~e~~~~------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~ 153 (531)
...+++.+||++|++.+++.+||+|+... ..+.++++++.+++.+..++.+ ||||||+|||||+.+
T Consensus 65 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 23356679999999998899999998321 1456788999999988777665 999999999999999
Q ss_pred CC-------eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PS-------IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~-------lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+ +|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...||++++|++ |+++..|+++
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 218 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRRE 218 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEHH
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99 99999999999999999999999999877999999999976 46678999999986 9999988753
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-35 Score=287.96 Aligned_cols=180 Identities=22% Similarity=0.314 Sum_probs=150.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.|+++|++++|+. ++.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|. .++.+||
T Consensus 4 ~l~i~~l~~~y~~-~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~----------~~~~i~~ 70 (253)
T 2nq2_C 4 ALSVENLGFYYQA-ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIE----------VYQSIGF 70 (253)
T ss_dssp EEEEEEEEEEETT-TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC--SEEEEE----------ECSCEEE
T ss_pred eEEEeeEEEEeCC-CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEE----------EeccEEE
Confidence 4678888888841 346788877766555 99999999999998653 368876 2456999
Q ss_pred EecCCCCCCCCcHHhHHH---------------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeE
Q 042733 98 CEQNDIHSPHDTLYDFTH---------------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~---------------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ll 157 (531)
++|++.+++.+||+|+.. ....+++++++.+++.+..++.+ ||||||+|||||+.+|++|
T Consensus 71 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll 150 (253)
T 2nq2_C 71 VPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLI 150 (253)
T ss_dssp ECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEE
T ss_pred EcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999888999998721 12345788899999988776665 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 158 SRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...||++++|++ |+ ++.|+++
T Consensus 151 lLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~~ 213 (253)
T 2nq2_C 151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGETR 213 (253)
T ss_dssp EESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCHH
Confidence 999999999999999999999999876 999999999986 46678999999986 89 8888753
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=297.02 Aligned_cols=190 Identities=21% Similarity=0.265 Sum_probs=154.9
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
...|+++||+|+|+. .+.+|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..++
T Consensus 51 ~~~i~~~~vs~~y~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~G~~i~~~~~~~~r 127 (306)
T 3nh6_A 51 KGRIEFENVHFSYAD-GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQDISQVTQASLR 127 (306)
T ss_dssp SCCEEEEEEEEESST-TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC--SEEEEEETTEETTSBCHHHHH
T ss_pred CCeEEEEEEEEEcCC-CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCcEEEECCEEcccCCHHHHh
Confidence 346899999999963 457999999998887 99999999999998664 47999999987642 3467
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhh----------------hccHHHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFR----------------QALFEQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~----------------~~~~GerqRv~iA~aL~ 151 (531)
+.+|||+|++.+++ .||+|+.. .....++++++..++.+.. +.+.||||||+|||||+
T Consensus 128 ~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~ 206 (306)
T 3nh6_A 128 SHIGVVPQDTVLFN-DTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL 206 (306)
T ss_dssp HTEEEECSSCCCCS-EEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred cceEEEecCCccCc-ccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 78999999998874 69999821 1123345555555554432 22339999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
.+|++|||||||+|||+.++..+.+.|+++.+ ++|+|+++|+++. +. .||+|++|++ |+++..|+++
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~~-~aD~i~vl~~-G~iv~~G~~~ 273 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-VV-NADQILVIKD-GCIVERGRHE 273 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-HH-TCSEEEEEET-TEEEEEECHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-HH-cCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999999999999999864 7899999999873 44 4999999996 9999999863
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-35 Score=290.88 Aligned_cols=189 Identities=18% Similarity=0.239 Sum_probs=151.6
Q ss_pred EEEEEeEEEEEeC-CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 27 YISLNEIVYSVDM-PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~-~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
.|+++||+++|+. +.+.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEGGGBCHHHHHH
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEcccCCHHHHhc
Confidence 5899999999953 1257999999888777 99999999999998654 47999999987532 23466
Q ss_pred eEEEEecCCCCCCCCcHHhHHH----------HHH-----HHHHHHHHhc--CCchhhhcc-----HHHHHHHHHHHHHh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH----------CLY-----MFIEEGMELV--ELNPFRQAL-----FEQRKRLTVAVEFV 151 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~----------~~~-----~~~~~~l~~l--~l~~~~~~~-----~GerqRv~iA~aL~ 151 (531)
.+||++|++.+++ .||+|+.. ... ..+++.++.+ |+....++. .||||||+|||||+
T Consensus 94 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 94 QVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp HEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred cEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 7999999988876 59999721 110 1133455555 555444433 39999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||+++. + ..||++++|++ |+++..|++
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~-~~~d~v~~l~~-G~i~~~g~~ 240 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-A-ERAHHILFLKE-GSVCEQGTH 240 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-H-TTCSEEEEEET-TEEEEEECH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999865 48999999999763 4 45999999986 999998875
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=282.02 Aligned_cols=178 Identities=16% Similarity=0.232 Sum_probs=148.7
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.|+++|++++|+ + ++|+++|+.+.+| |||||||||+|+|..++ .+|+|.++|.+.. ..++.++|
T Consensus 10 ~l~~~~ls~~y~--~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~~--~~~~~i~~ 82 (214)
T 1sgw_A 10 KLEIRDLSVGYD--K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPIT--KVKGKIFF 82 (214)
T ss_dssp EEEEEEEEEESS--S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEGG--GGGGGEEE
T ss_pred eEEEEEEEEEeC--C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEhh--hhcCcEEE
Confidence 468889988885 3 6888888777666 99999999999998653 4799999998764 35678999
Q ss_pred EecCCCCCCCCcHHhHHHH---------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCC
Q 042733 98 CEQNDIHSPHDTLYDFTHC---------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPI 163 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~---------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPt 163 (531)
++|++.+++.+||+|+... ....++++++.+++.+. ++.+ ||||||+||+||+.+|++|+|||||
T Consensus 83 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 83 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred EeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 9999999999999998321 13467888999999876 5554 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCcee
Q 042733 164 SGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~ 215 (531)
+|||+.++..+++.|++++++|+|||++||+++ ++...+|+++++. |++
T Consensus 162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~--~~~ 210 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS--TKI 210 (214)
T ss_dssp TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB--C--
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC--Ccc
Confidence 999999999999999999877899999999987 4667788887653 554
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=283.70 Aligned_cols=188 Identities=21% Similarity=0.288 Sum_probs=152.4
Q ss_pred eEEEEEeEEEEEeCCC-ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 26 HYISLNEIVYSVDMPQ-IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~-~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
..|+++||+++|+... +.+|+|+|+.+.+| |||||||+|+|+|..++ +|+|.++|.+... ..++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~G~I~i~g~~i~~~~~~~~~ 92 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKIGGKNVNKYNRNSIR 92 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---EEEEEETTEEGGGBCHHHHH
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC---CeEEEECCEEhhhcCHHHHh
Confidence 3589999999996322 46999999888777 99999999999998752 6999999987532 3356
Q ss_pred ceEEEEecCCCCCCCCcHHhHHHH-----HHHHHHHHHHhcCCchhh----------------hccHHHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTHC-----LYMFIEEGMELVELNPFR----------------QALFEQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~~-----~~~~~~~~l~~l~l~~~~----------------~~~~GerqRv~iA~aL~ 151 (531)
+.+||++|++.+++ .||+|+... ....+.+.++.+++.+.. +.+.||||||+|||||+
T Consensus 93 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 93 SIIGIVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp TTEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred ccEEEEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 77999999998875 699998321 123455666666664432 22349999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
.+|++|+|||||+|||+.++..+++.|+++++ |+|||++||+++. + ..||++++|++ |+++..|++
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~-G~i~~~g~~ 237 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK-GKIVEKGTH 237 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-TEEEEEECH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999864 8999999999873 4 45999999986 999998875
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=287.28 Aligned_cols=186 Identities=24% Similarity=0.358 Sum_probs=151.8
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~i 95 (531)
++++|++++|+ +++.+|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++.+
T Consensus 2 l~~~~l~~~y~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i 78 (243)
T 1mv5_A 2 LSARHVDFAYD-DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPIDNISLENWRSQI 78 (243)
T ss_dssp EEEEEEEECSS-SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEESTTTSCSCCTTTC
T ss_pred EEEEEEEEEeC-CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhhhCCHHHHHhhE
Confidence 67888988884 2356888888887776 99999999999998653 36899999976532 2346679
Q ss_pred EEEecCCCCCCCCcHHhHHH------HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhhC
Q 042733 96 GYCEQNDIHSPHDTLYDFTH------CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~------~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~~ 153 (531)
||++|++.+++ .||+|+.. .....+++.++.+++.+..+ .+.||||||+|||||+++
T Consensus 79 ~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~ 157 (243)
T 1mv5_A 79 GFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (243)
T ss_dssp CEECCSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEcCCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcC
Confidence 99999998876 59999721 11344677788888766543 233999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++ .+ ..||++++|++ |+++..|++
T Consensus 158 p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~i~~~g~~ 221 (243)
T 1mv5_A 158 PKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEK-GQITGSGKH 221 (243)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEET-TEECCCSCH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999987 6999999999976 34 46999999986 999988875
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=299.82 Aligned_cols=190 Identities=15% Similarity=0.186 Sum_probs=160.6
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
...|+++||+++|+.+++.+|+|+|+.+.+| |||||||||+|+|..+ .+|+|.++|.+... ..++
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBTTSSCHHHHH
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEECCcCChHHHh
Confidence 3468999999999654568999999998877 9999999999999864 47999999987542 3456
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH----HHHHHHHHHHHhcCCchhhhc----------------cHHHHHHHHHHHHHhh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH----CLYMFIEEGMELVELNPFRQA----------------LFEQRKRLTVAVEFVA 152 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~----~~~~~~~~~l~~l~l~~~~~~----------------~~GerqRv~iA~aL~~ 152 (531)
+.+|||+|++.+++ .||+|+.. ...++++++++.+++.+..++ +.||||||+|||||+.
T Consensus 94 r~ig~v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 94 KAFGVIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp HTEEEESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 78999999999887 69999832 123457788999998776543 4499999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|++|||||||+|||+..+.++.+.|+++. +++|+|++||+.+ ....|||+++|++ |+++..|+++
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~-G~i~~~g~~~ 238 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE-NKVRQYDSIL 238 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-TEEEEESSHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999998864 4899999999975 4556999999996 9999999874
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=279.05 Aligned_cols=184 Identities=16% Similarity=0.180 Sum_probs=150.1
Q ss_pred EEEEeEEEEEeCC--CccccccEEEEEc--------CCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE-
Q 042733 28 ISLNEIVYSVDMP--QIGDLNSLSGAFR--------PGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG- 96 (531)
Q Consensus 28 l~~~~ls~~~~~~--~~~iL~~vs~~i~--------~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig- 96 (531)
++++|++++|+.. .+.+|+++|+.+. |||||||||+|+|+|.. + .+|+|.++|.+......++.+|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGGGCSCCTTEEE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECcchHHhhheEE
Confidence 5777888777521 1457777776665 44999999999999987 4 4799999997653211256799
Q ss_pred EEecCCCCCCCCcHHhHHHH-------HHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCC
Q 042733 97 YCEQNDIHSPHDTLYDFTHC-------LYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVEFVANPSIISRDEPI 163 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~~-------~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPt 163 (531)
|++|++.+ .+||+|+... ...++++.++.+++. +..++.+ ||||||+|||||+.+|++|+|||||
T Consensus 79 ~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 156 (263)
T 2pjz_A 79 NLPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPF 156 (263)
T ss_dssp CCGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred EeCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 99999876 8999998321 134578899999998 7776655 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccC-eEEEEccCceeeecCCC
Q 042733 164 SGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFD-ELFLLKQVGQEISVGPL 221 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d-~v~lL~~~G~~v~~G~~ 221 (531)
+|||+.++..+.+.|+++++ |||++||+++ ++...|| ++++|++ |+++..|++
T Consensus 157 s~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~~ 210 (263)
T 2pjz_A 157 ENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPISV 210 (263)
T ss_dssp TTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEEH
T ss_pred cccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecCH
Confidence 99999999999999998753 9999999987 4667899 9999986 999999875
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=271.27 Aligned_cols=178 Identities=17% Similarity=0.216 Sum_probs=138.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.|+++|++++|+.+++++|+++|+.+.+| |||||||+|+|+|..++ .+|+|.++| .++|
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g----------~i~~ 73 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG----------RISF 73 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEECS----------CEEE
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CccEEEECC----------EEEE
Confidence 47888888888533456888888777665 99999999999998653 479999987 3899
Q ss_pred EecCCCCCCCCcHHhHHHH----HHHHHHHHHHhcCCchh----------------hhccHHHHHHHHHHHHHhhCCCeE
Q 042733 98 CEQNDIHSPHDTLYDFTHC----LYMFIEEGMELVELNPF----------------RQALFEQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~----~~~~~~~~l~~l~l~~~----------------~~~~~GerqRv~iA~aL~~~p~ll 157 (531)
++|++.+++. ||+|+... .....++.++.+++.+. .+.+.||||||+|||||+.+|+++
T Consensus 74 v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ll 152 (229)
T 2pze_A 74 CSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 152 (229)
T ss_dssp ECSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred EecCCcccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999988875 99998321 01123334444444322 233349999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHH-HHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 158 SRDEPISGLDARAATTVIRM-VRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~-L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||||+|||+.++..+++. ++++. +|+|||++||+++ .+ ..||++++|++ |+++..|++
T Consensus 153 lLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~i~~~g~~ 213 (229)
T 2pze_A 153 LLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GSSYFYGTF 213 (229)
T ss_dssp EEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEET-TEEEEEECH
T ss_pred EEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999997 45554 4899999999976 34 45999999986 999998875
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=268.11 Aligned_cols=177 Identities=19% Similarity=0.288 Sum_probs=137.7
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYC 98 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv 98 (531)
++++|++++|+..++.+|+++|+.+.+| |||||||+|+|+|..+ +.+|+|.++| .+||+
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g----------~i~~v 71 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG----------SVAYV 71 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----------CEEEE
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----------EEEEE
Confidence 6888888888532456888888777666 9999999999999876 3689999988 38999
Q ss_pred ecCCCCCCCCcHHhHHHHH----HHHHHHHHHhcCCch----------------hhhccHHHHHHHHHHHHHhhCCCeEE
Q 042733 99 EQNDIHSPHDTLYDFTHCL----YMFIEEGMELVELNP----------------FRQALFEQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 99 ~Q~~~~~~~ltv~e~~~~~----~~~~~~~l~~l~l~~----------------~~~~~~GerqRv~iA~aL~~~p~lll 158 (531)
+|++. ++..||+|+.... ....+++++.+++.+ ..+.+.||||||+|||||+.+|++|+
T Consensus 72 ~Q~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll 150 (237)
T 2cbz_A 72 PQQAW-IQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYL 150 (237)
T ss_dssp CSSCC-CCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cCCCc-CCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99976 4688999983210 111223333332211 12233499999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHH---HHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 159 RDEPISGLDARAATTVIRMVR---NTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~---~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|||||+|||+.++..+++.|+ +++ +|+|||++||+++. + ..||++++|++ |+++..|++
T Consensus 151 LDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~ 212 (237)
T 2cbz_A 151 FDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-GKISEMGSY 212 (237)
T ss_dssp EESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-TEEEEEECH
T ss_pred EeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-CEEEEeCCH
Confidence 999999999999999999985 343 48999999999874 4 46999999986 999998875
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-33 Score=304.74 Aligned_cols=190 Identities=19% Similarity=0.253 Sum_probs=158.5
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~ 93 (531)
..++++|++++|+.+++++|+|+|+.+++| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHDVRDYKLTNLRR 417 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEhhhCCHHHHhc
Confidence 469999999999643367999999998887 99999999999998653 4689999998753 234677
Q ss_pred eEEEEecCCCCCCCCcHHhHHH------HHHHHHHHHHHhcCCchhhhc----------------cHHHHHHHHHHHHHh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH------CLYMFIEEGMELVELNPFRQA----------------LFEQRKRLTVAVEFV 151 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~------~~~~~~~~~l~~l~l~~~~~~----------------~~GerqRv~iA~aL~ 151 (531)
.+|||+|++.+++ .|++|+.. ...+.++++++.+++.+..++ +.|||||++|||||+
T Consensus 418 ~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 418 HFALVSQNVHLFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496 (582)
T ss_pred CeEEEcCCCcccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence 8999999998886 59999832 123456778888887655432 239999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|++++|||||+|||+.+++.+.+.|+++.+ |+|+|+++|+++. + +.||++++|++ |+++..|+++
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~-G~i~~~g~~~ 563 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST-I-EQADEILVVDE-GEIIERGRHA 563 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999999999999999864 8999999999863 3 57999999986 9999999863
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=302.22 Aligned_cols=189 Identities=18% Similarity=0.230 Sum_probs=158.7
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++|++++|+.+++++|+|+|+.+++| |||||||+|+|+|..++ .+|+|.++|.+... ..+++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDLREYTLASLRN 417 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEETTTBCHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC--CCCeEEECCEEccccCHHHHHh
Confidence 458999999999633367999999999888 99999999999998664 47999999987532 34667
Q ss_pred eEEEEecCCCCCCCCcHHhHHHH------HHHHHHHHHHhcCCchhhhc----------------cHHHHHHHHHHHHHh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTHC------LYMFIEEGMELVELNPFRQA----------------LFEQRKRLTVAVEFV 151 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~~------~~~~~~~~l~~l~l~~~~~~----------------~~GerqRv~iA~aL~ 151 (531)
.+||++|++.+++ .|++|+... ..+.++++++.+++.+..++ +.|||||++|||||+
T Consensus 418 ~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 418 QVALVSQNVHLFN-DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp TEEEECSSCCCCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred hCeEEccCCcCCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 8999999998887 599998321 23457778888887655432 239999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|++++|||||+|||+.+++.+.+.++++.+ |+|+|+++|+++. .+.||++++|++ |+++..|++
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~-G~i~~~g~~ 562 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVED-GIIVERGTH 562 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEET-TEEEEEECH
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999865 8999999999873 357999999986 999999985
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=302.06 Aligned_cols=190 Identities=20% Similarity=0.299 Sum_probs=155.9
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++|++++|+.+++++|+|+|+.+++| |||||||+|+|+|..++ .+|+|.++|.+... ..+++
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEEGGGSCHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEEhhhCCHHHHhh
Confidence 469999999999755568999999998887 99999999999998764 47999999987643 34677
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhh----------------hccHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFR----------------QALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~----------------~~~~GerqRv~iA~aL~~ 152 (531)
.+|||+|++.+++. |++|+.. ...+.+.+.++..++.+.. +.+.|||||++|||||++
T Consensus 416 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 416 QIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp TEEEECSSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred heEEEeCCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 89999999988865 9999821 1123345555555554322 223399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|++++|||||+|||+.+++.+.+.++++. +++|+|+++|+++. + ..||++++|++ |+++..|+++
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~-G~i~~~g~~~ 560 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIEN-GHIVETGTHR 560 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEET-TEEEEEECHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999885 47999999999874 4 56999999996 9999999863
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-32 Score=302.36 Aligned_cols=191 Identities=16% Similarity=0.225 Sum_probs=154.9
Q ss_pred ceEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 25 PHYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
...++++|++++|+.+++++|+|+|+.+++| |||||||+|+|+|..++ .+|+|.++|.+... ..++
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~i~g~~i~~~~~~~~r 416 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDELDVRTVKLKDLR 416 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC--SEEEEEESSSBGGGBCHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEECCEEcccCCHHHHH
Confidence 3469999999999755678999999999887 99999999999998764 47999999988643 3467
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhh----------------hccHHHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFR----------------QALFEQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~----------------~~~~GerqRv~iA~aL~ 151 (531)
+.+|||+|++.+++ .|++|+.. ...+.+.+.++..++.+.. +.+.|||||++|||||+
T Consensus 417 ~~i~~v~Q~~~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 417 GHISAVPQETVLFS-GTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp HHEEEECSSCCCCS-EEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred hheEEECCCCcCcC-ccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 78999999998875 59999821 1112233444444433221 22339999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|++|+|||||++||+.+++++.+.|+++. +|+|+|+++|+++. ...||++++|++ |+++..|+++
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~-G~i~~~g~~~ 562 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHE-GKVAGFGTHK 562 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEET-TEEEEEECHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999874 58999999999863 458999999996 9999999864
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.8e-32 Score=300.33 Aligned_cols=189 Identities=23% Similarity=0.330 Sum_probs=155.3
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
..++++|++++|+. ++++|+|+|+.+++| |||||||+|+|+|..++ .+|+|.++|.+... ..+++
T Consensus 353 ~~i~~~~v~~~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~i~~~~~~~~r~ 429 (598)
T 3qf4_B 353 GEIEFKNVWFSYDK-KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGIDIRKIKRSSLRS 429 (598)
T ss_dssp CCEEEEEEECCSSS-SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTEEGGGSCHHHHHH
T ss_pred CeEEEEEEEEECCC-CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCEEhhhCCHHHHHh
Confidence 46999999999963 457999999988877 99999999999998764 47999999987643 35677
Q ss_pred eEEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhhh----------------ccHHHHHHHHHHHHHhh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFRQ----------------ALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~~----------------~~~GerqRv~iA~aL~~ 152 (531)
.+|||+|++.+++ .|++|+.. ...+.+.+.++..++.+..+ .+.|||||++|||||++
T Consensus 430 ~i~~v~Q~~~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~ 508 (598)
T 3qf4_B 430 SIGIVLQDTILFS-TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA 508 (598)
T ss_dssp HEEEECTTCCCCS-SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEeCCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 8999999998875 59999832 11233555666655544322 23399999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|++|+|||||++||+.++..+.+.|+++. +|+|+|+++|+++. + ..||++++|++ |+++..|+++
T Consensus 509 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~-G~i~~~g~~~ 574 (598)
T 3qf4_B 509 NPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRD-GEIVEMGKHD 574 (598)
T ss_dssp CCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECS-SSEEECSCHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999985 58999999999984 4 45999999986 9999999863
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=262.01 Aligned_cols=176 Identities=18% Similarity=0.240 Sum_probs=131.0
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..++++|+++.+ +.+|+++|+.+.+| |||||||+|+|+|..+ +.+|+|.++| .++
T Consensus 39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g----------~i~ 102 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RIS 102 (290)
T ss_dssp -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS----------CEE
T ss_pred ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC----------EEE
Confidence 458889998752 46899999888777 9999999999999876 3689999987 389
Q ss_pred EEecCCCCCCCCcHHhHHHHH---HHHHHHHHHhcCCchh----------------hhccHHHHHHHHHHHHHhhCCCeE
Q 042733 97 YCEQNDIHSPHDTLYDFTHCL---YMFIEEGMELVELNPF----------------RQALFEQRKRLTVAVEFVANPSII 157 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~~~~~---~~~~~~~l~~l~l~~~----------------~~~~~GerqRv~iA~aL~~~p~ll 157 (531)
|++|++.+++. ||+|+.... ....++.++.+++.+. .+.+.||||||+|||||+.+|++|
T Consensus 103 ~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ll 181 (290)
T 2bbs_A 103 FCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 181 (290)
T ss_dssp EECSSCCCCSS-BHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEE
T ss_pred EEeCCCccCcc-cHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEE
Confidence 99999888774 999984310 1123344455555332 123349999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH-HHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 158 SRDEPISGLDARAATTVIRMV-RNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 158 lLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||+|||+.++..+++.+ ++++ +|+|||++||+++ .+ ..||++++|++ |+++..|+++
T Consensus 182 lLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~-G~i~~~g~~~ 243 (290)
T 2bbs_A 182 LLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GSSYFYGTFS 243 (290)
T ss_dssp EEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEET-TEEEEEECHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEEC-CeEEEeCCHH
Confidence 999999999999999999974 4554 4899999999976 34 46999999986 9999999863
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-30 Score=309.93 Aligned_cols=190 Identities=22% Similarity=0.285 Sum_probs=158.2
Q ss_pred eEEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 26 HYISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
-.|+++||+++|+.+ +.++|+|+|+.++|| |||||||+++|.|..++ .+|+|.++|.+..+ ..+|
T Consensus 1075 g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT--LGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp CCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC--SSSEEEETTEETTTBCHHHHH
T ss_pred CeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC--CCCEEEECCEEhhhCCHHHHH
Confidence 369999999999743 447999999999998 99999999999998653 36899999988643 5688
Q ss_pred ceEEEEecCCCCCCCCcHHhHH-------HHHHHHHHHHHHhcCCchhhh-------c---------cHHHHHHHHHHHH
Q 042733 93 RILGYCEQNDIHSPHDTLYDFT-------HCLYMFIEEGMELVELNPFRQ-------A---------LFEQRKRLTVAVE 149 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~-------~~~~~~~~~~l~~l~l~~~~~-------~---------~~GerqRv~iA~a 149 (531)
+.++||||++.++. -|++||. ....+.+.++++..++.+... + +.|||||++||||
T Consensus 1153 ~~i~~V~Qdp~LF~-gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1153 SQIAIVSQEPTLFD-CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp TTEEEECSSCCCCS-EEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred hheEEECCCCEeeC-ccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 99999999998875 6999982 112345667777777654322 2 2289999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+++|+||+||||||+||+.+.+.+.+.|+++. +|+|+|+++|.++. ...||+|++|++ |+++..|+++
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~-G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSN-GTIIEKGTHT 1300 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESS-SSEEEEECHH
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999998764 48999999999873 567999999986 9999999973
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-30 Score=304.26 Aligned_cols=190 Identities=22% Similarity=0.302 Sum_probs=158.9
Q ss_pred eEEEEEeEEEEEeC-CCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 26 HYISLNEIVYSVDM-PQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~-~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
..|+++|++|+|+. +++++|+|+|+.++|| |||||||+++|.|..++ .+|+|.++|.+.++ ..+|
T Consensus 414 g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~--~~G~I~idG~~i~~~~~~~lr 491 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV--LKGKITIDGVDVRDINLEFLR 491 (1321)
T ss_dssp CCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC--SEEEEEETTEETTTSCHHHHH
T ss_pred CcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc--ccCcccCCCccchhccHHHHh
Confidence 46999999999975 3468999999999999 99999999999998764 47999999987643 4578
Q ss_pred ceEEEEecCCCCCCCCcHHhHH-----HHHHHHHHHHHHhcCCchhhhc-------c---------HHHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFT-----HCLYMFIEEGMELVELNPFRQA-------L---------FEQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~-----~~~~~~~~~~l~~l~l~~~~~~-------~---------~GerqRv~iA~aL~ 151 (531)
+.+|||+|++.++ +.|++||. ....+.+.++++..++.+..+. . .|||||++||||++
T Consensus 492 ~~i~~v~Q~~~Lf-~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~ 570 (1321)
T 4f4c_A 492 KNVAVVSQEPALF-NCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570 (1321)
T ss_dssp HHEEEECSSCCCC-SEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred hcccccCCcceee-CCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence 8999999999876 57999982 1223456666666665443322 2 28999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|++++||||||+||+.+.+.+.+.|+++. +|+|+|+++|+++ ....||+|++|++ |+++..|+.+
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~~-G~ive~Gth~ 637 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCKN-GQVVEVGDHR 637 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEET-TEEEEEECHH
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEeeC-CeeeccCCHH
Confidence 9999999999999999999999999999876 4899999999987 3678999999986 9999999864
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=298.77 Aligned_cols=190 Identities=21% Similarity=0.282 Sum_probs=152.7
Q ss_pred eEEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 26 HYISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
..|+++|++++|+.. +.++|+|+|+.++|| |||||||+|+|+|..++ .+|+|.++|.+... ..++
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~--~~G~i~i~g~~i~~~~~~~~r 463 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP--LDGMVSIDGQDIRTINVRYLR 463 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC--SEEEEEETTEEGGGSCHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEHHhCCHHHHH
Confidence 468999999999743 347999999999888 99999999999998764 47999999987543 4567
Q ss_pred ceEEEEecCCCCCCCCcHHhHHHH-----HHHHHHHHHHhcCCchh----------------hhccHHHHHHHHHHHHHh
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTHC-----LYMFIEEGMELVELNPF----------------RQALFEQRKRLTVAVEFV 151 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~~-----~~~~~~~~l~~l~l~~~----------------~~~~~GerqRv~iA~aL~ 151 (531)
+.+|||+|++.+++. |++|+... ..+.+.+.++..++.+. .+.+.|||||++|||||+
T Consensus 464 ~~i~~v~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 464 EIIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp HHEEEECSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred hheEEEcCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 789999999988865 99998321 12233444444333221 122349999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|++|+||||||+||+.+.+.+.+.++++. +|+|+|+++|+++ .+ ..||+|++|++ |++++.|+.+
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~i-~~~d~i~vl~~-G~i~~~g~~~ 609 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS-TV-RNADVIAGFDG-GVIVEQGNHD 609 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH-HH-TTCSEEEECSS-SCCCCEECHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999998764 5899999999986 34 55999999986 9999999864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=271.15 Aligned_cols=183 Identities=20% Similarity=0.253 Sum_probs=148.6
Q ss_pred ceEEEEEeEEEEEeCCCccccc---------cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 25 PHYISLNEIVYSVDMPQIGDLN---------SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~---------~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
...++++|+++.|+. ..|+ ++.+.+||||||||||+|+|+|..++ .+|+|.+ .+.+
T Consensus 355 ~~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----------~~~i 419 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----------DLTV 419 (607)
T ss_dssp CEEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC----------CCCE
T ss_pred ceEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE----------eeEE
Confidence 457999999998852 2344 46678888899999999999997543 2355543 2468
Q ss_pred EEEecCCCCCCCCcHHhHHHHH-------HHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTHCL-------YMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPI 163 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~~-------~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPt 163 (531)
||++|+....+.+||.|+.... ...++++++.+++.+..++.+ ||||||+||++|+++|++|+|||||
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt 499 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS 499 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 9999998777889998863211 235678899999987777665 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEcc-CceeeecCCCCC
Q 042733 164 SGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQ-VGQEISVGPLGP 223 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~-~G~~v~~G~~~~ 223 (531)
+|||+.++..+.+.|+++++ +|.|||++|||++ .+...|||+++|++ .|+++..|++++
T Consensus 500 ~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 500 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 99999999999999999975 5999999999987 56778999999973 267777888753
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-29 Score=294.22 Aligned_cols=189 Identities=23% Similarity=0.306 Sum_probs=152.1
Q ss_pred eEEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhc
Q 042733 26 HYISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~ 92 (531)
..++++||+++|+.. +.++|+|+|+.++|| |||||||+++|+|..++ .+|+|.++|.+... ..+|
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p--~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC--SEEEEESSSSCTTSSCHHHHT
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEEcccCCHHHHH
Confidence 468999999999642 246999999998887 99999999999998664 47999999987642 4567
Q ss_pred ceEEEEecCCCCCCCCcHHhHHH-------HHHHHHHHHHHhcCCchhh----------------hccHHHHHHHHHHHH
Q 042733 93 RILGYCEQNDIHSPHDTLYDFTH-------CLYMFIEEGMELVELNPFR----------------QALFEQRKRLTVAVE 149 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~~-------~~~~~~~~~l~~l~l~~~~----------------~~~~GerqRv~iA~a 149 (531)
+.+|||+|++.++ ..|++|+.. ...+.+.+.++..++.+.. +.+.||||||+||||
T Consensus 1107 ~~i~~v~Q~~~l~-~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1107 AQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp TSCEEEESSCCCC-SSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred hceEEECCCCccc-cccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 8899999998766 579999821 1122334444444443221 223399999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+++|++|+|||||+|||+.+++.+.+.|++. .+|+|+|+++|+++. + ..||||++|++ |+++..|++
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~-G~i~~~g~~ 1253 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQN-GKVKEHGTH 1253 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEET-BEEEEEECH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999885 458999999999984 4 56999999996 999999986
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-28 Score=264.48 Aligned_cols=183 Identities=20% Similarity=0.252 Sum_probs=148.2
Q ss_pred ceEEEEEeEEEEEeCCCccccc---------cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 25 PHYISLNEIVYSVDMPQIGDLN---------SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~---------~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
...++++|+++.|+. ..|+ ++.+.+||||||||||+|+|+|..++ .+|+|.+ ...+
T Consensus 285 ~~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----------~~~i 349 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----------DLTV 349 (538)
T ss_dssp CEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC----------CCCE
T ss_pred CeEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE----------CceE
Confidence 457999999998842 2344 46677888899999999999997553 2455543 2458
Q ss_pred EEEecCCCCCCCCcHHhHHHHH-------HHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTHCL-------YMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPI 163 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~~-------~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPt 163 (531)
||++|+....+.+||.++.... ...++++++.+++.+..++.+ ||||||+||++|+.+|++|+|||||
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt 429 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS 429 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 9999998777889998763211 234677888999987766665 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEcc-CceeeecCCCCC
Q 042733 164 SGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQ-VGQEISVGPLGP 223 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~-~G~~v~~G~~~~ 223 (531)
+|||+.++..+.+.|+++++ .|.|||++|||++ ++...|||+++|++ .|+++..|++++
T Consensus 430 ~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 430 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 99999999999999999974 5999999999987 57778999999973 267778898853
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=260.66 Aligned_cols=196 Identities=17% Similarity=0.207 Sum_probs=150.3
Q ss_pred ceEEEEEeEEEEEeCCCccccc---------cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceE
Q 042733 25 PHYISLNEIVYSVDMPQIGDLN---------SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARIL 95 (531)
Q Consensus 25 ~~~l~~~~ls~~~~~~~~~iL~---------~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~i 95 (531)
...++++|+++.|+. ..|+ .+.+.+||||||||||+|+|+|..++ .+|+|.+++ +.+
T Consensus 267 ~~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~---------~~i 332 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEK---------QIL 332 (538)
T ss_dssp CEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSC---------CCE
T ss_pred cceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC---------eee
Confidence 356899999998852 2333 46778888899999999999997653 357776543 358
Q ss_pred EEEecCCCCCCCCcHHhHHHH--------HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCC
Q 042733 96 GYCEQNDIHSPHDTLYDFTHC--------LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEP 162 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~~--------~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEP 162 (531)
+|++|+....+..||.++... ....++++++.+++.+..++.+ ||||||+|||||+.+|++||||||
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEP 412 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQP 412 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999998776678899987322 1234677888899887777665 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEcc-CceeeecCCCCCCchhHHHHHHhh
Q 042733 163 ISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQ-VGQEISVGPLGPSSIHLISYFEKI 235 (531)
Q Consensus 163 tsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~-~G~~v~~G~~~~~~~~~~~~f~~~ 235 (531)
|+|||+.++..+++.|+++++ .|.|||++|||++ ++..+|||+++|++ .|+....+++.........++..+
T Consensus 413 T~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 413 SSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHHhhc
Confidence 999999999999999999986 5999999999987 57778999999973 133444455433222333444443
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-27 Score=258.62 Aligned_cols=165 Identities=15% Similarity=0.116 Sum_probs=134.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHH-------HHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHC-------LYM 119 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~-------~~~ 119 (531)
.+.+.+||||||||||+|+|+|..++. +|+ .. .+..++|++|+.......||+++... ...
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~------~~----~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~ 446 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPD--EGQ------DI----PKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQ 446 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCS--BCC------CC----CSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC--CCc------Cc----cCCcEEEecccccccCCccHHHHHHHHhhcccccHH
Confidence 466788899999999999999976531 232 11 13458999998776667799886221 123
Q ss_pred HHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEec
Q 042733 120 FIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIH 193 (531)
Q Consensus 120 ~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H 193 (531)
.++++++.+++.+..++.+ ||||||+|||+|+.+|++|+|||||+|||+.++..++++|+++++ +|.|||++||
T Consensus 447 ~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtH 526 (608)
T 3j16_B 447 FQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526 (608)
T ss_dssp HHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECS
T ss_pred HHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 5677889999988777665 999999999999999999999999999999999999999999874 5999999999
Q ss_pred CCchHHHhccCeEEEEcc-CceeeecCCCCCC
Q 042733 194 QPSIDIFYSFDELFLLKQ-VGQEISVGPLGPS 224 (531)
Q Consensus 194 ~~~~~i~~~~d~v~lL~~-~G~~v~~G~~~~~ 224 (531)
|++ ++...|||+++|++ .|+++..|+|++.
T Consensus 527 dl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~ 557 (608)
T 3j16_B 527 DFI-MATYLADKVIVFEGIPSKNAHARAPESL 557 (608)
T ss_dssp CHH-HHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred CHH-HHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence 987 57788999999974 2789999998653
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-27 Score=257.76 Aligned_cols=180 Identities=21% Similarity=0.196 Sum_probs=133.1
Q ss_pred EEE-EeEEEEEeCCCccccccEE--------EEEcCCCchHHHHHHHHhCCCCCceEEEEE---------EEcCcccch-
Q 042733 28 ISL-NEIVYSVDMPQIGDLNSLS--------GAFRPGGAGKTTLMDVLAGRKPGGYITRNI---------TVSGYPEKQ- 88 (531)
Q Consensus 28 l~~-~~ls~~~~~~~~~iL~~vs--------~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i---------~~~g~~~~~- 88 (531)
.++ +||+++|+. ...+|+++| +.+||||||||||+|+|+|..++ .+|++ .++|.+...
T Consensus 21 ~~~~~~ls~~yg~-~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p--~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGV-NAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIP--NLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECST-TCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECC-ccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCccCcchhhhHHhhCCccHHHH
Confidence 355 488888852 123666664 56677799999999999996432 12332 234543321
Q ss_pred --h--hhcceEEEEecCCCCCCC---CcHHhHHHHH--HHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 89 --E--TFARILGYCEQNDIHSPH---DTLYDFTHCL--YMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 89 --~--~~~~~igyv~Q~~~~~~~---ltv~e~~~~~--~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
. ..+..+++++|+....+. .|+.++.... ..+++++++.+|+.+..++.+ ||||||+||+||+.+|
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P 177 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNA 177 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 1 112357899887544332 3777653211 235788999999987766655 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
++|||||||+|||+.++..+.+.|++++++|.|||++||+++ .+...||++++|++
T Consensus 178 ~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 178 TFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVVYG 233 (538)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEE
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcC
Confidence 999999999999999999999999999888999999999976 57778999999974
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-27 Score=260.50 Aligned_cols=177 Identities=21% Similarity=0.199 Sum_probs=133.6
Q ss_pred EeEEEEEeCCCccccccEE--------EEEcCCCchHHHHHHHHhCCCCCceEEEEE---------EEcCcccch---h-
Q 042733 31 NEIVYSVDMPQIGDLNSLS--------GAFRPGGAGKTTLMDVLAGRKPGGYITRNI---------TVSGYPEKQ---E- 89 (531)
Q Consensus 31 ~~ls~~~~~~~~~iL~~vs--------~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i---------~~~g~~~~~---~- 89 (531)
+|++++|+. ...+|+++| +.+||||||||||||+|+|..++ .+|++ .++|.+... .
T Consensus 95 ~~ls~~yg~-~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p--~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGV-NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIP--NLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp GSEEEECST-TCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCC--CTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECC-CCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCC--CCCccccccchhhheeCCEehhhhhhhh
Confidence 788998853 113666554 66777799999999999996532 12332 234544321 0
Q ss_pred -hhcceEEEEecCCCCCC---CCcHHhHHHHH--HHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEE
Q 042733 90 -TFARILGYCEQNDIHSP---HDTLYDFTHCL--YMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 90 -~~~~~igyv~Q~~~~~~---~ltv~e~~~~~--~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lll 158 (531)
..+..+++++|.....+ ..||.|+.... ..+++++++.+|+.+..++.+ ||||||+||+||+.+|++|+
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLl 251 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYF 251 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 11345788888643322 23887763211 235788999999988777765 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
|||||+|||+.++..+.+.|++++++|.|||++|||++ .+...+|++++|.+
T Consensus 252 LDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~ 303 (607)
T 3bk7_A 252 FDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYG 303 (607)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEES
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECC
Confidence 99999999999999999999999878999999999976 46678999999973
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-26 Score=258.09 Aligned_cols=97 Identities=22% Similarity=0.283 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCCch-h-hhcc-----HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEE
Q 042733 119 MFIEEGMELVELNP-F-RQAL-----FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCT 191 (531)
Q Consensus 119 ~~~~~~l~~l~l~~-~-~~~~-----~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~ 191 (531)
..+++.++.+|+.+ . .++. .||||||+|||+|+.+|++|+|||||+|||+.+...+.+.|+++ |.|||++
T Consensus 878 ~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiI 954 (986)
T 2iw3_A 878 KEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIII 954 (986)
T ss_dssp HHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEE
T ss_pred HHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEE
Confidence 45778899999974 3 3433 39999999999999999999999999999999999999888654 6799999
Q ss_pred ecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 192 IHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 192 ~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
||+++ .+...||++++|.+ |+++..|+
T Consensus 955 SHD~e-~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 955 THSAE-FTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp CSCHH-HHTTTCCEEECCBT-TBCCC---
T ss_pred ECCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99976 46678999999986 99988775
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=255.24 Aligned_cols=176 Identities=18% Similarity=0.207 Sum_probs=140.8
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEE
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILG 96 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~ig 96 (531)
..+...|++++|+ ++.+|+|+|+.+.+| |||||||||+|+| | . ++|.+... ...++
T Consensus 434 ~~L~~~~ls~~yg--~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag----G----~--i~g~~~~~---~~~~~ 498 (986)
T 2iw3_A 434 EDLCNCEFSLAYG--AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN----G----Q--VDGFPTQE---ECRTV 498 (986)
T ss_dssp CEEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH----T----C--STTCCCTT---TSCEE
T ss_pred ceeEEeeEEEEEC--CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC----C----C--cCCCcccc---ceeEE
Confidence 3577779999995 467999999877766 9999999999995 1 1 13333211 12368
Q ss_pred EEecCC-CCCCCCcHHhHHHH----HHHHHHHHHHhcCCc-hhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 042733 97 YCEQND-IHSPHDTLYDFTHC----LYMFIEEGMELVELN-PFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISG 165 (531)
Q Consensus 97 yv~Q~~-~~~~~ltv~e~~~~----~~~~~~~~l~~l~l~-~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsg 165 (531)
|++|+. ..++.+|+.|+... ...++++.++.+|+. +..++.+ ||||||+||++|+.+|++|||||||+|
T Consensus 499 ~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~ 578 (986)
T 2iw3_A 499 YVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNH 578 (986)
T ss_dssp ETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTT
T ss_pred EEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 999874 67788999987431 045678899999994 5555544 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee-ecCCC
Q 042733 166 LDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI-SVGPL 221 (531)
Q Consensus 166 LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v-~~G~~ 221 (531)
||+.++..+.+.|++ .|.|||++||+++ .+.+.||++++|++ |+++ +.|++
T Consensus 579 LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G~~ 630 (986)
T 2iw3_A 579 LDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKGNF 630 (986)
T ss_dssp CCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEESCH
T ss_pred CCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCCCH
Confidence 999999999999988 5899999999976 56778999999986 8986 67875
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-26 Score=248.51 Aligned_cols=166 Identities=19% Similarity=0.183 Sum_probs=122.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEE-----------EEcCcccch---hhhc--ceEEEEecCCCC---CC
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNI-----------TVSGYPEKQ---ETFA--RILGYCEQNDIH---SP 106 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i-----------~~~g~~~~~---~~~~--~~igyv~Q~~~~---~~ 106 (531)
..+.+.+||||||||||+|+|+|..++ .+|++ .++|.+... .... ..+....|.... ..
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl~~p--~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGEIIP--NFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFL 102 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSCC--CTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC--CCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhc
Confidence 468999999999999999999996542 13444 344543321 0011 123333333221 12
Q ss_pred CCcHHhHHHH--HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 042733 107 HDTLYDFTHC--LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVR 179 (531)
Q Consensus 107 ~ltv~e~~~~--~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~ 179 (531)
..++.+.... ....++++++.+++.+..++.+ ||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 103 ~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~ 182 (538)
T 3ozx_A 103 KGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIR 182 (538)
T ss_dssp CSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred cCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 2467664221 1235778899999988777766 99999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEEEEecCCchHHHhccCeEEEEccCceee
Q 042733 180 NTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI 216 (531)
Q Consensus 180 ~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v 216 (531)
++++ |+|||+++|+++ ++...||++++|++ |...
T Consensus 183 ~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~-~~~~ 216 (538)
T 3ozx_A 183 ELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYG-ESSV 216 (538)
T ss_dssp HHCT-TSEEEEECSCHH-HHHHHCSEEEEEEE-ETTT
T ss_pred HHhC-CCEEEEEEeChH-HHHhhCCEEEEecC-Cccc
Confidence 9976 999999999986 57788999999974 5433
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-25 Score=245.97 Aligned_cols=181 Identities=15% Similarity=0.188 Sum_probs=129.1
Q ss_pred eEEEEEeCCCcccc--------ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEE-----------EcCcccch---h
Q 042733 32 EIVYSVDMPQIGDL--------NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNIT-----------VSGYPEKQ---E 89 (531)
Q Consensus 32 ~ls~~~~~~~~~iL--------~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~-----------~~g~~~~~---~ 89 (531)
|++++|+.. ...| ..+.+.+||||||||||||+|+|..++ .+|++. +.|..... .
T Consensus 82 ~~~~~Y~~~-~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P--~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN-SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKP--NLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT-SCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC-ceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCC--CCceEecccchhhhhheecChhhhhhhhH
Confidence 577888532 2233 468899999999999999999997543 124431 22222110 0
Q ss_pred hhcce--EEEEecCCCC------CCCCcHHhHHHH----HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh
Q 042733 90 TFARI--LGYCEQNDIH------SPHDTLYDFTHC----LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA 152 (531)
Q Consensus 90 ~~~~~--igyv~Q~~~~------~~~ltv~e~~~~----~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~ 152 (531)
...+. ..+.+|.... -+..++.+.... ....++++++.+++.+..++.+ ||||||+||+||+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~ 238 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ 238 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh
Confidence 01111 1233332211 122345543211 1256888999999988877765 99999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeee
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEIS 217 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~ 217 (531)
+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.. |..++
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~-~~~~~ 301 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYG-VPSVY 301 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEES-CTTTE
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Ccccc
Confidence 99999999999999999999999999999888999999999987 57788999999974 65544
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-25 Score=249.34 Aligned_cols=96 Identities=20% Similarity=0.311 Sum_probs=83.5
Q ss_pred HHHhcCCchh-hhccH-----HHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 124 GMELVELNPF-RQALF-----EQRKRLTVAVEFVANPS--IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 124 ~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~~p~--lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
.++.+|+.+. .++.+ ||||||+|||||+++|+ +|||||||+|||+.++..+++.|++++++|.|||++|||+
T Consensus 185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4777887653 34433 99999999999999998 9999999999999999999999999988899999999997
Q ss_pred chHHHhccCeEEEE------ccCceeeecCCCC
Q 042733 196 SIDIFYSFDELFLL------KQVGQEISVGPLG 222 (531)
Q Consensus 196 ~~~i~~~~d~v~lL------~~~G~~v~~G~~~ 222 (531)
+ ....||++++| ++ |++++.|+++
T Consensus 265 ~--~~~~~d~ii~l~~g~~~~~-G~i~~~g~~~ 294 (670)
T 3ux8_A 265 D--TMLAADYLIDIGPGAGIHG-GEVVAAGTPE 294 (670)
T ss_dssp H--HHHHCSEEEEECSSSGGGC-CSEEEEECHH
T ss_pred H--HHhhCCEEEEecccccccC-CEEEEecCHH
Confidence 6 34569999999 64 9999999874
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-24 Score=237.78 Aligned_cols=112 Identities=22% Similarity=0.217 Sum_probs=90.4
Q ss_pred CCcHHhHHH-----HHHHHHHHHHHhcCCch-hhhcc-----HHHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHH
Q 042733 107 HDTLYDFTH-----CLYMFIEEGMELVELNP-FRQAL-----FEQRKRLTVAVEFVANP---SIISRDEPISGLDARAAT 172 (531)
Q Consensus 107 ~ltv~e~~~-----~~~~~~~~~l~~l~l~~-~~~~~-----~GerqRv~iA~aL~~~p---~lllLDEPtsgLD~~~~~ 172 (531)
.+||.|+.. ....+..+.++.+++.. ..++. .||||||+|||||+++| ++|+|||||+|||+.++.
T Consensus 504 ~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~ 583 (670)
T 3ux8_A 504 DMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIA 583 (670)
T ss_dssp TSBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHH
T ss_pred hCCHHHHHHHHHHhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHH
Confidence 357766521 11234556777888753 22333 39999999999999987 499999999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE------ccCceeeecCCC
Q 042733 173 TVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL------KQVGQEISVGPL 221 (531)
Q Consensus 173 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL------~~~G~~v~~G~~ 221 (531)
.++++|++++++|.|||++|||++ ....||++++| ++ |++++.|++
T Consensus 584 ~i~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~i~~l~~~~g~~~-G~i~~~g~~ 635 (670)
T 3ux8_A 584 RLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRG-GQIVAVGTP 635 (670)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGC-CEEEEEECH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHH--HHHhCCEEEEecCCcCCCC-CEEEEecCH
Confidence 999999999888999999999986 34679999999 64 999999986
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=211.87 Aligned_cols=79 Identities=20% Similarity=0.192 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE----c
Q 042733 137 LFEQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL----K 210 (531)
Q Consensus 137 ~~GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL----~ 210 (531)
+.|||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||++. +...||++++| .
T Consensus 297 SgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d~i~~l~k~~~ 373 (415)
T 4aby_A 297 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAHHHYKVEKQVE 373 (415)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCSEEEEEEEEEE
T ss_pred CHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcCeEEEEEEecc
Confidence 559999999999999999 9999999999999999999999999997 5899999999974 56789999999 7
Q ss_pred cCceeeecC
Q 042733 211 QVGQEISVG 219 (531)
Q Consensus 211 ~~G~~v~~G 219 (531)
+ |+++...
T Consensus 374 ~-G~~~~~~ 381 (415)
T 4aby_A 374 D-GRTVSHV 381 (415)
T ss_dssp T-TEEEEEE
T ss_pred C-CceEEEE
Confidence 5 8877553
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-22 Score=226.06 Aligned_cols=100 Identities=23% Similarity=0.260 Sum_probs=86.4
Q ss_pred HHHHHHHhcCCch-hhhccH-----HHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE
Q 042733 120 FIEEGMELVELNP-FRQALF-----EQRKRLTVAVEFVANP---SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVC 190 (531)
Q Consensus 120 ~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~aL~~~p---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~ 190 (531)
...+.++.++|.. ..++.+ ||||||+||++|+.+| ++|||||||+|||+.++..+++.|++++++|.|||+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3567889999976 444443 9999999999999875 999999999999999999999999999888999999
Q ss_pred EecCCchHHHhccCeEEEEc-----cCceeeecCCC
Q 042733 191 TIHQPSIDIFYSFDELFLLK-----QVGQEISVGPL 221 (531)
Q Consensus 191 ~~H~~~~~i~~~~d~v~lL~-----~~G~~v~~G~~ 221 (531)
++|+++. ...||++++|. ++|++++.|++
T Consensus 904 isHdl~~--i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 904 IEHNLDV--IKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp ECCCHHH--HTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred EcCCHHH--HHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence 9999763 46799999993 24999999985
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-22 Score=224.98 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=87.6
Q ss_pred HHHHHHHHhcCCchh-hhccH-----HHHHHHHHHHHHhhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 042733 119 MFIEEGMELVELNPF-RQALF-----EQRKRLTVAVEFVAN---PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVV 189 (531)
Q Consensus 119 ~~~~~~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~~---p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi 189 (531)
.++.+.++.++|... .++.+ ||||||+||++|+.+ |++|||||||+|||+.++..+++.|++++++|.|||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 356788999999763 34433 999999999999996 799999999999999999999999999998899999
Q ss_pred EEecCCchHHHhccCeEEEEc-----cCceeeecCCC
Q 042733 190 CTIHQPSIDIFYSFDELFLLK-----QVGQEISVGPL 221 (531)
Q Consensus 190 ~~~H~~~~~i~~~~d~v~lL~-----~~G~~v~~G~~ 221 (531)
+++|+++ .+ ..||++++|. ++|++++.|++
T Consensus 788 visHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 788 AVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp EECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred EEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 9999976 34 7899999993 24999999985
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.9e-22 Score=224.22 Aligned_cols=101 Identities=20% Similarity=0.251 Sum_probs=86.5
Q ss_pred HHHHHHHHhcCCchhh------hccHHHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 042733 119 MFIEEGMELVELNPFR------QALFEQRKRLTVAVEFVANP---SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVV 189 (531)
Q Consensus 119 ~~~~~~l~~l~l~~~~------~~~~GerqRv~iA~aL~~~p---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi 189 (531)
.++.+.++.+||.... ..+.||||||+||++|+++| ++|||||||+|||+.+++.+++.|++++++|.|||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 3566788888886432 23349999999999999876 79999999999999999999999999988899999
Q ss_pred EEecCCchHHHhccCeEEEE------ccCceeeecCCCC
Q 042733 190 CTIHQPSIDIFYSFDELFLL------KQVGQEISVGPLG 222 (531)
Q Consensus 190 ~~~H~~~~~i~~~~d~v~lL------~~~G~~v~~G~~~ 222 (531)
+++|+++ ....||+|++| + +|++++.|+++
T Consensus 863 vI~HdL~--~i~~ADrIivLgp~gg~~-~G~Iv~~Gtpe 898 (916)
T 3pih_A 863 VIEHNLD--VIKNADHIIDLGPEGGKE-GGYIVATGTPE 898 (916)
T ss_dssp EECCCHH--HHTTCSEEEEEESSSGGG-CCEEEEEESHH
T ss_pred EEeCCHH--HHHhCCEEEEecCCCCCC-CCEEEEEcCHH
Confidence 9999985 34569999999 6 59999999874
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=8e-23 Score=218.15 Aligned_cols=163 Identities=12% Similarity=0.015 Sum_probs=121.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEE-E-EEEcCcccchhhhcceEEEEecCCC---CCCCCcHHhHHH------
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITR-N-ITVSGYPEKQETFARILGYCEQNDI---HSPHDTLYDFTH------ 115 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G-~-i~~~g~~~~~~~~~~~igyv~Q~~~---~~~~ltv~e~~~------ 115 (531)
.+.+.+||||||||||+|+|+|...+ .+| + +.++|. .++.++|++|+.. +.+.+|++++.-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~p--~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~ 210 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYALK--FNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQLPTWGQSLTS 210 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTHH--HHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBS
T ss_pred CEEEEECCCCCCHHHHHHHHhCcccc--cCCceeEEEcCC------ccCCeeeeccchhhcccccccchhhhhccccccc
Confidence 57789999999999999999998642 357 7 888872 2567899999874 344567765320
Q ss_pred --HHHHHHHHHHHhcCCchhhh---ccHHHHHHHHHHHH--HhhCCCe----EEEeC-CCCCCCHHHHHHHHHHHHHHHH
Q 042733 116 --CLYMFIEEGMELVELNPFRQ---ALFEQRKRLTVAVE--FVANPSI----ISRDE-PISGLDARAATTVIRMVRNTVD 183 (531)
Q Consensus 116 --~~~~~~~~~l~~l~l~~~~~---~~~GerqRv~iA~a--L~~~p~l----llLDE-PtsgLD~~~~~~i~~~L~~l~~ 183 (531)
.....+.++++.+|+.+..+ .+.||||||+||++ |+.+|++ ||||| ||+|||+. ...+.+++++
T Consensus 211 ~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~--- 286 (460)
T 2npi_A 211 GATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK--- 286 (460)
T ss_dssp SCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---
T ss_pred CcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---
Confidence 00123445667778876554 22399999999999 9999999 99999 99999999 5445444443
Q ss_pred cCCeEEEEecCCc--h---HHHhccCe-----EEEEccCceeeecCCCC
Q 042733 184 MGRTVVCTIHQPS--I---DIFYSFDE-----LFLLKQVGQEISVGPLG 222 (531)
Q Consensus 184 ~g~tvi~~~H~~~--~---~i~~~~d~-----v~lL~~~G~~v~~G~~~ 222 (531)
.+.|+|+++|+.+ . ++..++|+ +++|+++|+++ .|+++
T Consensus 287 ~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~ 334 (460)
T 2npi_A 287 LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDV 334 (460)
T ss_dssp TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHH
T ss_pred hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHH
Confidence 3889999999976 2 34568999 99998238898 88764
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.2e-20 Score=190.81 Aligned_cols=77 Identities=14% Similarity=0.260 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHh------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 138 FEQRKRLTVAVEFV------ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 138 ~GerqRv~iA~aL~------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
.||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|.|||++||+++ ....+|++++|++
T Consensus 282 gGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~~~l~~ 359 (365)
T 3qf7_A 282 GGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRKLRITG 359 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCEEEEET
T ss_pred HHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 39999999999999 799999999999999999999999999999888999999999975 3677999999986
Q ss_pred Cceeee
Q 042733 212 VGQEIS 217 (531)
Q Consensus 212 ~G~~v~ 217 (531)
|+++.
T Consensus 360 -G~i~~ 364 (365)
T 3qf7_A 360 -GVVVN 364 (365)
T ss_dssp -TEEC-
T ss_pred -CEEEe
Confidence 88864
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-23 Score=199.32 Aligned_cols=130 Identities=18% Similarity=0.153 Sum_probs=88.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCC--CceEEEEEEEcCcccchhhhcceEEEEecCC--CCCCCC-cHHhHHH--HHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKP--GGYITRNITVSGYPEKQETFARILGYCEQND--IHSPHD-TLYDFTH--CLYM 119 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~--~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~--~~~~~l-tv~e~~~--~~~~ 119 (531)
++.+.+||||||||||+|+|+|. + .|.+.+. .+. .+ ....++.+||++|++ .+.+.. ++.+... ....
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~-~~~-~~--~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~~ 97 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRI-ILT-RP--AVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEPE 97 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEE-EEE-EC--SCCTTCCCCSSCC------CTTTHHHHHHHTTTSCTT
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeE-Eec-CC--chhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccHH
Confidence 46789999999999999999998 4 3433221 111 11 113456799999975 221111 1111000 0112
Q ss_pred HHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 120 FIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 120 ~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
.+++.++. ++ ||||||+|||||+.+|++|+|||||+| ++..+.+.|+++ ++|+||| +|||++
T Consensus 98 ~~~~~l~~-gl--------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 98 VIPKLMEA-GI--------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp HHHHHHHT-TS--------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred HHHHHHHh-CC--------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 34555555 44 999999999999999999999999999 888999999988 6689999 999975
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-20 Score=173.90 Aligned_cols=139 Identities=12% Similarity=0.141 Sum_probs=91.6
Q ss_pred eEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHH
Q 042733 32 EIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLY 111 (531)
Q Consensus 32 ~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~ 111 (531)
|++++++. ..+-+.+||||||||||+|++.+-.. .++ ....+ |+++|+... ..+.
T Consensus 1 ~vsl~i~~------gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~-----~d~~~---g~~~~~~~~---~~~~ 55 (171)
T 4gp7_A 1 SMKLTIPE------LSLVVLIGSSGSGKSTFAKKHFKPTE--------VIS-----SDFCR---GLMSDDEND---QTVT 55 (171)
T ss_dssp CEEEEEES------SEEEEEECCTTSCHHHHHHHHSCGGG--------EEE-----HHHHH---HHHCSSTTC---GGGH
T ss_pred CccccCCC------CEEEEEECCCCCCHHHHHHHHccCCe--------EEc-----cHHHH---HHhcCcccc---hhhH
Confidence 45666642 25789999999999999999764221 111 11121 566665421 1111
Q ss_pred hH-HHHHHHHHHHHHHhcCCchhhh----ccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH----------------H
Q 042733 112 DF-THCLYMFIEEGMELVELNPFRQ----ALFEQRKRLTVAVEFVANPSIISRDEPISGLDAR----------------A 170 (531)
Q Consensus 112 e~-~~~~~~~~~~~l~~l~l~~~~~----~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~----------------~ 170 (531)
.. ........... ...+.....+ ...|||||++||++++.+|++++|||||+|||+. .
T Consensus 56 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~ 134 (171)
T 4gp7_A 56 GAAFDVLHYIVSKR-LQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKH 134 (171)
T ss_dssp HHHHHHHHHHHHHH-HHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHH
Confidence 11 01111111222 2223322222 2338999999999999999999999999999999 6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 171 ATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 171 ~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+..+.+.+++++++|.|+|++||+++
T Consensus 135 ~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 135 TQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp HHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred HHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 68899999988877999999999975
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.3e-19 Score=180.11 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=68.2
Q ss_pred cHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeE--EEEc
Q 042733 137 LFEQRKRLTVAVEFV----ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDEL--FLLK 210 (531)
Q Consensus 137 ~~GerqRv~iA~aL~----~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v--~lL~ 210 (531)
+.|||||++||++|+ .+|++++|||||++||+..+..+.+.|++++ +|.+||++||++. +.+.||++ +++.
T Consensus 221 S~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v~~~ 297 (322)
T 1e69_A 221 SGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGVTMV 297 (322)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEEEES
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEEEEe
Confidence 349999999999997 5889999999999999999999999999984 5889999999964 57789986 7777
Q ss_pred cCceeeecCCC
Q 042733 211 QVGQEISVGPL 221 (531)
Q Consensus 211 ~~G~~v~~G~~ 221 (531)
++...+.....
T Consensus 298 ~g~s~~~~~~~ 308 (322)
T 1e69_A 298 NGVSAIVPVEV 308 (322)
T ss_dssp SSCEEEEECCC
T ss_pred CCEEEEEEEEc
Confidence 64444444443
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-19 Score=169.19 Aligned_cols=141 Identities=13% Similarity=-0.014 Sum_probs=91.1
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhc
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELV 128 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l 128 (531)
-+.+||||||||||+|+|+|...- .+.|... ........++.+||++|+.. +.++ .+..+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i-~~~g~~~---~~~~~~~~~~~ig~~~~~~~------~~~~----------~~~~~ 62 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGK-RAIGFWT---EEVRDPETKKRTGFRIITTE------GKKK----------IFSSK 62 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGG-GEEEEEE---EEEC------CCEEEEEETT------CCEE----------EEEET
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC-cCCCEEh---hhhccccccceeEEEeecCc------HHHH----------HHHhh
Confidence 467899999999999999996531 1223211 11111124567899999751 1111 01111
Q ss_pred CCc--hhhh-----ccHHHHHHHHHHHH-----HhhCCCeEEEeC--CCCCCCHHHHHHHHHHHHHHHHcCCeEEEEec-
Q 042733 129 ELN--PFRQ-----ALFEQRKRLTVAVE-----FVANPSIISRDE--PISGLDARAATTVIRMVRNTVDMGRTVVCTIH- 193 (531)
Q Consensus 129 ~l~--~~~~-----~~~GerqRv~iA~a-----L~~~p~lllLDE--PtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H- 193 (531)
+.. +..+ .+.|||||++||++ ++.+|++++||| ||++||+..++.+.+.+++ .+.|+|+++|
T Consensus 63 ~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~ 139 (178)
T 1ye8_A 63 FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPI 139 (178)
T ss_dssp TCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCS
T ss_pred cCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEcc
Confidence 111 1112 23499999999996 999999999999 9999999999999888865 4677899986
Q ss_pred --CCchHHHhccCeEEEEccCceeeec
Q 042733 194 --QPSIDIFYSFDELFLLKQVGQEISV 218 (531)
Q Consensus 194 --~~~~~i~~~~d~v~lL~~~G~~v~~ 218 (531)
+.. .+...+|+ . +|+++..
T Consensus 140 ~h~~~-~~~~i~~r----~-~~~i~~~ 160 (178)
T 1ye8_A 140 RDVHP-LVKEIRRL----P-GAVLIEL 160 (178)
T ss_dssp SCCSH-HHHHHHTC----T-TCEEEEC
T ss_pred CCCch-HHHHHHhc----C-CcEEEEe
Confidence 433 45556776 3 3666553
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-21 Score=182.80 Aligned_cols=155 Identities=12% Similarity=0.068 Sum_probs=104.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhH-------------
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDF------------- 113 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~------------- 113 (531)
.+.+.+||||||||||+|+|+|..+. +.+.+.+.+.+... ..++.++|++|++..++.+|+.++
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~~--i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~ 97 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIPN--LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHR 97 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTT--CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc--eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhh
Confidence 57899999999999999999997642 22333333332211 234568999998766665555432
Q ss_pred ----HHHHHHHHHHH------HHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCC----CHHHHHHHHHHHH
Q 042733 114 ----THCLYMFIEEG------MELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGL----DARAATTVIRMVR 179 (531)
Q Consensus 114 ----~~~~~~~~~~~------l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgL----D~~~~~~i~~~L~ 179 (531)
....++++++. ++.+|+.+.++...++. + +|+.+|++++|||||+|+ |+..++++.+.++
T Consensus 98 ~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~l---S---~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~ 171 (207)
T 1znw_A 98 SGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAV---T---VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARI 171 (207)
T ss_dssp EEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSE---E---EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcE---E---EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 11222333333 23333322222221110 1 788999999999999998 7889999999999
Q ss_pred HHHH-cCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 180 NTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 180 ~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
++++ .|.|+|++|||++ ++...||+++++.+
T Consensus 172 ~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 172 ELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA 203 (207)
T ss_dssp HHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred HHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence 9975 5899999999987 67889999998854
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-20 Score=194.79 Aligned_cols=151 Identities=11% Similarity=0.099 Sum_probs=111.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHH--HHHHHHHHHH
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTH--CLYMFIEEGM 125 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~--~~~~~~~~~l 125 (531)
+.+.+||||||||||+|+|+|..++ .+|++.++|.+.. ++ ++++|++ .++.+|+.|+.. .....+++.+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t----~~--~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L 141 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT----ME--RHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYL 141 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC--------CC--CEEEECS-SCTTEEEEECCCGGGSSCCHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc----ee--EEecccc-ccCCeeehHhhcccchHHHHHHHH
Confidence 7789999999999999999997543 2356677665432 22 7899975 567788877621 1123467788
Q ss_pred HhcCCchhhhcc---HH--HHHHHHHHHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-----HcC
Q 042733 126 ELVELNPFRQAL---FE--QRKRLTVAVEFVA----------NPSIISRDEPISGLDARAATTVIRMVRNTV-----DMG 185 (531)
Q Consensus 126 ~~l~l~~~~~~~---~G--erqRv~iA~aL~~----------~p~lllLDEPtsgLD~~~~~~i~~~L~~l~-----~~g 185 (531)
+.+++.+..... .| ||||+.||++|++ +|++++|||||+|||+.++.++++.++++. +.|
T Consensus 142 ~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 142 EKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp HHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888876543222 26 9999999999999 999999999999999999999999999884 323
Q ss_pred ----CeEEEEecCCch-HHHhccCeEE
Q 042733 186 ----RTVVCTIHQPSI-DIFYSFDELF 207 (531)
Q Consensus 186 ----~tvi~~~H~~~~-~i~~~~d~v~ 207 (531)
.+|++++|+.+. ++.+++|++.
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 568889998762 2556666663
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-16 Score=159.18 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=63.8
Q ss_pred HHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 139 EQRK------RLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 139 Gerq------Rv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
|||| |+++|++|+.+|++|+|||||+|||+..+..+.+.|+++.++|.|||++||++ ++.+.||+++.|.
T Consensus 252 G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~~~l~ 327 (339)
T 3qkt_A 252 GERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVIRIS 327 (339)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEEEEEE
Confidence 9999 67778888889999999999999999999999999999887789999999995 4678899999985
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-18 Score=173.80 Aligned_cols=138 Identities=12% Similarity=0.043 Sum_probs=85.5
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHH--------HHHHH
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTH--------CLYMF 120 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~--------~~~~~ 120 (531)
-+.+||||||||||+|+|+|...+ .+|++.++|.+......++.++|++|++.+++.+||.|+.. ...+.
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~~--~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQVS--RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 367999999999999999996542 46889999876544345678999999999999999988610 00011
Q ss_pred HHHHHH-hcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 121 IEEGME-LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 121 ~~~~l~-~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+.+.++ .+.-......+.|||||+++||+++. +++||||+.|||+.. .+.++.+.+. .+||+++|..+
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGG
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEeccc
Confidence 222221 11101112334499999999999876 999999999999987 4556666655 88999988643
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.1e-18 Score=169.90 Aligned_cols=159 Identities=13% Similarity=0.022 Sum_probs=109.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhh--cceEEEEecCCC-CCCCCcHHhHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETF--ARILGYCEQNDI-HSPHDTLYDFTHC 116 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~--~~~igyv~Q~~~-~~~~ltv~e~~~~ 116 (531)
.+-+.+||||||||||+++|+|...+ ..|+|.++|.+... ..+ ++.++|++|++. ..|..|++++...
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~ 178 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 178 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence 57889999999999999999996431 13688888876432 122 346899999988 8888899887432
Q ss_pred HHH--HHHHHHHhcCCchhhhccHHH--HHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEE
Q 042733 117 LYM--FIEEGMELVELNPFRQALFEQ--RKRLTVAVEFVANPS--IISRDEPISGLDARAATTVIRMVRNTVD-MGRTVV 189 (531)
Q Consensus 117 ~~~--~~~~~l~~l~l~~~~~~~~Ge--rqRv~iA~aL~~~p~--lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi 189 (531)
... ....+++.+|+.+..+..++| |||++||++++.+|+ +|+|| ||+|||+..+ ++++.+ .|.|+|
T Consensus 179 ~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~i 251 (302)
T 3b9q_A 179 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGL 251 (302)
T ss_dssp HHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEE
T ss_pred HHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEE
Confidence 111 001235566776666655543 899999999999999 99999 9999999865 345554 489999
Q ss_pred EEecCCch--------HHHhccCeEEEEccCcee
Q 042733 190 CTIHQPSI--------DIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 190 ~~~H~~~~--------~i~~~~d~v~lL~~~G~~ 215 (531)
++||.... .+....+.+.++.. |+.
T Consensus 252 iiThlD~~~~~g~~l~~~~~~~~pi~~i~~-Ge~ 284 (302)
T 3b9q_A 252 ILTKLDGSARGGCVVSVVEELGIPVKFIGV-GEA 284 (302)
T ss_dssp EEECCSSCSCTHHHHHHHHHHCCCEEEEEC-SSS
T ss_pred EEeCCCCCCccChheehHHHHCCCEEEEeC-CCC
Confidence 99994220 11223456677764 544
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7.7e-17 Score=165.13 Aligned_cols=119 Identities=15% Similarity=0.035 Sum_probs=91.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
+.+.+||+|||||||+|+|+|..++ .+|.+.++|.+... ...++.++++++
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~g-------------------------- 224 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFFG-------------------------- 224 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEECB--------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEeC--------------------------
Confidence 4577788899999999999997653 25788998865211 123455666642
Q ss_pred hcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeE
Q 042733 127 LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDEL 206 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v 206 (531)
.||+||++||++|..+|++|+|||||+ .++.+.|+.+...+.|+|+++|+++ ....+||+
T Consensus 225 -----------gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri 284 (330)
T 2pt7_A 225 -----------GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRL 284 (330)
T ss_dssp -----------TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHH
T ss_pred -----------CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhh
Confidence 389999999999999999999999998 2456777777654568999999987 56789999
Q ss_pred EEEccCcee
Q 042733 207 FLLKQVGQE 215 (531)
Q Consensus 207 ~lL~~~G~~ 215 (531)
+.|.+ |+.
T Consensus 285 ~~l~~-g~~ 292 (330)
T 2pt7_A 285 ANMSS-SNS 292 (330)
T ss_dssp HHHHH-TSG
T ss_pred eehhc-CCc
Confidence 99986 653
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=138.44 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=65.7
Q ss_pred cHHHHHHHHHH------HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 137 LFEQRKRLTVA------VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 137 ~~GerqRv~iA------~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
+.|||||++|| ++|+.+|++++|||||+|||+.++..+.+.++++.++|+|||++||++ ++...||++++|+
T Consensus 59 SgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~ii~l~ 136 (148)
T 1f2t_B 59 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVIRIS 136 (148)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEEEEEE
T ss_pred CHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEEEEEE
Confidence 34999999876 899999999999999999999999999999999877799999999997 3567899999994
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-16 Score=159.41 Aligned_cols=165 Identities=14% Similarity=0.026 Sum_probs=99.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEE-EEEEcCcccchhhhcceEEEEecCCCC--CCCCcHHhH-HHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITR-NITVSGYPEKQETFARILGYCEQNDIH--SPHDTLYDF-THCLYMFIE 122 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G-~i~~~g~~~~~~~~~~~igyv~Q~~~~--~~~ltv~e~-~~~~~~~~~ 122 (531)
++.+.+||+|||||||++.|+|..... .| .+.+.+........++++..+.++..+ ++.++.... .....+.++
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 113 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFD 113 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHH
Confidence 577888888999999999999953210 12 444433333322333333333333211 111222111 111223344
Q ss_pred HHHHhcC--Cchh-hhccHHH-HHHHHHHHHHhhCCCeEEEeCCCC---C---CCH-HHHHHHHHHHHHHHHc-CCeEEE
Q 042733 123 EGMELVE--LNPF-RQALFEQ-RKRLTVAVEFVANPSIISRDEPIS---G---LDA-RAATTVIRMVRNTVDM-GRTVVC 190 (531)
Q Consensus 123 ~~l~~l~--l~~~-~~~~~Ge-rqRv~iA~aL~~~p~lllLDEPts---g---LD~-~~~~~i~~~L~~l~~~-g~tvi~ 190 (531)
++++..+ +.+. .+..++| +||+. |+++..+|+++++||||+ + +|. .....+.+.|++++++ |.|||+
T Consensus 114 ~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~ 192 (296)
T 1cr0_A 114 ELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV 192 (296)
T ss_dssp HHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 4443322 3322 3455676 77777 999999999999999999 5 565 6778899999999865 999999
Q ss_pred EecCCc-h--------------------HHHhccCeEEEEccCcee
Q 042733 191 TIHQPS-I--------------------DIFYSFDELFLLKQVGQE 215 (531)
Q Consensus 191 ~~H~~~-~--------------------~i~~~~d~v~lL~~~G~~ 215 (531)
++|+.. . .+...||+|++|.+ |+.
T Consensus 193 vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~-~~~ 237 (296)
T 1cr0_A 193 ICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER-NQQ 237 (296)
T ss_dssp EEECC-----------------CCC---CHHHHCSEEEEEEE-C--
T ss_pred EEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec-Ccc
Confidence 999952 2 46678999999986 653
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.5e-17 Score=166.92 Aligned_cols=139 Identities=14% Similarity=0.039 Sum_probs=102.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhh--cceEEEEecCCC-CCCCCcHHhHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETF--ARILGYCEQNDI-HSPHDTLYDFTHC 116 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~--~~~igyv~Q~~~-~~~~ltv~e~~~~ 116 (531)
.+-+.+||||||||||++.|+|...+ ..|+|.++|.+... ..+ ++.++|++|++. ..|..+++++...
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence 57889999999999999999996431 13688888876432 112 346899999988 8888888886332
Q ss_pred HHHH-H-HHHHHhcCCchhhhccHHH--HHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEE
Q 042733 117 LYMF-I-EEGMELVELNPFRQALFEQ--RKRLTVAVEFVANPS--IISRDEPISGLDARAATTVIRMVRNTVD-MGRTVV 189 (531)
Q Consensus 117 ~~~~-~-~~~l~~l~l~~~~~~~~Ge--rqRv~iA~aL~~~p~--lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi 189 (531)
.... . ..+++.+|+.+..+..++| |||++||++++.+|+ +|+|| ||+|||+..+. +++.+ .|.|+|
T Consensus 236 ~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~i 308 (359)
T 2og2_A 236 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGL 308 (359)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEE
T ss_pred HHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEE
Confidence 1110 0 1234556776655555542 899999999999999 99999 99999988653 44554 489999
Q ss_pred EEecC
Q 042733 190 CTIHQ 194 (531)
Q Consensus 190 ~~~H~ 194 (531)
++||.
T Consensus 309 iiThl 313 (359)
T 2og2_A 309 ILTKL 313 (359)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 99994
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-15 Score=170.16 Aligned_cols=99 Identities=21% Similarity=0.304 Sum_probs=85.2
Q ss_pred HHHHHHhcCCchh-hhccH-----HHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEe
Q 042733 121 IEEGMELVELNPF-RQALF-----EQRKRLTVAVEFVANPS--IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTI 192 (531)
Q Consensus 121 ~~~~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~~p~--lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~ 192 (531)
..+.+..+|+... .++.+ ||||||+||++|+++|+ +|+|||||+|||+....++++.|++++++|.|||+++
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3456777888654 34433 99999999999999887 9999999999999999999999999988899999999
Q ss_pred cCCchHHHhccCeEEEE------ccCceeeecCCCC
Q 042733 193 HQPSIDIFYSFDELFLL------KQVGQEISVGPLG 222 (531)
Q Consensus 193 H~~~~~i~~~~d~v~lL------~~~G~~v~~G~~~ 222 (531)
||++ ....+|+++.| + +|++++.|+++
T Consensus 524 Hd~~--~~~~aD~ii~lgpgag~~-~G~iv~~G~~~ 556 (916)
T 3pih_A 524 HDEE--VIRNADHIIDIGPGGGTN-GGRVVFQGTVD 556 (916)
T ss_dssp CCHH--HHHTCSEEEEEESSSGGG-CSEEEEEECHH
T ss_pred CCHH--HHHhCCEEEEEcCCcccC-CCEEEEeechh
Confidence 9975 34569999999 6 59999999875
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.57 E-value=7.8e-15 Score=166.46 Aligned_cols=98 Identities=19% Similarity=0.285 Sum_probs=85.2
Q ss_pred HHHhcCCchh-hhccH-----HHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 124 GMELVELNPF-RQALF-----EQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 124 ~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
.++.+||... .++.+ ||||||+||++|..+| ++++|||||+|||+....++++.|+++++.|.|||+++|++
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 566 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 566 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 4788888754 34443 9999999999999985 99999999999999999999999999988899999999997
Q ss_pred chHHHhccCeEEEEc-----cCceeeecCCCCC
Q 042733 196 SIDIFYSFDELFLLK-----QVGQEISVGPLGP 223 (531)
Q Consensus 196 ~~~i~~~~d~v~lL~-----~~G~~v~~G~~~~ 223 (531)
+ ....+|+|++|. ++|++++.|++++
T Consensus 567 ~--~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e 597 (972)
T 2r6f_A 567 D--TMLAADYLIDIGPGAGIHGGEVVAAGTPEE 597 (972)
T ss_dssp H--HHHSCSEEEEECSSSGGGCCSEEEEECTTT
T ss_pred H--HHHhCCEEEEeCCCccCCCCEEEEecCHHH
Confidence 5 346799999993 3599999999875
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-17 Score=173.53 Aligned_cols=179 Identities=15% Similarity=0.142 Sum_probs=124.5
Q ss_pred eEEEEEeEEEEEeCCCccccccE--------EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCc---ccch------
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSL--------SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGY---PEKQ------ 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~v--------s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~---~~~~------ 88 (531)
..++++++++.|.. ...+|+++ .+.+||+|||||||+++|+|..++ ..|.+.++|. +...
T Consensus 130 ~~l~~~~v~~~~~t-g~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT-GVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC-SCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC-CceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhc
Confidence 34678888888852 24466665 344555599999999999997654 3689999997 3321
Q ss_pred --hhhcceEEEEecC-CCCCCCCcHHhHHHHHHHHHHHHHHh-cC-CchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 042733 89 --ETFARILGYCEQN-DIHSPHDTLYDFTHCLYMFIEEGMEL-VE-LNPFRQALFEQRKRLTVAVEFVANPSIISRDEPI 163 (531)
Q Consensus 89 --~~~~~~igyv~Q~-~~~~~~ltv~e~~~~~~~~~~~~l~~-l~-l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPt 163 (531)
...++.++|++|+ +..++.+++.++.....+...+.-+. +. ++...+...|| ||++|| +.+|++ |
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~~------t 276 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPPA------T 276 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCCC------S
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCcc------c
Confidence 2356789999995 45566778777633222111110000 00 11112222378 999999 899988 9
Q ss_pred CCCCHHHHHHHHHHHHHHHH---c-CC-----eEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 164 SGLDARAATTVIRMVRNTVD---M-GR-----TVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~---~-g~-----tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||+.....+.++++++.+ + |. ||++++||++ ...+|++++|.+ |+++..|++
T Consensus 277 ~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 277 KGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp SSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 99999999999999999876 3 64 8999999987 356899999986 999988753
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-15 Score=176.58 Aligned_cols=159 Identities=14% Similarity=0.048 Sum_probs=103.0
Q ss_pred EEEEEe-----EEEEEeCCCccccccEEE----------------EEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 042733 27 YISLNE-----IVYSVDMPQIGDLNSLSG----------------AFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYP 85 (531)
Q Consensus 27 ~l~~~~-----ls~~~~~~~~~iL~~vs~----------------~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~ 85 (531)
.|+++| |++.|. ++..+++|+++ ..||||||||||||+| |....
T Consensus 750 ~l~i~~~rHP~l~~~~~-~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------- 814 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF-GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------- 814 (1022)
T ss_dssp CEEEEEECCCC-------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------
T ss_pred eEEEEeccccEEEEEec-CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------
Confidence 588899 888773 23456666655 5667799999999999 86420
Q ss_pred cchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchh----hhccHHHHHHHHHHHHHhhCCCeEEEeC
Q 042733 86 EKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPF----RQALFEQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 86 ~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~----~~~~~GerqRv~iA~aL~~~p~lllLDE 161 (531)
.++..+||||+.. .+++.+. ++..+|+.+. ..+..++.+++++|++++++|+++||||
T Consensus 815 -----~aqiG~~Vpq~~~---~l~v~d~----------I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 815 -----MAQMGCYVPAEVC---RLTPIDR----------VFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDE 876 (1022)
T ss_dssp -----HHTTTCCEESSEE---EECCCSB----------EEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred -----HhheeEEeccCcC---CCCHHHH----------HHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 1222238888642 3343332 1111222211 1234467778999999999999999999
Q ss_pred CCCCCCHHHH-HHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceee--ecCCC
Q 042733 162 PISGLDARAA-TTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEI--SVGPL 221 (531)
Q Consensus 162 PtsgLD~~~~-~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v--~~G~~ 221 (531)
|++|+|+... ..+++.|+.++++ |.++|++||+++ .+...+|++.+++ |++. +.|++
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~~~~~~~~ 937 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMACMVENEC 937 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEEEC-----
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEEEEEecCc
Confidence 9999999985 5578899999876 999999999976 3556789888774 7877 44543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-15 Score=162.17 Aligned_cols=143 Identities=21% Similarity=0.111 Sum_probs=98.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCC-CceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKP-GGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~-~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l 125 (531)
.+.+.+||+|||||||+++++|... .| + +.+.+++|+.. ..+.+.........++ +
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G----~--------------~vi~~~~ee~~----~~l~~~~~~~g~~~~~-~ 338 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANK----E--------------RAILFAYEESR----AQLLRNAYSWGMDFEE-M 338 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTT----C--------------CEEEEESSSCH----HHHHHHHHTTSCCHHH-H
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCC----C--------------CEEEEEEeCCH----HHHHHHHHHcCCCHHH-H
Confidence 5788899999999999999999532 12 1 11233333321 0111000000000111 1
Q ss_pred HhcCCchhhh-----ccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH-----HHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 126 ELVELNPFRQ-----ALFEQRKRLTVAVEFVANPSIISRDEPISGLDAR-----AATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 126 ~~l~l~~~~~-----~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~-----~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
...|+....+ ...||+||+.+|+++..+|+++++| ||+|||.. .+..+.++++.+++.|.|||+++|+.
T Consensus 339 ~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 339 ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 1233333332 2459999999999999999999999 99999999 99999999999988899999999997
Q ss_pred c---------hHHHhccCeEEEEccCce
Q 042733 196 S---------IDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 196 ~---------~~i~~~~d~v~lL~~~G~ 214 (531)
. ..+...||++++|.+ |+
T Consensus 418 ~~~~~~~~~~~~l~~~~D~vi~L~~-ge 444 (525)
T 1tf7_A 418 QFMGAHSITDSHISTITDTIILLQY-VE 444 (525)
T ss_dssp SSSCCCSSCSSCCTTTCSEEEEEEE-EE
T ss_pred cccCcccccCcccceeeeEEEEEEE-EE
Confidence 1 245678999999986 65
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-14 Score=164.52 Aligned_cols=98 Identities=18% Similarity=0.225 Sum_probs=85.5
Q ss_pred HHHhcCCchh-hhccH-----HHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 124 GMELVELNPF-RQALF-----EQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 124 ~l~~l~l~~~-~~~~~-----GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
.++.+|+... .++.+ ||||||+||++|..+| ++++|||||+|||+...+.++++|+++++.|.|||+++|++
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 4678888754 44443 9999999999999999 59999999999999999999999999988899999999997
Q ss_pred chHHHhccCeEEEEc-----cCceeeecCCCCC
Q 042733 196 SIDIFYSFDELFLLK-----QVGQEISVGPLGP 223 (531)
Q Consensus 196 ~~~i~~~~d~v~lL~-----~~G~~v~~G~~~~ 223 (531)
+ +...+|+|+.|. ++|++++.|++++
T Consensus 442 ~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~ 472 (842)
T 2vf7_A 442 D--VIRRADWLVDVGPEAGEKGGEILYSGPPEG 472 (842)
T ss_dssp H--HHTTCSEEEEECSSSGGGCCSEEEEECGGG
T ss_pred H--HHHhCCEEEEeCCCcccCCCEEEEecCHHH
Confidence 5 456799999993 3599999999864
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.4e-15 Score=168.63 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHH--hhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCce
Q 042733 139 EQRKRLTVAVEF--VANPSIISRDEPISGLDARAATTV-IRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQ 214 (531)
Q Consensus 139 GerqRv~iA~aL--~~~p~lllLDEPtsgLD~~~~~~i-~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~ 214 (531)
+++++..+|+++ +++|+++||||||+|||+.....+ +.+++.+++ .|.++|++||+. ++..++|++..+.+ |+
T Consensus 725 f~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~ 801 (934)
T 3thx_A 725 FMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LH 801 (934)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EE
T ss_pred hHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eE
Confidence 455555666666 899999999999999999999888 667788876 499999999995 46788999988886 99
Q ss_pred eeecCCCC
Q 042733 215 EISVGPLG 222 (531)
Q Consensus 215 ~v~~G~~~ 222 (531)
+...++.+
T Consensus 802 v~~~~~~~ 809 (934)
T 3thx_A 802 VTALTTEE 809 (934)
T ss_dssp EEEEEETT
T ss_pred EEEEecCC
Confidence 98877654
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.50 E-value=4.5e-16 Score=171.93 Aligned_cols=182 Identities=10% Similarity=0.076 Sum_probs=107.9
Q ss_pred EEEEEeEEEEEeCCCcccccc----------------EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc---
Q 042733 27 YISLNEIVYSVDMPQIGDLNS----------------LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK--- 87 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~----------------vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~--- 87 (531)
.++++|+++.|+...+++|+. .-+.+||+||||||||++|+|...+ ..+|.++++|.+..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~ 88 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKK 88 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEec
Confidence 456777777775322222221 2478999999999999999997532 13688888887631
Q ss_pred ---hhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCC--
Q 042733 88 ---QETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEP-- 162 (531)
Q Consensus 88 ---~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEP-- 162 (531)
...+++.+||++|+..+++.+||+++....... +...+. .. .++++.++.+...+|+++++|||
T Consensus 89 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~----~~~~~~-~~------s~~~i~l~i~~~~~p~LlLlDePGi 157 (608)
T 3szr_A 89 LVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA----IAGEGM-GI------SHELITLEISSRDVPDLTLIDLPGI 157 (608)
T ss_dssp CSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH----HHCSSS-CC------CSCCEEEEEEESSSCCEEEEECCC-
T ss_pred CCccccceeEEeeecccccCCCHHHHHHHHHHHHHH----hcCCcc-cc------chHHHHHHhcCCCCCceeEeeCCCc
Confidence 124677899999999999999998864322111 111000 00 11223333444568999999999
Q ss_pred ----CCCCCHHHHHHHHHHHHHHHHc--CCeEEEEecCCch------HHHhc-----cCeEEEEccCceeeecCCC
Q 042733 163 ----ISGLDARAATTVIRMVRNTVDM--GRTVVCTIHQPSI------DIFYS-----FDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 163 ----tsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H~~~~------~i~~~-----~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|||+..+.++.++++++.++ +.++++++|+.+. .+... ...++++.+ +..+..|+.
T Consensus 158 ~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK-~Dlv~~g~~ 232 (608)
T 3szr_A 158 TRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK-PDLVDKGTE 232 (608)
T ss_dssp -----CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC-GGGSSSSST
T ss_pred cccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc-hhhcCcccH
Confidence 9999999999999999997543 6778889998762 12222 245777875 777777764
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.7e-18 Score=172.35 Aligned_cols=155 Identities=14% Similarity=0.147 Sum_probs=98.6
Q ss_pred EEEEEeEEEEEeCCCccccccEE---------EEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcc-
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLS---------GAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFAR- 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs---------~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~- 93 (531)
.|+++||+++|+ +.+|+++| +.+||+|||||||+|+|+|.. . |+|...+.... ....+.
T Consensus 101 ~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~----G~I~~~v~q~~~lf~~ti~~~ 172 (305)
T 2v9p_A 101 FFNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-G----GSVLSFANHKSHFWLASLADT 172 (305)
T ss_dssp HHHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-T----CEEECGGGTTSGGGGGGGTTC
T ss_pred eEEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-C----ceEEEEecCccccccccHHHH
Confidence 367788888774 35666555 556666999999999999976 3 45543322110 112332
Q ss_pred eEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHh-c--CCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 042733 94 ILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMEL-V--ELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARA 170 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~-l--~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~ 170 (531)
.+++.++. + . .+.+.++. + +++ ..+.+.||||| ||||+.+|+||| |++||+.+
T Consensus 173 ni~~~~~~-------~-----~----~~~~~i~~~L~~gld-g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~ 228 (305)
T 2v9p_A 173 RAALVDDA-------T-----H----ACWRYFDTYLRNALD-GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQA 228 (305)
T ss_dssp SCEEEEEE-------C-----H----HHHHHHHHTTTGGGG-TCCEECCCSSC---CCCEECCCCEEE----EESSCSTT
T ss_pred hhccCccc-------c-----H----HHHHHHHHHhHccCC-ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHH
Confidence 45554321 1 0 11222332 1 222 22344499999 999999999999 99999999
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCCchhHHHHHHhh
Q 042733 171 ATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYFEKI 235 (531)
Q Consensus 171 ~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~~~~~~~~f~~~ 235 (531)
+..+.. .+|+++ ....+|++ +|++ |++++.|+. +++..+|.++
T Consensus 229 ~~~i~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~----~el~~~y~~l 271 (305)
T 2v9p_A 229 EDRYLY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITD----ADWKSFFVRL 271 (305)
T ss_dssp CGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH----HHHHHHHHHS
T ss_pred HHHHHH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCH----HHHHHHHHHH
Confidence 988752 178865 35789999 9986 999999986 3445566654
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-17 Score=161.26 Aligned_cols=143 Identities=13% Similarity=-0.025 Sum_probs=89.1
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch----hhhcceEEEEecCCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ----ETFARILGYCEQNDIH 104 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~----~~~~~~igyv~Q~~~~ 104 (531)
+++|+++.++. ..+.+.+||+|||||||+|+|+|..+ |++.+ |.+... ...++.++|++|++..
T Consensus 12 ~l~~isl~i~~------G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (218)
T 1z6g_A 12 SGLVPRGSMNN------IYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTI 79 (218)
T ss_dssp ----------C------CCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHH
T ss_pred cccCCceecCC------CCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHH
Confidence 67888888853 24678899999999999999999764 34555 443211 1134567899998655
Q ss_pred CCCCcH----------HhHH-HHHHHHHHHHHHhcCCchh-hhccHHHHHHHHH-----HHHHhhCCCeEEEeCCCCCCC
Q 042733 105 SPHDTL----------YDFT-HCLYMFIEEGMELVELNPF-RQALFEQRKRLTV-----AVEFVANPSIISRDEPISGLD 167 (531)
Q Consensus 105 ~~~ltv----------~e~~-~~~~~~~~~~l~~l~l~~~-~~~~~GerqRv~i-----A~aL~~~p~lllLDEPtsgLD 167 (531)
++.++. .++. ......++++++...+.-. .+...|||||+++ +++++.+|++++|||||+++|
T Consensus 80 ~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d 159 (218)
T 1z6g_A 80 FEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRN 159 (218)
T ss_dssp HHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTC
T ss_pred HHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcC
Confidence 543321 1110 0001234555554332110 2223499999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 042733 168 ARAATTVIRMVRNTVD 183 (531)
Q Consensus 168 ~~~~~~i~~~L~~l~~ 183 (531)
..+...+.+.+++..+
T Consensus 160 ~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 160 TENQEQIQKRMEQLNI 175 (218)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999988887654
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.9e-15 Score=140.68 Aligned_cols=147 Identities=15% Similarity=0.067 Sum_probs=89.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC--CCCCc---eEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAG--RKPGG---YITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMF 120 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G--~~~~g---~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~ 120 (531)
..+.+.+||||||||||+++|+| ..+++ ...+.+.+++..... .+.+++++|+..+.+. ++.+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~-------- 92 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLK-------- 92 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHH--------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhh--------
Confidence 36889999999999999999999 33211 123466666653211 1123444554433321 2222
Q ss_pred HHHHHHhcCCchhhhccHHHHHHHHHHHHHhh-------CCCeEEEeCCCCCCCHH-------H-----HHHHHHHHHHH
Q 042733 121 IEEGMELVELNPFRQALFEQRKRLTVAVEFVA-------NPSIISRDEPISGLDAR-------A-----ATTVIRMVRNT 181 (531)
Q Consensus 121 ~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~-------~p~lllLDEPtsgLD~~-------~-----~~~i~~~L~~l 181 (531)
.+.+... .....+++++..+.+++. +|+++++||||+++|+. . ..++++.|+++
T Consensus 93 ------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~ 165 (231)
T 4a74_A 93 ------HIYVARA-FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRL 165 (231)
T ss_dssp ------TEEEEEC-CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred ------cEEEEec-CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 1111100 001123444555666655 99999999999999984 2 23678888887
Q ss_pred HH-cCCeEEEEecCCch---HHHhccCeEEEEcc
Q 042733 182 VD-MGRTVVCTIHQPSI---DIFYSFDELFLLKQ 211 (531)
Q Consensus 182 ~~-~g~tvi~~~H~~~~---~i~~~~d~v~lL~~ 211 (531)
++ .|.|||+++|.... .+...+|+++.|.+
T Consensus 166 ~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 166 ANLYDIAVFVTNQVQANGGHILAHSATLRVYLRK 199 (231)
T ss_dssp HHHHTCEEEEEEECC---------CCSEEEEEEE
T ss_pred HHHCCCeEEEEeecccCcchhhHhhceEEEEEEe
Confidence 75 49999999995431 25668999999985
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-14 Score=143.49 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=85.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
++.+.+||+|||||||+++|+|..++. .+|+|.++|.+.... .+...++++|.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i~~~-~~~~~~~v~q~------------------------- 78 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYV-FKHKKSIVNQR------------------------- 78 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSCCSC-CCCSSSEEEEE-------------------------
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcceee-cCCcceeeeHH-------------------------
Confidence 577899999999999999999964310 147888887664211 12223344442
Q ss_pred hcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeE
Q 042733 127 LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDEL 206 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v 206 (531)
.++++. ..-|++||++|..+|+++++|||| |+.+...++ +. ++.|.+|++++|+.+ ....+||+
T Consensus 79 ~~gl~~-------~~l~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri 142 (261)
T 2eyu_A 79 EVGEDT-------KSFADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRI 142 (261)
T ss_dssp EBTTTB-------SCHHHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHH
T ss_pred HhCCCH-------HHHHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHH
Confidence 223221 112899999999999999999999 998876544 33 356999999999976 46778888
Q ss_pred EEEc
Q 042733 207 FLLK 210 (531)
Q Consensus 207 ~lL~ 210 (531)
+.|.
T Consensus 143 ~~l~ 146 (261)
T 2eyu_A 143 VDIF 146 (261)
T ss_dssp HHTS
T ss_pred hhhc
Confidence 7775
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-15 Score=164.21 Aligned_cols=151 Identities=15% Similarity=0.026 Sum_probs=100.1
Q ss_pred cEEEEEcCCCchHHHHHHH--HhCCCCCceEEEEEEEcCcccch--hhhcceEEEEecCCCCCCC---CcHHhHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDV--LAGRKPGGYITRNITVSGYPEKQ--ETFARILGYCEQNDIHSPH---DTLYDFTHCLYM 119 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~--L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~igyv~Q~~~~~~~---ltv~e~~~~~~~ 119 (531)
.+.+.+||||||||||+++ ++|..+++ +|.+.++|.+... ...++.+||++|+....+. .++.+. .
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~--~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~-----~ 112 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPD-----P 112 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCC-----S
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcc-----c
Confidence 3455667779999999999 67864422 4789999976422 1234568999987432111 111100 0
Q ss_pred HHHHHHHhcCCchhhhccHHHHHHHHHHHHHh-hCCCeEEEeCCCC-----CCCHHHHHHHHHHHHHHHHcCCeEEEEec
Q 042733 120 FIEEGMELVELNPFRQALFEQRKRLTVAVEFV-ANPSIISRDEPIS-----GLDARAATTVIRMVRNTVDMGRTVVCTIH 193 (531)
Q Consensus 120 ~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~-~~p~lllLDEPts-----gLD~~~~~~i~~~L~~l~~~g~tvi~~~H 193 (531)
...++++.+++ ++ +.-.+..+|. .+|++++|||||+ +||+..++.+.++++.++++|+|||+++|
T Consensus 113 ~~~~~l~~~~l--------~~-~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH 183 (525)
T 1tf7_A 113 EGQEVVGGFDL--------SA-LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTE 183 (525)
T ss_dssp SCCSCCSSHHH--------HH-HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred chhhhhcccCH--------HH-HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 00011111111 22 3444555554 7899999999998 56999999999999999888999999999
Q ss_pred CCchH--------HHhccCeEEEEccCce
Q 042733 194 QPSID--------IFYSFDELFLLKQVGQ 214 (531)
Q Consensus 194 ~~~~~--------i~~~~d~v~lL~~~G~ 214 (531)
+++.. ...+||+|++|++ |+
T Consensus 184 ~~~~~~~~~~~~i~~~laD~vi~L~~-~~ 211 (525)
T 1tf7_A 184 RIEEYGPIARYGVEEFVSDNVVILRN-VL 211 (525)
T ss_dssp CSSSSSCSSTTSCHHHHCSEEEEEEE-EC
T ss_pred CCCCccccccccceeeeeeEEEEEEE-Ec
Confidence 98742 2345999999986 54
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-15 Score=152.75 Aligned_cols=152 Identities=12% Similarity=-0.028 Sum_probs=75.7
Q ss_pred EeEEEEEeCCCccccccEEE---EEcCCCchHHHHHHHHhCC-CCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCC
Q 042733 31 NEIVYSVDMPQIGDLNSLSG---AFRPGGAGKTTLMDVLAGR-KPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSP 106 (531)
Q Consensus 31 ~~ls~~~~~~~~~iL~~vs~---~i~~gGaGKTTLLk~L~G~-~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~ 106 (531)
+||+++|+ ++.+++++++ .+||+|||||||+++|.|. ..+ .+| +.++|.+.......+.+++++|++....
T Consensus 2 ~~l~~~~~--~~~~l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~--~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~ 76 (301)
T 2qnr_A 2 SNLPNQVH--RKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYP--ERV-ISGAAEKIERTVQIEASTVEIEERGVKL 76 (301)
T ss_dssp ------------------CEEEEEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCE
T ss_pred CCCcceEC--CEEEEcCCCEEEEEECCCCCCHHHHHHHHhCCCccC--CCC-cccCCcccCCcceEeeEEEEecCCCccc
Confidence 36777774 4568888876 6799999999999999996 331 345 6666654322111345789999887777
Q ss_pred CCcHHhHHHHH---------HHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHH
Q 042733 107 HDTLYDFTHCL---------YMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPIS-GLDARAATTVIR 176 (531)
Q Consensus 107 ~ltv~e~~~~~---------~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPts-gLD~~~~~~i~~ 176 (531)
.+|+.++.... ....+.+.+..+ ....+...|||||+.+||+++ ++++||||+ |||+... +
T Consensus 77 ~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~-~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~ 147 (301)
T 2qnr_A 77 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFE-RYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----A 147 (301)
T ss_dssp EEEEEEEC-----------CTTHHHHHHHHHH-HHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----H
T ss_pred CcchhhhhhhhhhcCcHHHHHHHHHHHHHHHH-HHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----H
Confidence 78887762210 011111111100 112233338999998888875 999999998 5999873 5
Q ss_pred HHHHHHHc-CCeEEEEecCCc
Q 042733 177 MVRNTVDM-GRTVVCTIHQPS 196 (531)
Q Consensus 177 ~L~~l~~~-g~tvi~~~H~~~ 196 (531)
.++++.++ +.++|++.||..
T Consensus 148 ~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 148 FMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHhcCCEEEEEEeCCCC
Confidence 56666544 778899999864
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.9e-15 Score=148.23 Aligned_cols=104 Identities=13% Similarity=-0.013 Sum_probs=78.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHH----------H
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTH----------C 116 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~----------~ 116 (531)
.+.+.+||+|||||||+|+|+|..++. +|. +.+++++|++.+++. |+.|+.. .
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~~~ 153 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHRKGFPESY 153 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGGGB
T ss_pred EEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHhcCCChHH
Confidence 578999999999999999999964320 111 458999999988887 8887511 1
Q ss_pred HHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 042733 117 LYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDA 168 (531)
Q Consensus 117 ~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~ 168 (531)
....+.+.++.++ .+..+..+ ||+||+++|++++.+|+|||||||+..+|+
T Consensus 154 d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 154 NRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp CHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1234566677666 33332322 999999999999999999999999999986
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-14 Score=146.93 Aligned_cols=142 Identities=12% Similarity=0.069 Sum_probs=96.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhh--cceEEEEecCCCCCCCCcHHhHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETF--ARILGYCEQNDIHSPHDTLYDFTHCL 117 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~--~~~igyv~Q~~~~~~~ltv~e~~~~~ 117 (531)
.+-+.+||||||||||+++|+|...+ ..|+|.+.|.+... ..+ ++.++|++|+....|..++.++....
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999995332 13678888876421 112 34589999998888888888763321
Q ss_pred HHH-HH-HHHHhcCCchhhhccH--HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEe
Q 042733 118 YMF-IE-EGMELVELNPFRQALF--EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTI 192 (531)
Q Consensus 118 ~~~-~~-~~l~~l~l~~~~~~~~--GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~ 192 (531)
... .+ .+++..|..+..+... .++||++|||+++.+|+.++| .||+.+...+++.++++.+. |.|+|++|
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivT 255 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVT 255 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 110 01 0223334443333333 468999999999999994444 45555555667777777654 99999999
Q ss_pred cCC
Q 042733 193 HQP 195 (531)
Q Consensus 193 H~~ 195 (531)
|+.
T Consensus 256 h~d 258 (304)
T 1rj9_A 256 KLD 258 (304)
T ss_dssp CTT
T ss_pred CCc
Confidence 974
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.3e-14 Score=160.05 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHH-cCCeEEEEecCCchHHHhccCe
Q 042733 138 FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVI-RMVRNTVD-MGRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 138 ~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~-~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~ 205 (531)
.|++|++.|+++ +.+|+++||||||+|||+.....+. .+++.+++ .|.|+|++||+++ +.+++|+
T Consensus 738 ~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~ 804 (918)
T 3thx_B 738 EELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHH
T ss_pred HHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhh
Confidence 378899988888 8999999999999999999999987 77778865 5999999999965 4455554
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-14 Score=148.00 Aligned_cols=174 Identities=14% Similarity=0.149 Sum_probs=115.1
Q ss_pred eEEEEEeEEEEEeCCCccccccE--------EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---------
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSL--------SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--------- 88 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~v--------s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--------- 88 (531)
..++.+++++.|+. ...+|+++ -+.+||||||||||+++|+|..++ ..|.+.+.|.+..+
T Consensus 44 ~~i~~~~l~~~~~t-g~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~--~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 44 DPLLRQVIDQPFIL-GVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASA--DIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CSTTCCCCCSEECC-SCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCeeecccceecCC-CCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEEecccHHHHHHHHHhhh
Confidence 34678888888852 23466554 455556699999999999997654 25788888864211
Q ss_pred -hhhcceEEEEecCCCCCCCCcHHhHHH--HHHHHHHHHHHhcCC------chhhhccHHHHHHHHHHHHHhhCCCeEEE
Q 042733 89 -ETFARILGYCEQNDIHSPHDTLYDFTH--CLYMFIEEGMELVEL------NPFRQALFEQRKRLTVAVEFVANPSIISR 159 (531)
Q Consensus 89 -~~~~~~igyv~Q~~~~~~~ltv~e~~~--~~~~~~~~~l~~l~l------~~~~~~~~GerqRv~iA~aL~~~p~lllL 159 (531)
..+++.+.++.|.+.. ..+... .......+.....+. +...+...|| ||+++| +.+|++
T Consensus 121 ~~~~~~~v~~~~~~~~~-----~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~--- 188 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDRP-----ALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV--- 188 (347)
T ss_dssp HHHHTTEEEEEECTTSC-----HHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC---
T ss_pred hhhhhceEEEEECCCCC-----HHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc---
Confidence 1244568888876431 111100 000011111111110 1122222388 899999 688887
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH--cCC-----eEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 160 DEPISGLDARAATTVIRMVRNTVD--MGR-----TVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 160 DEPtsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+|||+....++.++++++.+ +|. ||++++||.+ ...||+++++.+ |+++..|++
T Consensus 189 ---t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 189 ---RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTREL 250 (347)
T ss_dssp ---BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHH
T ss_pred ---ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCH
Confidence 999999999999999999874 477 8999999987 346899999986 999988764
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.8e-14 Score=134.83 Aligned_cols=153 Identities=10% Similarity=0.011 Sum_probs=92.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhc---ceEEEEecCCCCCCCCcHHhHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFA---RILGYCEQNDIHSPHDTLYDFTHCLYMFIEE 123 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~---~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~ 123 (531)
.+.+.+||+|||||||++.|++.... ..|.+.+.+.+....... +.+++.+|+.... .+.+.+..... ..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~- 96 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLIIIDALMKE---KE- 96 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEEEECCC--------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEEEeccccc---cC-
Confidence 57788999999999999999984311 013444444332221111 1233333321100 11111100000 00
Q ss_pred HHHhcCCchhhhccHHHHHHHHHHHHHhhCCC--eEEEeCCCCCC--CHHHHHHHHHHHHHHHH-cCCeEEEEecCCc--
Q 042733 124 GMELVELNPFRQALFEQRKRLTVAVEFVANPS--IISRDEPISGL--DARAATTVIRMVRNTVD-MGRTVVCTIHQPS-- 196 (531)
Q Consensus 124 ~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~--lllLDEPtsgL--D~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~-- 196 (531)
..... .....+++++...+.....+|+ ++++||||+++ |+..+.++++.|+++++ .|.|||+++|+..
T Consensus 97 --~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~ 171 (235)
T 2w0m_A 97 --DQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITT 171 (235)
T ss_dssp --CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----
T ss_pred --ceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 00000 1113477777777777778999 99999999887 99999999999999875 4999999999973
Q ss_pred -----hHHHhccCeEEEEcc
Q 042733 197 -----IDIFYSFDELFLLKQ 211 (531)
Q Consensus 197 -----~~i~~~~d~v~lL~~ 211 (531)
..+.+.||++++|.+
T Consensus 172 ~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 172 SQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp ------CHHHHCSEEEEEEE
T ss_pred ccccccchheeeeEEEEEEE
Confidence 236778999999975
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=7.3e-14 Score=144.24 Aligned_cols=123 Identities=18% Similarity=0.193 Sum_probs=82.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l 125 (531)
+++-+.+||+||||||||++|+|..++. ..|.+...+.+.. ...+...+++.|........+..+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~~~~~~~~------------- 187 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIE-FVHESKKCLVNQREVHRDTLGFSE------------- 187 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTBSCHHH-------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHH-hhhhccccceeeeeeccccCCHHH-------------
Confidence 3678999999999999999999964310 0133333333321 122333456666543322222211
Q ss_pred HhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCe
Q 042733 126 ELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 126 ~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~ 205 (531)
+||++|.++|++|++|||| |..+. +.+.++++.|.+|++++|+.+. ...+||
T Consensus 188 -------------------~La~aL~~~PdvillDEp~---d~e~~----~~~~~~~~~G~~vl~t~H~~~~--~~~~dR 239 (356)
T 3jvv_A 188 -------------------ALRSALREDPDIILVGEMR---DLETI----RLALTAAETGHLVFGTLHTTSA--AKTIDR 239 (356)
T ss_dssp -------------------HHHHHTTSCCSEEEESCCC---SHHHH----HHHHHHHHTTCEEEEEESCSSH--HHHHHH
T ss_pred -------------------HHHHHhhhCcCEEecCCCC---CHHHH----HHHHHHHhcCCEEEEEEccChH--HHHHHH
Confidence 8999999999999999999 65554 4444456679999999999873 377899
Q ss_pred EEEEcc
Q 042733 206 LFLLKQ 211 (531)
Q Consensus 206 v~lL~~ 211 (531)
++.|..
T Consensus 240 li~l~~ 245 (356)
T 3jvv_A 240 VVDVFP 245 (356)
T ss_dssp HHHTSC
T ss_pred HhhhcC
Confidence 988754
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.1e-16 Score=146.66 Aligned_cols=128 Identities=16% Similarity=0.105 Sum_probs=96.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCC--CCCcHHhHHH--------H
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHS--PHDTLYDFTH--------C 116 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~--~~ltv~e~~~--------~ 116 (531)
.+-+.+||+|||||||+|+|+|...+ .++|++|++.++ ..+++.+... .
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAF 65 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCCCChhhh
Confidence 36788999999999999999996431 378888887665 4567765411 1
Q ss_pred HHHHHHHHHHhcCCchhhhc-----cHH----HHHHHHHHHHHhhCCCeEEEeCCCCC-------CCHHHHHHHHHHHHH
Q 042733 117 LYMFIEEGMELVELNPFRQA-----LFE----QRKRLTVAVEFVANPSIISRDEPISG-------LDARAATTVIRMVRN 180 (531)
Q Consensus 117 ~~~~~~~~l~~l~l~~~~~~-----~~G----erqRv~iA~aL~~~p~lllLDEPtsg-------LD~~~~~~i~~~L~~ 180 (531)
....+.+.++.+++.+..+. ..| |+||+++|++++.+|+++++||||++ ||+....++.+.+++
T Consensus 66 ~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r 145 (211)
T 3asz_A 66 DLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKR 145 (211)
T ss_dssp CHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 12345556666665443322 225 46789999999999999999999999 999999999999887
Q ss_pred H-HHcCCeEEEEecCC
Q 042733 181 T-VDMGRTVVCTIHQP 195 (531)
Q Consensus 181 l-~~~g~tvi~~~H~~ 195 (531)
. .++|+|++.++|+.
T Consensus 146 ~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 146 DVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHSCCCHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHH
Confidence 5 45699999999974
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.2e-13 Score=143.30 Aligned_cols=70 Identities=21% Similarity=0.252 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 139 EQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 139 GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |.|||++||++. +...||++++|.+
T Consensus 401 G~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~~ 472 (517)
T 4ad8_A 401 GELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVEK 472 (517)
T ss_dssp SHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEec
Confidence 8999999999999999 99999999999999999999999999987 899999999975 4557999999964
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.2e-12 Score=117.78 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=62.7
Q ss_pred hccHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 135 QALFEQRKRLTVAVEFVA----NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 135 ~~~~GerqRv~iA~aL~~----~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
..+.|||||++||++|+. +|++++|||||+|||+.++..+.+.|+++.+ +.++|++||+. .....+|+++.+.
T Consensus 64 ~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~v~ 140 (173)
T 3kta_B 64 AMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIGVS 140 (173)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEEEE
Confidence 345599999999999974 4699999999999999999999999999865 46899999985 4578899998764
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-13 Score=152.39 Aligned_cols=142 Identities=11% Similarity=-0.017 Sum_probs=90.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
++.+.+||||||||||||+|+|....+. .|..... .+..++++.| +++.+++.++...
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa--~~~~i~~~~~---i~~~~~~~d~l~~---------- 665 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPA--QKVEIGPIDR---IFTRVGAADDLAS---------- 665 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSS--SEEEECCCCE---EEEEEC-----------------
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccch--hcccceeHHH---HHhhCCHHHHHHh----------
Confidence 3556788999999999999999421000 1111111 1234566554 3445555443110
Q ss_pred hcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHH-cCCeEEEEecCCchHHHhccC
Q 042733 127 LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTV-IRMVRNTVD-MGRTVVCTIHQPSIDIFYSFD 204 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i-~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d 204 (531)
++. +..+++++++.+...+++|++++||||++|+|+.....+ ++.++.+++ .|.++|++||+++ +...+|
T Consensus 666 --~~s----tf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d 737 (800)
T 1wb9_A 666 --GRS----TFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPE 737 (800)
T ss_dssp ----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHH
T ss_pred --hhh----hhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhh
Confidence 111 122455566666777999999999999999999887775 778888887 4999999999975 456777
Q ss_pred eEEEEccCceeeecC
Q 042733 205 ELFLLKQVGQEISVG 219 (531)
Q Consensus 205 ~v~lL~~~G~~v~~G 219 (531)
++..+.+ |++.+..
T Consensus 738 ~~~~v~n-~~~~~~~ 751 (800)
T 1wb9_A 738 KMEGVAN-VHLDALE 751 (800)
T ss_dssp HSTTEEE-EEEEEEE
T ss_pred hhhceEE-EEEEEEE
Confidence 7655654 6666543
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-11 Score=115.64 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhhC-CCeEEEeCCCCCCCHHH--------HHHHHHHHHHHHHc-CCeEEEEecCCch------------
Q 042733 140 QRKRLTVAVEFVAN-PSIISRDEPISGLDARA--------ATTVIRMVRNTVDM-GRTVVCTIHQPSI------------ 197 (531)
Q Consensus 140 erqRv~iA~aL~~~-p~lllLDEPtsgLD~~~--------~~~i~~~L~~l~~~-g~tvi~~~H~~~~------------ 197 (531)
++++++.+++++.+ |+++++||||+++|+.. ..++++.|++++++ |.|||+++|....
T Consensus 91 ~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~ 170 (220)
T 2cvh_A 91 QRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQ 170 (220)
T ss_dssp HHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCH
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCc
Confidence 47789999999986 99999999999999743 34566668888764 9999999997541
Q ss_pred HHHhccCeEEEEcc
Q 042733 198 DIFYSFDELFLLKQ 211 (531)
Q Consensus 198 ~i~~~~d~v~lL~~ 211 (531)
.+...+|.+++|.+
T Consensus 171 ~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 171 TLGYRCKDILRLDK 184 (220)
T ss_dssp HHHHTSSEEEEEEE
T ss_pred ceeecCcEEEEEEE
Confidence 35678999999975
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.1e-13 Score=149.16 Aligned_cols=119 Identities=19% Similarity=0.014 Sum_probs=83.4
Q ss_pred ccccccEE------EEEcCCCchHHHHHHHHhCCC---CCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHh
Q 042733 42 IGDLNSLS------GAFRPGGAGKTTLMDVLAGRK---PGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYD 112 (531)
Q Consensus 42 ~~iL~~vs------~~i~~gGaGKTTLLk~L~G~~---~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e 112 (531)
+.+++|++ +.+||||||||||||+|+|.. ..| .+ .. ..+..+++++| +++.+++.+
T Consensus 566 ~~vl~disl~g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G----~~------vp--a~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMAHELVLITGPNMAGKSTFLRQTALIALLAQVG----SF------VP--AEEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEESSCEEEEESCSSSSHHHHHHHHHHHHHHHTTT----CC------BS--SSEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCCCcEEEEECCCCCChHHHHHHHHhhhhhcccC----ce------ee--hhccceeeHHH---hhccCCHHH
Confidence 34555555 578899999999999999952 222 11 11 11345777776 445566655
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHH--hhCCCeEEEeCC---CCCCCHHHH-HHHHHHHHHHHHcCC
Q 042733 113 FTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEF--VANPSIISRDEP---ISGLDARAA-TTVIRMVRNTVDMGR 186 (531)
Q Consensus 113 ~~~~~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL--~~~p~lllLDEP---tsgLD~~~~-~~i~~~L~~l~~~g~ 186 (531)
+.. .++ +.|+++++.+|+++ +++|++++|||| |++||+.+. ..+++.|++ .|.
T Consensus 631 ~l~------------~g~------S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~ 689 (765)
T 1ewq_A 631 DLA------------GGK------STFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRA 689 (765)
T ss_dssp ----------------CC------SHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTC
T ss_pred HHH------------hcc------cHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCC
Confidence 311 122 23789999999999 999999999999 999999875 567777765 589
Q ss_pred eEEEEecCCc
Q 042733 187 TVVCTIHQPS 196 (531)
Q Consensus 187 tvi~~~H~~~ 196 (531)
|+|++||+.+
T Consensus 690 ~vl~~TH~~~ 699 (765)
T 1ewq_A 690 YTLFATHYFE 699 (765)
T ss_dssp EEEEECCCHH
T ss_pred EEEEEeCCHH
Confidence 9999999964
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-12 Score=132.11 Aligned_cols=76 Identities=9% Similarity=0.119 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 139 EQRKRLTVAVEFV---------ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 139 GerqRv~iA~aL~---------~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
|||||++||++|+ .+|+||+|||||++||+..+..+++.++++. .|+|++||. + + .+|+++.+
T Consensus 269 Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~i~~l 340 (359)
T 2o5v_A 269 GEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAALTLRA 340 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCEEEEE
Confidence 8999999999999 8999999999999999999999999998763 689999994 4 2 78999999
Q ss_pred ccCceeeecCCCCC
Q 042733 210 KQVGQEISVGPLGP 223 (531)
Q Consensus 210 ~~~G~~v~~G~~~~ 223 (531)
++ |+++..|++++
T Consensus 341 ~~-G~i~~~g~~~~ 353 (359)
T 2o5v_A 341 QA-GRFTPVADEEM 353 (359)
T ss_dssp ET-TEEEECCCTTT
T ss_pred EC-CEEEecCCHHH
Confidence 86 99999998753
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.29 E-value=9.1e-13 Score=135.90 Aligned_cols=154 Identities=14% Similarity=0.060 Sum_probs=94.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCC--C--CceEEEE-EEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRK--P--GGYITRN-ITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMF 120 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~--~--~g~~~G~-i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~ 120 (531)
..+...+||+|||||||++.|++.. + .|...|. +.+++.... .++.+++++|...+.+. ++.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~v~--------- 197 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVL--------- 197 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-HHG---------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-HHh---------
Confidence 3578899999999999999999953 2 1111245 777776431 12345677776544321 222
Q ss_pred HHHHHHhcCCchhhhccHHHHHHHHHHHHHh-------hCCCeEEEeCCCCCCCHHH------------HHHHHHHHHHH
Q 042733 121 IEEGMELVELNPFRQALFEQRKRLTVAVEFV-------ANPSIISRDEPISGLDARA------------ATTVIRMVRNT 181 (531)
Q Consensus 121 ~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~-------~~p~lllLDEPtsgLD~~~------------~~~i~~~L~~l 181 (531)
+.+.+... ....+++|++.++++++ .+|+++++||||+++|+.. ..++++.|+++
T Consensus 198 -----~ni~~~~~-~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~l 271 (349)
T 1pzn_A 198 -----KHIYVARA-FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRL 271 (349)
T ss_dssp -----GGEEEEEC-CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred -----hCEEEEec-CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHH
Confidence 22111111 11236889999999999 6899999999999999852 35666777777
Q ss_pred HH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCC
Q 042733 182 VD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 182 ~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
++ .|.|||+++|... .....+++..... +|+++.++.
T Consensus 272 a~~~~~tvii~~h~~~-~~~~~~~~~~~~~-~G~~l~~~~ 309 (349)
T 1pzn_A 272 ANLYDIAVFVTNQVQA-RPDAFFGDPTRPI-GGHILAHSA 309 (349)
T ss_dssp HHHTTCEEEEEEECC-----------------CCCCCTTC
T ss_pred HHHcCcEEEEEccccc-ccccccCCccccC-CcceEeecC
Confidence 76 4899999999865 2323344444555 377766654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-13 Score=143.51 Aligned_cols=154 Identities=10% Similarity=-0.004 Sum_probs=86.0
Q ss_pred EEEEEeEEEEEeCCCccccccEE---EEEcCCCchHHHHHHHHhCCCC--CceEEEEEEEcCcccchhhhcceEEEEecC
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLS---GAFRPGGAGKTTLMDVLAGRKP--GGYITRNITVSGYPEKQETFARILGYCEQN 101 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs---~~i~~gGaGKTTLLk~L~G~~~--~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~ 101 (531)
.|.++||+++|+ .+.++++++ +.+|++|||||||+|+|+|... .+ .|.+.+++.+ ....+.+++++|+
T Consensus 11 ~l~~~~l~~~y~--~~~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~--~~~~~~~~~~---t~~~~~i~~v~q~ 83 (418)
T 2qag_C 11 YVGFANLPNQVY--RKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPE--YPGPSHRIKK---TVQVEQSKVLIKE 83 (418)
T ss_dssp ----CCCCCCTT--TTTCC-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCC--CCSCC--------CCEEEEEECC---
T ss_pred cEEEEecceeEC--CEEEecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCC--CCCcccCCcc---ceeeeeEEEEEec
Confidence 467888888874 456888885 5679999999999999999643 22 1111111111 1123468899998
Q ss_pred CCCCCCCcHHhHHHHHHH-----HHHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCCC---eEEEeCCC-CCCCHHHHH
Q 042733 102 DIHSPHDTLYDFTHCLYM-----FIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPS---IISRDEPI-SGLDARAAT 172 (531)
Q Consensus 102 ~~~~~~ltv~e~~~~~~~-----~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~---lllLDEPt-sgLD~~~~~ 172 (531)
+...+.+|+.++...... ....+.+.+. ...+ -+++||++||++++.+|+ +|++|||| .|||+...
T Consensus 84 ~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~--~~~~--~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~- 158 (418)
T 2qag_C 84 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID--SKFE--DYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI- 158 (418)
T ss_dssp ---CEEEEEEECC-----------CHHHHHHHH--HHHH--HHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-
T ss_pred CCcccceeeeechhhhhhccchhhHHHHHHHHH--HHHH--HHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-
Confidence 888888888877221100 0011111110 0001 156789999999999999 99999999 69998874
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCc
Q 042733 173 TVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 173 ~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+.++.+.+ +.++|+++|..+
T Consensus 159 ---~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 159 ---EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp ---HHHHHHTT-TSEEEEEEESTT
T ss_pred ---HHHHHHhc-cCcEEEEEEccc
Confidence 34445543 677888877644
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.28 E-value=6.8e-14 Score=131.83 Aligned_cols=145 Identities=14% Similarity=0.078 Sum_probs=88.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l 125 (531)
++.+.+||||||||||+++|+|..+. +| +.++|....+ ..+++.+||++|+.. ...+. +
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~~~--------------l 61 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLKS---SG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTRGP--------------L 61 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH---TT-CCCEEEECCEEETTSSEEEEEEEETT--SCEEE--------------E
T ss_pred CEEEEECCCCChHHHHHHHHHhhccc---CC-EEEcCEecchhHhhhceEEEEEEecc--cceeh--------------h
Confidence 35678999999999999999996431 24 5555543321 235778999999741 11000 0
Q ss_pred HhcCC--c---------h-hhhccHHHHHHH-HHHH---HHhhCCCeEEEeC--CCCCCCHHHHHHHHHHHHHHHHcCCe
Q 042733 126 ELVEL--N---------P-FRQALFEQRKRL-TVAV---EFVANPSIISRDE--PISGLDARAATTVIRMVRNTVDMGRT 187 (531)
Q Consensus 126 ~~l~l--~---------~-~~~~~~GerqRv-~iA~---aL~~~p~lllLDE--PtsgLD~~~~~~i~~~L~~l~~~g~t 187 (531)
..++. . . ..+...|||+++ ++++ |+..+|++++||| |+..+|......+.+++ +...+
T Consensus 62 ~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l----~~~~~ 137 (189)
T 2i3b_A 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL----STPGT 137 (189)
T ss_dssp EECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH----HCSSC
T ss_pred hcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH----hCCCc
Confidence 11111 0 0 011122677776 3344 5789999999999 89999987655554444 44445
Q ss_pred EEE----EecCCchHHHhccCeEEEEccCceeeecC
Q 042733 188 VVC----TIHQPSIDIFYSFDELFLLKQVGQEISVG 219 (531)
Q Consensus 188 vi~----~~H~~~~~i~~~~d~v~lL~~~G~~v~~G 219 (531)
+|+ ++|+.+ ....|++..+.+ |+++...
T Consensus 138 ~ilgti~vsh~~~---~~~vd~i~~~~~-~~i~~~~ 169 (189)
T 2i3b_A 138 IILGTIPVPKGKP---LALVEEIRNRKD-VKVFNVT 169 (189)
T ss_dssp CEEEECCCCCSSC---CTTHHHHHTTCC-SEEEECC
T ss_pred EEEEEeecCCCCc---hHHHHHHeecCC-cEEEEeC
Confidence 553 238764 234577766664 7777653
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-12 Score=128.66 Aligned_cols=137 Identities=19% Similarity=0.150 Sum_probs=88.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHH-----HHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHC-----LYMF 120 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~-----~~~~ 120 (531)
..+...+||+|||||||++.|++....| .+ +.|.+.. ....+.|+..++.. ..+.+.... ....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g----~~-~~g~~~~---~~~~v~~~~~e~~~---~~~~~r~~~~g~~~~~~~ 98 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGG----PD-LLEVGEL---PTGPVIYLPAEDPP---TAIHHRLHALGAHLSAEE 98 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTC----CC-TTCCCCC---CCCCEEEEESSSCH---HHHHHHHHHHHTTSCHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcC----CC-cCCCccC---CCccEEEEECCCCH---HHHHHHHHHHHhhcChhh
Confidence 4688999999999999999999843222 22 2233221 12346777665432 111110000 0112
Q ss_pred HHHHHHhcCCchhhhcc-----HHHHHHHHHHHHHhhCCCeEEEeCCCC--CCCHHHH---HHHHHHHHHHHH-cCCeEE
Q 042733 121 IEEGMELVELNPFRQAL-----FEQRKRLTVAVEFVANPSIISRDEPIS--GLDARAA---TTVIRMVRNTVD-MGRTVV 189 (531)
Q Consensus 121 ~~~~l~~l~l~~~~~~~-----~GerqRv~iA~aL~~~p~lllLDEPts--gLD~~~~---~~i~~~L~~l~~-~g~tvi 189 (531)
.++.++.+++.+..+.. .||+|++ ++++.+|+++++||||+ ++|.... .++++.|+++++ .|+|||
T Consensus 99 ~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi 175 (279)
T 1nlf_A 99 RQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIV 175 (279)
T ss_dssp HHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred hhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEE
Confidence 34456666665544332 2776654 68889999999999999 9998544 788889998875 599999
Q ss_pred EEecCCc
Q 042733 190 CTIHQPS 196 (531)
Q Consensus 190 ~~~H~~~ 196 (531)
+++|+..
T Consensus 176 ~i~H~~~ 182 (279)
T 1nlf_A 176 FLHHASK 182 (279)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9999864
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.5e-14 Score=133.03 Aligned_cols=161 Identities=15% Similarity=0.117 Sum_probs=95.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHH-HHH--
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMF-IEE-- 123 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~-~~~-- 123 (531)
.+-+.+||+|||||||+|+|++... |.+.++|.+... ....++++|.....+..++.++....... ...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~-----g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD-----NSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS-----SEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC-----CeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 3567899999999999999998432 456777654321 12346666654333344555542211100 000
Q ss_pred --HHHhcCCch----hhhc--cHHHHHHHHHHH------HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEE
Q 042733 124 --GMELVELNP----FRQA--LFEQRKRLTVAV------EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVV 189 (531)
Q Consensus 124 --~l~~l~l~~----~~~~--~~GerqRv~iA~------aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi 189 (531)
+++.+.... ..+. +.|++||+.++. ++..+|+...+|+ |||+..... ++.++.+.+.+.++|
T Consensus 75 ~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii 150 (189)
T 2bdt_A 75 DVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFY 150 (189)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEE
T ss_pred cEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEE
Confidence 011110000 0111 114455666666 8888888888884 899988888 888888766678999
Q ss_pred EEecC-CchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 190 CTIHQ-PSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 190 ~~~H~-~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
.++|+ ++ ++.+.||+|+ + +|+++..|++++
T Consensus 151 ~tsh~~~~-~~e~~~~~i~--~-~g~~~~~~~~~~ 181 (189)
T 2bdt_A 151 NTSHLQPT-NLNDIVKNLK--T-NPRFIFCMAGDP 181 (189)
T ss_dssp ECSSSCGG-GHHHHHHHHH--H-CGGGSCC-----
T ss_pred eCCCCChh-hHHHHHHHHh--h-CCcEEEeecCCc
Confidence 99998 76 5778899998 6 499999998754
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.3e-13 Score=130.57 Aligned_cols=133 Identities=11% Similarity=0.056 Sum_probs=81.8
Q ss_pred EEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCC
Q 042733 29 SLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHD 108 (531)
Q Consensus 29 ~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~l 108 (531)
.++|++++.+. ..+-+..||+|||||||+|+|+|... .+.++ ..++.++|++|++ +++.+
T Consensus 14 ~l~~isl~i~~------g~iigI~G~~GsGKSTl~k~L~~~lG------~~~~~-------~~~~~i~~v~~d~-~~~~l 73 (245)
T 2jeo_A 14 GTENLYFQSMR------PFLIGVSGGTASGKSTVCEKIMELLG------QNEVE-------QRQRKVVILSQDR-FYKVL 73 (245)
T ss_dssp ---------CC------SEEEEEECSTTSSHHHHHHHHHHHHT------GGGSC-------GGGCSEEEEEGGG-GBCCC
T ss_pred eecceeccCCC------CEEEEEECCCCCCHHHHHHHHHHHhc------hhccc-------ccCCceEEEeCCc-Ccccc
Confidence 46777777642 13577888889999999999999541 11121 2456789999985 66778
Q ss_pred cHHhHHHHH-------------HHHHHHHHHhcCCchhhh-----ccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 042733 109 TLYDFTHCL-------------YMFIEEGMELVELNPFRQ-----ALFEQRKRLTVAVEFVANPSIISRDEPISGLDARA 170 (531)
Q Consensus 109 tv~e~~~~~-------------~~~~~~~l~~l~l~~~~~-----~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~ 170 (531)
|+.++.... ...+.+.++.+ .+..+ ...||+||+.+ ++++.+|+++++|||....|..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~- 149 (245)
T 2jeo_A 74 TAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE- 149 (245)
T ss_dssp CHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH-
T ss_pred CHhHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH-
Confidence 887752110 11123333322 12122 22389999988 5788899999999998888853
Q ss_pred HHHHHHHHHHHHHcCCeEEEEecC
Q 042733 171 ATTVIRMVRNTVDMGRTVVCTIHQ 194 (531)
Q Consensus 171 ~~~i~~~L~~l~~~g~tvi~~~H~ 194 (531)
+.++ .+.+|++++|+
T Consensus 150 -------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 150 -------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp -------HHTT--CSEEEEEECCH
T ss_pred -------HHHh--cCeEEEEECCH
Confidence 1222 37899999997
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=6.4e-11 Score=123.02 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=63.7
Q ss_pred HHHHHHH------HHHHHHhhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 138 FEQRKRL------TVAVEFVAN-PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 138 ~GerqRv------~iA~aL~~~-p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
.|||||+ ++|+++..+ |++++|||||+|||+..+..+.+.|+++. ++.+||++||++. +...+|+++++.
T Consensus 283 ~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~~~l~ 359 (371)
T 3auy_A 283 GGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEEEEEE
Confidence 3999988 567888999 99999999999999999999999999874 3568999999974 567899999997
Q ss_pred cCce
Q 042733 211 QVGQ 214 (531)
Q Consensus 211 ~~G~ 214 (531)
++|.
T Consensus 360 k~~~ 363 (371)
T 3auy_A 360 KDGN 363 (371)
T ss_dssp ESSS
T ss_pred ecCC
Confidence 5443
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-12 Score=124.10 Aligned_cols=124 Identities=16% Similarity=0.104 Sum_probs=83.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
.+.+.+||||||||||+|+|+|..++....|.+.+.+.+.... .++.++|++|++..++.+++.. +.++
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~----------~f~E 85 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRD----------AFLE 85 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTT----------CEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcC----------HHHH
Confidence 5788999999999999999999754213678888888765432 3456789999754443333210 0011
Q ss_pred hcCCchhhhccHHH-HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 127 LVELNPFRQALFEQ-RKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 127 ~l~l~~~~~~~~Ge-rqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
.+.. .....|. +++ +..++..+++++|| ||+.++.++.+.+. ++.||++++|+++
T Consensus 86 ~~~~---~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 86 HAEV---FGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp EEEE---TTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHH
T ss_pred HHHH---HhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHH
Confidence 1110 0011121 222 45566779999999 99999999998876 5889999999875
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-12 Score=122.47 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=42.4
Q ss_pred HHHHH-HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCe
Q 042733 139 EQRKR-LTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRT 187 (531)
Q Consensus 139 GerqR-v~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~t 187 (531)
||||| +..+++++.+|+++++|||||++|.....++++.|.++.++|.|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 153 GARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred hhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 79999 89999999999999999999999999999999999988766544
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-11 Score=128.20 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=83.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
++.+.+||+|||||||+++|+|..++. .+|.|...+.+.. ...++.+++++|..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e-~~~~~~~~~v~Q~~------------------------ 190 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIE-YVFKHKKSIVNQRE------------------------ 190 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCC-SCCCCSSSEEEEEE------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHh-hhhccCceEEEeee------------------------
Confidence 567889999999999999999964310 0367766555543 23455678898852
Q ss_pred hcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeE
Q 042733 127 LVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDEL 206 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v 206 (531)
+|++. ... +.+|+++|..+|+++++|||+ |+.+... .++. +..|.+|+.++|+.+ +...+||+
T Consensus 191 -~g~~~--~~~-----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl 253 (372)
T 2ewv_A 191 -VGEDT--KSF-----ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRI 253 (372)
T ss_dssp -BTTTB--SCS-----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHH
T ss_pred -cCCCH--HHH-----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHH
Confidence 11111 000 568999999999999999999 7766443 3443 346899999999865 56677777
Q ss_pred EEE
Q 042733 207 FLL 209 (531)
Q Consensus 207 ~lL 209 (531)
+.|
T Consensus 254 ~~l 256 (372)
T 2ewv_A 254 VDI 256 (372)
T ss_dssp HHT
T ss_pred HHh
Confidence 655
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-10 Score=121.36 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 137 LFEQRKRLTVAVEFV----ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 137 ~~GerqRv~iA~aL~----~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
+.|||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+++.++|++||++ .....||+++.+..
T Consensus 335 S~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 335 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVYR 411 (430)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEEEE
T ss_pred CcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEEEE
Confidence 339999999999999 58999999999999999999999999999865678999999984 45678999999864
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.8e-10 Score=111.38 Aligned_cols=142 Identities=18% Similarity=0.165 Sum_probs=77.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC--CCCC---ceEEEEEEEcCccc-chh---hhcceEEEEecCCCCCCCCcHHhHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAG--RKPG---GYITRNITVSGYPE-KQE---TFARILGYCEQNDIHSPHDTLYDFTHC 116 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G--~~~~---g~~~G~i~~~g~~~-~~~---~~~~~igyv~Q~~~~~~~ltv~e~~~~ 116 (531)
..+.+.+||+|||||||++.|++ ..++ +...|.+.+++... ... ...+.+++.+|+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--------------- 88 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--------------- 88 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH---------------
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH---------------
Confidence 36889999999999999999999 3321 01135667766542 111 112223333221
Q ss_pred HHHHHHHHHHhcCCchhhhccHHH-HHHHHHHHHHh--hCCCeEEEeCCCCCCCHH-------H-----HHHHHHHHHHH
Q 042733 117 LYMFIEEGMELVELNPFRQALFEQ-RKRLTVAVEFV--ANPSIISRDEPISGLDAR-------A-----ATTVIRMVRNT 181 (531)
Q Consensus 117 ~~~~~~~~l~~l~l~~~~~~~~Ge-rqRv~iA~aL~--~~p~lllLDEPtsgLD~~-------~-----~~~i~~~L~~l 181 (531)
.++.+.+.. .....+ .+.+.-+.+++ .+|+++++|||++.+|+. . ..++++.|+++
T Consensus 89 -------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~ 159 (243)
T 1n0w_A 89 -------VLDNVAYAR--AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRL 159 (243)
T ss_dssp -------HHHTEEEEE--CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHH
T ss_pred -------HhhCeEEEe--cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 111110000 000111 12222233333 589999999999999985 3 34566667776
Q ss_pred HHc-CCeEEEEecCCchH------------------HHhccCeEEEEcc
Q 042733 182 VDM-GRTVVCTIHQPSID------------------IFYSFDELFLLKQ 211 (531)
Q Consensus 182 ~~~-g~tvi~~~H~~~~~------------------i~~~~d~v~lL~~ 211 (531)
+++ |.|||+++|..... +...+|.+++|.+
T Consensus 160 ~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 160 ADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp HHHHCCEEEEEC-------------------------CCTTCEEEEEEE
T ss_pred HHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 654 99999999964321 2226899999975
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-12 Score=133.47 Aligned_cols=138 Identities=12% Similarity=0.032 Sum_probs=90.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCc------eEEEEEEEcCcccch------------------hhhcceEEEE---e
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGG------YITRNITVSGYPEKQ------------------ETFARILGYC---E 99 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g------~~~G~i~~~g~~~~~------------------~~~~~~igyv---~ 99 (531)
.+....|++|||||||+|.|.|..++. ...|++.++|.+... ..+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 367788999999999999999965210 123566666654321 1234456776 5
Q ss_pred cCCCCCCCCcHHhHH-----HHH-H-----HH------HHHHHHhcCCchhhhc----cHHHHHHHHHHHHHhhCCCeEE
Q 042733 100 QNDIHSPHDTLYDFT-----HCL-Y-----MF------IEEGMELVELNPFRQA----LFEQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 100 Q~~~~~~~ltv~e~~-----~~~-~-----~~------~~~~l~~l~l~~~~~~----~~GerqRv~iA~aL~~~p~lll 158 (531)
|+..+.+..++.|+. ... . .. ++.++..+++.+..+. ..|||||+..+++++.+|+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~- 163 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA- 163 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTC-
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccC-
Confidence 776666677777651 110 0 00 1112334444444333 349999998888888999987
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 159 RDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 159 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
||| .++.+.++++. .+.+|++++|++.
T Consensus 164 -de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 164 -GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp -SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred -CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 998 67888888874 5889999999864
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.6e-10 Score=102.11 Aligned_cols=45 Identities=7% Similarity=0.111 Sum_probs=37.9
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCe-EEEEecCCc
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRT-VVCTIHQPS 196 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~t-vi~~~H~~~ 196 (531)
+.+|++|++|||++ +|...++.+.+++.++.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 56799999999998 6666688899999998888888 899999654
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.6e-12 Score=124.60 Aligned_cols=130 Identities=14% Similarity=0.176 Sum_probs=79.6
Q ss_pred cEEEEEcCCCchHHHHHHHHh---CCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHH-----
Q 042733 47 SLSGAFRPGGAGKTTLMDVLA---GRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLY----- 118 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~---G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~----- 118 (531)
.+-+.+||+|||||||+|+|+ |... ...|++..+|.+.. ....+.+++++|+..+.+..++.++.....
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~ 104 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRG 104 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 578899999999999999999 9764 23455555543221 112233445566666667667665422100
Q ss_pred ------------HHHHHHHH--hcC------------CchhhhccH----HHHHHHHHHHHH-hhCCCeEEEe----CCC
Q 042733 119 ------------MFIEEGME--LVE------------LNPFRQALF----EQRKRLTVAVEF-VANPSIISRD----EPI 163 (531)
Q Consensus 119 ------------~~~~~~l~--~l~------------l~~~~~~~~----GerqRv~iA~aL-~~~p~lllLD----EPt 163 (531)
..++...+ ..+ +....++.+ | |+ +++ +.+|++++|| |||
T Consensus 105 ~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg---rv---~al~~~~P~~lllD~~~~EP~ 178 (246)
T 2bbw_A 105 QHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG---RV---YNLDFNPPHVHGIDDVTGEPL 178 (246)
T ss_dssp SCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT---EE---EETTTSCCSSTTBCTTTCCBC
T ss_pred CeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC---Cc---cccccCCCccccccccccccc
Confidence 00111110 111 001111110 2 33 455 8999999999 999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcC
Q 042733 164 SGLDARAATTVIRMVRNTVDMG 185 (531)
Q Consensus 164 sgLD~~~~~~i~~~L~~l~~~g 185 (531)
+|||+.+...+.+.++++.+++
T Consensus 179 ~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 179 VQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp BCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999887654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.92 E-value=3.9e-10 Score=115.52 Aligned_cols=134 Identities=11% Similarity=0.002 Sum_probs=69.7
Q ss_pred EEEEcCCCchHHHHHHHHhC-CCCCceEEEEEEEcCcccch-hhhcceEEEEecCCCCCCCCcHHhH--HHHHHHHHHHH
Q 042733 49 SGAFRPGGAGKTTLMDVLAG-RKPGGYITRNITVSGYPEKQ-ETFARILGYCEQNDIHSPHDTLYDF--THCLYMFIEEG 124 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G-~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv~Q~~~~~~~ltv~e~--~~~~~~~~~~~ 124 (531)
-+..||+|+|||||+++|+| ...+. .|.+.++|.+... ...+..+++++|.+.+.....-... ....+..+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 116 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG--VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEV 116 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT--CCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC--CCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHH
Confidence 57789999999999999999 33321 3566666654321 1124557788876543211110000 00111122222
Q ss_pred HHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCch
Q 042733 125 MELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSI 197 (531)
Q Consensus 125 l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 197 (531)
.+..++.+.. .+ ..+..+|+++++|||++ ||+.++..+.+.+.+.. .+.++|+++|+++.
T Consensus 117 ~~~~~~~~~~----------~l-s~l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 117 AQMEQVDFQD----------SK-DGLAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP 176 (354)
T ss_dssp TTTTC-----------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS
T ss_pred HHhccccccc----------cc-cccCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHH
Confidence 2222221111 00 11677999999999999 99999999999998753 36789999999763
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=4.7e-11 Score=123.75 Aligned_cols=158 Identities=9% Similarity=0.021 Sum_probs=90.3
Q ss_pred ccccEEEEEcCCCchHHHHHHHHhCCCCCceEE----EEEEEc----Cccc--chhhhcceEEEEecCCCCCCCCcHHhH
Q 042733 44 DLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYIT----RNITVS----GYPE--KQETFARILGYCEQNDIHSPHDTLYDF 113 (531)
Q Consensus 44 iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~----G~i~~~----g~~~--~~~~~~~~igyv~Q~~~~~~~ltv~e~ 113 (531)
.|....+.+||+|||||||+|+|+|..+. .. |.+.++ |.+. ....+ +.+++++|+...+ ..|+.++
T Consensus 168 ~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~~-~~t~~~n 243 (365)
T 1lw7_A 168 FFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYIDY-AVRHSHK 243 (365)
T ss_dssp GTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHHH-HHHHCSS
T ss_pred hhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHHH-HHhccCC
Confidence 45677899999999999999999997653 23 343332 1111 00111 1233333321100 0011110
Q ss_pred HHHHHHHHHHHHHhcCCchhhhc-----cHHHHHHHHHHHHHh-hCCCeEEEeC---CC------CCCCHHHHHHHHHHH
Q 042733 114 THCLYMFIEEGMELVELNPFRQA-----LFEQRKRLTVAVEFV-ANPSIISRDE---PI------SGLDARAATTVIRMV 178 (531)
Q Consensus 114 ~~~~~~~~~~~l~~l~l~~~~~~-----~~GerqRv~iA~aL~-~~p~lllLDE---Pt------sgLD~~~~~~i~~~L 178 (531)
+...+ .+..+. ..|++||..+++++. .+|++++||| |+ .++|+..+..+.+.|
T Consensus 244 -----------l~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l 311 (365)
T 1lw7_A 244 -----------IAFID-TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLL 311 (365)
T ss_dssp -----------EEEES-SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHH
T ss_pred -----------EEEEe-CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHH
Confidence 11111 111111 125677777887764 5999999999 65 589999999999999
Q ss_pred HHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 179 RNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 179 ~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+++.+ .|.+|++++|. + +..+.+|++.++++ ++..|.++
T Consensus 312 ~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~~---~l~~~~~~ 351 (365)
T 1lw7_A 312 KKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIEK---VLNEEEIS 351 (365)
T ss_dssp HHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHHH---HTSCCCCS
T ss_pred HHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHHH---Hhcccchh
Confidence 98765 48999999974 3 34566777766642 45555544
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-10 Score=108.49 Aligned_cols=122 Identities=10% Similarity=-0.002 Sum_probs=74.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchh-hhcceEEEEecCCCCCCCCcHHhHHHHHHHHHH---
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQE-TFARILGYCEQNDIHSPHDTLYDFTHCLYMFIE--- 122 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~-~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~--- 122 (531)
.+-+.+||+|||||||+|+|+|.... |.+.++|.+.... ..++.++|++|+.. +..++.++.........
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~----g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~~ 83 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGV----PKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAKEG 83 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSS----CEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCC----CeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHhccC
Confidence 46788999999999999999998543 5788887653221 11234567776543 34566554221111000
Q ss_pred ------HHHHhcCCchhh--hc-----cHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 042733 123 ------EGMELVELNPFR--QA-----LFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV 182 (531)
Q Consensus 123 ------~~l~~l~l~~~~--~~-----~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~ 182 (531)
..++..++.... +. ..|++||+.++|++..+|+++ +|+...+.+.+.++.+.
T Consensus 84 ~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~ 148 (191)
T 1zp6_A 84 YFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG 148 (191)
T ss_dssp CEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred CeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence 000111222222 11 128999999999999999876 68887777777665543
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=7.2e-09 Score=95.82 Aligned_cols=47 Identities=13% Similarity=0.098 Sum_probs=42.2
Q ss_pred hhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEEecCCch
Q 042733 151 VANPSIISRDEPIS-GLDARAATTVIRMVRNTVDMGRTVVCTIHQPSI 197 (531)
Q Consensus 151 ~~~p~lllLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 197 (531)
+.+|++|+||||++ ++|+..+..+.+++....++|+++|++||.+..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 45999999999985 999999999999999888789999999998753
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-09 Score=111.70 Aligned_cols=123 Identities=19% Similarity=0.115 Sum_probs=85.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc-hhhhcceEEEEe-cCCCCCCCCcHHhHHHHHHHHHHHHH
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-QETFARILGYCE-QNDIHSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-~~~~~~~igyv~-Q~~~~~~~ltv~e~~~~~~~~~~~~l 125 (531)
+.+.+||+|||||||+|+|+|..++ ..|.|.++|.... ....++.++|++ |++..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~--------------------- 233 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE--------------------- 233 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC--------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc---------------------
Confidence 4566777799999999999997654 2578888875321 122567789998 65321
Q ss_pred HhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCe
Q 042733 126 ELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDE 205 (531)
Q Consensus 126 ~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~ 205 (531)
+. ..+..+|..|+.++..+|+.+++||+.. .+..+.++.+.....|++.++|..+ ....+||
T Consensus 234 ---~~------~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~R 295 (361)
T 2gza_A 234 ---EE------NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS--CELTFER 295 (361)
T ss_dssp --------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHH
T ss_pred ---cc------ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHH
Confidence 00 0123457778888889999999999986 3455667666554568899999965 5677899
Q ss_pred EEEEcc
Q 042733 206 LFLLKQ 211 (531)
Q Consensus 206 v~lL~~ 211 (531)
+..+..
T Consensus 296 l~~l~~ 301 (361)
T 2gza_A 296 LALMVL 301 (361)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988875
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-09 Score=113.26 Aligned_cols=139 Identities=14% Similarity=0.074 Sum_probs=88.1
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhH--------HH-----
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDF--------TH----- 115 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~--------~~----- 115 (531)
.+.+||||||||||+|+|+|..-.| .. +.... ....++.++|++|++.+++.+|+.++ ..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~l~g----~~-~~~~~--~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~ 117 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTKFEG----EP-ATHTQ--PGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKP 117 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSCC------------CC--SSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHH
T ss_pred EEEECCCCCCHHHHHHHHhCccccC----Cc-CCCCC--ccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhH
Confidence 5778999999999999999974221 11 11111 11224578999999887777787765 00
Q ss_pred ---HHHHHHHHHHHhc-CCch----hhhcc----H--------H-HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 042733 116 ---CLYMFIEEGMELV-ELNP----FRQAL----F--------E-QRKRLTVAVEFVANPSIISRDEPISGLDARAATTV 174 (531)
Q Consensus 116 ---~~~~~~~~~l~~l-~l~~----~~~~~----~--------G-erqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i 174 (531)
......++.++.. ++.. ..+.. + | ...=+.|+++|..+++++++|||+..|.+.....+
T Consensus 118 i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l 197 (427)
T 2qag_B 118 IVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKF 197 (427)
T ss_dssp HHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHH
Confidence 1122333444433 3321 11111 1 1 11227899999999999999999999999999999
Q ss_pred HHHHHH-HHHcCCeEEEEecC
Q 042733 175 IRMVRN-TVDMGRTVVCTIHQ 194 (531)
Q Consensus 175 ~~~L~~-l~~~g~tvi~~~H~ 194 (531)
.+.+++ +...|.+|+.++.+
T Consensus 198 ~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 198 KIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHcCCcEEecCCC
Confidence 999886 77779998887754
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.6e-10 Score=115.27 Aligned_cols=137 Identities=14% Similarity=0.079 Sum_probs=88.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhhcc--eEEEEecCCCCCCCCcHHhHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETFAR--ILGYCEQNDIHSPHDTLYDFTHCL 117 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~~~--~igyv~Q~~~~~~~ltv~e~~~~~ 117 (531)
.+-+.+||||||||||+++|+|...+ ..|+|.+.|.+... ..+++ .+.+++|+....|..+++++....
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 57899999999999999999995321 13577777765421 11222 355999998888888888863321
Q ss_pred HHH-HHH-HHHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecC
Q 042733 118 YMF-IEE-GMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQ 194 (531)
Q Consensus 118 ~~~-~~~-~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~ 194 (531)
... .+. +++..|..+..+....|- -.+++++..++++++||.+|. ..+++.++.+.+ .+.|+|++||.
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL--~~i~ral~~de~llvLDa~t~-------~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEM--KKIARVTKPNLVIFVGDALAG-------NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHH--HHHHHHHCCSEEEEEEEGGGT-------THHHHHHHHHHHHSCCCEEEEECG
T ss_pred HhccchhhHHhhccchhHHHHHHHHH--HHHHHHhcCCCCEEEEecHHH-------HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 110 000 123334433333333333 348899988888888885554 355566666664 48999999995
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-09 Score=111.71 Aligned_cols=102 Identities=17% Similarity=0.110 Sum_probs=69.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCC-CceEEEEEEEc-CcccchhhhcceEEEEecCCCCCCCCcHHhH------HHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKP-GGYITRNITVS-GYPEKQETFARILGYCEQNDIHSPHDTLYDF------THCL 117 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~-~g~~~G~i~~~-g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~------~~~~ 117 (531)
..+.+.+||+|||||||+|+|+|... . ..|+|..+ |.... ...++.+++++|+..+++..++++. ....
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~--~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~l~~l~~~e~ 291 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEI--LTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQI 291 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCC--CCC--------------CCCEEEECTTSCEEEECHHHHTCCCCCCCHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHhcccccc--ccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhhhcCCCHHHH
Confidence 35889999999999999999999654 2 34677665 54332 2345678999999888888888775 2333
Q ss_pred HHHHHHHHHhcCCchhhhccH----HHHHHHHHHHHH
Q 042733 118 YMFIEEGMELVELNPFRQALF----EQRKRLTVAVEF 150 (531)
Q Consensus 118 ~~~~~~~l~~l~l~~~~~~~~----GerqRv~iA~aL 150 (531)
...+.+.++.+++.+..+... ||+||++||+++
T Consensus 292 ~~~~~e~l~~~gl~~f~~~~~~~lSG~~~r~ala~gl 328 (358)
T 2rcn_A 292 TQGFVEFHDYLGHCKYRDCKHDADPGCAIREAVENGA 328 (358)
T ss_dssp HHTSGGGGGGTTCSSSTTCCSSSCTTCHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCchhcCCCcccCCHHHHHHHHHhcC
Confidence 455677788888876555433 999999999853
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=3.1e-09 Score=111.64 Aligned_cols=154 Identities=12% Similarity=0.134 Sum_probs=86.5
Q ss_pred EEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCC-------
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQND------- 102 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~------- 102 (531)
.+++++..+.. ..-+.+|++||||||||++|+|..+ .+.+.+.. .....+|++.+++
T Consensus 147 ~~~i~lelk~g------~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~~~~~l~ 210 (416)
T 1udx_A 147 KRRLRLELMLI------ADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEEERFTLA 210 (416)
T ss_dssp EEEEEEEECCS------CSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSSCEEEEE
T ss_pred EeeeeeEEcCC------CEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCcceEEEE
Confidence 45666665421 3356788889999999999999743 12222211 1122334444332
Q ss_pred ---CCCCCCcHHhH----HH--HHHHHHHHHHHhcCCc--hhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 042733 103 ---IHSPHDTLYDF----TH--CLYMFIEEGMELVELN--PFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAA 171 (531)
Q Consensus 103 ---~~~~~ltv~e~----~~--~~~~~~~~~l~~l~l~--~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~ 171 (531)
.+... ..+. .. ...++++.++..+++. ...+...|++||+.+|++|+.+|.++++ +++|+..+
T Consensus 211 DtpGli~~--a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~ 284 (416)
T 1udx_A 211 DIPGIIEG--ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE 284 (416)
T ss_dssp ECCCCCCC--GGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred eccccccc--hhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence 22111 0000 00 0011122334444553 2223334899999999999999999999 99999877
Q ss_pred HHHHHHHHHHH-HcCCeEEEEecCCchHHHhccCeE
Q 042733 172 TTVIRMVRNTV-DMGRTVVCTIHQPSIDIFYSFDEL 206 (531)
Q Consensus 172 ~~i~~~L~~l~-~~g~tvi~~~H~~~~~i~~~~d~v 206 (531)
..++.+++.. +.|.+++.+|..-...+.++++.+
T Consensus 285 -~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 285 -EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp -HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 4455554443 457777766543333455555544
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-09 Score=115.60 Aligned_cols=139 Identities=14% Similarity=0.098 Sum_probs=86.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hh--hcceEEEEecCCCCCCCCcHHhHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ET--FARILGYCEQNDIHSPHDTLYDFTHCL 117 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~--~~~~igyv~Q~~~~~~~ltv~e~~~~~ 117 (531)
.+.+.+|+||||||||+++|+|.... ..|+|.++|.+... .. .++.++|++|+....+..+++++....
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 57889999999999999999996431 13678887654321 11 245689999998877778887753221
Q ss_pred HH-HHHH-HHHhcCCchhhhccH-HHHHHHHHHHHHh-hCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEE
Q 042733 118 YM-FIEE-GMELVELNPFRQALF-EQRKRLTVAVEFV-ANPS-IISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCT 191 (531)
Q Consensus 118 ~~-~~~~-~l~~l~l~~~~~~~~-GerqRv~iA~aL~-~~p~-lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~ 191 (531)
.. ..+. +++..|..+...... ..+|++.+++++. ..|+ ++|...+++|.|.. +.++.+.+ -|.|.++.
T Consensus 372 ~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~f~~~~~itgvIl 445 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKLFHEAVGLTGITL 445 (503)
T ss_dssp HHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHHHHHHTCCSEEEE
T ss_pred HhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHHHHhhcCCCEEEE
Confidence 11 0000 112233322222222 3467888888664 4564 55555588886554 33455554 48899999
Q ss_pred ec
Q 042733 192 IH 193 (531)
Q Consensus 192 ~H 193 (531)
||
T Consensus 446 TK 447 (503)
T 2yhs_A 446 TK 447 (503)
T ss_dssp EC
T ss_pred Ec
Confidence 99
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-07 Score=99.31 Aligned_cols=143 Identities=18% Similarity=0.171 Sum_probs=80.0
Q ss_pred ccEEEEEcCCCchHHHHHHHH--hCCCCC---ceEEEEEEEcCccc-chhh---hcceEEEEecCCCCCCCCcHHhHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVL--AGRKPG---GYITRNITVSGYPE-KQET---FARILGYCEQNDIHSPHDTLYDFTHC 116 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L--~G~~~~---g~~~G~i~~~g~~~-~~~~---~~~~igyv~Q~~~~~~~ltv~e~~~~ 116 (531)
..+...+||+|||||||++.| .+..+. |...+.+.+++... .... +.+.+|+.+|
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~---------------- 241 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD---------------- 241 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----------------
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH----------------
Confidence 468899999999999999954 454431 11124556665432 1111 1122232222
Q ss_pred HHHHHHHHHHhcCCchhhhccHHHHHHHHHHHHHh--hCCCeEEEeCCCCCCCHHHH------------HHHHHHHHHHH
Q 042733 117 LYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFV--ANPSIISRDEPISGLDARAA------------TTVIRMVRNTV 182 (531)
Q Consensus 117 ~~~~~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~--~~p~lllLDEPtsgLD~~~~------------~~i~~~L~~l~ 182 (531)
.+++.+-+.... ....+.+.+.-+..++ .+|+++++|||++.+|+... .++++.|++++
T Consensus 242 ------~vleni~~~~~~-~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~la 314 (400)
T 3lda_A 242 ------DALNNVAYARAY-NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLA 314 (400)
T ss_dssp ------HHHHTEEEEECC-SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred ------hHhhcEEEeccC-ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHH
Confidence 111111110000 0001223333333332 47999999999999997533 56788888888
Q ss_pred Hc-CCeEEEEecCCc------------------hHHHhccCeEEEEcc
Q 042733 183 DM-GRTVVCTIHQPS------------------IDIFYSFDELFLLKQ 211 (531)
Q Consensus 183 ~~-g~tvi~~~H~~~------------------~~i~~~~d~v~lL~~ 211 (531)
++ |.|||+++|... ..+.+.+|.++.|.+
T Consensus 315 ke~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~ 362 (400)
T 3lda_A 315 DQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKK 362 (400)
T ss_dssp HHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEE
T ss_pred HHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEe
Confidence 65 999999999821 123456798888875
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.57 E-value=3e-10 Score=105.03 Aligned_cols=135 Identities=10% Similarity=0.049 Sum_probs=74.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC-CceEEEEEEEcCcccc------hhhhc-ceEE----EEecCCCCCCCCcHHhHHH
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKP-GGYITRNITVSGYPEK------QETFA-RILG----YCEQNDIHSPHDTLYDFTH 115 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~-~g~~~G~i~~~g~~~~------~~~~~-~~ig----yv~Q~~~~~~~ltv~e~~~ 115 (531)
+.+.+|++|||||||++.|+|..+ .|...|.|.++|.+.. ...++ +.+| +++|+..++- .+...
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~~~~ 79 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RRVSE 79 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EECCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ecCCh
Confidence 457789999999999999999643 2223588999887621 12344 3456 7888765441 11000
Q ss_pred HHHHHHHHHHHh-c-CCchhh--hccHHHHHHHHHHHHHhhCCCeE-------EEeCCCCC---CCHHHHHHHHHHHHHH
Q 042733 116 CLYMFIEEGMEL-V-ELNPFR--QALFEQRKRLTVAVEFVANPSII-------SRDEPISG---LDARAATTVIRMVRNT 181 (531)
Q Consensus 116 ~~~~~~~~~l~~-l-~l~~~~--~~~~GerqRv~iA~aL~~~p~ll-------lLDEPtsg---LD~~~~~~i~~~L~~l 181 (531)
+....+++.++. + +++... ..+.|||||++|||+++.+|++. .=|.|..+ +|......+.+.+.+.
T Consensus 80 ~~~a~l~~~i~~~l~g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~ 159 (171)
T 2f1r_A 80 EEGNDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSL 159 (171)
T ss_dssp HHHTCHHHHHHHHTTTCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHH
T ss_pred hhhhCHHHHHHhhCCCCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHH
Confidence 101123344443 3 222111 12339999999999999999873 22444322 3344556777777665
Q ss_pred HHcCC
Q 042733 182 VDMGR 186 (531)
Q Consensus 182 ~~~g~ 186 (531)
..+|.
T Consensus 160 ~~~~~ 164 (171)
T 2f1r_A 160 LREGG 164 (171)
T ss_dssp HTC--
T ss_pred HhccC
Confidence 55543
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.45 E-value=6.3e-08 Score=93.41 Aligned_cols=60 Identities=13% Similarity=0.133 Sum_probs=44.6
Q ss_pred hCCCeEEEeCCCCCC--CHHHHHHHHHHHHHHH-HcCCeEEEEecCCchH-------HHhccCeEEEEcc
Q 042733 152 ANPSIISRDEPISGL--DARAATTVIRMVRNTV-DMGRTVVCTIHQPSID-------IFYSFDELFLLKQ 211 (531)
Q Consensus 152 ~~p~lllLDEPtsgL--D~~~~~~i~~~L~~l~-~~g~tvi~~~H~~~~~-------i~~~~d~v~lL~~ 211 (531)
.+|+++++|+|++.+ |+....+.+..|.+++ +.|.|||+++|..... +.+.+|.++.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655566666666655 4699999999986531 3567899999964
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.43 E-value=2e-10 Score=119.74 Aligned_cols=163 Identities=12% Similarity=0.009 Sum_probs=102.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCC----------CceEEEEEEEcCcccch--h--hhcceE---EEEecCCCCCCCCc
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKP----------GGYITRNITVSGYPEKQ--E--TFARIL---GYCEQNDIHSPHDT 109 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~----------~g~~~G~i~~~g~~~~~--~--~~~~~i---gyv~Q~~~~~~~lt 109 (531)
..-+.+|++|||||||+|+|+|... -.+..|.+.++|..... . ..++.+ .++.+.+.+.+..+
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s 100 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGAS 100 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCc
Confidence 3568999999999999999999311 01346888888743211 0 112222 36677777666666
Q ss_pred HHhHH-HHHHHH---HHHHHHhcCCchhhhccHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHH-H
Q 042733 110 LYDFT-HCLYMF---IEEGMELVELNPFRQALFEQRKRLTVAVEFVANP--SIISRDEPISGLDARAATTVIRMVRNT-V 182 (531)
Q Consensus 110 v~e~~-~~~~~~---~~~~l~~l~l~~~~~~~~GerqRv~iA~aL~~~p--~lllLDEPtsgLD~~~~~~i~~~L~~l-~ 182 (531)
..|.. ...... ++.++..++... +..+-. .+-..+| +++++|||+.++|+...++.++.++.. +
T Consensus 101 ~~e~L~~~fl~~ir~~d~il~Vvd~~~--d~~i~~-------v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~ 171 (392)
T 1ni3_A 101 TGVGLGNAFLSHVRAVDAIYQVVRAFD--DAEIIH-------VEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITS 171 (392)
T ss_dssp SSSSSCHHHHHHHTTCSEEEEEEECCC--TTCSSC-------CSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc--cceeee-------eccccCcchhhhhchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 54421 011011 111111111111 000000 0001289 999999999999999999999999988 6
Q ss_pred HcCCeEEEEecCCchHHHhccCeEE-EEccCc-eeeecCCCC
Q 042733 183 DMGRTVVCTIHQPSIDIFYSFDELF-LLKQVG-QEISVGPLG 222 (531)
Q Consensus 183 ~~g~tvi~~~H~~~~~i~~~~d~v~-lL~~~G-~~v~~G~~~ 222 (531)
+.|.|++ +|+.. ++.+.||++. +|.+ | ++++.|+..
T Consensus 172 ~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~ 209 (392)
T 1ni3_A 172 RGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWS 209 (392)
T ss_dssp CSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCC
T ss_pred hcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCC
Confidence 6677864 89865 5778899998 8885 9 899888765
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.42 E-value=6.5e-07 Score=91.96 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=50.9
Q ss_pred HHHHHHHHhhC--CCeEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HHcCCeEEEEecCCch------
Q 042733 143 RLTVAVEFVAN--PSIISRDEPISGL----------DA---RAATTVIRMVRNT----VDMGRTVVCTIHQPSI------ 197 (531)
Q Consensus 143 Rv~iA~aL~~~--p~lllLDEPtsgL----------D~---~~~~~i~~~L~~l----~~~g~tvi~~~H~~~~------ 197 (531)
-+.++++++.+ |+++++|||++.+ |+ ..++.+.+.++++ ++.|.|||+++|....
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~ 206 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG 206 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 34567777654 9999999999998 33 2333445555554 3459999999996431
Q ss_pred ---------HHHhccCeEEEEccCceeeecCC
Q 042733 198 ---------DIFYSFDELFLLKQVGQEISVGP 220 (531)
Q Consensus 198 ---------~i~~~~d~v~lL~~~G~~v~~G~ 220 (531)
.+...+|.++.+.+ ++++..|+
T Consensus 207 ~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g~ 237 (349)
T 2zr9_A 207 SPETTTGGKALKFYASVRLDVRR-IETLKDGT 237 (349)
T ss_dssp ---CCSSHHHHHHHCSEEEEEEE-EEEECSSS
T ss_pred CCcccCCchHhhhccceEEEEEE-eeeeecCc
Confidence 14467898888875 66665554
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.39 E-value=3.7e-08 Score=98.68 Aligned_cols=106 Identities=13% Similarity=0.067 Sum_probs=66.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHH----------
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHC---------- 116 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~---------- 116 (531)
.+-+..|+.|||||||.+.|.+..... |. . ++.+.+|+|++.+++. +.+++...
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~~---------g~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~ 95 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLMEK---------YG-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQG 95 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHH---------HG-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc---------CC-----C-CceEEEeccccccCCh-HHHHHHhccccccchhhh
Confidence 356888999999999999999965320 10 1 3345566888776653 33332110
Q ss_pred -------HHHHHHHHHHhcCCc-----------hh--hhccHHHHHHHHHH--HHHhhCCCeEEEeCCCCCCCHHH
Q 042733 117 -------LYMFIEEGMELVELN-----------PF--RQALFEQRKRLTVA--VEFVANPSIISRDEPISGLDARA 170 (531)
Q Consensus 117 -------~~~~~~~~l~~l~l~-----------~~--~~~~~GerqRv~iA--~aL~~~p~lllLDEPtsgLD~~~ 170 (531)
......+.++.+... +. ...+.||+||+++| +++ +|+|+|+|||++++|+..
T Consensus 96 ~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 96 RGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 012233444444222 01 12223899999987 555 999999999999999853
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=5.1e-08 Score=90.95 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 042733 142 KRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRN 180 (531)
Q Consensus 142 qRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~ 180 (531)
+++.+|++++.+|+++++| ||++|.....++++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999999998865
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=9.4e-10 Score=103.96 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=40.9
Q ss_pred HHH-HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 146 VAV-EFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 146 iA~-aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
.++ +++.+|++++|||+|+++|..+...+.+.|....+. +...|.+ ..+|++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 677788888888999999999999999988877653 2234521 4589887664
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.5e-09 Score=101.66 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=71.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCC-ceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPG-GYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~-g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l 125 (531)
.+.+.+||+|||||||+|+|+|..++ |...|.+..+|.......... .+....... + .+.+. ......+...-
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~-~~~~~~~~~--~--~~~~~-~~~~~~l~~l~ 96 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEP-RGLLPRKGA--P--ETFDF-EGFQRLCHALK 96 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGG-GTCGGGTTS--G--GGBCH-HHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHH-hcccccCCC--C--chhhH-HHHHHHHHHHh
Confidence 46789999999999999999996431 233577777776543221111 111111000 0 00000 00111111111
Q ss_pred Hh--cC---CchhhhccHHHHHHHHHH-HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHH
Q 042733 126 EL--VE---LNPFRQALFEQRKRLTVA-VEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDI 199 (531)
Q Consensus 126 ~~--l~---l~~~~~~~~GerqRv~iA-~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i 199 (531)
.. +. .+.-.+...||+||+++| ++++.++.++++|||.- ..+.+.--.++++.+..+..+
T Consensus 97 ~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------------~~l~~~~d~~i~vd~~~~~~~ 162 (208)
T 3c8u_A 97 HQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------------RDLTAIWDVSIRLEVPMADLE 162 (208)
T ss_dssp HCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------GGGGGTCSEEEEECCCHHHHH
T ss_pred cCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------HHHHHhcCEEEEEeCCHHHHH
Confidence 11 10 011123344899999987 77778887777888731 111222235677777655434
Q ss_pred HhccCe
Q 042733 200 FYSFDE 205 (531)
Q Consensus 200 ~~~~d~ 205 (531)
.+.+.|
T Consensus 163 ~R~~~R 168 (208)
T 3c8u_A 163 ARLVQR 168 (208)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.7e-08 Score=101.90 Aligned_cols=41 Identities=15% Similarity=0.383 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 042733 139 EQRKRLTVAVEFVA------NPSIISRDEPISGLDARAATTVIRMVRNTVD 183 (531)
Q Consensus 139 GerqRv~iA~aL~~------~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~ 183 (531)
|++|++..|++++. +|++++ +|++|.....++++.|.++.+
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 68999999998887 688876 999999999999999988654
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.25 E-value=2.7e-09 Score=115.15 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=34.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQN 101 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~ 101 (531)
.-+.+||+||||||||++|+|..++. .|.+.+.|...-.......+++..|.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~--~giitied~~E~~~~~~~~v~~~~r~ 313 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPD--AKVVSIEDTREIKLYHENWIAEVTRT 313 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCCCSSEEEEECBC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEcCcccccCCCCCeEEEEeec
Confidence 45888999999999999999976542 46788887542111112345555543
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.5e-06 Score=87.24 Aligned_cols=107 Identities=17% Similarity=0.025 Sum_probs=68.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
.+-+.+|+||+||||+++.|+|.... ..|++.+.+.+...... +.+ .....+
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~~------------------~~q--------l~~~~~ 150 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPAA------------------REQ--------LRLLGE 150 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHHH------------------HHH--------HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHhH------------------HHH--------HHHhcc
Confidence 35667799999999999999995321 01455665544321100 000 001122
Q ss_pred hcCCchh---hhccHHHHHHHHHHHHHhhCCCeEEEeCC-CCCCCHHHHHHHHHHHHHH
Q 042733 127 LVELNPF---RQALFEQRKRLTVAVEFVANPSIISRDEP-ISGLDARAATTVIRMVRNT 181 (531)
Q Consensus 127 ~l~l~~~---~~~~~GerqRv~iA~aL~~~p~lllLDEP-tsgLD~~~~~~i~~~L~~l 181 (531)
..++... .+....+.+|.+++.+...+++++++||| ++|+|.....++.+..+.+
T Consensus 151 ~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 151 KVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 3344322 12233566788999988899999999999 9999998888887776655
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-07 Score=86.29 Aligned_cols=61 Identities=18% Similarity=-0.070 Sum_probs=44.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDF 113 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~ 113 (531)
++.+.+||||||||||+|+|+|..+ .+|+|.++|.+.......+ .+++|+..++ .+|+.|+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l~---~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e~ 94 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGIG---HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPEE 94 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT---CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC---CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHHH
Confidence 3667888889999999999999663 3578888887753211111 2789988777 8898764
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-06 Score=88.13 Aligned_cols=135 Identities=13% Similarity=0.069 Sum_probs=76.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCC--CceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKP--GGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEG 124 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~--~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~ 124 (531)
.+-+.+|+||+||||+++.|++... .| +.+.++.++.. ..+..+. ....
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-------------------~~V~lv~~D~~---r~~a~eq-------L~~~ 156 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKH-------------------KKIAFITTDTY---RIAAVEQ-------LKTY 156 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTC-------------------CCEEEEECCCS---STTHHHH-------HHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcC-------------------CEEEEEecCcc---cchHHHH-------HHHH
Confidence 4778899999999999999999542 22 23556665542 1222221 1112
Q ss_pred HHhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH---HcCCeEEE-EecCCchHHH
Q 042733 125 MELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV---DMGRTVVC-TIHQPSIDIF 200 (531)
Q Consensus 125 l~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~---~~g~tvi~-~~H~~~~~i~ 200 (531)
.+..++....... +..-+.+++ .+.+|+++|+| |+|+|+.....+.++.+-+. ..+.++++ ++|... ++.
T Consensus 157 ~~~~gl~~~~~~~-~~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~ 230 (296)
T 2px0_A 157 AELLQAPLEVCYT-KEEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMK 230 (296)
T ss_dssp HTTTTCCCCBCSS-HHHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHH
T ss_pred HHhcCCCeEecCC-HHHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHH
Confidence 2333432211111 223345555 45999999999 99999877655555443332 12334444 377643 466
Q ss_pred hccCeEEEEccCceeee
Q 042733 201 YSFDELFLLKQVGQEIS 217 (531)
Q Consensus 201 ~~~d~v~lL~~~G~~v~ 217 (531)
+.++++..+.. +.++.
T Consensus 231 ~~~~~~~~l~~-~giVl 246 (296)
T 2px0_A 231 HIVKRFSSVPV-NQYIF 246 (296)
T ss_dssp HHTTTTSSSCC-CEEEE
T ss_pred HHHHHHhcCCC-CEEEE
Confidence 66665544554 45554
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-06 Score=88.45 Aligned_cols=105 Identities=13% Similarity=0.053 Sum_probs=65.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGME 126 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~ 126 (531)
.+-+.+|++||||||+++.|++..... .|++.+.+.+.... + . .+......+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r~------~-------------a-------~eqL~~~~~ 156 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRA------A-------------A-------IEQLKIWGE 156 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCH------H-------------H-------HHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccccH------H-------------H-------HHHHHHHHH
Confidence 467889999999999999999953210 13444444322100 0 0 011223344
Q ss_pred hcCCchhhhccHHHHHHH---HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 042733 127 LVELNPFRQALFEQRKRL---TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV 182 (531)
Q Consensus 127 ~l~l~~~~~~~~GerqRv---~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~ 182 (531)
..++........|+.+++ ++++++..+|+++++|||.. ......+++.|+++.
T Consensus 157 ~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 157 RVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp HHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred HcCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 555544333334788898 89999999999999999974 344555666665554
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-06 Score=92.81 Aligned_cols=155 Identities=13% Similarity=0.067 Sum_probs=89.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCC--CceEEEEEEEcCcccchhhhc-c----eEEEEecCCCCCCCCcHHhHHHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKP--GGYITRNITVSGYPEKQETFA-R----ILGYCEQNDIHSPHDTLYDFTHCLY 118 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~--~g~~~G~i~~~g~~~~~~~~~-~----~igyv~Q~~~~~~~ltv~e~~~~~~ 118 (531)
.++....|++|+|||||+..+++... .| ..+.+.+.......+. + ..++..+. .....++..+ .
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g---~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~-l~~g~l~~~~-----~ 273 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTN---ENVAIFSLEMSAQQLVMRMLCAEGNINAQN-LRTGKLTPED-----W 273 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSS---CCEEEEESSSCHHHHHHHHHHHHHTCCHHH-HHTSCCCHHH-----H
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCC---CcEEEEECCCCHHHHHHHHHHHHcCCCHHH-HhcCCCCHHH-----H
Confidence 46778888889999999999988421 12 1344444333222211 1 11222211 0011222222 1
Q ss_pred HHHHHHHHhcCCchh-----hhccHHHHHHHHHHHHHh--hCCCeEEEeCCCCCCCH--------HHHHHHHHHHHHHHH
Q 042733 119 MFIEEGMELVELNPF-----RQALFEQRKRLTVAVEFV--ANPSIISRDEPISGLDA--------RAATTVIRMVRNTVD 183 (531)
Q Consensus 119 ~~~~~~l~~l~l~~~-----~~~~~GerqRv~iA~aL~--~~p~lllLDEPtsgLD~--------~~~~~i~~~L~~l~~ 183 (531)
.++.+.++.++..+. .....+|.+ +.++.++ .+|+++++|+++...++ ....++.+.|+.+++
T Consensus 274 ~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAk 351 (454)
T 2r6a_A 274 GKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALAR 351 (454)
T ss_dssp HHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 223333433322211 122345554 6677776 68999999999987742 344677788888886
Q ss_pred c-CCeEEEEec---------C--Cch-------HHHhccCeEEEEcc
Q 042733 184 M-GRTVVCTIH---------Q--PSI-------DIFYSFDELFLLKQ 211 (531)
Q Consensus 184 ~-g~tvi~~~H---------~--~~~-------~i~~~~d~v~lL~~ 211 (531)
+ |.+||+++| + |.. .+...+|.|++|.+
T Consensus 352 e~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 352 ELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp HHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred HhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 5 999999999 2 321 35667999999986
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.7e-06 Score=80.86 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=32.8
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 042733 143 RLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV 182 (531)
Q Consensus 143 Rv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~ 182 (531)
....|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 345689999999999999 99999999999998887643
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.12 E-value=4.7e-07 Score=91.06 Aligned_cols=90 Identities=12% Similarity=0.028 Sum_probs=53.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEE---cCcccchh--hh-cceEEEEecCCC----------------
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITV---SGYPEKQE--TF-ARILGYCEQNDI---------------- 103 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~---~g~~~~~~--~~-~~~igyv~Q~~~---------------- 103 (531)
+.+...+||+|||||||+|+|+|...+ ..|++.+ +|.+.... .. .+.+||++|.+.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~--~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~ 246 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKL--RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKH 246 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCC--C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGG
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccc--cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHH
Confidence 568899999999999999999997653 3578887 67654321 11 135799999874
Q ss_pred CCCCCcHHhHH--------HHHHHHHHHHHHhcCCc-hhhhccH
Q 042733 104 HSPHDTLYDFT--------HCLYMFIEEGMELVELN-PFRQALF 138 (531)
Q Consensus 104 ~~~~ltv~e~~--------~~~~~~~~~~l~~l~l~-~~~~~~~ 138 (531)
++|++|+ ++- .+...++.++++.++|. +..+...
T Consensus 247 l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 247 YFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp GSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 4677777 541 11234577788888884 4444433
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.7e-07 Score=91.95 Aligned_cols=100 Identities=10% Similarity=0.044 Sum_probs=63.1
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEE---cCcccchh--hhc-ceEEEEecCCCCC-----CCCcHHhH-
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITV---SGYPEKQE--TFA-RILGYCEQNDIHS-----PHDTLYDF- 113 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~---~g~~~~~~--~~~-~~igyv~Q~~~~~-----~~ltv~e~- 113 (531)
+.+.+.+||+|||||||+|+|+ .... .+|+|.+ +|.+.... ..+ +.+||++|++.+. +.+|+.+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~--~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~e~l~ 241 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEEL--RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPREVR 241 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCC--CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCGGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhC--cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCHHHHH
Confidence 4689999999999999999999 7543 3577777 67654321 112 2579999988553 66777332
Q ss_pred ---HH---H------------HHHHHHHHHHhcCCch-hhhccH----H-HHHHHHHHH
Q 042733 114 ---TH---C------------LYMFIEEGMELVELNP-FRQALF----E-QRKRLTVAV 148 (531)
Q Consensus 114 ---~~---~------------~~~~~~~~l~~l~l~~-~~~~~~----G-erqRv~iA~ 148 (531)
.. . ....++++++.++|.+ ..+... | ++|++.|||
T Consensus 242 ~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 242 NYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 10 0 0135788899999976 555544 3 467777776
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-07 Score=100.08 Aligned_cols=108 Identities=14% Similarity=0.029 Sum_probs=67.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-------hhhcceEEEEe---------cCCCC--CCC-
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-------ETFARILGYCE---------QNDIH--SPH- 107 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-------~~~~~~igyv~---------Q~~~~--~~~- 107 (531)
++.+.+||+||||||||++|+|..++. .|+|.+.+.+... ...++.+++.+ |++.. ...
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~--~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSS--ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 578899999999999999999954321 3566666655421 11223344544 76654 233
Q ss_pred ---CcHHhHHHHH--------------HHHHHHHHHhcCCchhh---hccHHHHHHHHHHHHHhhCCCeEE
Q 042733 108 ---DTLYDFTHCL--------------YMFIEEGMELVELNPFR---QALFEQRKRLTVAVEFVANPSIIS 158 (531)
Q Consensus 108 ---ltv~e~~~~~--------------~~~~~~~l~~l~l~~~~---~~~~GerqRv~iA~aL~~~p~lll 158 (531)
.|+.++.... .....+.+..+++.+.. ..+.||+|| ||++|+.+|++..
T Consensus 246 Rd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 246 RDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred CCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 4666642111 01223346677776643 112289999 9999999999875
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.7e-05 Score=84.65 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HcCCeEEEEecCCc
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEP----------ISGLDARAATTVIRMVRNTV----DMGRTVVCTIHQPS 196 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEP----------tsgLD~~~~~~i~~~L~~l~----~~g~tvi~~~H~~~ 196 (531)
++++|..++++....|.+|++||+ +.|.|......+.++|..+- +.+..||.+||+|+
T Consensus 94 ~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 94 AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred HHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 456778888898899999999999 44777777667777776663 24678999999874
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=3.2e-06 Score=90.77 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=36.4
Q ss_pred HHHHHhhCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHHc----CCeEEEEecCCch
Q 042733 146 VAVEFVANPS-IISRDEPISGLDARAATTVIRMVRNTVDM----GRTVVCTIHQPSI 197 (531)
Q Consensus 146 iA~aL~~~p~-lllLDEPtsgLD~~~~~~i~~~L~~l~~~----g~tvi~~~H~~~~ 197 (531)
+|+++...|. ++++||++.-+|.. ...+.+.+.++++. |.++|++||+|+.
T Consensus 289 ~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 289 QHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp -CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred cccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 4455667888 78999999988843 34555666655432 7799999999973
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.88 E-value=2.3e-06 Score=86.18 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=35.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEE---cCcccch-hhhcce-EEEEecCCCCCC----CCcH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITV---SGYPEKQ-ETFARI-LGYCEQNDIHSP----HDTL 110 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~---~g~~~~~-~~~~~~-igyv~Q~~~~~~----~ltv 110 (531)
.+.+.+||+|+|||||+|+|+|.... ..|++.+ .|..... ....+. .||++|.+.+.+ .+|+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~--~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGL--RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred CEEEEECCCCCCHHHHHHHhcccccc--cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 58899999999999999999997542 3577776 5654321 112222 799999987654 5777
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=4.9e-07 Score=91.24 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=66.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEE---cCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITV---SGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEE 123 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~---~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~ 123 (531)
.+-+.+||+|||||||+++|+|.......+|++.+ +|...... .++.+|++ |+..+++.+++.++.... ..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~----~~ 154 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFV----SD 154 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHH----HH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHH----HH
Confidence 47788999999999999999995320001366777 77654322 23456888 777777788887754321 11
Q ss_pred HHHhcC-Cc-hhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 042733 124 GMELVE-LN-PFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDA 168 (531)
Q Consensus 124 ~l~~l~-l~-~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~ 168 (531)
....-. +. +..+. ...+|+..+.+.+.+|+++++|.|....|.
T Consensus 155 l~~~~~~i~~P~~~~--~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 155 LKSGVPNVTAPVYSH--LIYDVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp HTTTCSCEEECCEET--TTTEECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred HhCCCCceecccccc--cccCcccccceecCCCCEEEECchhhCCCc
Confidence 111000 00 11111 112333322344567899999999998874
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.1e-07 Score=94.44 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=59.3
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEEEEecCC-CCCCCCcHHhHHHHH-HHHHHH
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGYCEQND-IHSPHDTLYDFTHCL-YMFIEE 123 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~igyv~Q~~-~~~~~ltv~e~~~~~-~~~~~~ 123 (531)
-+..||+|||||||+|+|+|.... +.+.++|.+... ....+.+++++|.. ...|.+++.+..... ..+-..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~ 122 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR 122 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC
Confidence 577899999999999999997653 467888765421 11223344555542 222333322220000 000000
Q ss_pred HHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCC
Q 042733 124 GMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPIS 164 (531)
Q Consensus 124 ~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPts 164 (531)
..+ ......+... ||+||+.+++++..+|++| ||++.
T Consensus 123 ~~~--~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 123 ETG--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp ------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred cch--HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 000 0112222222 7899999999999999986 88753
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=5.5e-07 Score=91.83 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=68.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCC--ceEEEEEEEcCcccch--hh-hcceEEEEecCCCCCCCCcHHhHHHHH----
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPG--GYITRNITVSGYPEKQ--ET-FARILGYCEQNDIHSPHDTLYDFTHCL---- 117 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~--g~~~G~i~~~g~~~~~--~~-~~~~igyv~Q~~~~~~~ltv~e~~~~~---- 117 (531)
+.-+..||+|+|||||+|+|+|.... ...+|.+..++.+... .. .++.+.+++|.+.+.+ ++.|.....
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~ 129 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDF 129 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhc
Confidence 44678999999999999999995421 1233433333322211 11 2456899999877654 555431100
Q ss_pred -----------HHHHHHHHHhcCCch----hhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 042733 118 -----------YMFIEEGMELVELNP----FRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTV 182 (531)
Q Consensus 118 -----------~~~~~~~l~~l~l~~----~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~ 182 (531)
...++..++.+++.. ......|+|||+.++ .+||+.+..++.+.|++.+
T Consensus 130 ~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 130 QIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp CCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred ccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHH
Confidence 011111222233321 111223899998654 7899999999999999887
Q ss_pred Hc
Q 042733 183 DM 184 (531)
Q Consensus 183 ~~ 184 (531)
+.
T Consensus 194 ~~ 195 (334)
T 1in4_A 194 SL 195 (334)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.72 E-value=4.5e-05 Score=86.29 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEE-ecCCchHHHhccCe
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPIS-GLDARAATTVIRMVRNTVDMGRTVVCT-IHQPSIDIFYSFDE 205 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~-~H~~~~~i~~~~d~ 205 (531)
|+.+|..++..++.+++++++|||.. +||......+++.+.......++|+++ ||++. .+.+.+++
T Consensus 194 G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~ 261 (773)
T 2xau_A 194 GMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFND 261 (773)
T ss_dssp HHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTS
T ss_pred HHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcC
Confidence 89999999999999999999999996 999887777766666554445677775 89765 56666664
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00023 Score=72.94 Aligned_cols=132 Identities=18% Similarity=0.179 Sum_probs=73.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC--CCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHH
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK--PGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEG 124 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~--~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~ 124 (531)
.+....||+|+|||||+..+++.. .++. -+.+++.......+.+.+|+.+|+.......++.+
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~---VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~------------ 126 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGV---AAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ------------ 126 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCC---EEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHH------------
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCe---EEEEecccccchHHHHHcCCchhhhhhhhccCHHH------------
Confidence 578889999999999999999842 2221 13444443222223334455554433222223322
Q ss_pred HHhcCCchhhhccHHHHHHHHHHHHHh--hCCCeEEEeCCCCCCC-H---------------HHHHHHHHHHHHHHHc-C
Q 042733 125 MELVELNPFRQALFEQRKRLTVAVEFV--ANPSIISRDEPISGLD-A---------------RAATTVIRMVRNTVDM-G 185 (531)
Q Consensus 125 l~~l~l~~~~~~~~GerqRv~iA~aL~--~~p~lllLDEPtsgLD-~---------------~~~~~i~~~L~~l~~~-g 185 (531)
-+.+++.++ .+|+++++|+-++=.. . ....++++.|+.++++ +
T Consensus 127 ------------------~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~ 188 (356)
T 3hr8_A 127 ------------------ALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSK 188 (356)
T ss_dssp ------------------HHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSS
T ss_pred ------------------HHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 122233333 4689999998665443 1 1122344555666654 8
Q ss_pred CeEEEEecCCc---------------hHHHhccCeEEEEcc
Q 042733 186 RTVVCTIHQPS---------------IDIFYSFDELFLLKQ 211 (531)
Q Consensus 186 ~tvi~~~H~~~---------------~~i~~~~d~v~lL~~ 211 (531)
.+||++.|-.. ..+...+|.++.+..
T Consensus 189 ~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 189 AVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRR 229 (356)
T ss_dssp CEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEE
T ss_pred CEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEe
Confidence 89999888621 113356788888864
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=3.4e-05 Score=81.59 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=50.6
Q ss_pred hCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEE-EccCceeeecCCCCC
Q 042733 152 ANPSIISRDEPISGLDA-RAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFL-LKQVGQEISVGPLGP 223 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~-~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~l-L~~~G~~v~~G~~~~ 223 (531)
.+|++|++||+..-.+. .++..+.+.+..+.+.|+.+|+++|.+..++....+++.- +. .|.++..++++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~~ 265 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPDE 265 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCCH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCCH
Confidence 48999999999877664 6778889999888878899999999865433222233322 33 367777777753
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.53 E-value=2.6e-06 Score=82.12 Aligned_cols=73 Identities=12% Similarity=-0.001 Sum_probs=41.3
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc-----------hhhhcce
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK-----------QETFARI 94 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~-----------~~~~~~~ 94 (531)
..|+++|++..+.. .-.+=..+.+.+|||||||||||++|+|...+ .+|+|.++|.+.. ....++.
T Consensus 8 ~~l~l~~~~~~~~~-~~~~~~~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (227)
T 1qhl_A 8 RSLTLINWNGFFAR-TFDLDELVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAG 84 (227)
T ss_dssp EEEEEEEETTEEEE-EECHHHHHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSS
T ss_pred eEEEEEeeecccCC-EEEEcCcEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcC
Confidence 45777777654432 11111245677899999999999999995332 1245566554431 1123567
Q ss_pred EEEEecC
Q 042733 95 LGYCEQN 101 (531)
Q Consensus 95 igyv~Q~ 101 (531)
++|++|+
T Consensus 85 i~~v~~~ 91 (227)
T 1qhl_A 85 VCYSMLD 91 (227)
T ss_dssp EEEEEEE
T ss_pred cEEEEEe
Confidence 8999984
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.53 E-value=1.5e-07 Score=90.57 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=15.4
Q ss_pred cEEEEEcCCCchHHHHHHHHh-CCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLA-GRKP 71 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~-G~~~ 71 (531)
.+-+.+||+|||||||+|+|+ |..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 467889999999999999999 9754
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00017 Score=73.98 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEe--cCCc
Q 042733 139 EQRKRLTVAVEFVANPSIISRD-EPISGLDARAATTVIRMVRNTVDMGRTVVCTI--HQPS 196 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLD-EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~--H~~~ 196 (531)
+|+|++. +.+...++-++++| +|..|+|......+++.+++... +..+|++. ||..
T Consensus 235 ~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 235 IEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp HHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred HHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 6666665 55555677788999 99999999998888877776543 67777777 7653
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.45 E-value=1e-05 Score=75.69 Aligned_cols=53 Identities=23% Similarity=0.176 Sum_probs=34.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceEEEEecCCCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGYCEQNDIHS 105 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~igyv~Q~~~~~ 105 (531)
.+-+.+||+|||||||+++|+|..+. +.+.+..... ...++.++|++|++..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALAE------IKISISHTTRPKRPGDQEGVDYFFIDETRF 63 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSSS------EEECCCEECSCCCTTCCBTTTBEECCHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCC------eEEeceeccCCCchhHhcCceEEeccHHHH
Confidence 46789999999999999999997542 2333322111 12244578999875443
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00015 Score=79.71 Aligned_cols=129 Identities=15% Similarity=0.091 Sum_probs=74.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCC----------------------C
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIH----------------------S 105 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~----------------------~ 105 (531)
.-+.+||+|+|||||+++|++..+.. ..|.+.+.+.+... ....++++++.... +
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~ 138 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRL 138 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHHHHHHHHTCC-------
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccc
Confidence 45788999999999999999975432 12667777765432 34567888764210 0
Q ss_pred CCCcHHhHH-------------HHHHHHHHHHHHhcCCchh--hhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 042733 106 PHDTLYDFT-------------HCLYMFIEEGMELVELNPF--RQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARA 170 (531)
Q Consensus 106 ~~ltv~e~~-------------~~~~~~~~~~l~~l~l~~~--~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~ 170 (531)
..+++.++. ........+....+..... .....|++|++..++....++.+|+|||... |++..
T Consensus 139 ~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~ 217 (604)
T 3k1j_A 139 KSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKM 217 (604)
T ss_dssp ----CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHH
T ss_pred cccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccCceeeecCCCEEEEechhh-CCHHH
Confidence 000000000 0000000011111111000 1111267888888888889999999999988 89988
Q ss_pred HHHHHHHHHH
Q 042733 171 ATTVIRMVRN 180 (531)
Q Consensus 171 ~~~i~~~L~~ 180 (531)
+..+.+.|.+
T Consensus 218 q~~Ll~~Le~ 227 (604)
T 3k1j_A 218 QQSLLTAMQE 227 (604)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888887764
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=2.9e-05 Score=72.86 Aligned_cols=127 Identities=9% Similarity=0.041 Sum_probs=68.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHHHh
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMEL 127 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l~~ 127 (531)
+-+.+|++||||||+.++|++. | ...+++... .+... + +.. ....++.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l---g----~~~id~d~~----~~~~~----~-----~~~----------~~~~~i~~~ 53 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL---G----VPLVDADVV----AREVV----A-----KDS----------PLLSKIVEH 53 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT---T----CCEEEHHHH----HHHTT----C-----SSC----------HHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC---C----CcccchHHH----HHHHc----c-----CCh----------HHHHHHHHH
Confidence 3577899999999999999983 1 112222111 11100 0 000 112334444
Q ss_pred cCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchH-HHhccCeE
Q 042733 128 VELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSID-IFYSFDEL 206 (531)
Q Consensus 128 l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~-i~~~~d~v 206 (531)
+|..... .-|+.+|..++.....+|+.+.++ .+.++|.....+.+.++.. .+.++|+.+|..... ....||.+
T Consensus 54 ~g~~~~~--~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~v 127 (206)
T 1jjv_A 54 FGAQILT--EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRI 127 (206)
T ss_dssp HCTTCC--------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEE
T ss_pred hCHHHhc--cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEE
Confidence 5543221 126777888888887777654322 3345666666555544332 356788888875422 24568888
Q ss_pred EEEc
Q 042733 207 FLLK 210 (531)
Q Consensus 207 ~lL~ 210 (531)
++++
T Consensus 128 i~l~ 131 (206)
T 1jjv_A 128 LVVD 131 (206)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00049 Score=70.37 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=35.6
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCeEEEEecCCc
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVD---MGRTVVCTIHQPS 196 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~---~g~tvi~~~H~~~ 196 (531)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 46889999999876 88888888888776655 5778999999874
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00025 Score=72.98 Aligned_cols=128 Identities=15% Similarity=0.085 Sum_probs=70.0
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCC---------ceEEEEEEEcCcccchhhhcceEEEEecCCCCC---CCCcHHhH---
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPG---------GYITRNITVSGYPEKQETFARILGYCEQNDIHS---PHDTLYDF--- 113 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~---------g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~---~~ltv~e~--- 113 (531)
-..+|++|||||||+|.|+|.... ....+.+.++|.+.. +....|++.+.+... ...|..+.
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~~lve~f~~tl~~~~~a 258 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPPQIVDAFFVTLSEAKYS 258 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCGGGHHHHHHHHHGGGGS
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCHHHHHHHHHHHHHHHhC
Confidence 468999999999999999995321 123577777764321 111223222211000 00000000
Q ss_pred ------------H---HHHHHHHHHHHHhcCCchh--------hhccH-HHHHHHHHH----HHH-hhCCCeEEEeCCCC
Q 042733 114 ------------T---HCLYMFIEEGMELVELNPF--------RQALF-EQRKRLTVA----VEF-VANPSIISRDEPIS 164 (531)
Q Consensus 114 ------------~---~~~~~~~~~~l~~l~l~~~--------~~~~~-GerqRv~iA----~aL-~~~p~lllLDEPts 164 (531)
. ......+.+.++.+++.+. .|..- ++++|+.++ +++ ..+|++ +|+|
T Consensus 259 D~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~S 334 (364)
T 2qtf_A 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPIS 334 (364)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECB
T ss_pred CEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEE
Confidence 0 1112234556666654332 12211 567888777 554 334454 8999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 042733 165 GLDARAATTVIRMVRNTVD 183 (531)
Q Consensus 165 gLD~~~~~~i~~~L~~l~~ 183 (531)
++|......+.+.|.+...
T Consensus 335 A~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhc
Confidence 9999999999999887654
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=4e-05 Score=81.62 Aligned_cols=48 Identities=17% Similarity=0.095 Sum_probs=36.8
Q ss_pred EEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCccc
Q 042733 30 LNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPE 86 (531)
Q Consensus 30 ~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~ 86 (531)
++|+++.++ . .+.+.+||||||||||||+|+|..++ .+|+|.++|.+.
T Consensus 20 l~~vsl~i~----~---e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 67 (483)
T 3euj_A 20 FFARTFDFD----E---LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTTE 67 (483)
T ss_dssp EEEEEEECC----S---SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTTS
T ss_pred ccceEEEEc----c---ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEc
Confidence 567777764 1 57889999999999999999996432 246788888764
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0019 Score=63.81 Aligned_cols=67 Identities=24% Similarity=0.160 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----cCCeEEEEecCCc---hHHHhc
Q 042733 140 QRKRLTVAVEFVANPSIISRDEPISGLDAR----------AATTVIRMVRNTVD----MGRTVVCTIHQPS---IDIFYS 202 (531)
Q Consensus 140 erqRv~iA~aL~~~p~lllLDEPtsgLD~~----------~~~~i~~~L~~l~~----~g~tvi~~~H~~~---~~i~~~ 202 (531)
++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.+|++|. ..+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R 179 (297)
T 3b9p_A 100 KLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRR 179 (297)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhh
Confidence 445556666777899999999998766532 22233433433221 1345777888753 233344
Q ss_pred cCeE
Q 042733 203 FDEL 206 (531)
Q Consensus 203 ~d~v 206 (531)
|++.
T Consensus 180 ~~~~ 183 (297)
T 3b9p_A 180 FTKR 183 (297)
T ss_dssp CCEE
T ss_pred CCeE
Confidence 5544
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0017 Score=65.96 Aligned_cols=115 Identities=10% Similarity=0.025 Sum_probs=69.7
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l 125 (531)
.++....++.|+|||||+.-++..... . ...+.|+.- .++..+. ..+.....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~---------~---------g~~Vl~fSl------Ems~~ql----~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN---------D---------DRGVAVFSL------EMSAEQL----ALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH---------T---------TCEEEEEES------SSCHHHH----HHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---------c---------CCeEEEEeC------CCCHHHH----HHHHHHHh
Confidence 467888888899999999988763210 0 112333322 1232221 11222222
Q ss_pred HhcCCchhhhc--cHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCeEEEEec
Q 042733 126 ELVELNPFRQA--LFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM--GRTVVCTIH 193 (531)
Q Consensus 126 ~~l~l~~~~~~--~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tvi~~~H 193 (531)
..+++.+..+. ..++++|+..|...+.++++.+.|+|... ..++...+++++++ |..+|++-|
T Consensus 98 ~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 98 TSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred hCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 22333333222 23799999999999999999999998654 33666677777654 567777754
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.004 Score=63.35 Aligned_cols=54 Identities=7% Similarity=0.030 Sum_probs=35.9
Q ss_pred HHHHHHHHHh----hCCCeEEEeCCCCCCCHH------------HHHHHHHHHHHHHHc-CCeEEEEecCC
Q 042733 142 KRLTVAVEFV----ANPSIISRDEPISGLDAR------------AATTVIRMVRNTVDM-GRTVVCTIHQP 195 (531)
Q Consensus 142 qRv~iA~aL~----~~p~lllLDEPtsgLD~~------------~~~~i~~~L~~l~~~-g~tvi~~~H~~ 195 (531)
+.+..++.++ .+++++++|+.++-.+.. ...+++..|+.++++ +.+||++.|-.
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 3444555555 579999999999866432 124555666666654 88999888853
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.86 E-value=5e-05 Score=71.08 Aligned_cols=34 Identities=18% Similarity=0.051 Sum_probs=27.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCccc
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPE 86 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~ 86 (531)
.+-+.+||+|||||||+|+|+|.. |.+.+++.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~ 63 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAF 63 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh------CCeEEccccc
Confidence 467889999999999999999865 3566776543
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.86 E-value=6.4e-06 Score=81.42 Aligned_cols=33 Identities=36% Similarity=0.362 Sum_probs=25.8
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYP 85 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~ 85 (531)
-+.+||+|+|||||+++|++.... |.+.+++.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~----~~i~~~~~~ 108 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARV----PFITASGSD 108 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC----CEEEEEHHH
T ss_pred EEEECCCcChHHHHHHHHHHHcCC----CEEEecHHH
Confidence 477899999999999999997643 456666643
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00029 Score=78.35 Aligned_cols=124 Identities=10% Similarity=0.005 Sum_probs=65.1
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHHH
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~l 125 (531)
-+.+|++|+|||||++.|++....-...|++ .+|.... ....++.+++..|...+... ++.. .++
T Consensus 12 i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~----------nli 79 (665)
T 2dy1_A 12 VALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV----------FLL 79 (665)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE----------EEE
T ss_pred EEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE----------EEE
Confidence 4678999999999999999632210112444 3443321 12223445555543322110 0000 000
Q ss_pred HhcCCchhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCch
Q 042733 126 ELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSI 197 (531)
Q Consensus 126 ~~l~l~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 197 (531)
+.-|..+. ........-..+..++++| |+.|+|+.+.. .++.+.+.+.++|++.|..+.
T Consensus 80 DTpG~~~f--------~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~----~~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 80 DAPGYGDF--------VGEIRGALEAADAALVAVS-AEAGVQVGTER----AWTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp ECCCSGGG--------HHHHHHHHHHCSEEEEEEE-TTTCSCHHHHH----HHHHHHHTTCCEEEEEECGGG
T ss_pred eCCCccch--------HHHHHHHHhhcCcEEEEEc-CCcccchhHHH----HHHHHHHccCCEEEEecCCch
Confidence 00111110 0112222335688899999 99999988773 333333468888899998764
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0034 Score=62.52 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=19.8
Q ss_pred EEEEcCCCchHHHHHHHHhCCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
-+..||.|+|||||+++|++...
T Consensus 52 vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 52 VLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT
T ss_pred EEEECCCCcCHHHHHHHHHHHhC
Confidence 46789999999999999998653
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.007 Score=60.95 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=37.2
Q ss_pred HHHHHHHHHHh---hCCCeEEEeCCCCCCCH--------HH----HHHHHHHHHHHHHc-CCeEEEEecC
Q 042733 141 RKRLTVAVEFV---ANPSIISRDEPISGLDA--------RA----ATTVIRMVRNTVDM-GRTVVCTIHQ 194 (531)
Q Consensus 141 rqRv~iA~aL~---~~p~lllLDEPtsgLD~--------~~----~~~i~~~L~~l~~~-g~tvi~~~H~ 194 (531)
.+.+..++.++ .+|+++++|+.++-.+. .. ..+++..|++++++ +.+||++.|-
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 35666777777 67999999999876532 11 24455566666654 8899988774
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.014 Score=59.71 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G 68 (531)
.+....|++|+|||||...++.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6788889999999999988876
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0097 Score=59.55 Aligned_cols=46 Identities=4% Similarity=0.070 Sum_probs=35.3
Q ss_pred hhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 151 VANPSIISRDEPIS-GLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 151 ~~~p~lllLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
..++++|++||+-. .-|...+..+...+..+.+.|..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35799999999865 33447788888888888777787888877553
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.00019 Score=70.03 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=22.5
Q ss_pred eEEEEEeE-EEEEeCCCccccccEEEEEcC---C---------CchHHHHHHHHhCCC
Q 042733 26 HYISLNEI-VYSVDMPQIGDLNSLSGAFRP---G---------GAGKTTLMDVLAGRK 70 (531)
Q Consensus 26 ~~l~~~~l-s~~~~~~~~~iL~~vs~~i~~---g---------GaGKTTLLk~L~G~~ 70 (531)
..++++|+ +++|. +...+|+++|+.+.+ | ||||||+.++|++..
T Consensus 16 ~~l~~~~~~~~~~~-~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFD-EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEec-CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36899999 99983 244577777665555 4 999999999999854
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.024 Score=56.79 Aligned_cols=114 Identities=12% Similarity=0.015 Sum_probs=68.4
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCC-CCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHhHHHHHHHHHHHH
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRK-PGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEG 124 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~-~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e~~~~~~~~~~~~ 124 (531)
.++....++.|+|||||+..++... ..+ ..+.|+.-+ ++..+. ..+....
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g-------------------~~vl~~slE------~s~~~l----~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND-------------------DVVNLHSLE------MGKKEN----IKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT-------------------CEEEEEESS------SCHHHH----HHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC-------------------CeEEEEECC------CCHHHH----HHHHHHH
Confidence 3577778888999999998887521 111 123444322 222221 1122222
Q ss_pred HHhcCCchhhhcc----HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCe--EEEEec
Q 042733 125 MELVELNPFRQAL----FEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRT--VVCTIH 193 (531)
Q Consensus 125 l~~l~l~~~~~~~----~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~t--vi~~~H 193 (531)
...+++.+..+.. .++++|+..|...+.++++.+.|+|... ..++.+.++++.++ |.. +|++-|
T Consensus 119 ~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 119 AGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 2223333332222 2788999999999999999999998643 34566667776654 666 777766
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0012 Score=67.26 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=19.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
..-+..||+|+|||||++.+++.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34577899999999999999984
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0033 Score=62.74 Aligned_cols=58 Identities=9% Similarity=0.015 Sum_probs=39.0
Q ss_pred HHHHHHh--hCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHHc-CC--eEEEEecCCchHHHhccCeEE
Q 042733 145 TVAVEFV--ANPSIISRDEPISGLDARA-ATTVIRMVRNTVDM-GR--TVVCTIHQPSIDIFYSFDELF 207 (531)
Q Consensus 145 ~iA~aL~--~~p~lllLDEPtsgLD~~~-~~~i~~~L~~l~~~-g~--tvi~~~H~~~~~i~~~~d~v~ 207 (531)
.+++.+. ..|.++++ +.+|... +..+.+.++++++. |. .+.++.|+-. .+..++|.+.
T Consensus 107 ~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 107 MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 5566666 68889988 7899876 66777888888764 53 4555666543 4555555543
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0019 Score=58.87 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCC
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.++++.+||||||||||+++|.+..
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3688999999999999999998843
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.00067 Score=65.97 Aligned_cols=54 Identities=22% Similarity=0.111 Sum_probs=37.8
Q ss_pred cEEEEEcCCCchHHHHHHHHh---CCCCCceEEEEEE--------EcCcccc----hhhhcceEEEEecCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLA---GRKPGGYITRNIT--------VSGYPEK----QETFARILGYCEQND 102 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~---G~~~~g~~~G~i~--------~~g~~~~----~~~~~~~igyv~Q~~ 102 (531)
.+-+.+||+||||||++|+|+ |... ..+|.+. .+|.+.. ...+++.+++++|.+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 467889999999999999999 8643 2346665 5665442 123556688888754
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0026 Score=58.22 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=25.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEc
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVS 82 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~ 82 (531)
.+.+.+||+|||||||+|+|++..+.. ..|.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~-~~~~i~~t 40 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDR-FAYPIPHT 40 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTT-EECCCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCcc-EEEeeecc
Confidence 467889999999999999999965421 33444443
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.013 Score=61.43 Aligned_cols=50 Identities=14% Similarity=0.018 Sum_probs=32.8
Q ss_pred HHHHHHhhCCCeEEEeCCC-CC--CCHHHHHHHHHHHHHHHHcCCeEEEEecC
Q 042733 145 TVAVEFVANPSIISRDEPI-SG--LDARAATTVIRMVRNTVDMGRTVVCTIHQ 194 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPt-sg--LD~~~~~~i~~~L~~l~~~g~tvi~~~H~ 194 (531)
+++.+...+++++++|+|- .+ .|+....++.+.++.+......+++..|.
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 4555555799999999997 45 78877777777665553333444444543
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.026 Score=54.33 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..||+|+|||||+++|++..
T Consensus 48 vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHc
Confidence 4678999999999999999854
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0055 Score=58.52 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=41.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEec---------CCchHHHhccCeEEEEc
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH---------QPSIDIFYSFDELFLLK 210 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H---------~~~~~i~~~~d~v~lL~ 210 (531)
+++++++||--. |+. .+++.++.+++.|.+||++-| .+..++..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 664 355566777777999999999 55667888899999875
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.011 Score=57.66 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=32.0
Q ss_pred HHHHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHH---c-CCeEEEEecCC
Q 042733 147 AVEFVANPSIISRDEPIS----------GLDARAATTVIRMVRNTVD---M-GRTVVCTIHQP 195 (531)
Q Consensus 147 A~aL~~~p~lllLDEPts----------gLD~~~~~~i~~~L~~l~~---~-g~tvi~~~H~~ 195 (531)
..+...+|.+|++||.-. +-|......+.+++..+.. . +..+|.+++.+
T Consensus 104 ~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 104 KLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP 166 (285)
T ss_dssp HHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred HHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence 334456789999999743 2355667777777776632 2 44577777765
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0099 Score=54.97 Aligned_cols=50 Identities=6% Similarity=0.007 Sum_probs=28.4
Q ss_pred hCCCeEEEeCCCC-CCCHHHHHHHH-HHHHHHHHcCCeEEEEecCCchHHHh
Q 042733 152 ANPSIISRDEPIS-GLDARAATTVI-RMVRNTVDMGRTVVCTIHQPSIDIFY 201 (531)
Q Consensus 152 ~~p~lllLDEPts-gLD~~~~~~i~-~~L~~l~~~g~tvi~~~H~~~~~i~~ 201 (531)
.++++|++||+-. .++...+..++ .++......+..+|++|+.+..++..
T Consensus 114 ~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 114 KKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp HHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHH
T ss_pred cCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHH
Confidence 4678999999932 23433344344 35555444566777777765444433
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0049 Score=54.86 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHh
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLA 67 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~ 67 (531)
.++++.+|||||||||++++|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999986
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.044 Score=52.10 Aligned_cols=42 Identities=5% Similarity=0.078 Sum_probs=29.3
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH--cCCeEEEEec
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVD--MGRTVVCTIH 193 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~--~g~tvi~~~H 193 (531)
.+|+++++..+.+.++......+..+++.... ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 47899999999888888666555555544332 1357888888
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0048 Score=61.12 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=23.8
Q ss_pred HHHhhCC-CeEEEeCCCCCCCHHHHHHHHHHHHH
Q 042733 148 VEFVANP-SIISRDEPISGLDARAATTVIRMVRN 180 (531)
Q Consensus 148 ~aL~~~p-~lllLDEPtsgLD~~~~~~i~~~L~~ 180 (531)
.++...| .++++||. ..|++..+..+++.+.+
T Consensus 113 ~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~ 145 (311)
T 4fcw_A 113 EAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDD 145 (311)
T ss_dssp HHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHH
T ss_pred HHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhc
Confidence 3344344 79999998 67888888888888765
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.014 Score=62.63 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G 68 (531)
+++..+|+|||||||||++|.+
T Consensus 61 g~n~i~G~NGaGKS~lleAl~~ 82 (517)
T 4ad8_A 61 GFCAFTGETGAGKSIIVDALGL 82 (517)
T ss_dssp SEEEEEESHHHHHHHHTHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 5788888889999999999944
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.047 Score=54.89 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=26.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcc
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYP 85 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~ 85 (531)
.+-+.+|+||+||||++..|++.... ..|++.+.+.+
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D 142 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAAD 142 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 46677899999999999999995321 01455665544
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.003 Score=60.30 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=26.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCccc
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPE 86 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~ 86 (531)
.+-+..|++|||||||+|+|+|. + |++.+.+.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~--~----g~v~~~~~~~ 54 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY--K----NDICLLTEPV 54 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG--T----TTEEEECCTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc--c----CCeEEEecCH
Confidence 46678899999999999999998 2 3566766653
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.039 Score=57.97 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=44.9
Q ss_pred HHHHHHHh--hCCCeEEEeCCCCCCCH----------HHHHHHHHHHHHHHHc-CCeEEEEecCC-----------ch--
Q 042733 144 LTVAVEFV--ANPSIISRDEPISGLDA----------RAATTVIRMVRNTVDM-GRTVVCTIHQP-----------SI-- 197 (531)
Q Consensus 144 v~iA~aL~--~~p~lllLDEPtsgLD~----------~~~~~i~~~L~~l~~~-g~tvi~~~H~~-----------~~-- 197 (531)
.+.++.+. .+++++++|..+.-.+. ....++.+.|+.++++ +.+||+++|-. ..
T Consensus 299 ~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~d 378 (444)
T 2q6t_A 299 RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSD 378 (444)
T ss_dssp HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGG
T ss_pred HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHH
Confidence 34455555 58999999998754332 1234677778888875 89999998832 10
Q ss_pred -----HHHhccCeEEEEcc
Q 042733 198 -----DIFYSFDELFLLKQ 211 (531)
Q Consensus 198 -----~i~~~~d~v~lL~~ 211 (531)
.+...+|.|+.|.+
T Consensus 379 lr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 379 LRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp GGGGCTTGGGCSEEEEEEE
T ss_pred hcchhHHHHhCCEEEEEec
Confidence 23456788888864
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.011 Score=60.44 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEec
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMG-RTVVCTIH 193 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H 193 (531)
.++++..+++..+.+|+++++.-..+..|... ....++++.+...| .++++.+.
T Consensus 158 ~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 158 IVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788999999999999877774334445433 44556666665555 56666665
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.065 Score=54.54 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..||.|+|||||+++|+...
T Consensus 120 vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 120 ILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 4567899999999999998754
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.33 E-value=0.014 Score=54.84 Aligned_cols=45 Identities=7% Similarity=0.092 Sum_probs=31.5
Q ss_pred hCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCe-EEEEecCCc
Q 042733 152 ANPSIISRDEPISGL-DARAATTVIRMVRNTVDMGRT-VVCTIHQPS 196 (531)
Q Consensus 152 ~~p~lllLDEPtsgL-D~~~~~~i~~~L~~l~~~g~t-vi~~~H~~~ 196 (531)
.+|+++++||.-.-- +......+.+.+....+.+.. +|++++...
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 578999999965422 233377788888887766665 888877543
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.007 Score=62.04 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G 68 (531)
++++.+||||||||||+++|.+
T Consensus 27 g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHH
Confidence 5899999999999999999986
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.045 Score=52.05 Aligned_cols=42 Identities=19% Similarity=0.098 Sum_probs=26.6
Q ss_pred HhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEE
Q 042733 150 FVANPSIISRDEPIS-GLDARAATTVIRMVRNTVDMGRTVVCT 191 (531)
Q Consensus 150 L~~~p~lllLDEPts-gLD~~~~~~i~~~L~~l~~~g~tvi~~ 191 (531)
.+.+-+++++||.-. ++|.......++.+.....+-++++++
T Consensus 173 ~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~S 215 (235)
T 3llm_A 173 GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMS 215 (235)
T ss_dssp CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 578899999999976 687766654444444332222344444
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0081 Score=55.53 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=21.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+-+.+||+|||||||+++|++..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 367889999999999999999976
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.089 Score=50.27 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..||.|+|||||.+.++...
T Consensus 42 vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3577999999999999998743
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.011 Score=55.24 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
.+-+.+||+|||||||++.|++..+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567899999999999999999765
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.0096 Score=53.46 Aligned_cols=24 Identities=33% Similarity=0.227 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
+-+.+|++|||||||+++|++...
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 457789999999999999999653
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.023 Score=52.81 Aligned_cols=25 Identities=32% Similarity=0.322 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
.+-+..|++|||||||.+.|++..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567889999999999999999753
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.014 Score=54.62 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCchHHHHHHHHh
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLA 67 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~ 67 (531)
.+++..+|||||||||++++|.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 3789999999999999999885
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.013 Score=54.36 Aligned_cols=24 Identities=25% Similarity=0.164 Sum_probs=21.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+-..+||+|||||||+++|++..
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999964
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.013 Score=59.14 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-+.+||+|||||||+++|.+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999964
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.014 Score=52.61 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=20.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+-+.+|++||||||++++|++..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999864
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.24 Score=49.56 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.3
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+..||.|+|||||.+.++...
T Consensus 49 LL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 49 LLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp EEESSSSSCHHHHHHHHHHHT
T ss_pred EEECCCCccHHHHHHHHHHHc
Confidence 556899999999999999854
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.012 Score=63.80 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=26.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCc
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGY 84 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~ 84 (531)
.-+.+||+|+|||||+|+|++.... ..|.+...|.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l~~--~~~~i~~~~~ 144 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSLGR--KFVRISLGGV 144 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHTC--EEEEECCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC--CeEEEEeccc
Confidence 5678999999999999999996532 3456665553
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.33 E-value=0.017 Score=60.42 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCC
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.++++.+|||||||||||++|++..
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhh
Confidence 3799999999999999999999854
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.27 Score=48.93 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G 68 (531)
..+....|+.|+|||||+..++.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36788889999999999998875
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.06 E-value=0.02 Score=53.12 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+-+..|++|||||||+++|++..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 467888999999999999999953
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.035 Score=55.72 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHH--h--hCCCeEEEeCCCCCC-----CH----------HHHHHHHHHHHHH---H-HcCCeEEEEecCC
Q 042733 139 EQRKRLTVAVEF--V--ANPSIISRDEPISGL-----DA----------RAATTVIRMVRNT---V-DMGRTVVCTIHQP 195 (531)
Q Consensus 139 GerqRv~iA~aL--~--~~p~lllLDEPtsgL-----D~----------~~~~~i~~~L~~l---~-~~g~tvi~~~H~~ 195 (531)
+|+..+.++..+ + .+|+++++|--++=. +. ..++.+-+.|++| + +.+.++|++-|-.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 555556666665 3 479999999877643 11 1234444555553 4 4589999998863
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.018 Score=53.27 Aligned_cols=42 Identities=19% Similarity=0.062 Sum_probs=20.0
Q ss_pred ccceEEEEEeEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCC
Q 042733 23 FEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 23 ~~~~~l~~~~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+.....+|+++....+ .+-+.+|+.||||||+.+.|++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~------~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 8 SSGVDLGTENLYFQSNAM------VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------------CC------CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCceeEecCCC------CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344556677887776421 245677888999999999999754
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=93.73 E-value=0.029 Score=52.40 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=21.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
.+-..+||+|||||||++.|.+..+
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567789999999999999998644
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.27 Score=50.93 Aligned_cols=51 Identities=18% Similarity=0.144 Sum_probs=32.8
Q ss_pred HHHHHhhCCCeEEEeCCCCC----------CCHHHHHHHHHHHHHHHH----cCCeEEEEecCCc
Q 042733 146 VAVEFVANPSIISRDEPISG----------LDARAATTVIRMVRNTVD----MGRTVVCTIHQPS 196 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsg----------LD~~~~~~i~~~L~~l~~----~g~tvi~~~H~~~ 196 (531)
+..|-...|.|+++||--+- =|......+.++|..+-. .+..||.+|..|+
T Consensus 234 F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd 298 (405)
T 4b4t_J 234 FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLD 298 (405)
T ss_dssp HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSS
T ss_pred HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChh
Confidence 34444568999999996432 234455566666666532 2456888998875
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.088 Score=53.18 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
.-+..||.|+|||||++.++..
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 3467789999999999999874
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.026 Score=54.19 Aligned_cols=31 Identities=39% Similarity=0.413 Sum_probs=23.8
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSG 83 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g 83 (531)
-+.+||+|+|||||+++|++.... |.+.+++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~----~~i~~~~ 82 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARV----PFITASG 82 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC----CEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC----CEEEeeH
Confidence 467899999999999999996542 3455554
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.036 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-..+|++|+|||||++.++|..
T Consensus 6 v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 3678999999999999999953
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.026 Score=52.17 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHhC
Q 042733 49 SGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G 68 (531)
-+..|++||||||+.+.|++
T Consensus 4 i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHH
Confidence 46788999999999999998
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.034 Score=52.15 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+.+||+||||||+.++|++.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999984
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=93.05 E-value=0.22 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=18.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G 68 (531)
.+....++.|+|||||...++.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHH
Confidence 5677788889999999987765
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.29 Score=51.20 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=44.1
Q ss_pred HHHHHHHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHH----cCCeEEEEecCCchHHHhccCeEEEE
Q 042733 144 LTVAVEFVANPSIISRDEPIS----------GLDARAATTVIRMVRNTVD----MGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 144 v~iA~aL~~~p~lllLDEPts----------gLD~~~~~~i~~~L~~l~~----~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
-.+..|-...|.|+|+||--+ +-|......+.++|..+-. .+..||.+|..|+. .|.-+ +
T Consensus 265 ~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~-----LDpAl-l 338 (437)
T 4b4t_L 265 EMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT-----LDPAL-L 338 (437)
T ss_dssp HHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS-----SCTTT-T
T ss_pred HHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh-----hCHHH-h
Confidence 334555567899999999843 2344455556666666632 24578899998752 23322 3
Q ss_pred ccCce---eeecCCCCC
Q 042733 210 KQVGQ---EISVGPLGP 223 (531)
Q Consensus 210 ~~~G~---~v~~G~~~~ 223 (531)
.. || .++.+.|+.
T Consensus 339 Rp-GRfD~~I~i~lPd~ 354 (437)
T 4b4t_L 339 RP-GRLDRKVEIPLPNE 354 (437)
T ss_dssp ST-TSEEEEECCCCCCH
T ss_pred CC-CccceeeecCCcCH
Confidence 32 43 467777753
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.11 Score=55.42 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..||.|+|||+|.++|+...
T Consensus 241 vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 241 ILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 3567888999999999998754
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.33 Score=50.69 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=32.4
Q ss_pred HHHHhhCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHHH----cCCeEEEEecCCc
Q 042733 147 AVEFVANPSIISRDEP----------ISGLDARAATTVIRMVRNTVD----MGRTVVCTIHQPS 196 (531)
Q Consensus 147 A~aL~~~p~lllLDEP----------tsgLD~~~~~~i~~~L~~l~~----~g~tvi~~~H~~~ 196 (531)
..|-...|.++++||- .++-|....+.+.++|..+-. .+..||.+|+.|+
T Consensus 259 ~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 259 RLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp HHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred HHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 3344567999999996 234455555556666666532 2557888998875
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=92.89 E-value=0.062 Score=56.33 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-..+|++|+|||||+|.|+|..
T Consensus 183 vaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 183 VAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEECSTTSSHHHHHHHHHTST
T ss_pred EEEECCCCCCHHHHHHHHhCCc
Confidence 3678999999999999999964
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.28 Score=49.79 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.1
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+..||.|+|||||.++++...
T Consensus 88 LL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 88 LLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp EEECSTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHh
Confidence 556889999999999999854
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.054 Score=48.80 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-..+|++|+|||||++.|+|.
T Consensus 10 i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999995
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.29 Score=51.52 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=34.2
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCC----------CHHHHHHHHHHHHHHHH----cCCeEEEEecCCc
Q 042733 143 RLTVAVEFVANPSIISRDEPISGL----------DARAATTVIRMVRNTVD----MGRTVVCTIHQPS 196 (531)
Q Consensus 143 Rv~iA~aL~~~p~lllLDEPtsgL----------D~~~~~~i~~~L~~l~~----~g~tvi~~~H~~~ 196 (531)
|-.+..|-...|.|+++||--+-. +......+.++|..+-. .+..||.+|..|+
T Consensus 292 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 292 RELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp HHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred HHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc
Confidence 334455556789999999986432 33445556666666532 2446788888764
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=92.67 E-value=0.081 Score=54.14 Aligned_cols=21 Identities=14% Similarity=0.461 Sum_probs=19.7
Q ss_pred cEEEEEcCCCchHHHHHHHHh
Q 042733 47 SLSGAFRPGGAGKTTLMDVLA 67 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~ 67 (531)
+++...|+|||||||+|.+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 789999999999999999985
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.5 Score=57.33 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=38.9
Q ss_pred hCCCeEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HH-cCCeEEEEecC----------C-----chHH
Q 042733 152 ANPSIISRDEPISGLD-A------------RAATTVIRMVRNT---VD-MGRTVVCTIHQ----------P-----SIDI 199 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD-~------------~~~~~i~~~L~~l---~~-~g~tvi~~~H~----------~-----~~~i 199 (531)
.+|+++++|+...=.. . ...+++.+.++++ ++ .|.+||++.|- | +..+
T Consensus 809 ~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~L 888 (1706)
T 3cmw_A 809 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 888 (1706)
T ss_dssp TCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHH
T ss_pred cCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCccccCCcchh
Confidence 5899999999987552 1 1234455555553 44 59999999882 1 1134
Q ss_pred HhccCeEEEEcc
Q 042733 200 FYSFDELFLLKQ 211 (531)
Q Consensus 200 ~~~~d~v~lL~~ 211 (531)
.+.+|-++.+.+
T Consensus 889 eq~ADvvl~L~R 900 (1706)
T 3cmw_A 889 KFYASVRLDIRR 900 (1706)
T ss_dssp HHHEEEEEEEEE
T ss_pred hheeeEEEEEEe
Confidence 556788888864
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=92.59 E-value=0.051 Score=55.94 Aligned_cols=24 Identities=29% Similarity=0.067 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+.+..||+|||||||+++|+|..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 466788999999999999999854
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.50 E-value=0.27 Score=51.41 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=40.9
Q ss_pred HHHHHHhhCCCeEEEeCCC----------CCCCHHHHHHHHHHHHHHHH----cCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 145 TVAVEFVANPSIISRDEPI----------SGLDARAATTVIRMVRNTVD----MGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPt----------sgLD~~~~~~i~~~L~~l~~----~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
.+..|-...|.|+++||-- ++=|......+..+|..+-. .+..||.+|..|+. .|.-+ +.
T Consensus 266 lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~-----LD~Al-lR 339 (434)
T 4b4t_M 266 AFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV-----LDPAL-LR 339 (434)
T ss_dssp HHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC-----CCTTT-CS
T ss_pred HHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh-----cCHhH-hc
Confidence 3444555789999999952 12233444455566666532 24568889988752 23222 22
Q ss_pred cCce---eeecCCCCC
Q 042733 211 QVGQ---EISVGPLGP 223 (531)
Q Consensus 211 ~~G~---~v~~G~~~~ 223 (531)
. || .++.+.|+.
T Consensus 340 p-GRfD~~I~i~lPd~ 354 (434)
T 4b4t_M 340 S-GRLDRKIEFPLPSE 354 (434)
T ss_dssp T-TSEEEEEECCCCCH
T ss_pred C-CceeEEEEeCCcCH
Confidence 2 43 467777753
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=92.41 E-value=0.3 Score=48.60 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..||.|+|||+|.++++...
T Consensus 54 vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 54 ILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp EEEECSSSSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 3667899999999999998753
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.68 Score=47.35 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..||.|+|||+|.++|+...
T Consensus 151 vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 151 LLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 4667888999999999998764
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=92.28 E-value=0.33 Score=42.14 Aligned_cols=42 Identities=5% Similarity=0.046 Sum_probs=30.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQP 195 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~ 195 (531)
+..++++||.- .|++..+..+.+.+.+..+.+..+|+++..+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 46799999965 6788888888888776533355677776643
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=92.25 E-value=0.064 Score=48.48 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=18.3
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|++|+|||||++.++|.
T Consensus 6 ~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 6 MIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEESCTTSSHHHHHHHHTCC
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999995
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=92.05 E-value=0.069 Score=47.88 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-..+|++|+|||||++.|+|.
T Consensus 7 i~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999995
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.064 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
.+-+.+|++|||||||+|.|+|.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999984
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.94 E-value=0.062 Score=49.56 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-+..|+.||||||+.+.|++..
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56788999999999999998753
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=91.72 E-value=0.059 Score=58.28 Aligned_cols=24 Identities=38% Similarity=0.248 Sum_probs=21.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+-+.+|++|||||||+|+|+|..
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhh
Confidence 467889999999999999999964
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=91.59 E-value=0.086 Score=48.82 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=20.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
.+-..+||+|||||||.+.|+...+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3567889999999999999987543
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=91.32 E-value=0.09 Score=47.93 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+.+..|+.|||||||++.|.+.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5577889999999999999984
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.96 E-value=0.046 Score=55.91 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=27.8
Q ss_pred EEEEEeEEEEEeCCCccccccEE---EEEcCCCchHHHHHHHHhCC
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLS---GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs---~~i~~gGaGKTTLLk~L~G~ 69 (531)
.+.+++++..+. .+.++++++ ..+|++|+|||||++.|.|.
T Consensus 17 ~v~~~~l~~~~~--~k~~~~~~~~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 17 YVGFANLPNQVH--RKSVKKGFEFTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ----CCHHHHHH--THHHHHCCEECEEECCCTTSCHHHHHHHHTTC
T ss_pred eEEeccchHHhC--CeeecCCCCEEEEEEcCCCCCHHHHHHHHhCC
Confidence 456677766553 344566665 46799999999999999885
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.91 E-value=0.81 Score=47.65 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=42.6
Q ss_pred HHHHHHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHH----cCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 145 TVAVEFVANPSIISRDEPIS----------GLDARAATTVIRMVRNTVD----MGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPts----------gLD~~~~~~i~~~L~~l~~----~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
.+..|--..|.|+++||--+ +=|......+.++|..+-. .+..||.+|..|+. .|.-+ +.
T Consensus 267 lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~-----LDpAL-lR 340 (437)
T 4b4t_I 267 IFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET-----LDPAL-IR 340 (437)
T ss_dssp HHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT-----CCTTS-SC
T ss_pred HHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh-----cCHHH-hc
Confidence 34444456799999999643 2244455566666666532 24568889998752 23332 33
Q ss_pred cCce---eeecCCCCC
Q 042733 211 QVGQ---EISVGPLGP 223 (531)
Q Consensus 211 ~~G~---~v~~G~~~~ 223 (531)
. || .++.+.|+.
T Consensus 341 p-GRfD~~I~v~lPd~ 355 (437)
T 4b4t_I 341 P-GRIDRKILFENPDL 355 (437)
T ss_dssp T-TTEEEEECCCCCCH
T ss_pred C-CceeEEEEcCCcCH
Confidence 2 44 367777753
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=0.13 Score=45.53 Aligned_cols=21 Identities=19% Similarity=-0.009 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..|+.||||||+.+.|+..
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999865
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=90.63 E-value=0.12 Score=46.70 Aligned_cols=23 Identities=30% Similarity=0.118 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-+..|+.||||||+.+.|++..
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999853
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=90.57 E-value=0.11 Score=50.49 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.8
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+.+|++|||||||++.|+|..
T Consensus 7 ~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 7 ALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEECSSSSHHHHHHHHHTTC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999964
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=90.50 E-value=0.59 Score=48.92 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..||.|+|||||.++++...
T Consensus 170 vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 170 ILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 3567888999999999999854
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=90.26 E-value=0.11 Score=45.20 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|++|+|||||++.+.+.
T Consensus 7 ~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 7 VVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56889999999999999874
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=90.03 E-value=0.99 Score=47.87 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=43.2
Q ss_pred HHHHHHHHh--hCCCeEEEeCCCCCC-------CH-HHHHHHHHHHHHHHHc-CCeEEEEecCCc---------------
Q 042733 143 RLTVAVEFV--ANPSIISRDEPISGL-------DA-RAATTVIRMVRNTVDM-GRTVVCTIHQPS--------------- 196 (531)
Q Consensus 143 Rv~iA~aL~--~~p~lllLDEPtsgL-------D~-~~~~~i~~~L~~l~~~-g~tvi~~~H~~~--------------- 196 (531)
-++.++.++ .+|+++++|=-+. + +. ....++.+.|+.++++ +.+||+++|-..
T Consensus 342 i~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l 420 (503)
T 1q57_A 342 LLAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSI 420 (503)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCS
T ss_pred HHHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCCh
Confidence 334444444 4799999995543 2 21 2334577778888765 999999988542
Q ss_pred ------hHHHhccCeEEEEcc
Q 042733 197 ------IDIFYSFDELFLLKQ 211 (531)
Q Consensus 197 ------~~i~~~~d~v~lL~~ 211 (531)
..+...+|-|+.|.+
T Consensus 421 ~dlr~s~~ie~~aD~vi~l~r 441 (503)
T 1q57_A 421 TDLRGSGALRQLSDTIIALER 441 (503)
T ss_dssp SSCSSSSHHHHHCSEEEEEEE
T ss_pred hhhccchHhhecCcEEEEEEe
Confidence 123445788888854
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=89.87 E-value=1.3 Score=43.69 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=28.6
Q ss_pred CCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 153 NPSIISRDEPISGLD-ARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 153 ~p~lllLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+++++++||.- .|. ......+.+.+.+.. .+..+|+++.++.
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYS-SNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGG
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcc
Confidence 78999999984 344 556666666665543 3567888887654
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=89.86 E-value=0.18 Score=53.01 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCC-CCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 140 QRKRLTVAVEFVANPSIISRDEP-ISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 140 erqRv~iA~aL~~~p~lllLDEP-tsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+++....+...+.+++++++... +.++.... ..+.+.++ +.++.+|++.+-.+
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~D 142 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKLD 142 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC-
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECcc
Confidence 44455566667778887665544 44565544 44555543 35777777776544
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=89.81 E-value=0.16 Score=44.39 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 7 ~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 7 AVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEECCTTSSHHHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999984
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=89.65 E-value=0.18 Score=44.41 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.7
Q ss_pred EEEEEcCCCchHHHHHHHH
Q 042733 48 LSGAFRPGGAGKTTLMDVL 66 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L 66 (531)
+-+..|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3467889999999999999
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=89.60 E-value=0.14 Score=44.77 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 9 ~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 9 VVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEECSTTSSHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 56789999999999999874
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.58 E-value=0.13 Score=46.36 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+.+|+.|+|||||++.|.+..
T Consensus 51 i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 51 IIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 3678999999999999999864
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.45 E-value=0.9 Score=55.94 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=39.1
Q ss_pred hCCCeEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HH-cCCeEEEEecCCch---------------HH
Q 042733 152 ANPSIISRDEPISGLD-A------------RAATTVIRMVRNT---VD-MGRTVVCTIHQPSI---------------DI 199 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD-~------------~~~~~i~~~L~~l---~~-~g~tvi~~~H~~~~---------------~i 199 (531)
.+|+++++|.-++-.. + ..++.+.+.|+++ ++ .+.+||++.|-... .+
T Consensus 460 ~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~al 539 (2050)
T 3cmu_A 460 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 539 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHH
T ss_pred cCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchh
Confidence 5799999999876552 1 1234455666665 44 58899998874211 24
Q ss_pred HhccCeEEEEcc
Q 042733 200 FYSFDELFLLKQ 211 (531)
Q Consensus 200 ~~~~d~v~lL~~ 211 (531)
...+|-++.|.+
T Consensus 540 e~~ADv~l~L~R 551 (2050)
T 3cmu_A 540 KFYASVRLDIRR 551 (2050)
T ss_dssp HHHEEEEEEEEE
T ss_pred hhhCCEEEEEEe
Confidence 456788888875
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=89.38 E-value=0.2 Score=44.74 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
+-...|+.||||||+.+.|+....
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 346778999999999999998653
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=89.32 E-value=0.15 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+.+|++|+|||||++.|+|.
T Consensus 58 ~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4567889999999999999984
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.29 E-value=0.18 Score=45.52 Aligned_cols=21 Identities=38% Similarity=0.341 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..|+.||||||+.+.|+..
T Consensus 7 I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 466789999999999999853
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=89.25 E-value=0.18 Score=45.21 Aligned_cols=22 Identities=32% Similarity=0.196 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-...|+.||||||+.+.|+...
T Consensus 7 i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 3567899999999999998753
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=89.20 E-value=0.21 Score=45.21 Aligned_cols=23 Identities=30% Similarity=0.195 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-...|++||||||+.+.|++..
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 45677899999999999999853
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=89.20 E-value=0.16 Score=44.35 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.9
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.|..
T Consensus 6 ~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 6 LLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEESTTSSHHHHHHHHCCC-
T ss_pred EEECCCCCCHHHHHHHHcCcc
Confidence 468899999999999999853
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.07 E-value=0.16 Score=44.10 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=18.4
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 5 ~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 5 VIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEECCTTSSHHHHHHHHHHCC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999854
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.00 E-value=0.2 Score=44.04 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.1
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.|..
T Consensus 8 ~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 8 VLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEECCTTSSHHHHHHHHHCC-
T ss_pred EEECCCCccHHHHHHHHhcCC
Confidence 568899999999999999853
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=88.93 E-value=0.34 Score=43.91 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|++|+|||||++.+.+.
T Consensus 27 ~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 27 LFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 67889999999999999973
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=88.89 E-value=0.17 Score=44.07 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 8 ~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 8 IMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999874
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=88.79 E-value=1.8 Score=45.25 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCe--EEEEec
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRT--VVCTIH 193 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~t--vi~~~H 193 (531)
++.+|+.-|...+.+.++.+.|+|. ++.. ++...++++.+ .|.. +|++-+
T Consensus 266 ~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~---~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 266 EDWGKLSMAIGEISNSNINIFDKAG--QSVN---YIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp SCHHHHHHHHHHHHTSCEEEECCSS--CBHH---HHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCC--CCHH---HHHHHHHHHHHHhCCCCeEEEEec
Confidence 4677888888888888898888874 5443 45555666654 3666 777754
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=88.78 E-value=0.24 Score=44.15 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHhC
Q 042733 49 SGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G 68 (531)
-...|+.||||||+.+.|+.
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 45678999999999999987
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=88.77 E-value=0.57 Score=52.77 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.5
Q ss_pred EEEcCCCchHHHHHHHHhCCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
+..||.|+|||||.|++++...
T Consensus 242 LL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 242 LLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp EEECCTTSCHHHHHHHHHTTTT
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 4557889999999999999753
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=88.75 E-value=0.2 Score=45.67 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
...|+.||||||+.+.|+...
T Consensus 4 ~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 4 AIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEECCCccCHHHHHHHHHHhc
Confidence 467888999999999999854
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=88.67 E-value=0.23 Score=43.55 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 6 ~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 6 MLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEECSTTSSHHHHHHHHHCC
T ss_pred EEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999974
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=88.64 E-value=0.2 Score=45.25 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.2
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.|.+..
T Consensus 27 ~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 27 ALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEBTTSSHHHHHHHHHTC-
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999863
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.57 E-value=0.2 Score=44.34 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.|.+.
T Consensus 13 ~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 13 LIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEECCTTSCHHHHHHHHCSC
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 56889999999999999985
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=88.49 E-value=0.2 Score=44.91 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=18.6
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.|..
T Consensus 27 ~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 27 AFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEBTTSSHHHHHHHHHTSC
T ss_pred EEECCCCCCHHHHHHHHHcCc
Confidence 578899999999999999964
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=88.42 E-value=0.32 Score=45.15 Aligned_cols=70 Identities=17% Similarity=0.049 Sum_probs=52.4
Q ss_pred HHHHHHHHHHh--hCCCeEEEeCCCC--CCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 141 RKRLTVAVEFV--ANPSIISRDEPIS--GLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 141 rqRv~iA~aL~--~~p~lllLDEPts--gLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
++.+..|+..+ .+.++++|||.+. .++.....++++.|.+ +-.+..||+|...+..++.+.+|-|--|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 44666677777 5689999999976 2344445567777753 224788999999999999999999988864
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=88.40 E-value=0.24 Score=43.79 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 12 ~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 12 TIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp EEESCTTTTHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999984
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=88.37 E-value=0.25 Score=47.61 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-...||+|||||||.+.|++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 34678999999999999999854
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=88.33 E-value=0.21 Score=46.03 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=18.2
Q ss_pred EEEcCCCchHHHHHHHHhCCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
...||+|||||||++.|....+
T Consensus 5 Vi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 5 VISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEECCTTSSHHHHHHHHHHHCT
T ss_pred EEECCCCCCHHHHHHHHHHhCC
Confidence 3578999999999999976543
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=88.30 E-value=1.4 Score=53.40 Aligned_cols=60 Identities=8% Similarity=0.025 Sum_probs=39.2
Q ss_pred hCCCeEEEeCCCCCCCH-------------HHHHHHHHHHHHH---HH-cCCeEEEEecCCc---------------hHH
Q 042733 152 ANPSIISRDEPISGLDA-------------RAATTVIRMVRNT---VD-MGRTVVCTIHQPS---------------IDI 199 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~-------------~~~~~i~~~L~~l---~~-~g~tvi~~~H~~~---------------~~i 199 (531)
.+|+++++|..++=... ...+.+.+.++++ ++ .+.+||++.|-.. ..+
T Consensus 460 ~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~al 539 (1706)
T 3cmw_A 460 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 539 (1706)
T ss_dssp TCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHH
T ss_pred cCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcce
Confidence 57999999999876541 1223444555554 34 5999999988421 134
Q ss_pred HhccCeEEEEcc
Q 042733 200 FYSFDELFLLKQ 211 (531)
Q Consensus 200 ~~~~d~v~lL~~ 211 (531)
...+|-++.+.+
T Consensus 540 e~~ADv~L~L~R 551 (1706)
T 3cmw_A 540 KFYASVRLDIRR 551 (1706)
T ss_dssp HHHEEEEEEEEE
T ss_pred eeeCCEEEEEEe
Confidence 566788887765
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=88.28 E-value=0.2 Score=45.03 Aligned_cols=21 Identities=38% Similarity=0.387 Sum_probs=18.7
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|++|+|||||++.+.+..
T Consensus 20 ~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 20 LLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEESTTSSHHHHHHHHCCSC
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999863
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=88.27 E-value=0.21 Score=44.64 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=17.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 5 ~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 5 IFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEBTTSSHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHhCc
Confidence 46789999999999999985
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=88.22 E-value=0.19 Score=43.88 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=18.3
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 10 ~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 10 CLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEECCTTSSHHHHHHHHHHSC
T ss_pred EEECcCCCCHHHHHHHHHcCC
Confidence 567899999999999999853
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=88.20 E-value=0.19 Score=45.16 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|++|+|||||++.|++.
T Consensus 25 ~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 25 VVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999874
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=88.16 E-value=0.28 Score=44.46 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.|||||||++.|...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4567788999999999999874
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=88.08 E-value=0.2 Score=43.68 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 7 ~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 7 VLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999874
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=88.04 E-value=0.19 Score=46.09 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|++|+|||||++.+.+.
T Consensus 29 ~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 29 VFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEETTSSHHHHHHHHSCC
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 67889999999999999874
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=87.89 E-value=0.21 Score=43.35 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=17.5
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 7 ~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 7 VVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56889999999999999863
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=87.88 E-value=0.21 Score=43.75 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 10 ~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 10 VLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEECCTTSCHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 56789999999999999974
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=87.87 E-value=0.21 Score=44.23 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 12 ~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 12 IILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999874
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=87.83 E-value=0.21 Score=43.45 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 7 ~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 7 VVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEECSTTSSHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999874
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=87.75 E-value=0.26 Score=48.17 Aligned_cols=20 Identities=25% Similarity=0.539 Sum_probs=18.3
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|++|+|||||++.|+|.
T Consensus 7 ~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 7 ALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEECCTTSSHHHHHHHHHCC
T ss_pred EEECCCCCCHHHHHHHHHCC
Confidence 56899999999999999995
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=87.74 E-value=0.22 Score=44.06 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 11 ~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 11 ILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56889999999999999874
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=87.67 E-value=0.27 Score=44.22 Aligned_cols=21 Identities=38% Similarity=0.287 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..|+.||||||+.+.|+..
T Consensus 14 i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 14 ILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 356889999999999999843
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=87.67 E-value=0.3 Score=43.90 Aligned_cols=21 Identities=19% Similarity=0.087 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-...|+.||||||+.+.|+-.
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 456788999999999999874
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=87.58 E-value=0.21 Score=44.21 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 13 ~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 13 VVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEECTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56789999999999999884
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=87.57 E-value=0.21 Score=43.66 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=18.2
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 7 ~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 7 LLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEESTTSSHHHHHHHHHHCC
T ss_pred EEECcCCCCHHHHHHHHHhCC
Confidence 467899999999999999853
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=87.33 E-value=0.36 Score=46.09 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.9
Q ss_pred cEEEEEcCCCchHHHHHHHHh
Q 042733 47 SLSGAFRPGGAGKTTLMDVLA 67 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~ 67 (531)
.+....|+||+|||||++.|+
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHH
Confidence 567788999999999999998
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=87.21 E-value=0.33 Score=45.15 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G 68 (531)
+-+..|+.||||||+.+.|+.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 456778899999999999987
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=87.21 E-value=0.28 Score=45.57 Aligned_cols=23 Identities=22% Similarity=0.039 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-...|+.||||||+.+.|++..
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 44567889999999999999864
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=87.12 E-value=0.25 Score=43.07 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 10 ~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 10 VLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999873
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=87.11 E-value=0.28 Score=43.32 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 10 ~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 10 VVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEECCTTSSHHHHHHHHHGG
T ss_pred EEECcCCCCHHHHHHHHHhC
Confidence 56789999999999999984
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=87.10 E-value=0.3 Score=43.97 Aligned_cols=21 Identities=33% Similarity=0.167 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-..+|+.||||||+.+.|+..
T Consensus 8 i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999864
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=87.01 E-value=0.25 Score=44.47 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.|.+.
T Consensus 11 ~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 11 VLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999985
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=86.96 E-value=0.19 Score=46.39 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
...|+.||||||+++.|+...
T Consensus 4 ~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 4 AIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 456788999999999998854
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=86.92 E-value=0.25 Score=44.02 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.|.+.
T Consensus 8 ~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 8 VVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999974
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.84 E-value=0.3 Score=50.49 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+.+|++|+|||||+++|+|.
T Consensus 25 vgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 25 IGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp EEEECCSSSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 578999999999999999996
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=86.83 E-value=0.2 Score=44.58 Aligned_cols=20 Identities=35% Similarity=0.277 Sum_probs=17.4
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 22 ~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 22 LILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp EEEEETTSSHHHHHHHTCCS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999863
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=86.82 E-value=0.052 Score=55.91 Aligned_cols=42 Identities=19% Similarity=0.159 Sum_probs=31.0
Q ss_pred EEEEEeEEEEEeCCCccccc--------------cEEEEEcC---------CCchHHHHHHHHhCC
Q 042733 27 YISLNEIVYSVDMPQIGDLN--------------SLSGAFRP---------GGAGKTTLMDVLAGR 69 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~--------------~vs~~i~~---------gGaGKTTLLk~L~G~ 69 (531)
.+.|+|+++.|+. ++..|+ |+.+.+++ .|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP~-er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHAN-SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCC-SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCC-CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4678889988873 445666 55555544 499999999999884
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=86.79 E-value=3.8 Score=42.78 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=19.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G 68 (531)
.+-..+|++|+||||++..|+.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHH
Confidence 4678899999999999999986
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=86.73 E-value=0.27 Score=43.35 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 19 ~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 19 IIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56789999999999999984
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=86.70 E-value=0.35 Score=43.66 Aligned_cols=22 Identities=36% Similarity=0.240 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-...|+.||||||+.+.|+..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3456788999999999999864
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=86.68 E-value=0.27 Score=43.02 Aligned_cols=20 Identities=35% Similarity=0.297 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 11 ~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 11 LILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 56889999999999999773
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=86.65 E-value=0.27 Score=43.68 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 22 ~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 22 IMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhhC
Confidence 56789999999999999974
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=86.53 E-value=0.28 Score=43.87 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 15 ~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 15 LALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999973
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=86.40 E-value=0.28 Score=47.06 Aligned_cols=24 Identities=25% Similarity=0.099 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
+-+.+|++||||||+.+.|+....
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 457789999999999999998653
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=86.38 E-value=0.39 Score=45.89 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-...||.||||||+.+.|+..
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999954
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.38 E-value=0.28 Score=44.21 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+.+|+.|+|||||++.+.+.
T Consensus 29 ~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 29 VLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEESSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 57899999999999999984
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=86.32 E-value=0.29 Score=43.96 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=18.9
Q ss_pred EEEcCCCchHHHHHHHHhCCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
..+|+.|+|||||++.+.|...
T Consensus 18 ~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 18 VYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEECSTTSSHHHHHHHHHHTSC
T ss_pred EEECCCCCCHHHHHHHHHhhcc
Confidence 5689999999999999998643
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=86.25 E-value=0.35 Score=43.23 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.4
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 22 ~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 22 LMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEECSTTSSHHHHHHHHTTCC
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999853
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=86.24 E-value=0.34 Score=47.61 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-...||+||||||+.+.|+...
T Consensus 35 livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46778999999999999998754
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=86.16 E-value=0.33 Score=46.84 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=18.5
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.|+|..
T Consensus 5 ~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 5 LLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEESTTSSHHHHHHHHHTTS
T ss_pred EEECCCCCCHHHHHHHHHCCC
Confidence 467889999999999999963
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=86.15 E-value=0.3 Score=42.46 Aligned_cols=19 Identities=32% Similarity=0.174 Sum_probs=17.1
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++.+.+
T Consensus 4 ~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 4 LMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 4688999999999999987
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=86.14 E-value=0.29 Score=43.31 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 16 ~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 16 VLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEECCTTSCHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 56789999999999999874
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=86.14 E-value=0.27 Score=49.23 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..||+|+||||+++++++..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5778999999999999999953
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=86.11 E-value=0.36 Score=43.72 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3567888999999999999875
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=86.06 E-value=0.28 Score=43.20 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=17.5
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 18 ~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 18 VFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56789999999999999863
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=86.02 E-value=0.3 Score=45.08 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=18.7
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.|.+..
T Consensus 16 ~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 16 IIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEECSTTSSHHHHHHHHHHSS
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999854
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=86.02 E-value=0.39 Score=43.15 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=17.3
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
...|+.||||||+.+.|+..
T Consensus 5 ~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 5 IVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEECTTSCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45788899999999999874
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=85.98 E-value=0.34 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|++||||||+.+.|++.
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5678899999999999999974
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=85.98 E-value=0.38 Score=43.70 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=18.4
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 12 ~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 12 LIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEECSTTSSHHHHHHHHHTCC
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999853
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=85.80 E-value=0.25 Score=45.74 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=18.8
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.|.|..
T Consensus 33 ~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 33 AFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEESCHHHHHHHHHHHTTCS
T ss_pred EEEcCCCCCHHHHHHHHhCCC
Confidence 568899999999999999964
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=85.78 E-value=0.32 Score=43.03 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 14 ~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 14 MLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHhC
Confidence 56789999999999999874
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=85.76 E-value=0.3 Score=43.59 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 14 ~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 14 LVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56789999999999999874
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=85.72 E-value=0.32 Score=47.24 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.|.|.
T Consensus 12 ~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 12 MVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEECTTSSHHHHHHHHSSS
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999885
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=85.65 E-value=0.32 Score=44.28 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=17.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 12 ~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 12 IILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 56889999999999999884
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.61 E-value=0.31 Score=44.48 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.++|.
T Consensus 27 ~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 27 MLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEECSTTSSHHHHHHHTCCE
T ss_pred EEECCCCCCHHHHHHHHHhc
Confidence 57899999999999999873
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.58 E-value=0.33 Score=44.10 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 18 ~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 18 IMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56789999999999999874
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=85.54 E-value=0.37 Score=46.15 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=18.6
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+.+|+.|+|||||++.|.|..
T Consensus 26 ~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 26 ILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEECTTSCHHHHHHHHHTSC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999853
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=85.50 E-value=0.3 Score=52.06 Aligned_cols=32 Identities=38% Similarity=0.380 Sum_probs=24.4
Q ss_pred EEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCc
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGY 84 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~ 84 (531)
-+..||+|+|||||+|+|++.... +.+.+++.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~----~~i~i~g~ 98 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARV----PFITASGS 98 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTC----CEEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC----CEEEEehh
Confidence 467899999999999999996542 34556553
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=85.46 E-value=0.43 Score=43.43 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 3467788999999999999976
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.46 E-value=0.38 Score=43.53 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=17.4
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 30 ~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 30 IIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEECSTTSSHHHHHHHHCC-
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999985
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=85.31 E-value=0.41 Score=47.43 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-..+|.+|+|||||++.|.|..
T Consensus 10 V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 10 VAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCc
Confidence 4678999999999999999953
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.30 E-value=0.4 Score=43.73 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=17.4
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 29 ~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 29 LVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEESTTSSHHHHHHHHHC-
T ss_pred EEECcCCCCHHHHHHHHHhC
Confidence 56789999999999999984
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=85.26 E-value=1 Score=41.39 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=18.5
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 29 ~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 29 LALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEESCTTSSHHHHHHHHHCSC
T ss_pred EEECcCCCCHHHHHHHHhcCC
Confidence 567899999999999999853
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=85.20 E-value=0.32 Score=43.87 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 12 ~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 12 VVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEECTTSSHHHHHHHHHHS
T ss_pred EEECCCCCcHHHHHHHHHcC
Confidence 56789999999999999873
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=85.18 E-value=0.35 Score=43.00 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 22 ~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 22 VVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999874
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=85.07 E-value=0.36 Score=43.41 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=17.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 26 ~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 26 LLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56889999999999999884
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=85.04 E-value=0.34 Score=43.47 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 11 ~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 11 VVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999874
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=84.96 E-value=0.44 Score=46.00 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.5
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.|+|..
T Consensus 9 ~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 9 ALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEECCTTSSHHHHHHHHHTTC
T ss_pred EEECCCCCCHHHHHHHHHCCC
Confidence 568899999999999999953
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=84.95 E-value=0.43 Score=42.79 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=18.2
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 20 ~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 20 IIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp EEEESTTSSHHHHHHHHHTTS
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999753
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.95 E-value=0.37 Score=43.37 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=17.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 20 ~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 20 LLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 56889999999999999984
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=84.92 E-value=0.45 Score=42.12 Aligned_cols=21 Identities=29% Similarity=0.143 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..|+.||||||+.+.|+..
T Consensus 5 I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 356788899999999999864
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=84.88 E-value=0.44 Score=44.06 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=16.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..|+.||||||+.+.|+..
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 4 VLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999753
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=84.84 E-value=0.41 Score=46.57 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=18.4
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|..|+|||||++.|+|..
T Consensus 7 ~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 7 GLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEECTTSSHHHHHHHHHTTC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999964
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.82 E-value=0.33 Score=43.67 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.4
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 25 ~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 25 LCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEECTTSSHHHHHHHTSCGG
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 578899999999999999853
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=84.69 E-value=0.35 Score=43.72 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 27 ~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 27 CLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEECTTSSHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 56789999999999999874
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.68 E-value=0.35 Score=44.07 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=17.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 28 ~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 28 VILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCcCHHHHHHHHHhC
Confidence 56889999999999999984
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=84.65 E-value=0.45 Score=44.46 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=18.6
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.|..
T Consensus 33 ~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 33 ILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEECSTTSSHHHHHHHHTTTC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999853
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=84.62 E-value=0.38 Score=43.37 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.1
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++.+.+
T Consensus 24 ~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 24 GIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4688999999999987665
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=84.58 E-value=0.4 Score=42.80 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=18.5
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 25 ~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 25 IIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEETTSSHHHHHHHHHTTS
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 568889999999999999854
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=84.55 E-value=0.39 Score=42.60 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=17.1
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++.+.+
T Consensus 9 ~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 9 VVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 5688999999999999986
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=84.50 E-value=0.4 Score=43.27 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=17.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 25 ~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 25 IIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEESSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999974
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=84.45 E-value=0.56 Score=42.18 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..|+.||||||+.+.|+..
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 456788899999999999753
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=84.40 E-value=0.56 Score=42.90 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-...|+.||||||+.+.|+..
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 356788899999999999874
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=84.36 E-value=0.46 Score=42.83 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 21 ~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 21 VMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEECCTTSCHHHHHHHHSCC
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 57889999999999999985
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.32 E-value=0.52 Score=42.75 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=17.3
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 24 ~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 24 VLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEECSTTSSHHHHHHHHHC-
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56789999999999999984
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=84.32 E-value=0.55 Score=44.46 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-...|+.||||||+++.|+...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 34567888999999999999854
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=84.32 E-value=0.43 Score=44.17 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-..+|+.|+|||||++.|++.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3456789999999999999874
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=84.27 E-value=0.44 Score=46.91 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=18.9
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-..+|+.|||||||++.|+|..
T Consensus 27 I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 27 IVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEcCCCCCHHHHHHHHHCCC
Confidence 3567888999999999999953
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=84.23 E-value=0.42 Score=42.35 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=18.1
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 12 ~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 12 VTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEECSTTSSHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 567899999999999998743
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=84.23 E-value=0.49 Score=43.79 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=17.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..|+.||||||+.+.|+..
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 4 VLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999764
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=84.18 E-value=0.5 Score=43.10 Aligned_cols=22 Identities=18% Similarity=-0.124 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-...|+.||||||+.+.|+...
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 3567888999999999999865
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=84.11 E-value=0.59 Score=42.67 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4567789999999999999884
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=84.10 E-value=0.51 Score=41.84 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..||.|+|||||++.++..
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 367799999999999999874
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=84.05 E-value=0.5 Score=48.37 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=0.0
Q ss_pred EEEEcCCCchHHHHHHHHh
Q 042733 49 SGAFRPGGAGKTTLMDVLA 67 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~ 67 (531)
.+.+|++|||||||++.|+
T Consensus 38 ~~i~G~~G~GKs~~~~~~~ 56 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKMLL 56 (392)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHH
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=84.02 E-value=0.49 Score=42.93 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=18.3
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.|..
T Consensus 24 ~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 24 LLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEESTTSSHHHHHHHHHSCC
T ss_pred EEECCCCCCHHHHHHHHHhcC
Confidence 467889999999999999954
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=84.01 E-value=0.39 Score=43.28 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=18.3
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 27 ~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 27 LIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEESTTSSHHHHHHHHHHHT
T ss_pred EEECCCCcCHHHHHHHHhcCC
Confidence 578899999999999999843
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=83.96 E-value=0.4 Score=43.80 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 12 ~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 12 LLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEESTTSSHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999874
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=83.95 E-value=0.48 Score=45.63 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.7
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+.+|+.|+|||||++.|.|..
T Consensus 40 ~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 40 LVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEECTTSSHHHHHHHHHTSC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999954
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.95 E-value=0.5 Score=43.69 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=17.3
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 38 ~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 38 VLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEECTTSSHHHHHHHHHC-
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999984
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=83.91 E-value=0.43 Score=42.87 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=17.5
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 24 ~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 24 IVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56789999999999999863
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=83.90 E-value=0.43 Score=43.23 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 32 ~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 32 AIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999874
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.86 E-value=0.44 Score=43.36 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=18.3
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 32 ~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 32 VLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEESSTTSSHHHHHHHHHHCC
T ss_pred EEECcCCCCHHHHHHHHHhCC
Confidence 578999999999999998753
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=83.79 E-value=0.44 Score=42.88 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 26 ~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 26 TLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56889999999999999874
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=83.78 E-value=0.44 Score=42.70 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 19 ~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 19 LIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56789999999999999884
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=83.76 E-value=0.54 Score=41.42 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=16.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..|+.||||||+.+.|+..
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 4 YLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEESCTTSCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45678899999999999864
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.75 E-value=2.7 Score=51.77 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCC
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
.++....++.|+|||||+..++..
T Consensus 732 G~lilIaG~PG~GKTtLalqlA~~ 755 (2050)
T 3cmu_A 732 GRIVEIYGPESSGKTTLTLQVIAA 755 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 366777888899999999999873
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=83.63 E-value=0.42 Score=42.40 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=17.0
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++.+.+
T Consensus 10 ~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 10 AILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHc
Confidence 4688999999999999985
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=83.41 E-value=0.47 Score=42.84 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=17.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 27 ~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 27 VVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 57889999999999999984
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=83.41 E-value=0.43 Score=48.81 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=18.2
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+.+|+.|+|||||++.|+|.
T Consensus 5 ~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 5 GIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEECCSSSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999984
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=83.33 E-value=0.51 Score=44.17 Aligned_cols=22 Identities=18% Similarity=0.210 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-...|+.||||||+.+.|+...
T Consensus 10 I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 10 AVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 3567889999999999998643
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=83.29 E-value=0.53 Score=45.49 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=18.5
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.|.|..
T Consensus 43 ~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 43 LVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEESTTSSHHHHHHHHHTSC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999953
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=83.26 E-value=0.67 Score=41.66 Aligned_cols=20 Identities=30% Similarity=0.152 Sum_probs=17.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..|+.||||||+.+.|+..
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 4 AFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEECSTTSCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45678899999999999863
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=83.25 E-value=0.62 Score=42.06 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3456788899999999999864
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=83.25 E-value=0.47 Score=43.31 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 24 ~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 24 LLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEECSTTSSHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999874
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=83.05 E-value=0.45 Score=43.63 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 29 ~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 29 VVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEECTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 56889999999999999984
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=83.03 E-value=0.66 Score=45.94 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+.-..+|+.|+|||||++.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 445678899999999999999953
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=83.01 E-value=0.39 Score=42.48 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 11 ~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 11 GVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEECCGGGCHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56889999999999999874
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=82.95 E-value=0.61 Score=41.88 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..|+.||||||+.+.|+..
T Consensus 5 I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 456788999999999999864
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.90 E-value=0.5 Score=42.59 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=17.5
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 25 ~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 25 AILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCcHHHHHHHHHhC
Confidence 57889999999999999874
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=82.89 E-value=0.52 Score=42.71 Aligned_cols=21 Identities=29% Similarity=0.161 Sum_probs=18.2
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 33 ~v~G~~~vGKSsLi~~l~~~~ 53 (192)
T 2b6h_A 33 LMVGLDAAGKTTILYKLKLGE 53 (192)
T ss_dssp EEEESTTSSHHHHHHHHCSSC
T ss_pred EEECCCCCCHHHHHHHHHhCC
Confidence 568899999999999998743
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=82.86 E-value=0.54 Score=45.76 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=18.9
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-..+|..|+|||||++.|+|..
T Consensus 29 i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEeCCCCCHHHHHHHHHCCC
Confidence 3578889999999999999953
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=82.80 E-value=0.56 Score=43.68 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=17.4
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
...|+.||||||+.+.|+..
T Consensus 9 ~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 9 MISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp EEEESTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999864
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=82.78 E-value=0.51 Score=43.34 Aligned_cols=20 Identities=25% Similarity=0.031 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 11 ~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 11 LFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999874
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=82.72 E-value=0.48 Score=43.59 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=17.5
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 30 ~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 30 VLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHhC
Confidence 57889999999999998863
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.71 E-value=0.67 Score=41.94 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4567788999999999999864
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=82.68 E-value=0.49 Score=48.09 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+.+|++||||||+.++|++.
T Consensus 27 i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999984
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=82.54 E-value=0.53 Score=42.78 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=17.4
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|++|+|||||++.+.|
T Consensus 10 ~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 10 VLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4689999999999999997
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=82.50 E-value=0.49 Score=43.61 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=18.1
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 32 ~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 32 VVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999984
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=82.25 E-value=0.72 Score=41.33 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3466788999999999999864
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=82.22 E-value=0.79 Score=42.12 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=29.8
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
.+|.++++||.-. +|+.....+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 4578999999765 7887777766666432 12556888888754
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=82.20 E-value=0.47 Score=46.96 Aligned_cols=23 Identities=30% Similarity=0.108 Sum_probs=20.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
.+-+.+|++|+||||++..|++.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45667899999999999999985
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=82.16 E-value=0.42 Score=42.50 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=6.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 12 ~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 12 LLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEECCCCC------------
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 56889999999999999874
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=82.11 E-value=0.67 Score=42.36 Aligned_cols=22 Identities=36% Similarity=0.302 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3466788899999999999864
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=82.01 E-value=0.74 Score=42.19 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=17.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3456778899999999999863
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=81.86 E-value=0.69 Score=43.01 Aligned_cols=21 Identities=38% Similarity=0.363 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-...|+.||||||+.+.|+..
T Consensus 7 I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 356788899999999999864
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=81.72 E-value=0.55 Score=42.82 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 29 ~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 29 VIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999984
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=81.67 E-value=0.69 Score=43.30 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..|+.||||||+.+.|+-.
T Consensus 4 ~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 4 LIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45788899999999999754
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=81.64 E-value=0.58 Score=41.80 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=14.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp EEEEECCC----CHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3456788899999999999864
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=81.59 E-value=0.56 Score=47.82 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+.+|.+|+|||||++.|+|.
T Consensus 5 I~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 5 CGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp EEEECCTTSSHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 367899999999999999983
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=81.59 E-value=0.8 Score=44.03 Aligned_cols=21 Identities=29% Similarity=0.124 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-...|+.||||||+.+.|+..
T Consensus 7 Ivl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 456788999999999999864
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=81.35 E-value=0.87 Score=41.54 Aligned_cols=22 Identities=27% Similarity=0.215 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+..|+.||||||+.+.|+..
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3466788899999999999864
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=81.24 E-value=0.69 Score=42.85 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-..+|++|+|||||++.+++.
T Consensus 41 i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 41 FDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 356689999999999999873
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=80.98 E-value=0.72 Score=42.71 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=16.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..|+.||||||+.+.|+-.
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 4 ILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEESTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 45688899999999999763
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=80.98 E-value=0.63 Score=41.19 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..||.|+|||||++.++..
T Consensus 47 ll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 47 ILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEESCGGGCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999874
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=80.95 E-value=0.84 Score=41.82 Aligned_cols=21 Identities=24% Similarity=0.003 Sum_probs=17.5
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..|+.||||||+.+.|+-.
T Consensus 12 I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 456778899999999999863
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=80.67 E-value=0.62 Score=41.91 Aligned_cols=20 Identities=30% Similarity=0.327 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 22 ~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 22 VVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEECTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999874
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=80.65 E-value=0.72 Score=48.06 Aligned_cols=23 Identities=35% Similarity=0.143 Sum_probs=19.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
.+-..+|++|+||||++..|++.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35566799999999999999994
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=80.21 E-value=0.56 Score=42.04 Aligned_cols=20 Identities=25% Similarity=0.150 Sum_probs=17.4
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 26 ~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 26 LMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEETTSSHHHHHHHTCCS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 56788999999999999764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 531 | ||||
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-12 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-11 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-11 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-11 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-10 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-10 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-10 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-09 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-09 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-09 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 7e-09 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 8e-09 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-08 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 6e-08 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-07 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-07 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-07 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-07 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 7e-06 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-05 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 4e-04 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-04 | |
| d1jwyb_ | 306 | c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc | 0.003 |
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 63.8 bits (155), Expect = 4e-12
Identities = 39/235 (16%), Positives = 81/235 (34%), Gaps = 32/235 (13%)
Query: 4 MTEAAIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLM 63
+++ +E + + + + + I + +P+ G + +L G GAGKTT +
Sbjct: 2 VSDIVLEVQSLHVY-----YGAIHA-IKGI--DLKVPR-GQIVTLIG---ANGAGKTTTL 49
Query: 64 DVLAG--RKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYDFTHCLYMF- 120
+AG R G I N + + P T+Y+
Sbjct: 50 SAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR 109
Query: 121 ---------IEEGMEL-VELNPFRQALFE-----QRKRLTVAVEFVANPSIISRDEPISG 165
+E L L + L +++ L + ++ P ++ DEP G
Sbjct: 110 KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLG 169
Query: 166 LDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220
L + V +++ G T++ + + ++L+ GQ + G
Sbjct: 170 LAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVA-HYGYVLET-GQIVLEGK 222
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 61.5 bits (149), Expect = 1e-11
Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 20/159 (12%)
Query: 54 PGGAGKTTLMDVLAG-RKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYD 112
P G GKTTL+ ++ KP I +G P + + + + I ++ D
Sbjct: 35 PNGIGKTTLLKTISTYLKPLKG---EIIYNGVPITK--VKGKIFFLPEEIIVPRKISVED 89
Query: 113 FTHCLYMF---------IEEGMELVELNPFRQALFE----QRKRLTVAVEFVANPSIISR 159
+ + I + +E VE+ ++ L E +R+ +A + N I
Sbjct: 90 YLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVL 149
Query: 160 DEPISGLDARAATTVIRMVRNTV-DMGRTVVCTIHQPSI 197
D+P+ +D + V++ + + + G ++ + + S
Sbjct: 150 DDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSY 188
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 60.8 bits (147), Expect = 5e-11
Identities = 35/185 (18%), Positives = 72/185 (38%), Gaps = 22/185 (11%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLY 111
P GAGKTT + +++ + G +T + E+ +++ Y + +
Sbjct: 36 PNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGI 93
Query: 112 DFTHCLYMF-----------IEEGMELVELNPFRQALFE-----QRKRLTVAVEFVANPS 155
++ + F +E E+ L + ++L +A + NP
Sbjct: 94 EYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPR 153
Query: 156 IISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215
+ DEP SGLD A V ++++ G T++ + H ++ + D + L+ G
Sbjct: 154 LAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTI 211
Query: 216 ISVGP 220
+ G
Sbjct: 212 VETGT 216
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 60.8 bits (147), Expect = 5e-11
Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 33/198 (16%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLY 111
P G+GK+TL++V+ G + G + E E + + Q T+
Sbjct: 38 PNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVL 97
Query: 112 D---FTHCLYMF---------------------IEEGMELVELNPFRQALFEQ-----RK 142
+ + +E ++L+ + K
Sbjct: 98 ENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMK 157
Query: 143 RLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYS 202
+ + + NP +I DEPI+G+ A + V G T + H+ I + Y
Sbjct: 158 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYI 217
Query: 203 FDELFLLKQVGQEISVGP 220
D L+++ GQ I+ G
Sbjct: 218 -DHLYVMFN-GQIIAEGR 233
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 59.4 bits (144), Expect = 1e-10
Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 26/187 (13%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQ-ETFARILGYCEQNDIHSPHDTL 110
P G GKTT + ++AG G I R + Q+ PH T+
Sbjct: 40 PSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95
Query: 111 YDFTHCLYMF-----------IEEGMELVELNPFRQALFE-----QRKRLTVAVEFVANP 154
Y+ + EL+++ QR+R+ VA V P
Sbjct: 96 YENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEP 155
Query: 155 SIISRDEPISGLDARAATTVIRMVRN-TVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVG 213
++ DEP+S LDA+ + ++ + T + H + D + ++ + G
Sbjct: 156 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG-DRIAVMNR-G 213
Query: 214 QEISVGP 220
Q + +G
Sbjct: 214 QLLQIGS 220
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 58.7 bits (142), Expect = 3e-10
Identities = 36/199 (18%), Positives = 70/199 (35%), Gaps = 34/199 (17%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYIT---RNITVSGYPEKQETFA---------RILGYCE 99
G+GK+T + + + G I +NI + + Q A L
Sbjct: 36 SSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVF 95
Query: 100 QNDIHSPHDTLYDFTHCLYMFI------------EEGMELVELNPF------RQALFEQR 141
Q+ H T+ + + + + + V ++ Q+
Sbjct: 96 QHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQ 155
Query: 142 KRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFY 201
+R+++A P ++ DEP S LD V+R+++ + G+T+V H+
Sbjct: 156 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV 215
Query: 202 SFDELFLLKQVGQEISVGP 220
S + L Q G+ G
Sbjct: 216 S-SHVIFLHQ-GKIEEEGD 232
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 58.0 bits (140), Expect = 4e-10
Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 22/185 (11%)
Query: 54 PGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARI-LGYCEQNDIHSPHDTLYD 112
P G GK+TL+ ++AG + + + A +G Q+ PH ++ +
Sbjct: 34 PSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAE 91
Query: 113 FTHCLYMF-----------IEEGMELVELNPFRQALFE-----QRKRLTVAVEFVANPSI 156
+ + E+++L + QR+R+ + VA PS+
Sbjct: 92 NMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 151
Query: 157 ISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215
DEP+S LDA + + GRT++ H + + D++ +L G+
Sbjct: 152 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLA-DKIVVLDA-GRV 209
Query: 216 ISVGP 220
VG
Sbjct: 210 AQVGK 214
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 56.5 bits (136), Expect = 1e-09
Identities = 30/205 (14%), Positives = 71/205 (34%), Gaps = 26/205 (12%)
Query: 54 PGGAGKTTLMDVLAGRKP--GGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLY 111
P GAGK+TL+ +AG G + + + A Y Q ++
Sbjct: 33 PNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--LALHRAYLSQQQTPPFATPVW 90
Query: 112 DFTHCLYM------FIEEGMELVELNPFRQAL-----FEQRKRLTVAVEFVA-------N 153
+ + + + L+ + +R+ +A +
Sbjct: 91 HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPA 150
Query: 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVG 213
++ DEP++ LD + + +++ G +V + H + + ++ +LLK G
Sbjct: 151 GQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKG-G 208
Query: 214 QEISVGPLGPSSIHLISYFEKIFGV 238
+ ++ G + + +G+
Sbjct: 209 KMLASGR--REEVLTPPNLAQAYGM 231
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.2 bits (138), Expect = 1e-09
Identities = 26/164 (15%), Positives = 48/164 (29%), Gaps = 35/164 (21%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLY 111
G+GKT+L+ ++ G G I SG R+ +C Q P
Sbjct: 70 STGSGKTSLLMLILGELEASEG----IIKHSG---------RV-SFCSQFSWIMPGTIKE 115
Query: 112 DFTHCLYMF---IEEGMELVELNPFRQALFE----------------QRKRLTVAVEFVA 152
+ + + ++ +L E QR R+++A
Sbjct: 116 NIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYK 175
Query: 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196
+ + D P LD V + +T + +
Sbjct: 176 DADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME 219
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 55.6 bits (134), Expect = 2e-09
Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 29/181 (16%)
Query: 43 GDLNSLSGAFRPGGAGKTTLMDVLAG--RKPGGYIT-RNITVSGYPEKQETFARI--LGY 97
G+ S+ G P G+GK+T+++++ + G + NI + + + T R +G+
Sbjct: 31 GEFVSIMG---PSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGF 87
Query: 98 CEQNDIHSPHDTLYD-------FTHCLYMFIEEGMELVELNPFRQALFE----------- 139
Q P T + F + M EE + L E
Sbjct: 88 VFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLS 147
Query: 140 --QRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPS 196
Q++R+ +A NP II D+P LD++ ++++++ + G+TVV H +
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207
Query: 197 I 197
+
Sbjct: 208 V 208
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 54.2 bits (130), Expect = 7e-09
Identities = 51/236 (21%), Positives = 83/236 (35%), Gaps = 36/236 (15%)
Query: 7 AAIEANNHNKRGMVLLFEPHYISLNEIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVL 66
A + + K F + E+ S+++ G+ L G P G GKTT + ++
Sbjct: 2 AGVRLVDVWKV-----FGEVTA-VREM--SLEVKD-GEFMILLG---PSGCGKTTTLRMI 49
Query: 67 AG--RKPGGYITRNITVSGYPEKQE---TFARILGYCEQNDIHSPHDTLYDFTHCLYMF- 120
AG G I + PEK R + Q+ PH T+YD
Sbjct: 50 AGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR 109
Query: 121 ----------IEEGMELVELNPFRQALFE-----QRKRLTVAVEFVANPSIISRDEPISG 165
+ E EL+ L QR+R+ + V P + DEP+S
Sbjct: 110 KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 166 LDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220
LDA+ + ++ G T + H + D + ++ + G VG
Sbjct: 170 LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMG-DRIAVMNR-GVLQQVGS 223
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 54.1 bits (130), Expect = 8e-09
Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 27/168 (16%)
Query: 54 PGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARILGYCEQNDIHSPHDTL 110
G+GK+T+ ++ +I + G+ ++ + + QN
Sbjct: 49 RSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVA 106
Query: 111 YDFTHCLYMF-----IEEGMELVELNPFRQALFE----------------QRKRLTVAVE 149
+ + IEE + F + QR+R+ +A
Sbjct: 107 NNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 166
Query: 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSI 197
+ + I+ DE S LD + + + + RT + H+ S
Sbjct: 167 LLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRLST 213
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 52.6 bits (126), Expect = 2e-08
Identities = 36/199 (18%), Positives = 76/199 (38%), Gaps = 26/199 (13%)
Query: 43 GDLNSLSGAFRPGGAGKTTLMDVLAGRKP---GGYITRNITVSGYPEKQET-FARILGYC 98
G + + G GAGK+TL+ + + G + ++ E + T R +G
Sbjct: 31 GQIYGVIG---ASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMI 87
Query: 99 EQNDIHSPHDTLYD-FTHCLYMF----------IEEGMELVELNPFRQAL-----FEQRK 142
Q+ T++ L + + E + LV L + Q++
Sbjct: 88 FQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQ 147
Query: 143 RLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFY 201
R+ +A +NP ++ DE S LD +++ ++++ G T++ H+ +
Sbjct: 148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRI 207
Query: 202 SFDELFLLKQVGQEISVGP 220
D + ++ G+ I
Sbjct: 208 C-DCVAVISN-GELIEQDT 224
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 51.7 bits (124), Expect = 6e-08
Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 28/167 (16%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYITRN-ITVSGYPEKQETFARILGYCEQNDIHSPHDTL 110
G GK+TL++++ G I + + + + +G Q D DT+
Sbjct: 52 MSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL--TGSLRNQIGLV-QQDNILFSDTV 108
Query: 111 YD-----FTHCLYMFIEEGMELVELNPFRQALFE----------------QRKRLTVAVE 149
+ + E ++ + F L + Q++RL++A
Sbjct: 109 KENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 168
Query: 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196
F+ NP I+ DE S LD + + + + + RT + H+ S
Sbjct: 169 FLNNPPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLS 214
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 50.9 bits (121), Expect = 1e-07
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 23/188 (12%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQET--FARILGYCEQNDIHSPHDT 109
P GAGKTT M ++AG G + + + K R +G Q P+ T
Sbjct: 39 PSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLT 98
Query: 110 LYDFTHCLYMF-----------IEEGMELVELNPF-----RQALFEQRKRLTVAVEFVAN 153
++ +EE ++++++ R+ Q++R+ +A V +
Sbjct: 99 AFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKD 158
Query: 154 PSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQV 212
PS++ DEP S LDAR + +V+ G T++ H P+ DIF D + +L +
Sbjct: 159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK- 216
Query: 213 GQEISVGP 220
G+ + VG
Sbjct: 217 GKLVQVGK 224
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 50.7 bits (121), Expect = 1e-07
Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 28/168 (16%)
Query: 54 PGGAGKTTLMDVLAGRKPGGYITRNITVSGYP---EKQETFARILGYCEQNDIHSPHDTL 110
G+GK+TL ++ + + G+ R +G Q D + ++
Sbjct: 37 RSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSI 93
Query: 111 YDFTHCL-----YMFIEEGMELVELNPFRQALFE----------------QRKRLTVAVE 149
D + +L + F L E QR+R+ +A
Sbjct: 94 IDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARA 153
Query: 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSI 197
V NP I+ DE S LD + ++R + + GRTV+ H+ S
Sbjct: 154 LVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAHRLST 200
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 49.7 bits (118), Expect = 2e-07
Identities = 36/182 (19%), Positives = 66/182 (36%), Gaps = 19/182 (10%)
Query: 54 PGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFAR-ILGYCEQNDIHSPHDTLYD 112
P GAGKT ++++AG I + G + + + + QN PH +
Sbjct: 34 PTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91
Query: 113 FTHCLYMF--------IEEGMELVELNPFR-----QALFEQRKRLTVAVEFVANPSIISR 159
+ + +++ +++R+ +A V NP I+
Sbjct: 92 NLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLL 151
Query: 160 DEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISV 218
DEP+S LD R M+ TV+ H + + D + ++ G+ I V
Sbjct: 152 DEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMA-DRIAVVMD-GKLIQV 209
Query: 219 GP 220
G
Sbjct: 210 GK 211
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 49.1 bits (117), Expect = 3e-07
Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 27/167 (16%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYITRN-ITVSGYPEKQETFARILGYCEQNDIHSPHDTL 110
P G GK+T+ +L + G IT + + E + +G+ Q+
Sbjct: 36 PSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNIS--LENWRSQIGFVSQDSAIMAGTIR 93
Query: 111 YDFTHCL-----YMFIEEGMELVELNPFRQALFE----------------QRKRLTVAVE 149
+ T+ L + + ++L F + + + QR+RL +A
Sbjct: 94 ENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153
Query: 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196
F+ NP I+ DE + LD+ + + V + + + + GRT + H+ S
Sbjct: 154 FLRNPKILMLDEATASLDSESESMVQKALDS-LMKGRTTLVIAHRLS 199
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (107), Expect = 7e-06
Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 27/169 (15%)
Query: 54 PGGAGKTTLMDVLAGRKPGGYITRNITVSGYP---EKQETFARILGYCEQNDIHSPHDTL 110
P G+GK+T+ +L + + G P + R + Q
Sbjct: 48 PNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQ 105
Query: 111 YDFTHCLYM-----FIEEGMELVELNPFRQALFE----------------QRKRLTVAVE 149
+ + L I + F L + QR+ + +A
Sbjct: 106 ENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165
Query: 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSI 197
+ P ++ D+ S LDA + V +++ + + R+V+ S+
Sbjct: 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSL 214
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 42.7 bits (100), Expect = 5e-05
Identities = 39/217 (17%), Positives = 81/217 (37%), Gaps = 35/217 (16%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYIT-RNITVSGYPEKQETFARILGYCEQNDIHSPHDTL 110
P GAGK+ ++++AG + G + ++ P ++ R +G+ Q+ PH ++
Sbjct: 32 PTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFPHLSV 87
Query: 111 YDFTHCLYMF---------IEEGMELVELNPFRQAL-----FEQRKRLTVAVEFVANPSI 156
Y + E E + + +R+R+ +A V P +
Sbjct: 88 YRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL 147
Query: 157 ISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQE 215
+ DEP+S +D + ++ +R ++ H + DE+ ++ G+
Sbjct: 148 LLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLA-DEVAVMLN-GRI 205
Query: 216 ISVGPLGPSSI---------HLISYFEKIFGVSKIKD 243
+ G + +S + VSKI D
Sbjct: 206 VEKGK--LKELFSAKNGEVAEFLSARNLLLKVSKILD 240
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 39.2 bits (90), Expect = 4e-04
Identities = 21/169 (12%), Positives = 36/169 (21%), Gaps = 16/169 (9%)
Query: 54 PGGAGKTTLMDVLAG--RKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLY 111
G GKTTL+ + K + +
Sbjct: 8 EPGVGKTTLVKKIVERLGKRAIG----FWTEEVRDPETKKRTGFRIITTEGKKKI----- 58
Query: 112 DFTHCLYMFIEEGMELVELNPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAA 171
F+ + + + + L +I DE
Sbjct: 59 -FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFS-K 116
Query: 172 TTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGP 220
+ + D VV TI + E+ L I + P
Sbjct: 117 KFRDLVRQIMHDPNVNVVATIPIRDVHPL--VKEIRRLPG-AVLIELTP 162
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Score = 37.5 bits (86), Expect = 0.003
Identities = 39/209 (18%), Positives = 71/209 (33%), Gaps = 29/209 (13%)
Query: 37 VDMPQI---GDLNSLSGAFRPGGAGKTTLMDVLAGRKP----GGYITRNITVSGYPEKQE 89
+D+PQI G +S GK+++++ + GR G +TR +
Sbjct: 22 LDLPQIVVVGSQSS----------GKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPI 71
Query: 90 TFARILGYCEQNDIHSPHDTLYDFTHCLYMFIEEGMELVELNPFRQA---LFEQRKRLTV 146
+H P+D YDF+ I + + N A + V
Sbjct: 72 ADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVV 131
Query: 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDEL 206
+ V P I + RMV + ++ + + D+ + D L
Sbjct: 132 NLTLVDLPGITKVPVG--DQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA-NSDAL 188
Query: 207 FLLKQVGQEISVGPLGPSSIHLISYFEKI 235
L K+ V P G +I +I+ + +
Sbjct: 189 QLAKE------VDPEGKRTIGVITKLDLM 211
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 531 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.98 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.98 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.71 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.33 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.95 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.75 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.37 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.19 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.69 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.42 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.19 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.12 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.92 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.79 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 94.72 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.21 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.19 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.86 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 93.7 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 93.63 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.62 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.33 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.15 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.08 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 92.83 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 92.68 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 92.62 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.47 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.37 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 92.24 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 91.95 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 91.95 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 91.91 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 91.87 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.8 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 91.76 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 91.53 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 91.46 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.41 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 91.35 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 91.34 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 91.17 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 90.99 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 90.95 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 90.88 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 90.84 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 90.65 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 90.63 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 90.51 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 90.32 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 90.13 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 89.98 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.91 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 89.89 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 89.85 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 89.77 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.54 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.25 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 89.07 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 89.02 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 88.93 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 88.9 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.83 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 88.77 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 88.61 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 88.47 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 88.39 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 88.1 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 87.93 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 87.87 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 87.36 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 86.96 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 86.85 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 86.83 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 86.79 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 86.69 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 86.63 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 86.44 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 86.41 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 86.36 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 86.27 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 86.19 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.13 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 86.11 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 86.07 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 85.92 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 85.9 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 85.85 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 85.73 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 85.66 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 85.58 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 85.57 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 85.47 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 85.46 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 85.25 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 85.14 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.0 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 84.51 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 83.98 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 83.83 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 83.68 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 83.67 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 83.46 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 83.22 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 83.02 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 82.83 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 82.69 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 82.34 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 81.87 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 81.8 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 81.76 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 81.75 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 81.49 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 81.35 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 81.33 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 81.31 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 81.16 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 81.08 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.97 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 80.92 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 80.86 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 80.5 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 80.48 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 80.44 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 80.38 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 80.32 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 80.26 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 80.2 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 80.18 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 80.06 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.4e-43 Score=340.71 Aligned_cols=190 Identities=21% Similarity=0.296 Sum_probs=159.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILG 96 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~ig 96 (531)
.|+++||+++|+ +..+|+|||+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.+|
T Consensus 6 ~I~v~nlsk~yg--~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p--~sG~I~i~g~~i~~~~~~~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFG--NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDVTYLPPKDRNIS 81 (239)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCGGGGTEE
T ss_pred eEEEEEEEEEEC--CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCCEEEEcceecccCCcccceEE
Confidence 367777777774 456777777666665 99999999999998664 47999999987643 23456799
Q ss_pred EEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
||+|++.++|++||+|+ +.+.+++++++++.+++++.+++.+ ||||||+|||||+.+|++|+||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllD 161 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD 161 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred EEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeec
Confidence 99999999999999998 4556778999999999999988877 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||+||||.++.++++.|++++++ |+|||++|||++ ++.++|||+++|++ |+++..|+++
T Consensus 162 EPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~~ 222 (239)
T d1v43a3 162 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSPT 222 (239)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999765 999999999987 67889999999996 9999999863
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.1e-43 Score=340.25 Aligned_cols=191 Identities=25% Similarity=0.340 Sum_probs=168.7
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hhh
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ETF 91 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~~ 91 (531)
.|+++||+++|+.++..+|+|||+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p--~~G~I~~~g~~i~~~~~~~~~~~ 80 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLVASNGKLIVPPE 80 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCC--CCceEEECCEEeecCchhhcchh
Confidence 47888999998655567889988888777 99999999999998664 47999999987532 224
Q ss_pred cceEEEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCC
Q 042733 92 ARILGYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPS 155 (531)
Q Consensus 92 ~~~igyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~ 155 (531)
++.+|||+|++.++|++||+|+ ..+.+++++++++.+||++..++.+ ||||||+|||||+++|+
T Consensus 81 rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~ 160 (242)
T d1oxxk2 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPS 160 (242)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhccc
Confidence 5679999999999999999998 3556778999999999999888877 99999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 156 IISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 156 lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
+|||||||+|||+.++.++++.|+++.++ |.|+|++|||++ ++.++|||+++|++ |+++..|++
T Consensus 161 llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~iv~~g~~ 225 (242)
T d1oxxk2 161 LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKP 225 (242)
T ss_dssp EEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred ceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999999999999765 999999999987 57889999999996 999999986
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.7e-43 Score=338.32 Aligned_cols=189 Identities=21% Similarity=0.302 Sum_probs=143.7
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igy 97 (531)
|+++||+++|+ +..+|+|||+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.+||
T Consensus 1 Iev~nv~k~yg--~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p--~sG~I~i~g~~i~~~~~~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWG--EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMNDTPPAERGVGM 76 (232)
T ss_dssp EEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEESSSCCTTSCGGGTCEEE
T ss_pred CEEEEEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCCEEEECCEECCCCchhhceeee
Confidence 57889999995 567899999888777 99999999999998664 47999999988653 234677999
Q ss_pred EecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeC
Q 042733 98 CEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDE 161 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDE 161 (531)
|+|++.+++.+||+|+ ..+.+++++++++.+++.+..++.+ ||||||+|||||+++|++|+|||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDE 156 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 156 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEES
T ss_pred eccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999999999998 2344567899999999999888877 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 162 PISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 162 PtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
||+|||+.++.++++.|+++.+ .|+|||++|||++ ++..+|||+++|++ |+++..|+++
T Consensus 157 Pts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~~ 216 (232)
T d2awna2 157 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 216 (232)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEeCHH
Confidence 9999999999999999999976 5999999999987 68889999999996 9999999863
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.8e-42 Score=335.14 Aligned_cols=189 Identities=22% Similarity=0.279 Sum_probs=164.6
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchh-------h
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQE-------T 90 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~-------~ 90 (531)
.|+++||+++|+ +..+|+|||+.+++| |||||||+|+|+|..++ .+|+|.++|.+.... .
T Consensus 3 ~i~v~nl~k~yg--~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p--~sG~I~~~g~~i~~~~~~~~~~~ 78 (240)
T d1g2912 3 GVRLVDVWKVFG--EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLVADPEKGIFVPP 78 (240)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEEEGGGTEECCG
T ss_pred cEEEEeEEEEEC--CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCCEEEECCEEecccchhhhccc
Confidence 467788888874 456778777777666 99999999999998664 579999999875321 1
Q ss_pred hcceEEEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 91 FARILGYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
.++.+|||+|++.++|.+||+|+ ..+.+++++++++.+++.+..++.+ ||||||+|||||+++|
T Consensus 79 ~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P 158 (240)
T d1g2912 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKP 158 (240)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred ccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 35679999999999999999998 3455678999999999999888876 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
++|+|||||+|||+.++..+++.|+++.++ |.|||++|||++ ++.+.|||+++|++ |+++..|++
T Consensus 159 ~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~iv~~G~~ 224 (240)
T d1g2912 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGSP 224 (240)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999876 999999999987 57889999999996 999999986
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-42 Score=336.47 Aligned_cols=192 Identities=20% Similarity=0.251 Sum_probs=167.9
Q ss_pred EEEEeEEEEEeCCCc--cccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch------hh
Q 042733 28 ISLNEIVYSVDMPQI--GDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ------ET 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~~--~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~------~~ 90 (531)
|+++||+++|+.+.. ++|+|||+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p--~sG~I~~~g~~i~~~~~~~~~~ 79 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELTTLSESELTK 79 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC--SEEEEEETTEEECTTCHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccc--cCCceEEcCeEeeeCChhhhhh
Confidence 688999999875433 5799999888877 99999999999998764 47999999987532 23
Q ss_pred hcceEEEEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCC
Q 042733 91 FARILGYCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANP 154 (531)
Q Consensus 91 ~~~~igyv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p 154 (531)
+|+.+|||+|++.+++.+||+|+ ..+.+++++++++.+||.+..++.+ ||||||+|||||+.+|
T Consensus 80 ~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P 159 (240)
T d3dhwc1 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 159 (240)
T ss_dssp HHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCC
T ss_pred hhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCC
Confidence 45679999999999999999998 2345677899999999998887766 9999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 155 SIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 155 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
++|||||||+|||+.++.++++.|+++.++ |.|||++|||++ ++..+|||+++|++ |++++.|++++
T Consensus 160 ~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv~~G~~~e 227 (240)
T d3dhwc1 160 KVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQDTVSE 227 (240)
T ss_dssp SEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEEEEEETTT
T ss_pred CeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEECCHHH
Confidence 999999999999999999999999999876 999999999987 57789999999996 99999999853
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.3e-42 Score=333.49 Aligned_cols=188 Identities=21% Similarity=0.241 Sum_probs=161.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGY 97 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igy 97 (531)
|+++|||++|+ ..+|+|||+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.+||
T Consensus 2 i~v~nlsk~y~---~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p--~sG~I~~~G~~i~~~~~~~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWK---NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVTDLSPEKHDIAF 76 (229)
T ss_dssp EEEEEEEEECS---SCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECTTSCHHHHTCEE
T ss_pred EEEEEEEEEeC---CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCCEEEEccEeccccchhHhccee
Confidence 56777777774 24677777666665 99999999999998654 48999999988653 234567999
Q ss_pred EecCCCCCCCCcHHhHHH--------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCC
Q 042733 98 CEQNDIHSPHDTLYDFTH--------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPIS 164 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~--------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPts 164 (531)
|+|++.++|++||+|+.. ...++++++++.+++.+..++.+ ||||||+|||||+++|++|+|||||+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts 156 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred eccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCc
Confidence 999999999999999821 12356888999999999888876 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 165 GLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 165 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||+.++.++++.|+++.++ |.|||++|||++ ++.++|||+++|++ |+++..|+++
T Consensus 157 ~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~~ 213 (229)
T d3d31a2 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKPE 213 (229)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999764 999999999987 68889999999996 9999999863
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.1e-41 Score=325.88 Aligned_cols=189 Identities=20% Similarity=0.299 Sum_probs=159.5
Q ss_pred EEEEeEEEEEeCCCc--cccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---h---h
Q 042733 28 ISLNEIVYSVDMPQI--GDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---E---T 90 (531)
Q Consensus 28 l~~~~ls~~~~~~~~--~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~---~ 90 (531)
|+++||+++|+.+++ .+|+|||+.+.+| |||||||||+|+|..++ .+|+|.++|.+... . .
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p--~sG~I~~~g~~i~~~~~~~~~~ 79 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTNDLDDDELTK 79 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCC--CcceeEECCEEcCcCChhhcch
Confidence 688899988875443 4788888888777 99999999999998653 47999999987532 1 1
Q ss_pred -hcceEEEEecCCCCCCCCcHHhH--------------HHHHHHHHHHHHHhcCCch-hhhccH-----HHHHHHHHHHH
Q 042733 91 -FARILGYCEQNDIHSPHDTLYDF--------------THCLYMFIEEGMELVELNP-FRQALF-----EQRKRLTVAVE 149 (531)
Q Consensus 91 -~~~~igyv~Q~~~~~~~ltv~e~--------------~~~~~~~~~~~l~~l~l~~-~~~~~~-----GerqRv~iA~a 149 (531)
.++.+|||+|++.++|.+||+|+ ..+..+++.+.++.+++.+ ..++.+ ||||||+||||
T Consensus 80 ~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAra 159 (230)
T d1l2ta_ 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA 159 (230)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred hhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhh
Confidence 23569999999999999999997 2344566788899999965 455544 99999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 150 FVANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 150 L~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
|+++|++|+|||||+|||+.++.++++.|+++.++ |+|||++|||++ +.+.|||+++|++ |+++..|++
T Consensus 160 L~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~Iv~~g~~ 229 (230)
T d1l2ta_ 160 LANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GEVEREEKL 229 (230)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEEC
T ss_pred hhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH--HHHhCCEEEEEEC-CEEEEeccC
Confidence 99999999999999999999999999999999875 999999999975 3478999999996 999998864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.4e-41 Score=327.19 Aligned_cols=189 Identities=19% Similarity=0.304 Sum_probs=166.2
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch--hhhcceEE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ--ETFARILG 96 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~--~~~~~~ig 96 (531)
|+++||+++|+ ++++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ...++.+|
T Consensus 3 I~v~nl~k~yg--~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p--~~G~i~i~G~~i~~~~~~~~~~i~ 78 (238)
T d1vpla_ 3 VVVKDLRKRIG--KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNVVEEPHEVRKLIS 78 (238)
T ss_dssp EEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEETTTCHHHHHTTEE
T ss_pred EEEEeEEEEEC--CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECcEecccChHHHHhhEe
Confidence 67888988884 567888888777766 99999999999998664 47999999987532 34577899
Q ss_pred EEecCCCCCCCCcHHhH-----------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEe
Q 042733 97 YCEQNDIHSPHDTLYDF-----------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRD 160 (531)
Q Consensus 97 yv~Q~~~~~~~ltv~e~-----------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLD 160 (531)
|+||++.+++++|+.|+ ..+..+.++..++.+++.+..++.+ |||||++|||||+++|++|+||
T Consensus 79 ~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLD 158 (238)
T d1vpla_ 79 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD 158 (238)
T ss_dssp EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 99999999999999998 2344566788899999988877776 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 161 EPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 161 EPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|||+|||+.++.++++++++++++|+|||++||+++ ++..+|||+++|++ |++++.|+++
T Consensus 159 EPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~~ 218 (238)
T d1vpla_ 159 EPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTVE 218 (238)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999989999999999987 68889999999996 9999999874
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=7.3e-41 Score=325.47 Aligned_cols=192 Identities=17% Similarity=0.207 Sum_probs=156.1
Q ss_pred eEEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hc
Q 042733 26 HYISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FA 92 (531)
Q Consensus 26 ~~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~ 92 (531)
+.|+++||+++|+ +..+|+|||+.+++| |||||||+|+|+|..++ .+|+|.++|.+... .. .+
T Consensus 5 ~~Lev~~l~k~yg--~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~~~r 80 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG--AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp EEEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHH
T ss_pred eEEEEeeEEEEEC--CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEecccccccccHHHHHH
Confidence 4567777777773 456677777666555 99999999999998664 47999999987642 11 23
Q ss_pred ceEEEEecCCCCCCCCcHHhHH----------HHHHHHHHHHHHhc-CCchhhhccH-----HHHHHHHHHHHHhhCCCe
Q 042733 93 RILGYCEQNDIHSPHDTLYDFT----------HCLYMFIEEGMELV-ELNPFRQALF-----EQRKRLTVAVEFVANPSI 156 (531)
Q Consensus 93 ~~igyv~Q~~~~~~~ltv~e~~----------~~~~~~~~~~l~~l-~l~~~~~~~~-----GerqRv~iA~aL~~~p~l 156 (531)
..++|++|+..+++.+||+|+. ....+.++++++.+ ++.+..++.+ ||||||+|||||+++|++
T Consensus 81 ~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~l 160 (240)
T d1ji0a_ 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL 160 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred hcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 4589999999999999999981 12233455555555 5666655544 999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
|+|||||+||||.++.++++.+++++++|+|||++||+++ ++.++|||+++|++ |++++.|++++
T Consensus 161 LllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~~e 225 (240)
T d1ji0a_ 161 LMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGKASE 225 (240)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEEHHH
T ss_pred eeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHH
Confidence 9999999999999999999999999988999999999987 68889999999996 99999998753
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.5e-40 Score=324.60 Aligned_cols=189 Identities=20% Similarity=0.199 Sum_probs=164.1
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch----------
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---------- 88 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---------- 88 (531)
|+++||+++|+ +.++|+|||+.+.+| |||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 3 Lev~nl~k~yg--~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 3 LHVIDLHKRYG--GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp EEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEC--CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccC--CCCCEEECCEEeccCCccchhccc
Confidence 78899999984 567899999888877 99999999999998764 47999999986521
Q ss_pred ------hhhcceEEEEecCCCCCCCCcHHhH------------HHHHHHHHHHHHHhcCCchh-hhccH-----HHHHHH
Q 042733 89 ------ETFARILGYCEQNDIHSPHDTLYDF------------THCLYMFIEEGMELVELNPF-RQALF-----EQRKRL 144 (531)
Q Consensus 89 ------~~~~~~igyv~Q~~~~~~~ltv~e~------------~~~~~~~~~~~l~~l~l~~~-~~~~~-----GerqRv 144 (531)
...++.+|||+|++.+++.+||.|+ ..+..+++.+.++.+++.+. .++.+ ||||||
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv 158 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRV 158 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHH
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHH
Confidence 1345779999999999999999987 23445678899999999764 34443 999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||+.+|++|||||||+|||+.++.+++++|++++++|+|||++|||++ ++..+|||+++|++ |++++.|+++
T Consensus 159 ~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~vm~~-G~iv~~g~~~ 234 (258)
T d1b0ua_ 159 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDPE 234 (258)
T ss_dssp HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999999999999999999989999999999987 57889999999996 9999999874
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.9e-40 Score=319.85 Aligned_cols=179 Identities=18% Similarity=0.275 Sum_probs=158.7
Q ss_pred eEEEEEeCCCccccccEEEEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccch-hhhcceEEEEecCCCCCCCCcH
Q 042733 32 EIVYSVDMPQIGDLNSLSGAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ-ETFARILGYCEQNDIHSPHDTL 110 (531)
Q Consensus 32 ~ls~~~~~~~~~iL~~vs~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~-~~~~~~igyv~Q~~~~~~~ltv 110 (531)
|+++..+ +++.+.+||||||||||+|+|+|..++ .+|+|.++|.+... ...++.+|||+|++.++|++||
T Consensus 17 ~vs~~~~-------~e~~~liGpnGaGKSTll~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV 87 (240)
T d2onka1 17 NVDFEMG-------RDYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSV 87 (240)
T ss_dssp EEEEEEC-------SSEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCH
T ss_pred EEEEEeC-------CEEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECCcCCHHHcCceeeccchhhcccchh
Confidence 5666653 257788999999999999999998764 48999999987643 2346789999999999999999
Q ss_pred HhH---------HHHHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 042733 111 YDF---------THCLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR 176 (531)
Q Consensus 111 ~e~---------~~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~ 176 (531)
+|+ ..+.+++++++++.+|+.+..++.+ ||||||+|||||+++|++|+|||||+|||+.++..+++
T Consensus 88 ~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~ 167 (240)
T d2onka1 88 YRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME 167 (240)
T ss_dssp HHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHH
T ss_pred hHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHH
Confidence 998 3455678999999999999888877 99999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCC
Q 042733 177 MVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPL 221 (531)
Q Consensus 177 ~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~ 221 (531)
.+++++++ |.|||++|||++ ++.++|||+++|++ |+++..|++
T Consensus 168 ~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 168 ELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEecH
Confidence 99999875 999999999987 68889999999996 999999986
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.9e-40 Score=323.28 Aligned_cols=190 Identities=19% Similarity=0.223 Sum_probs=159.3
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hh-hcc
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ET-FAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~-~~~ 93 (531)
.|+++||+++|+ +.++|+|||+.+++| |||||||+|+|+|..++ .+|+|.++|.+... .. .++
T Consensus 4 iL~v~nlsk~yg--~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~ 79 (254)
T d1g6ha_ 4 ILRTENIVKYFG--EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDITNKEPAELYHY 79 (254)
T ss_dssp EEEEEEEEEEET--TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHHH
T ss_pred eEEEEEEEEEEC--CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcC--CCcEEEECCEeccchhHHHHHHh
Confidence 356667766663 345666666555554 99999999999998664 47999999987642 22 344
Q ss_pred eEEEEecCCCCCCCCcHHhHH------------------------HHHHHHHHHHHHhcCCchhhhccH-----HHHHHH
Q 042733 94 ILGYCEQNDIHSPHDTLYDFT------------------------HCLYMFIEEGMELVELNPFRQALF-----EQRKRL 144 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~------------------------~~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv 144 (531)
.++|++|++.+++.+||.|+. ....+++.++++.+++.+..++.+ ||||||
T Consensus 80 gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv 159 (254)
T d1g6ha_ 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLV 159 (254)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred cCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHH
Confidence 599999999999999999972 122356778889999988877765 999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 145 TVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 145 ~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|||||+++|++|+|||||+|||+.++.++++.|++++++|+|||++|||++ ++.++||||++|++ |++++.|+++
T Consensus 160 ~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 160 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRGE 235 (254)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEESH
T ss_pred HHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CEEEEEecHH
Confidence 9999999999999999999999999999999999999888999999999998 68899999999996 9999999874
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-39 Score=315.95 Aligned_cols=189 Identities=20% Similarity=0.264 Sum_probs=152.7
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccc---hhhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEK---QETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~---~~~~~~~ 94 (531)
.|+++||||+|+..++.+|+|||+.+.+| |||||||+|+|+|..++ .+|+|.++|.+.. ...+++.
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~~~~~~~lr~~ 78 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDLALADPNWLRRQ 78 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEETTTSCHHHHHHH
T ss_pred CeEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC--CCCEEEECCEEecccchhhhhce
Confidence 47999999999766677999999999988 99999999999998764 4799999998764 3457888
Q ss_pred EEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCch-------h---------hhccHHHHHHHHHHHHHhhC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNP-------F---------RQALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~-------~---------~~~~~GerqRv~iA~aL~~~ 153 (531)
+|||+|++.++ ..|++|+.. ...+.+.+.++..++.+ - .+.+.||||||+|||||+.+
T Consensus 79 i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~ 157 (241)
T d2pmka1 79 VGVVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 157 (241)
T ss_dssp EEEECSSCCCT-TSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEecccccC-CccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcc
Confidence 99999998776 579999810 11112222222222211 1 12333999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++|+||||||+||+.+++.+++.|+++.+ |+|+|++||+++ ....||+|++|++ |+++..|+++
T Consensus 158 p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~~-G~Iv~~G~~~ 222 (241)
T d2pmka1 158 PKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQGKHK 222 (241)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEET-TEEEEEECHH
T ss_pred cchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999864 899999999986 3467999999986 9999999963
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=4.1e-39 Score=313.46 Aligned_cols=187 Identities=22% Similarity=0.324 Sum_probs=150.7
Q ss_pred EEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcceE
Q 042733 28 ISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARIL 95 (531)
Q Consensus 28 l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~i 95 (531)
|+++||||+|+. ++.+|+|||+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++.+
T Consensus 2 le~knvsf~Y~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~~~~~~~~r~~i 78 (242)
T d1mv5a_ 2 LSARHVDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPIDNISLENWRSQI 78 (242)
T ss_dssp EEEEEEEECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEESTTTSCSCCTTTC
T ss_pred EEEEEEEEECCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCC--CCCEEEECCEEeccccHHHHHhhe
Confidence 799999999963 457999999999988 99999999999998654 36899999987643 3467889
Q ss_pred EEEecCCCCCCCCcHHhHHH------HHHHHHHHHHHhcCCch-------hhh---------ccHHHHHHHHHHHHHhhC
Q 042733 96 GYCEQNDIHSPHDTLYDFTH------CLYMFIEEGMELVELNP-------FRQ---------ALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 96 gyv~Q~~~~~~~ltv~e~~~------~~~~~~~~~l~~l~l~~-------~~~---------~~~GerqRv~iA~aL~~~ 153 (531)
|||+|++.+++. |++|+.. .....+.+.++..++.. ..+ .+.||||||+|||||+++
T Consensus 79 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~ 157 (242)
T d1mv5a_ 79 GFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (242)
T ss_dssp CEECCSSCCCCE-EHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEccccccCCc-chhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999988765 9999810 01122233333322221 112 234999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|+||+||||||+||+.++..+++.|++++ +|+|||++||+++ ....||||++|++ |++++.|+++
T Consensus 158 p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G~iv~~G~~~ 222 (242)
T d1mv5a_ 158 PKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGKHN 222 (242)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-TEECCCSCHH
T ss_pred CCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999999999999986 4899999999986 3456999999996 9999999974
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.8e-38 Score=308.19 Aligned_cols=190 Identities=18% Similarity=0.226 Sum_probs=152.4
Q ss_pred EEEEEeEEEEEeCC-CccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcc
Q 042733 27 YISLNEIVYSVDMP-QIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFAR 93 (531)
Q Consensus 27 ~l~~~~ls~~~~~~-~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~ 93 (531)
.|+++||+|+|+.. +..+|+|||+.+++| |||||||+|+|+|..++ .+|+|.++|.+... ..+++
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p--~~G~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP--TGGQLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEGGGBCHHHHHH
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC--CcCEEEECCEecchhhhHHHHH
Confidence 48999999999743 346999999999988 99999999999998764 47999999987643 45678
Q ss_pred eEEEEecCCCCCCCCcHHhHH----------HHH-----HHHHHHHHHhc--CCchhh-----hccHHHHHHHHHHHHHh
Q 042733 94 ILGYCEQNDIHSPHDTLYDFT----------HCL-----YMFIEEGMELV--ELNPFR-----QALFEQRKRLTVAVEFV 151 (531)
Q Consensus 94 ~igyv~Q~~~~~~~ltv~e~~----------~~~-----~~~~~~~l~~l--~l~~~~-----~~~~GerqRv~iA~aL~ 151 (531)
.++||+|++.+++ .|++|+. ... .....+.++.+ +++... +.+.||||||+|||||+
T Consensus 89 ~i~~v~Q~~~lf~-~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 89 QVAAVGQEPQVFG-RSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HEEEECSSCCCCS-SBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HhhhccccccccC-cchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccc
Confidence 8999999998774 6999871 111 11112233333 222221 23349999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++|++|+||||||+||+.++.++++.|+++.++ |+|+|++||+++ ..+.||||++|++ |+++..|+++
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~-G~iv~~Gt~~ 236 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEG-GAIREGGTHQ 236 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEET-TEEEEEECHH
T ss_pred cCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999998764 899999999975 3567999999996 9999999974
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.7e-38 Score=306.80 Aligned_cols=189 Identities=18% Similarity=0.228 Sum_probs=153.9
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.|+++||+|+|+..+.++|+|||+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+++.
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~~~~~~~~r~~ 90 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDLREYTLASLRNQ 90 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEETTTBCHHHHHHT
T ss_pred EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCC--CccEEEECCcccchhhhhhhhhe
Confidence 58999999999866668999999999988 99999999999998764 47999999987643 457788
Q ss_pred EEEEecCCCCCCCCcHHhHHH------HHHHHHHHHHHhcCCchhh----------------hccHHHHHHHHHHHHHhh
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH------CLYMFIEEGMELVELNPFR----------------QALFEQRKRLTVAVEFVA 152 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~------~~~~~~~~~l~~l~l~~~~----------------~~~~GerqRv~iA~aL~~ 152 (531)
++|++|++.++. .|++++.. ...+.+.++++..++.+.. +.+.||||||+|||||++
T Consensus 91 i~~v~Q~~~l~~-~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 91 VALVSQNVHLFN-DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp EEEECSSCCCCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEeeccccCC-cchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 999999987764 57777621 1122344444444433221 223499999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
+|++|+||||||+||+.++..+++.|+++.+ ++|+|++||+++ ....||+|++|++ |+++..|+++
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~~-G~Iv~~G~~~ 235 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVED-GIIVERGTHS 235 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEET-TEEEEEECHH
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999999864 899999999986 3467999999996 9999999974
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=6.9e-38 Score=306.42 Aligned_cols=189 Identities=20% Similarity=0.307 Sum_probs=156.5
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.|+++||+|+|+...+++|+|||+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... ..+|+.
T Consensus 16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~~~~~~~lr~~ 93 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHNIKDFLTGSLRNQ 93 (255)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEEGGGSCHHHHHHT
T ss_pred EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCc--cccccccCCEEcccCCHHHhhhe
Confidence 58999999999866678999999999998 99999999999998764 47999999987643 457888
Q ss_pred EEEEecCCCCCCCCcHHhHHH-----HHHHHHHHHHHhcCCchhh----------------hccHHHHHHHHHHHHHhhC
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH-----CLYMFIEEGMELVELNPFR----------------QALFEQRKRLTVAVEFVAN 153 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~-----~~~~~~~~~l~~l~l~~~~----------------~~~~GerqRv~iA~aL~~~ 153 (531)
++||+|++.++ ..|++|+.. ...+.+.++++..++.+.. +.+.|||||++|||||+++
T Consensus 94 i~~v~Q~~~lf-~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~ 172 (255)
T d2hyda1 94 IGLVQQDNILF-SDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 172 (255)
T ss_dssp EEEECSSCCCC-SSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred eeeeeccccCC-CCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence 99999998776 579999821 1123344555555543321 1233999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 154 PSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 154 p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
|++|+||||||+||+.++..+++.|+++.+ ++|+|++||+++ ....||+|++|++ |+++..|+++
T Consensus 173 p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~--~~~~~D~ii~l~~-G~iv~~G~~~ 237 (255)
T d2hyda1 173 PPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIEN-GHIVETGTHR 237 (255)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG--GTTTCSEEEEEET-TEEEEEECHH
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999998864 899999999986 3467999999986 9999999974
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-35 Score=284.95 Aligned_cols=186 Identities=20% Similarity=0.315 Sum_probs=153.1
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccch---hhhcce
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQ---ETFARI 94 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~---~~~~~~ 94 (531)
.++++|++++ .+|++||+.+.+| |||||||+|+|+|..+ .+|+|.++|.+... ...+..
T Consensus 3 il~~~dv~~~------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~ 73 (231)
T d1l7vc_ 3 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALH 73 (231)
T ss_dssp EEEEEEECCT------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHH
T ss_pred EEEEECcccC------ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CceEEEECCEECCcCCHHHHHhh
Confidence 4667776532 3577777766655 9999999999999764 25899999987543 234556
Q ss_pred EEEEecCCCCCCCCcHHhHHH------HHHHHHHHHHHhcCCchhhhccH-----HHHHHHHHHHHHhh-------CCCe
Q 042733 95 LGYCEQNDIHSPHDTLYDFTH------CLYMFIEEGMELVELNPFRQALF-----EQRKRLTVAVEFVA-------NPSI 156 (531)
Q Consensus 95 igyv~Q~~~~~~~ltv~e~~~------~~~~~~~~~l~~l~l~~~~~~~~-----GerqRv~iA~aL~~-------~p~l 156 (531)
.+|++|+.......++.++.. ...+.++++++.+++.+..++.+ ||||||+||++|++ +|++
T Consensus 74 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~l 153 (231)
T d1l7vc_ 74 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL 153 (231)
T ss_dssp EEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred ceeeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCE
Confidence 899999887777788887621 22456788889999988777665 99999999999997 7799
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCC
Q 042733 157 ISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGP 223 (531)
Q Consensus 157 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~ 223 (531)
|+|||||+|||+.++..+.+++++++++|+|||++|||++ ++.+.|||+++|++ |++++.|++++
T Consensus 154 lllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~-G~iv~~G~~~e 218 (231)
T d1l7vc_ 154 LLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRREE 218 (231)
T ss_dssp EEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEET-TEECCCSBHHH
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEECCHHH
Confidence 9999999999999999999999999989999999999987 58899999999996 99999998743
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.98 E-value=8e-33 Score=261.72 Aligned_cols=173 Identities=17% Similarity=0.242 Sum_probs=136.8
Q ss_pred EEEEEeEEEEEeCCCccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEE
Q 042733 27 YISLNEIVYSVDMPQIGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGY 97 (531)
Q Consensus 27 ~l~~~~ls~~~~~~~~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igy 97 (531)
.|+++|||++|+ +++|+|+|+.+.+| |||||||+|+|+|..++ .+|+|.++|.+... .++.++|
T Consensus 2 ~lev~~ls~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p--~~G~I~~~g~~i~~--~~~~i~~ 74 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPITK--VKGKIFF 74 (200)
T ss_dssp EEEEEEEEEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEGGG--GGGGEEE
T ss_pred eEEEEEEEEEeC---CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccccc--CCCEEEECCEehhH--hcCcEEE
Confidence 368889988884 46888888877766 99999999999997664 57999999988643 5677999
Q ss_pred EecCCCCCCCCcHHhHHHH---------HHHHHHHHHHhcCCchhh----hccHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 042733 98 CEQNDIHSPHDTLYDFTHC---------LYMFIEEGMELVELNPFR----QALFEQRKRLTVAVEFVANPSIISRDEPIS 164 (531)
Q Consensus 98 v~Q~~~~~~~ltv~e~~~~---------~~~~~~~~l~~l~l~~~~----~~~~GerqRv~iA~aL~~~p~lllLDEPts 164 (531)
++|+..++..+|++++... .+..+.+.++.+++.+.. +.+.||||||+|||+|+.+|++++|||||+
T Consensus 75 ~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~ 154 (200)
T d1sgwa_ 75 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVV 154 (200)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTT
T ss_pred EeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 9999999999999987221 123455667776654432 233499999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCeEEEEecCCchHHHhccCeEEEEcc
Q 042733 165 GLDARAATTVIRMVRNTVDM-GRTVVCTIHQPSIDIFYSFDELFLLKQ 211 (531)
Q Consensus 165 gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~~~~~i~~~~d~v~lL~~ 211 (531)
|||+.+++++++.|+++.++ |.+||.++|+. ..||++..|.+
T Consensus 155 gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 155 AIDEDSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp TSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhhheee
Confidence 99999999999999998775 44444444442 46999998864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.98 E-value=6.6e-34 Score=282.40 Aligned_cols=165 Identities=18% Similarity=0.215 Sum_probs=127.1
Q ss_pred ccccccEEEEEcCC---------CchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecCCCCCCCCcHHh
Q 042733 42 IGDLNSLSGAFRPG---------GAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQNDIHSPHDTLYD 112 (531)
Q Consensus 42 ~~iL~~vs~~i~~g---------GaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~~~~~~~ltv~e 112 (531)
+++|+|||+.+.+| |||||||+|+|+|..++ .+|.|.++| +++|++|++.+++ .|++|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g----------~i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSG----------RVSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEECCS----------CEEEECSSCCCCS-EEHHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcC--CCcEEEECC----------EEEEEeccccccC-ceeec
Confidence 46788888777776 99999999999998764 479999887 3899999988776 59999
Q ss_pred HHHH----HHHHHHHHHHhcC-------Cchhhh---------ccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 042733 113 FTHC----LYMFIEEGMELVE-------LNPFRQ---------ALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAAT 172 (531)
Q Consensus 113 ~~~~----~~~~~~~~l~~l~-------l~~~~~---------~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~ 172 (531)
+... .....+++++..+ +.+..+ .+.||||||+|||||+++|+||+|||||+|||+.++.
T Consensus 116 ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~ 195 (281)
T d1r0wa_ 116 NIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEE 195 (281)
T ss_dssp HHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHH
T ss_pred cccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHH
Confidence 8210 0111222222222 211112 3449999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCC
Q 042733 173 TVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLG 222 (531)
Q Consensus 173 ~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~ 222 (531)
++++.+.....+++|+|++||+++ ....||||++|++ |++++.|+++
T Consensus 196 ~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl~~-G~i~~~Gt~~ 242 (281)
T d1r0wa_ 196 QVFESCVCKLMANKTRILVTSKME--HLRKADKILILHQ-GSSYFYGTFS 242 (281)
T ss_dssp HHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHHHhhCCCEEEEEechHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 998865444446899999999974 4578999999996 9999999974
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.33 E-value=2.9e-13 Score=122.67 Aligned_cols=153 Identities=14% Similarity=0.011 Sum_probs=89.9
Q ss_pred EEEcCCCchHHHHHHHHhCCCCCceEEEEEEEcCcccchhhhcceEEEEecC--CC--CCCCCcHHhHHHHHHHHHHHHH
Q 042733 50 GAFRPGGAGKTTLMDVLAGRKPGGYITRNITVSGYPEKQETFARILGYCEQN--DI--HSPHDTLYDFTHCLYMFIEEGM 125 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~~~g~~~G~i~~~g~~~~~~~~~~~igyv~Q~--~~--~~~~ltv~e~~~~~~~~~~~~l 125 (531)
+..||+|||||||+|+|+|..+. ..|.+...+.+...... +.++.... .. .....+..+.. ..
T Consensus 4 ~I~G~~G~GKSTLl~~i~~~l~~--~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 70 (178)
T d1ye8a1 4 IITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKK--RTGFRIITTEGKKKIFSSKFFTSKK---------LV 70 (178)
T ss_dssp EEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC--------CCEEEEEETTCCEEEEEETTCCCSS---------EE
T ss_pred EEECCCCcHHHHHHHHHHhcCCC--CcceEEECCcchHHHHH--hhhhhhhhhhHHHHHHhhhhhhhhh---------hh
Confidence 56899999999999999996543 24666665543221111 11221110 00 00000000000 00
Q ss_pred HhcCC-chhhhccHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEecCCchHHHhcc
Q 042733 126 ELVEL-NPFRQALFEQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVD-MGRTVVCTIHQPSIDIFYSF 203 (531)
Q Consensus 126 ~~l~l-~~~~~~~~GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~~~~i~~~~ 203 (531)
+..+. .+..+...|+++|.++++++..+|+++++|||... ......+.+.+.++.+ .+.++|+++|+.. ....+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~~~~~il~~~h~~~--~~~~~ 146 (178)
T d1ye8a1 71 GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHDPNVNVVATIPIRD--VHPLV 146 (178)
T ss_dssp TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTCTTSEEEEECCSSC--CSHHH
T ss_pred hhhhcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCcc--chhhHHHHHHHHHHhccCCCEEEEEEccHH--HHHhh
Confidence 00010 11122334899999999999999999999998443 3344566666666555 4889999999865 35578
Q ss_pred CeEEEEccCceeeecCC
Q 042733 204 DELFLLKQVGQEISVGP 220 (531)
Q Consensus 204 d~v~lL~~~G~~v~~G~ 220 (531)
|++..+.+ |+++.-++
T Consensus 147 ~~i~~~~~-~~i~~v~~ 162 (178)
T d1ye8a1 147 KEIRRLPG-AVLIELTP 162 (178)
T ss_dssp HHHHTCTT-CEEEECCT
T ss_pred ceEEEEeC-CEEEEECC
Confidence 88888875 88876654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.75 E-value=2.5e-08 Score=97.44 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEc
Q 042733 139 EQRKRLTVAVEF----VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLK 210 (531)
Q Consensus 139 GerqRv~iA~aL----~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~ 210 (531)
|||+...++..+ ..+|+++++|||-++|||..++.+.+.|++..+ +.-||+|||.|. +.+.+|++..+.
T Consensus 223 g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~v~ 295 (308)
T d1e69a_ 223 GEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHGVT 295 (308)
T ss_dssp HHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEEEE
T ss_pred HHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEEEE
Confidence 899988777654 356789999999999999999999999998864 577999999986 578889886643
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=3.3e-07 Score=92.81 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=59.2
Q ss_pred cHHHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEE
Q 042733 137 LFEQRKRLTVAVEF----VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLL 209 (531)
Q Consensus 137 ~~GerqRv~iA~aL----~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL 209 (531)
+.|||.++++|..+ ..++++++||||+++||+..+..+.+.|++++..+.-+|++||+|. +.+.+|+.+.+
T Consensus 334 SgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~~~~V 408 (427)
T d1w1wa_ 334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGV 408 (427)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEE
T ss_pred ccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH--HHHhcccEEEE
Confidence 34899998877654 3577899999999999999999999999988655566999999975 68889997755
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.69 E-value=6.5e-05 Score=69.79 Aligned_cols=58 Identities=9% Similarity=0.082 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCeEEEEecCCc
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR-MVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tvi~~~H~~~ 196 (531)
.|-+|+.-...-+.+..++++||+.+|=|+.....+.. .++.+.+.+..++++||..+
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~e 158 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFE 158 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred HhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechh
Confidence 35555555555567778999999999999988877655 55667777889999999853
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=0.00015 Score=67.81 Aligned_cols=58 Identities=10% Similarity=0.025 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHHc-CCeEEEEecCCc
Q 042733 139 EQRKRLTVAVEFVANPSIISRDEPISGLDARAATTVIR-MVRNTVDM-GRTVVCTIHQPS 196 (531)
Q Consensus 139 GerqRv~iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~-~L~~l~~~-g~tvi~~~H~~~ 196 (531)
.|.+|++-...-+.+..++++||+.+|=|+.....+.. .++.+..+ +..++++||...
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence 45555555555567778999999999999999888765 46677654 567899999754
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.018 Score=53.54 Aligned_cols=45 Identities=13% Similarity=0.088 Sum_probs=33.6
Q ss_pred HhhCCCeEEEeCCCC-----CCCHHHHHHHHHHHHHHHHc-CCeEEEEecC
Q 042733 150 FVANPSIISRDEPIS-----GLDARAATTVIRMVRNTVDM-GRTVVCTIHQ 194 (531)
Q Consensus 150 L~~~p~lllLDEPts-----gLD~~~~~~i~~~L~~l~~~-g~tvi~~~H~ 194 (531)
-..+|+++++|--++ --|......+++.|+.+++. |.+||++.|-
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 457999999996542 12666677888888888764 8898888774
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.0062 Score=51.99 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
|-+..|+.|||||||++.|+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5678899999999999999863
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.79 E-value=0.049 Score=52.45 Aligned_cols=51 Identities=22% Similarity=0.103 Sum_probs=32.0
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEecCCchHHHhccCeEE
Q 042733 147 AVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMG-RTVVCTIHQPSIDIFYSFDELF 207 (531)
Q Consensus 147 A~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tvi~~~H~~~~~i~~~~d~v~ 207 (531)
-.+|=++|+.++++|--. +.+. +.++.+ ..| ..++.|.|-.+ ..+..+|+.
T Consensus 229 ~~~lR~~pd~iivgEiR~---~ea~----~~l~a~-~tGh~g~~tT~Ha~s--~~~a~~Rl~ 280 (323)
T d1g6oa_ 229 KSCLRMRPDRIILGELRS---SEAY----DFYNVL-CSGHKGTLTTLHAGS--SEEAFIRLA 280 (323)
T ss_dssp HHHTTSCCSEEEESCCCS---THHH----HHHHHH-HTTCSCEEEEECCSS--HHHHHHHHH
T ss_pred HHHhccCCCcccCCccCc---hhHH----HHHHHH-HhcCCcEEEEECCCC--HHHHHHHHH
Confidence 345668999999999974 2322 334333 345 45899999765 344455543
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=94.72 E-value=0.0014 Score=57.61 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G 68 (531)
++++..+|||||||||+|++|.-
T Consensus 24 ~~~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 24 ELVTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp HHHHHHHSCCSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45788889999999999999964
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.21 E-value=0.045 Score=50.58 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=18.6
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+..||.|+|||+|.|+|+...
T Consensus 46 Ll~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 46 LLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEECCTTSSHHHHHHHHHHHT
T ss_pred EEecCCCCChhHHHHHHHHHc
Confidence 678899999999999999854
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.19 E-value=0.06 Score=49.97 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..||.|+|||+|.+.|+..
T Consensus 49 LL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 49 LMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EeeCCCCCCccHHHHHHHHH
Confidence 56789999999999999974
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.86 E-value=0.063 Score=53.19 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=33.0
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 146 VAVEFVANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 146 iA~aL~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+..+|=++|++++..|.. |+.++...+ +.+..|..|+.|.|-.+
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT 263 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS
T ss_pred HHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc
Confidence 455667899999999998 455554433 45567999999999754
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.70 E-value=0.015 Score=57.20 Aligned_cols=22 Identities=27% Similarity=0.730 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHh
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLA 67 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~ 67 (531)
++++..+|||||||||+|.+|+
T Consensus 25 ~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 25 SNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5799999999999999999984
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=93.63 E-value=0.065 Score=49.66 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=27.7
Q ss_pred hhCCCeEEEeCCC-----CCC--CHHHHHHHHHHHHHHHHc-CCeEEEEec
Q 042733 151 VANPSIISRDEPI-----SGL--DARAATTVIRMVRNTVDM-GRTVVCTIH 193 (531)
Q Consensus 151 ~~~p~lllLDEPt-----sgL--D~~~~~~i~~~L~~l~~~-g~tvi~~~H 193 (531)
-.+|+++++|=-+ .+- +......+++.|++++++ +.+|++++|
T Consensus 145 ~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q 195 (277)
T d1cr2a_ 145 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICH 195 (277)
T ss_dssp TTCCSEEEEEEEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred ccCcceEEEcccccccccccccchhHHHHHHHHHHHHHhhhccccceeecc
Confidence 4589999999431 111 113345577788888875 888887777
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.62 E-value=0.015 Score=49.88 Aligned_cols=20 Identities=35% Similarity=0.338 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..||+|+|||||++.++..
T Consensus 5 ~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 5 FLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp EEESCCSSCHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHH
Confidence 45699999999999999984
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.33 E-value=0.018 Score=49.37 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=18.8
Q ss_pred EEEcCCCchHHHHHHHHhCCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
...||.|||||||.+.|+....
T Consensus 11 ~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 11 AILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEECCTTSHHHHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999998653
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.15 E-value=0.024 Score=48.61 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
|-+..|+.|||||||++.|...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5678899999999999988774
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.08 E-value=0.068 Score=49.75 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.3
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+..||.|+|||+|.++|++..
T Consensus 45 LL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 45 LFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp EEBCCTTSSHHHHHHHHHHHT
T ss_pred EEECCCCCcchhHHHHHHHHh
Confidence 466788999999999999965
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.83 E-value=0.026 Score=51.49 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCCC
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+..+..+|++|+|||||+|.|.|..
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCCHHHHHHhhcchh
Confidence 4677899999999999999999853
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=92.68 E-value=0.029 Score=46.86 Aligned_cols=22 Identities=36% Similarity=0.320 Sum_probs=18.2
Q ss_pred EEEcCCCchHHHHHHHHhCCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
+.+||.||||||+.|.|+-...
T Consensus 6 ~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 6 FLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp EEECCTTSCHHHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 3459999999999999987653
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=92.62 E-value=0.031 Score=46.65 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=17.5
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G 68 (531)
+-+..|+.|||||||.+.|..
T Consensus 4 lIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 446789999999999998864
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.47 E-value=0.13 Score=46.59 Aligned_cols=43 Identities=14% Similarity=0.077 Sum_probs=29.6
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 152 ANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 152 ~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
.+.+++++||.-. |....+..+.+.+.+.. ....+|+++++++
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~ 172 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS 172 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred CCceEEEeccccc-cccccchhhhccccccc-ccccceeeecccc
Confidence 4567999999864 77777777766665432 2345788888875
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.37 E-value=0.032 Score=50.35 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G 68 (531)
|-+..|+-|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 456789999999999999975
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=92.24 E-value=0.018 Score=52.80 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCC
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..+..+|++|+|||||+|.|.|.
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred cceEEEECCCCccHHHHHHhhccH
Confidence 468889999999999999999995
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=91.95 E-value=0.041 Score=46.71 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-...|+.||||||+.+.|+...
T Consensus 8 iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 8 IYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999864
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=91.95 E-value=0.041 Score=46.45 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
+-...||.||||||+.+.|+....
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 456779999999999999997653
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=91.91 E-value=0.036 Score=46.98 Aligned_cols=20 Identities=40% Similarity=0.406 Sum_probs=17.1
Q ss_pred EEcCCCchHHHHHHHHhCCC
Q 042733 51 AFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 51 ~i~~gGaGKTTLLk~L~G~~ 70 (531)
..||.||||||+.+.|+-+.
T Consensus 9 i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 9 LTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 56899999999999998643
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=91.87 E-value=0.033 Score=48.88 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.1
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+.+|+.|+|||||+|.|+|..
T Consensus 26 I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCCCHHHHHHHhcCCC
Confidence 5678999999999999999964
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.80 E-value=0.041 Score=49.78 Aligned_cols=59 Identities=20% Similarity=0.138 Sum_probs=39.0
Q ss_pred hCCCeEEEeCCCC---CCCHHHHHHHHHHHHHHHH-cCCeEEEEecCC---------chHHHhccCeEEEEc
Q 042733 152 ANPSIISRDEPIS---GLDARAATTVIRMVRNTVD-MGRTVVCTIHQP---------SIDIFYSFDELFLLK 210 (531)
Q Consensus 152 ~~p~lllLDEPts---gLD~~~~~~i~~~L~~l~~-~g~tvi~~~H~~---------~~~i~~~~d~v~lL~ 210 (531)
.+|++++.|--+. +.+..........|.++++ .+.+++++.|-. +..+...+|-++.+.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 4789999997543 4466666666666655554 588988888742 112445688888775
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.76 E-value=0.97 Score=41.63 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G 68 (531)
+-+..|.||.|||||.+.+..
T Consensus 46 ~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 46 FLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 567889999999999999864
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=91.53 E-value=0.042 Score=46.74 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=18.4
Q ss_pred EEEcCCCchHHHHHHHHhCCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
...||.||||||+.+.|+-...
T Consensus 9 ~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 9 LITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp EEECSTTSSHHHHHHHHHHHST
T ss_pred EEEeCCCCCHHHHHHHHHHHhC
Confidence 4568999999999999997653
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=91.46 E-value=0.042 Score=46.34 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=18.4
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.|+|..
T Consensus 5 ~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 5 VIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEESTTSSHHHHHHHHHTSC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999853
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.41 E-value=0.045 Score=46.83 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.|+|..
T Consensus 4 ~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 4 LIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEECCTTSSHHHHHHHHHC--
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999953
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.35 E-value=0.034 Score=47.60 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+.+|+.|||||||++.|.+.
T Consensus 17 ~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 17 VFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEETTSSHHHHHHHHSCC
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999984
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.34 E-value=0.041 Score=47.46 Aligned_cols=21 Identities=33% Similarity=0.358 Sum_probs=18.4
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+.+|+.|+|||||+|.|+|..
T Consensus 4 ~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 4 IFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEBTTSSHHHHHHHHHSCC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999953
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.17 E-value=0.058 Score=46.82 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhCCCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
-+-..+||+|||||||++.|....+
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3456789999999999999987543
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=90.99 E-value=0.059 Score=45.73 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-+..||.||||||+.+.|+...
T Consensus 6 iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45677899999999999999865
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.95 E-value=0.062 Score=45.87 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=18.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
|-...|+.||||||+.+.|+-+
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4567789999999999999764
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.88 E-value=0.056 Score=46.82 Aligned_cols=21 Identities=33% Similarity=0.305 Sum_probs=17.3
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-|.-|+.|||||||.+.|+-.
T Consensus 25 IgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 25 LGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 455668899999999999753
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=90.84 E-value=0.06 Score=45.91 Aligned_cols=20 Identities=35% Similarity=0.300 Sum_probs=17.3
Q ss_pred EEcCCCchHHHHHHHHhCCC
Q 042733 51 AFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 51 ~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+|+.||||||+.|.|+-..
T Consensus 5 liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 5 FIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 45899999999999998754
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=90.65 E-value=0.059 Score=46.61 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=18.7
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+.+|..|+|||||++.|+|..
T Consensus 12 ~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 12 AIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEECSTTSSHHHHHHHHHTST
T ss_pred EEECCCCCCHHHHHHHHHCCC
Confidence 678999999999999999854
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.63 E-value=0.048 Score=45.41 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.|.+.
T Consensus 4 ~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 4 LFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999984
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.51 E-value=0.069 Score=45.20 Aligned_cols=22 Identities=14% Similarity=-0.088 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+..|+.||||||+-+.|+-+.
T Consensus 9 I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 9 IFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999998643
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.32 E-value=0.038 Score=47.96 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+.+|+.|+|||||+|.|+|.
T Consensus 5 aiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 5 GLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEESSTTSSHHHHHHHSEEE
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999884
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=90.13 E-value=0.081 Score=44.66 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
+-+..|+.||||||+.+.|+....
T Consensus 5 iI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 345568999999999999999654
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=89.98 E-value=0.72 Score=40.90 Aligned_cols=48 Identities=4% Similarity=0.032 Sum_probs=38.5
Q ss_pred HhhCCCeEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCCeEEEEecCCch
Q 042733 150 FVANPSIISRDEPISG-LDARAATTVIRMVRNTVDMGRTVVCTIHQPSI 197 (531)
Q Consensus 150 L~~~p~lllLDEPtsg-LD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~ 197 (531)
...+.++|++|+--.= =+...+..+..++....+.|+.+|+++..+..
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~ 142 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 142 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred HHhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcch
Confidence 3568999999987432 35778888999999988889999999987654
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=89.91 E-value=0.071 Score=45.12 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.|.|.
T Consensus 6 ~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 6 LMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEECSTTSSHHHHHHHHTTC
T ss_pred EEECCCCCCHHHHHHHHcCC
Confidence 36899999999999999984
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.89 E-value=0.073 Score=45.51 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.1
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-+.+|..|+|||||+|.|+|..
T Consensus 8 I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999963
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.85 E-value=0.059 Score=47.39 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=18.6
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|||||||++.|.|..
T Consensus 7 ~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 7 IIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEECSTTSSHHHHHHHHHHSS
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999853
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=89.77 E-value=0.054 Score=46.78 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=18.1
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+.+|..|+|||||+|.|+|..
T Consensus 5 aivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 5 GLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEECCGGGCHHHHHHHHCSSC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 457888999999999999853
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=89.54 E-value=0.066 Score=44.54 Aligned_cols=19 Identities=32% Similarity=0.233 Sum_probs=17.1
Q ss_pred EEcCCCchHHHHHHHHhCC
Q 042733 51 AFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 51 ~i~~gGaGKTTLLk~L~G~ 69 (531)
.+|+.|+|||||++.|++.
T Consensus 5 lvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 5 MVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 6899999999999999873
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=89.25 E-value=0.071 Score=44.63 Aligned_cols=20 Identities=35% Similarity=0.297 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 9 ~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 9 LILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999884
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.07 E-value=0.075 Score=45.96 Aligned_cols=21 Identities=33% Similarity=0.183 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+..|+.||||||+.|.|+-+
T Consensus 22 I~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 22 VWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp EEEESSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 356699999999999999864
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=89.02 E-value=0.095 Score=45.05 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
.-..+|+.|+|||||+|.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35678999999999999999963
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=88.93 E-value=0.093 Score=44.89 Aligned_cols=21 Identities=29% Similarity=0.139 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.||||||+-+.|+-..
T Consensus 6 il~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 6 FMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEESCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 357999999999999998643
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.90 E-value=0.1 Score=45.53 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+-+.+||.||||||+.+.|+-.
T Consensus 8 iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5578999999999999999864
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=88.83 E-value=0.092 Score=44.67 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=18.4
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|..|||||||++.|.+..
T Consensus 19 ~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 19 IIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEESTTSSHHHHHHHHHTTS
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 367899999999999999954
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.77 E-value=0.068 Score=48.91 Aligned_cols=23 Identities=22% Similarity=0.118 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHhCCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
-+..||.|||||||.+.|++...
T Consensus 35 ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 35 FLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 45679999999999999999643
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.61 E-value=0.099 Score=45.60 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=18.5
Q ss_pred EEEcCCCchHHHHHHHHhCCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
..+||+|||||||++.|+...+
T Consensus 5 vl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 5 VISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEECCTTSSHHHHHHHHHHHCT
T ss_pred EEECCCCCCHHHHHHHHHHhCC
Confidence 4689999999999999987543
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=88.47 E-value=0.053 Score=46.45 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+.+|+.++|||||+|.|+|..
T Consensus 20 ~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 20 AFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEECTTSSHHHHHTTTCCC-
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999954
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=88.39 E-value=0.097 Score=45.51 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+.+||.||||||+.+.|+-..
T Consensus 7 ~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 7 MISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999998643
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.10 E-value=0.13 Score=44.87 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-+.+||.||||||+.+.|+-..
T Consensus 10 iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45778999999999999998854
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.93 E-value=0.12 Score=44.30 Aligned_cols=20 Identities=25% Similarity=0.234 Sum_probs=17.4
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+||.||||||+.+.|+-.
T Consensus 4 ~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 4 VLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999764
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.87 E-value=0.14 Score=45.40 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=17.5
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+.-|+.||||||+.+.|+-.
T Consensus 5 IgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 5 IGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 356678899999999999764
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=87.36 E-value=0.13 Score=44.28 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=18.0
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+.+||.||||||+.+.|+-..
T Consensus 4 ~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 4 VLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 357999999999999999743
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.96 E-value=0.13 Score=44.99 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=17.3
Q ss_pred EEcCCCchHHHHHHHHhCCC
Q 042733 51 AFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 51 ~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+||+|||||||++.|.-..
T Consensus 5 l~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 5 LSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhC
Confidence 67999999999999997643
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.85 E-value=0.13 Score=43.73 Aligned_cols=20 Identities=30% Similarity=0.253 Sum_probs=17.0
Q ss_pred EEcCCCchHHHHHHHHhCCC
Q 042733 51 AFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 51 ~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+|+.||||||+-|.|+-+.
T Consensus 6 liG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 6 LVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 34889999999999998754
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=86.83 E-value=0.14 Score=47.30 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=18.3
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|..|+|||||+|.|.|..
T Consensus 36 ~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 36 LVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEESTTSSHHHHHHHHHTSC
T ss_pred EEECCCCCcHHHHHHHHhCCC
Confidence 467889999999999999953
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.79 E-value=0.17 Score=43.67 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=18.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G 68 (531)
.+-..+|+.||||||+.+-++-
T Consensus 15 ~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 15 EVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CEEEEECCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3567889999999999998854
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.69 E-value=0.048 Score=45.87 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=17.5
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+.+|+.|+|||||+|.|+|.
T Consensus 4 ~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 4 VIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEECCHHHHTCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 45788899999999999984
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.63 E-value=0.13 Score=45.36 Aligned_cols=20 Identities=25% Similarity=0.031 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.|.+.
T Consensus 4 ~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 4 LFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999874
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=86.44 E-value=0.92 Score=41.71 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCchHHHHHHHHhC
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G 68 (531)
..++-..||.|+|||||+-.++.
T Consensus 54 g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 54 GRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEecCCCcHHHHHHHHHHH
Confidence 35888899999999999877766
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.41 E-value=0.19 Score=43.63 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=18.3
Q ss_pred EEEEcCCCchHHHHHHHHhCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~ 69 (531)
-+.+||.||||||..+.|+-.
T Consensus 4 I~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 4 VFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 367899999999999999864
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=86.36 E-value=0.16 Score=45.70 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=18.1
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+..||.|+||||+.++|+...
T Consensus 39 L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 39 LLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEESSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHhcc
Confidence 567899999999999998743
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.27 E-value=0.16 Score=45.48 Aligned_cols=20 Identities=40% Similarity=0.293 Sum_probs=17.8
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..||.|+|||||.++|+..
T Consensus 49 ll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 49 LFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEESCTTSSHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHH
Confidence 56789999999999999874
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=86.19 E-value=0.18 Score=42.95 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=16.9
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
...|+.||||||+.+.|+.+
T Consensus 5 vi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 5 IVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEECTTSCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 34578899999999999875
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=86.13 E-value=0.14 Score=43.22 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=16.7
Q ss_pred EEcCCCchHHHHHHHHhCC
Q 042733 51 AFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 51 ~i~~gGaGKTTLLk~L~G~ 69 (531)
.+|+.|+|||||++.+.+.
T Consensus 7 i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 7 LVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 5799999999999988763
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.11 E-value=0.16 Score=45.88 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHhCCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~~ 71 (531)
=+..||.|+||||+.++|+....
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 35668999999999999998543
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=86.07 E-value=0.15 Score=43.37 Aligned_cols=21 Identities=38% Similarity=0.387 Sum_probs=18.3
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 20 ~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 20 LLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEESTTSSHHHHHHHHCCSC
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999998853
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.92 E-value=0.22 Score=43.13 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHhCCC
Q 042733 49 SGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G~~ 70 (531)
-..+||+|+|||||++.|....
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999998643
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.90 E-value=0.18 Score=43.35 Aligned_cols=20 Identities=40% Similarity=0.385 Sum_probs=17.2
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+||.||||||+.+.|+-.
T Consensus 4 ~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 4 LLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999864
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=85.85 E-value=0.17 Score=43.57 Aligned_cols=21 Identities=43% Similarity=0.442 Sum_probs=17.4
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|.-+||||||+|.|+|..
T Consensus 9 aiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 9 GIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEECTTSSHHHHHHHHHTTC
T ss_pred EEEeCCCCcHHHHHHHHHHhc
Confidence 356777999999999999853
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.73 E-value=0.18 Score=43.36 Aligned_cols=19 Identities=42% Similarity=0.483 Sum_probs=16.9
Q ss_pred EEcCCCchHHHHHHHHhCC
Q 042733 51 AFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 51 ~i~~gGaGKTTLLk~L~G~ 69 (531)
.+||.||||||+.+.|+-.
T Consensus 7 l~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 7 LIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5689999999999999874
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.66 E-value=0.21 Score=43.47 Aligned_cols=20 Identities=20% Similarity=0.061 Sum_probs=17.5
Q ss_pred EEEEcCCCchHHHHHHHHhC
Q 042733 49 SGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G 68 (531)
-..+|..|||||||.+.|+.
T Consensus 5 i~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 5 IVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 35678899999999999996
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=85.58 E-value=0.22 Score=44.23 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-..+||+|+|||||.+.|.-..
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 44578999999999999997653
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.57 E-value=0.2 Score=43.61 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+-+.+||.||||||+.+.|+-..
T Consensus 10 iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 10 IIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999998754
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=85.47 E-value=0.18 Score=43.23 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=16.7
Q ss_pred EEcCCCchHHHHHHHHhCC
Q 042733 51 AFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 51 ~i~~gGaGKTTLLk~L~G~ 69 (531)
.+||.||||||..+.|+-.
T Consensus 5 i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 5 LLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5789999999999999864
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.46 E-value=0.19 Score=44.93 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=17.4
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..||.|+|||||.++++..
T Consensus 37 ll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 37 LFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCChHHHHHHHHHH
Confidence 45689999999999999874
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=85.25 E-value=1.2 Score=41.06 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=19.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
.++-..||.|||||||.-.++..
T Consensus 58 ~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 58 RITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCccchHHHHHHHHHH
Confidence 47888899999999999888773
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=85.14 E-value=0.16 Score=45.74 Aligned_cols=20 Identities=50% Similarity=0.632 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..||.|+|||||.+++++.
T Consensus 39 Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 39 LLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999974
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.00 E-value=0.17 Score=42.93 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=16.8
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++.+.+
T Consensus 9 ~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 9 LIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHc
Confidence 4689999999999998875
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=84.51 E-value=0.24 Score=43.77 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=16.4
Q ss_pred cCCCchHHHHHHHHhCCC
Q 042733 53 RPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 53 ~~gGaGKTTLLk~L~G~~ 70 (531)
||.||||||..+.|+-..
T Consensus 10 Gp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 10 GPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp CSSCSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 899999999999999853
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=83.98 E-value=0.21 Score=47.85 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.6
Q ss_pred EEEEcCCCchHHHHHHHHhC
Q 042733 49 SGAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 49 s~~i~~gGaGKTTLLk~L~G 68 (531)
-|..||.|||||||++.|..
T Consensus 57 IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 57 LGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 47778999999999999985
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=83.83 E-value=0.25 Score=42.71 Aligned_cols=19 Identities=42% Similarity=0.473 Sum_probs=16.6
Q ss_pred EEcCCCchHHHHHHHHhCC
Q 042733 51 AFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 51 ~i~~gGaGKTTLLk~L~G~ 69 (531)
.+||.||||||..+.|+-.
T Consensus 8 l~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 8 LLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 3799999999999999953
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.68 E-value=0.63 Score=39.74 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=17.5
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 9 ~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 9 LALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEESCTTSSHHHHHHHHHCS
T ss_pred EEECCCCcCHHHHHHHHhcC
Confidence 46899999999999999874
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=83.67 E-value=0.21 Score=43.36 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=16.5
Q ss_pred EEcCCCchHHHHHHHHhCCCC
Q 042733 51 AFRPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 51 ~i~~gGaGKTTLLk~L~G~~~ 71 (531)
.-|+-||||||++|.|+....
T Consensus 14 ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 14 IEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EECSTTSCHHHHHHTTGGGTT
T ss_pred EECCCCCCHHHHHHHHHHHhC
Confidence 335559999999999987653
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.46 E-value=0.22 Score=42.30 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=16.9
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++.+.+
T Consensus 6 ~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 6 IILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHc
Confidence 3689999999999999876
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.22 E-value=0.21 Score=42.14 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=16.8
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++.+.+
T Consensus 7 ~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 7 VVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 4678999999999998876
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=83.02 E-value=0.28 Score=42.74 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=17.5
Q ss_pred EEcCCCchHHHHHHHHhCCC
Q 042733 51 AFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 51 ~i~~gGaGKTTLLk~L~G~~ 70 (531)
.+||.||||||+.+.|+-..
T Consensus 11 liG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 11 IMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EECCTTSSHHHHHHHHHHHB
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999753
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.83 E-value=0.3 Score=41.20 Aligned_cols=19 Identities=32% Similarity=0.590 Sum_probs=16.8
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|..|+|||||++-+.+
T Consensus 6 ~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 6 AVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEECCTTSSHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 4688999999999998877
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=82.69 E-value=0.27 Score=46.92 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=34.9
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEec----CCchHHHhccCeEEEEc
Q 042733 151 VANPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIH----QPSIDIFYSFDELFLLK 210 (531)
Q Consensus 151 ~~~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H----~~~~~i~~~~d~v~lL~ 210 (531)
..+|.+.+=.=||.|-...-.....+.+.-+...|.-+|++.. |-+.++...+|..+++.
T Consensus 109 ~~~~~~~ir~~~~~~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~~~~D~~v~v~ 172 (323)
T d2qm8a1 109 AIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLM 172 (323)
T ss_dssp GGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEE
T ss_pred hcccceeeccccccccccchhHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhhcccceEEEEe
Confidence 4466666666677777666666666666554445665555543 33444555666655543
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=82.34 E-value=0.33 Score=43.69 Aligned_cols=23 Identities=9% Similarity=0.219 Sum_probs=18.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhCC
Q 042733 47 SLSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 47 ~vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
.+-...||.|+|||||++.++-.
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Confidence 45567799999999999988753
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.87 E-value=0.35 Score=41.09 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
..+|+.|+|||||++.+.+.
T Consensus 7 ~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 7 VLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEECCTTSSHHHHHHHHHCC
T ss_pred EEECCCCcCHHHHHHHHHhC
Confidence 35889999999999999884
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.80 E-value=0.26 Score=41.51 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=16.6
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++.+.+
T Consensus 6 ~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 6 LLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHh
Confidence 3688999999999998876
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.76 E-value=0.29 Score=48.08 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=18.6
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
+.+|..|+|||||+|.|.|..
T Consensus 60 ai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 60 AVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEECTTSSHHHHHHHHHTCC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 578889999999999999953
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.75 E-value=0.34 Score=40.55 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=16.7
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++.+.+
T Consensus 6 ~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 6 IVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHh
Confidence 4789999999999998875
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.49 E-value=0.29 Score=41.77 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=16.8
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|..|+|||||++.+.+
T Consensus 11 ~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 11 LIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHh
Confidence 4688999999999999876
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.35 E-value=0.29 Score=41.62 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=16.6
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++.+.+
T Consensus 8 ~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 8 VLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEESSTTSSHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHh
Confidence 4689999999999998766
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.33 E-value=0.28 Score=42.84 Aligned_cols=17 Identities=47% Similarity=0.708 Sum_probs=14.3
Q ss_pred cCCCchHHHHHHHHhCC
Q 042733 53 RPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 53 ~~gGaGKTTLLk~L~G~ 69 (531)
|.-||||||+++.|...
T Consensus 7 G~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 7 GVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp CSTTSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 44599999999999874
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.31 E-value=0.37 Score=40.66 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.7
Q ss_pred EEEcCCCchHHHHHHHHhCCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~~ 70 (531)
..+|+.|+|||||++.+.+..
T Consensus 5 ~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 5 LLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEECCTTSSHHHHHHHHHTC-
T ss_pred EEECCCCcCHHHHHHHHhCCc
Confidence 357899999999999999853
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.16 E-value=0.35 Score=42.90 Aligned_cols=71 Identities=15% Similarity=0.114 Sum_probs=37.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCchHHHhccCeEEEEccCceeeecCCCCCCchhHHHHH
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPSIDIFYSFDELFLLKQVGQEISVGPLGPSSIHLISYF 232 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~~~i~~~~d~v~lL~~~G~~v~~G~~~~~~~~~~~~f 232 (531)
+.+++++||.- ++....+..+...+.... ....+++++++.+. +... +.+. -+.+...++.. +++..+.
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~~-i~~~-----l~sr-~~~i~~~~~~~--~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYS-NSTRFAFACNQSNK-IIEP-----LQSQ-CAILRYSKLSD--EDVLKRL 169 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTT-TTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccc-cceeeeeccCchhh-hhhH-----HHHH-HHHhhhcccch--hhhHHHH
Confidence 46799999965 455556655555554322 24456777776542 2111 1232 44555666542 3455555
Q ss_pred Hh
Q 042733 233 EK 234 (531)
Q Consensus 233 ~~ 234 (531)
..
T Consensus 170 ~~ 171 (224)
T d1sxjb2 170 LQ 171 (224)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.08 E-value=0.34 Score=40.94 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=16.8
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++.+.+
T Consensus 9 ~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 9 VLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHh
Confidence 4688999999999999886
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.97 E-value=0.35 Score=41.62 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=15.9
Q ss_pred EEEcCCCchHHHHHHHHh
Q 042733 50 GAFRPGGAGKTTLMDVLA 67 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~ 67 (531)
..+|.+|+|||||++-+.
T Consensus 6 vllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 6 LLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 468999999999999984
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.92 E-value=0.36 Score=42.81 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=27.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEecCCc
Q 042733 153 NPSIISRDEPISGLDARAATTVIRMVRNTVDMGRTVVCTIHQPS 196 (531)
Q Consensus 153 ~p~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tvi~~~H~~~ 196 (531)
+.+++++||. ..+....+..+++.+.+..+ ...++++++++.
T Consensus 99 ~~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~ 140 (227)
T d1sxjc2 99 GFKLIILDEA-DAMTNAAQNALRRVIERYTK-NTRFCVLANYAH 140 (227)
T ss_dssp SCEEEEETTG-GGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CeEEEEEecc-ccchhhHHHHHHHHhhhccc-ceeeccccCcHH
Confidence 3469999996 46777877777777765432 334555665543
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.86 E-value=0.31 Score=41.35 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=16.6
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++.+.+
T Consensus 7 vvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 7 IIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEESSTTSSHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHhc
Confidence 3689999999999998776
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=80.50 E-value=0.38 Score=43.87 Aligned_cols=20 Identities=30% Similarity=0.238 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHhCC
Q 042733 50 GAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G~ 69 (531)
+..||.|+|||+|.++|+..
T Consensus 44 LL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 44 LLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHhhc
Confidence 46689999999999999974
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.48 E-value=0.4 Score=40.17 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=16.1
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++-+.+
T Consensus 6 ~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 6 VVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHh
Confidence 3689999999999997764
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=80.44 E-value=0.37 Score=45.50 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCchHHHHHHHHhCC
Q 042733 46 NSLSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 46 ~~vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
+++ +.+||.|+|||+|.|+|+..
T Consensus 50 ~~i-Ll~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNI-LMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCE-EEECCTTSSHHHHHHHHHHH
T ss_pred ceE-EEECCCCCCHHHHHHHHhhc
Confidence 344 45799999999999999985
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=80.38 E-value=0.38 Score=43.24 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~ 69 (531)
.-+..||.|+||||++|.|+..
T Consensus 45 ~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 45 RATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999874
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=80.32 E-value=0.26 Score=42.20 Aligned_cols=19 Identities=37% Similarity=0.368 Sum_probs=16.8
Q ss_pred EEcCCCchHHHHHHHHhCC
Q 042733 51 AFRPGGAGKTTLMDVLAGR 69 (531)
Q Consensus 51 ~i~~gGaGKTTLLk~L~G~ 69 (531)
.+|+.|+|||||++.+.+.
T Consensus 22 lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 22 ILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEETTSSHHHHHHHTCCS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 6889999999999998763
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.26 E-value=0.19 Score=44.96 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=16.1
Q ss_pred cCCCchHHHHHHHHhCCCC
Q 042733 53 RPGGAGKTTLMDVLAGRKP 71 (531)
Q Consensus 53 ~~gGaGKTTLLk~L~G~~~ 71 (531)
|+-||||||+++.|+....
T Consensus 9 G~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 9 GNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CSTTSSHHHHHTTTGGGCT
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 4559999999999998654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.20 E-value=0.32 Score=40.76 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=16.6
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|..|+|||||++.+.+
T Consensus 4 ~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 4 VFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHh
Confidence 3578899999999999876
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.18 E-value=0.34 Score=40.73 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=16.5
Q ss_pred EEEcCCCchHHHHHHHHhC
Q 042733 50 GAFRPGGAGKTTLMDVLAG 68 (531)
Q Consensus 50 ~~i~~gGaGKTTLLk~L~G 68 (531)
..+|+.|+|||||++.+.+
T Consensus 8 vlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 8 IIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHh
Confidence 4679999999999988876
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=80.06 E-value=0.47 Score=41.44 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCCC
Q 042733 48 LSGAFRPGGAGKTTLMDVLAGRK 70 (531)
Q Consensus 48 vs~~i~~gGaGKTTLLk~L~G~~ 70 (531)
|-...||.||||||+-+.|+-..
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45667999999999999999854
|