Citrus Sinensis ID: 042735
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 667 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZG8 | 1045 | Probable LRR receptor-lik | yes | no | 0.976 | 0.622 | 0.405 | 1e-140 | |
| Q9LP24 | 1120 | Probable leucine-rich rep | no | no | 0.947 | 0.564 | 0.398 | 1e-133 | |
| Q9SHI2 | 1101 | Leucine-rich repeat recep | no | no | 0.967 | 0.585 | 0.318 | 2e-86 | |
| Q9LVP0 | 1102 | Probable leucine-rich rep | no | no | 0.955 | 0.578 | 0.311 | 1e-77 | |
| Q9FII5 | 1041 | Leucine-rich repeat recep | no | no | 0.914 | 0.585 | 0.294 | 6e-72 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.955 | 0.508 | 0.296 | 1e-71 | |
| Q9LYN8 | 1192 | Leucine-rich repeat recep | no | no | 0.964 | 0.539 | 0.296 | 2e-71 | |
| Q9FZ59 | 1088 | Leucine-rich repeat recep | no | no | 0.962 | 0.590 | 0.291 | 2e-71 | |
| C0LGV1 | 1135 | LRR receptor-like serine/ | no | no | 0.955 | 0.561 | 0.301 | 4e-71 | |
| Q9M2Z1 | 1002 | Leucine-rich repeat recep | no | no | 0.929 | 0.618 | 0.314 | 7e-71 |
| >sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3 | Back alignment and function desciption |
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Score = 499 bits (1286), Expect = e-140, Method: Compositional matrix adjust.
Identities = 298/735 (40%), Positives = 419/735 (57%), Gaps = 84/735 (11%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
N+ L LHL N L G IP E ++S++ L + N+ G +P S G L++L +LFL +
Sbjct: 308 NIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRD 367
Query: 61 NNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N LSG IPP + N LTVL L+ N+FTG L ICR G LE + + NHF GP+PK LR
Sbjct: 368 NQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLR 427
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
+C +L+R+ +GN+ G ISEAFG+Y L F+D+S+NNF G++++NW + KL +S
Sbjct: 428 DCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSN 487
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
N+IT +IP EI N++ L++ DLS N I G++P+ +N ++KL L GN+L G +PS I
Sbjct: 488 NSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIR 547
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLS------ 293
LT LE+L+LS+NRFSS IP +L NL +L+Y++LS+ Q +P+ L KL QL
Sbjct: 548 LLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSY 607
Query: 294 ------------------ELELSHNFLGREIPSQICSMECCEVFCTITNS----VPTNN- 330
L+LSHN L +IP M N+ +P N
Sbjct: 608 NQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAA 667
Query: 331 FLNCQ-KGYACQKVVLTFQQFSTSAKICPNLSRLPTNHH---------PQSGCI---SVI 377
F N + K + + K C S ++ P G I SV
Sbjct: 668 FRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHKDRNLIIYILVPIIGAIIILSVC 727
Query: 378 AYVPIIWDQANREGQRSPQNSQG--LLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRHG 435
A + I + + ++ + + G LSI SF GK Y EII+A +FD KY IG+G HG
Sbjct: 728 AGIFICFRKRTKQIEEHTDSESGGETLSIFSFDGKVRYQEIIKATGEFDPKYLIGTGGHG 787
Query: 436 SVYRAELPSKEFLAVKKFNSPLPSD--QIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA 493
VY+A+LP+ +AVKK N S + ++EF EI ALT+IRHRN+VK +GFCSH
Sbjct: 788 KVYKAKLPNA-IMAVKKLNETTDSSISNPSTKQEFLNEIRALTEIRHRNVVKLFGFCSHR 846
Query: 494 RHSILIYEYLKRGSLATNLSNDAAAEELD------------------------------I 523
R++ L+YEY++RGSL L ND A++LD I
Sbjct: 847 RNTFLVYEYMERGSLRKVLENDDEAKKLDWGKRINVVKGVAHALSYMHHDRSPAIVHRDI 906
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSF 577
SS N+LL +++A +SDFG AK LKPDSSNWSA+ GTY YVAP+ +KCDVYSF
Sbjct: 907 SSGNILLGEDYEAKISDFGTAKLLKPDSSNWSAVAGTYGYVAPELAYAMKVTEKCDVYSF 966
Query: 578 RVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSC 637
VL LEVIKG+HP VS++ SP + L + D RLP P+P+++ +++ I++VA C
Sbjct: 967 GVLTLEVIKGEHPGDLVSTLSSSPPDATLSLKSISDHRLPEPTPEIKEEVLEILKVALLC 1026
Query: 638 LDVSPESRPTMQTIT 652
L P++RPTM +I+
Sbjct: 1027 LHSDPQARPTMLSIS 1041
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Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 474 bits (1220), Expect = e-133, Method: Compositional matrix adjust.
Identities = 286/717 (39%), Positives = 404/717 (56%), Gaps = 85/717 (11%)
Query: 17 GLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLM- 75
G+IP E N++S++ L L N+ GS+P S GN + L L+L N+LSG+IPP V N
Sbjct: 404 GVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSH 463
Query: 76 LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMR 135
LT L L+ N+FTG +C+ L+ + + NH GPIPK LR+C +L+R GN
Sbjct: 464 LTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFT 523
Query: 136 GTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLST 195
G I EAFGIY +L F+D S N F GEI+SNW K PKL L +S NNIT +IP EI N++
Sbjct: 524 GDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMTQ 583
Query: 196 LNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFS 255
L E DLS N++ G++P+ G L +L++L L GNQL G +P+ + LT LE L+LS+N FS
Sbjct: 584 LVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFS 643
Query: 256 SLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMEC 315
S IP++ + LKLH ++LS+ +F +P+ L KL QL++L+LSHN L EIPSQ+ S++
Sbjct: 644 SEIPQTFDSFLKLHDMNLSRNKFDGSIPR-LSKLTQLTQLDLSHNQLDGEIPSQLSSLQS 702
Query: 316 C------------------EVFCTITNSVPTNNFLNCQKGYACQKVVLTFQQFSTSAKIC 357
E +TN +NN L T + +C
Sbjct: 703 LDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLC 762
Query: 358 PNLSRL------PTNHHPQSGCISVIAYVPI-----------------IWDQANREGQRS 394
N+ + ++G + V VPI I + + G+ +
Sbjct: 763 SNIPKQRLKPCRELKKPKKNGNLVVWILVPILGVLVILSICANTFTYCIRKRKLQNGRNT 822
Query: 395 PQNSQGLLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFN 454
+ +SI S GKF Y +II + N+FD + IG+G + VYRA L +AVK+ +
Sbjct: 823 DPETGENMSIFSVDGKFKYQDIIESTNEFDPTHLIGTGGYSKVYRANL-QDTIIAVKRLH 881
Query: 455 SPLPSDQIAD---QKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATN 511
+ ++I+ ++EF E++ALT+IRHRN+VK +GFCSH RH+ LIYEY+++GSL
Sbjct: 882 DTI-DEEISKPVVKQEFLNEVKALTEIRHRNVVKLFGFCSHRRHTFLIYEYMEKGSLNKL 940
Query: 512 LSNDAAAEEL------------------------------DISSKNVLLDLEHKAHVSDF 541
L+ND A+ L DISS N+LLD ++ A +SDF
Sbjct: 941 LANDEEAKRLTWTKRINVVKGVAHALSYMHHDRITPIVHRDISSGNILLDNDYTAKISDF 1000
Query: 542 GIAKFLKPDSSNWSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVS 595
G AK LK DSSNWSA+ GTY YVAP++ +KCDVYSF VL LE+I GKHP VS
Sbjct: 1001 GTAKLLKTDSSNWSAVAGTYGYVAPEFAYTMKVTEKCDVYSFGVLILELIIGKHPGDLVS 1060
Query: 596 SILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
S+ SP + L + D R+ P + KL+ ++E+A CL +PESRPTM +I+
Sbjct: 1061 SLSSSPGEA-LSLRSISDERVLEPRGQNREKLLKMVEMALLCLQANPESRPTMLSIS 1116
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 320 bits (821), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 240/754 (31%), Positives = 349/754 (46%), Gaps = 109/754 (14%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
++ NL+ LHL +N L G IP E L L KL L N+ G++P + L L L LF+
Sbjct: 329 HILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFD 388
Query: 61 NNLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N L G IPP +G +VL + N +G + + CR L + +G N G IP+ L+
Sbjct: 389 NQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLK 448
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
C +L ++ L N + G++ NLT L++ N G I+++ GK L L ++
Sbjct: 449 TCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLAN 508
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
NN T IP EIGNL+ + F++S N + G IPKE G ++ +L L GN+ G++ E+G
Sbjct: 509 NNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELG 568
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLS-ELELS 298
L LE L LS NR + IP S G+L +L L L + +P ELGKL L L +S
Sbjct: 569 QLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNIS 628
Query: 299 HNFLGREIPSQICSMECCEVF-----------------------CTITN-----SVP-TN 329
HN L IP + +++ E+ C I+N +VP T
Sbjct: 629 HNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTA 688
Query: 330 NFLNCQKGYACQKVVLTFQQFSTSAKICPN----LSRLPTNHHPQS---------GCISV 376
F L Q S + P+ L+ L Q G + +
Sbjct: 689 VFQRMDSSNFAGNHGLCNSQRSHCQPLVPHSDSKLNWLINGSQRQKILTITCIVIGSVFL 748
Query: 377 IAYVPIIWDQANREGQRSPQNSQGLLSILSF----KGKFDYVEIIRAINDFDAKYCIGSG 432
I ++ + W RE Q ++ K F Y ++ A +F +G G
Sbjct: 749 ITFLGLCWTIKRREPAFVALEDQTKPDVMDSYYFPKKGFTYQGLVDATRNFSEDVVLGRG 808
Query: 433 RHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH 492
G+VY+AE+ E +AVKK NS + + F AEI L KIRHRNIVK YGFC H
Sbjct: 809 ACGTVYKAEMSGGEVIAVKKLNSR--GEGASSDNSFRAEISTLGKIRHRNIVKLYGFCYH 866
Query: 493 ARHSILIYEYLKRGSLATNLSND----------------AAAEEL--------------D 522
++L+YEY+ +GSL L AAE L D
Sbjct: 867 QNSNLLLYEYMSKGSLGEQLQRGEKNCLLDWNARYRIALGAAEGLCYLHHDCRPQIVHRD 926
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPD-SSNWSALVGTYRYVAPDY------RKKCDVY 575
I S N+LLD +AHV DFG+AK + S + SA+ G+Y Y+AP+Y +KCD+Y
Sbjct: 927 IKSNNILLDERFQAHVGDFGLAKLIDLSYSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIY 986
Query: 576 SFRVLALEVIKGKHP--------------RGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621
SF V+ LE+I GK P R + +++P+ EM D RL
Sbjct: 987 SFGVVLLELITGKPPVQPLEQGGDLVNWVRRSIRNMIPTI--------EMFDARLDTNDK 1038
Query: 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
++ ++++A C SP SRPTM+ + +
Sbjct: 1039 RTVHEMSLVLKIALFCTSNSPASRPTMREVVAMI 1072
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (744), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 239/768 (31%), Positives = 353/768 (45%), Gaps = 131/768 (17%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
N+ L L+L +N LTG IP E LK+L KL L N G +P L L L LF+
Sbjct: 335 NIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQ 394
Query: 61 NNLSGSIPPSVGNLM-LTVLALENNHFTG--------------------NLRHNI----- 94
N+LSG+IPP +G L VL + +NH +G NL NI
Sbjct: 395 NSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGIT 454
Query: 95 -----------------------CRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEG 131
C+ + + +G N FRG IP+ + NC L R+ L
Sbjct: 455 TCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLAD 514
Query: 132 NNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIG 191
N G + G+ L L+IS N GE+ S C L L++ NN + ++P E+G
Sbjct: 515 NGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVG 574
Query: 192 NLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEF-LNLS 250
+L L LS N++ G IP G L+ LT+L + GN G +P E+GSLT L+ LNLS
Sbjct: 575 SLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLS 634
Query: 251 TNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIP--- 307
N+ + IP L NL+ L +L L+ E+P L L S+N L IP
Sbjct: 635 YNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPLLR 694
Query: 308 -SQICSMECCEVFCT--ITNSVPTNNFLNCQK-----GYACQKVVLTFQQFSTSAKICPN 359
+ S E C + + T F Q G K++ + +A +
Sbjct: 695 NISMSSFIGNEGLCGPPLNQCIQTQPFAPSQSTGKPGGMRSSKII------AITAAVIGG 748
Query: 360 LSRLPTNHHPQSGCISVIAYVPIIWDQANREGQRSPQNSQGLLSILSF----KGKFDYVE 415
+S + +IA + + + R S Q+ Q L K F + +
Sbjct: 749 VSLM------------LIALIVYLMRRPVRTVASSAQDGQPSEMSLDIYFPPKEGFTFQD 796
Query: 416 IIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIAD-QKEFFAEIEA 474
++ A ++FD + +G G G+VY+A LP+ LAVKK S + F AEI
Sbjct: 797 LVAATDNFDESFVVGRGACGTVYKAVLPAGYTLAVKKLASNHEGGNNNNVDNSFRAEILT 856
Query: 475 LTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDA--------------AAEE 520
L IRHRNIVK +GFC+H ++L+YEY+ +GSL L + + AA+
Sbjct: 857 LGNIRHRNIVKLHGFCNHQGSNLLLYEYMPKGSLGEILHDPSCNLDWSKRFKIALGAAQG 916
Query: 521 L--------------DISSKNVLLDLEHKAHVSDFGIAKFLK-PDSSNWSALVGTYRYVA 565
L DI S N+LLD + +AHV DFG+AK + P S + SA+ G+Y Y+A
Sbjct: 917 LAYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPHSKSMSAIAGSYGYIA 976
Query: 566 PDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN-----MRLDEM--- 611
P+Y +K D+YS+ V+ LE++ GK P V I V+N +R D +
Sbjct: 977 PEYAYTMKVTEKSDIYSYGVVLLELLTGKAP---VQPIDQGGDVVNWVRSYIRRDALSSG 1033
Query: 612 -LDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658
LD RL + +++++++A C VSP +RP+M+ + L+ S
Sbjct: 1034 VLDARLTLEDERIVSHMLTVLKIALLCTSVSPVARPSMRQVVLMLIES 1081
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FII5|TDR_ARATH Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 272 bits (696), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 225/764 (29%), Positives = 343/764 (44%), Gaps = 154/764 (20%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
NL+NL L L N TG IP NLKSL L NQ GS+PS L +L +L L
Sbjct: 271 NLSNLETLFLFQNGFTGEIPESYSNLKSLKLLDFSSNQLSGSIPSGFSTLKNLTWLSLIS 330
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALE------------------ 101
NNLSG +P +G L LT L L NN+FTG L H + NG LE
Sbjct: 331 NNLSGEVPEGIGELPELTTLFLWNNNFTGVLPHKLGSNGKLETMDVSNNSFTGTIPSSLC 390
Query: 102 ------RVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISD 155
++I+ N F G +PK L C +L R + N + GTI FG NLTF+D+S+
Sbjct: 391 HGNKLYKLILFSNMFEGELPKSLTRCESLWRFRSQNNRLNGTIPIGFGSLRNLTFVDLSN 450
Query: 156 NNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFG 215
N F +I +++ P L LN+S N R +P I L F S ++++G+IP G
Sbjct: 451 NRFTDQIPADFATAPVLQYLNLSTNFFHRKLPENIWKAPNLQIFSASFSNLIGEIPNYVG 510
Query: 216 KLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSK 275
S ++ L+GN L G +P +IG KL LNLS N + +IP
Sbjct: 511 -CKSFYRIELQGNSLNGTIPWDIGHCEKLLCLNLSQNHLNGIIPW--------------- 554
Query: 276 YQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEVFCTITNS----VPTNNF 331
E+ L +++++LSHN L IPS S + F N +P+ +F
Sbjct: 555 ---------EISTLPSIADVDLSHNLLTGTIPSDFGSSKTITTFNVSYNQLIGPIPSGSF 605
Query: 332 LNCQKGYACQKVVLTFQQFSTSAKICPNLSRLPTN-------------HHPQ------SG 372
+ + FS++ +C +L P N HH + +G
Sbjct: 606 AHLNPSF-----------FSSNEGLCGDLVGKPCNSDRFNAGNADIDGHHKEERPKKTAG 654
Query: 373 CISVIAYVPI-----IWDQANREGQRSPQNSQGL----------LSILSFKG-KFDYVEI 416
I I I + A R Q+S N + +F+ F ++
Sbjct: 655 AIVWILAAAIGVGFFVLVAATRCFQKSYGNRVDGGGRNGGDIGPWKLTAFQRLNFTADDV 714
Query: 417 IRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKK-FNSPLPSDQIADQKE-FFAEIEA 474
+ ++ D +G G G+VY+AE+P+ E +AVKK + + +I +K AE++
Sbjct: 715 VECLSKTDN--ILGMGSTGTVYKAEMPNGEIIAVKKLWGKNKENGKIRRRKSGVLAEVDV 772
Query: 475 LTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL-----ATNLSNDAAAE---------- 519
L +RHRNIV+ G C++ ++L+YEY+ GSL + + AAAE
Sbjct: 773 LGNVRHRNIVRLLGCCTNRDCTMLLYEYMPNGSLDDLLHGGDKTMTAAAEWTALYQIAIG 832
Query: 520 -----------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR 562
D+ N+LLD + +A V+DFG+AK ++ D S S + G+Y
Sbjct: 833 VAQGICYLHHDCDPVIVHRDLKPSNILLDADFEARVADFGVAKLIQTDES-MSVVAGSYG 891
Query: 563 YVAPDYR------KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM---------R 607
Y+AP+Y KK D+YS+ V+ LE+I GK R S+++
Sbjct: 892 YIAPEYAYTLQVDKKSDIYSYGVILLEIITGK--RSVEPEFGEGNSIVDWVRSKLKTKED 949
Query: 608 LDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
++E+LD + ++ ++ ++ +A C SP RP M+ +
Sbjct: 950 VEEVLDKSMGRSCSLIREEMKQMLRIALLCTSRSPTDRPPMRDV 993
|
Acts with CLE41p and CLE44p peptides as a ligand-receptor pair in a signal transduction pathway involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Mediates repression of tracheary element differentiation and the promotion of procambial cells formation and polar division adjacent to phloem cells in the veins. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 271 bits (694), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 229/772 (29%), Positives = 341/772 (44%), Gaps = 135/772 (17%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
L +L LHLR+N L G IP N + + L NQ GS+PSS G L++L ++ N
Sbjct: 480 LKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNN 539
Query: 62 NLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
+L G++P S+ NL LT + +N F G++ +C + + V N F G IP L
Sbjct: 540 SLQGNLPDSLINLKNLTRINFSSNKFNGSISP-LCGSSSYLSFDVTENGFEGDIPLELGK 598
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
NL R+ L N G I FG L+ LDIS N+ G I G C KL+ ++++ N
Sbjct: 599 STNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNN 658
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGK------------------------IPKEFGK 216
++ IP +G L L E LS N VG IP+E G
Sbjct: 659 YLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGN 718
Query: 217 LNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLH-YLDLSK 275
L +L L L NQL G LPS IG L+KL L LS N + IP +G L L LDLS
Sbjct: 719 LQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSY 778
Query: 276 YQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEVFCTITNSVPTNNFLNCQ 335
F +P + L +L L+LSHN L E+P QI M+ +LN
Sbjct: 779 NNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSL-------------GYLNLS 825
Query: 336 KGYACQKVVLTFQQFSTSAKIC-PNLSRLPTNHHPQSG---------------------- 372
K+ F ++ A + L P +H ++G
Sbjct: 826 YNNLEGKLKKQFSRWQADAFVGNAGLCGSPLSHCNRAGSKNQRSLSPKTVVIISAISSLA 885
Query: 373 CISVIAYVPIIWDQANREGQRSPQNSQG------------LLSILSFKGKFDYVEIIRAI 420
I+++ V I++ + N + + + L S K + +I+ A
Sbjct: 886 AIALMVLVIILFFKQNHDLFKKVRGGNSAFSSNSSSSQAPLFSNGGAKSDIKWDDIMEAT 945
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
+ + ++ IGSG G VY+AEL + E +AVKK L D + K F E++ L IRH
Sbjct: 946 HYLNEEFMIGSGGSGKVYKAELKNGETIAVKKI---LWKDDLMSNKSFNREVKTLGTIRH 1002
Query: 481 RNIVKFYGFCSHARH--SILIYEYLKRGSLATNL---SNDAAAEEL-------------- 521
R++VK G+CS ++LIYEY+ GS+ L N E L
Sbjct: 1003 RHLVKLMGYCSSKADGLNLLIYEYMANGSVWDWLHANENTKKKEVLGWETRLKIALGLAQ 1062
Query: 522 ----------------DISSKNVLLDLEHKAHVSDFGIAKFL----KPDSSNWSALVGTY 561
DI S NVLLD +AH+ DFG+AK L ++ + + G+Y
Sbjct: 1063 GVEYLHYDCVPPIVHRDIKSSNVLLDSNIEAHLGDFGLAKILTGNYDTNTESNTMFAGSY 1122
Query: 562 RYVAPDY------RKKCDVYSFRVLALEVIKGKHPRG-----------FVSSILPSPSVI 604
Y+AP+Y +K DVYS ++ +E++ GK P +V ++L +P
Sbjct: 1123 GYIAPEYAYSLKATEKSDVYSMGIVLMEIVTGKMPTEAMFDEETDMVRWVETVLDTPPGS 1182
Query: 605 NMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656
R ++++D L P + ++E+A C P+ RP+ + ++ LL
Sbjct: 1183 EAR-EKLIDSELKSLLPCEEEAAYQVLEIALQCTKSYPQERPSSRQASEYLL 1233
|
Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (692), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 229/772 (29%), Positives = 347/772 (44%), Gaps = 129/772 (16%)
Query: 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLS 64
L L L N TG IP W +L++ N+ G LP+ +GN +SL+ L L +N L+
Sbjct: 426 LMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLT 485
Query: 65 GSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPN 123
G IP +G L L+VL L N F G + + +L + +G N+ +G IP +
Sbjct: 486 GEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQ 545
Query: 124 LVRISLEGNNMRGTISEAFGIYL------NLTFL------DISDNNFFGEIASNWGKCPK 171
L + L NN+ G+I Y +L+FL D+S N G I G+C
Sbjct: 546 LQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLV 605
Query: 172 LSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLI 231
L +++S N+++ IP + L+ L DLS N + G IPKE G L L L NQL
Sbjct: 606 LVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLN 665
Query: 232 GHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS----------------- 274
GH+P G L L LNL+ N+ +P SLGNL +L ++DLS
Sbjct: 666 GHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEK 725
Query: 275 -------KYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEVFCTITNS-- 325
+ +F E+P ELG L QL L++S N L EIP++IC + E N+
Sbjct: 726 LVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLR 785
Query: 326 --VPTNNFLNCQ---KGYACQKVVLTFQQFSTSAKICPNLSRLPTNHHPQSGCISVIAYV 380
VP++ CQ K L + + KI R ++I +V
Sbjct: 786 GEVPSDGV--CQDPSKALLSGNKELCGRVVGSDCKIEGTKLRSAWGIAGLMLGFTIIVFV 843
Query: 381 PII----WDQANREGQR-SPQN----------SQGL-------------LSILSFKG--- 409
+ W R QR P+ Q L ++I F+
Sbjct: 844 FVFSLRRWAMTKRVKQRDDPERMEESRLKGFVDQNLYFLSGSRSREPLSINIAMFEQPLL 903
Query: 410 KFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFF 469
K +I+ A + F K IG G G+VY+A LP ++ +AVKK L + +EF
Sbjct: 904 KVRLGDIVEATDHFSKKNIIGDGGFGTVYKACLPGEKTVAVKK----LSEAKTQGNREFM 959
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------- 521
AE+E L K++H N+V G+CS + +L+YEY+ GSL L N E+
Sbjct: 960 AEMETLGKVKHPNLVSLLGYCSFSEEKLLVYEYMVNGSLDHWLRNQTGMLEVLDWSKRLK 1019
Query: 522 -----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV 558
DI + N+LLD + + V+DFG+A+ + S+ S ++
Sbjct: 1020 IAVGAARGLAFLHHGFIPHIIHRDIKASNILLDGDFEPKVADFGLARLISACESHVSTVI 1079
Query: 559 -GTYRYVAPDYRK------KCDVYSFRVLALEVIKGKHPRG--FVSS-----ILPSPSVI 604
GT+ Y+ P+Y + K DVYSF V+ LE++ GK P G F S + + I
Sbjct: 1080 AGTFGYIPPEYGQSARATTKGDVYSFGVILLELVTGKEPTGPDFKESEGGNLVGWAIQKI 1139
Query: 605 NM-RLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
N + +++DP L S ++ + ++++A CL +P RP M + + L
Sbjct: 1140 NQGKAVDVIDPLL--VSVALKNSQLRLLQIAMLCLAETPAKRPNMLDVLKAL 1189
|
Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (691), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 218/747 (29%), Positives = 340/747 (45%), Gaps = 105/747 (14%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
L L+ L L N L+G IP W ++SL ++ + N G LP V L L+ L LF N
Sbjct: 339 LKKLQSLELFFNKLSGEIPIGIWKIQSLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNN 398
Query: 62 NLSGSIPPSVG-NLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
G IP S+G N L + L N FTG + ++C L I+G N G IP +R
Sbjct: 399 GFYGDIPMSLGLNRSLEEVDLLGNRFTGEIPPHLCHGQKLRLFILGSNQLHGKIPASIRQ 458
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
C L R+ LE N + G + E F L+L+++++ N+F G I + G C L T+++S N
Sbjct: 459 CKTLERVRLEDNKLSGVLPE-FPESLSLSYVNLGSNSFEGSIPRSLGSCKNLLTIDLSQN 517
Query: 181 NITRSIPLEIGNLSTLN------------------------EFDLSLNHIVGKIPKEFGK 216
+T IP E+GNL +L FD+ N + G IP F
Sbjct: 518 KLTGLIPPELGNLQSLGLLNLSHNYLEGPLPSQLSGCARLLYFDVGSNSLNGSIPSSFRS 577
Query: 217 LNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHY-LDLSK 275
SL+ L+L N +G +P + L +L L ++ N F IP S+G L L Y LDLS
Sbjct: 578 WKSLSTLVLSDNNFLGAIPQFLAELDRLSDLRIARNAFGGKIPSSVGLLKSLRYGLDLSA 637
Query: 276 YQFIQELPKELGKLVQLSELELSHNFLGR--EIPSQICSMECCEV-FCTITNSVPTNNFL 332
F E+P LG L+ L L +S+N L + + S+ +V + T +P N
Sbjct: 638 NVFTGEIPTTLGALINLERLNISNNKLTGPLSVLQSLKSLNQVDVSYNQFTGPIPVNLLS 697
Query: 333 NCQKGYACQKVVLTFQQFSTSA------KICPNLSRLPTNHHPQSGCISVIAYVPIIWDQ 386
N K ++ + +S SA K C +L T S ++ + +++
Sbjct: 698 NSSK-FSGNPDLCIQASYSVSAIIRKEFKSCKGQVKLSTWKIALIAAGSSLSVLALLFAL 756
Query: 387 ANREGQRSPQNSQGLLSILSFKG-KFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSK 445
+ +IL+ +G +++ A ++ D KY IG G HG VYRA L S
Sbjct: 757 FLVLCRCKRGTKTEDANILAEEGLSLLLNKVLAATDNLDDKYIIGRGAHGVVYRASLGSG 816
Query: 446 EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKR 505
E AVKK + ++ I + EIE + +RHRN+++ F +++Y+Y+
Sbjct: 817 EEYAVKKL---IFAEHIRANQNMKREIETIGLVRHRNLIRLERFWMRKEDGLMLYQYMPN 873
Query: 506 GSLATNLSNDAAAEEL-------------------------------DISSKNVLLDLEH 534
GSL L E + DI +N+L+D +
Sbjct: 874 GSLHDVLHRGNQGEAVLDWSARFNIALGISHGLAYLHHDCHPPIIHRDIKPENILMDSDM 933
Query: 535 KAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD--YR----KKCDVYSFRVLALEVIKGK 588
+ H+ DFG+A+ L + + + + GT Y+AP+ Y+ K+ DVYS+ V+ LE++ GK
Sbjct: 934 EPHIGDFGLARILDDSTVSTATVTGTTGYIAPENAYKTVRSKESDVYSYGVVLLELVTGK 993
Query: 589 HP--RGF---------VSSILPS---------PSVINMRLDEMLDPRLPPPSPDVQGKLI 628
R F V S+L S P V +DE+LD +L + + I
Sbjct: 994 RALDRSFPEDINIVSWVRSVLSSYEDEDDTAGPIVDPKLVDELLDTKL-------REQAI 1046
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQL 655
+ ++A C D PE+RP+M+ + + L
Sbjct: 1047 QVTDLALRCTDKRPENRPSMRDVVKDL 1073
|
Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (689), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 222/737 (30%), Positives = 350/737 (47%), Gaps = 100/737 (13%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
NL+NL+EL L N +TG IP+ N LV+ + NQ G +P +G L L ++
Sbjct: 345 NLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQ 404
Query: 61 NNLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N L G+IP + L L L N+ TG+L + + L ++++ N G IP +
Sbjct: 405 NKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIG 464
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
NC +LVR+ L N + G I + G NL+FLD+S+NN G + C +L LN+S
Sbjct: 465 NCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSN 524
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
N + +PL + +L+ L D+S N + GKIP G L SL +LIL N G +PS +G
Sbjct: 525 NTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLG 584
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHY-LDLSKYQFIQELPKELGKLVQLSELELS 298
T L+ L+LS+N S IPE L ++ L L+LS +P+ + L +LS L++S
Sbjct: 585 HCTNLQLLDLSSNNISGTIPEELFDIQDLDIALNLSWNSLDGFIPERISALNRLSVLDIS 644
Query: 299 HNFLGREIPSQICSMEC-----------------CEVFCTITNSVPTNNFLNCQKGY-AC 340
HN L ++ S + +E +VF + + N C KG+ +C
Sbjct: 645 HNMLSGDL-SALSGLENLVSLNISHNRFSGYLPDSKVFRQLIGAEMEGNNGLCSKGFRSC 703
Query: 341 QKVVLTFQQFSTSAKICPNLSRLP-------TNHHPQSGCISVIAYVPIIWDQANREGQR 393
V Q +T + + R+ T G ++VI +I D + E
Sbjct: 704 --FVSNSSQLTTQRGVHSHRLRIAIGLLISVTAVLAVLGVLAVIRAKQMIRDDNDSETGE 761
Query: 394 SPQNSQGLLSILSF-KGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKK 452
+ Q F K F +++ + + + IG G G VY+AE+P++E +AVKK
Sbjct: 762 NLWTWQ----FTPFQKLNFTVEHVLKCLVEGNV---IGKGCSGIVYKAEMPNREVIAVKK 814
Query: 453 --------FNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLK 504
N S + D F AE++ L IRH+NIV+F G C + +L+Y+Y+
Sbjct: 815 LWPVTVPNLNEKTKSSGVRDS--FSAEVKTLGSIRHKNIVRFLGCCWNKNTRLLMYDYMS 872
Query: 505 RGSLATNLSNDA----------------AAEEL--------------DISSKNVLLDLEH 534
GSL + L + AA+ L DI + N+L+ +
Sbjct: 873 NGSLGSLLHERSGVCSLGWEVRYKIILGAAQGLAYLHHDCVPPIVHRDIKANNILIGPDF 932
Query: 535 KAHVSDFGIAKFLKPD----SSNWSALVGTYRYVAPDY------RKKCDVYSFRVLALEV 584
+ ++ DFG+AK + SSN + G+Y Y+AP+Y +K DVYS+ V+ LEV
Sbjct: 933 EPYIGDFGLAKLVDDGDFARSSN--TIAGSYGYIAPEYGYSMKITEKSDVYSYGVVVLEV 990
Query: 585 IKGKHPRGFVSSILPS-----PSVINMRLDEMLDPRLPP-PSPDVQGKLISIMEVAFSCL 638
+ GK P + +P V +R +++D L P +V+ +++ + VA C+
Sbjct: 991 LTGKQP---IDPTIPDGLHIVDWVKKIRDIQVIDQGLQARPESEVE-EMMQTLGVALLCI 1046
Query: 639 DVSPESRPTMQTITQQL 655
+ PE RPTM+ + L
Sbjct: 1047 NPIPEDRPTMKDVAAML 1063
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (687), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 223/710 (31%), Positives = 333/710 (46%), Gaps = 90/710 (12%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
+++L+ + L +N TG IPT LK+L L L N+ G++P +G + L L L+EN
Sbjct: 286 ISSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKLYGAIPEFIGEMPELEVLQLWEN 345
Query: 62 NLSGSIPPSVG-NLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N +GSIP +G N L +L L +N TG L N+C L +I GN G IP L
Sbjct: 346 NFTGSIPQKLGENGRLVILDLSSNKLTGTLPPNMCSGNRLMTLITLGNFLFGSIPDSLGK 405
Query: 121 CPNLVRISLEGNNMRGTI-SEAFGIYLNLTFLDISDNNFFGEIA-SNWGKCPKLSTLNVS 178
C +L RI + N + G+I E FG+ L+ +++ DN GE+ S G L +++S
Sbjct: 406 CESLTRIRMGENFLNGSIPKELFGLP-KLSQVELQDNYLTGELPISGGGVSGDLGQISLS 464
Query: 179 MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI 238
N ++ S+P IGNLS + + L N G IP E G+L L+KL N G + EI
Sbjct: 465 NNQLSGSLPAAIGNLSGVQKLLLDGNKFSGSIPPEIGRLQQLSKLDFSHNLFSGRIAPEI 524
Query: 239 GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELS 298
L F++LS N S IP L + L+YL+LS+ + +P + + L+ ++ S
Sbjct: 525 SRCKLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIASMQSLTSVDFS 584
Query: 299 HNFLGREIPSQICSMECCEVFCTITNSVPTNNFLN-CQKGYACQKVVLTFQQFSTSAKIC 357
+N L +PS + NS +L C KG V + S + K+
Sbjct: 585 YNNLSGLVPST-GQFSYFNYTSFVGNSHLCGPYLGPCGKGTHQSHV----KPLSATTKLL 639
Query: 358 PNLSRLPTNHHPQSGCISVIAYVPIIWDQANREGQRSPQNSQGLLSILSFKGKFDYVEII 417
L C V A V II ++ R + L F D ++ +
Sbjct: 640 LVLG--------LLFCSMVFAIVAIIKARSLRNASEAKAWRLTAFQRLDFTCD-DVLDSL 690
Query: 418 RAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
+ N IG G G VY+ +P + +AVK+ + S + F AEI+ L +
Sbjct: 691 KEDN------IIGKGGAGIVYKGTMPKGDLVAVKRLAT--MSHGSSHDHGFNAEIQTLGR 742
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDA---------------AAEEL- 521
IRHR+IV+ GFCS+ ++L+YEY+ GSL L AA+ L
Sbjct: 743 IRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWNTRYKIALEAAKGLC 802
Query: 522 -------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAP 566
D+ S N+LLD +AHV+DFG+AKFL+ ++ SA+ G+Y Y+AP
Sbjct: 803 YLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAP 862
Query: 567 DYR------KKCDVYSFRVLALEVIKGKHPRG----------FVSSILPSP-----SVIN 605
+Y +K DVYSF V+ LE+I GK P G +V S+ S VI+
Sbjct: 863 EYAYTLKVDEKSDVYSFGVVLLELITGKKPVGEFGDGVDIVQWVRSMTDSNKDCVLKVID 922
Query: 606 MRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+RL + P +V + VA C++ RPTM+ + Q L
Sbjct: 923 LRLSSV-------PVHEVT----HVFYVALLCVEEQAVERPTMREVVQIL 961
|
Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 667 | ||||||
| 225456159 | 1038 | PREDICTED: probable LRR receptor-like se | 0.974 | 0.626 | 0.432 | 1e-153 | |
| 147772402 | 996 | hypothetical protein VITISV_022117 [Viti | 0.974 | 0.652 | 0.430 | 1e-150 | |
| 225456161 | 1037 | PREDICTED: probable LRR receptor-like se | 0.973 | 0.625 | 0.428 | 1e-150 | |
| 359491509 | 1032 | PREDICTED: probable LRR receptor-like se | 0.967 | 0.625 | 0.419 | 1e-145 | |
| 255545702 | 1008 | receptor protein kinase, putative [Ricin | 0.979 | 0.647 | 0.435 | 1e-145 | |
| 297813345 | 1019 | hypothetical protein ARALYDRAFT_489780 [ | 0.976 | 0.638 | 0.404 | 1e-141 | |
| 297846642 | 1007 | hypothetical protein ARALYDRAFT_891227 [ | 0.971 | 0.643 | 0.413 | 1e-139 | |
| 186511602 | 1045 | Leucine-rich repeat-containing protein [ | 0.976 | 0.622 | 0.405 | 1e-138 | |
| 297846638 | 1123 | hypothetical protein ARALYDRAFT_473694 [ | 0.971 | 0.577 | 0.417 | 1e-138 | |
| 7267528 | 1027 | receptor protein kinase-like protein [Ar | 0.976 | 0.633 | 0.404 | 1e-138 |
| >gi|225456159|ref|XP_002278561.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 319/737 (43%), Positives = 430/737 (58%), Gaps = 87/737 (11%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+L+ L LHL N L+G IP E NLKSLV L L NQ GS+P+S+GNL++L LFL +
Sbjct: 303 DLSGLTLLHLYANQLSGPIPQEIGNLKSLVDLELSENQLNGSIPTSLGNLTNLEILFLRD 362
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N LSG IP +G L L VL ++ N G+L IC+ G+L R V NH GPIPK L+
Sbjct: 363 NQLSGYIPQEIGKLHKLVVLEIDTNQLFGSLPEGICQAGSLVRFAVSDNHLSGPIPKSLK 422
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
NC NL R +GN + G ISE G NL F+D+S N F GE++ NWG+CP+L L ++
Sbjct: 423 NCRNLTRALFQGNRLTGNISEVVGDCPNLEFIDLSYNRFHGELSHNWGRCPQLQRLEIAG 482
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
NNIT SIP + G + L DLS NH+VG+IPK+ G L SL LIL NQL G +P E+G
Sbjct: 483 NNITGSIPEDFGISTNLTLLDLSSNHLVGEIPKKMGSLTSLLGLILNDNQLSGSIPPELG 542
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
SL+ LE+L+LS NR + IPE LG+ L LHYL+LS + +P ++GKL LS+L+LSH
Sbjct: 543 SLSHLEYLDLSANRLNGSIPEHLGDCLDLHYLNLSNNKLSHGIPVQMGKLSHLSQLDLSH 602
Query: 300 NFLGREIPSQICSMECCEVFCTITNS-----------VPTNNFLNCQKGYACQKVV---- 344
N L IP QI ++ E+ N+ +P ++++ +
Sbjct: 603 NLLAGGIPPQIQGLQSLEMLDLSHNNLCGFIPKAFEDMPALSYVDISYNQLQGPIPHSNA 662
Query: 345 ---LTFQQFSTSAKICPNLSRLP-------TNHHPQSGCISVI---------------AY 379
T + + +C N+ L + P V+ A+
Sbjct: 663 FRNATIEVLKGNKDLCGNVKGLQPCKYGFGVDQQPVKKSHKVVFIIIFPLLGALVLLFAF 722
Query: 380 VPIIWDQANREGQRSPQNSQG-----LLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRH 434
+ I RE R+P+ +G L SI +F G+ Y EII+A DFD YCIG G H
Sbjct: 723 IGIFLIAERRE--RTPEIEEGDVQNDLFSISNFDGRTMYEEIIKATKDFDPMYCIGKGGH 780
Query: 435 GSVYRAELPSKEFLAVKKFNSPLPSD-QIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA 493
GSVY+AELPS +AVKK + PSD ++A+QK+F EI ALT+I+HRNIVK GFCSH
Sbjct: 781 GSVYKAELPSSNIVAVKKLH---PSDTEMANQKDFLNEIRALTEIKHRNIVKLLGFCSHP 837
Query: 494 RHSILIYEYLKRGSLATNLSNDAAAE-----------------------------ELDIS 524
RH L+YEYL+RGSLAT LS + A + D+S
Sbjct: 838 RHKFLVYEYLERGSLATILSREEAKKLGWATRVNIIKGVAHALAYMHHDCSPPIVHRDVS 897
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFR 578
S N+LLD +++AH+SDFG AK LK DSSN S L GT+ Y+AP+ +K DV+SF
Sbjct: 898 SNNILLDSQYEAHISDFGTAKLLKLDSSNQSILAGTFGYLAPELAYTMKVTEKTDVFSFG 957
Query: 579 VLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCL 638
V+ALEVIKG+HP + S+ SP N+ L++MLDPRLPP +P +G++I+I++ A CL
Sbjct: 958 VIALEVIKGRHPGDQILSLSVSPEKDNIALEDMLDPRLPPLTPQDEGEVIAILKQAIECL 1017
Query: 639 DVSPESRPTMQTITQQL 655
+P+SRPTMQT++Q L
Sbjct: 1018 KANPQSRPTMQTVSQML 1034
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147772402|emb|CAN73988.1| hypothetical protein VITISV_022117 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 317/737 (43%), Positives = 430/737 (58%), Gaps = 87/737 (11%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+L+ L LHL N L+G IP E NLKSLV L L NQ GS+P+S+GNL++L LFL +
Sbjct: 261 DLSGLTLLHLYANQLSGPIPQEIGNLKSLVDLELSENQLNGSIPTSLGNLTNLETLFLRD 320
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N LSG IP +G L L VL ++ N G+L IC+ G+LER V NH GPIPK L+
Sbjct: 321 NQLSGYIPQEIGKLHKLVVLEIDTNQLFGSLPEGICQGGSLERFTVSDNHLSGPIPKSLK 380
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
NC NL R GN + G ISE G NL ++++S N+F GE++ NWG+ P+L L ++
Sbjct: 381 NCKNLTRALFGGNQLTGNISEVVGDCPNLEYINVSYNSFHGELSHNWGRYPRLQRLEMAW 440
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
NNIT SIP + G + L DLS NH+ G+IPK+ G + SL KLIL NQL G++P E+G
Sbjct: 441 NNITGSIPEDFGISTDLTLLDLSSNHLFGEIPKKMGSVTSLWKLILNDNQLSGNIPPELG 500
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
SL L +L+LS NR + IPE LG+ L L+YL+LS + +P ++GKL LS+L+LSH
Sbjct: 501 SLADLGYLDLSANRLNGSIPEHLGDCLGLNYLNLSNNKLSHGIPVQMGKLGHLSQLDLSH 560
Query: 300 NFLGREIPSQICSMECCEVFCTITNSVPTNNFLNCQKGYACQKVVLTFQQFS-------- 351
N L +IP QI ++ E N++ ++ V +++ Q
Sbjct: 561 NLLTGDIPPQIEGLQSLENLNLSHNNLSGFIPKAFEEMLGLSDVDISYNQLQGPIPNSKA 620
Query: 352 ----------TSAKICPNLSRL-------PTNHHPQSGCISVI---------------AY 379
+ +C N+ RL + P V+ A+
Sbjct: 621 FRDATIEALKGNKGLCGNVKRLRPCKYGSGVDQQPVKKSHKVVFIIIFPLLGALVLLFAF 680
Query: 380 VPIIWDQANREGQRSPQNSQG-----LLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRH 434
+ I A RE R+P+ +G L SI +F G+ Y EII+A DFD YCIG G H
Sbjct: 681 IGIFLIAARRE--RTPEIKEGEVQNDLFSISTFDGRTMYEEIIKATKDFDPMYCIGKGGH 738
Query: 435 GSVYRAELPSKEFLAVKKFNSPLPSD-QIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA 493
GSVY+AELPS +AVKK + PSD ++A+QK+F EI ALT+I+HRNIVK GFCSH
Sbjct: 739 GSVYKAELPSSNIVAVKKLH---PSDTEMANQKDFLNEIRALTEIKHRNIVKLLGFCSHP 795
Query: 494 RHSILIYEYLKRGSLATNLSNDAAAE-----------------------------ELDIS 524
RH L+YEYL+RGSLAT LS + A + DIS
Sbjct: 796 RHKFLVYEYLERGSLATILSREEAKKLGWATRVNIIKGVAHALAYMHHDCSPPIVHRDIS 855
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFR 578
S N+LLD +++AH+SDFG AK LK DSSN S L GT+ Y+AP+ +K DV+SF
Sbjct: 856 SNNILLDSQYEAHISDFGTAKLLKLDSSNQSILAGTFGYLAPELAYTMKVTEKTDVFSFG 915
Query: 579 VLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCL 638
V+ALEVIKG+HP + S+ SP N+ L++MLDPRLPP +P +G++I+I++ A CL
Sbjct: 916 VIALEVIKGRHPGDQILSLSVSPEKDNIALEDMLDPRLPPLTPQDEGEVIAIIKQATECL 975
Query: 639 DVSPESRPTMQTITQQL 655
+P+SRPTMQT++Q L
Sbjct: 976 KANPQSRPTMQTVSQML 992
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456161|ref|XP_002278590.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 316/737 (42%), Positives = 432/737 (58%), Gaps = 88/737 (11%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+L+ L LHL N L+G IP E NLKSLV L L NQ GS+P+S+GNL++L LFL +
Sbjct: 303 DLSGLTLLHLYANQLSGPIPQEIGNLKSLVDLELSENQLNGSIPTSLGNLTNLEILFLRD 362
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N LSG P +G L L VL ++ N G+L IC+ G+LER V NH GPIPK L+
Sbjct: 363 NRLSGYFPQEIGKLHKLVVLEIDTNQLFGSLPEGICQGGSLERFTVSDNHLSGPIPKSLK 422
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
NC NL R +GN + G +SE G NL F+D+S N F GE++ NWG+CP+L L ++
Sbjct: 423 NCRNLTRALFQGNRLTGNVSEVVGDCPNLEFIDLSYNRFHGELSHNWGRCPQLQRLEIAG 482
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
NNIT SIP + G + L DLS NH+VG+IPK+ G L SL LIL NQL G +P E+G
Sbjct: 483 NNITGSIPEDFGISTNLILLDLSSNHLVGEIPKKMGSLTSLLGLILNDNQLSGSIPPELG 542
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
SL+ LE+L+LS NR + IPE LG+ L LHYL+LS + +P ++GKL LS+L+LSH
Sbjct: 543 SLSHLEYLDLSANRLNGSIPEHLGDCLDLHYLNLSNNKLSHGIPVQMGKLSHLSQLDLSH 602
Query: 300 NFLGREIPSQICSMECCEVFCTITNS-----------VPTNNFLNCQKGYACQKVV---- 344
N L IP+QI +E E+ N+ +P ++++ +
Sbjct: 603 NLLTGGIPAQIQGLESLEMLDLSHNNLCGFIPKAFEDMPALSYVDISYNQLQGPIPHSNA 662
Query: 345 ---LTFQQFSTSAKICPNLSRLP-------TNHHPQSGCISVI---------------AY 379
T + + +C N+ L + P V+ A+
Sbjct: 663 FRNATIEVLKGNKDLCGNVKGLQPCKYGFGVDQQPVKKSHKVVFIIIFPLLGALVLLSAF 722
Query: 380 VPIIWDQANREGQRSPQNSQG-----LLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRH 434
+ I RE R+P+ +G LLSI +F G+ Y EII+A DFD YCIG G H
Sbjct: 723 IGIFLIAERRE--RTPEIEEGDVQNNLLSISTFDGRAMYEEIIKATKDFDPMYCIGKGGH 780
Query: 435 GSVYRAELPSKEFLAVKKFNSPLPSD-QIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA 493
GSVY+AELPS +AVKK + PSD +A+QK+F ++ A+T+I+HRNIV+ GFCS+
Sbjct: 781 GSVYKAELPSGNIVAVKKLH---PSDMDMANQKDFLNKVRAMTEIKHRNIVRLLGFCSYP 837
Query: 494 RHSILIYEYLKRGSLATNLSNDAAAE-----------------------------ELDIS 524
RHS L+YEYL+RGSLAT LS + A + DIS
Sbjct: 838 RHSFLVYEYLERGSLATILSREEAKKLGWATRVKIIKGVAHALSYMHHDCSPPIVHRDIS 897
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDY------RKKCDVYSFR 578
S N+LLD +++AH+S+ G AK LK DSSN S L GT YVAP++ +K DVYSF
Sbjct: 898 SNNILLDSQYEAHISNLGTAKLLKVDSSNQSKLAGTVGYVAPEHAYTMKVTEKTDVYSFG 957
Query: 579 VLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCL 638
V+ALEVIKG+HP + SI SP N+ L +MLDPRLPP +P +G++++I+++A +CL
Sbjct: 958 VIALEVIKGRHPGDQILSISVSPEK-NIVLKDMLDPRLPPLTPQDEGEVVAIIKLATACL 1016
Query: 639 DVSPESRPTMQTITQQL 655
+ +P+SRPTM+ I+Q L
Sbjct: 1017 NANPQSRPTMEIISQML 1033
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491509|ref|XP_002278522.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 310/739 (41%), Positives = 424/739 (57%), Gaps = 94/739 (12%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+L+ L+ L L DN L+G IP E NL+SLV L + NQ GS+P+ +GNL +L L+L +
Sbjct: 300 DLSGLKSLQLFDNQLSGPIPQEMGNLRSLVDLEISQNQLNGSIPTLLGNLINLEILYLRD 359
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N LS SIPP +G L L L ++ N +G L IC+ G+LE V N GPIP+ L+
Sbjct: 360 NKLSSSIPPEIGKLHKLVELEIDTNQLSGFLPEGICQGGSLENFTVFDNFLIGPIPESLK 419
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
NCP+L R L+GN + G ISEAFG+ NL +++S+N F+GE++ NWG+C KL L+++
Sbjct: 420 NCPSLARARLQGNQLTGNISEAFGVCPNLYHINLSNNKFYGELSQNWGRCHKLQWLDIAG 479
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
NNIT SIP + G + L +LS NH+VG+IPK+ G ++SL KLIL N+L G++P E+G
Sbjct: 480 NNITGSIPADFGISTQLTVLNLSSNHLVGEIPKKLGSVSSLWKLILNDNRLSGNIPPELG 539
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGK----------- 288
SL L +L+LS NR + IPE LGN L L+YL+LS + +P ++GK
Sbjct: 540 SLADLGYLDLSGNRLNGSIPEHLGNCLDLNYLNLSNNKLSHGIPVQMGKLSHLSLLDLSH 599
Query: 289 -------------LVQLSELELSHNFLGREIPSQICSM----ECCEVFCTITNSVPTNNF 331
L L +L LSHN L IP M + + + S+P +
Sbjct: 600 NLLTGEIPSQIQGLQSLEKLNLSHNNLSGIIPKAFEDMHGLWQVDISYNDLQGSIPNSE- 658
Query: 332 LNCQKGYACQKVVLTFQQFSTSA-------KICPNLSRLPTNHHPQ--------SGCISV 376
A Q V + Q + + C N S H + +
Sbjct: 659 -------AFQNVTIEVLQGNKGLCGSVKGLQPCENRSATKGTHKAVFIIIFSLLGALLIL 711
Query: 377 IAYVPI-IWDQANREGQRSPQ---NSQGLLSILSFKGKFDYVEIIRAINDFDAKYCIGSG 432
A++ I + Q R + ++ L SI +F G+ Y II A DFD YCIG G
Sbjct: 712 SAFIGISLISQGRRNAKMEKAGDVQTENLFSISTFDGRTTYEAIIEATKDFDPMYCIGEG 771
Query: 433 RHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH 492
HGSVY+AELPS +AVKK + +A QK+F EI ALT+I+HRNIVK GFCSH
Sbjct: 772 GHGSVYKAELPSGNIVAVKKLHRF--DIDMAHQKDFVNEIRALTEIKHRNIVKLLGFCSH 829
Query: 493 ARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------------D 522
+RHS L+YEYL+RGSL T LS + A+E+ D
Sbjct: 830 SRHSFLVYEYLERGSLGTILSKELQAKEVGWGTRVNIIKGVSHALSYLHHDCVPPIVHRD 889
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYS 576
ISS NVLLD +++AHVSDFG AKFLK DSSNWS L GTY YVAP+ +KCDVYS
Sbjct: 890 ISSNNVLLDSKYEAHVSDFGTAKFLKLDSSNWSTLAGTYGYVAPELAYTMKVTEKCDVYS 949
Query: 577 FRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFS 636
F VLALEV++G+HP +SS+ SP N+ L ++LDPRLPPP+ + ++ S++++A +
Sbjct: 950 FGVLALEVMRGRHPGDLISSLSDSPGKDNVVLKDVLDPRLPPPTFRDEAEVTSVIQLATA 1009
Query: 637 CLDVSPESRPTMQTITQQL 655
CL+ SP+SRPTMQ ++Q L
Sbjct: 1010 CLNGSPQSRPTMQMVSQML 1028
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255545702|ref|XP_002513911.1| receptor protein kinase, putative [Ricinus communis] gi|223546997|gb|EEF48494.1| receptor protein kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 320/735 (43%), Positives = 437/735 (59%), Gaps = 82/735 (11%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
LT+L LHL N L+G IP E NL SL L L N+ GS+P+S+GNLS L LFL N
Sbjct: 275 LTSLTILHLYQNQLSGTIPKELGNLNSLSNLELSENKLTGSIPASLGNLSRLELLFLKNN 334
Query: 62 NLSGSIPPSVGNLMLTVLALEN-NHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
LSG IP + NL L N TG L NIC++ L+ V N GPIPK +R+
Sbjct: 335 QLSGPIPEQIANLSKLSLLQLQSNQLTGYLPQNICQSKVLQNFSVNDNRLEGPIPKSMRD 394
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
C +LVR+ LEGN G ISE FG+Y L F+DI N F GEI+S WG CP L TL +S N
Sbjct: 395 CKSLVRLHLEGNQFIGNISEDFGVYPYLQFVDIRYNKFHGEISSKWGMCPHLGTLLISGN 454
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240
NI+ IP EIGN + L D S N +VG+IPKE GKL SL ++ L NQL +PSE GS
Sbjct: 455 NISGIIPPEIGNAARLQGLDFSSNQLVGRIPKELGKLTSLVRVNLEDNQLSDGVPSEFGS 514
Query: 241 LTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN 300
LT LE L+LS NRF+ IP ++GNL+KL+YL+LS QF QE+P +LGKLV LS+L+LS N
Sbjct: 515 LTDLESLDLSANRFNQSIPGNIGNLVKLNYLNLSNNQFSQEIPIQLGKLVHLSKLDLSQN 574
Query: 301 FLGREIPSQICSMECCEVFCTITNSVPTNNFLNCQKGYACQKVVLTF------------- 347
FL EIPS++ M+ EV N++ + ++ + + +++
Sbjct: 575 FLIGEIPSELSGMQSLEVLNLSRNNLSGFIPGDLKEMHGLSSIDISYNKLEGPVPDNKAF 634
Query: 348 -----QQFSTSAKICPNLSRL----PTNHH-----------------PQSGCISVIAYVP 381
+ F + +C ++ L P++ P G +++++
Sbjct: 635 QNSSIEAFQGNKGLCGHVQGLQPCKPSSTEQGSSIKFHKRLFLVISLPLFGAFLILSFLG 694
Query: 382 IIWDQANR-----EGQRSPQNSQGLLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRHGS 436
+++ Q+ R E ++S Q S+ +L I SF GK + EII A + F+ YCIG G GS
Sbjct: 695 VLFFQSKRSKEALEAEKSSQESEEILLITSFDGKSMHDEIIEATDSFNDIYCIGKGGCGS 754
Query: 437 VYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496
VY+A+L S +AVKK + + + QKEF++EI ALT+I+HRNIVKFYGFCS++ +S
Sbjct: 755 VYKAKLSSGSTVAVKKLHQSHDAWK-PYQKEFWSEIRALTEIKHRNIVKFYGFCSYSAYS 813
Query: 497 ILIYEYLKRGSLATNLSNDAAAEEL------------------------------DISSK 526
L+YE +++GSLAT L ++ AA+EL DISSK
Sbjct: 814 FLVYECIEKGSLATILRDNEAAKELEWFKRANIIKGVANALSYMHHDCSPPIVHRDISSK 873
Query: 527 NVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVL 580
N+LLD E++A VSDFGIA+ L DSS+ +AL GT+ Y+AP+ +KCDVYSF VL
Sbjct: 874 NILLDSENEARVSDFGIARILNLDSSHRTALAGTFGYMAPELAYSIVVTEKCDVYSFGVL 933
Query: 581 ALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDV 640
ALEVI GKHP +SSI S S M L+ ++D RLP PSP+VQ +L++I+ +AF+CL+
Sbjct: 934 ALEVINGKHPGEIISSISSSSSTRKMLLENIVDLRLPFPSPEVQVELVNILNLAFTCLNS 993
Query: 641 SPESRPTMQTITQQL 655
+P+ RPTM+ I L
Sbjct: 994 NPQVRPTMEMICHML 1008
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297813345|ref|XP_002874556.1| hypothetical protein ARALYDRAFT_489780 [Arabidopsis lyrata subsp. lyrata] gi|297320393|gb|EFH50815.1| hypothetical protein ARALYDRAFT_489780 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 296/732 (40%), Positives = 426/732 (58%), Gaps = 81/732 (11%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
N+ L LHL N L+G IP E ++++++ L + N+ G +P S G L+ L +LFL +
Sbjct: 285 NIKTLAILHLYLNQLSGSIPPELGDMEAMIDLEISENKLTGPVPDSFGKLTVLEWLFLRD 344
Query: 61 NNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N LSG IPP + N LTVL L+ N+FTG L ICR+G LE + + NHF GP+PK LR
Sbjct: 345 NQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRSGKLENLTLDDNHFEGPVPKSLR 404
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
NC +LVR+ +GN+ G IS+AFG+Y L F+D+S+NNF G++++NW + KL +S
Sbjct: 405 NCKSLVRVRFKGNHFSGDISDAFGVYPTLNFIDLSNNNFHGQLSANWEQSTKLVAFILSN 464
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
N+I+ +IP EI N++ LN+ DLS N I G++P+ +N ++KL L GNQL G +PS I
Sbjct: 465 NSISGAIPPEIWNMTQLNQLDLSFNRITGELPESISNINRISKLQLNGNQLSGKIPSGIR 524
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
LT LE+L+LS+N+F IP +L NL +L+Y++LS+ Q +P+ L KL QL L+LS+
Sbjct: 525 LLTNLEYLDLSSNQFGFEIPATLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSY 584
Query: 300 NFLGREIPSQICSMECCEVF----CTITNSVPTN-------------------------- 329
N L EI SQ S++ E ++ +PT+
Sbjct: 585 NQLDGEISSQFGSLQNLERLDLSHNNLSGQIPTSFKDMLALTHIDVSHNNLQGPIPDNAA 644
Query: 330 ------NFLNCQKGYACQKVVLTFQQFSTSAKICPNLSRLPTNHHPQSGCI---SVIAYV 380
N L L ++S K + + + P G I SV A +
Sbjct: 645 FRNASPNALEGNNDLCGDNKALKPCSITSSKKSHKDRNLIIYILVPIIGAIIILSVCAGI 704
Query: 381 PIIWDQANREGQRSPQNSQG--LLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVY 438
I + + ++ + + + G LSI SF GK Y EII+A +FD+KY IG+G HG VY
Sbjct: 705 FICFRKRTKQIEENSDSESGGETLSIFSFDGKVRYQEIIKATGEFDSKYLIGTGGHGKVY 764
Query: 439 RAELPSKEFLAVKKFNSPLPSD--QIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496
+A+LP+ +AVKK N S + ++EF EI ALT+IRHRN+VK +GFCSH R++
Sbjct: 765 KAKLPNA-IMAVKKLNETTDSSITNPSTKQEFLNEIRALTEIRHRNVVKLFGFCSHRRNT 823
Query: 497 ILIYEYLKRGSLATNLSNDAAAEEL------------------------------DISSK 526
L+YEY++RGSL L ND A++L DISS
Sbjct: 824 FLVYEYMERGSLRKVLENDDEAKKLDWGKRINVVKGVADALSYMHHDRSPAIVHRDISSG 883
Query: 527 NVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVL 580
N+LL +++A +SDFG AK LKPDSSNWSA+ GTY YVAP+ +KCDVYSF VL
Sbjct: 884 NILLGEDYEAKISDFGTAKLLKPDSSNWSAVAGTYGYVAPELAYAMKVTEKCDVYSFGVL 943
Query: 581 ALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDV 640
LEVIKG+HP VS++ SP ++ L + D RLP P+P+++ +++ I++VA CL
Sbjct: 944 TLEVIKGEHPGDLVSTLSSSPPDTSLSLKTISDHRLPEPTPEIKEEVLEILKVALMCLHS 1003
Query: 641 SPESRPTMQTIT 652
P++RPTM +I+
Sbjct: 1004 DPQARPTMLSIS 1015
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297846642|ref|XP_002891202.1| hypothetical protein ARALYDRAFT_891227 [Arabidopsis lyrata subsp. lyrata] gi|297337044|gb|EFH67461.1| hypothetical protein ARALYDRAFT_891227 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 305/737 (41%), Positives = 424/737 (57%), Gaps = 89/737 (12%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
NL NL L+L NY+TG+IP E N++S++ L L N GS+PSS GN + L+ L+L
Sbjct: 271 NLKNLTVLYLHQNYITGVIPPELGNMESMIDLELSQNNLTGSIPSSFGNFTKLKSLYLSY 330
Query: 61 NNLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N+LSG+IPP V N LT L L N+F+G L NIC+ G L+ + + NH +GPIPK LR
Sbjct: 331 NHLSGAIPPGVANSSELTELQLAINNFSGFLPKNICKGGKLQFIALYDNHLKGPIPKSLR 390
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
+C +L+R GN G ISEAFG+Y +L F+D+S N F GEI+SNW K PKL L +S
Sbjct: 391 DCKSLIRAKFVGNKFVGNISEAFGVYPDLNFIDLSHNKFNGEISSNWQKSPKLGALIMSN 450
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
NNIT +IP EI N+ L E DLS N++ G++P+ G L +L++L L GNQL G +P+ I
Sbjct: 451 NNITGAIPPEIWNMKQLGELDLSANNLSGELPEAIGNLTNLSRLRLNGNQLSGRVPAGIS 510
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
LT LE L+LS+NRFSS IP++ + LKLH ++LS+ F +P L KL QL+ L+LSH
Sbjct: 511 FLTNLESLDLSSNRFSSQIPQTFDSFLKLHEMNLSRNNFDGRIPG-LTKLTQLTHLDLSH 569
Query: 300 NFLGREIPSQICSMECCEVFCTITNS----VPTN-------NFLNCQKGYACQKVV--LT 346
N L EIPSQ+ S++ + N+ +PT F++ +
Sbjct: 570 NQLDGEIPSQLSSLQSLDKLNLSHNNLSGFIPTTFESMKALTFIDISNNKLEGPLPDNPA 629
Query: 347 FQQFSTSA-----KICPNLSRLPTNHHP----------QSGCISVIAYVPI--------- 382
FQ ++ A +C N+ + P ++G + V VPI
Sbjct: 630 FQNATSDALEGNRGLCSNIPKQRLKSCPITSGGFQKPKKNGNLLVWILVPILGALVILSI 689
Query: 383 --------IWDQANREGQRSPQNSQGLLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRH 434
I + G+ + + +SI S GKF Y +II + N+FD +Y IGSG +
Sbjct: 690 CAGAFTYYIRKRKPHNGRNTDSETGENMSIFSVDGKFKYQDIIESTNEFDQRYLIGSGGY 749
Query: 435 GSVYRAELPSKEFLAVKKFNSPLPSDQIAD---QKEFFAEIEALTKIRHRNIVKFYGFCS 491
VY+A LP +AVK+ + + ++I+ ++EF E+ ALT+IRHRN+VK +GFCS
Sbjct: 750 SKVYKANLPDA-IVAVKRLHDTI-DEEISKPVVKQEFLNEVRALTEIRHRNVVKLFGFCS 807
Query: 492 HARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------------ 521
H RH+ LIYEY+++GSL L+N+ A+ L
Sbjct: 808 HRRHTFLIYEYMEKGSLNKLLANEEEAKRLTWTKRINIVKGVAHALSYMHHDRSTPIVHR 867
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDY------RKKCDVY 575
DISS N+LLD ++ A +SDFG AK LK DSSNWSA+ GTY YVAP++ +KCDVY
Sbjct: 868 DISSGNILLDNDYTAKISDFGTAKLLKTDSSNWSAVAGTYGYVAPEFAYTMKVTEKCDVY 927
Query: 576 SFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF 635
SF VL LEVI GKHP V+S+ SP + L + D R+ P + KLI ++EVA
Sbjct: 928 SFGVLILEVIMGKHPGDLVASLSSSPGET-LSLRSISDERILEPRGQNREKLIKMVEVAL 986
Query: 636 SCLDVSPESRPTMQTIT 652
SCL P+SRPTM +I+
Sbjct: 987 SCLQADPQSRPTMLSIS 1003
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186511602|ref|NP_849538.2| Leucine-rich repeat-containing protein [Arabidopsis thaliana] gi|281185491|sp|Q8VZG8.3|Y4885_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At4g08850; Flags: Precursor gi|18086327|gb|AAL57627.1| AT4g08850/T32A17_160 [Arabidopsis thaliana] gi|224589610|gb|ACN59338.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|332657282|gb|AEE82682.1| Leucine-rich repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 298/735 (40%), Positives = 419/735 (57%), Gaps = 84/735 (11%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
N+ L LHL N L G IP E ++S++ L + N+ G +P S G L++L +LFL +
Sbjct: 308 NIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRD 367
Query: 61 NNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N LSG IPP + N LTVL L+ N+FTG L ICR G LE + + NHF GP+PK LR
Sbjct: 368 NQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLR 427
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
+C +L+R+ +GN+ G ISEAFG+Y L F+D+S+NNF G++++NW + KL +S
Sbjct: 428 DCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSN 487
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
N+IT +IP EI N++ L++ DLS N I G++P+ +N ++KL L GN+L G +PS I
Sbjct: 488 NSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIR 547
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLS------ 293
LT LE+L+LS+NRFSS IP +L NL +L+Y++LS+ Q +P+ L KL QL
Sbjct: 548 LLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSY 607
Query: 294 ------------------ELELSHNFLGREIPSQICSMECCEVFCTITNS----VPTNN- 330
L+LSHN L +IP M N+ +P N
Sbjct: 608 NQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAA 667
Query: 331 FLNCQ-KGYACQKVVLTFQQFSTSAKICPNLSRLPTNHH---------PQSGCI---SVI 377
F N + K + + K C S ++ P G I SV
Sbjct: 668 FRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHKDRNLIIYILVPIIGAIIILSVC 727
Query: 378 AYVPIIWDQANREGQRSPQNSQG--LLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRHG 435
A + I + + ++ + + G LSI SF GK Y EII+A +FD KY IG+G HG
Sbjct: 728 AGIFICFRKRTKQIEEHTDSESGGETLSIFSFDGKVRYQEIIKATGEFDPKYLIGTGGHG 787
Query: 436 SVYRAELPSKEFLAVKKFNSPLPSD--QIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA 493
VY+A+LP+ +AVKK N S + ++EF EI ALT+IRHRN+VK +GFCSH
Sbjct: 788 KVYKAKLPNA-IMAVKKLNETTDSSISNPSTKQEFLNEIRALTEIRHRNVVKLFGFCSHR 846
Query: 494 RHSILIYEYLKRGSLATNLSNDAAAEELD------------------------------I 523
R++ L+YEY++RGSL L ND A++LD I
Sbjct: 847 RNTFLVYEYMERGSLRKVLENDDEAKKLDWGKRINVVKGVAHALSYMHHDRSPAIVHRDI 906
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSF 577
SS N+LL +++A +SDFG AK LKPDSSNWSA+ GTY YVAP+ +KCDVYSF
Sbjct: 907 SSGNILLGEDYEAKISDFGTAKLLKPDSSNWSAVAGTYGYVAPELAYAMKVTEKCDVYSF 966
Query: 578 RVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSC 637
VL LEVIKG+HP VS++ SP + L + D RLP P+P+++ +++ I++VA C
Sbjct: 967 GVLTLEVIKGEHPGDLVSTLSSSPPDATLSLKSISDHRLPEPTPEIKEEVLEILKVALLC 1026
Query: 638 LDVSPESRPTMQTIT 652
L P++RPTM +I+
Sbjct: 1027 LHSDPQARPTMLSIS 1041
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297846638|ref|XP_002891200.1| hypothetical protein ARALYDRAFT_473694 [Arabidopsis lyrata subsp. lyrata] gi|297337042|gb|EFH67459.1| hypothetical protein ARALYDRAFT_473694 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 306/733 (41%), Positives = 422/733 (57%), Gaps = 85/733 (11%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
NL NL L+L NYLTG+IP E N++S++ L L N GS+PSS GN + L L+L +
Sbjct: 391 NLKNLTVLYLHHNYLTGVIPPELGNMESMIDLALSQNNLTGSIPSSFGNFTKLESLYLRD 450
Query: 61 NNLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N+LSG+IP V N LT L L+ N+FTG L NIC+ G L+ + NH G IPK LR
Sbjct: 451 NHLSGTIPRGVANSSELTELLLDINNFTGFLPENICKGGKLQNFSLDYNHLEGHIPKSLR 510
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
+C +L+R GN G ISEAFG+Y +L F+D+S N F GEI+SNW K PKL L +S
Sbjct: 511 DCKSLIRAKFVGNKFIGNISEAFGVYPDLDFIDLSHNKFNGEISSNWQKSPKLGALIMSN 570
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
NNIT +IP EI N+ L E DLS N++ G++P+ G L L+KL+L GN+L G +P+ +
Sbjct: 571 NNITGAIPPEIWNMKQLGELDLSTNNLTGELPEAIGNLTGLSKLLLNGNKLSGRVPTGLS 630
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
LT LE L+LS+NRFSS IP++ + LKLH ++LSK F +P L KL QL+ L+LSH
Sbjct: 631 FLTNLESLDLSSNRFSSQIPQTFDSFLKLHEMNLSKNNFDGRIPG-LTKLTQLTHLDLSH 689
Query: 300 NFLGREIPSQICSMECCEVFCTITNS----VPTN-------NFLNCQKGYACQKVV--LT 346
N L EIPSQ+ S++ + N+ +PT F++ +
Sbjct: 690 NQLDGEIPSQLSSLQSLDKLNLSHNNLSGFIPTTFESMKALTFIDISNNKLEGPLPDNPA 749
Query: 347 FQQFSTSA-----KICPNL--SRLPT----NHHPQSGCISVIAYVPI------------- 382
FQ ++ A +C N+ RL + ++G + V VPI
Sbjct: 750 FQNATSDALEGNRGLCSNIPKQRLKSCRGFQKPKKNGNLLVWILVPILGALVILSICAGA 809
Query: 383 ----IWDQANREGQRSPQNSQGLLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVY 438
I + G+ + + +SI S GKF Y +II + N+FD +Y IGSG + VY
Sbjct: 810 FTYYIRKRKPHNGRNTDSETGENMSIFSVDGKFKYQDIIESTNEFDQRYLIGSGGYSKVY 869
Query: 439 RAELPSKEFLAVKKFNSPLPSDQIAD---QKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495
+A LP +AVK+ + + ++I+ ++EF E+ ALT+IRHRN+VK +GFCSH RH
Sbjct: 870 KANLPDA-IVAVKRLHDTI-DEEISKPVVKQEFLNEVRALTEIRHRNVVKLFGFCSHRRH 927
Query: 496 SILIYEYLKRGSLATNLSNDAAAEEL------------------------------DISS 525
+ LIYEY+++GSL L+N+ A+ L DISS
Sbjct: 928 TFLIYEYMEKGSLNKLLANEEEAKRLTWTKRINIVKGVAHALSYMHHDRSTPIVHRDISS 987
Query: 526 KNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDY------RKKCDVYSFRV 579
N+LLD ++ A +SDFG AK LK DSSNWSA+ GTY YVAP++ +KCDVYSF V
Sbjct: 988 GNILLDNDYTAKISDFGTAKLLKTDSSNWSAVAGTYGYVAPEFAYTMKVTEKCDVYSFGV 1047
Query: 580 LALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLD 639
L LEVI GKHP V+S+ SP + L + D R+ P + KLI ++EVA SCL
Sbjct: 1048 LILEVIMGKHPGDLVASLSSSPGET-LSLRSISDERILEPRGQNREKLIKMVEVALSCLQ 1106
Query: 640 VSPESRPTMQTIT 652
P+SRPTM +I+
Sbjct: 1107 ADPQSRPTMLSIS 1119
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7267528|emb|CAB78010.1| receptor protein kinase-like protein [Arabidopsis thaliana] gi|7321074|emb|CAB82121.1| receptor protein kinase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 297/735 (40%), Positives = 419/735 (57%), Gaps = 84/735 (11%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
N+ L LHL N L G IP E ++S++ L + N+ G +P S G L++L +LFL +
Sbjct: 290 NIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRD 349
Query: 61 NNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N LSG IPP + N LTVL ++ N+FTG L ICR G LE + + NHF GP+PK LR
Sbjct: 350 NQLSGPIPPGIANSTELTVLQVDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLR 409
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
+C +L+R+ +GN+ G ISEAFG+Y L F+D+S+NNF G++++NW + KL +S
Sbjct: 410 DCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSN 469
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
N+IT +IP EI N++ L++ DLS N I G++P+ +N ++KL L GN+L G +PS I
Sbjct: 470 NSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIR 529
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLS------ 293
LT LE+L+LS+NRFSS IP +L NL +L+Y++LS+ Q +P+ L KL QL
Sbjct: 530 LLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSY 589
Query: 294 ------------------ELELSHNFLGREIPSQICSMECCEVFCTITNS----VPTNN- 330
L+LSHN L +IP M N+ +P N
Sbjct: 590 NQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAA 649
Query: 331 FLNCQ-KGYACQKVVLTFQQFSTSAKICPNLSRLPTNHH---------PQSGCI---SVI 377
F N + K + + K C S ++ P G I SV
Sbjct: 650 FRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHKDRNLIIYILVPIIGAIIILSVC 709
Query: 378 AYVPIIWDQANREGQRSPQNSQG--LLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRHG 435
A + I + + ++ + + G LSI SF GK Y EII+A +FD KY IG+G HG
Sbjct: 710 AGIFICFRKRTKQIEEHTDSESGGETLSIFSFDGKVRYQEIIKATGEFDPKYLIGTGGHG 769
Query: 436 SVYRAELPSKEFLAVKKFNSPLPSD--QIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA 493
VY+A+LP+ +AVKK N S + ++EF EI ALT+IRHRN+VK +GFCSH
Sbjct: 770 KVYKAKLPNA-IMAVKKLNETTDSSISNPSTKQEFLNEIRALTEIRHRNVVKLFGFCSHR 828
Query: 494 RHSILIYEYLKRGSLATNLSNDAAAEELD------------------------------I 523
R++ L+YEY++RGSL L ND A++LD I
Sbjct: 829 RNTFLVYEYMERGSLRKVLENDDEAKKLDWGKRINVVKGVAHALSYMHHDRSPAIVHRDI 888
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSF 577
SS N+LL +++A +SDFG AK LKPDSSNWSA+ GTY YVAP+ +KCDVYSF
Sbjct: 889 SSGNILLGEDYEAKISDFGTAKLLKPDSSNWSAVAGTYGYVAPELAYAMKVTEKCDVYSF 948
Query: 578 RVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSC 637
VL LEVIKG+HP VS++ SP + L + D RLP P+P+++ +++ I++VA C
Sbjct: 949 GVLTLEVIKGEHPGDLVSTLSSSPPDATLSLKSISDHRLPEPTPEIKEEVLEILKVALLC 1008
Query: 638 LDVSPESRPTMQTIT 652
L P++RPTM +I+
Sbjct: 1009 LHSDPQARPTMLSIS 1023
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 667 | ||||||
| TAIR|locus:2138268 | 1045 | AT4G08850 [Arabidopsis thalian | 0.475 | 0.303 | 0.465 | 1.2e-141 | |
| TAIR|locus:2011339 | 1120 | AT1G35710 [Arabidopsis thalian | 0.469 | 0.279 | 0.485 | 1.7e-134 | |
| TAIR|locus:2160791 | 1102 | AT5G63930 [Arabidopsis thalian | 0.485 | 0.294 | 0.366 | 5.1e-86 | |
| TAIR|locus:2046525 | 1124 | AT2G33170 [Arabidopsis thalian | 0.505 | 0.299 | 0.349 | 4.8e-84 | |
| TAIR|locus:2020417 | 1101 | AT1G17230 [Arabidopsis thalian | 0.791 | 0.479 | 0.315 | 5.5e-74 | |
| TAIR|locus:2168907 | 966 | XIP1 "XYLEM INTERMIXED WITH PH | 0.511 | 0.353 | 0.350 | 1.9e-73 | |
| TAIR|locus:2161158 | 1041 | PXY "PHLOEM INTERCALATED WITH | 0.460 | 0.294 | 0.349 | 1.1e-70 | |
| TAIR|locus:2005540 | 999 | HAE "HAESA" [Arabidopsis thali | 0.457 | 0.305 | 0.389 | 1.7e-70 | |
| TAIR|locus:2097310 | 1002 | BAM2 "BARELY ANY MERISTEM 2" [ | 0.458 | 0.305 | 0.351 | 1.6e-68 | |
| TAIR|locus:2182870 | 1192 | EMS1 "EXCESS MICROSPOROCYTES1" | 0.466 | 0.260 | 0.366 | 6.3e-68 |
| TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 735 (263.8 bits), Expect = 1.2e-141, Sum P(3) = 1.2e-141
Identities = 148/318 (46%), Positives = 211/318 (66%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
N+ L LHL N L G IP E ++S++ L + N+ G +P S G L++L +LFL +
Sbjct: 308 NIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRD 367
Query: 61 NNLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N LSG IPP + N LTVL L+ N+FTG L ICR G LE + + NHF GP+PK LR
Sbjct: 368 NQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLR 427
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
+C +L+R+ +GN+ G ISEAFG+Y L F+D+S+NNF G++++NW + KL +S
Sbjct: 428 DCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSN 487
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
N+IT +IP EI N++ L++ DLS N I G++P+ +N ++KL L GN+L G +PS I
Sbjct: 488 NSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIR 547
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
LT LE+L+LS+NRFSS IP +L NL +L+Y++LS+ Q +P+ L KL QL L+LS+
Sbjct: 548 LLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSY 607
Query: 300 NFLGREIPSQICSMECCE 317
N L EI SQ S++ E
Sbjct: 608 NQLDGEISSQFRSLQNLE 625
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| TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 751 (269.4 bits), Expect = 1.7e-134, Sum P(3) = 1.7e-134
Identities = 153/315 (48%), Positives = 210/315 (66%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
NL NL L+L NYLTG+IP E N++S++ L L N+ GS+P S GN + L L+L
Sbjct: 388 NLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRV 447
Query: 61 NNLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N+LSG+IPP V N LT L L+ N+FTG +C+ L+ + + NH GPIPK LR
Sbjct: 448 NHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLR 507
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
+C +L+R GN G I EAFGIY +L F+D S N F GEI+SNW K PKL L +S
Sbjct: 508 DCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSN 567
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
NNIT +IP EI N++ L E DLS N++ G++P+ G L +L++L L GNQL G +P+ +
Sbjct: 568 NNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLS 627
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
LT LE L+LS+N FSS IP++ + LKLH ++LS+ +F +P+ L KL QL++L+LSH
Sbjct: 628 FLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPR-LSKLTQLTQLDLSH 686
Query: 300 NFLGREIPSQICSME 314
N L EIPSQ+ S++
Sbjct: 687 NQLDGEIPSQLSSLQ 701
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| TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 496 (179.7 bits), Expect = 5.1e-86, Sum P(3) = 5.1e-86
Identities = 120/327 (36%), Positives = 172/327 (52%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
N+ L L+L +N LTG IP E LK+L KL L N G +P L L L LF+
Sbjct: 335 NIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQ 394
Query: 61 NNLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N+LSG+IPP +G L VL + +NH +G + +C + + + +G N+ G IP +
Sbjct: 395 NSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGIT 454
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
C LV++ L NN+ G +N+T +++ N F G I G C L L ++
Sbjct: 455 TCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLAD 514
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
N T +P EIG LS L ++S N + G++P E L +L + N G LPSE+G
Sbjct: 515 NGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVG 574
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLS-ELELS 298
SL +LE L LS N S IP +LGNL +L L + F +P+ELG L L L LS
Sbjct: 575 SLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLS 634
Query: 299 HNFLGREIPSQICSMECCEVFCTITNS 325
+N L EIP ++ ++ E F + N+
Sbjct: 635 YNKLTGEIPPELSNLVMLE-FLLLNNN 660
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| TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 491 (177.9 bits), Expect = 4.8e-84, Sum P(3) = 4.8e-84
Identities = 121/346 (34%), Positives = 179/346 (51%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
++ LR L+L N LTG+IP E L++L KL L N G +P NL+S+R L LF N
Sbjct: 348 ISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHN 407
Query: 62 NLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
+LSG IP +G L V+ N +G + IC+ L + +G N G IP +
Sbjct: 408 SLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLR 467
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
C +L+++ + GN + G +NL+ +++ N F G + G C KL L+++ N
Sbjct: 468 CKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAAN 527
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240
+ ++P EI LS L F++S N + G IP E L +L L N IG LP E+GS
Sbjct: 528 QFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGS 587
Query: 241 LTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLS-ELELSH 299
L +LE L LS NRFS IP ++GNL L L + F +P +LG L L + LS+
Sbjct: 588 LHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSY 647
Query: 300 NFLGREIPSQICSMECCEVFCTITNS-----VPTNNFLNCQKGYAC 340
N EIP +I ++ ++ ++ N+ +PT F N C
Sbjct: 648 NDFSGEIPPEIGNLHLL-MYLSLNNNHLSGEIPTT-FENLSSLLGC 691
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| TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 571 (206.1 bits), Expect = 5.5e-74, Sum P(2) = 5.5e-74
Identities = 174/552 (31%), Positives = 246/552 (44%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
L L +L L DN L G IP + L + N G +P+ +L L L N
Sbjct: 378 LPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSN 437
Query: 62 NLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
LSG+IP + LT L L +N TG+L + L + + N G I L
Sbjct: 438 KLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGK 497
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
NL R+ L NN G I G + +IS N G I G C + L++S N
Sbjct: 498 LKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGN 557
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240
+ I E+G L L LS N + G+IP FG L L +L L GN L ++P E+G
Sbjct: 558 KFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGK 617
Query: 241 LTKLEF-LNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
LT L+ LN+S N S IP+SLGNL L L L+ + E+P +G L+ L +S+
Sbjct: 618 LTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISN 677
Query: 300 NFLGREIPSQICSMECCEVFCTITNSVPTNNFLNCQKGYACQKVVLTFQQFSTSAKICPN 359
N L +P +N + N Q+ + CQ +V
Sbjct: 678 NNLVGTVPDTAVFQRMDS-----SNFAGNHGLCNSQRSH-CQPLVPHSDSKLNWLINGSQ 731
Query: 360 LSRLPTNHHPQSGCISVIAYVPIIWDQANREGQ---RSPQNSQGLLSILSFKGK-FDYVE 415
++ T G + +I ++ + W RE Q ++ F K F Y
Sbjct: 732 RQKILTITCIVIGSVFLITFLGLCWTIKRREPAFVALEDQTKPDVMDSYYFPKKGFTYQG 791
Query: 416 IIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEAL 475
++ A +F +G G G+VY+AE+ E +AVKK NS + + F AEI L
Sbjct: 792 LVDATRNFSEDVVLGRGACGTVYKAEMSGGEVIAVKKLNSR--GEGASSDNSFRAEISTL 849
Query: 476 TKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLEHK 535
KIRHRNIVK YGFC H ++L+YEY+ +GSL E+L KN LLD +
Sbjct: 850 GKIRHRNIVKLYGFCYHQNSNLLLYEYMSKGSLG---------EQLQRGEKNCLLDWNAR 900
Query: 536 AHVSDFGIAKFL 547
++ G A+ L
Sbjct: 901 YRIA-LGAAEGL 911
|
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| TAIR|locus:2168907 XIP1 "XYLEM INTERMIXED WITH PHLOEM 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 1.9e-73, Sum P(3) = 1.9e-73
Identities = 121/345 (35%), Positives = 176/345 (51%)
Query: 1 NLTNLRELHLRDNY-LTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLF 59
NL+NLR+L L NY LTG IP E NLK+L + + ++ GS+P S+ +L +LR L L+
Sbjct: 241 NLSNLRQLELYYNYHLTGSIPEEIGNLKNLTDIDISVSRLTGSIPDSICSLPNLRVLQLY 300
Query: 60 ENNLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCL 118
N+L+G IP S+GN L +L+L +N+ TG L N+ + + + V N GP+P +
Sbjct: 301 NNSLTGEIPKSLGNSKTLKILSLYDNYLTGELPPNLGSSSPMIALDVSENRLSGPLPAHV 360
Query: 119 RNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVS 178
L+ + N G+I E +G L ++ N G I P +S ++++
Sbjct: 361 CKSGKLLYFLVLQNRFTGSIPETYGSCKTLIRFRVASNRLVGTIPQGVMSLPHVSIIDLA 420
Query: 179 MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI 238
N+++ IP IGN L+E + N I G IP E +L KL L NQL G +PSE+
Sbjct: 421 YNSLSGPIPNAIGNAWNLSELFMQSNRISGVIPHELSHSTNLVKLDLSNNQLSGPIPSEV 480
Query: 239 GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELS 298
G L KL L L N S IP+SL NL L+ LDLS +P+ L +L+ S + S
Sbjct: 481 GRLRKLNLLVLQGNHLDSSIPDSLSNLKSLNVLDLSSNLLTGRIPENLSELLPTS-INFS 539
Query: 299 HNFLGREIPSQICSMECCEVFCTITN-SVPTNNFLNCQKGYACQK 342
N L IP + E F N +P + K CQ+
Sbjct: 540 SNRLSGPIPVSLIRGGLVESFSDNPNLCIPPTAGSSDLKFPMCQE 584
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| TAIR|locus:2161158 PXY "PHLOEM INTERCALATED WITH XYLEM" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 1.1e-70, Sum P(3) = 1.1e-70
Identities = 108/309 (34%), Positives = 161/309 (52%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
NL +L+ L N L+G IP+ LK+L L L N G +P +G L L LFL+
Sbjct: 295 NLKSLKLLDFSSNQLSGSIPSGFSTLKNLTWLSLISNNLSGEVPEGIGELPELTTLFLWN 354
Query: 61 NNLSGSIPPSVG-NLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
NN +G +P +G N L + + NN FTG + ++C L ++I+ N F G +PK L
Sbjct: 355 NNFTGVLPHKLGSNGKLETMDVSNNSFTGTIPSSLCHGNKLYKLILFSNMFEGELPKSLT 414
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
C +L R + N + GTI FG NLTF+D+S+N F +I +++ P L LN+S
Sbjct: 415 RCESLWRFRSQNNRLNGTIPIGFGSLRNLTFVDLSNNRFTDQIPADFATAPVLQYLNLST 474
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
N R +P I L F S ++++G+IP G S ++ L+GN L G +P +IG
Sbjct: 475 NFFHRKLPENIWKAPNLQIFSASFSNLIGEIPNYVG-CKSFYRIELQGNSLNGTIPWDIG 533
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
KL LNLS N + +IP + L + +DLS +P + G ++ +S+
Sbjct: 534 HCEKLLCLNLSQNHLNGIIPWEISTLPSIADVDLSHNLLTGTIPSDFGSSKTITTFNVSY 593
Query: 300 NFLGREIPS 308
N L IPS
Sbjct: 594 NQLIGPIPS 602
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| TAIR|locus:2005540 HAE "HAESA" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 483 (175.1 bits), Expect = 1.7e-70, Sum P(3) = 1.7e-70
Identities = 120/308 (38%), Positives = 163/308 (52%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
N+T L+ N LTG IP + NL +L L L N G LP S+ +L L LF
Sbjct: 282 NMTTLKRFDASMNKLTGKIP-DNLNLLNLESLNLFENMLEGPLPESITRSKTLSELKLFN 340
Query: 61 NNLSGSIPPSVG-NLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N L+G +P +G N L + L N F+G + N+C G LE +I+ N F G I L
Sbjct: 341 NRLTGVLPSQLGANSPLQYVDLSYNRFSGEIPANVCGEGKLEYLILIDNSFSGEISNNLG 400
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
C +L R+ L N + G I F L+ L++SDN+F G I LS L +S
Sbjct: 401 KCKSLTRVRLSNNKLSGQIPHGFWGLPRLSLLELSDNSFTGSIPKTIIGAKNLSNLRISK 460
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
N + SIP EIG+L+ + E + N G+IP+ KL L++L L NQL G +P E+
Sbjct: 461 NRFSGSIPNEIGSLNGIIEISGAENDFSGEIPESLVKLKQLSRLDLSKNQLSGEIPRELR 520
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
L LNL+ N S IP+ +G L L+YLDLS QF E+P EL L +L+ L LS+
Sbjct: 521 GWKNLNELNLANNHLSGEIPKEVGILPVLNYLDLSSNQFSGEIPLELQNL-KLNVLNLSY 579
Query: 300 NFLGREIP 307
N L +IP
Sbjct: 580 NHLSGKIP 587
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| TAIR|locus:2097310 BAM2 "BARELY ANY MERISTEM 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 452 (164.2 bits), Expect = 1.6e-68, Sum P(3) = 1.6e-68
Identities = 109/310 (35%), Positives = 164/310 (52%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
+++L+ + L +N TG IPT LK+L L L N+ G++P +G + L L L+EN
Sbjct: 286 ISSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKLYGAIPEFIGEMPELEVLQLWEN 345
Query: 62 NLSGSIPPSVG-NLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N +GSIP +G N L +L L +N TG L N+C L +I GN G IP L
Sbjct: 346 NFTGSIPQKLGENGRLVILDLSSNKLTGTLPPNMCSGNRLMTLITLGNFLFGSIPDSLGK 405
Query: 121 CPNLVRISLEGNNMRGTI-SEAFGIYLNLTFLDISDNNFFGEIA-SNWGKCPKLSTLNVS 178
C +L RI + N + G+I E FG+ L+ +++ DN GE+ S G L +++S
Sbjct: 406 CESLTRIRMGENFLNGSIPKELFGLP-KLSQVELQDNYLTGELPISGGGVSGDLGQISLS 464
Query: 179 MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI 238
N ++ S+P IGNLS + + L N G IP E G+L L+KL N G + EI
Sbjct: 465 NNQLSGSLPAAIGNLSGVQKLLLDGNKFSGSIPPEIGRLQQLSKLDFSHNLFSGRIAPEI 524
Query: 239 GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELS 298
L F++LS N S IP L + L+YL+LS+ + +P + + L+ ++ S
Sbjct: 525 SRCKLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNHLVGSIPVTIASMQSLTSVDFS 584
Query: 299 HNFLGREIPS 308
+N L +PS
Sbjct: 585 YNNLSGLVPS 594
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| TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 443 (161.0 bits), Expect = 6.3e-68, Sum P(3) = 6.3e-68
Identities = 119/325 (36%), Positives = 164/325 (50%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
N +L+ L L DN LTG IP E L SL L L N F+G +P +G+ +SL L L
Sbjct: 470 NAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGS 529
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTGNLR-------HNICRNGA--LER--VI-VGG 107
NNL G IP + L L L L N+ +G++ H I L+ + +
Sbjct: 530 NNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSY 589
Query: 108 NHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWG 167
N GPIP+ L C LV ISL N++ G I + NLT LD+S N G I G
Sbjct: 590 NRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMG 649
Query: 168 KCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRG 227
KL LN++ N + IP G L +L + +L+ N + G +P G L LT + L
Sbjct: 650 NSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSF 709
Query: 228 NQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELG 287
N L G L SE+ ++ KL L + N+F+ IP LGNL +L YLD+S+ E+P ++
Sbjct: 710 NNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKIC 769
Query: 288 KLVQLSELELSHNFLGREIPSQ-IC 311
L L L L+ N L E+PS +C
Sbjct: 770 GLPNLEFLNLAKNNLRGEVPSDGVC 794
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.11 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh2_kg.6__2914__AT4G08850.1 | annotation not avaliable (1019 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 667 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-63 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 8e-47 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-38 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 7e-38 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 7e-35 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-32 | |
| pfam00069 | 260 | pfam00069, Pkinase, Protein kinase domain | 8e-30 | |
| smart00219 | 257 | smart00219, TyrKc, Tyrosine kinase, catalytic doma | 2e-28 | |
| smart00221 | 258 | smart00221, STYKc, Protein kinase; unclassified sp | 4e-28 | |
| cd00180 | 215 | cd00180, PKc, Catalytic domain of Protein Kinases | 7e-28 | |
| smart00220 | 254 | smart00220, S_TKc, Serine/Threonine protein kinase | 2e-27 | |
| pfam07714 | 258 | pfam07714, Pkinase_Tyr, Protein tyrosine kinase | 3e-27 | |
| cd00192 | 262 | cd00192, PTKc, Catalytic domain of Protein Tyrosin | 5e-23 | |
| cd06606 | 260 | cd06606, STKc_MAPKKK, Catalytic domain of the Prot | 9e-23 | |
| cd05041 | 251 | cd05041, PTKc_Fes_like, Catalytic domain of Fes-li | 3e-21 | |
| cd05122 | 253 | cd05122, PKc_STE, Catalytic domain of STE family P | 1e-20 | |
| cd06628 | 267 | cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o | 3e-18 | |
| cd06917 | 277 | cd06917, STKc_NAK1_like, Catalytic domain of Funga | 3e-18 | |
| cd08215 | 258 | cd08215, STKc_Nek, Catalytic domain of the Protein | 3e-17 | |
| cd06623 | 264 | cd06623, PKc_MAPKK_plant_like, Catalytic domain of | 5e-17 | |
| cd05038 | 284 | cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai | 9e-17 | |
| cd05148 | 261 | cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro | 2e-16 | |
| cd06627 | 254 | cd06627, STKc_Cdc7_like, Catalytic domain of Cell | 2e-16 | |
| cd05068 | 261 | cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re | 3e-16 | |
| cd06626 | 264 | cd06626, STKc_MEKK4, Catalytic domain of the Prote | 5e-16 | |
| cd05059 | 256 | cd05059, PTKc_Tec_like, Catalytic domain of Tec-li | 5e-16 | |
| cd06612 | 256 | cd06612, STKc_MST1_2, Catalytic domain of the Prot | 2e-15 | |
| cd05039 | 256 | cd05039, PTKc_Csk_like, Catalytic domain of C-term | 2e-15 | |
| cd06629 | 272 | cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o | 2e-15 | |
| cd08217 | 265 | cd08217, STKc_Nek2, Catalytic domain of the Protei | 3e-15 | |
| COG0515 | 384 | COG0515, SPS1, Serine/threonine protein kinase [Ge | 4e-15 | |
| cd05114 | 256 | cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro | 2e-14 | |
| cd05060 | 257 | cd05060, PTKc_Syk_like, Catalytic domain of Spleen | 3e-14 | |
| cd06609 | 274 | cd06609, STKc_MST3_like, Catalytic domain of Mamma | 4e-14 | |
| cd05065 | 269 | cd05065, PTKc_EphR_B, Catalytic domain of the Prot | 4e-14 | |
| cd06614 | 286 | cd06614, STKc_PAK, Catalytic domain of the Protein | 1e-13 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-13 | |
| cd06632 | 258 | cd06632, STKc_MEKK1_plant, Catalytic domain of the | 5e-13 | |
| cd06647 | 293 | cd06647, STKc_PAK_I, Catalytic domain of the Prote | 5e-13 | |
| cd05033 | 266 | cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec | 5e-13 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 8e-13 | |
| cd06642 | 277 | cd06642, STKc_STK25-YSK1, Catalytic domain of the | 8e-13 | |
| cd05034 | 261 | cd05034, PTKc_Src_like, Catalytic domain of Src ki | 8e-13 | |
| cd05112 | 256 | cd05112, PTKc_Itk, Catalytic domain of the Protein | 9e-13 | |
| cd08529 | 256 | cd08529, STKc_FA2-like, Catalytic domain of the Pr | 1e-12 | |
| cd05049 | 280 | cd05049, PTKc_Trk, Catalytic domain of the Protein | 1e-12 | |
| cd06613 | 262 | cd06613, STKc_MAP4K3_like, Catalytic domain of Mit | 2e-12 | |
| cd06610 | 267 | cd06610, STKc_OSR1_SPAK, Catalytic domain of the P | 2e-12 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 3e-12 | |
| cd06640 | 277 | cd06640, STKc_MST4, Catalytic domain of the Protei | 4e-12 | |
| cd05113 | 256 | cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro | 7e-12 | |
| cd06630 | 268 | cd06630, STKc_MEKK1, Catalytic domain of the Prote | 7e-12 | |
| cd05046 | 275 | cd05046, PTK_CCK4, Pseudokinase domain of the Prot | 1e-11 | |
| cd05094 | 291 | cd05094, PTKc_TrkC, Catalytic domain of the Protei | 1e-11 | |
| cd05085 | 250 | cd05085, PTKc_Fer, Catalytic domain of the Protein | 1e-11 | |
| cd06655 | 296 | cd06655, STKc_PAK2, Catalytic domain of the Protei | 1e-11 | |
| cd05084 | 252 | cd05084, PTKc_Fes, Catalytic domain of the Protein | 2e-11 | |
| cd05092 | 280 | cd05092, PTKc_TrkA, Catalytic domain of the Protei | 3e-11 | |
| cd05081 | 284 | cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) | 4e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-11 | |
| cd08530 | 256 | cd08530, STKc_CNK2-like, Catalytic domain of the P | 6e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-11 | |
| cd05079 | 284 | cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma | 9e-11 | |
| cd05083 | 254 | cd05083, PTKc_Chk, Catalytic domain of the Protein | 1e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-10 | |
| cd06605 | 265 | cd06605, PKc_MAPKK, Catalytic domain of the dual-s | 2e-10 | |
| cd05052 | 263 | cd05052, PTKc_Abl, Catalytic domain of the Protein | 2e-10 | |
| cd06656 | 297 | cd06656, STKc_PAK3, Catalytic domain of the Protei | 2e-10 | |
| cd05070 | 260 | cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro | 3e-10 | |
| cd06654 | 296 | cd06654, STKc_PAK1, Catalytic domain of the Protei | 4e-10 | |
| cd05063 | 268 | cd05063, PTKc_EphR_A2, Catalytic domain of the Pro | 6e-10 | |
| cd05066 | 267 | cd05066, PTKc_EphR_A, Catalytic domain of the Prot | 9e-10 | |
| cd05082 | 256 | cd05082, PTKc_Csk, Catalytic domain of the Protein | 1e-09 | |
| cd05080 | 283 | cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma | 1e-09 | |
| cd06641 | 277 | cd06641, STKc_MST3, Catalytic domain of the Protei | 1e-09 | |
| cd06621 | 287 | cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of | 2e-09 | |
| cd06608 | 275 | cd06608, STKc_myosinIII_like, Catalytic domain of | 2e-09 | |
| cd06611 | 280 | cd06611, STKc_SLK_like, Catalytic domain of Ste20- | 3e-09 | |
| cd06625 | 263 | cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ | 4e-09 | |
| cd05123 | 250 | cd05123, STKc_AGC, Catalytic domain of AGC family | 5e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-09 | |
| cd05040 | 257 | cd05040, PTKc_Ack_like, Catalytic domain of the Pr | 6e-09 | |
| cd05580 | 290 | cd05580, STKc_PKA, Catalytic domain of the Protein | 1e-08 | |
| cd05071 | 262 | cd05071, PTKc_Src, Catalytic domain of the Protein | 1e-08 | |
| cd05581 | 280 | cd05581, STKc_PDK1, Catalytic domain of the Protei | 2e-08 | |
| cd05069 | 260 | cd05069, PTKc_Yes, Catalytic domain of the Protein | 2e-08 | |
| cd05057 | 279 | cd05057, PTKc_EGFR_like, Catalytic domain of Epide | 2e-08 | |
| cd05572 | 262 | cd05572, STKc_cGK_PKG, Catalytic domain of the Pro | 3e-08 | |
| cd06636 | 282 | cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr | 6e-08 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 7e-08 | |
| cd05048 | 283 | cd05048, PTKc_Ror, Catalytic Domain of the Protein | 7e-08 | |
| cd06659 | 297 | cd06659, STKc_PAK6, Catalytic domain of the Protei | 1e-07 | |
| cd05072 | 261 | cd05072, PTKc_Lyn, Catalytic domain of the Protein | 1e-07 | |
| cd06631 | 265 | cd06631, STKc_YSK4, Catalytic domain of the Protei | 1e-07 | |
| cd08225 | 257 | cd08225, STKc_Nek5, Catalytic domain of the Protei | 2e-07 | |
| cd05045 | 290 | cd05045, PTKc_RET, Catalytic domain of the Protein | 2e-07 | |
| cd06648 | 285 | cd06648, STKc_PAK_II, Catalytic domain of the Prot | 2e-07 | |
| cd05612 | 291 | cd05612, STKc_PRKX_like, Catalytic domain of PRKX- | 2e-07 | |
| cd05055 | 302 | cd05055, PTKc_PDGFR, Catalytic domain of the Prote | 2e-07 | |
| cd05118 | 283 | cd05118, STKc_CMGC, Catalytic domain of CMGC famil | 2e-07 | |
| cd08223 | 257 | cd08223, STKc_Nek4, Catalytic domain of the Protei | 2e-07 | |
| cd08221 | 256 | cd08221, STKc_Nek9, Catalytic domain of the Protei | 4e-07 | |
| cd05093 | 288 | cd05093, PTKc_TrkB, Catalytic domain of the Protei | 4e-07 | |
| cd06624 | 268 | cd06624, STKc_ASK, Catalytic domain of the Protein | 6e-07 | |
| cd05578 | 258 | cd05578, STKc_Yank1, Catalytic domain of the Prote | 1e-06 | |
| cd06620 | 284 | cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of | 1e-06 | |
| cd08219 | 255 | cd08219, STKc_Nek3, Catalytic domain of the Protei | 1e-06 | |
| cd05036 | 277 | cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro | 1e-06 | |
| cd05115 | 257 | cd05115, PTKc_Zap-70, Catalytic domain of the Prot | 1e-06 | |
| cd06619 | 279 | cd06619, PKc_MKK5, Catalytic domain of the dual-sp | 1e-06 | |
| cd06639 | 291 | cd06639, STKc_myosinIIIB, Catalytic domain of the | 1e-06 | |
| cd06657 | 292 | cd06657, STKc_PAK4, Catalytic domain of the Protei | 1e-06 | |
| cd05044 | 269 | cd05044, PTKc_c-ros, Catalytic domain of the Prote | 1e-06 | |
| cd06634 | 308 | cd06634, STKc_TAO2, Catalytic domain of the Protei | 1e-06 | |
| cd06638 | 286 | cd06638, STKc_myosinIIIA, Catalytic domain of the | 2e-06 | |
| cd06635 | 317 | cd06635, STKc_TAO1, Catalytic domain of the Protei | 2e-06 | |
| cd05067 | 260 | cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro | 2e-06 | |
| cd05116 | 257 | cd05116, PTKc_Syk, Catalytic domain of the Protein | 2e-06 | |
| cd06616 | 288 | cd06616, PKc_MKK4, Catalytic domain of the dual-sp | 2e-06 | |
| cd08224 | 267 | cd08224, STKc_Nek6_Nek7, Catalytic domain of the P | 2e-06 | |
| cd05051 | 296 | cd05051, PTKc_DDR, Catalytic domain of the Protein | 3e-06 | |
| cd07832 | 286 | cd07832, STKc_CCRK, Catalytic domain of the Serine | 4e-06 | |
| PLN00034 | 353 | PLN00034, PLN00034, mitogen-activated protein kina | 4e-06 | |
| cd05075 | 272 | cd05075, PTKc_Axl, Catalytic domain of the Protein | 5e-06 | |
| cd06658 | 292 | cd06658, STKc_PAK5, Catalytic domain of the Protei | 5e-06 | |
| cd06646 | 267 | cd06646, STKc_MAP4K5, Catalytic domain of the Prot | 5e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-06 | |
| cd06651 | 266 | cd06651, STKc_MEKK3, Catalytic domain of the Prote | 6e-06 | |
| cd07846 | 286 | cd07846, STKc_CDKL2_3, Catalytic domain of the Ser | 6e-06 | |
| cd06645 | 267 | cd06645, STKc_MAP4K3, Catalytic domain of the Prot | 7e-06 | |
| cd05106 | 374 | cd05106, PTKc_CSF-1R, Catalytic domain of the Prot | 9e-06 | |
| cd06637 | 272 | cd06637, STKc_TNIK, Catalytic domain of the Protei | 9e-06 | |
| cd05058 | 262 | cd05058, PTKc_Met_Ron, Catalytic domain of the Pro | 1e-05 | |
| cd05053 | 293 | cd05053, PTKc_FGFR, Catalytic domain of the Protei | 1e-05 | |
| cd05579 | 265 | cd05579, STKc_MAST_like, Catalytic domain of Micro | 1e-05 | |
| cd06653 | 264 | cd06653, STKc_MEKK3_like_1, Catalytic domain of MA | 2e-05 | |
| cd06644 | 292 | cd06644, STKc_STK10_LOK, Catalytic domain of the P | 2e-05 | |
| cd07840 | 287 | cd07840, STKc_CDK9_like, Catalytic domain of Cycli | 2e-05 | |
| cd07833 | 288 | cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep | 3e-05 | |
| cd05056 | 270 | cd05056, PTKc_FAK, Catalytic domain of the Protein | 4e-05 | |
| PTZ00283 | 496 | PTZ00283, PTZ00283, serine/threonine protein kinas | 4e-05 | |
| cd05050 | 288 | cd05050, PTKc_Musk, Catalytic domain of the Protei | 4e-05 | |
| cd05088 | 303 | cd05088, PTKc_Tie2, Catalytic domain of the Protei | 5e-05 | |
| PTZ00263 | 329 | PTZ00263, PTZ00263, protein kinase A catalytic sub | 6e-05 | |
| cd08220 | 256 | cd08220, STKc_Nek8, Catalytic domain of the Protei | 6e-05 | |
| cd05035 | 273 | cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li | 1e-04 | |
| cd05074 | 273 | cd05074, PTKc_Tyro3, Catalytic domain of the Prote | 1e-04 | |
| cd05582 | 318 | cd05582, STKc_RSK_N, N-terminal catalytic domain o | 1e-04 | |
| cd06652 | 265 | cd06652, STKc_MEKK2, Catalytic domain of the Prote | 1e-04 | |
| cd05073 | 260 | cd05073, PTKc_Hck, Catalytic domain of the Protein | 1e-04 | |
| cd05032 | 277 | cd05032, PTKc_InsR_like, Catalytic domain of Insul | 1e-04 | |
| cd06633 | 313 | cd06633, STKc_TAO3, Catalytic domain of the Protei | 1e-04 | |
| cd05621 | 370 | cd05621, STKc_ROCK2, Catalytic domain of the Prote | 2e-04 | |
| cd06607 | 307 | cd06607, STKc_TAO, Catalytic domain of the Protein | 2e-04 | |
| cd05618 | 329 | cd05618, STKc_aPKC_iota, Catalytic domain of the P | 2e-04 | |
| cd05583 | 288 | cd05583, STKc_MSK_N, N-terminal catalytic domain o | 2e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-04 | |
| PTZ00426 | 340 | PTZ00426, PTZ00426, cAMP-dependent protein kinase | 3e-04 | |
| cd05111 | 279 | cd05111, PTK_HER3, Pseudokinase domain of the Prot | 3e-04 | |
| cd07859 | 338 | cd07859, STKc_TDY_MAPK_plant, Catalytic domain of | 3e-04 | |
| cd05597 | 331 | cd05597, STKc_DMPK_like, Catalytic domain of Myoto | 3e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 4e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 4e-04 | |
| cd08229 | 267 | cd08229, STKc_Nek7, Catalytic domain of the Protei | 4e-04 | |
| cd08528 | 269 | cd08528, STKc_Nek10, Catalytic domain of the Prote | 4e-04 | |
| cd05614 | 332 | cd05614, STKc_MSK2_N, N-terminal catalytic domain | 5e-04 | |
| cd05616 | 323 | cd05616, STKc_cPKC_beta, Catalytic domain of the P | 5e-04 | |
| cd06643 | 282 | cd06643, STKc_SLK, Catalytic domain of the Protein | 6e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 7e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 7e-04 | |
| cd07842 | 316 | cd07842, STKc_CDK8_like, Catalytic domain of Cycli | 7e-04 | |
| cd07860 | 284 | cd07860, STKc_CDK2_3, Catalytic domain of the Seri | 7e-04 | |
| cd05592 | 316 | cd05592, STKc_nPKC_theta_delta, Catalytic domain o | 8e-04 | |
| cd05613 | 290 | cd05613, STKc_MSK1_N, N-terminal catalytic domain | 8e-04 | |
| cd05619 | 316 | cd05619, STKc_nPKC_theta, Catalytic domain of the | 0.001 | |
| cd05098 | 307 | cd05098, PTKc_FGFR1, Catalytic domain of the Prote | 0.001 | |
| cd06622 | 286 | cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of | 0.001 | |
| PLN00009 | 294 | PLN00009, PLN00009, cyclin-dependent kinase A; Pro | 0.001 | |
| cd05099 | 314 | cd05099, PTKc_FGFR4, Catalytic domain of the Prote | 0.001 | |
| cd08228 | 267 | cd08228, STKc_Nek6, Catalytic domain of the Protei | 0.002 | |
| cd05615 | 323 | cd05615, STKc_cPKC_alpha, Catalytic domain of the | 0.002 | |
| cd05101 | 304 | cd05101, PTKc_FGFR2, Catalytic domain of the Prote | 0.002 | |
| cd07829 | 282 | cd07829, STKc_CDK_like, Catalytic domain of Cyclin | 0.002 | |
| cd05087 | 269 | cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t | 0.002 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 0.003 | |
| cd05620 | 316 | cd05620, STKc_nPKC_delta, Catalytic domain of the | 0.003 | |
| cd05104 | 375 | cd05104, PTKc_Kit, Catalytic domain of the Protein | 0.003 | |
| cd05110 | 303 | cd05110, PTKc_HER4, Catalytic domain of the Protei | 0.003 | |
| cd05624 | 331 | cd05624, STKc_MRCK_beta, Catalytic domain of the P | 0.003 | |
| cd05042 | 269 | cd05042, PTKc_Aatyk, Catalytic domain of the Prote | 0.003 | |
| cd05585 | 312 | cd05585, STKc_YPK1_like, Catalytic domain of Yeast | 0.004 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 6e-63
Identities = 192/702 (27%), Positives = 307/702 (43%), Gaps = 82/702 (11%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+L L L L DN L+G IP L++L L L N F G +P ++ +L L+ L L+
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341
Query: 61 NNLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N SG IP ++G LTVL L N+ TG + +C +G L ++I+ N G IPK L
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
C +L R+ L+ N+ G + F + FLDIS+NN G I S P L L+++
Sbjct: 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
N +P G+ L DLS N G +P++ G L+ L +L L N+L G +P E+
Sbjct: 462 NKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS 520
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
S KL L+LS N+ S IP S + L LDLS+ Q E+PK LG + L ++ +SH
Sbjct: 521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH 580
Query: 300 NFLGREIPSQICSMECCEVFCTITNSVPTNNFLNCQKGYA-----CQKVVLTFQQFSTSA 354
N L +PS F I S N C C++V T +
Sbjct: 581 NHLHGSLPST-------GAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYIT 633
Query: 355 KICPNLSRLPTNHHPQSGCISVIAYVPIIWDQANREGQRSPQNSQGLLSILSFKGKFDYV 414
L +++A+ + N + +N G + F K
Sbjct: 634 CTLGAFLVL-----------ALVAFGFVFIRGRNNLELKRVENEDGTWELQFFDSKVSKS 682
Query: 415 EIIRAI-NDFDAKYCIGSGRHGSVYRAELPSK--EFLA--VKKFNSPLPSDQIADQKEFF 469
I I + + I G+ G+ Y+ + +F+ + NS +PS +IAD
Sbjct: 683 ITINDILSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNS-IPSSEIAD----- 736
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN----------DAAAE 519
+ K++H NIVK G C + + LI+EY++ +L+ L N A+
Sbjct: 737 -----MGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRNLSWERRRKIAIGIAK 791
Query: 520 EL--------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVA 565
L ++S + +++D + + H+ + L D+ + + YVA
Sbjct: 792 ALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTDTKCFISSA----YVA 846
Query: 566 PDYRK------KCDVYSFRVLALEVIKGKHPRGFVSSILPSP------SVINMRLDEMLD 613
P+ R+ K D+Y F ++ +E++ GK P + S + LD +D
Sbjct: 847 PETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWID 906
Query: 614 PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P + Q +++ +M +A C P +RP + + L
Sbjct: 907 PSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTL 948
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (452), Expect = 8e-47
Identities = 115/314 (36%), Positives = 171/314 (54%), Gaps = 2/314 (0%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
+ +L+ ++L N L+G IP E L SL L L N G +PSS+GNL +L+YLFL++N
Sbjct: 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270
Query: 62 NLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
LSG IPPS+ +L L L L +N +G + + + LE + + N+F G IP L +
Sbjct: 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
P L + L N G I + G + NLT LD+S NN GEI L L + N
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240
++ IP +G +L L N G++P EF KL + L + N L G + S
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450
Query: 241 LTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN 300
+ L+ L+L+ N+F +P+S G+ +L LDLS+ QF +P++LG L +L +L+LS N
Sbjct: 451 MPSLQMLSLARNKFFGGLPDSFGSK-RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509
Query: 301 FLGREIPSQICSME 314
L EIP ++ S +
Sbjct: 510 KLSGEIPDELSSCK 523
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 1e-38
Identities = 108/313 (34%), Positives = 156/313 (49%), Gaps = 2/313 (0%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLS-SLRYLFLF 59
N + + + L ++G I + + L + + L NQ G +P + S SLRYL L
Sbjct: 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126
Query: 60 ENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
NN +GSIP + T L L NN +G + ++I +L+ + +GGN G IP L
Sbjct: 127 NNNFTGSIPRGSIPNLET-LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
N +L ++L N + G I G +L ++ + NN GEI G L+ L++
Sbjct: 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
NN+T IP +GNL L L N + G IP L L L L N L G +P +
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
L LE L+L +N F+ IP +L +L +L L L +F E+PK LGK L+ L+LS
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365
Query: 300 NFLGREIPSQICS 312
N L EIP +CS
Sbjct: 366 NNLTGEIPEGLCS 378
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 7e-38
Identities = 102/336 (30%), Positives = 154/336 (45%), Gaps = 26/336 (7%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
++L+ L L N L G IP NL SL L L NQ G +P +G + SL++++L NN
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223
Query: 63 LSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNC 121
LSG IP +G L L L L N+ TG + ++ L+ + + N GPIP + +
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNN 181
L+ + L N++ G I E NL L + NNF G+I P+L L + N
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343
Query: 182 ITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSL 241
+ IP +G + L DLS N++ G+IP+ +L KLIL N L G +P +G+
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403
Query: 242 TKLE------------------------FLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQ 277
L FL++S N I ++ L L L++ +
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463
Query: 278 FIQELPKELGKLVQLSELELSHNFLGREIPSQICSM 313
F LP G +L L+LS N +P ++ S+
Sbjct: 464 FFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSL 498
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 7e-35
Identities = 103/311 (33%), Positives = 150/311 (48%), Gaps = 9/311 (2%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
++LR L+L +N TG IP + + +L L L N G +P+ +G+ SSL+ L L N
Sbjct: 118 SSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175
Query: 63 LSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNC 121
L G IP S+ NL L L L +N G + + + +L+ + +G N+ G IP +
Sbjct: 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNN 181
+L + L NN+ G I + G NL +L + N G I + KL +L++S N+
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295
Query: 182 ITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSL 241
++ IP + L L L N+ GKIP L L L L N+ G +P +G
Sbjct: 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355
Query: 242 TKLEFLNLSTNRFSSLIPESL---GNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELS 298
L L+LSTN + IPE L GNL KL S E+PK LG L + L
Sbjct: 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS---LEGEIPKSLGACRSLRRVRLQ 412
Query: 299 HNFLGREIPSQ 309
N E+PS+
Sbjct: 413 DNSFSGELPSE 423
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 1e-32
Identities = 88/278 (31%), Positives = 135/278 (48%), Gaps = 28/278 (10%)
Query: 49 NLSSLRYLFLFENNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNI-CRNGALERVIVG 106
N S + + L N+SG I ++ L + + L NN +G + +I + +L + +
Sbjct: 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126
Query: 107 GNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNW 166
N+F G IP RG+I NL LD+S+N GEI ++
Sbjct: 127 NNNFTGSIP-------------------RGSIP-------NLETLDLSNNMLSGEIPNDI 160
Query: 167 GKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILR 226
G L L++ N + IP + NL++L L+ N +VG+IP+E G++ SL + L
Sbjct: 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220
Query: 227 GNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL 286
N L G +P EIG LT L L+L N + IP SLGNL L YL L + + +P +
Sbjct: 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280
Query: 287 GKLVQLSELELSHNFLGREIPSQICSMECCEVFCTITN 324
L +L L+LS N L EIP + ++ E+ +N
Sbjct: 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318
|
Length = 968 |
| >gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 8e-30
Identities = 68/264 (25%), Positives = 104/264 (39%), Gaps = 43/264 (16%)
Query: 428 CIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKF 486
+GSG G+VY+A + + +AVK + + EI L ++ H NIV+
Sbjct: 6 KLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSK--KDQTARREIRILRRLSHPNIVRL 63
Query: 487 YGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------------------LD 522
H L+ EY + G L LS E D
Sbjct: 64 IDAFEDKDHLYLVMEYCEGGDLFDYLSRGGPLSEDEAKKIALQILRGLEYLHSNGIIHRD 123
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP-------DYRKKCDVY 575
+ +N+LLD ++DFG+AK L SS+ + VGT Y+AP Y K DV+
Sbjct: 124 LKPENILLDENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLLGGNGYGPKVDVW 183
Query: 576 SFRVLALEVIKGKHPRGFVSSILPSPSVINM--RLDEMLDPRLPPPSPDVQGKLISIMEV 633
S V+ E++ GK P ++++ + +L P L P ++
Sbjct: 184 SLGVILYELLTGKPP-------FSGENILDQLQLIRRILGPPLEFDEPKWSSGSEEAKDL 236
Query: 634 AFSCLDVSPESRPTMQTITQQLLF 657
CL+ P RPT + I Q F
Sbjct: 237 IKKCLNKDPSKRPTAEEILQHPWF 260
|
Length = 260 |
| >gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 69/268 (25%), Positives = 105/268 (39%), Gaps = 58/268 (21%)
Query: 429 IGSGRHGSVYRAEL-----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G G VY+ +L K +AVK QI +EF E + K+ H N+
Sbjct: 7 LGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQI---EEFLREARIMRKLDHPNV 63
Query: 484 VKFYGFCSHARHSILIYEYLKRGSL-------ATNLSN--------DAAA-----EEL-- 521
VK G C+ ++ EY++ G L LS A E
Sbjct: 64 VKLLGVCTEEEPLYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSFALQIARGMEYLESKNF 123
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG--TYRYVAPD------YRK 570
D++++N L+ +SDFG+++ L D G R++AP+ +
Sbjct: 124 IHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYY-RKRGGKLPIRWMAPESLKEGKFTS 182
Query: 571 KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS--PDVQGKL 627
K DV+SF VL E+ G+ P + + V+ L RLP P P +L
Sbjct: 183 KSDVWSFGVLLWEIFTLGEQPYP----GMSNEEVLE-YLKNGY--RLPQPPNCPP---EL 232
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655
+M C PE RPT + + L
Sbjct: 233 YDLML---QCWAEDPEDRPTFSELVEIL 257
|
Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257 |
| >gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 4e-28
Identities = 68/268 (25%), Positives = 104/268 (38%), Gaps = 57/268 (21%)
Query: 429 IGSGRHGSVYRAEL-----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G G VY+ L + +AVK QI +EF E + K+ H NI
Sbjct: 7 LGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQI---EEFLREARIMRKLDHPNI 63
Query: 484 VKFYGFCSHARHSILIYEYLKRGSL--------ATNLSN--------DAAA-----EEL- 521
VK G C+ +++ EY+ G L LS A E
Sbjct: 64 VKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKN 123
Query: 522 ----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV-GTYRYVAPD------YRK 570
D++++N L+ +SDFG+++ L D R++AP+ +
Sbjct: 124 FIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGGKLPIRWMAPESLKEGKFTS 183
Query: 571 KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS--PDVQGKL 627
K DV+SF VL E+ G+ P + + V+ L + RLP P P +L
Sbjct: 184 KSDVWSFGVLLWEIFTLGEEPY----PGMSNAEVLE-YLKKGY--RLPKPPNCPP---EL 233
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655
+M C PE RPT + + L
Sbjct: 234 YKLML---QCWAEDPEDRPTFSELVEIL 258
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258 |
| >gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 7e-28
Identities = 71/261 (27%), Positives = 99/261 (37%), Gaps = 80/261 (30%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G G G+VY A + + +A+K S + +E EIE L K+ H NIVK Y
Sbjct: 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLL---EELLREIEILKKLNHPNIVKLY 57
Query: 488 GFCSHARHSILIYEYLKRGSLAT-------NLSNDAAA----------EEL--------D 522
G H L+ EY + GSL LS D E L D
Sbjct: 58 GVFEDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRD 117
Query: 523 ISSKNVLLD-LEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP-------DYRKKCDV 574
+ +N+LLD K ++DFG++K L D S +VGT Y+AP Y +K D+
Sbjct: 118 LKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDI 177
Query: 575 YSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634
+S V+ E L E+ D LI
Sbjct: 178 WSLGVILYE------------------------LPELKD-------------LIR----- 195
Query: 635 FSCLDVSPESRPTMQTITQQL 655
L PE RP+ + I + L
Sbjct: 196 -KMLQKDPEKRPSAKEILEHL 215
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215 |
| >gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 63/256 (24%), Positives = 97/256 (37%), Gaps = 43/256 (16%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G G G VY A + + + +A+K D++ EI+ L K++H NIV+ Y
Sbjct: 7 LGEGSFGKVYLARDKKTGKLVAIKVIK---KKKIKKDRERILREIKILKKLKHPNIVRLY 63
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISS---------------------- 525
L+ EY + G L L E +
Sbjct: 64 DVFEDEDKLYLVMEYCEGGDLFDLLKKRGRLSEDEARFYLRQILSALEYLHSKGIVHRDL 123
Query: 526 K--NVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DYRKKCDVYSF 577
K N+LLD + ++DFG+A+ L P + VGT Y+AP Y K D++S
Sbjct: 124 KPENILLDEDGHVKLADFGLARQLDPGEKLTT-FVGTPEYMAPEVLLGKGYGKAVDIWSL 182
Query: 578 RVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSC 637
V+ E++ GK P F + P PPP D+ + ++
Sbjct: 183 GVILYELLTGKPP--FPGDDQLL---ELFKKIGKPKPPFPPPEWDISPEAKDLIR---KL 234
Query: 638 LDVSPESRPTMQTITQ 653
L PE R T + Q
Sbjct: 235 LVKDPEKRLTAEEALQ 250
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254 |
| >gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 3e-27
Identities = 69/271 (25%), Positives = 107/271 (39%), Gaps = 63/271 (23%)
Query: 429 IGSGRHGSVYRAEL-PSKEFL----AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G G VY+ L E AVK +++EF E + K+ H NI
Sbjct: 7 LGEGAFGEVYKGTLKGDGEGTETKVAVKTLK---EGASEEEREEFLEEASIMKKLSHPNI 63
Query: 484 VKFYGFCSHARHSILIYEYLKRGSL-------ATNLSN--------DAAA--EEL----- 521
V+ G C+ ++ EY+ G L L+ A E L
Sbjct: 64 VRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKGMEYLESKNF 123
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY---RYVAP---DYRK-- 570
D++++N L+ +SDFG+++ + D + G +++AP K
Sbjct: 124 VHRDLAARNCLVTENLVVKISDFGLSRDIYED-DYYRKRGGGKLPIKWMAPESLKDGKFT 182
Query: 571 -KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLD--PRLPPPS--PDVQ 624
K DV+SF VL E+ G+ P P + N + E+L+ RLP P PD
Sbjct: 183 SKSDVWSFGVLLWEIFTLGE---------QPYPGMSNEEVLELLEDGYRLPRPENCPD-- 231
Query: 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+L +M C PE RPT + + L
Sbjct: 232 -ELYELML---QCWAYDPEDRPTFSELVEDL 258
|
Length = 258 |
| >gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 5e-23
Identities = 64/279 (22%), Positives = 105/279 (37%), Gaps = 72/279 (25%)
Query: 429 IGSGRHGSVYRAEL---PSKEFL-AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G G G VY+ +L K AVK + ++K+F E + K+ H N+V
Sbjct: 3 LGEGAFGEVYKGKLKGKDGKTTEVAVK---TLKEDASEEERKDFLKEARVMKKLGHPNVV 59
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLSN-----------------------DAAA--- 518
+ G C+ L+ EY++ G L L A
Sbjct: 60 RLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGME 119
Query: 519 --EEL-----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY---RYVAP-- 566
D++++N L+ + +SDFG+++ + D + G R++AP
Sbjct: 120 YLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDV-YDDDYYRKKTGGKLPIRWMAPES 178
Query: 567 -DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP-----RL 616
K DV+SF VL E+ G P + +E+L+ RL
Sbjct: 179 LKDGIFTSKSDVWSFGVLLWEIFTLGATPYP------------GLSNEEVLEYLRKGYRL 226
Query: 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P P +L +M SC + PE RPT + ++L
Sbjct: 227 PKP-EYCPDELYELML---SCWQLDPEDRPTFSELVERL 261
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262 |
| >gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 9e-23
Identities = 65/266 (24%), Positives = 106/266 (39%), Gaps = 54/266 (20%)
Query: 428 CIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKF 486
+G G GSVY A + E +AVK L D + + EI L+ ++H NIV++
Sbjct: 7 LLGRGSFGSVYLALDKDTGELMAVKS--VELSGDSEEELEALEREIRILSSLQHPNIVRY 64
Query: 487 YGFC-SHARHSILIY-EYLKRGSLATNLSNDAAAEEL----------------------- 521
YG ++++ I+ EY+ GSL++ L E
Sbjct: 65 YGSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSNGIVH 124
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA---LVGTYRYVAP------DYRKK 571
DI N+L+D + ++DFG AK L D + GT ++AP +Y +
Sbjct: 125 RDIKGANILVDSDGVVKLADFGCAKRLG-DIETGEGTGSVRGTPYWMAPEVIRGEEYGRA 183
Query: 572 CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP-PSPDVQGKLISI 630
D++S +E+ GK P S + + + P +P S + +
Sbjct: 184 ADIWSLGCTVIEMATGKPP---WSELGNPMAALYKIGSSGEPPEIPEHLSEEAK------ 234
Query: 631 MEVAFSCLDVSPESRPTMQTITQQLL 656
+ CL P+ RPT +LL
Sbjct: 235 -DFLRKCLRRDPKKRPT----ADELL 255
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260 |
| >gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 3e-21
Identities = 69/266 (25%), Positives = 112/266 (42%), Gaps = 58/266 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IG G G VY+ L +AVK S LP D +++F E E L + H NIVK G
Sbjct: 3 IGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPD---LKRKFLQEAEILKQYDHPNIVKLIG 59
Query: 489 FCSHARHSILIYEYLKRGSLATNL---------------SNDAAAEEL----------DI 523
C + ++ E + GSL T L S DAAA D+
Sbjct: 60 VCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDL 119
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT----YRYVAPD------YRKKCD 573
+++N L+ + +SDFG+++ + + ++ G ++ AP+ Y + D
Sbjct: 120 AARNCLVGENNVLKISDFGMSR--EEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESD 177
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDVQGKLIS 629
V+S+ +L E F P P + N + E ++ R+P P P+ ++
Sbjct: 178 VWSYGILLWET--------FSLGDTPYPGMSNQQTRERIESGYRMPAPQLCPE---EIYR 226
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+M C PE+RP+ I +L
Sbjct: 227 LML---QCWAYDPENRPSFSEIYNEL 249
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251 |
| >gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 1e-20
Identities = 72/269 (26%), Positives = 111/269 (41%), Gaps = 54/269 (20%)
Query: 422 DFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
F+ IG G G VY+A + + +A+K L S + +++ EI+ L K +H
Sbjct: 1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVI--KLESKE--KKEKIINEIQILKKCKH 56
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN--------DAAA---EEL-------- 521
NIVK+YG ++ E+ GSL L + A E L
Sbjct: 57 PNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHS 116
Query: 522 ------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DYR 569
DI + N+LL + + + DFG++ L D+ + +VGT ++AP Y
Sbjct: 117 NGIIHRDIKAANILLTSDGEVKLIDFGLSAQLS-DTKARNTMVGTPYWMAPEVINGKPYD 175
Query: 570 KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
K D++S + A+E+ +GK P S LP + PP + S
Sbjct: 176 YKADIWSLGITAIELAEGKPPY----SELPPMKAL------FKIATNGPP-GLRNPEKWS 224
Query: 630 IMEVAF--SCLDVSPESRPTMQTITQQLL 656
F CL +PE RPT +QLL
Sbjct: 225 DEFKDFLKKCLQKNPEKRPT----AEQLL 249
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253 |
| >gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 3e-18
Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 42/204 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFF-----AEIEALTKIRHRN 482
IGSG GSVY S E +AVK+ P S D+K EI L +++H N
Sbjct: 8 IGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHEN 67
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------------------- 521
IV++ G A H + EY+ GS+A L+N A EE
Sbjct: 68 IVQYLGSSLDADHLNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNRGI 127
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS------ALVGTYRYVAPD----- 567
DI N+L+D + +SDFGI+K L+ +S + +L G+ ++AP+
Sbjct: 128 IHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQT 187
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
Y +K D++S L +E++ GKHP
Sbjct: 188 SYTRKADIWSLGCLVVEMLTGKHP 211
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267 |
| >gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 3e-18
Identities = 69/252 (27%), Positives = 109/252 (43%), Gaps = 49/252 (19%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIAD-QKEFFAEIEALTKIRH---RNI 483
IG G +G+VYR +P+ +A+K N P D ++D Q+E + L+++R NI
Sbjct: 9 IGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQRE----VALLSQLRQSQPPNI 64
Query: 484 VKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAE--------EL-------------- 521
K+YG +I EY + GS+ T + AE E+
Sbjct: 65 TKYYGSYLKGPRLWIIMEYAEGGSVRTLMKAGPIAEKYISVIIREVLVALKYIHKVGVIH 124
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKCD 573
DI + N+L+ + DFG+A L +SS S VGT ++AP+ Y K D
Sbjct: 125 RDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKAD 184
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEV 633
++S + E+ G P S + + + ML P+ PP + G + E
Sbjct: 185 IWSLGITIYEMATGNPPY----SDVDAFRAM------MLIPKSKPPRLEDNGYSKLLREF 234
Query: 634 AFSCLDVSPESR 645
+CLD P+ R
Sbjct: 235 VAACLDEEPKER 246
|
Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277 |
| >gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 58/268 (21%), Positives = 98/268 (36%), Gaps = 48/268 (17%)
Query: 422 DFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
++ IG G G VY + +K+ + L + ++++ E++ L K+ H
Sbjct: 1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEID--LSNMSEKEREDALNEVKILKKLNH 58
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------- 521
NI+K+Y ++ EY G L+ + +
Sbjct: 59 PNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKY 118
Query: 522 ---------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI +N+ L + DFGI+K L +VGT Y++P+
Sbjct: 119 LHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNK 178
Query: 568 -YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
Y K D++S + E+ KHP F L + L P S +++
Sbjct: 179 PYNYKSDIWSLGCVLYELCTLKHP--FEGENL--LELALKILKGQYPPIPSQYSSELR-N 233
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQ 654
L+S S L PE RP++ I Q
Sbjct: 234 LVS------SLLQKDPEERPSIAQILQS 255
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258 |
| >gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 5e-17
Identities = 66/271 (24%), Positives = 107/271 (39%), Gaps = 52/271 (19%)
Query: 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+D + +G G G VY+ P+ + A+KK + +K+ E++ L
Sbjct: 1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVD---GDEEFRKQLLRELKTLRSCE 57
Query: 480 HRNIVKFYG-FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL----------------- 521
+VK YG F SI++ EY+ GSLA L E
Sbjct: 58 SPYVVKCYGAFYKEGEISIVL-EYMDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLH 116
Query: 522 --------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
DI N+L++ + + ++DFGI+K L+ + VGT Y++P+
Sbjct: 117 TKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGES 176
Query: 568 YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627
Y D++S + LE GK P F+ PS E++ P P + +
Sbjct: 177 YSYAADIWSLGLTLLECALGKFP--FLPPGQPSFF-------ELMQAICDGPPPSLPAEE 227
Query: 628 ISIMEVAF--SCLDVSPESRPTMQTITQQLL 656
S F +CL P+ RP+ +LL
Sbjct: 228 FSPEFRDFISACLQKDPKKRPS----AAELL 254
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264 |
| >gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 9e-17
Identities = 74/286 (25%), Positives = 105/286 (36%), Gaps = 76/286 (26%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G G V + E +AVK N +D F EIE L + H NI
Sbjct: 12 LGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSD---FEREIEILRTLDHENI 68
Query: 484 VKFYGFC--SHARHSILIYEYLKRGSLATNLSNDAAAEEL-------------------- 521
VK+ G C R LI EYL GSL L L
Sbjct: 69 VKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQ 128
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYV-----------A 565
D++++N+L++ E +SDFG+AK L D Y YV A
Sbjct: 129 RYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKD--------YYYVKEPGESPIFWYA 180
Query: 566 PDYRKKC------DVYSFRVLALEVI----KGKHPRG-FVSSILPSPSV-INMRLDEMLD 613
P+ + DV+SF V E+ + P F+ I + I RL E+L
Sbjct: 181 PECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLK 240
Query: 614 P--RLPPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
RLP P PD + ++ C + P+ RP+ + +
Sbjct: 241 EGERLPRPPSCPD------EVYDLMKLCWEAEPQDRPSFADLILIV 280
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284 |
| >gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 2e-16
Identities = 64/261 (24%), Positives = 119/261 (45%), Gaps = 50/261 (19%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+GSG G V+ ++ +A+K L SD + Q++F E++AL ++RH++++ +
Sbjct: 14 LGSGYFGEVWEGLWKNRVRVAIKI----LKSDDLLKQQDFQKEVQALKRLRHKHLISLFA 69
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN------------DAAAE--------------ELD 522
CS +I E +++GSL L + D A + D
Sbjct: 70 VCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRD 129
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYS 576
++++N+L+ + V+DFG+A+ +K D S Y++ AP+ + K DV+S
Sbjct: 130 LAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGTFSTKSDVWS 189
Query: 577 FRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLISIMEVA 634
F +L E+ G V P P + N + + + R+P P+ Q I ++
Sbjct: 190 FGILLYEMFT----YGQV----PYPGMNNHEVYDQITAGYRMPCPAKCPQ----EIYKIM 237
Query: 635 FSCLDVSPESRPTMQTITQQL 655
C PE RP+ + + ++L
Sbjct: 238 LECWAAEPEDRPSFKALREEL 258
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261 |
| >gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 65/261 (24%), Positives = 107/261 (40%), Gaps = 50/261 (19%)
Query: 428 CIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKF 486
IG G G VY+ L + +F+A+K+ + L + K EI+ L ++H NIVK+
Sbjct: 7 LIGRGAFGVVYKGLNLETGDFVAIKQIS--LEKIKEEALKSIMQEIDLLKNLKHPNIVKY 64
Query: 487 YGFCSHARHSILIYEYLKRGSLATNLSN-DAAAEEL-----------------------D 522
G + +I EY + GSL + E L D
Sbjct: 65 IGSIETSDSLYIILEYAENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQGVIHRD 124
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DYRKKCDVYS 576
I + N+L + ++DFG+A L S + +++VGT ++AP D++S
Sbjct: 125 IKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWS 184
Query: 577 FRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP-SPDVQGKLISIMEVAF 635
+E++ G P + P ++ + D+ P LP SP+++ L
Sbjct: 185 LGCTVIELLTGNPP---YYDLNPMAALFRIVQDDH--PPLPEGISPELKDFL-------M 232
Query: 636 SCLDVSPESRPTMQTITQQLL 656
C P RPT +QLL
Sbjct: 233 QCFQKDPNLRPT----AKQLL 249
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254 |
| >gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 3e-16
Identities = 69/264 (26%), Positives = 118/264 (44%), Gaps = 56/264 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ + +AVK D K+F AE + + K+RH +++ Y
Sbjct: 14 LGAGQFGEVWEGLWNNTTPVAVKTLKP-----GTMDPKDFLAEAQIMKKLRHPKLIQLYA 68
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDA------------AAE--------EL------D 522
C+ ++ E +K GSL L A AA+ E D
Sbjct: 69 VCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRD 128
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK---KCD 573
++++NVL+ + V+DFG+A+ +K D + A G ++ AP+ Y + K D
Sbjct: 129 LAARNVLVGENNICKVADFGLARVIKEDI--YEAREGAKFPIKWTAPEAALYNRFSIKSD 186
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLISIM 631
V+SF +L E++ + R +P P + N + + +D R+P P P +L IM
Sbjct: 187 VWSFGILLTEIV--TYGR------MPYPGMTNAEVLQQVDQGYRMPCP-PGCPKELYDIM 237
Query: 632 EVAFSCLDVSPESRPTMQTITQQL 655
C P+ RPT +T+ +L
Sbjct: 238 ---LDCWKEDPDDRPTFETLQWKL 258
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261 |
| >gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 5e-16
Identities = 70/265 (26%), Positives = 106/265 (40%), Gaps = 64/265 (24%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVK--KFNSPLPS--DQIADQKEFFAEIEALTKIRHRNI 483
IG G G VY A L + E +AVK + P +IAD E++ L ++H N+
Sbjct: 8 IGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIAD------EMKVLELLKHPNL 61
Query: 484 VKFYGFCSHARHSILIY-EYLKRGSLATNLSNDAAAEEL--------------------- 521
VK+YG H R + I+ EY G+L L + +E
Sbjct: 62 VKYYGVEVH-REKVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSHGI 120
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDS----SNWSALVGTYRYVAPD------- 567
DI N+ LD + DFG A LK ++ +L GT Y+AP+
Sbjct: 121 VHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKG 180
Query: 568 --YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP---SPD 622
+ + D++S + LE+ GK P S L + I + P +P SP+
Sbjct: 181 KGHGRAADIWSLGCVVLEMATGKRP----WSELDNEFQIMFHVGAGHKPPIPDSLQLSPE 236
Query: 623 VQGKLISIMEVAFSCLDVSPESRPT 647
+ + CL+ P+ RPT
Sbjct: 237 GK-DFLD------RCLESDPKKRPT 254
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264 |
| >gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 5e-16
Identities = 66/264 (25%), Positives = 111/264 (42%), Gaps = 55/264 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+GSG+ G V+ + K +A+K S+ +F E + + K+ H N+V+ YG
Sbjct: 12 LGSGQFGVVHLGKWRGKIDVAIKMIREGAMSED-----DFIEEAKVMMKLSHPNLVQLYG 66
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDA---AAEEL----------------------DI 523
C+ R ++ EY+ G L L E L D+
Sbjct: 67 VCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHRDL 126
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCDV 574
+++N L+ ++ VSDFG+A+++ D +++ GT ++ P+ + K DV
Sbjct: 127 AARNCLVGEDNVVKVSDFGLARYVLDD--QYTSSQGTKFPVKWAPPEVFDYSRFSSKSDV 184
Query: 575 YSFRVLALEVI-KGKHP-RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
+SF VL EV +GK P F +S + RL P+L P +
Sbjct: 185 WSFGVLMWEVFSEGKMPYERFSNSEVVESVSAGYRLYR---PKLAPT---------EVYT 232
Query: 633 VAFSCLDVSPESRPTMQTITQQLL 656
+ +SC PE RP + + QL
Sbjct: 233 IMYSCWHEKPEDRPAFKKLLSQLT 256
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256 |
| >gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 75/270 (27%), Positives = 115/270 (42%), Gaps = 55/270 (20%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
FD +G G +GSVY+A + + +A+K +P + D +E EI L +
Sbjct: 3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKV----VPVE--EDLQEIIKEISILKQCD 56
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSL--ATNLSNDAAAEE----------------- 520
IVK+YG ++ EY GS+ ++N EE
Sbjct: 57 SPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLH 116
Query: 521 ------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DY 568
DI + N+LL+ E +A ++DFG++ L + + ++GT ++AP Y
Sbjct: 117 SNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY 176
Query: 569 RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
K D++S + A+E+ +GK P S I P MR M+ P PPP+ K
Sbjct: 177 NNKADIWSLGITAIEMAEGKPPY---SDIHP------MRAIFMI-PNKPPPTLSDPEKW- 225
Query: 629 SIMEVAF--SCLDVSPESRPTMQTITQQLL 656
S F CL PE RP+ QLL
Sbjct: 226 SPEFNDFVKKCLVKDPEERPS----AIQLL 251
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256 |
| >gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 2e-15
Identities = 66/277 (23%), Positives = 110/277 (39%), Gaps = 69/277 (24%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+ IG G G V + ++ +AVK L D A Q F AE +T +R
Sbjct: 5 SKELKLGATIGKGEFGDVMLGDYRGQK-VAVKC----LKDDSTAAQA-FLAEASVMTTLR 58
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNL----------------SNDAAA----- 518
H N+V+ G ++ EY+ +GSL L + D
Sbjct: 59 HPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYL 118
Query: 519 EE-----LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD---- 567
EE D++++NVL+ + A VSDFG+AK ++ G ++ AP+
Sbjct: 119 EEKNFVHRDLAARNVLVSEDLVAKVSDFGLAK-----EASQGQDSGKLPVKWTAPEALRE 173
Query: 568 --YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP-----RLPPPS 620
+ K DV+SF +L E+ + +P P + L +++ R+ P
Sbjct: 174 KKFSTKSDVWSFGILLWEI--------YSFGRVPYP---RIPLKDVVPHVEKGYRMEAPE 222
Query: 621 --PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P + +V C ++ P RPT + + +QL
Sbjct: 223 GCPP------EVYKVMKDCWELDPAKRPTFKQLREQL 253
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256 |
| >gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 68/268 (25%), Positives = 113/268 (42%), Gaps = 51/268 (19%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKE------FFAEIEALTKIRHR 481
IG G +G VY A + + E +AVK+ P D ++ +EIE L + H
Sbjct: 9 IGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHL 68
Query: 482 NIVKFYGFCSHARHSILIY-EYLKRGSLATNLSNDAAAEE-------------------- 520
NIV++ GF + I+ EY+ GS+ + L EE
Sbjct: 69 NIVQYLGF-ETTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHSK 127
Query: 521 ----LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV--GTYRYVAPD------- 567
D+ + N+L+D + +SDFGI+K N + G+ ++AP+
Sbjct: 128 GILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQ 187
Query: 568 -YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
Y K D++S + LE+ G+ P +I + N R PP PDV
Sbjct: 188 GYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKR-------SAPPIPPDVSMN 240
Query: 627 LISI-MEVAFSCLDVSPESRPTMQTITQ 653
L + ++ +C ++P++RPT + + Q
Sbjct: 241 LSPVALDFLNACFTINPDNRPTARELLQ 268
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272 |
| >gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 61/278 (21%), Positives = 113/278 (40%), Gaps = 63/278 (22%)
Query: 422 DFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
D++ IG G G+V + + L K+ + +++ ++++ +E+ L +++H
Sbjct: 1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEK--EKQQLVSEVNILRELKH 58
Query: 481 RNIVKFYG-FCSHARHSILIY-EYLKRGSLATNLS-----NDAAAEEL------------ 521
NIV++Y + ++ I EY + G LA + EE
Sbjct: 59 PNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLAL 118
Query: 522 ----------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVA 565
D+ N+ LD + + DFG+AK L DSS VGT Y++
Sbjct: 119 YECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMS 178
Query: 566 PD------YRKKCDVYSFRVLALEVIKGKHP---RGFVSSILPSPSVINMRLDEMLDPRL 616
P+ Y +K D++S L E+ P R + + ++ E R+
Sbjct: 179 PEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQLQ--------LASKIKEGKFRRI 230
Query: 617 PPP-SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
P S ++ ++I S L+V P+ RP+ + + Q
Sbjct: 231 PYRYSSELN-EVIK------SMLNVDPDKRPSTEELLQ 261
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265 |
| >gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 77.5 bits (189), Expect = 4e-15
Identities = 62/284 (21%), Positives = 100/284 (35%), Gaps = 48/284 (16%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH-RNIVKFY 487
+G G G VY A ++ +A+K L S + + F EI+ L + H NIVK Y
Sbjct: 8 LGEGSFGEVYLAR--DRKLVALKVLAKKLESKS-KEVERFLREIQILASLNHPPNIVKLY 64
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------------------------- 521
F L+ EY+ GSL L L
Sbjct: 65 DFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIH 124
Query: 522 -DISSKNVLLDLE-HKAHVSDFGIAKFLKPDSSN------WSALVGTYRYVAPD------ 567
DI +N+LLD + + DFG+AK L S S VGT Y+AP+
Sbjct: 125 RDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLS 184
Query: 568 ---YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624
D++S + E++ G P + + + + L+ P SP
Sbjct: 185 LAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNP 244
Query: 625 GKLIS-IMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
+ ++ L P++R + + L + + +
Sbjct: 245 ELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLAHLKLKESDL 288
|
Length = 384 |
| >gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 2e-14
Identities = 65/264 (24%), Positives = 115/264 (43%), Gaps = 57/264 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+GSG+ G V+ + ++ +A+K N S++ +F E + + K+ H +V+ YG
Sbjct: 12 LGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEE-----DFIEEAKVMMKLSHPKLVQLYG 66
Query: 489 FCSHARHSILIYEYLKRGSLAT-------NLSNDA----------AAEEL--------DI 523
C+ + ++ E+++ G L LS D E L D+
Sbjct: 67 VCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDL 126
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPD---SSNWSALVGTYRYVAPD------YRKKCDV 574
+++N L+ VSDFG+ +++ D SS+ + ++ P+ Y K DV
Sbjct: 127 AARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKF--PVKWSPPEVFNFSKYSSKSDV 184
Query: 575 YSFRVLALEVI-KGKHPRGFVSSILPSPSVINM--RLDEMLDPRLPPPSPDVQGKLISIM 631
+SF VL EV +GK P S+ V+ M R + P+L +++
Sbjct: 185 WSFGVLMWEVFTEGKMPFEKKSNY----EVVEMISRGFRLYRPKLAS---------MTVY 231
Query: 632 EVAFSCLDVSPESRPTMQTITQQL 655
EV +SC PE RPT + + +
Sbjct: 232 EVMYSCWHEKPEGRPTFAELLRAI 255
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256 |
| >gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 3e-14
Identities = 70/269 (26%), Positives = 101/269 (37%), Gaps = 61/269 (22%)
Query: 429 IGSGRHGSV----YRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G G GSV Y + + +AVK A +KEF E + ++ H IV
Sbjct: 3 LGHGNFGSVVKGVYLMKSGKEVEVAVKTLK---QEHIAAGKKEFLREASVMAQLDHPCIV 59
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDI--------------------- 523
+ G C +L+ E G L L D+
Sbjct: 60 RLIGVCK-GEPLMLVMELAPLGPLLKYLKKRREIPVSDLKELAHQVAMGMAYLESKHFVH 118
Query: 524 ---SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG---TYRYVAPD---YRK---K 571
+++NVLL H+A +SDFG+++ L S + A ++ AP+ Y K K
Sbjct: 119 RDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKFSSK 178
Query: 572 CDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDVQGK 626
DV+S+ V E G P G + VI ML+ RLP P P +
Sbjct: 179 SDVWSYGVTLWEAFSYGAKPYGEMK----GAEVI-----AMLESGERLPRPEECPQ---E 226
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ SIM SC PE RPT +
Sbjct: 227 IYSIML---SCWKYRPEDRPTFSELESTF 252
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257 |
| >gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 53/255 (20%)
Query: 428 CIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIAD-QKEFFAEIEALTKIRHRNIVK 485
CIG G G VY+A + + + +A+K + D+I D Q+ EI+ L++ R I K
Sbjct: 8 CIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQ----EIQFLSQCRSPYITK 63
Query: 486 FYGFCSHARHSIL--IYEYLKRGSLAT-----NLSNDAAAEEL----------------- 521
+YG S + S L I EY GS L A L
Sbjct: 64 YYG--SFLKGSKLWIIMEYCGGGSCLDLLKPGKLDETYIAFILREVLLGLEYLHEEGKIH 121
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DYRKKCDV 574
DI + N+LL E ++DFG++ L S + VGT ++AP Y +K D+
Sbjct: 122 RDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADI 181
Query: 575 YSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS--IME 632
+S + A+E+ KG+ P S + P MR+ L P+ PPS ++G S +
Sbjct: 182 WSLGITAIELAKGEPPL---SDLHP------MRV-LFLIPKNNPPS--LEGNKFSKPFKD 229
Query: 633 VAFSCLDVSPESRPT 647
CL+ P+ RP+
Sbjct: 230 FVSLCLNKDPKERPS 244
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274 |
| >gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 4e-14
Identities = 74/268 (27%), Positives = 123/268 (45%), Gaps = 55/268 (20%)
Query: 429 IGSGRHGSVYRAEL--PSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG+G G V R L P K F+A+K S Q +++F +E + + H NI+
Sbjct: 12 IGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQ---RRDFLSEASIMGQFDHPNII 68
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-NDAAAEEL---------------------- 521
G + +R ++I E+++ G+L + L ND +
Sbjct: 69 HLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNYV 128
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN---WSALVGT--YRYVAPD---YRK- 570
D++++N+L++ VSDFG+++FL+ D+S+ S+L G R+ AP+ YRK
Sbjct: 129 HRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKF 188
Query: 571 --KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627
DV+S+ ++ EV+ G+ P +S + VIN +++ D RLPPP D L
Sbjct: 189 TSASDVWSYGIVMWEVMSYGERPYWDMS----NQDVINA-IEQ--DYRLPPP-MDCPTAL 240
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655
+M C +RP I L
Sbjct: 241 HQLM---LDCWQKDRNARPKFGQIVSTL 265
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269 |
| >gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 63/274 (22%), Positives = 106/274 (38%), Gaps = 78/274 (28%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKE--FFAEIEALTKIRHRNIVK 485
IG G G VY+A + + + +A+KK + Q + EI + +H NIV
Sbjct: 27 IGEGASGEVYKATDRATGKEVAIKKMR-------LRKQNKELIINEILIMKDCKHPNIVD 79
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSND----------AAAEEL-------------- 521
+Y ++ EY+ GSL ++ + E+
Sbjct: 80 YYDSYLVGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQNVIH 139
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DYRKKCDV 574
DI S N+LL + ++DFG A L + S +++VGT ++AP DY K D+
Sbjct: 140 RDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDI 199
Query: 575 YSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEM---------LDPRLPPP---SPD 622
+S ++ +E+ +G+ P +R + P L P SP+
Sbjct: 200 WSLGIMCIEMAEGEPPY--------------LREPPLRALFLITTKGIPPLKNPEKWSPE 245
Query: 623 VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656
+ CL PE RP+ ++LL
Sbjct: 246 ----FKDFLN---KCLVKDPEKRPS----AEELL 268
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 2e-13
Identities = 32/91 (35%), Positives = 51/91 (56%)
Query: 151 LDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKI 210
L + + G I ++ K L ++N+S N+I +IP +G++++L DLS N G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 211 PKEFGKLNSLTKLILRGNQLIGHLPSEIGSL 241
P+ G+L SL L L GN L G +P+ +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGR 513
|
Length = 623 |
| >gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 67/263 (25%), Positives = 100/263 (38%), Gaps = 66/263 (25%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQ--KEFFAEIEALTKIRHRNIVK 485
+GSG GSVY L +F AVK+ + Q + K+ EI L+K++H NIV+
Sbjct: 8 LGSGSFGSVYEGLNLDDGDFFAVKEVSL-ADDGQTGQEAVKQLEQEIALLSKLQHPNIVQ 66
Query: 486 FYGFCSHARHSILIY-EYLKRGSLATNLSN-DAAAEEL---------------------- 521
+ G ++ I+ E + GSLA L + E +
Sbjct: 67 YLG-TEREEDNLYIFLELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDRNTVH 125
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKCDVYSFRV- 579
DI N+L+D ++DFG+AK + S S G+ ++AP+ + Y
Sbjct: 126 RDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKS-FKGSPYWMAPEVIAQQGGYGLAAD 184
Query: 580 ------LALEVIKGKHPRG------FVSSILPSPSVINMRLDEMLDPRLPPPSPD---VQ 624
LE+ GK P V I S + PP PD +
Sbjct: 185 IWSLGCTVLEMATGKPPWSQLEGVAAVFKIGRSKEL--------------PPIPDHLSDE 230
Query: 625 GKLISIMEVAFSCLDVSPESRPT 647
K I++ CL P RPT
Sbjct: 231 AKDF-ILK----CLQRDPSLRPT 248
|
Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258 |
| >gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 5e-13
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 42/210 (20%)
Query: 417 IRAINDFDAKYC----IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFA- 470
I ++ D KY IG G G+VY A ++ + + +A+K+ N Q +KE
Sbjct: 11 IVSVGDPKKKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNL---QQQ--PKKELIIN 65
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------- 520
EI + + +H NIV + ++ EYL GSL T++ + +E
Sbjct: 66 EILVMRENKHPNIVNYLDSYLVGDELWVVMEYLAGGSL-TDVVTETCMDEGQIAAVCREC 124
Query: 521 --------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
DI S N+LL ++ ++DFG + P+ S S +VGT ++AP
Sbjct: 125 LQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP 184
Query: 567 D------YRKKCDVYSFRVLALEVIKGKHP 590
+ Y K D++S ++A+E+++G+ P
Sbjct: 185 EVVTRKAYGPKVDIWSLGIMAIEMVEGEPP 214
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293 |
| >gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 5e-13
Identities = 69/267 (25%), Positives = 111/267 (41%), Gaps = 56/267 (20%)
Query: 429 IGSGRHGSVYRA--ELPSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G V R +LP K+ +A+K + Q D F E + + H NI+
Sbjct: 12 IGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLD---FLTEASIMGQFDHPNII 68
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNL-SNDA--AAEEL-------------------- 521
+ G + +R ++I EY++ GSL L ND +L
Sbjct: 69 RLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYV 128
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG--TYRYVAPD---YRK---K 571
D++++N+L++ VSDFG+++ L+ + ++ G R+ AP+ YRK
Sbjct: 129 HRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSA 188
Query: 572 CDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP--SPDVQGKLI 628
DV+SF ++ EV+ G+ P + + VI D RLPPP P
Sbjct: 189 SDVWSFGIVMWEVMSYGERPYW----DMSNQDVIKAVED---GYRLPPPMDCPSA----- 236
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQL 655
+ ++ C RPT I L
Sbjct: 237 -LYQLMLDCWQKDRNERPTFSQIVSTL 262
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 8e-13
Identities = 74/204 (36%), Positives = 100/204 (49%), Gaps = 8/204 (3%)
Query: 107 GNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNW 166
N R I + L NL + L+ NN+ + NL LD+SDN + S
Sbjct: 102 LNRLRSNISELLEL-TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPL 159
Query: 167 GKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILR 226
P L L++S N+++ +P + NLS LN DLS N I +P E L++L +L L
Sbjct: 160 RNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLS 217
Query: 227 GNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL 286
N +I L S + +L L L LS N+ L PES+GNL L LDLS Q I + L
Sbjct: 218 NNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQ-ISSISS-L 273
Query: 287 GKLVQLSELELSHNFLGREIPSQI 310
G L L EL+LS N L +P
Sbjct: 274 GSLTNLRELDLSGNSLSNALPLIA 297
|
Length = 394 |
| >gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 8e-13
Identities = 70/258 (27%), Positives = 112/258 (43%), Gaps = 48/258 (18%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G VY+ + +KE +A+K + D+I D ++ EI L++ I ++Y
Sbjct: 12 IGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQ---EITVLSQCDSPYITRYY 68
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------DI 523
G +I EYL GS A +L EE DI
Sbjct: 69 GSYLKGTKLWIIMEYLGGGS-ALDLLKPGPLEETYIATILREILKGLDYLHSERKIHRDI 127
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSF 577
+ NVLL + ++DFG+A L + VGT ++AP+ Y K D++S
Sbjct: 128 KAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSL 187
Query: 578 RVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS-IMEVAFS 636
+ A+E+ KG+ P S + P MR+ L P+ PP+ ++G+ E +
Sbjct: 188 GITAIELAKGEPPN---SDLHP------MRV-LFLIPKNSPPT--LEGQYSKPFKEFVEA 235
Query: 637 CLDVSPESRPTMQTITQQ 654
CL+ P RPT + + +
Sbjct: 236 CLNKDPRFRPTAKELLKH 253
|
Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277 |
| >gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 8e-13
Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 57/224 (25%)
Query: 468 FFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------------D 515
F E + + K+RH +V+ Y CS ++ EY+ +GSL L + D
Sbjct: 48 FLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVD 107
Query: 516 AAA---------EEL-----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT- 560
AA E D++++N+L+ ++DFG+A+ ++ D ++A G
Sbjct: 108 MAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDE--YTAREGAK 165
Query: 561 --YRYVAPD---YRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEM 611
++ AP+ Y + K DV+SF +L E++ G+ +P P + N + E
Sbjct: 166 FPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGR---------VPYPGMTNREVLEQ 216
Query: 612 LDP--RLPPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
++ R+P P P+ + ++ C D PE RPT + +
Sbjct: 217 VERGYRMPRPPNCPE------ELYDLMLQCWDKDPEERPTFEYL 254
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261 |
| >gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 9e-13
Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 55/263 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG+ G V+ K +A+K S++ +F E + + K+ H +V+ YG
Sbjct: 12 IGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEE-----DFIEEAQVMMKLSHPKLVQLYG 66
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDA---AAEEL----------------------DI 523
C+ L++E+++ G L+ L + E L D+
Sbjct: 67 VCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDL 126
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCDV 574
+++N L+ VSDFG+ +F+ D +++ GT ++ +P+ Y K DV
Sbjct: 127 AARNCLVGENQVVKVSDFGMTRFVLDD--QYTSSTGTKFPVKWSSPEVFSFSKYSSKSDV 184
Query: 575 YSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLD-EMLDPRLPPPSPDVQGKLISIME 632
+SF VL EV +GK P S+ S V + + PRL S+ E
Sbjct: 185 WSFGVLMWEVFSEGKTPYENRSN---SEVVETINAGFRLYKPRLASQ---------SVYE 232
Query: 633 VAFSCLDVSPESRPTMQTITQQL 655
+ C PE RP+ + QL
Sbjct: 233 LMQHCWKERPEDRPSFSLLLHQL 255
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256 |
| >gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-12
Identities = 61/270 (22%), Positives = 106/270 (39%), Gaps = 54/270 (20%)
Query: 422 DFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
DF+ IG G G V++ + K A+K+ + L +++E E L K+
Sbjct: 1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQID--LSKMNRREREEAIDEARVLAKLDS 58
Query: 481 RNIVKFY-GFCSHARHSILIYEYLKRGSLATNLSNDAA---AEEL--------------- 521
I+++Y F + +I++ EY + G L L E+
Sbjct: 59 SYIIRYYESFLDKGKLNIVM-EYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHL 117
Query: 522 --------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
DI S N+ LD + D G+AK L +++ + +VGT Y++P+
Sbjct: 118 HSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKP 177
Query: 568 YRKKCDVYSFRVLALEVIKGKHP---RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624
Y +K DV++ V+ E GKHP + IL +++ PP S
Sbjct: 178 YNEKSDVWALGVVLYECCTGKHPFDANNQGALIL-----------KIIRGVFPPVSQMYS 226
Query: 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQ 654
+L +++ CL RP + +
Sbjct: 227 QQLAQLID---QCLTKDYRQRPDTFQLLRN 253
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256 |
| >gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 60/217 (27%)
Query: 429 IGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
+G G G V+ E KE +AVK +D +K+F E E LT +H N
Sbjct: 13 LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDA---RKDFEREAELLTNFQHEN 69
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSLATNL-----------SNDAAAEEL---------- 521
IVKFYG C+ I+++EY++ G L L S D+ EL
Sbjct: 70 IVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAV 129
Query: 522 DISSKNVLLDLEHKAH-----------------VSDFGIAKFLKPDSSNWSALVGT---- 560
I+S V L +H H + DFG+++ + ++++ + G
Sbjct: 130 QIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVY--TTDYYRVGGHTMLP 187
Query: 561 YRYVAPD---YRK---KCDVYSFRVLALEVIK-GKHP 590
R++ P+ YRK + DV+SF V+ E+ GK P
Sbjct: 188 IRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQP 224
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280 |
| >gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 69/276 (25%), Positives = 111/276 (40%), Gaps = 64/276 (23%)
Query: 422 DFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPL-PSDQIAD-QKEFFAEIEALTKI 478
D++ IGSG +G VY+A ++ + E +A+K L P D Q+E I L +
Sbjct: 4 DYELIQRIGSGTYGDVYKARDIATGELVAIKVI--KLEPGDDFEIIQQE----ISMLKEC 57
Query: 479 RHRNIVKFYGFCSHARHSIL--IYEYLKRGSLATNLS-NDAAAEELDIS--SKNVLLDLE 533
RH NIV ++G S+ R L + EY GSL EL I+ + L L
Sbjct: 58 RHPNIVAYFG--SYLRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLA 115
Query: 534 -----HKAH-----------------VSDFGIAKFLKPDSSNWSALVGTYRYVAP----- 566
K H ++DFG++ L + + +GT ++AP
Sbjct: 116 YLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAV 175
Query: 567 ----DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622
Y KCD+++ + A+E+ + + P + P MR ++ + P P
Sbjct: 176 ERKGGYDGKCDIWALGITAIELAELQPPM---FDLHP------MRALFLI-SKSNFPPPK 225
Query: 623 VQGKLISIMEVAF-----SCLDVSPESRPTMQTITQ 653
++ K F CL P+ RPT + Q
Sbjct: 226 LKDK--EKWSPVFHDFIKKCLTKDPKKRPTATKLLQ 259
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262 |
| >gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 67/264 (25%), Positives = 103/264 (39%), Gaps = 60/264 (22%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G VY A LP+ E +A+K+ + L Q E E++A+++ H N+VK+Y
Sbjct: 9 IGVGATAVVYAAICLPNNEKVAIKRID--LEKCQT-SVDELRKEVQAMSQCNHPNVVKYY 65
Query: 488 GFCSH-ARHSI-LIYEYLKRGSLA----TNLSNDAAAEEL-------------------- 521
S + L+ YL GSL ++ E +
Sbjct: 66 --TSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQ 123
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS----ALVGTYRYVAPD------- 567
DI + N+LL + ++DFG++ L VGT ++AP+
Sbjct: 124 IHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHG 183
Query: 568 YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS--PDVQG 625
Y K D++SF + A+E+ G P S P V+ + L PPS
Sbjct: 184 YDFKADIWSFGITAIELATGAAP----YSKYPPMKVLMLTLQN------DPPSLETGADY 233
Query: 626 KLIS--IMEVAFSCLDVSPESRPT 647
K S ++ CL P RPT
Sbjct: 234 KKYSKSFRKMISLCLQKDPSKRPT 257
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 3e-12
Identities = 72/264 (27%), Positives = 107/264 (40%), Gaps = 14/264 (5%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
LTNL L L +N +T + P +L +L L N+ SLPS + NL +L+ L L
Sbjct: 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N+LS +P + NL L L L N + +L I ALE + + N + L
Sbjct: 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS 229
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
N NL + L N + E+ G NL LD+S+N S+ G L L++S
Sbjct: 230 NLKNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQ--ISSISSLGSLTNLRELDLSG 286
Query: 180 NNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI 238
N+++ ++PL L +L L + KLNS+ + P +
Sbjct: 287 NSLSNALPLIALLLLLLELLLNLLLT-----LKALELKLNSILLNNNILSNGETSSPEAL 341
Query: 239 GSLTKLEFLNLSTNRFSSLIPESL 262
L L L N
Sbjct: 342 SILESLNNLWTLDNALDESNLNRY 365
|
Length = 394 |
| >gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 4e-12
Identities = 66/258 (25%), Positives = 111/258 (43%), Gaps = 48/258 (18%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V++ + +++ +A+K + D+I D ++ EI L++ + K+Y
Sbjct: 12 IGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQ---EITVLSQCDSPYVTKYY 68
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------DI 523
G +I EYL GS A +L +E DI
Sbjct: 69 GSYLKGTKLWIIMEYLGGGS-ALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDI 127
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSF 577
+ NVLL + ++DFG+A L + VGT ++AP+ Y K D++S
Sbjct: 128 KAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSL 187
Query: 578 RVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI-SIMEVAFS 636
+ A+E+ KG+ P S + P MR+ L P+ PP+ + G+ E +
Sbjct: 188 GITAIELAKGEPPN---SDMHP------MRV-LFLIPKNNPPT--LTGEFSKPFKEFIDA 235
Query: 637 CLDVSPESRPTMQTITQQ 654
CL+ P RPT + + +
Sbjct: 236 CLNKDPSFRPTAKELLKH 253
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277 |
| >gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 7e-12
Identities = 65/267 (24%), Positives = 109/267 (40%), Gaps = 57/267 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V + + +A+K S+ EF E + + K+ H +V+ YG
Sbjct: 12 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSED-----EFIEEAKVMMKLSHEKLVQLYG 66
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDA-----------------AAEEL--------DI 523
C+ R ++ EY+ G L L L D+
Sbjct: 67 VCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDL 126
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCDV 574
+++N L+D + VSDFG+++++ D +++ VG+ R+ P+ + K DV
Sbjct: 127 AARNCLVDDQGCVKVSDFGLSRYVLDDE--YTSSVGSKFPVRWSPPEVLLYSKFSSKSDV 184
Query: 575 YSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEV 633
++F VL EV GK P ++ V + P L K+ +IM
Sbjct: 185 WAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGL--RLYRPHL------ASEKVYAIM-- 234
Query: 634 AFSCLDVSPESRPTMQTITQQLLFSLV 660
+SC E RPT QQLL S+
Sbjct: 235 -YSCWHEKAEERPTF----QQLLSSIE 256
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256 |
| >gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 7e-12
Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 47/268 (17%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVK--KFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
+G+G S Y+A ++ + +AVK + S+Q + EI + ++ H +I++
Sbjct: 8 LGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIR 67
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------ 521
G H L E++ GS++ LS A +E
Sbjct: 68 MLGATCEDSHFNLFVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHENQIIHR 127
Query: 522 DISSKNVLLDLE-HKAHVSDFGIAKFLKPDSSN----WSALVGTYRYVAPD------YRK 570
D+ N+L+D + ++DFG A L + L+GT ++AP+ Y +
Sbjct: 128 DVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGR 187
Query: 571 KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP-SPDVQGKLIS 629
CDV+S + +E+ K P ++I P +P SP ++
Sbjct: 188 SCDVWSVGCVIIEMATAKPPWN-AEKHSNHLALIFKIASATTAPSIPEHLSPGLR----- 241
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQLLF 657
+V CL++ PE RP + + + +F
Sbjct: 242 --DVTLRCLELQPEDRPPSRELLKHPVF 267
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268 |
| >gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4 | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 64/283 (22%), Positives = 103/283 (36%), Gaps = 78/283 (27%)
Query: 429 IGSGRHGSVYRAELPSKE------FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
+G G G V+ A+ E + VK + Q EF E++ K+ H+N
Sbjct: 13 LGRGEFGEVFLAKAKGIEEEGGETLVLVKALQK---TKDENLQSEFRRELDMFRKLSHKN 69
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------------------- 521
+V+ G C A +I EY G L L + +E
Sbjct: 70 VVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALG 129
Query: 522 ------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY---RYVAP 566
D++++N L+ + + VS ++K +S + L R++AP
Sbjct: 130 MDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLSK--DVYNSEYYKLRNALIPLRWLAP 187
Query: 567 ------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML------DP 614
D+ K DV+SF VL EV F LP + + +E+L
Sbjct: 188 EAVQEDDFSTKSDVWSFGVLMWEV--------FTQGELPFYGLSD---EEVLNRLQAGKL 236
Query: 615 RLPPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
LP P P +L +M C V+P+ RP+ + L
Sbjct: 237 ELPVPEGCPS---RLYKLMT---RCWAVNPKDRPSFSELVSAL 273
|
Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275 |
| >gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 1e-11
Identities = 78/295 (26%), Positives = 125/295 (42%), Gaps = 75/295 (25%)
Query: 422 DFDAKYCIGSGRHGSVYRAEL----PSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEAL 475
D K +G G G V+ AE P+K+ +AVK P +A +K+F E E L
Sbjct: 6 DIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDP----TLAARKDFQREAELL 61
Query: 476 TKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNL---SNDA----------AAEEL- 521
T ++H +IVKFYG C I+++EY+K G L L DA A EL
Sbjct: 62 TNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELG 121
Query: 522 ---------DISSKNVLLDLEHKAH-----------------VSDFGIAKFLKPDSSNWS 555
I+S V L +H H + DFG+++ + S+++
Sbjct: 122 LSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVY--STDYY 179
Query: 556 ALVG----TYRYVAPD---YRK---KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVI 604
+ G R++ P+ YRK + DV+SF V+ E+ GK P +S+ +
Sbjct: 180 RVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECIT 239
Query: 605 NMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659
R+ E PR+ P + ++ C P+ R ++ I ++L +L
Sbjct: 240 QGRVLER--PRVCPK---------EVYDIMLGCWQREPQQRLNIKEI-YKILHAL 282
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291 |
| >gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 1e-11
Identities = 62/263 (23%), Positives = 108/263 (41%), Gaps = 53/263 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G G G V++ L K +AVK LP + + +F +E L + H NIVK G
Sbjct: 3 LGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQEL---KIKFLSEARILKQYDHPNIVKLIG 59
Query: 489 FCSHARHSILIYEYLKRGSLATNL---------------SNDAAAEEL----------DI 523
C+ + ++ E + G + L + DAAA D+
Sbjct: 60 VCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCIHRDL 119
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT-YRYVAPD------YRKKCDVYS 576
+++N L+ + +SDFG+++ + S L ++ AP+ Y + DV+S
Sbjct: 120 AARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYSSESDVWS 179
Query: 577 FRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDVQGKLISIME 632
+ +L E F + P P + N + E ++ R+ P PD + +
Sbjct: 180 YGILLWET--------FSLGVCPYPGMTNQQAREQVEKGYRMSCPQKCPD------DVYK 225
Query: 633 VAFSCLDVSPESRPTMQTITQQL 655
V C D PE+RP + ++L
Sbjct: 226 VMQRCWDYKPENRPKFSELQKEL 248
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250 |
| >gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2 | Back alignment and domain information |
|---|
Score = 65.5 bits (159), Expect = 1e-11
Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 42/210 (20%)
Query: 417 IRAINDFDAKYC----IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFA- 470
I +I D KY IG G G+V+ A ++ + + +A+K+ N Q +KE
Sbjct: 11 IVSIGDPKKKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINL-----QKQPKKELIIN 65
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------- 521
EI + ++++ NIV F ++ EYL GSL T++ + +E
Sbjct: 66 EILVMKELKNPNIVNFLDSFLVGDELFVVMEYLAGGSL-TDVVTETCMDEAQIAAVCREC 124
Query: 522 ---------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
DI S NVLL ++ ++DFG + P+ S S +VGT ++AP
Sbjct: 125 LQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAP 184
Query: 567 D------YRKKCDVYSFRVLALEVIKGKHP 590
+ Y K D++S ++A+E+++G+ P
Sbjct: 185 EVVTRKAYGPKVDIWSLGIMAIEMVEGEPP 214
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296 |
| >gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 2e-11
Identities = 67/268 (25%), Positives = 113/268 (42%), Gaps = 59/268 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFL-AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V+ L + AVK LP D A +F E L + H NIV+
Sbjct: 3 IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKA---KFLQEARILKQYSHPNIVRLI 59
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSN---------------DAAA--EEL--------D 522
G C+ + ++ E ++ G T L +AAA E L D
Sbjct: 60 GVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHCIHRD 119
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT----YRYVAPD------YRKKC 572
++++N L+ ++ +SDFG+++ + + +++ G ++ AP+ Y +
Sbjct: 120 LAARNCLVTEKNVLKISDFGMSR--EEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSES 177
Query: 573 DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDVQGKLI 628
DV+SF +L E F +P ++ N + E ++ RLP P PD +
Sbjct: 178 DVWSFGILLWEA--------FSLGAVPYANLSNQQTREAIEQGVRLPCPELCPD---AVY 226
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQLL 656
+ME C + P RP+ T+ Q+L
Sbjct: 227 RLME---RCWEYDPGQRPSFSTVHQELQ 251
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252 |
| >gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 3e-11
Identities = 70/291 (24%), Positives = 126/291 (43%), Gaps = 73/291 (25%)
Query: 422 DFDAKYCIGSGRHGSVYRAE----LPSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEAL 475
D K+ +G G G V+ AE LP ++ +AVK S + ++F E E L
Sbjct: 6 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESAR----QDFQREAELL 61
Query: 476 TKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNL------------SNDAAAEEL-- 521
T ++H++IV+FYG C+ R ++++EY++ G L L D A +L
Sbjct: 62 TVLQHQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTL 121
Query: 522 -------------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556
D++++N L+ + DFG+++ + S+++
Sbjct: 122 GQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIY--STDYYR 179
Query: 557 LVG----TYRYVAPD---YRK---KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVIN 605
+ G R++ P+ YRK + D++SF V+ E+ GK P +S+ +
Sbjct: 180 VGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECITQ 239
Query: 606 MRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656
R E+ PR PP ++ +IM+ C P+ R ++ I +L
Sbjct: 240 GR--ELERPRTCPP------EVYAIMQ---GCWQREPQQRMVIKDIHSRLQ 279
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280 |
| >gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 4e-11
Identities = 75/285 (26%), Positives = 116/285 (40%), Gaps = 74/285 (25%)
Query: 429 IGSGRHGSVYRAEL--------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
+G G GSV EL + E +AVKK L ++F EIE L ++H
Sbjct: 12 LGKGNFGSV---ELCRYDPLQDNTGEVVAVKK----LQHSTAEHLRDFEREIEILKSLQH 64
Query: 481 RNIVKFYGFC-SHARHSI-LIYEYLKRGSLATNLSNDAA-----------------AEEL 521
NIVK+ G C S R ++ L+ EYL GSL L E L
Sbjct: 65 DNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYL 124
Query: 522 --------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR--------YVA 565
D++++N+L++ E++ + DFG+ K L D + R + A
Sbjct: 125 GSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYY-----KVREPGESPIFWYA 179
Query: 566 PD------YRKKCDVYSFRVLALEVI----KGKHP-RGFVSSILPS--PSVINMRLDEML 612
P+ + DV+SF V+ E+ K P F+ + +I L E+L
Sbjct: 180 PESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELL 239
Query: 613 DP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
RLP P P ++ +IM+ C + P RP+ + Q+
Sbjct: 240 KNNGRLPAP-PGCPAEIYAIMK---ECWNNDPSQRPSFSELALQV 280
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 5e-11
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 228 NQ-LIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL 286
NQ L G +P++I L L+ +NLS N IP SLG++ L LDLS F +P+ L
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486
Query: 287 GKLVQLSELELSHNFLGREIPSQI 310
G+L L L L+ N L +P+ +
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 6e-11
Identities = 64/268 (23%), Positives = 104/268 (38%), Gaps = 52/268 (19%)
Query: 422 DFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
DF +G G +GSVY+ + L +F A+K+ + S + ++++ EI L + H
Sbjct: 1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQK--EREDAVNEIRILASVNH 58
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------- 521
NI+ + ++ EY G L+ +S +L
Sbjct: 59 PNIISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQA 118
Query: 522 ---------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
D+ S N+LL + D GI+K LK + + +GT Y+AP+
Sbjct: 119 LHEQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAK--TQIGTPHYMAPEVWKGR 176
Query: 568 -YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP-SPDVQG 625
Y K D++S L E+ P F + S + ++ P +PP S D+Q
Sbjct: 177 PYSYKSDIWSLGCLLYEMATFAPP--FEAR---SMQDLRYKVQRGKYPPIPPIYSQDLQ- 230
Query: 626 KLISIMEVAFSCLDVSPESRPTMQTITQ 653
I S L V P+ RP I
Sbjct: 231 NFIR------SMLQVKPKLRPNCDKILA 252
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 9e-11
Identities = 34/80 (42%), Positives = 46/80 (57%)
Query: 208 GKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLK 267
G IP + KL L + L GN + G++P +GS+T LE L+LS N F+ IPESLG L
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 268 LHYLDLSKYQFIQELPKELG 287
L L+L+ +P LG
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 9e-11
Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 51/252 (20%)
Query: 446 EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH--ARHSILIYEYL 503
E +AVK + IAD K+ EIE L + H NIVK+ G C+ LI E+L
Sbjct: 34 EQVAVKSLKPESGGNHIADLKK---EIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFL 90
Query: 504 KRGSLATNLSNDAAAEEL-------------------------DISSKNVLLDLEHKAHV 538
GSL L + L D++++NVL++ EH+ +
Sbjct: 91 PSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKI 150
Query: 539 SDFGIAKFLKPDSSNWSA---LVGTYRYVAPDYRKKC------DVYSFRVLALEVI---- 585
DFG+ K ++ D ++ L + AP+ + DV+SF V E++
Sbjct: 151 GDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCD 210
Query: 586 KGKHPRG-FVSSILPSPSVINM-RLDEMLD--PRLPPPSPDVQGKLISIMEVAFSCLDVS 641
P F+ I P+ + + RL +L+ RLP P P+ ++ +M C +
Sbjct: 211 SESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPRP-PNCPEEVYQLMR---KCWEFQ 266
Query: 642 PESRPTMQTITQ 653
P R T Q + +
Sbjct: 267 PSKRTTFQNLIE 278
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284 |
| >gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 1e-10
Identities = 62/261 (23%), Positives = 110/261 (42%), Gaps = 57/261 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IG G G+V + E ++ +AVK + + + F E +TK+ H+N+V+ G
Sbjct: 14 IGEGEFGAVLQGEYTGQK-VAVKNIKCDVTA------QAFLEETAVMTKLHHKNLVRLLG 66
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAA------------------EEL--------D 522
H I++ E + +G+L L A E L D
Sbjct: 67 VILHNGLYIVM-ELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRD 125
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYS 576
++++N+L+ + A VSDFG+A+ + + S L ++ AP+ + K DV+S
Sbjct: 126 LAARNILVSEDGVAKVSDFGLAR-VGSMGVDNSKL--PVKWTAPEALKHKKFSSKSDVWS 182
Query: 577 FRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLISIMEVA 634
+ VL EV F P P + + E ++ R+ PP + +M
Sbjct: 183 YGVLLWEV--------FSYGRAPYPKMSLKEVKECVEKGYRMEPPE-GCPADVYVLMT-- 231
Query: 635 FSCLDVSPESRPTMQTITQQL 655
SC + P+ RP+ + ++L
Sbjct: 232 -SCWETEPKKRPSFHKLREKL 251
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 38/111 (34%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 159 FGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLN 218
F W + L + + IP +I L L +LS N I G IP G +
Sbjct: 411 FDSTKGKW----FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT 466
Query: 219 SLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLH 269
SL L L N G +P +G LT L LNL+ N S +P +LG L LH
Sbjct: 467 SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL-LH 516
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
L +L+ ++L N + G IP ++ SL L L N F GS+P S+G L+SLR L L N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500
Query: 62 NLSGSIPPSVGNLML 76
+LSG +P ++G +L
Sbjct: 501 SLSGRVPAALGGRLL 515
|
Length = 623 |
| >gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 63/263 (23%), Positives = 106/263 (40%), Gaps = 53/263 (20%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G+G G V + P+ + +AVK L ++ A QK+ E++ L K IV FY
Sbjct: 9 LGAGNSGVVSKVLHRPTGKIMAVKTI--RLEINE-AIQKQILRELDILHKCNSPYIVGFY 65
Query: 488 GFCSHARHSILIYEYLKRGSLA--------------------------TNLSNDAAAEEL 521
G + + EY+ GSL T L
Sbjct: 66 GAFYNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHKIIHR 125
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DYRKKCDVY 575
D+ N+L++ + + DFG++ L + VGT Y+AP DY K D++
Sbjct: 126 DVKPSNILVNSRGQIKLCDFGVSGQLVNSLAK--TFVGTSSYMAPERIQGNDYSVKSDIW 183
Query: 576 SFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD---PRLP--PPSPDVQGKLISI 630
S + +E+ G+ P + P + + L +++ PRLP SPD Q +++
Sbjct: 184 SLGLSLIELATGRFP--YPPENDPPDGIFEL-LQYIVNEPPPRLPSGKFSPDFQ-DFVNL 239
Query: 631 MEVAFSCLDVSPESRPTMQTITQ 653
CL P RP+ + + +
Sbjct: 240 ------CLIKDPRERPSYKELLE 256
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265 |
| >gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 65/279 (23%), Positives = 118/279 (42%), Gaps = 59/279 (21%)
Query: 415 EIIRAINDFDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFFAEIE 473
E+ R D K+ +G G++G VY +AVK L D + +EF E
Sbjct: 2 EMERT--DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKT----LKEDTME-VEEFLKEAA 54
Query: 474 ALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------------ATNLS 513
+ +I+H N+V+ G C+ +I E++ G+L AT +S
Sbjct: 55 VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQIS 114
Query: 514 NDAAAEEL------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYV 564
+ E D++++N L+ H V+DFG+++ + D+ ++A G ++
Sbjct: 115 SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAKFPIKWT 172
Query: 565 APD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP--RL 616
AP+ + K DV++F VL E+ + P P + ++ E+L+ R+
Sbjct: 173 APESLAYNKFSIKSDVWAFGVLLWEIA--------TYGMSPYPGIDLSQVYELLEKGYRM 224
Query: 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P +G + E+ +C +P RP+ I Q
Sbjct: 225 ERP----EGCPPKVYELMRACWQWNPSDRPSFAEIHQAF 259
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263 |
| >gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3 | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 2e-10
Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 40/209 (19%)
Query: 417 IRAINDFDAKYC----IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
I ++ D KY IG G G+VY A ++ + + +A+K+ N Q ++ E
Sbjct: 11 IVSVGDPKKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNL----QQQPKKELIINE 66
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE----------- 520
I + + ++ NIV + ++ EYL GSL T++ + +E
Sbjct: 67 ILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL-TDVVTETCMDEGQIAAVCRECL 125
Query: 521 -------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD 567
DI S N+LL ++ ++DFG + P+ S S +VGT ++AP+
Sbjct: 126 QALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPE 185
Query: 568 ------YRKKCDVYSFRVLALEVIKGKHP 590
Y K D++S ++A+E+++G+ P
Sbjct: 186 VVTRKAYGPKVDIWSLGIMAIEMVEGEPP 214
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297 |
| >gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 3e-10
Identities = 63/259 (24%), Positives = 110/259 (42%), Gaps = 59/259 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ +AVK S + F E + + K+RH +V+ Y
Sbjct: 14 LGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPE-----SFLEEAQIMKKLRHDKLVQLYA 68
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN------------DAAAE--------------ELD 522
S ++ EY+ +GSL L + D AA+ D
Sbjct: 69 VVSE-EPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRD 127
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ S N+L+ ++DFG+A+ + + + ++A G ++ AP+ + K D
Sbjct: 128 LRSANILVGDGLVCKIADFGLARLI--EDNEYTARQGAKFPIKWTAPEAALYGRFTIKSD 185
Query: 574 VYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLISI 630
V+SF +L E++ KG+ +P P + N + E ++ R+P P Q IS+
Sbjct: 186 VWSFGILLTELVTKGR---------VPYPGMNNREVLEQVERGYRMPCP----QDCPISL 232
Query: 631 MEVAFSCLDVSPESRPTMQ 649
E+ C PE RPT +
Sbjct: 233 HELMLQCWKKDPEERPTFE 251
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260 |
| >gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1 | Back alignment and domain information |
|---|
Score = 61.3 bits (148), Expect = 4e-10
Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 40/209 (19%)
Query: 417 IRAINDFDAKYC----IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
I ++ D KY IG G G+VY A ++ + + +A+++ N Q ++ E
Sbjct: 12 IVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNL----QQQPKKELIINE 67
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE----------- 520
I + + ++ NIV + ++ EYL GSL T++ + +E
Sbjct: 68 ILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL-TDVVTETCMDEGQIAAVCRECL 126
Query: 521 -------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD 567
DI S N+LL ++ ++DFG + P+ S S +VGT ++AP+
Sbjct: 127 QALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPE 186
Query: 568 ------YRKKCDVYSFRVLALEVIKGKHP 590
Y K D++S ++A+E+I+G+ P
Sbjct: 187 VVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296 |
| >gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 6e-10
Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 54/207 (26%)
Query: 429 IGSGRHGSVYRA--ELPSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG+G G V+R ++P ++ +A+K Q +++F +E + + H NI+
Sbjct: 13 IGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQ---RQDFLSEASIMGQFSHHNII 69
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLSND----------------AAAEEL------- 521
+ G + + +++I EY++ G+L L + AA +
Sbjct: 70 RLEGVVTKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYV 129
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY---------RYVAPD--- 567
D++++N+L++ + VSDFG+++ L+ D GTY R+ AP+
Sbjct: 130 HRDLAARNILVNSNLECKVSDFGLSRVLEDDPE------GTYTTSGGKIPIRWTAPEAIA 183
Query: 568 YRK---KCDVYSFRVLALEVIK-GKHP 590
YRK DV+SF ++ EV+ G+ P
Sbjct: 184 YRKFTSASDVWSFGIVMWEVMSFGERP 210
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268 |
| >gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 9e-10
Identities = 65/266 (24%), Positives = 111/266 (41%), Gaps = 53/266 (19%)
Query: 429 IGSGRHGSVY--RAELPSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG+G G V R +LP K +A+K + Q +++F +E + + H NI+
Sbjct: 12 IGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQ---RRDFLSEASIMGQFDHPNII 68
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLS-------------------------NDAAAE 519
G + ++ +++ EY++ GSL L +D
Sbjct: 69 HLEGVVTKSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYV 128
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG---TYRYVAPD---YRK--- 570
D++++N+L++ VSDFG+++ L+ D G R+ AP+ YRK
Sbjct: 129 HRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTS 188
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629
DV+S+ ++ EV+ G+ P +S + VI ++E RLP P D L
Sbjct: 189 ASDVWSYGIVMWEVMSYGERPYWEMS----NQDVIKA-IEEGY--RLPAPM-DCPAALHQ 240
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+M C RP + I L
Sbjct: 241 LM---LDCWQKDRNERPKFEQIVSIL 263
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267 |
| >gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 1e-09
Identities = 64/270 (23%), Positives = 110/270 (40%), Gaps = 59/270 (21%)
Query: 422 DFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
+ IG G G V + + +AVK + A + F AE +T++RH
Sbjct: 7 ELKLLQTIGKGEFGDVMLGDYRGNK-VAVKCIKND------ATAQAFLAEASVMTQLRHS 59
Query: 482 NIVKFYGFCSHARHSILIY-EYLKRGSLA--------TNLSNDA----------AAEEL- 521
N+V+ G + + I EY+ +GSL + L D A E L
Sbjct: 60 NLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE 119
Query: 522 -------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------Y 568
D++++NVL+ ++ A VSDFG+ K SS ++ AP+ +
Sbjct: 120 ANNFVHRDLAARNVLVSEDNVAKVSDFGLT---KEASSTQDTGKLPVKWTAPEALREKKF 176
Query: 569 RKKCDVYSFRVLALEVI---KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625
K DV+SF +L E+ + +PR + ++P R+++ P P V
Sbjct: 177 STKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVP-------RVEKGYKMDAPDGCPPV-- 227
Query: 626 KLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ +V C + +RP+ + +QL
Sbjct: 228 ----VYDVMKQCWHLDAATRPSFLQLREQL 253
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256 |
| >gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 61/234 (26%), Positives = 99/234 (42%), Gaps = 60/234 (25%)
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSI--LIYEYLKRGSLATNLSNDAA--------AEE 520
EI L + H NIVK+ G CS LI EY+ GSL L A++
Sbjct: 56 EINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKHKLNLAQLLLFAQQ 115
Query: 521 L---------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR--- 562
+ D++++NVLLD + + DFG+AK + P+ + YR
Sbjct: 116 ICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAV-PEGHEY------YRVRE 168
Query: 563 -------YVAPDYRKKC------DVYSFRVLALEVI-----KGKHPRGFVSSILPSPSVI 604
+ A + K+ DV+SF V E++ K P+ F I P +
Sbjct: 169 DGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQM 228
Query: 605 N-MRLDEMLD--PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+RL E+L+ RLP P + ++ +M+ +C + + RPT +++ L
Sbjct: 229 TVVRLIELLERGMRLPCPK-NCPQEVYILMK---NCWETEAKFRPTFRSLIPIL 278
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283 |
| >gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3 | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 1e-09
Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 48/258 (18%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V++ + +++ +A+K + D+I D ++ EI L++ + K+Y
Sbjct: 12 IGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQ---EITVLSQCDSPYVTKYY 68
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------DI 523
G +I EYL GS A +L +E DI
Sbjct: 69 GSYLKDTKLWIIMEYLGGGS-ALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDI 127
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSF 577
+ NVLL + ++DFG+A L + VGT ++AP+ Y K D++S
Sbjct: 128 KAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSL 187
Query: 578 RVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS-IMEVAFS 636
+ A+E+ KG+ P S + P + L P+ PP+ ++G + E +
Sbjct: 188 GITAIELAKGEPPH---SELHPMKVL-------FLIPKNNPPT--LEGNYSKPLKEFVEA 235
Query: 637 CLDVSPESRPTMQTITQQ 654
CL+ P RPT + + +
Sbjct: 236 CLNKEPSFRPTAKELLKH 253
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277 |
| >gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 66/268 (24%), Positives = 98/268 (36%), Gaps = 62/268 (23%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G G GSV + L + + K + P+ + QK+ E+E + IVK+YG
Sbjct: 9 LGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDL--QKQILRELEINKSCKSPYIVKYYG 66
Query: 489 -FCSHARHSILI-YEYLKRGSLATNLSNDAAAEEL------------------------- 521
F + SI I EY + GSL D+ +++
Sbjct: 67 AFLDESSSSIGIAMEYCEGGSL------DSIYKKVKKRGGRIGEKVLGKIAESVLKGLSY 120
Query: 522 ---------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI N+LL + + + DFG++ L +S GT Y+AP+
Sbjct: 121 LHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELV--NSLAGTFTGTSFYMAPERIQGK 178
Query: 568 -YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
Y DV+S + LEV + + P F P I L + P D G
Sbjct: 179 PYSITSDVWSLGLTLLEVAQNRFP--FPPEGEPPLGPIE--LLSYIVNMPNPELKDEPGN 234
Query: 627 LISIMEVAFS-----CLDVSPESRPTMQ 649
I E F CL+ P RPT
Sbjct: 235 GIKWSE-EFKDFIKQCLEKDPTRRPTPW 261
|
Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287 |
| >gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 72/289 (24%), Positives = 104/289 (35%), Gaps = 79/289 (27%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIAD-QKEFFAEIEALTKI 478
F+ IG G +G VY+A + + +A+K + I D ++E E L K
Sbjct: 6 GIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDI------IEDEEEEIKEEYNILRKY 59
Query: 479 -RHRNIVKFYGFCSHARHSI------LIYEYLKRGSLATNL------SNDAAAEEL---- 521
H NI FYG L+ E GS T+L EE
Sbjct: 60 SNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGS-VTDLVKGLRKKGKRLKEEWIAYI 118
Query: 522 -------------------DISSKNVLLDLEHKAHVS--DFGIAKFLKPDSSNWSALVGT 560
DI +N+LL A V DFG++ L + +GT
Sbjct: 119 LRETLRGLAYLHENKVIHRDIKGQNILLT--KNAEVKLVDFGVSAQLDSTLGRRNTFIGT 176
Query: 561 YRYVAP-----------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLD 609
++AP Y + DV+S + A+E+ GK P + + P MR
Sbjct: 177 PYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPP---LCDMHP------MRA- 226
Query: 610 EMLDPRLPPP---SPDVQGKLISIMEVAF--SCLDVSPESRPTMQTITQ 653
PR PPP SP + S F CL + E RP M+ + +
Sbjct: 227 LFKIPRNPPPTLKSP----ENWSKKFNDFISECLIKNYEQRPFMEELLE 271
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275 |
| >gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 59/278 (21%), Positives = 100/278 (35%), Gaps = 72/278 (25%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G G G VY+A+ A K +++ D F EI+ L++ +H NIV Y
Sbjct: 13 LGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELED---FMVEIDILSECKHPNIVGLYE 69
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------------------------- 521
+ ++ E+ G+L D+ EL
Sbjct: 70 AYFYENKLWILIEFCDGGAL------DSIMLELERGLTEPQIRYVCRQMLEALNFLHSHK 123
Query: 522 ----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD---------- 567
D+ + N+LL L+ ++DFG++ K +GT ++AP+
Sbjct: 124 VIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDN 183
Query: 568 -YRKKCDVYSFRVLALEVIKGK------HPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620
Y K D++S + +E+ + + +P + IL S P L PS
Sbjct: 184 PYDYKADIWSLGITLIELAQMEPPHHELNPMRVLLKILKSEP-----------PTLDQPS 232
Query: 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658
S + SCL P+ RPT + + S
Sbjct: 233 ----KWSSSFNDFLKSCLVKDPDDRPTAAELLKHPFVS 266
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280 |
| >gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 4e-09
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 37/199 (18%)
Query: 428 CIGSGRHGSVYRA-ELPSKEFLAVKKFN-SPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
+G G G VY ++ + LAVK+ P + + EI+ L ++H IV+
Sbjct: 9 LLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQ 68
Query: 486 FYGFCSHARHSILIY-EYLKRGSLATNLSNDAAAEEL----------------------- 521
+YG C ++ I+ EY+ GS+ L A E
Sbjct: 69 YYG-CLRDDETLSIFMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSNMIVH 127
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKP---DSSNWSALVGTYRYVAPD------YRKK 571
DI N+L D + DFG +K L+ + ++ GT +++P+ Y +K
Sbjct: 128 RDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRK 187
Query: 572 CDVYSFRVLALEVIKGKHP 590
DV+S +E++ K P
Sbjct: 188 ADVWSVGCTVVEMLTEKPP 206
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263 |
| >gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 5e-09
Identities = 57/203 (28%), Positives = 84/203 (41%), Gaps = 46/203 (22%)
Query: 475 LTKIRHRNIVK-FYGFCSHARHSILIYEYLKRGSLATNLSNDA----------AAEEL-- 521
L++I H IVK Y F + L+ EY G L ++LS + AAE +
Sbjct: 47 LSRINHPFIVKLHYAFQTE-EKLYLVLEYAPGGELFSHLSKEGRFSEERARFYAAEIVLA 105
Query: 522 ------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-- 567
D+ +N+LLD + ++DFG+AK L + S + GT Y+AP+
Sbjct: 106 LEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVL 165
Query: 568 ----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP-SPD 622
Y K D +S VL E++ GK P F + + L + R P SP+
Sbjct: 166 LGKGYGKAVDWWSLGVLLYEMLTGKPP--FYAE--DRKEIYEKILKD--PLRFPEFLSPE 219
Query: 623 VQGKLISIMEVAFSCLDVSPESR 645
+ LIS L P R
Sbjct: 220 AR-DLIS------GLLQKDPTKR 235
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 6e-09
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 LHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSI 67
L L + L G IP + L+ L + L GN RG++P S+G+++SL L L N+ +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 68 PPSVGNL-MLTVLALENNHFTGNL 90
P S+G L L +L L N +G +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506
|
Length = 623 |
| >gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 6e-09
Identities = 62/273 (22%), Positives = 103/273 (37%), Gaps = 64/273 (23%)
Query: 429 IGSGRHGSVYRAEL--PSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G G G V R E + + AVK S SD + D F E + + H N++
Sbjct: 3 LGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDD---FLKEAAIMHSLDHENLI 59
Query: 485 KFYGFCSHARHSI-LIYEYLKRGSLATNLSNDAAAEEL---------------------- 521
+ YG H + ++ E GSL L DA L
Sbjct: 60 RLYGVV--LTHPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKR 117
Query: 522 ----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA---LVGTYRYVAPD------Y 568
D++++N+LL + K + DFG+ + L + ++ L + + AP+ +
Sbjct: 118 FIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRTF 177
Query: 569 RKKCDVYSFRVLALEVIK-GKHP----RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623
DV+ F V E+ G+ P G S IL ++D+ + RL P
Sbjct: 178 SHASDVWMFGVTLWEMFTYGEEPWAGLSG--SQIL-------KKIDKEGE-RLERP-EAC 226
Query: 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656
+ ++M C +P RPT + + L
Sbjct: 227 PQDIYNVM---LQCWAHNPADRPTFAALREFLP 256
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257 |
| >gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 52/204 (25%), Positives = 85/204 (41%), Gaps = 41/204 (20%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKE---FFAEIEALT 476
+DF+ +G+G G V S ++ A+K L +I K+ E L
Sbjct: 1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKI----LSKAKIVKLKQVEHVLNEKRILQ 56
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNL------SNDA----AAEEL----- 521
IRH +V YG + L+ EY+ G L ++L AA+ +
Sbjct: 57 SIRHPFLVNLYGSFQDDSNLYLVMEYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEY 116
Query: 522 ---------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------ 566
D+ +N+LLD + ++DFG AK +K + ++ L GT Y+AP
Sbjct: 117 LHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRT--YT-LCGTPEYLAPEIILSK 173
Query: 567 DYRKKCDVYSFRVLALEVIKGKHP 590
Y K D ++ +L E++ G P
Sbjct: 174 GYGKAVDWWALGILIYEMLAGYPP 197
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290 |
| >gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 1e-08
Identities = 63/264 (23%), Positives = 107/264 (40%), Gaps = 69/264 (26%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G G G V+ +A+K S + F E + + K+RH +V+ Y
Sbjct: 14 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPE-----AFLQEAQVMKKLRHEKLVQLYA 68
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN------------DAAAE--------------ELD 522
S I + EY+ +GSL L D AA+ D
Sbjct: 69 VVSEEPIYI-VTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD 127
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + N+L+ V+DFG+A+ + + + ++A G ++ AP+ + K D
Sbjct: 128 LRAANILVGENLVCKVADFGLARLI--EDNEYTARQGAKFPIKWTAPEAALYGRFTIKSD 185
Query: 574 VYSFRVLALEV-IKGKHPRGFVSSILPSPSVINMRLDEMLDP-----RLPPPS--PDVQG 625
V+SF +L E+ KG+ +P P ++N E+LD R+P P P+
Sbjct: 186 VWSFGILLTELTTKGR---------VPYPGMVNR---EVLDQVERGYRMPCPPECPE--- 230
Query: 626 KLISIMEVAFSCLDVSPESRPTMQ 649
S+ ++ C PE RPT +
Sbjct: 231 ---SLHDLMCQCWRKEPEERPTFE 251
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262 |
| >gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1 | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 61/226 (26%)
Query: 421 NDFDAKYCIGSGRHGSVYRAEL--PSKEFLAVKKFNSPLPSDQIADQKEFFAEIE--ALT 476
+DF IG G +V A+ +KE+ A+K + I ++K + +IE LT
Sbjct: 1 DDFKFGKIIGEGSFSTVVLAKEKETNKEY-AIKILDKRQ---LIKEKKVKYVKIEKEVLT 56
Query: 477 KI-RHRNIVKFYGFCSHARHSI-LIYEYL----------KRGSLATNLSNDAAAEEL--- 521
++ H I+K Y + ++ + EY K GSL + AAE L
Sbjct: 57 RLNGHPGIIKLY-YTFQDEENLYFVLEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLAL 115
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA-------------- 556
D+ +N+LLD + ++DFG AK L P+SS S
Sbjct: 116 EYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKN 175
Query: 557 ------LVGTYRYVAP------DYRKKCDVYSFRVLALEVIKGKHP 590
VGT YV+P K D+++ + +++ GK P
Sbjct: 176 RRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPP 221
|
Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280 |
| >gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 2e-08
Identities = 61/261 (23%), Positives = 109/261 (41%), Gaps = 59/261 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G G G V+ +A+K P + + F E + + K+RH +V Y
Sbjct: 14 LGQGCFGEVWMGTWNGTTKVAIKTLK---PGTMMPEA--FLQEAQIMKKLRHDKLVPLYA 68
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN------------DAAAE--------------ELD 522
S I + E++ +GSL L D AA+ D
Sbjct: 69 VVSEEPIYI-VTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRD 127
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + N+L+ ++DFG+A+ + + + ++A G ++ AP+ + K D
Sbjct: 128 LRAANILVGDNLVCKIADFGLARLI--EDNEYTARQGAKFPIKWTAPEAALYGRFTIKSD 185
Query: 574 VYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLISI 630
V+SF +L E++ KG+ +P P ++N + E ++ R+P P QG S+
Sbjct: 186 VWSFGILLTELVTKGR---------VPYPGMVNREVLEQVERGYRMPCP----QGCPESL 232
Query: 631 MEVAFSCLDVSPESRPTMQTI 651
E+ C P+ RPT + I
Sbjct: 233 HELMKLCWKKDPDERPTFEYI 253
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260 |
| >gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 62/271 (22%), Positives = 103/271 (38%), Gaps = 64/271 (23%)
Query: 429 IGSGRHGSVYRAE-LPSKEF----LAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+GSG G+VY+ +P E +A+K + A KE E + + H ++
Sbjct: 15 LGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREE--TSPKA-NKEILDEAYVMASVDHPHV 71
Query: 484 VKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAA--------------------EEL-- 521
V+ G C ++ LI + + G L + N EE
Sbjct: 72 VRLLGICLSSQVQ-LITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRL 130
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD------YRK 570
D++++NVL+ ++DFG+AK L D + A G +++A + Y
Sbjct: 131 VHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTH 190
Query: 571 KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLD-----PRLPPPSPDVQ 624
K DV+S+ V E++ G P + E+ D RLP P
Sbjct: 191 KSDVWSYGVTVWELMTFGAKPYE------------GIPAVEIPDLLEKGERLPQP----P 234
Query: 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
I + V C + ESRPT + + +
Sbjct: 235 ICTIDVYMVLVKCWMIDAESRPTFKELINEF 265
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279 |
| >gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 53/196 (27%), Positives = 76/196 (38%), Gaps = 39/196 (19%)
Query: 429 IGSGRHGSVYRAELPSKEFL-AVKKFNSPLPSDQIAD---QKEFFAEIEALTKIRHRNIV 484
+G G G V ++ SK A+K I + Q+ F+E E L + H IV
Sbjct: 1 LGVGGFGRVELVKVKSKNRTFALKCVKK----RHIVETGQQEHIFSEKEILEECNHPFIV 56
Query: 485 KFYGFCSHARHSILIYEYLKRGSLAT------NLSNDAAA----------EEL------- 521
K Y ++ ++ EY G L T A E L
Sbjct: 57 KLYRTFKDKKYIYMLMEYCLGGELWTILRDRGLFDEYTARFYIACVVLAFEYLHNRGIIY 116
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDV 574
D+ +N+LLD + DFG AK LK W+ GT YVAP+ Y D
Sbjct: 117 RDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWT-FCGTPEYVAPEIILNKGYDFSVDY 175
Query: 575 YSFRVLALEVIKGKHP 590
+S +L E++ G+ P
Sbjct: 176 WSLGILLYELLTGRPP 191
|
Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262 |
| >gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6 | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 6e-08
Identities = 70/282 (24%), Positives = 114/282 (40%), Gaps = 70/282 (24%)
Query: 423 FDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RH 480
F+ +G+G +G VY+ + + + A+K + + D+ ++E EI L K H
Sbjct: 18 FELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMD--VTEDE---EEEIKLEINMLKKYSHH 72
Query: 481 RNIVKFYGF------CSHARHSILIYEYLKRGS---LATNLSNDAAAEEL---------- 521
RNI +YG H L+ E+ GS L N +A E+
Sbjct: 73 RNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILR 132
Query: 522 -------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD- 567
DI +NVLL + + DFG++ L + +GT ++AP+
Sbjct: 133 GLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEV 192
Query: 568 ----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617
Y + D++S + A+E+ +G P + + P ++ L PR P
Sbjct: 193 IACDENPDATYDYRSDIWSLGITAIEMAEGAPP---LCDMHPMRAL-------FLIPRNP 242
Query: 618 PP---SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656
PP S K I +E CL + SRP+ T+QLL
Sbjct: 243 PPKLKSKKWSKKFIDFIE---GCLVKNYLSRPS----TEQLL 277
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 7e-08
Identities = 58/183 (31%), Positives = 81/183 (44%), Gaps = 6/183 (3%)
Query: 128 SLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEI-ASNWGKCPKLSTLNVSMNNITRSI 186
L N T+ L LD+ + + S N RS
Sbjct: 49 RLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSN 108
Query: 187 PLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNS-LTKLILRGNQLIGHLPSEIGSLTKLE 245
E+ L+ L DL N+I IP G L S L +L L N+ I LPS + +L L+
Sbjct: 109 ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLK 166
Query: 246 FLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGRE 305
L+LS N S +P+ L NL L+ LDLS + I +LP E+ L L EL+LS+N +
Sbjct: 167 NLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIEL 224
Query: 306 IPS 308
+ S
Sbjct: 225 LSS 227
|
Length = 394 |
| >gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 7e-08
Identities = 62/287 (21%), Positives = 113/287 (39%), Gaps = 79/287 (27%)
Query: 429 IGSGRHGSVYRAEL--PSKEFLA-------VKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+G G G VY+ EL P++ A +K+ P Q+EF E E ++ ++
Sbjct: 13 LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEP------KVQQEFRQEAELMSDLQ 66
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNL-----SNDAAAEEL------------- 521
H NIV G C+ + + +++EYL G L L +D AE
Sbjct: 67 HPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDF 126
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++N L+ +SDFG+++ + S+++ +
Sbjct: 127 LHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIY--SADYYRVQS 184
Query: 560 T----YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLD 609
R++ P+ + + D++SF V+ E+ F + P N +
Sbjct: 185 KSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEI--------FSYGLQPYYGFSNQEVI 236
Query: 610 EMLDPRLPPPSP-DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
EM+ R P P D ++ ++M C + P RP + I +L
Sbjct: 237 EMIRSRQLLPCPEDCPARVYALMI---ECWNEIPARRPRFKDIHTRL 280
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283 |
| >gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6 | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 1e-07
Identities = 63/257 (24%), Positives = 106/257 (41%), Gaps = 45/257 (17%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V A E S +AVK + L Q ++ F E+ + +H+N+V+ Y
Sbjct: 29 IGEGSTGIVCIAREKHSGRQVAVKMMD--LRKQQ--RRELLFNEVVIMRDYQHQNVVEMY 84
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-----------------------DIS 524
++ E+L+ G+L +S EE DI
Sbjct: 85 KSYLVGEELWVLMEFLQGGALTDIVSQTRLNEEQIATVCESVLQALCYLHSQGVIHRDIK 144
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFR 578
S ++LL L+ + +SDFG + D +LVGT ++AP+ Y + D++S
Sbjct: 145 SDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLG 204
Query: 579 VLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIM-EVAFSC 637
++ +E++ G+ P + S SP RL + PPP K+ ++ +
Sbjct: 205 IMVIEMVDGEPP--YFSD---SPVQAMKRLRDS-----PPPKLKNAHKISPVLRDFLERM 254
Query: 638 LDVSPESRPTMQTITQQ 654
L P+ R T Q +
Sbjct: 255 LTREPQERATAQELLDH 271
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297 |
| >gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 1e-07
Identities = 59/265 (22%), Positives = 105/265 (39%), Gaps = 58/265 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ + +AVK S Q F E + ++H +V+ Y
Sbjct: 14 LGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQ-----AFLEEANLMKTLQHDKLVRLYA 68
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------------------------D 522
+ +I EY+ +GSL L +D + L D
Sbjct: 69 VVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRD 128
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKCD 573
+ + NVL+ ++DFG+A+ ++ + ++A G ++ AP+ + K D
Sbjct: 129 LRAANVLVSESLMCKIADFGLARVIEDNE--YTAREGAKFPIKWTAPEAINFGSFTIKSD 186
Query: 574 VYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLISI 630
V+SF +L E++ GK +P P + N + L R+P + +L I
Sbjct: 187 VWSFGILLYEIVTYGK---------IPYPGMSNSDVMSALQRGYRMPRME-NCPDELYDI 236
Query: 631 MEVAFSCLDVSPESRPTMQTITQQL 655
M+ +C E RPT + L
Sbjct: 237 MK---TCWKEKAEERPTFDYLQSVL 258
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261 |
| >gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4 | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 53/228 (23%), Positives = 96/228 (42%), Gaps = 43/228 (18%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEF---FAEIEALTKIRHRNIVK 485
+G G +G+VY + +AVK+ S+ +A +KE+ E++ L ++H NIV+
Sbjct: 8 LGKGAYGTVYCGLTNQGQLIAVKQVELD-TSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQ 66
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------ 521
+ G C + E++ GS+++ L+ E
Sbjct: 67 YLGTCLDDNTISIFMEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNCVVHR 126
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS------ALVGTYRYVAPD------YR 569
DI NV+L + DFG A+ L + + ++ GT ++AP+ Y
Sbjct: 127 DIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYG 186
Query: 570 KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617
+K D++S E+ GK P ++S+ ++ + L PRLP
Sbjct: 187 RKSDIWSIGCTVFEMATGKPP---LASMDRLAAMFYIGAHRGLMPRLP 231
|
Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265 |
| >gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 2e-07
Identities = 61/266 (22%), Positives = 105/266 (39%), Gaps = 47/266 (17%)
Query: 423 FDAKYCIGSGRHGSVYRAELPSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
++ IG G G +Y A+ S E +K+ + L + +++ E+ L K++H
Sbjct: 2 YEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEID--LTKMPVKEKEASKKEVILLAKMKHP 59
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSLATNLS--------------------------ND 515
NIV F+ ++ EY G L ++ +D
Sbjct: 60 NIVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHD 119
Query: 516 AAAEELDISSKNVLLDLEHK-AHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------Y 568
DI S+N+ L A + DFGIA+ L VGT Y++P+ Y
Sbjct: 120 RKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNRPY 179
Query: 569 RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
K D++S + E+ KHP ++ + L ++ P SP+ L
Sbjct: 180 NNKTDIWSLGCVLYELCTLKHP-------FEGNNLHQLVL-KICQGYFAPISPNFSRDLR 231
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQ 654
S++ F VSP RP++ +I ++
Sbjct: 232 SLISQLFK---VSPRDRPSITSILKR 254
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257 |
| >gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 65/295 (22%), Positives = 111/295 (37%), Gaps = 87/295 (29%)
Query: 429 IGSGRHGSVYRAE------LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
+G G G V +A +AVK S ++ D +E L ++ H +
Sbjct: 8 LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRD---LLSEFNLLKQVNHPH 64
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSLATNL--------------------SNDAAAEEL- 521
++K YG CS +LI EY K GSL + L D E
Sbjct: 65 VIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERAL 124
Query: 522 ---------------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-- 552
D++++NVL+ K +SDFG+++ + + S
Sbjct: 125 TMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYV 184
Query: 553 ---------NWSALVGTYRYVAPDYRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPS 602
W A+ + ++ Y + DV+SF VL E++ G + P P
Sbjct: 185 KRSKGRIPVKWMAIESLFDHI---YTTQSDVWSFGVLLWEIVTLGGN---------PYPG 232
Query: 603 VINMRLDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ RL +L R+ P + ++ ++M +C P+ RPT I+++L
Sbjct: 233 IAPERLFNLLKTGYRMERPE-NCSEEMYNLM---LTCWKQEPDKRPTFADISKEL 283
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290 |
| >gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 62/258 (24%), Positives = 107/258 (41%), Gaps = 57/258 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEF-FAEIEALTKIRHRNIVKF 486
IG G G V A + + +AVKK + L Q ++E F E+ + +H NIV+
Sbjct: 27 IGEGSTGIVCIATDKSTGRQVAVKKMD--LRKQQ---RRELLFNEVVIMRDYQHPNIVEM 81
Query: 487 YGFCSHARHSIL--IYEYLKRGSL-----ATNLSNDAAAE------------------EL 521
Y S+ L + E+L+ G+L T ++ + A
Sbjct: 82 YS--SYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLAVLKALSFLHAQGVIHR 139
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
DI S ++LL + + +SDFG + + +LVGT ++AP+ Y + D++
Sbjct: 140 DIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLPYGTEVDIW 199
Query: 576 SFRVLALEVIKGKHPRGFVSSILPSPSVINM-RLDEMLDPRLPPP---SPDVQGKLISIM 631
S ++ +E++ G+ P P + M R+ + L P+L SP ++ + M
Sbjct: 200 SLGIMVIEMVDGEPP------YFNEPPLQAMKRIRDNLPPKLKNLHKVSPRLRS-FLDRM 252
Query: 632 EVAFSCLDVSPESRPTMQ 649
V P R T
Sbjct: 253 LVR------DPAQRATAA 264
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285 |
| >gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 39/202 (19%)
Query: 422 DFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKE--FFAEIEALTKI 478
D + +G+G G V+ + S+ + A+K P + I ++E E L ++
Sbjct: 2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIP---EVIRLKQEQHVHNEKRVLKEV 58
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND----------------AAAEEL- 521
H I++ + R ++ EY+ G L + L N A E L
Sbjct: 59 SHPFIIRLFWTEHDQRFLYMLMEYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLH 118
Query: 522 -------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------Y 568
D+ +N+LLD E ++DFG AK L+ W+ L GT Y+AP+ +
Sbjct: 119 SKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLR--DRTWT-LCGTPEYLAPEVIQSKGH 175
Query: 569 RKKCDVYSFRVLALEVIKGKHP 590
K D ++ +L E++ G P
Sbjct: 176 NKAVDWWALGILIYEMLVGYPP 197
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291 |
| >gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 61/269 (22%), Positives = 106/269 (39%), Gaps = 55/269 (20%)
Query: 429 IGSGRHGSVYRAEL--PSKEFLAVKKFNSPLPSDQIADQKE-FFAEIEALTKI-RHRNIV 484
+G+G G V A SK +K L + ++E +E++ ++ + H NIV
Sbjct: 43 LGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIV 102
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLSNDAAA----EEL------------------- 521
G C+ ++I EY G L L + E+L
Sbjct: 103 NLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNC 162
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY---RYVAPD------YR 569
D++++NVLL + DFG+A+ + D SN+ +++AP+ Y
Sbjct: 163 IHRDLAARNVLLTHGKIVKICDFGLARDIMND-SNYVVKGNARLPVKWMAPESIFNCVYT 221
Query: 570 KKCDVYSFRVLALEVIK---GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
+ DV+S+ +L E+ +P V S R+ + P +P +
Sbjct: 222 FESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKLIKEGYRMAQ------PEHAPA---E 272
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ IM+ +C D P RPT + I Q +
Sbjct: 273 IYDIMK---TCWDADPLKRPTFKQIVQLI 298
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302 |
| >gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 44/185 (23%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G VY+A + + E +A+KK L + K EI+ L ++ H NI+K
Sbjct: 7 IGEGTYGVVYKARDKLTGEIVAIKKIK--LRFESEGIPKTALREIKLLKELNHPNIIKLL 64
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSN--DAAAEEL------------------------ 521
H L++E++ T+L L
Sbjct: 65 DVFRHKGDLYLVFEFMD-----TDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGI 119
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKK 571
D+ +N+L++ E ++DFG+A+ ++ V T Y AP+ Y
Sbjct: 120 LHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTP 179
Query: 572 CDVYS 576
D++S
Sbjct: 180 VDIWS 184
|
Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283 |
| >gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4 | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-07
Identities = 60/261 (22%), Positives = 113/261 (43%), Gaps = 49/261 (18%)
Query: 429 IGSGRHGSV--YRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKF 486
+G G +G V R K+++ +KK N L + ++K E + L++++H NIV +
Sbjct: 8 VGKGSYGEVSLVRHRTDGKQYV-IKKLN--LRNASRRERKAAEQEAQLLSQLKHPNIVAY 64
Query: 487 --------------YGFCS---------HARHSIL----IYEYLKRGSLATNLSNDAAAE 519
GFC + +L + E+ + ++A ++
Sbjct: 65 RESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHIL 124
Query: 520 ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCD 573
D+ ++NV L + V D GIA+ L+ S L+GT Y++P+ Y K D
Sbjct: 125 HRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSNKPYNYKSD 184
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEV 633
V++ E+ KH F + +N + +++ +LPP D +L ++
Sbjct: 185 VWALGCCVYEMATLKH--AF------NAKDMNSLVYRIIEGKLPPMPKDYSPELGELIA- 235
Query: 634 AFSCLDVSPESRPTMQTITQQ 654
+ L PE RP++++I +Q
Sbjct: 236 --TMLSKRPEKRPSVKSILRQ 254
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257 |
| >gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9 | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 4e-07
Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 47/220 (21%)
Query: 471 EIEALTKIRHRNIVKFYG-FCSHARHSILI-YEYLKRGSLATNLSNDAA---AEEL---- 521
EI L+ ++H NI+ +Y F +++LI EY G+L + EE+
Sbjct: 49 EIVILSLLQHPNIIAYYNHFMDD--NTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWY 106
Query: 522 -------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR 562
DI + N+ L + DFGI+K L + S +VGT
Sbjct: 107 LFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPY 166
Query: 563 YVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRL 616
Y++P+ Y K D+++ + E++ K R F ++ N+ + +
Sbjct: 167 YMSPELCQGVKYNFKSDIWALGCVLYELLTLK--RTFDATNPL-----NLVVKIVQGNYT 219
Query: 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656
P S LIS++ S L PE RPT + Q L
Sbjct: 220 PVVSVYSSE-LISLVH---SLLQQDPEKRPTADEVLDQPL 255
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256 |
| >gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 4e-07
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 429 IGSGRHGSVYRAEL----PSKE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
+G G G V+ AE P ++ +AVK SD +K+F E E LT ++H +
Sbjct: 13 LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA--SDNA--RKDFHREAELLTNLQHEH 68
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSL 508
IVKFYG C I+++EY+K G L
Sbjct: 69 IVKFYGVCVEGDPLIMVFEYMKHGDL 94
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288 |
| >gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 6e-07
Identities = 61/264 (23%), Positives = 103/264 (39%), Gaps = 54/264 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G G +G VY A +L ++ +A+K+ +P + EI + ++HRNIV++
Sbjct: 16 LGKGTYGIVYAARDLSTQVRIAIKE----IPERDSRYVQPLHEEIALHSYLKHRNIVQYL 71
Query: 488 GFCSHARHSILIYEYLKRGSLATNL--------SNDAAA--------EEL---------- 521
G S + E + GSL+ L N+ E L
Sbjct: 72 GSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVH 131
Query: 522 -DISSKNVLLDLEHKA-HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD--------YRKK 571
DI NVL++ +SDFG +K L + GT +Y+AP+ Y
Sbjct: 132 RDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAP 191
Query: 572 CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIM 631
D++S +E+ GK P F+ L P ++ ++ P P+ +S
Sbjct: 192 ADIWSLGCTIVEMATGKPP--FIE--LGEPQAAMFKVGMF---KIHPEIPES----LSAE 240
Query: 632 EVAF--SCLDVSPESRPTMQTITQ 653
F C + P+ R + + Q
Sbjct: 241 AKNFILRCFEPDPDKRASAHDLLQ 264
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268 |
| >gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1 | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DYRKKCDVY 575
DI N+LLD + H++DF IA + PD+ S GT Y+AP Y D +
Sbjct: 125 DIKPDNILLDEQGHVHITDFNIATKVTPDTLTTS-TSGTPGYMAPEVLCRQGYSVAVDWW 183
Query: 576 SFRVLALEVIKGKHP 590
S V A E ++GK P
Sbjct: 184 SLGVTAYECLRGKRP 198
|
Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258 |
| >gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 64/269 (23%), Positives = 106/269 (39%), Gaps = 52/269 (19%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G+G GSV + + +P+ +A K + + +K+ E++ + + R IV FY
Sbjct: 13 LGAGNGGSVSKVKHIPTGTVMAKK---VVHIGAKSSVRKQILRELQIMHECRSPYIVSFY 69
Query: 488 GFCSHARHSILIYEYLKRGSL-------------------------ATNLSNDAAAEELD 522
G + + + E++ GSL T L N D
Sbjct: 70 GAFLNENNICMCMEFMDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRD 129
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYS 576
I N+L++ + + DFG++ L +S VGT Y++P+ Y K DV+S
Sbjct: 130 IKPSNILVNSRGQIKLCDFGVSGELI--NSIADTFVGTSTYMSPERIQGGKYTVKSDVWS 187
Query: 577 FRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD-------PRLPPPS-PDVQGKLI 628
+ +E+ GK P F S+I M + ++L PRLP P+ +
Sbjct: 188 LGISIIELALGKFPFAF-SNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFPEDLRDFV 246
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQLLF 657
CL P RPT Q + F
Sbjct: 247 DA------CLLKDPTERPTPQQLCAMPPF 269
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284 |
| >gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 1e-06
Identities = 52/192 (27%), Positives = 74/192 (38%), Gaps = 39/192 (20%)
Query: 435 GSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFC 490
GS RA L S + A+K+ P S + D ++ E L K++H NIV F
Sbjct: 11 GSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRK---EAVLLAKMKHPNIVAFKESF 67
Query: 491 SHARHSILIYEY-----------LKRGSL---------------ATNLSNDAAAEELDIS 524
H ++ EY L+RG L ++ DI
Sbjct: 68 EADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIK 127
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFR 578
SKN+ L K + DFG A+ L + VGT YV P+ Y K D++S
Sbjct: 128 SKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLG 187
Query: 579 VLALEVIKGKHP 590
+ E+ KHP
Sbjct: 188 CILYELCTLKHP 199
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255 |
| >gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 71/309 (22%), Positives = 108/309 (34%), Gaps = 104/309 (33%)
Query: 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQ 465
D + ++RA+ G G G VY + +AVK S+Q D+
Sbjct: 6 DSITLLRAL---------GHGAFGEVYEGLYRGRDGDAVELQVAVKTLPE-SCSEQ--DE 53
Query: 466 KEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLAT--------------- 510
+F E ++K H+NIV+ G ++ E + G L +
Sbjct: 54 SDFLMEALIMSKFNHQNIVRLIGVSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSL 113
Query: 511 ------NLSNDAAA-----EEL-----DISSKNVLLDLE---HKAHVSDFGIAKFLKPDS 551
+ D A EE DI+++N LL + A ++DFG+A+ +
Sbjct: 114 TMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDI---- 169
Query: 552 SNWSALVGTYRYVAPDYRK-----------------------KCDVYSFRVLALEVIKGK 588
Y A YRK K DV+SF VL E+
Sbjct: 170 -----------YRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEI---- 214
Query: 589 HPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRP 646
F +P P N + E + RL PP G + IM C +PE RP
Sbjct: 215 ----FSLGYMPYPGRTNQEVMEFVTGGGRLDPP-KGCPGPVYRIMT---DCWQHTPEDRP 266
Query: 647 TMQTITQQL 655
TI +++
Sbjct: 267 NFATILERI 275
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277 |
| >gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 60/272 (22%), Positives = 107/272 (39%), Gaps = 67/272 (24%)
Query: 429 IGSGRHGSVYRA--ELPSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
+GSG G V + ++ K+ +A+K + ++ + + E E E + ++ + IV+
Sbjct: 3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKN---ENEKSVRDEMMREAEIMHQLDNPYIVR 59
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------ 521
G C A +L+ E G L LS +E+
Sbjct: 60 MIGVC-EAEALMLVMEMASGGPLNKFLS--GKKDEITVSNVVELMHQVSMGMKYLEGKNF 116
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG---TYRYVAPD---YRK-- 570
D++++NVLL +H A +SDFG++K L D S + A ++ AP+ +RK
Sbjct: 117 VHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFS 176
Query: 571 -KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVI-----NMRLDEMLDPRLPPPSPDV 623
+ DV+S+ + E G+ P + P V+ RLD P P
Sbjct: 177 SRSDVWSYGITMWEAFSYGQKP----YKKMKGPEVMSFIEQGKRLD------CPAECPP- 225
Query: 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ + C E RP + +++
Sbjct: 226 -----EMYALMKDCWIYKWEDRPNFAKVEERM 252
|
Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257 |
| >gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5 | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 47/252 (18%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIAD-QKEFFAEIEALTKIRHRNIVKF 486
+G G G+VY+A L ++ LAVK +P D + QK+ +E+E L K I+ F
Sbjct: 9 LGHGNGGTVYKAYHLLTRRILAVKV----IPLDITVELQKQIMSELEILYKCDSPYIIGF 64
Query: 487 YG-FCSHARHSILIYEYLKRGSLATN-------LSNDAAAE-------------ELDISS 525
YG F R SI E++ GSL L A A D+
Sbjct: 65 YGAFFVENRISICT-EFMDGGSLDVYRKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKP 123
Query: 526 KNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRV 579
N+L++ + + DFG++ L +S VGT Y+AP+ Y DV+S +
Sbjct: 124 SNMLVNTRGQVKLCDFGVSTQLV--NSIAKTYVGTNAYMAPERISGEQYGIHSDVWSLGI 181
Query: 580 LALEVIKGKHP----RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF 635
+E+ G+ P + S++P ++L + + PP P Q + +
Sbjct: 182 SFMELALGRFPYPQIQKNQGSLMP------LQLLQCIVDEDPPVLPVGQFSEKFVHFIT- 234
Query: 636 SCLDVSPESRPT 647
C+ P+ RP
Sbjct: 235 QCMRKQPKERPA 246
|
Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279 |
| >gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 1e-06
Identities = 61/242 (25%), Positives = 90/242 (37%), Gaps = 69/242 (28%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-----RHRNI 483
IG G +G VY+ LA K P I+D E EIEA I H N+
Sbjct: 30 IGKGTYGKVYKVTNKKDGSLAAVKILDP-----ISDVDE---EIEAEYNILQSLPNHPNV 81
Query: 484 VKFYGFCSHARHSI-----LIYEYLKRGSLA----------------------------- 509
VKFYG A + L+ E GS+
Sbjct: 82 VKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGL 141
Query: 510 TNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-- 567
+L N+ D+ N+LL E + DFG++ L + VGT ++AP+
Sbjct: 142 QHLHNNRIIHR-DVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVI 200
Query: 568 ---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618
Y +CDV+S + A+E+ G P + + P ++ + PR PP
Sbjct: 201 ACEQQYDYSYDARCDVWSLGITAIELGDGDPP---LFDMHPVKTLFKI-------PRNPP 250
Query: 619 PS 620
P+
Sbjct: 251 PT 252
|
Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291 |
| >gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4 | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 1e-06
Identities = 52/220 (23%), Positives = 94/220 (42%), Gaps = 43/220 (19%)
Query: 429 IGSGRHGSVYRAELPSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V A + S + +AVKK + L Q ++ F E+ + +H N+V+ Y
Sbjct: 28 IGEGSTGIVCIATVKSSGKLVAVKKMD--LRKQQ--RRELLFNEVVIMRDYQHENVVEMY 83
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-----------------------DIS 524
++ E+L+ G+L +++ EE DI
Sbjct: 84 NSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIK 143
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFR 578
S ++LL + + +SDFG + + +LVGT ++AP+ Y + D++S
Sbjct: 144 SDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLG 203
Query: 579 VLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618
++ +E++ G+ P P + M+ M+ LPP
Sbjct: 204 IMVIEMVDGEPP------YFNEPPLKAMK---MIRDNLPP 234
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292 |
| >gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 1e-06
Identities = 66/284 (23%), Positives = 104/284 (36%), Gaps = 76/284 (26%)
Query: 429 IGSGRHGSVYRAEL---------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+GSG G VY P + +AVK ++KEF E ++
Sbjct: 3 LGSGAFGEVYEGTATDILGPGSGPIR--VAVKTLRK---GATDQEKKEFLKEAHLMSNFN 57
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE---------------LDIS 524
H NIVK G C +I E ++ G L + L DA E LD++
Sbjct: 58 HPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYL-RDARVERFGPPLLTLKELLDICLDVA 116
Query: 525 SKNVLLDLEHKAH----------------------VSDFGIAKFLKPDSSNWSALVG--- 559
V L+ H H + DFG+A+ + S++ G
Sbjct: 117 KGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIY--KSDYYRKEGEGL 174
Query: 560 -TYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEM 611
R++AP+ + + DV+SF VL E++ G+ P +++ V+
Sbjct: 175 LPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQ----EVLQHVTAG- 229
Query: 612 LDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
RL P + K+ +M +C P RPT I + L
Sbjct: 230 --GRLQKP-ENCPDKIYQLMT---NCWAQDPSERPTFDRIQEIL 267
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269 |
| >gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2 | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 1e-06
Identities = 66/259 (25%), Positives = 106/259 (40%), Gaps = 61/259 (23%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQK--EFFAEIEALTKIRHRNIVK 485
IG G G+VY A ++ + E +A+KK + S + +++K + E+ L K+RH N ++
Sbjct: 23 IGHGSFGAVYFARDVRNSEVVAIKKMSY---SGKQSNEKWQDIIKEVRFLQKLRHPNTIQ 79
Query: 486 FYGFCSHARHSI-LIYEYLKRGSLATNLS-NDAAAEEL---------------------- 521
+ G C H+ L+ EY GS + L + +E+
Sbjct: 80 YRG-CYLREHTAWLVMEYC-LGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMI 137
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD---------YRK 570
D+ + N+LL + DFG A + P + VGT ++AP+ Y
Sbjct: 138 HRDVKAGNILLSEPGLVKLGDFGSASIMAPANX----FVGTPYWMAPEVILAMDEGQYDG 193
Query: 571 KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630
K DV+S + +E+ + K P + NM L SP +Q S
Sbjct: 194 KVDVWSLGITCIELAERK------------PPLFNMNAMSALYHIAQNESPALQSGHWSE 241
Query: 631 MEVAF--SCLDVSPESRPT 647
F SCL P+ RPT
Sbjct: 242 YFRNFVDSCLQKIPQDRPT 260
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308 |
| >gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 69/278 (24%), Positives = 104/278 (37%), Gaps = 72/278 (25%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-----RHRNI 483
IG G +G V++ A K P I D E EIEA I H N+
Sbjct: 26 IGKGTYGKVFKVLNKKNGSKAAVKILDP-----IHDIDE---EIEAEYNILKALSDHPNV 77
Query: 484 VKFYG------------------FCSHARHSILIYEYLKRGSLAT--------------- 510
VKFYG C+ + L+ +LKRG
Sbjct: 78 VKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGL 137
Query: 511 -NLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-- 567
+L + D+ N+LL E + DFG++ L + VGT ++AP+
Sbjct: 138 QHLHVNKTIHR-DVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVI 196
Query: 568 ---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618
Y +CDV+S + A+E+ G P ++ + P ++ + PR PP
Sbjct: 197 ACEQQLDSTYDARCDVWSLGITAIELGDGDPP---LADLHPMRALFKI-------PRNPP 246
Query: 619 PSPDVQGKLIS--IMEVAFSCLDVSPESRPTMQTITQQ 654
P+ Q +L S + CL E RPT+ + Q
Sbjct: 247 PTLH-QPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQH 283
|
Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286 |
| >gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1 | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 2e-06
Identities = 68/268 (25%), Positives = 112/268 (41%), Gaps = 61/268 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQK--EFFAEIEALTKIRHRNIVK 485
IG G G+VY A ++ + E +A+KK + S + +++K + E++ L +I+H N ++
Sbjct: 33 IGHGSFGAVYFARDVRTNEVVAIKKMSY---SGKQSNEKWQDIIKEVKFLQRIKHPNSIE 89
Query: 486 FYGFCSHARHSI-LIYEYLKRGSLATNLS--------------NDAAAEEL--------- 521
+ G C H+ L+ EY GS + L A + L
Sbjct: 90 YKG-CYLREHTAWLVMEYC-LGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMI 147
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD---------YRK 570
DI + N+LL + ++DFG A P +S VGT ++AP+ Y
Sbjct: 148 HRDIKAGNILLTEPGQVKLADFGSASIASPANS----FVGTPYWMAPEVILAMDEGQYDG 203
Query: 571 KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630
K DV+S + +E+ + K P + NM L SP +Q S
Sbjct: 204 KVDVWSLGITCIELAERK------------PPLFNMNAMSALYHIAQNESPTLQSNEWSD 251
Query: 631 MEVAF--SCLDVSPESRPTMQTITQQLL 656
F SCL P+ RPT + + + +
Sbjct: 252 YFRNFVDSCLQKIPQDRPTSEELLKHMF 279
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317 |
| >gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 56/258 (21%), Positives = 104/258 (40%), Gaps = 57/258 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G+G+ G V+ +A+K + F AE + +++H +V+ Y
Sbjct: 14 LGAGQFGEVWMGYYNGHTKVAIKSLKQ-----GSMSPEAFLAEANLMKQLQHPRLVRLYA 68
Query: 489 FCSHARHSILIY-EYLKRGSLATNLSNDAA---------------AEEL----------- 521
+ + I I EY++ GSL L AE +
Sbjct: 69 VVT--QEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHR 126
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD------YRKKC 572
D+ + N+L+ ++DFG+A+ ++ + ++A G ++ AP+ + K
Sbjct: 127 DLRAANILVSETLCCKIADFGLARLIEDNE--YTAREGAKFPIKWTAPEAINYGTFTIKS 184
Query: 573 DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD-VQGKLISIM 631
DV+SF +L E++ + R +P P + N + + L+ P PD +L +M
Sbjct: 185 DVWSFGILLTEIV--TYGR------IPYPGMTNPEVIQNLERGYRMPRPDNCPEELYELM 236
Query: 632 EVAFSCLDVSPESRPTMQ 649
C PE RPT +
Sbjct: 237 ---RLCWKEKPEERPTFE 251
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260 |
| >gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 39/191 (20%)
Query: 429 IGSGRHGSVYRAELPSKE---FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
+GSG G+V + K+ +AVK + ++ A + E E + ++ + IV+
Sbjct: 3 LGSGNFGTVKKGMYKMKKSEKTVAVKILKND--NNDPALKDELLREANVMQQLDNPYIVR 60
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------------------L 521
G C A +L+ E + G L L + E
Sbjct: 61 MIGIC-EAESWMLVMELAELGPLNKFLQKNKHVTEKNITELVHQVSMGMKYLEETNFVHR 119
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV-GTY--RYVAPD------YRKKC 572
D++++NVLL +H A +SDFG++K L D + + A G + ++ AP+ + K
Sbjct: 120 DLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKFSSKS 179
Query: 573 DVYSFRVLALE 583
DV+SF VL E
Sbjct: 180 DVWSFGVLMWE 190
|
Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257 |
| >gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4 | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 56/202 (27%), Positives = 83/202 (41%), Gaps = 44/202 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH-RNIVKF 486
IG G G+V + PS +AVK+ S D+ +QK +++ + + IVKF
Sbjct: 12 IGRGAFGTVNKMLHKPSGTIMAVKRIRST--VDE-KEQKRLLMDLDVVMRSSDCPYIVKF 68
Query: 487 YG---------FC------SHARHSILIYEYLKRG---------SLATNLSNDAAAEEL- 521
YG C S + +YE LK ++AT + + EEL
Sbjct: 69 YGALFREGDCWICMELMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELK 128
Query: 522 ----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD---------Y 568
D+ N+LLD + DFGI+ L DS + G Y+AP+ Y
Sbjct: 129 IIHRDVKPSNILLDRNGNIKLCDFGISGQLV-DSIAKTRDAGCRPYMAPERIDPSARDGY 187
Query: 569 RKKCDVYSFRVLALEVIKGKHP 590
+ DV+S + EV GK P
Sbjct: 188 DVRSDVWSLGITLYEVATGKFP 209
|
Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288 |
| >gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7 | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 58/279 (20%), Positives = 100/279 (35%), Gaps = 64/279 (22%)
Query: 420 INDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ +F + IG G+ VY+A L +A+KK D A Q EI+ L ++
Sbjct: 1 LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQD-CLKEIDLLKQL 59
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL----------------- 521
H N++K+ ++ E G L+ + + + L
Sbjct: 60 DHPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSAL 119
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD--- 567
DI NV + + D G+ +F ++ +LVGT Y++P+
Sbjct: 120 EHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIH 179
Query: 568 ---YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRL-------- 616
Y K D++S L E+ + L SP D+M L
Sbjct: 180 ENGYNFKSDIWSLGCLLYEM-----------AALQSP----FYGDKMNLYSLCKKIEKCD 224
Query: 617 --PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
P P+ +L ++ C++ PE RP + + Q
Sbjct: 225 YPPLPADHYSEELRDLVSR---CINPDPEKRPDISYVLQ 260
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267 |
| >gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 58/262 (22%), Positives = 94/262 (35%), Gaps = 70/262 (26%)
Query: 449 AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL 508
AVK P +++F E++ L+++ NI + G C+ +I EY++ G L
Sbjct: 50 AVKV---LRPDASDNAREDFLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDL 106
Query: 509 ATNLSNDAAA------------------------------EEL-----DISSKNVLLDLE 533
L A E L D++++N L+
Sbjct: 107 NQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVGKN 166
Query: 534 HKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------------DYRKKCDVYSFRVLA 581
+ ++DFG+++ L SS++ + G R P + K DV++F V
Sbjct: 167 YTIKIADFGMSRNLY--SSDYYRVQG--RAPLPIRWMAWESVLLGKFTTKSDVWAFGVTL 222
Query: 582 LEVIKGKHPRGFVSSILPSPSVI-NM----RLDEM--LDPRLPPPSPDVQGKLISIMEVA 634
E++ + + L VI N R D PR PP P I E+
Sbjct: 223 WEILTLCREQPY--EHLTDQQVIENAGHFFRDDGRQIYLPR-PPNCPK------DIYELM 273
Query: 635 FSCLDVSPESRPTMQTITQQLL 656
C E RPT + I L
Sbjct: 274 LECWRRDEEDRPTFREIHLFLQ 295
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296 |
| >gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 30/165 (18%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G HG V++A + + E +A+KK I +Q EI+AL +H +VK
Sbjct: 8 IGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQ--ALREIKALQACQHPYVVKLL 65
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSND--------------------AAAEEL-----D 522
H +L+ EY+ L+ L ++ A D
Sbjct: 66 DVFPHGSGFVLVMEYMPS-DLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRD 124
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN-WSALVGTYRYVAP 566
+ N+L+ + ++DFG+A+ + +S V T Y AP
Sbjct: 125 LKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAP 169
|
Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286 |
| >gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 39/198 (19%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IGSG G+VY+ P+ A+K + + +++ EIE L + H N+VK +
Sbjct: 82 IGSGAGGTVYKVIHRPTGRLYALKVIYG---NHEDTVRRQICREIEILRDVNHPNVVKCH 138
Query: 488 GFCSHARHSILIYEYLKRGSL-ATNLSNDAAAEEL-------------------DISSKN 527
H ++ E++ GSL T+++++ ++ DI N
Sbjct: 139 DMFDHNGEIQVLLEFMDGGSLEGTHIADEQFLADVARQILSGIAYLHRRHIVHRDIKPSN 198
Query: 528 VLLDLEHKAHVSDFGIAKFLKP--DSSNWSALVGTYRYVAPD----------YRKKC-DV 574
+L++ ++DFG+++ L D N S VGT Y++P+ Y D+
Sbjct: 199 LLINSAKNVKIADFGVSRILAQTMDPCNSS--VGTIAYMSPERINTDLNHGAYDGYAGDI 256
Query: 575 YSFRVLALEVIKGKHPRG 592
+S V LE G+ P G
Sbjct: 257 WSLGVSILEFYLGRFPFG 274
|
Length = 353 |
| >gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 5e-06
Identities = 65/279 (23%), Positives = 109/279 (39%), Gaps = 69/279 (24%)
Query: 429 IGSGRHGSVYRAELPSKEFL---AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
+G G GSV +L + + AVK + + ++ ++F +E + + H N+++
Sbjct: 7 LGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTR--SEMEDFLSEAVCMKEFDHPNVMR 64
Query: 486 FYGFCSHAR--------------------HSILIYE-------YLKRGSLATNLSNDAAA 518
G C HS L+Y YL L +++ A+
Sbjct: 65 LIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASG 124
Query: 519 EEL---------DISSKNVLLDLEHKAHVSDFGIAK-----------FLKPDSSNWSALV 558
E D++++N +L+ V+DFG++K + W A+
Sbjct: 125 MEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIE 184
Query: 559 GTYRYVAPDYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP--RL 616
V Y K DV+SF V E+ RG P P V N + + L RL
Sbjct: 185 SLADRV---YTTKSDVWSFGVTMWEIAT----RGQT----PYPGVENSEIYDYLRQGNRL 233
Query: 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P PD L S+M SC ++P+ RP+ +T+ +L
Sbjct: 234 KQP-PDCLDGLYSLM---SSCWLLNPKDRPSFETLRCEL 268
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272 |
| >gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5 | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 5e-06
Identities = 63/258 (24%), Positives = 108/258 (41%), Gaps = 47/258 (18%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V A E + + +AVKK + L Q ++ F E+ + H N+V Y
Sbjct: 30 IGEGSTGIVCIATEKHTGKQVAVKKMD--LRKQQ--RRELLFNEVVIMRDYHHENVVDMY 85
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-----------------------DIS 524
++ E+L+ G+L +++ EE DI
Sbjct: 86 NSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIK 145
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFR 578
S ++LL + + +SDFG + + +LVGT ++AP+ Y + D++S
Sbjct: 146 SDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLG 205
Query: 579 VLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCL 638
++ +E+I G+ P P + MR + LPP D K+ S++ F L
Sbjct: 206 IMVIEMIDGEPP------YFNEPPLQAMR---RIRDNLPPRVKDSH-KVSSVLR-GF--L 252
Query: 639 DVSPESRPTMQTITQQLL 656
D+ P+ + Q+LL
Sbjct: 253 DLMLVREPSQRATAQELL 270
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292 |
| >gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 5e-06
Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 38/204 (18%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+D++ +GSG +G VY+A L + E AVK D Q+E F E +
Sbjct: 9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKEC----K 64
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------ 521
H NIV ++G + EY GSL EL
Sbjct: 65 HCNIVAYFGSYLSREKLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHS 124
Query: 522 ------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------- 567
DI N+LL ++DFG+A + + + +GT ++AP+
Sbjct: 125 KGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEKNG 184
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
Y + CD+++ + A+E+ + + P
Sbjct: 185 GYNQLCDIWAVGITAIELAELQPP 208
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 111 RGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCP 170
RG IP + +L I+L GN++RG I + G +L LD+S N+F G I + G+
Sbjct: 431 RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490
Query: 171 KLSTLNVSMNNITRSIPLEIG 191
L LN++ N+++ +P +G
Sbjct: 491 SLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3 | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 6e-06
Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 43/202 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKF----NSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G G VY ++ + LA K+ SP S +++ + EI+ L ++H I
Sbjct: 10 LGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALE---CEIQLLKNLQHERI 66
Query: 484 VKFYG-FCSHARHSILIY-EYLKRGSLATNLSNDAAAEE--------------------- 520
V++YG A ++ I+ EY+ GS+ L A E
Sbjct: 67 VQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNM 126
Query: 521 ---LDISSKNVLLDLEHKAHVSDFGIAKFLKP---DSSNWSALVGTYRYVAPD------Y 568
DI N+L D + DFG +K L+ + ++ GT +++P+ Y
Sbjct: 127 IVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGY 186
Query: 569 RKKCDVYSFRVLALEVIKGKHP 590
+K DV+S +E++ K P
Sbjct: 187 GRKADVWSLGCTVVEMLTEKPP 208
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266 |
| >gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 6e-06
Identities = 60/288 (20%), Positives = 109/288 (37%), Gaps = 69/288 (23%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPS-DQIADQKEFFAEIEALTKIRHRNIVKF 486
+G G +G V + + + + +A+KKF L S D +K EI L ++RH N+V
Sbjct: 9 VGEGSYGMVMKCKHKETGQIVAIKKF---LESEDDKMVKKIAMREIRMLKQLRHENLVNL 65
Query: 487 YGFCSHARHSILIYEYLKR----------GSLATNLSNDAAAEEL--------------D 522
+ L++E++ L + + L D
Sbjct: 66 IEVFRRKKRLYLVFEFVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHNIIHRD 125
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVY 575
I +N+L+ + DFG A+ L ++ V T Y AP+ Y + D++
Sbjct: 126 IKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYGRAVDIW 185
Query: 576 SFRVLALEVIKGK-------------HPRGFVSSILP--------SPSVINMRLDEM--- 611
+ L E++ G+ H + +++P +P MRL E+
Sbjct: 186 AVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEI 245
Query: 612 --LDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657
L+ R P S ++++A CL + P+ RP+ + F
Sbjct: 246 EPLEKRFPKLSG-------LVLDLAKQCLRIDPDDRPSSSQLLHHEFF 286
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286 |
| >gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3 | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 7e-06
Identities = 60/268 (22%), Positives = 103/268 (38%), Gaps = 47/268 (17%)
Query: 422 DFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
DF+ IGSG +G VY+A + LA K P + A ++ EI + +H
Sbjct: 10 DFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQ---EIIMMKDCKHS 66
Query: 482 NIVKFYGFCSHARHSIL--IYEYLKRGSLATNLSNDAAAEEL------------------ 521
NIV ++G S+ R L E+ GSL E
Sbjct: 67 NIVAYFG--SYLRRDKLWICMEFCGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHS 124
Query: 522 ------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------- 567
DI N+LL ++DFG++ + + + +GT ++AP+
Sbjct: 125 KGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKG 184
Query: 568 -YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
Y + CD+++ + A+E+ + + P + + P ++ M P+L D
Sbjct: 185 GYNQLCDIWAVGITAIELAELQPP---MFDLHPMRALFLMTKSNFQPPKL----KDKMKW 237
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQ 654
S L +P+ RPT + + Q
Sbjct: 238 SNSFHHFVKMALTKNPKKRPTAEKLLQH 265
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267 |
| >gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 9e-06
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 27/145 (18%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR----YVAPD------YRKK 571
D++++NVLL A + DFG+A+ + D SN+ + G R ++AP+ Y +
Sbjct: 237 DVAARNVLLTDGRVAKICDFGLARDIMND-SNY-VVKGNARLPVKWMAPESIFDCVYTVQ 294
Query: 572 CDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLD--EMLDPRLPPPSPDVQGKLI 628
DV+S+ +L E+ GK P IL + M +M P PP ++
Sbjct: 295 SDVWSYGILLWEIFSLGKSP---YPGILVNSKFYKMVKRGYQMSRPDFAPP------EIY 345
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQ 653
SIM+ C ++ P RPT I+Q
Sbjct: 346 SIMK---MCWNLEPTERPTFSQISQ 367
|
Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374 |
| >gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 9e-06
Identities = 70/282 (24%), Positives = 113/282 (40%), Gaps = 70/282 (24%)
Query: 423 FDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RH 480
F+ +G+G +G VY+ + + + A+K + + D+ ++E EI L K H
Sbjct: 8 FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMD--VTGDE---EEEIKQEINMLKKYSHH 62
Query: 481 RNIVKFYG-FCSHARHSI-----LIYEYLKRGS---LATNLSNDAAAEEL---------- 521
RNI +YG F + L+ E+ GS L N + EE
Sbjct: 63 RNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILR 122
Query: 522 -------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD- 567
DI +NVLL + + DFG++ L + +GT ++AP+
Sbjct: 123 GLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEV 182
Query: 568 ----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617
Y K D++S + A+E+ +G P + + P ++ L PR P
Sbjct: 183 IACDENPDATYDFKSDLWSLGITAIEMAEGAPP---LCDMHPMRAL-------FLIPRNP 232
Query: 618 PP---SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656
P S K S +E SCL + RPT T+QL+
Sbjct: 233 APRLKSKKWSKKFQSFIE---SCLVKNHSQRPT----TEQLM 267
|
Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272 |
| >gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 68/274 (24%), Positives = 102/274 (37%), Gaps = 75/274 (27%)
Query: 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKE---FFAEIEALTKIRHR 481
IG G G VY L K AVK N +I D +E F E + H
Sbjct: 3 IGKGHFGCVYHGTLIDSDGQKIHCAVKSLN------RITDLEEVEQFLKEGIIMKDFSHP 56
Query: 482 NIVKFYGFCSHARHSILI-YEYLKRGSLAT---NLSNDAAAEEL---------------- 521
N++ G C + S L+ Y+K G L + +++ ++L
Sbjct: 57 NVLSLLGICLPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLAS 116
Query: 522 ------DISSKNVLLDLEHKAHVSDFGIAK------FLKPDSSN-------WSAL--VGT 560
D++++N +LD V+DFG+A+ + + W AL + T
Sbjct: 117 KKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQT 176
Query: 561 YRYVAPDYRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619
++ K DV+SF VL E++ +G P V S + L RL P
Sbjct: 177 QKFTT-----KSDVWSFGVLLWELMTRGAPPYPDVDSF----DITVYLLQ---GRRLLQP 224
Query: 620 S--PDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
PD + EV SC PE RPT +
Sbjct: 225 EYCPD------PLYEVMLSCWHPKPEMRPTFSEL 252
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262 |
| >gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 59/287 (20%), Positives = 104/287 (36%), Gaps = 78/287 (27%)
Query: 429 IGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHR 481
+G G G V +AE +AVK ++D +E+E + I +H+
Sbjct: 20 LGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSD---LVSEMEMMKMIGKHK 76
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSL------------ATNLSNDAAAEEL-------- 521
NI+ G C+ ++ EY G+L + + EE
Sbjct: 77 NIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVS 136
Query: 522 --------------------DISSKNVLLDLEHKAHVSDFGIAK------FLKPDSS--- 552
D++++NVL+ +H ++DFG+A+ + + ++
Sbjct: 137 FAYQVARGMEFLASKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRL 196
Query: 553 --NWSALVGTYRYVAPDYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDE 610
W A + V Y + DV+SF VL E+ F P P + L +
Sbjct: 197 PVKWMAPEALFDRV---YTHQSDVWSFGVLLWEI--------FTLGGSPYPGIPVEELFK 245
Query: 611 MLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+L R+ P + +L +M C P RPT + + + L
Sbjct: 246 LLKEGYRMEKP-QNCTQELYHLMR---DCWHEVPSQRPTFKQLVEDL 288
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293 |
| >gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 61/268 (22%), Positives = 101/268 (37%), Gaps = 58/268 (21%)
Query: 429 IGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIAD--QKEFFAEIEALTKIRHRNIVK 485
I G +G V+ A+ S + A+K +D I + E + L++ + +VK
Sbjct: 1 ISKGAYGRVFLAKKKSTGDIYAIKVIKK---ADMIRKNQVDQVLTERDILSQAQSPYVVK 57
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------------------L 521
Y ++ L+ EYL G LA+ L N + +E
Sbjct: 58 LYYSFQGKKNLYLVMEYLPGGDLASLLENVGSLDEDVARIYIAEIVLALEYLHSNGIIHR 117
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKF--------LKPDSSNWSALVGTYRYVAP------D 567
D+ N+L+D ++DFG++K L D +VGT Y+AP
Sbjct: 118 DLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQG 177
Query: 568 YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVI--NMRLDEMLDPRLPPPSPDVQG 625
+ K D +S + E + G P F +P I N+ ++ P S +
Sbjct: 178 HSKTVDWWSLGCILYEFLVGIPP--FHGE---TPEEIFQNILNGKIEWPEDVEVSDEAI- 231
Query: 626 KLISIMEVAFSCLDVSPESRPTMQTITQ 653
LIS + L PE R ++I +
Sbjct: 232 DLISKL------LVPDPEKRLGAKSIEE 253
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265 |
| >gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 52/202 (25%), Positives = 81/202 (40%), Gaps = 43/202 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFA---EIEALTKIRHRNIV 484
+G G G VY + + LAVK+ P D KE A EI+ L +RH IV
Sbjct: 10 LGRGAFGEVYLCYDADTGRELAVKQV--PFDPDSQETSKEVNALECEIQLLKNLRHDRIV 67
Query: 485 KFYGFC--SHARHSILIY-EYLKRGSLATNLSNDAAAEE--------------------- 520
++YG C + I+ EY+ GS+ L A E
Sbjct: 68 QYYG-CLRDPEEKKLSIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSNM 126
Query: 521 ---LDISSKNVLLDLEHKAHVSDFGIAKFLKP---DSSNWSALVGTYRYVAPD------Y 568
DI N+L D + DFG +K ++ + ++ GT +++P+ Y
Sbjct: 127 IVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGY 186
Query: 569 RKKCDVYSFRVLALEVIKGKHP 590
+K DV+S +E++ K P
Sbjct: 187 GRKADVWSVACTVVEMLTEKPP 208
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264 |
| >gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 62/260 (23%), Positives = 106/260 (40%), Gaps = 58/260 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G G G VY+A+ LA K +++ D + EIE L H IVK G
Sbjct: 20 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELED---YMVEIEILATCNHPYIVKLLG 76
Query: 489 -FCSHARHSILIYEYLKRGSL-ATNLSNDAAAEE------------------------LD 522
F + I+I E+ G++ A L D E D
Sbjct: 77 AFYWDGKLWIMI-EFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRD 135
Query: 523 ISSKNVLLDLEHKAHVSDFGI-AKFLKPDSSNWSALVGTYRYVAPD-----------YRK 570
+ + NVLL L+ ++DFG+ AK +K + +GT ++AP+ Y
Sbjct: 136 LKAGNVLLTLDGDIKLADFGVSAKNVKTLQRR-DSFIGTPYWMAPEVVMCETMKDTPYDY 194
Query: 571 KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP---SPDVQGKL 627
K D++S + +E+ + + P + +P + +++ + P L P S + +
Sbjct: 195 KADIWSLGITLIEMAQIEPPHHEL-----NPMRVLLKIAKSEPPTLSQPSKWSMEFR--- 246
Query: 628 ISIMEVAFSCLDVSPESRPT 647
++ A LD PE+RP+
Sbjct: 247 -DFLKTA---LDKHPETRPS 262
|
Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292 |
| >gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 62/247 (25%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFA-----EIEALTKIRHRN 482
IG G +G VY+A + E +A+KK + ++KE F EI+ L K+RH N
Sbjct: 7 IGEGTYGQVYKARNKKTGELVALKKIR-------MENEKEGFPITAIREIKLLQKLRHPN 59
Query: 483 IVKFYGFC-SHARHSI-LIYEYLK---RGSLATNLSNDAAAE------EL---------- 521
IV+ S + SI +++EY+ G L + ++ +L
Sbjct: 60 IVRLKEIVTSKGKGSIYMVFEYMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSN 119
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-NWSALVGTYRYVAP-------DY 568
DI N+L++ + ++DFG+A+ +S +++ V T Y P Y
Sbjct: 120 GILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRY 179
Query: 569 RKKCDVYSFRVLALEVIKGKHP-RGF--------VSSILPSP------SVINMRLDEMLD 613
+ D++S + E+ GK +G + + SP V + E L
Sbjct: 180 GPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFENLK 239
Query: 614 PRLPPPS 620
P+ P
Sbjct: 240 PKKPYKR 246
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287 |
| >gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 65/293 (22%), Positives = 103/293 (35%), Gaps = 83/293 (28%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G G +G V + + E +A+KKF D+ +K E++ L ++RH NIV
Sbjct: 9 VGEGAYGVVLKCRNKATGEIVAIKKFKE-SEDDEDV-KKTALREVKVLRQLRHENIVNLK 66
Query: 488 GFCSHARHSILIYEYLKRGSL------ATNLSNDA----------AAEEL--------DI 523
L++EY++R L L DA A DI
Sbjct: 67 EAFRRKGRLYLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDI 126
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLK-PDSSNWSALVGTYRYVAPD-------YRKKCDVY 575
+N+L+ + DFG A+ L+ +S + V T Y AP+ Y K DV+
Sbjct: 127 KPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVW 186
Query: 576 SFRVLALEVIKG--------------------------------KHPRGFVSSILPSPSV 603
+ + E++ G +PR F P PS
Sbjct: 187 AIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPR-FAGVAFPEPSQ 245
Query: 604 INMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656
E L+ R P ++ +CL + P+ R T +LL
Sbjct: 246 P-----ESLERRYPGKVSSP------ALDFLKACLRMDPKERLT----CDELL 283
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288 |
| >gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 67/280 (23%), Positives = 111/280 (39%), Gaps = 56/280 (20%)
Query: 414 VEIIRAINDFDAKYCIGSGRHGSVYRAELPSKE----FLAVKKFNSPLPSDQIADQKEFF 469
EI R D CIG G+ G VY+ S E +AVK + + +++F
Sbjct: 1 YEIQR--EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKN---CTSPSVREKFL 55
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------- 521
E + + H +IVK G + ++ E G L + L + + +L
Sbjct: 56 QEAYIMRQFDHPHIVKLIGVITE-NPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSY 114
Query: 522 -----------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--R 562
DI+++NVL+ + DFG++++L+ D S + A G +
Sbjct: 115 QLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLE-DESYYKASKGKLPIK 173
Query: 563 YVAPD---YRK---KCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPR 615
++AP+ +R+ DV+ F V E++ G P V + VI R++
Sbjct: 174 WMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGV----KNNDVI-GRIENGERLP 228
Query: 616 LPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+PP P L S+M C P RP + QL
Sbjct: 229 MPPNCPPT---LYSLMT---KCWAYDPSKRPRFTELKAQL 262
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270 |
| >gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 19/138 (13%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCD 573
DI S N+LL + DFG +K S+ GT YVAP+ Y KK D
Sbjct: 168 DIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKAD 227
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEV 633
++S VL E++ K P + V++ L DP P SP++Q E+
Sbjct: 228 MFSLGVLLYELLTLKRPFDGEN----MEEVMHKTLAGRYDPLPPSISPEMQ-------EI 276
Query: 634 AFSCLDVSPESRPTMQTI 651
+ L P+ RP+ +
Sbjct: 277 VTALLSSDPKRRPSSSKL 294
|
Length = 496 |
| >gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 429 IGSGRHGSVYRAE----LPSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
IG G G V++A LP + F AVK S + Q +F E + + H N
Sbjct: 13 IGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEE-ASADM--QADFQREAALMAEFDHPN 69
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSL 508
IVK G C+ + L++EY+ G L
Sbjct: 70 IVKLLGVCAVGKPMCLLFEYMAYGDL 95
|
Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288 |
| >gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 5e-05
Identities = 50/218 (22%), Positives = 89/218 (40%), Gaps = 60/218 (27%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSKEFL----AVKKFNSPLPSDQIADQKEFFAEIEALT 476
ND + IG G G V +A + K+ L A+K+ D D ++F E+E L
Sbjct: 7 NDIKFQDVIGEGNFGQVLKARI-KKDGLRMDAAIKRMKEYASKD---DHRDFAGELEVLC 62
Query: 477 KI-RHRNIVKFYGFCSHARHSILIYEYLKRGSL------------------ATNLSNDAA 517
K+ H NI+ G C H + L EY G+L A + ++ +
Sbjct: 63 KLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLS 122
Query: 518 AEEL----------------------DISSKNVLLDLEHKAHVSDFGIAK----FLKPDS 551
+++L D++++N+L+ + A ++DFG+++ ++K
Sbjct: 123 SQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTM 182
Query: 552 S----NWSALVGTYRYVAPDYRKKCDVYSFRVLALEVI 585
W A+ V Y DV+S+ VL E++
Sbjct: 183 GRLPVRWMAIESLNYSV---YTTNSDVWSYGVLLWEIV 217
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303 |
| >gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 58/206 (28%), Positives = 88/206 (42%), Gaps = 43/206 (20%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKE---FFAEIEAL 475
++DF+ +G+G G V A+ + E+ A+K L +I K+ E L
Sbjct: 17 LSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIK----CLKKREILKMKQVQHVAQEKSIL 72
Query: 476 TKIRHRNIVKFY-GFCSHARHSILIYEYLKRGSLATNLS------NDAA----AEEL--- 521
++ H IV F R L+ E++ G L T+L ND A AE +
Sbjct: 73 MELSHPFIVNMMCSFQDENRVYFLL-EFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAF 131
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD--- 567
D+ +N+LLD + V+DFG AK + PD + L GT Y+AP+
Sbjct: 132 EYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKV-PDRT--FTLCGTPEYLAPEVIQ 188
Query: 568 ---YRKKCDVYSFRVLALEVIKGKHP 590
+ K D ++ VL E I G P
Sbjct: 189 SKGHGKAVDWWTMGVLLYEFIAGYPP 214
|
Length = 329 |
| >gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 62/264 (23%), Positives = 114/264 (43%), Gaps = 52/264 (19%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFA--EIEALTKIRHRNIVKF 486
+G G G V+ + + L + K +P +Q+ + A E + L + H NI+++
Sbjct: 8 VGRGAFGIVHLCRRKADQKLVIIKQ---IPVEQMTKDERLAAQNECQVLKLLSHPNIIEY 64
Query: 487 YGFCSHARHSILIYEYLKRGSLATNLS---NDAAAEEL---------------------- 521
Y + +++ EY G+LA + N E+
Sbjct: 65 YENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILH 124
Query: 522 -DISSKNVLLDLEHK--AHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKC 572
D+ ++N+LLD +HK + DFGI+K L S ++ +VGT Y++P+ Y +K
Sbjct: 125 RDLKTQNILLD-KHKMVVKIGDFGISKILSSKSKAYT-VVGTPCYISPELCEGKPYNQKS 182
Query: 573 DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
D+++ + E+ K R F ++ LP+ + M P SPD++ +
Sbjct: 183 DIWALGCVLYELASLK--RAFEAANLPALVLKIMS--GTFAPISDRYSPDLR-------Q 231
Query: 633 VAFSCLDVSPESRPTMQTITQQLL 656
+ S L++ P RP + I Q +
Sbjct: 232 LILSMLNLDPSKRPQLSQIMAQPI 255
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256 |
| >gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 64/278 (23%), Positives = 102/278 (36%), Gaps = 66/278 (23%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIA--DQKEFFAEIEALTKIRHRNIVKF 486
+G G GSV +L + +K + D + +EF +E + H N++K
Sbjct: 7 LGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKL 66
Query: 487 YGFCSHARHS------ILIYEYLKRGSLATNLSN--------------------DAAA-- 518
G C A ++I ++K G L + L D A
Sbjct: 67 IGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGM 126
Query: 519 EEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDS-----------SNWSALVG 559
E L D++++N +L + V+DFG++K + W A+
Sbjct: 127 EYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIES 186
Query: 560 TYRYVAPDYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML--DPRLP 617
V Y K DV++F V E+ RG P P V N + + L RL
Sbjct: 187 LADRV---YTSKSDVWAFGVTMWEIAT----RGQT----PYPGVENHEIYDYLRHGNRLK 235
Query: 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P D +L +M +SC P+ RPT + + L
Sbjct: 236 QP-EDCLDELYDLM---YSCWRADPKDRPTFTKLREVL 269
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273 |
| >gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3 | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 65/278 (23%), Positives = 104/278 (37%), Gaps = 66/278 (23%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIA--DQKEFFAEIEALTKIRHRNIVKF 486
+G G GSV A+L S++ K L +D + D +EF E + + H N++K
Sbjct: 7 LGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKL 66
Query: 487 YGFCSHARHS------ILIYEYLKRGSLATNLSNDAAAEE-------------------- 520
G +R ++I ++K G L T L EE
Sbjct: 67 IGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGM 126
Query: 521 ----------LDISSKNVLLDLEHKAHVSDFGIAK------FLKPDSSN-----WSALVG 559
D++++N +L+ V+DFG++K + + ++ W AL
Sbjct: 127 EYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALES 186
Query: 560 TYRYVAPDYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML--DPRLP 617
V Y DV++F V E++ RG P V N + L RL
Sbjct: 187 LADNV---YTTHSDVWAFGVTMWEIMT----RGQT----PYAGVENSEIYNYLIKGNRLK 235
Query: 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P PD + +M C P+ RP+ Q + QL
Sbjct: 236 QP-PDCLEDVYELM---CQCWSPEPKCRPSFQHLRDQL 269
|
Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273 |
| >gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 53/214 (24%)
Query: 408 KGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKE 467
+G F V ++R I DA G +Y ++ K L V+ D+
Sbjct: 6 QGSFGKVFLVRKITGPDA---------GQLYAMKVLKKATLKVR------------DRVR 44
Query: 468 FFAEIEALTKIRHRNIVKF-YGFCSHARHSILIYEYLKRGSLATNLSNDA---------- 516
E + L ++ H IVK Y F + + LI ++L+ G L T LS +
Sbjct: 45 TKMERDILAEVNHPFIVKLHYAFQTEGK-LYLILDFLRGGDLFTRLSKEVMFTEEDVKFY 103
Query: 517 ------AAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR 562
A + L D+ +N+LLD E ++DFG++K + GT
Sbjct: 104 LAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVE 163
Query: 563 YVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
Y+AP+ + + D +SF VL E++ G P
Sbjct: 164 YMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLP 197
|
Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318 |
| >gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2 | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 54/234 (23%), Positives = 92/234 (39%), Gaps = 47/234 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKK--FN--SPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G G VY + + LAVK+ F+ SP S ++ + EI+ L + H I
Sbjct: 10 LGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALE---CEIQLLKNLLHERI 66
Query: 484 VKFYGFCSHARHSIL--IYEYLKRGSLATNLSNDAAAEE--------------------- 520
V++YG L E++ GS+ L + A E
Sbjct: 67 VQYYGCLRDPMERTLSIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSNM 126
Query: 521 ---LDISSKNVLLDLEHKAHVSDFGIAKFLKP---DSSNWSALVGTYRYVAPD------Y 568
DI N+L D + DFG +K L+ + ++ GT +++P+ Y
Sbjct: 127 IVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGY 186
Query: 569 RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622
+K D++S +E++ K P ++ + I + +P LPP D
Sbjct: 187 GRKADIWSVGCTVVEMLTEKPPWAEFEAM----AAIFKIATQPTNPVLPPHVSD 236
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265 |
| >gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 61/279 (21%), Positives = 115/279 (41%), Gaps = 62/279 (22%)
Query: 415 EIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEA 474
EI R + K +G+G+ G V+ A +AVK S + F AE
Sbjct: 2 EIPRESLKLEKK--LGAGQFGEVWMATYNKHTKVAVKTMKPGSMS-----VEAFLAEANV 54
Query: 475 LTKIRHRNIVKFYGFCSHARHSI-LIYEYLKRGSLATNLSNDAA---------------A 518
+ ++H +VK + + + I +I E++ +GSL L +D A
Sbjct: 55 MKTLQHDKLVKLHAVVT--KEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIA 112
Query: 519 EEL-----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYV 564
E + D+ + N+L+ ++DFG+A+ + + + ++A G ++
Sbjct: 113 EGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVI--EDNEYTAREGAKFPIKWT 170
Query: 565 APD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617
AP+ + K DV+SF +L +E++ G+ +P P + N + L+
Sbjct: 171 APEAINFGSFTIKSDVWSFGILLMEIVTYGR---------IPYPGMSNPEVIRALERGYR 221
Query: 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPT---MQTITQ 653
P P+ + + + C PE RPT +Q++
Sbjct: 222 MPRPENCPE--ELYNIMMRCWKNRPEERPTFEYIQSVLD 258
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260 |
| >gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 429 IGSGRHGSVYRAEL----PSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
+G G G VY + A+K N + + ++ EF E + + +
Sbjct: 14 LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVN---ENASMRERIEFLNEASVMKEFNCHH 70
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSLATNL 512
+V+ G S + ++++ E + +G L + L
Sbjct: 71 VVRLLGVVSTGQPTLVVMELMAKGDLKSYL 100
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277 |
| >gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3 | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 61/257 (23%), Positives = 100/257 (38%), Gaps = 57/257 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQ-KEFFAEIEALTKIRHRNIVKF 486
IG G G+VY A + E +AVKK + Q ++ ++ E++ L +++H N +++
Sbjct: 29 IGHGSFGAVYFATNSHTNEVVAVKKMS--YSGKQTNEKWQDIIKEVKFLQQLKHPNTIEY 86
Query: 487 YGFCSHARHSI-LIYEY-----------------------LKRGSL-ATNLSNDAAAEEL 521
G C H+ L+ EY + G+L +
Sbjct: 87 KG-CYLKEHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHR 145
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD---------YRKKC 572
DI + N+LL + ++DFG A P +S VGT ++AP+ Y K
Sbjct: 146 DIKAGNILLTEPGQVKLADFGSASKSSPANS----FVGTPYWMAPEVILAMDEGQYDGKV 201
Query: 573 DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
DV+S + +E+ + K P + NM L SP +Q +
Sbjct: 202 DVWSLGITCIELAERK------------PPLFNMNAMSALYHIAQNDSPTLQSNEWTDSF 249
Query: 633 VAFS--CLDVSPESRPT 647
F CL P+ RP
Sbjct: 250 RGFVDYCLQKIPQERPA 266
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313 |
| >gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2 | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 48/221 (21%), Positives = 82/221 (37%), Gaps = 45/221 (20%)
Query: 413 YVEIIRAI-------NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQ 465
Y +I+R I D+D IG G G V S + + K S + +D
Sbjct: 28 YEKIVRKIRKLQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDS 87
Query: 466 KEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL---- 521
F+ E + + +V+ + ++ ++ EY+ G L +SN E+
Sbjct: 88 AFFWEERDIMAFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMSNYDVPEKWAKFY 147
Query: 522 -------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW---SALVG 559
D+ N+LLD ++DFG +K D + VG
Sbjct: 148 TAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTC--MKMDETGMVRCDTAVG 205
Query: 560 TYRYVAPD----------YRKKCDVYSFRVLALEVIKGKHP 590
T Y++P+ Y ++CD +S V E++ G P
Sbjct: 206 TPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTP 246
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370 |
| >gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 63/258 (24%), Positives = 103/258 (39%), Gaps = 59/258 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQK--EFFAEIEALTKIRHRNIVK 485
IG G G+VY A ++ + E +A+KK + S + +++K + E+ L ++RH N ++
Sbjct: 23 IGHGSFGAVYFARDVRTNEVVAIKKMSY---SGKQSNEKWQDIIKEVRFLQQLRHPNTIE 79
Query: 486 FYGFCSHARHSI-LIYEY---------------LKRGSLATNLSNDAAAEEL-------- 521
+ G C H+ L+ EY L+ +A
Sbjct: 80 YKG-CYLREHTAWLVMEYCLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIH 138
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD---------YRKK 571
DI + N+LL ++DFG A + P +S VGT ++AP+ Y K
Sbjct: 139 RDIKAGNILLTEPGTVKLADFGSASLVSPANS----FVGTPYWMAPEVILAMDEGQYDGK 194
Query: 572 CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIM 631
DV+S + +E+ + K P + NM L SP + S
Sbjct: 195 VDVWSLGITCIELAERK------------PPLFNMNAMSALYHIAQNDSPTLSSNDWSDY 242
Query: 632 EVAF--SCLDVSPESRPT 647
F SCL P+ RP+
Sbjct: 243 FRNFVDSCLQKIPQDRPS 260
|
Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307 |
| >gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 507 SLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAK-FLKPDSSNWSALVGTYRYVA 565
SLA N ++ D+ NVLLD E ++D+G+ K L+P + S GT Y+A
Sbjct: 106 SLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTT-STFCGTPNYIA 164
Query: 566 P------DYRKKCDVYSFRVLALEVIKGKHPRGFVSS 596
P DY D ++ VL E++ G+ P V S
Sbjct: 165 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGS 201
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329 |
| >gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 36/139 (25%)
Query: 486 FYGFCSHAR-HSILIYEYLKRGSLATNLSNDA----------------AAEEL------- 521
Y F + + H LI +Y+ G L T+L A + L
Sbjct: 71 HYAFQTDTKLH--LILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQLGIIY 128
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAK-FLKPDSSNWSALVGTYRYVAPD--------YRKK 571
DI +N+LLD E ++DFG++K FL + + GT Y+AP+ + K
Sbjct: 129 RDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKA 188
Query: 572 CDVYSFRVLALEVIKGKHP 590
D +S VL E++ G P
Sbjct: 189 VDWWSLGVLTFELLTGASP 207
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
++T+L L L N G IP L SL L L GN G +P+++G R F F
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523
Query: 61 NN 62
+N
Sbjct: 524 DN 525
|
Length = 623 |
| >gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 3e-04
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 42/204 (20%)
Query: 422 DFDAKYCIGSGRHGSVYRAELPSKEF--LAVKKFNSPLPSDQIADQKEF---FAEIEALT 476
DF+ +G+G G V A +++F +A+K+F +I QK+ F+E + L
Sbjct: 31 DFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEK----SKIIKQKQVDHVFSERKILN 86
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS------NDA----AAEEL----- 521
I H V YG + L+ E++ G T L ND AA+ +
Sbjct: 87 YINHPFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEY 146
Query: 522 ---------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
D+ +N+LLD + ++DFG AK + D+ ++ L GT Y+AP+
Sbjct: 147 LQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVV--DTRTYT-LCGTPEYIAPEILLNV 203
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP 590
+ K D ++ + E++ G P
Sbjct: 204 GHGKAADWWTLGIFIYEILVGCPP 227
|
Length = 340 |
| >gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 59/273 (21%), Positives = 105/273 (38%), Gaps = 68/273 (24%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQ--KEFFAEIE----ALTKIRHR 481
+GSG G+V++ +P + + + P+ I D+ ++ F EI A+ + H
Sbjct: 15 LGSGVFGTVHKGIWIPEGDSIKI-----PVAIKTIQDRSGRQTFQEITDHMLAMGSLDHA 69
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAA--------------------EE- 520
IV+ G C A L+ + GSL ++ + EE
Sbjct: 70 YIVRLLGICPGASLQ-LVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEH 128
Query: 521 ----LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------Y 568
+++++N+LL + ++DFG+A L PD +S +++A + Y
Sbjct: 129 RMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRY 188
Query: 569 RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLD-----PRLPPPSPD 622
+ DV+S+ V E++ G P MR E+ D RL P
Sbjct: 189 THQSDVWSYGVTVWEMMSYGAEPYA------------GMRPHEVPDLLEKGERLAQP--- 233
Query: 623 VQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
Q I + V C + RPT + + +
Sbjct: 234 -QICTIDVYMVMVKCWMIDENVRPTFKELANEF 265
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279 |
| >gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 58/243 (23%), Positives = 99/243 (40%), Gaps = 59/243 (24%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK-- 485
IG G +G V A + + E +A+KK N + ++D EI+ L +RH +IV+
Sbjct: 8 IGKGSYGVVCSAIDTHTGEKVAIKKINDVF--EHVSDATRILREIKLLRLLRHPDIVEIK 65
Query: 486 --------------FYGF----------------CSHARHSILIYEYLKRGSLATNLSND 515
+ F + H +Y+ L+ A +
Sbjct: 66 HIMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLR----ALKYIHT 121
Query: 516 AAAEELDISSKNVLLDLEHKAHVSDFGIAK--FLK-PDSSNWSALVGTYRYVAPD----- 567
A D+ KN+L + + K + DFG+A+ F P + W+ V T Y AP+
Sbjct: 122 ANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSF 181
Query: 568 ---YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624
Y D++S + EV+ GK + P +V++ +LD + D L PSP+
Sbjct: 182 FSKYTPAIDIWSIGCIFAEVLTGK-------PLFPGKNVVH-QLDLITD-LLGTPSPETI 232
Query: 625 GKL 627
++
Sbjct: 233 SRV 235
|
Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338 |
| >gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL-VGTYRYVAPD-----------YR 569
DI NVLLD ++DFG L D + S + VGT Y++P+ Y
Sbjct: 127 DIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYG 186
Query: 570 KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623
+CD +S V E++ G+ P + S++ + I M E PP DV
Sbjct: 187 PECDWWSLGVCMYEMLYGETPF-YAESLVETYGKI-MNHKEHFQ--FPPDVTDV 236
|
Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 4e-04
Identities = 23/60 (38%), Positives = 28/60 (46%)
Query: 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNL 63
NL+ L L +N LT + L +L L L GN P + L SLR L L NNL
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 4e-04
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 219 SLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
+L L L N + +P L L+ L+LS N +S+ PE+ L L LDLS
Sbjct: 1 NLKSLDLSNN-RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLS 56
|
Length = 60 |
| >gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7 | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 4e-04
Identities = 57/260 (21%), Positives = 101/260 (38%), Gaps = 44/260 (16%)
Query: 422 DFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
+F + IG G+ VYRA L +A+KK D A + EI+ L ++ H
Sbjct: 3 NFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARA-DCIKEIDLLKQLNH 61
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------- 521
N++K+Y ++ E G L+ + + + L
Sbjct: 62 PNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEH 121
Query: 522 ---------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI NV + + D G+ +F ++ +LVGT Y++P+
Sbjct: 122 MHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHEN 181
Query: 568 -YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
Y K D++S L E+ + P F + S+ ++++ P P PS +
Sbjct: 182 GYNFKSDIWSLGCLLYEMAALQSP--FYGDKMNLYSLCK-KIEQCDYP--PLPSDHYSEE 236
Query: 627 LISIMEVAFSCLDVSPESRP 646
L ++ + C++ PE RP
Sbjct: 237 LRQLVNM---CINPDPEKRP 253
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267 |
| >gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 60/264 (22%), Positives = 113/264 (42%), Gaps = 59/264 (22%)
Query: 429 IGSGRHGSVY--RAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT--------KI 478
+GSG G VY R + + LA+K+ N P+ D++E I + ++
Sbjct: 8 LGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFG-KDKRERDKSIGDIVSEVTIIKEQL 66
Query: 479 RHRNIVKFY-GFCSHARHSILIYEYLKRGSLATNLSN-----DAAAEE------------ 520
RH NIV++Y F + R I++ + ++ L + ++ EE
Sbjct: 67 RHPNIVRYYKTFLENDRLYIVM-DLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLA 125
Query: 521 ------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD- 567
D++ N++L + K ++DFG+AK +P+S S VGT Y P+
Sbjct: 126 LRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPESKLTSV-VGTILYSCPEI 184
Query: 568 -----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622
Y +K DV++F + ++ + P F S+ + S + ++++ P
Sbjct: 185 VKNEPYGEKADVWAFGCILYQMCTLQPP--FYSTNMLSLAT------KIVEAVYEPLPEG 236
Query: 623 VQGKLISIMEVAFSCLDVSPESRP 646
+ + ++ + SCL E+RP
Sbjct: 237 MYSEDVTDV--ITSCLTPDAEARP 258
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269 |
| >gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2 | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAK-FLKPDSSNWSALVGTYRYVAPD-------YRKKCD 573
DI +N+LLD E ++DFG++K FL + + GT Y+AP+ + K D
Sbjct: 130 DIKLENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVD 189
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSVIN--MRLDEMLDPRLPPPSPDVQGKLI 628
+S +L E++ G P V ++ D + P + D+ KL+
Sbjct: 190 WWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDPPFPSFIGPEAQDLLHKLL 246
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332 |
| >gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 5e-04
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D+ NV+LD E ++DFG+ K D GT Y+AP+ Y K D +
Sbjct: 126 DLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWW 185
Query: 576 SFRVLALEVIKGKHP 590
+F VL E++ G+ P
Sbjct: 186 AFGVLLYEMLAGQAP 200
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323 |
| >gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 6e-04
Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 44/228 (19%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK--- 485
+G G G VY+A+ LA K +++ D + EI+ L H NIVK
Sbjct: 13 LGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELED---YMVEIDILASCDHPNIVKLLD 69
Query: 486 -FY---------GFCSHARHSILIYEY------------LKRGSLATNLSNDAAAEELDI 523
FY FC+ ++ E K+ A N ++ D+
Sbjct: 70 AFYYENNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHENKIIHRDL 129
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-----------YRKKC 572
+ N+L L+ ++DFG++ + +GT ++AP+ Y K
Sbjct: 130 KAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKA 189
Query: 573 DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620
DV+S + +E+ + + P + +P + +++ + P L PS
Sbjct: 190 DVWSLGITLIEMAQIEPPHHEL-----NPMRVLLKIAKSEPPTLAQPS 232
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 7e-04
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 171 KLSTLNVSMNNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQ 229
L +L++S N +T IP L L DLS N++ P+ F L SL L L GN
Sbjct: 1 NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 230 L 230
L
Sbjct: 60 L 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 7e-04
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 243 KLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKE-LGKLVQLSELELSHN 300
L+ L+LS NR + + + L L LDLS + + E L L L+LS N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNN-LTSISPEAFSGLPSLRSLDLSGN 58
|
Length = 60 |
| >gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 16/90 (17%)
Query: 423 FDAKYCIGSGRHGSVYRA---ELPSKEFLAVKKFNSPLPSDQIADQKEFFA-----EIEA 474
++ + CIG G +G VY+A + A+KKF +Q + EI
Sbjct: 2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGD------KEQYTGISQSACREIAL 55
Query: 475 LTKIRHRNIVKFYG-FCSHARHSI-LIYEY 502
L +++H N+V F HA S+ L+++Y
Sbjct: 56 LRELKHENVVSLVEVFLEHADKSVYLLFDY 85
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316 |
| >gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 7e-04
Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 38/182 (20%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKF-----NSPLPSDQIADQKEFFAEIEALTKIRHRN 482
IG G +G VY+A + E +A+KK +PS I EI L ++ H N
Sbjct: 8 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIR-------EISLLKELNHPN 60
Query: 483 IVKFYGFCSHARHSILIYEYLKR-----------GSLATNLSNDAAAEEL---------- 521
IVK L++E+L + + L + L
Sbjct: 61 IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHR 120
Query: 522 ----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKCDVYSF 577
D+ +N+L++ E ++DFG+A+ ++ V T Y AP+ C YS
Sbjct: 121 VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYST 180
Query: 578 RV 579
V
Sbjct: 181 AV 182
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284 |
| >gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 8e-04
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D+ NVLLD + ++DFG+ K S GT Y+AP+ Y + D +
Sbjct: 121 DLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQKYNESVDWW 180
Query: 576 SFRVLALEVIKGKHP 590
SF VL E++ G+ P
Sbjct: 181 SFGVLLYEMLIGQSP 195
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316 |
| >gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1 | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 8e-04
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 33/126 (26%)
Query: 498 LIYEYLKRGSLATNLSNDA----------------AAEEL--------DISSKNVLLDLE 533
LI +Y+ G L T+LS A E L DI +N+LLD
Sbjct: 82 LILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSN 141
Query: 534 HKAHVSDFGIAK-FLKPDSSNWSALVGTYRYVAPD--------YRKKCDVYSFRVLALEV 584
++DFG++K F + + + GT Y+APD + K D +S VL E+
Sbjct: 142 GHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYEL 201
Query: 585 IKGKHP 590
+ G P
Sbjct: 202 LTGASP 207
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290 |
| >gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 49/196 (25%), Positives = 77/196 (39%), Gaps = 37/196 (18%)
Query: 429 IGSGRHGSVYRAELP-SKEFLAVK--KFNSPLPSDQIADQKEFFAEIEALT-KIRHRNIV 484
+G G G V+ AEL + +F A+K K + L D D + E L+ H +
Sbjct: 3 LGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDD---DVECTMVEKRVLSLAWEHPFLT 59
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNL----------SNDAAAEEL------------- 521
Y + + EYL G L ++ + AAE +
Sbjct: 60 HLYCTFQTKENLFFVMEYLNGGDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIVY 119
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDV 574
D+ N+LLD + ++DFG+ K + GT Y+AP+ Y D
Sbjct: 120 RDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQKYNTSVDW 179
Query: 575 YSFRVLALEVIKGKHP 590
+SF VL E++ G+ P
Sbjct: 180 WSFGVLLYEMLIGQSP 195
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316 |
| >gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 65/289 (22%), Positives = 112/289 (38%), Gaps = 80/289 (27%)
Query: 429 IGSGRHGSVYRAEL-------PSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE P++ +AVK S ++D +E+E + I +
Sbjct: 26 LGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSD---LISEMEMMKMIGK 82
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNL------------SNDAAAEEL------ 521
H+NI+ G C+ +I EY +G+L L + EE
Sbjct: 83 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDL 142
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLK-----PDSSNW 554
D++++NVL+ ++ ++DFG+A+ + ++N
Sbjct: 143 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNG 202
Query: 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRL 608
V +++AP+ Y + DV+SF VL E+ F P P V L
Sbjct: 203 RLPV---KWMAPEALFDRIYTHQSDVWSFGVLLWEI--------FTLGGSPYPGVPVEEL 251
Query: 609 DEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
++L R+ PS + +L +M C P RPT + + + L
Sbjct: 252 FKLLKEGHRMDKPS-NCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 296
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307 |
| >gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 65/275 (23%), Positives = 105/275 (38%), Gaps = 72/275 (26%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEF---FAEIEALTKIRHRNIV 484
+G G +GSVY+ P+ +A+K+ L D+ +F E++ L K IV
Sbjct: 9 LGKGNYGSVYKVLHRPTGVTMAMKEIRLEL------DESKFNQIIMELDILHKAVSPYIV 62
Query: 485 KFYGFCSHARHSILIYEYLKRGSLAT--------------NLSNDAAA---------EEL 521
FYG + EY+ GSL L A EE
Sbjct: 63 DFYGAFFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEH 122
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD--------- 567
D+ NVL++ + + DFG++ L + + +G Y+AP+
Sbjct: 123 NIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAKTN--IGCQSYMAPERIKSGGPNQ 180
Query: 568 ---YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM--RLDEMLD---PRLPPP 619
Y + DV+S + LE+ G++P P + N+ +L ++D P LP
Sbjct: 181 NPTYTVQSDVWSLGLSILEMALGRYP-------YPPETYANIFAQLSAIVDGDPPTLPSG 233
Query: 620 -SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
S D Q + CL+ P RPT + +
Sbjct: 234 YSDDAQ-------DFVAKCLNKIPNRRPTYAQLLE 261
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286 |
| >gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 46/199 (23%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKF-----NSPLPSDQIADQKEFFAEIEALTKIRHRN 482
IG G +G VY+A + + E +A+KK + +PS I EI L +++H N
Sbjct: 10 IGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIR-------EISLLKEMQHGN 62
Query: 483 IVKFYGFCSHARHSILIYEYL-----KRGSLATNLSNDAAAEEL---------------- 521
IV+ + L++EYL K + + + + +
Sbjct: 63 IVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHR 122
Query: 522 ----DISSKNVLLDLEHKA-HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YR 569
D+ +N+L+D A ++DFG+A+ ++ V T Y AP+ Y
Sbjct: 123 VLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYS 182
Query: 570 KKCDVYSFRVLALEVIKGK 588
D++S + E++ K
Sbjct: 183 TPVDIWSVGCIFAEMVNQK 201
|
Length = 294 |
| >gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4 | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 64/289 (22%), Positives = 111/289 (38%), Gaps = 80/289 (27%)
Query: 429 IGSGRHGSVYRAEL-------PSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V RAE P + +AVK +AD +E+E + I +
Sbjct: 20 LGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLAD---LISEMELMKLIGK 76
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSL----------ATNLSNDA--AAEEL------ 521
H+NI+ G C+ +I EY +G+L + + D EE
Sbjct: 77 HKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDL 136
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLK-----PDSSNW 554
D++++NVL+ ++ ++DFG+A+ + +SN
Sbjct: 137 VSCAYQVARGMEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNG 196
Query: 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRL 608
V +++AP+ Y + DV+SF +L E+ F P P + L
Sbjct: 197 RLPV---KWMAPEALFDRVYTHQSDVWSFGILMWEI--------FTLGGSPYPGIPVEEL 245
Query: 609 DEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
++L R+ P + +L +M C P RPT + + + L
Sbjct: 246 FKLLREGHRMDKP-SNCTHELYMLMR---ECWHAVPTQRPTFKQLVEAL 290
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314 |
| >gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6 | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 58/269 (21%), Positives = 104/269 (38%), Gaps = 44/269 (16%)
Query: 420 INDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ +F + IG G+ VYRA L ++ +A+KK D A Q + EI+ L ++
Sbjct: 1 LANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQ-DCVKEIDLLKQL 59
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL----------------- 521
H N++K+ ++ E G L+ + + L
Sbjct: 60 NHPNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAV 119
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD--- 567
DI NV + + D G+ +F ++ +LVGT Y++P+
Sbjct: 120 EHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIH 179
Query: 568 ---YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624
Y K D++S L E+ + P F + S+ ++++ P P P+
Sbjct: 180 ENGYNFKSDIWSLGCLLYEMAALQSP--FYGDKMNLFSLCQ-KIEQCDYP--PLPTEHYS 234
Query: 625 GKLISIMEVAFSCLDVSPESRPTMQTITQ 653
KL E+ C+ P+ RP + + Q
Sbjct: 235 EKL---RELVSMCIYPDPDQRPDIGYVHQ 260
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267 |
| >gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D+ NV+LD E ++DFG+ K D GT Y+AP+ Y K D +
Sbjct: 126 DLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWW 185
Query: 576 SFRVLALEVIKGKHP 590
++ VL E++ G+ P
Sbjct: 186 AYGVLLYEMLAGQPP 200
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323 |
| >gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 52/247 (21%), Positives = 94/247 (38%), Gaps = 71/247 (28%)
Query: 464 DQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLS--------- 513
D + +E+E + I +H+NI+ G C+ +I EY +G+L L
Sbjct: 63 DLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEY 122
Query: 514 ----NDAAAEEL---------------------------DISSKNVLLDLEHKAHVSDFG 542
E++ D++++NVL+ + ++DFG
Sbjct: 123 SYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFG 182
Query: 543 IAKFLKPDSSNWSALVGT------YRYVAPD------YRKKCDVYSFRVLALEVIKGKHP 590
+A+ D +N T +++AP+ Y + DV+SF VL E+
Sbjct: 183 LAR----DVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI------ 232
Query: 591 RGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTM 648
F P P + L ++L R+ P+ + +L +M C P RPT
Sbjct: 233 --FTLGGSPYPGIPVEELFKLLKEGHRMDKPA-NCTNELYMMMR---DCWHAIPSHRPTF 286
Query: 649 QTITQQL 655
+ + + L
Sbjct: 287 KQLVEDL 293
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304 |
| >gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 428 CIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFA-----EIEALTKIRHR 481
+G G +G VY+A + + E +A+KK ++ +++E EI L +++H
Sbjct: 6 KLGEGTYGVVYKARDKKTGEIVALKKI-------RLDNEEEGIPSTALREISLLKELKHP 58
Query: 482 NIVKFYGFCSHARHSILIYEYL 503
NIVK R L++EY
Sbjct: 59 NIVKLLDVIHTERKLYLVFEYC 80
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282 |
| >gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3 | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 59/282 (20%), Positives = 105/282 (37%), Gaps = 68/282 (24%)
Query: 429 IGSGRHGSVYRAELPS---KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
IG+G G V E+ S + VK+ S + +Q +F E + ++H N+++
Sbjct: 3 IGNGWFGKVILGEVNSGYTPAQVVVKELRV---SASVQEQMKFLEEAQPYRSLQHSNLLQ 59
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------ 521
G C+ +L+ E+ G L L + AE +
Sbjct: 60 CLGQCTEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKN 119
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAK-------FLKPDSSNWSALVGTYRYVAP--- 566
D++ +N LL + + D+G++ ++ PD W L R++AP
Sbjct: 120 NFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQL-WVPL----RWIAPELV 174
Query: 567 ----------DYRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPR 615
D K+ +V+S V E+ + G P +S + + ++ PR
Sbjct: 175 DEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYTVREQQLKLPKPR 234
Query: 616 LPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657
L P D EV C + PE RP+ + + L +
Sbjct: 235 LKLPLSD------RWYEVMQFCW-LQPEQRPSAEEVHLLLSY 269
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 26/101 (25%), Positives = 49/101 (48%)
Query: 70 SVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISL 129
+ G + L L+N G + ++I + L+ + + GN RG IP L + +L + L
Sbjct: 414 TKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL 473
Query: 130 EGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCP 170
N+ G+I E+ G +L L+++ N+ G + + G
Sbjct: 474 SYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514
|
Length = 623 |
| >gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.003
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D+ NV+LD + ++DFG+ K + S GT Y+AP+ Y D +
Sbjct: 121 DLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWW 180
Query: 576 SFRVLALEVIKGKHP 590
SF VL E++ G+ P
Sbjct: 181 SFGVLLYEMLIGQSP 195
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316 |
| >gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase, Kit | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.003
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 37/154 (24%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR----YVAPD------YRKK 571
D++++N+LL + DFG+A+ ++ DS+ + G R ++AP+ Y +
Sbjct: 239 DLAARNILLTHGRITKICDFGLARDIRNDSN--YVVKGNARLPVKWMAPESIFNCVYTFE 296
Query: 572 CDVYSFRVLALEVI---KGKHPRGFVSSILPSPSVINMRLDE---MLDPRLPPPSPDVQG 625
DV+S+ +L E+ +P +P S + E ML P P
Sbjct: 297 SDVWSYGILLWEIFSLGSSPYPG------MPVDSKFYKMIKEGYRMLSPECAPS------ 344
Query: 626 KLISIMEVAFSCLDVSPESRPT----MQTITQQL 655
++ IM+ SC D P RPT +Q I QQL
Sbjct: 345 EMYDIMK---SCWDADPLKRPTFKQIVQLIEQQL 375
|
Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. Kit signaling is involved in major cellular functions including cell survival, proliferation, differentiation, adhesion, and chemotaxis. Mutations in Kit, which result in constitutive ligand-independent activation, are found in human cancers such as gastrointestinal stromal tumor (GIST) and testicular germ cell tumor (TGCT). The aberrant expression of Kit and/or SCF is associated with other tumor types such as systemic mastocytosis and cancers of the breast, neurons, lung, prostate, colon, and rectum. Although the structure of the human Kit catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 375 |
| >gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.003
Identities = 59/269 (21%), Positives = 112/269 (41%), Gaps = 60/269 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFL----AVKKFNSPL-PSDQIADQKEFFAEIEALTKIRHRN 482
+GSG G+VY+ +P E + A+K N P + EF E + + H +
Sbjct: 15 LGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANV----EFMDEALIMASMDHPH 70
Query: 483 IVKFYGFCSHAR---------HSILI-YEYLKRGSLATNLSNDAAAE------------- 519
+V+ G C H L+ Y + + ++ + L + +
Sbjct: 71 LVRLLGVCLSPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRL 130
Query: 520 -ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD---YRK--- 570
D++++NVL+ + ++DFG+A+ L+ D ++A G +++A + YRK
Sbjct: 131 VHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTH 190
Query: 571 KCDVYSFRVLALEVIK--GKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGK 626
+ DV+S+ V E++ GK G + +P ++L+ RLP P
Sbjct: 191 QSDVWSYGVTIWELMTFGGKPYDGIPTREIP----------DLLEKGERLPQPPICT--- 237
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQL 655
I + V C + +SRP + + +
Sbjct: 238 -IDVYMVMVKCWMIDADSRPKFKELAAEF 265
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303 |
| >gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.003
Identities = 48/207 (23%), Positives = 76/207 (36%), Gaps = 37/207 (17%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
+DF+ IG G G V ++ E + K + + A+ F E L
Sbjct: 1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDC 60
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSLATNLSN--DAAAEEL----------------- 521
+ I + + L+ +Y G L T LS D E++
Sbjct: 61 QWITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQ 120
Query: 522 ------DISSKNVLLDLEHKAHVSDFG-IAKFLKPDSSNWSALVGTYRYVAPD------- 567
DI NVLLD+ ++DFG K + + S VGT Y++P+
Sbjct: 121 LHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMED 180
Query: 568 ----YRKKCDVYSFRVLALEVIKGKHP 590
Y +CD +S V E++ G+ P
Sbjct: 181 GMGKYGPECDWWSLGVCMYEMLYGETP 207
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331 |
| >gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.003
Identities = 56/282 (19%), Positives = 104/282 (36%), Gaps = 72/282 (25%)
Query: 429 IGSGRHGSVYRAE---LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
IG+G G V E SK + VK+ + S +Q F E++ ++ H N+++
Sbjct: 3 IGNGWFGKVLLGEAHRGMSKARVVVKELRA---SATPDEQLLFLQEVQPYRELNHPNVLQ 59
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISSKNVLLDLE----------HK 535
G C + +L+ E+ G L L ++ + K+VL + H+
Sbjct: 60 CLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQM-AQKDVLQRMACEVASGLLWLHQ 118
Query: 536 AH--------------------VSDFGIA------KFLKPDSSNWSALVGTYRYVAP--- 566
A + D+G+A + + L R++AP
Sbjct: 119 ADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPL----RWLAPELV 174
Query: 567 ----------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRL--DEMLDP 614
D KK +++S V E+ F ++ P P + + ++ + +
Sbjct: 175 EIRGQDLLPKDQTKKSNIWSLGVTMWEL--------FTAADQPYPDLSDEQVLKQVVREQ 226
Query: 615 RLPPPSPDVQGKLIS-IMEVAFSCLDVSPESRPTMQTITQQL 655
+ P P + K EV C + PE+RPT + + + L
Sbjct: 227 DIKLPKPQLDLKYSDRWYEVMQFCW-LDPETRPTAEEVHELL 267
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269 |
| >gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVY 575
D+ +N+LLD + + DFG+ K D + GT Y+AP+ Y K D +
Sbjct: 118 DLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTKAVDWW 177
Query: 576 SFRVLALEVIKGKHP 590
+ VL E++ G P
Sbjct: 178 TLGVLLYEMLTGLPP 192
|
Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 667 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 100.0 | |
| KOG0581 | 364 | consensus Mitogen-activated protein kinase kinase | 100.0 | |
| KOG0192 | 362 | consensus Tyrosine kinase specific for activated ( | 100.0 | |
| KOG0615 | 475 | consensus Serine/threonine protein kinase Chk2 and | 100.0 | |
| KOG0197 | 468 | consensus Tyrosine kinases [Signal transduction me | 100.0 | |
| KOG0598 | 357 | consensus Ribosomal protein S6 kinase and related | 100.0 | |
| KOG0575 | 592 | consensus Polo-like serine/threonine protein kinas | 100.0 | |
| KOG0591 | 375 | consensus NIMA (never in mitosis)-related G2-speci | 100.0 | |
| KOG0595 | 429 | consensus Serine/threonine-protein kinase involved | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG0201 | 467 | consensus Serine/threonine protein kinase [Signal | 100.0 | |
| KOG1026 | 774 | consensus Nerve growth factor receptor TRKA and re | 100.0 | |
| KOG0582 | 516 | consensus Ste20-like serine/threonine protein kina | 100.0 | |
| KOG0578 | 550 | consensus p21-activated serine/threonine protein k | 100.0 | |
| KOG0605 | 550 | consensus NDR and related serine/threonine kinases | 100.0 | |
| KOG0198 | 313 | consensus MEKK and related serine/threonine protei | 100.0 | |
| KOG0694 | 694 | consensus Serine/threonine protein kinase [Signal | 100.0 | |
| KOG0597 | 808 | consensus Serine-threonine protein kinase FUSED [G | 100.0 | |
| KOG4721 | 904 | consensus Serine/threonine protein kinase, contain | 100.0 | |
| KOG0592 | 604 | consensus 3-phosphoinositide-dependent protein kin | 100.0 | |
| KOG0593 | 396 | consensus Predicted protein kinase KKIAMRE [Genera | 100.0 | |
| KOG0574 | 502 | consensus STE20-like serine/threonine kinase MST [ | 100.0 | |
| PHA02988 | 283 | hypothetical protein; Provisional | 100.0 | |
| KOG1095 | 1025 | consensus Protein tyrosine kinase [Signal transduc | 100.0 | |
| KOG0616 | 355 | consensus cAMP-dependent protein kinase catalytic | 100.0 | |
| KOG0580 | 281 | consensus Serine/threonine protein kinase [Cell cy | 100.0 | |
| KOG0583 | 370 | consensus Serine/threonine protein kinase [Signal | 100.0 | |
| KOG0196 | 996 | consensus Tyrosine kinase, EPH (ephrin) receptor f | 100.0 | |
| KOG0193 | 678 | consensus Serine/threonine protein kinase RAF [Sig | 100.0 | |
| KOG0194 | 474 | consensus Protein tyrosine kinase [Signal transduc | 100.0 | |
| cd05102 | 338 | PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi | 100.0 | |
| KOG0599 | 411 | consensus Phosphorylase kinase gamma subunit [Carb | 100.0 | |
| KOG4278 | 1157 | consensus Protein tyrosine kinase [Signal transduc | 100.0 | |
| KOG0600 | 560 | consensus Cdc2-related protein kinase [Cell cycle | 100.0 | |
| PLN00034 | 353 | mitogen-activated protein kinase kinase; Provision | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| cd06649 | 331 | PKc_MEK2 Catalytic domain of the dual-specificity | 100.0 | |
| cd05631 | 285 | STKc_GRK4 Catalytic domain of the Protein Serine/T | 100.0 | |
| cd05571 | 323 | STKc_PKB Catalytic domain of the Protein Serine/Th | 100.0 | |
| KOG1094 | 807 | consensus Discoidin domain receptor DDR1 [Signal t | 100.0 | |
| KOG0588 | 786 | consensus Serine/threonine protein kinase [Cell cy | 100.0 | |
| cd05584 | 323 | STKc_p70S6K Catalytic domain of the Protein Serine | 100.0 | |
| cd05600 | 333 | STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- | 100.0 | |
| cd05096 | 304 | PTKc_DDR1 Catalytic domain of the Protein Tyrosine | 100.0 | |
| PTZ00263 | 329 | protein kinase A catalytic subunit; Provisional | 100.0 | |
| KOG0589 | 426 | consensus Serine/threonine protein kinase [General | 100.0 | |
| cd05104 | 375 | PTKc_Kit Catalytic domain of the Protein Tyrosine | 100.0 | |
| cd05612 | 291 | STKc_PRKX_like Catalytic domain of PRKX-like Prote | 100.0 | |
| PTZ00426 | 340 | cAMP-dependent protein kinase catalytic subunit; P | 100.0 | |
| KOG0577 | 948 | consensus Serine/threonine protein kinase [Signal | 99.98 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 99.98 | |
| cd05585 | 312 | STKc_YPK1_like Catalytic domain of Yeast Protein K | 99.98 | |
| cd05626 | 381 | STKc_LATS2 Catalytic domain of the Protein Serine/ | 99.98 | |
| cd05593 | 328 | STKc_PKB_gamma Catalytic domain of the Protein Ser | 99.98 | |
| cd06650 | 333 | PKc_MEK1 Catalytic domain of the dual-specificity | 99.98 | |
| cd05614 | 332 | STKc_MSK2_N N-terminal catalytic domain of the Pro | 99.98 | |
| cd07869 | 303 | STKc_PFTAIRE1 Catalytic domain of the Serine/Threo | 99.98 | |
| KOG0611 | 668 | consensus Predicted serine/threonine protein kinas | 99.98 | |
| cd05595 | 323 | STKc_PKB_beta Catalytic domain of the Protein Seri | 99.98 | |
| KOG0585 | 576 | consensus Ca2+/calmodulin-dependent protein kinase | 99.98 | |
| cd05596 | 370 | STKc_ROCK Catalytic domain of the Protein Serine/T | 99.98 | |
| cd05106 | 374 | PTKc_CSF-1R Catalytic domain of the Protein Tyrosi | 99.98 | |
| cd05114 | 256 | PTKc_Tec_Rlk Catalytic domain of the Protein Tyros | 99.98 | |
| cd07871 | 288 | STKc_PCTAIRE3 Catalytic domain of the Serine/Threo | 99.98 | |
| KOG4257 | 974 | consensus Focal adhesion tyrosine kinase FAK, cont | 99.98 | |
| cd05628 | 363 | STKc_NDR1 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd05618 | 329 | STKc_aPKC_iota Catalytic domain of the Protein Ser | 99.97 | |
| cd05589 | 324 | STKc_PKN Catalytic domain of the Protein Serine/Th | 99.97 | |
| cd05608 | 280 | STKc_GRK1 Catalytic domain of the Protein Serine/T | 99.97 | |
| KOG0659 | 318 | consensus Cdk activating kinase (CAK)/RNA polymera | 99.97 | |
| cd05588 | 329 | STKc_aPKC Catalytic domain of the Protein Serine/T | 99.97 | |
| cd07848 | 287 | STKc_CDKL5 Catalytic domain of the Serine/Threonin | 99.97 | |
| cd05105 | 400 | PTKc_PDGFR_alpha Catalytic domain of the Protein T | 99.97 | |
| cd06646 | 267 | STKc_MAP4K5 Catalytic domain of the Protein Serine | 99.97 | |
| KOG0661 | 538 | consensus MAPK related serine/threonine protein ki | 99.97 | |
| cd07859 | 338 | STKc_TDY_MAPK_plant Catalytic domain of the Serine | 99.97 | |
| cd05048 | 283 | PTKc_Ror Catalytic Domain of the Protein Tyrosine | 99.97 | |
| PTZ00267 | 478 | NIMA-related protein kinase; Provisional | 99.97 | |
| cd05064 | 266 | PTKc_EphR_A10 Catalytic domain of the Protein Tyro | 99.97 | |
| cd05590 | 320 | STKc_nPKC_eta Catalytic domain of the Protein Seri | 99.97 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 99.97 | |
| PHA03212 | 391 | serine/threonine kinase US3; Provisional | 99.97 | |
| cd05594 | 325 | STKc_PKB_alpha Catalytic domain of the Protein Ser | 99.97 | |
| PF07714 | 259 | Pkinase_Tyr: Protein tyrosine kinase Protein kinas | 99.97 | |
| cd05591 | 321 | STKc_nPKC_epsilon Catalytic domain of the Protein | 99.97 | |
| cd05599 | 364 | STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel | 99.97 | |
| cd05625 | 382 | STKc_LATS1 Catalytic domain of the Protein Serine/ | 99.97 | |
| cd05575 | 323 | STKc_SGK Catalytic domain of the Protein Serine/Th | 99.97 | |
| cd05587 | 324 | STKc_cPKC Catalytic domain of the Protein Serine/T | 99.97 | |
| cd05592 | 316 | STKc_nPKC_theta_delta Catalytic domain of the Prot | 99.97 | |
| KOG0032 | 382 | consensus Ca2+/calmodulin-dependent protein kinase | 99.97 | |
| cd08529 | 256 | STKc_FA2-like Catalytic domain of the Protein Seri | 99.97 | |
| cd05573 | 350 | STKc_ROCK_NDR_like Catalytic domain of ROCK- and N | 99.97 | |
| cd05616 | 323 | STKc_cPKC_beta Catalytic domain of the Protein Ser | 99.97 | |
| cd05621 | 370 | STKc_ROCK2 Catalytic domain of the Protein Serine/ | 99.97 | |
| cd06624 | 268 | STKc_ASK Catalytic domain of the Protein Serine/Th | 99.97 | |
| cd06638 | 286 | STKc_myosinIIIA Catalytic domain of the Protein Se | 99.97 | |
| cd08228 | 267 | STKc_Nek6 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd05090 | 283 | PTKc_Ror1 Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05087 | 269 | PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein | 99.97 | |
| cd05086 | 268 | PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi | 99.97 | |
| cd05072 | 261 | PTKc_Lyn Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05605 | 285 | STKc_GRK4_like Catalytic domain of G protein-coupl | 99.97 | |
| PTZ00283 | 496 | serine/threonine protein kinase; Provisional | 99.97 | |
| cd05570 | 318 | STKc_PKC Catalytic domain of the Protein Serine/Th | 99.97 | |
| KOG0596 | 677 | consensus Dual specificity; serine/threonine and t | 99.97 | |
| cd05619 | 316 | STKc_nPKC_theta Catalytic domain of the Protein Se | 99.97 | |
| cd05582 | 318 | STKc_RSK_N N-terminal catalytic domain of the Prot | 99.97 | |
| cd05617 | 327 | STKc_aPKC_zeta Catalytic domain of the Protein Ser | 99.97 | |
| cd05108 | 316 | PTKc_EGFR Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd06654 | 296 | STKc_PAK1 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd05033 | 266 | PTKc_EphR Catalytic domain of Ephrin Receptor Prot | 99.97 | |
| KOG0663 | 419 | consensus Protein kinase PITSLRE and related kinas | 99.97 | |
| cd05059 | 256 | PTKc_Tec_like Catalytic domain of Tec-like Protein | 99.97 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.97 | |
| cd05107 | 401 | PTKc_PDGFR_beta Catalytic domain of the Protein Ty | 99.97 | |
| cd05598 | 376 | STKc_LATS Catalytic domain of the Protein Serine/T | 99.97 | |
| cd05049 | 280 | PTKc_Trk Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05603 | 321 | STKc_SGK2 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd06637 | 272 | STKc_TNIK Catalytic domain of the Protein Serine/T | 99.97 | |
| KOG0983 | 391 | consensus Mitogen-activated protein kinase (MAPK) | 99.97 | |
| cd06625 | 263 | STKc_MEKK3_like Catalytic domain of MAP/ERK kinase | 99.97 | |
| cd05113 | 256 | PTKc_Btk_Bmx Catalytic domain of the Protein Tyros | 99.97 | |
| cd05620 | 316 | STKc_nPKC_delta Catalytic domain of the Protein Se | 99.97 | |
| cd07862 | 290 | STKc_CDK6 Catalytic domain of the Serine/Threonine | 99.97 | |
| cd05629 | 377 | STKc_NDR_like_fungal Catalytic domain of Fungal Nu | 99.97 | |
| cd06612 | 256 | STKc_MST1_2 Catalytic domain of the Protein Serine | 99.97 | |
| KOG0610 | 459 | consensus Putative serine/threonine protein kinase | 99.97 | |
| cd05622 | 371 | STKc_ROCK1 Catalytic domain of the Protein Serine/ | 99.97 | |
| cd05148 | 261 | PTKc_Srm_Brk Catalytic domain of the Protein Tyros | 99.97 | |
| cd06609 | 274 | STKc_MST3_like Catalytic domain of Mammalian Ste20 | 99.97 | |
| cd06640 | 277 | STKc_MST4 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd06655 | 296 | STKc_PAK2 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd06631 | 265 | STKc_YSK4 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd05607 | 277 | STKc_GRK7 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd05093 | 288 | PTKc_TrkB Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05601 | 330 | STKc_CRIK Catalytic domain of the Protein Serine/T | 99.97 | |
| cd08224 | 267 | STKc_Nek6_Nek7 Catalytic domain of the Protein Ser | 99.97 | |
| cd06642 | 277 | STKc_STK25-YSK1 Catalytic domain of the Protein Se | 99.97 | |
| cd06656 | 297 | STKc_PAK3 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd06615 | 308 | PKc_MEK Catalytic domain of the dual-specificity P | 99.97 | |
| cd05602 | 325 | STKc_SGK1 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd06619 | 279 | PKc_MKK5 Catalytic domain of the dual-specificity | 99.97 | |
| cd05062 | 277 | PTKc_IGF-1R Catalytic domain of the Protein Tyrosi | 99.97 | |
| cd05068 | 261 | PTKc_Frk_like Catalytic domain of Fyn-related kina | 99.97 | |
| cd06639 | 291 | STKc_myosinIIIB Catalytic domain of the Protein Se | 99.97 | |
| cd05089 | 297 | PTKc_Tie1 Catalytic domain of the Protein Tyrosine | 99.97 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 99.97 | |
| KOG1006 | 361 | consensus Mitogen-activated protein kinase (MAPK) | 99.97 | |
| cd05054 | 337 | PTKc_VEGFR Catalytic domain of the Protein Tyrosin | 99.97 | |
| cd05604 | 325 | STKc_SGK3 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd06644 | 292 | STKc_STK10_LOK Catalytic domain of the Protein Ser | 99.97 | |
| cd05111 | 279 | PTK_HER3 Pseudokinase domain of the Protein Tyrosi | 99.97 | |
| KOG0033 | 355 | consensus Ca2+/calmodulin-dependent protein kinase | 99.97 | |
| cd05627 | 360 | STKc_NDR2 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd08229 | 267 | STKc_Nek7 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd05042 | 269 | PTKc_Aatyk Catalytic domain of the Protein Tyrosin | 99.97 | |
| cd05085 | 250 | PTKc_Fer Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd07872 | 309 | STKc_PCTAIRE2 Catalytic domain of the Serine/Threo | 99.97 | |
| cd05094 | 291 | PTKc_TrkC Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05116 | 257 | PTKc_Syk Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05084 | 252 | PTKc_Fes Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05052 | 263 | PTKc_Abl Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05051 | 296 | PTKc_DDR Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05045 | 290 | PTKc_RET Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd06641 | 277 | STKc_MST3 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd06611 | 280 | STKc_SLK_like Catalytic domain of Ste20-like kinas | 99.97 | |
| cd06643 | 282 | STKc_SLK Catalytic domain of the Protein Serine/Th | 99.97 | |
| cd05615 | 323 | STKc_cPKC_alpha Catalytic domain of the Protein Se | 99.97 | |
| KOG0199 | 1039 | consensus ACK and related non-receptor tyrosine ki | 99.97 | |
| cd06610 | 267 | STKc_OSR1_SPAK Catalytic domain of the Protein Ser | 99.97 | |
| cd05095 | 296 | PTKc_DDR2 Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd07853 | 372 | STKc_NLK Catalytic domain of the Serine/Threonine | 99.97 | |
| cd08219 | 255 | STKc_Nek3 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd07861 | 285 | STKc_CDK1_euk Catalytic domain of the Serine/Threo | 99.97 | |
| cd05115 | 257 | PTKc_Zap-70 Catalytic domain of the Protein Tyrosi | 99.97 | |
| cd07873 | 301 | STKc_PCTAIRE1 Catalytic domain of the Serine/Threo | 99.97 | |
| cd06621 | 287 | PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek | 99.97 | |
| cd05097 | 295 | PTKc_DDR_like Catalytic domain of Discoidin Domain | 99.97 | |
| cd05067 | 260 | PTKc_Lck_Blk Catalytic domain of the Protein Tyros | 99.97 | |
| cd05035 | 273 | PTKc_Axl_like Catalytic Domain of Axl-like Protein | 99.97 | |
| cd05080 | 283 | PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the | 99.97 | |
| cd05630 | 285 | STKc_GRK6 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd06917 | 277 | STKc_NAK1_like Catalytic domain of Fungal Nak1-lik | 99.97 | |
| cd05088 | 303 | PTKc_Tie2 Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd08221 | 256 | STKc_Nek9 Catalytic domain of the Protein Serine/T | 99.97 | |
| cd05063 | 268 | PTKc_EphR_A2 Catalytic domain of the Protein Tyros | 99.97 | |
| cd06645 | 267 | STKc_MAP4K3 Catalytic domain of the Protein Serine | 99.97 | |
| cd05103 | 343 | PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi | 99.97 | |
| cd07876 | 359 | STKc_JNK2 Catalytic domain of the Serine/Threonine | 99.97 | |
| PTZ00036 | 440 | glycogen synthase kinase; Provisional | 99.97 | |
| cd05091 | 283 | PTKc_Ror2 Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05032 | 277 | PTKc_InsR_like Catalytic domain of Insulin Recepto | 99.97 | |
| cd05075 | 272 | PTKc_Axl Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05066 | 267 | PTKc_EphR_A Catalytic domain of the Protein Tyrosi | 99.97 | |
| cd06622 | 286 | PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS | 99.97 | |
| cd06636 | 282 | STKc_MAP4K4_6 Catalytic domain of the Protein Seri | 99.97 | |
| cd05053 | 293 | PTKc_FGFR Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05070 | 260 | PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros | 99.97 | |
| cd06605 | 265 | PKc_MAPKK Catalytic domain of the dual-specificity | 99.97 | |
| cd06628 | 267 | STKc_MAPKKK_Byr2_like Catalytic domain of fungal B | 99.97 | |
| cd05055 | 302 | PTKc_PDGFR Catalytic domain of the Protein Tyrosin | 99.97 | |
| cd06651 | 266 | STKc_MEKK3 Catalytic domain of the Protein Serine/ | 99.97 | |
| cd05039 | 256 | PTKc_Csk_like Catalytic domain of C-terminal Src k | 99.97 | |
| cd05071 | 262 | PTKc_Src Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd06647 | 293 | STKc_PAK_I Catalytic domain of the Protein Serine/ | 99.97 | |
| cd06620 | 284 | PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr | 99.97 | |
| cd05036 | 277 | PTKc_ALK_LTK Catalytic domain of the Protein Tyros | 99.97 | |
| cd06658 | 292 | STKc_PAK5 Catalytic domain of the Protein Serine/T | 99.97 | |
| KOG0660 | 359 | consensus Mitogen-activated protein kinase [Signal | 99.97 | |
| cd05092 | 280 | PTKc_TrkA Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05112 | 256 | PTKc_Itk Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05043 | 280 | PTK_Ryk Pseudokinase domain of Ryk (Receptor relat | 99.97 | |
| cd07874 | 355 | STKc_JNK3 Catalytic domain of the Serine/Threonine | 99.97 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 99.97 | |
| cd07846 | 286 | STKc_CDKL2_3 Catalytic domain of the Serine/Threon | 99.97 | |
| cd05597 | 331 | STKc_DMPK_like Catalytic domain of Myotonic Dystro | 99.97 | |
| cd05101 | 304 | PTKc_FGFR2 Catalytic domain of the Protein Tyrosin | 99.97 | |
| cd05061 | 288 | PTKc_InsR Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05060 | 257 | PTKc_Syk_like Catalytic domain of Spleen Tyrosine | 99.97 | |
| cd05081 | 284 | PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of | 99.97 | |
| cd05050 | 288 | PTKc_Musk Catalytic domain of the Protein Tyrosine | 99.97 | |
| cd05098 | 307 | PTKc_FGFR1 Catalytic domain of the Protein Tyrosin | 99.97 | |
| KOG0658 | 364 | consensus Glycogen synthase kinase-3 [Carbohydrate | 99.97 | |
| cd07868 | 317 | STKc_CDK8 Catalytic domain of the Serine/Threonine | 99.97 | |
| cd06613 | 262 | STKc_MAP4K3_like Catalytic domain of Mitogen-activ | 99.97 | |
| cd05099 | 314 | PTKc_FGFR4 Catalytic domain of the Protein Tyrosin | 99.96 | |
| cd07847 | 286 | STKc_CDKL1_4 Catalytic domain of the Serine/Threon | 99.96 | |
| cd06659 | 297 | STKc_PAK6 Catalytic domain of the Protein Serine/T | 99.96 | |
| cd08218 | 256 | STKc_Nek1 Catalytic domain of the Protein Serine/T | 99.96 | |
| cd05069 | 260 | PTKc_Yes Catalytic domain of the Protein Tyrosine | 99.96 | |
| cd08223 | 257 | STKc_Nek4 Catalytic domain of the Protein Serine/T | 99.96 | |
| cd06623 | 264 | PKc_MAPKK_plant_like Catalytic domain of Plant dua | 99.96 | |
| PF00069 | 260 | Pkinase: Protein kinase domain Protein kinase; unc | 99.96 | |
| cd05623 | 332 | STKc_MRCK_alpha Catalytic domain of the Protein Se | 99.96 | |
| cd05109 | 279 | PTKc_HER2 Catalytic domain of the Protein Tyrosine | 99.96 | |
| cd06629 | 272 | STKc_MAPKKK_Bck1_like Catalytic domain of fungal B | 99.96 | |
| cd05632 | 285 | STKc_GRK5 Catalytic domain of the Protein Serine/T | 99.96 | |
| cd06608 | 275 | STKc_myosinIII_like Catalytic domain of Class III | 99.96 | |
| cd08227 | 327 | PK_STRAD_alpha Pseudokinase domain of STE20-relate | 99.96 | |
| cd05047 | 270 | PTKc_Tie Catalytic domain of Tie Protein Tyrosine | 99.96 | |
| cd05040 | 257 | PTKc_Ack_like Catalytic domain of the Protein Tyro | 99.96 | |
| KOG4645 | 1509 | consensus MAPKKK (MAP kinase kinase kinase) SSK2 a | 99.96 | |
| cd05041 | 251 | PTKc_Fes_like Catalytic domain of Fes-like Protein | 99.96 | |
| cd05082 | 256 | PTKc_Csk Catalytic domain of the Protein Tyrosine | 99.96 | |
| cd07870 | 291 | STKc_PFTAIRE2 Catalytic domain of the Serine/Threo | 99.96 | |
| cd06652 | 265 | STKc_MEKK2 Catalytic domain of the Protein Serine/ | 99.96 | |
| cd07875 | 364 | STKc_JNK1 Catalytic domain of the Serine/Threonine | 99.96 | |
| cd08528 | 269 | STKc_Nek10 Catalytic domain of the Protein Serine/ | 99.96 | |
| cd00192 | 262 | PTKc Catalytic domain of Protein Tyrosine Kinases. | 99.96 | |
| cd07867 | 317 | STKc_CDC2L6 Catalytic domain of Serine/Threonine K | 99.96 | |
| cd05076 | 274 | PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th | 99.96 | |
| cd05624 | 331 | STKc_MRCK_beta Catalytic domain of the Protein Ser | 99.96 | |
| cd06648 | 285 | STKc_PAK_II Catalytic domain of the Protein Serine | 99.96 | |
| cd07860 | 284 | STKc_CDK2_3 Catalytic domain of the Serine/Threoni | 99.96 | |
| cd05058 | 262 | PTKc_Met_Ron Catalytic domain of the Protein Tyros | 99.96 | |
| cd05065 | 269 | PTKc_EphR_B Catalytic domain of the Protein Tyrosi | 99.96 | |
| cd06632 | 258 | STKc_MEKK1_plant Catalytic domain of the Protein S | 99.96 | |
| cd06626 | 264 | STKc_MEKK4 Catalytic domain of the Protein Serine/ | 99.96 | |
| cd07844 | 291 | STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like | 99.96 | |
| cd08217 | 265 | STKc_Nek2 Catalytic domain of the Protein Serine/T | 99.96 | |
| cd05038 | 284 | PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P | 99.96 | |
| cd05034 | 261 | PTKc_Src_like Catalytic domain of Src kinase-like | 99.96 | |
| cd06614 | 286 | STKc_PAK Catalytic domain of the Protein Serine/Th | 99.96 | |
| cd07839 | 284 | STKc_CDK5 Catalytic domain of the Serine/Threonine | 99.96 | |
| cd05079 | 284 | PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the | 99.96 | |
| cd05077 | 262 | PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th | 99.96 | |
| cd05586 | 330 | STKc_Sck1_like Catalytic domain of Suppressor of l | 99.96 | |
| PHA03211 | 461 | serine/threonine kinase US3; Provisional | 99.96 | |
| cd05572 | 262 | STKc_cGK_PKG Catalytic domain of the Protein Serin | 99.96 | |
| KOG2052 | 513 | consensus Activin A type IB receptor, serine/threo | 99.96 | |
| cd06607 | 307 | STKc_TAO Catalytic domain of the Protein Serine/Th | 99.96 | |
| cd05580 | 290 | STKc_PKA Catalytic domain of the Protein Serine/Th | 99.96 | |
| cd07878 | 343 | STKc_p38beta_MAPK11 Catalytic domain of the Serine | 99.96 | |
| cd06657 | 292 | STKc_PAK4 Catalytic domain of the Protein Serine/T | 99.96 | |
| cd07841 | 298 | STKc_CDK7 Catalytic domain of the Serine/Threonine | 99.96 | |
| cd05574 | 316 | STKc_phototropin_like Catalytic domain of Phototro | 99.96 | |
| cd07863 | 288 | STKc_CDK4 Catalytic domain of the Serine/Threonine | 99.96 | |
| cd06616 | 288 | PKc_MKK4 Catalytic domain of the dual-specificity | 99.96 | |
| cd05073 | 260 | PTKc_Hck Catalytic domain of the Protein Tyrosine | 99.96 | |
| KOG0690 | 516 | consensus Serine/threonine protein kinase [Signal | 99.96 | |
| cd08225 | 257 | STKc_Nek5 Catalytic domain of the Protein Serine/T | 99.96 | |
| cd05100 | 334 | PTKc_FGFR3 Catalytic domain of the Protein Tyrosin | 99.96 | |
| cd05057 | 279 | PTKc_EGFR_like Catalytic domain of Epidermal Growt | 99.96 | |
| cd05056 | 270 | PTKc_FAK Catalytic domain of the Protein Tyrosine | 99.96 | |
| cd06630 | 268 | STKc_MEKK1 Catalytic domain of the Protein Serine/ | 99.96 | |
| cd05609 | 305 | STKc_MAST Catalytic domain of the Protein Serine/T | 99.96 | |
| cd07833 | 288 | STKc_CDKL Catalytic domain of Cyclin-Dependent pro | 99.96 | |
| cd07835 | 283 | STKc_CDK1_like Catalytic domain of Cyclin-Dependen | 99.96 | |
| cd06617 | 283 | PKc_MKK3_6 Catalytic domain of the dual-specificit | 99.96 | |
| PHA03207 | 392 | serine/threonine kinase US3; Provisional | 99.96 | |
| KOG4717 | 864 | consensus Serine/threonine protein kinase [Signal | 99.96 | |
| cd07843 | 293 | STKc_CDC2L1 Catalytic domain of the Serine/Threoni | 99.96 | |
| KOG3653 | 534 | consensus Transforming growth factor beta/activin | 99.96 | |
| cd05110 | 303 | PTKc_HER4 Catalytic domain of the Protein Tyrosine | 99.96 | |
| PLN00009 | 294 | cyclin-dependent kinase A; Provisional | 99.96 | |
| cd05044 | 269 | PTKc_c-ros Catalytic domain of the Protein Tyrosin | 99.96 | |
| cd05613 | 290 | STKc_MSK1_N N-terminal catalytic domain of the Pro | 99.96 | |
| cd07836 | 284 | STKc_Pho85 Catalytic domain of the Serine/Threonin | 99.96 | |
| cd05633 | 279 | STKc_GRK3 Catalytic domain of the Protein Serine/T | 99.96 | |
| cd08220 | 256 | STKc_Nek8 Catalytic domain of the Protein Serine/T | 99.96 | |
| KOG0587 | 953 | consensus Traf2- and Nck-interacting kinase and re | 99.96 | |
| KOG0594 | 323 | consensus Protein kinase PCTAIRE and related kinas | 99.96 | |
| cd05078 | 258 | PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain | 99.96 | |
| PTZ00284 | 467 | protein kinase; Provisional | 99.96 | |
| PHA03209 | 357 | serine/threonine kinase US3; Provisional | 99.96 | |
| cd06635 | 317 | STKc_TAO1 Catalytic domain of the Protein Serine/T | 99.96 | |
| cd05046 | 275 | PTK_CCK4 Pseudokinase domain of the Protein Tyrosi | 99.96 | |
| cd05083 | 254 | PTKc_Chk Catalytic domain of the Protein Tyrosine | 99.96 | |
| cd07832 | 286 | STKc_CCRK Catalytic domain of the Serine/Threonine | 99.96 | |
| cd05122 | 253 | PKc_STE Catalytic domain of STE family Protein Kin | 99.96 | |
| cd05037 | 259 | PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the | 99.96 | |
| smart00219 | 258 | TyrKc Tyrosine kinase, catalytic domain. Phosphotr | 99.96 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.96 | |
| cd07845 | 309 | STKc_CDK10 Catalytic domain of the Serine/Threonin | 99.96 | |
| cd05578 | 258 | STKc_Yank1 Catalytic domain of the Protein Serine/ | 99.96 | |
| cd06606 | 260 | STKc_MAPKKK Catalytic domain of the Protein Serine | 99.96 | |
| cd05577 | 277 | STKc_GRK Catalytic domain of the Protein Serine/Th | 99.96 | |
| cd05074 | 273 | PTKc_Tyro3 Catalytic domain of the Protein Tyrosin | 99.96 | |
| cd06627 | 254 | STKc_Cdc7_like Catalytic domain of Cell division c | 99.96 | |
| KOG2345 | 302 | consensus Serine/threonine protein kinase/TGF-beta | 99.95 | |
| cd07840 | 287 | STKc_CDK9_like Catalytic domain of Cyclin-Dependen | 99.95 | |
| KOG1989 | 738 | consensus ARK protein kinase family [Signal transd | 99.95 | |
| cd05611 | 260 | STKc_Rim15_like Catalytic domain of fungal Rim15-l | 99.95 | |
| cd07852 | 337 | STKc_MAPK15 Catalytic domain of the Serine/Threoni | 99.95 | |
| cd07842 | 316 | STKc_CDK8_like Catalytic domain of Cyclin-Dependen | 99.95 | |
| PHA03210 | 501 | serine/threonine kinase US3; Provisional | 99.95 | |
| cd07849 | 336 | STKc_ERK1_2_like Catalytic domain of Extracellular | 99.95 | |
| cd07837 | 295 | STKc_CdkB_plant Catalytic domain of the Serine/Thr | 99.95 | |
| cd08215 | 258 | STKc_Nek Catalytic domain of the Protein Serine/Th | 99.95 | |
| KOG0584 | 632 | consensus Serine/threonine protein kinase [General | 99.95 | |
| KOG0586 | 596 | consensus Serine/threonine protein kinase [General | 99.95 | |
| cd07858 | 337 | STKc_TEY_MAPK_plant Catalytic domain of the Serine | 99.95 | |
| cd05606 | 278 | STKc_beta_ARK Catalytic domain of the Protein Seri | 99.95 | |
| cd07850 | 353 | STKc_JNK Catalytic domain of the Serine/Threonine | 99.95 | |
| KOG0200 | 609 | consensus Fibroblast/platelet-derived growth facto | 99.95 | |
| cd07865 | 310 | STKc_CDK9 Catalytic domain of the Serine/Threonine | 99.95 | |
| cd07830 | 283 | STKc_MAK_like Catalytic domain of Male germ cell-A | 99.95 | |
| cd07879 | 342 | STKc_p38delta_MAPK13 Catalytic domain of the Serin | 99.95 | |
| cd08216 | 314 | PK_STRAD Pseudokinase domain of STE20-related kina | 99.95 | |
| cd06653 | 264 | STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina | 99.95 | |
| cd07864 | 302 | STKc_CDK12 Catalytic domain of the Serine/Threonin | 99.95 | |
| cd07831 | 282 | STKc_MOK Catalytic domain of the Serine/Threonine | 99.95 | |
| KOG0986 | 591 | consensus G protein-coupled receptor kinase [Signa | 99.95 | |
| cd06634 | 308 | STKc_TAO2 Catalytic domain of the Protein Serine/T | 99.95 | |
| cd05583 | 288 | STKc_MSK_N N-terminal catalytic domain of the Prot | 99.95 | |
| KOG1025 | 1177 | consensus Epidermal growth factor receptor EGFR an | 99.95 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 99.95 | |
| cd05579 | 265 | STKc_MAST_like Catalytic domain of Microtubule-ass | 99.95 | |
| cd06618 | 296 | PKc_MKK7 Catalytic domain of the dual-specificity | 99.95 | |
| PTZ00024 | 335 | cyclin-dependent protein kinase; Provisional | 99.95 | |
| cd08226 | 328 | PK_STRAD_beta Pseudokinase domain of STE20-related | 99.95 | |
| cd07855 | 334 | STKc_ERK5 Catalytic domain of the Serine/Threonine | 99.95 | |
| KOG4250 | 732 | consensus TANK binding protein kinase TBK1 [Signal | 99.95 | |
| PHA03390 | 267 | pk1 serine/threonine-protein kinase 1; Provisional | 99.95 | |
| cd07856 | 328 | STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre | 99.95 | |
| cd07838 | 287 | STKc_CDK4_6_like Catalytic domain of Cyclin-Depend | 99.95 | |
| cd08530 | 256 | STKc_CNK2-like Catalytic domain of the Protein Ser | 99.95 | |
| cd07866 | 311 | STKc_BUR1 Catalytic domain of the Serine/Threonine | 99.95 | |
| cd05581 | 280 | STKc_PDK1 Catalytic domain of the Protein Serine/T | 99.95 | |
| cd07877 | 345 | STKc_p38alpha_MAPK14 Catalytic domain of the Serin | 99.95 | |
| cd05118 | 283 | STKc_CMGC Catalytic domain of CMGC family Serine/T | 99.95 | |
| cd08222 | 260 | STKc_Nek11 Catalytic domain of the Protein Serine/ | 99.95 | |
| cd06633 | 313 | STKc_TAO3 Catalytic domain of the Protein Serine/T | 99.95 | |
| cd07834 | 330 | STKc_MAPK Catalytic domain of the Serine/Threonine | 99.95 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 99.95 | |
| cd07829 | 282 | STKc_CDK_like Catalytic domain of Cyclin-Dependent | 99.94 | |
| PHA02882 | 294 | putative serine/threonine kinase; Provisional | 99.94 | |
| cd05123 | 250 | STKc_AGC Catalytic domain of AGC family Protein Se | 99.94 | |
| cd07851 | 343 | STKc_p38 Catalytic domain of the Serine/Threonine | 99.94 | |
| cd07854 | 342 | STKc_MAPK4_6 Catalytic domain of the Serine/Threon | 99.94 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.94 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.94 | |
| KOG0695 | 593 | consensus Serine/threonine protein kinase [Signal | 99.94 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 99.94 | |
| KOG0608 | 1034 | consensus Warts/lats-like serine threonine kinases | 99.94 | |
| cd07880 | 343 | STKc_p38gamma_MAPK12 Catalytic domain of the Serin | 99.94 | |
| cd07857 | 332 | STKc_MPK1 Catalytic domain of the Serine/Threonine | 99.94 | |
| KOG1151 | 775 | consensus Tousled-like protein kinase [Signal tran | 99.94 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.94 | |
| KOG0607 | 463 | consensus MAP kinase-interacting kinase and relate | 99.93 | |
| PLN03225 | 566 | Serine/threonine-protein kinase SNT7; Provisional | 99.93 | |
| KOG0984 | 282 | consensus Mitogen-activated protein kinase (MAPK) | 99.93 | |
| KOG0667 | 586 | consensus Dual-specificity tyrosine-phosphorylatio | 99.93 | |
| KOG0666 | 438 | consensus Cyclin C-dependent kinase CDK8 [Transcri | 99.93 | |
| KOG0576 | 829 | consensus Mitogen-activated protein kinase kinase | 99.93 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 99.93 | |
| KOG4236 | 888 | consensus Serine/threonine protein kinase PKC mu/P | 99.93 | |
| cd05576 | 237 | STKc_RPK118_like Catalytic domain of the Protein S | 99.93 | |
| KOG0604 | 400 | consensus MAP kinase-activated protein kinase 2 [S | 99.92 | |
| KOG0662 | 292 | consensus Cyclin-dependent kinase CDK5 [Intracellu | 99.92 | |
| PLN03224 | 507 | probable serine/threonine protein kinase; Provisio | 99.92 | |
| smart00220 | 244 | S_TKc Serine/Threonine protein kinases, catalytic | 99.92 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.91 | |
| KOG0669 | 376 | consensus Cyclin T-dependent kinase CDK9 [Cell cyc | 99.91 | |
| KOG1024 | 563 | consensus Receptor-like protein tyrosine kinase RY | 99.9 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.9 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 99.89 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.88 | |
| cd00180 | 215 | PKc Catalytic domain of Protein Kinases. Protein K | 99.87 | |
| KOG0668 | 338 | consensus Casein kinase II, alpha subunit [Signal | 99.87 | |
| KOG0671 | 415 | consensus LAMMER dual specificity kinases [Signal | 99.87 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.87 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.86 | |
| smart00221 | 225 | STYKc Protein kinase; unclassified specificity. Ph | 99.84 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.83 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.83 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.81 | |
| KOG1345 | 378 | consensus Serine/threonine kinase [Signal transduc | 99.81 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.81 | |
| KOG0665 | 369 | consensus Jun-N-terminal kinase (JNK) [Signal tran | 99.8 | |
| KOG0664 | 449 | consensus Nemo-like MAPK-related serine/threonine | 99.8 | |
| KOG1152 | 772 | consensus Signal transduction serine/threonine kin | 99.79 | |
| smart00750 | 176 | KIND kinase non-catalytic C-lobe domain. It is an | 99.79 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.79 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.78 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.78 | |
| KOG0670 | 752 | consensus U4/U6-associated splicing factor PRP4 [R | 99.77 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.77 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 99.75 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.75 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.75 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.74 | |
| KOG1167 | 418 | consensus Serine/threonine protein kinase of the C | 99.72 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.7 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.68 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 99.67 | |
| KOG1023 | 484 | consensus Natriuretic peptide receptor, guanylate | 99.65 | |
| PRK10359 | 232 | lipopolysaccharide core biosynthesis protein; Prov | 99.63 | |
| COG0515 | 384 | SPS1 Serine/threonine protein kinase [General func | 99.63 | |
| KOG0590 | 601 | consensus Checkpoint kinase and related serine/thr | 99.61 | |
| KOG1290 | 590 | consensus Serine/threonine protein kinase [Signal | 99.59 | |
| PRK12274 | 218 | serine/threonine protein kinase; Provisional | 99.56 | |
| cd05147 | 190 | RIO1_euk RIO kinase family; eukaryotic RIO1, catal | 99.45 | |
| cd05145 | 190 | RIO1_like RIO kinase family; RIO1, RIO3 and simila | 99.43 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.42 | |
| KOG1164 | 322 | consensus Casein kinase (serine/threonine/tyrosine | 99.4 | |
| PRK10345 | 210 | hypothetical protein; Provisional | 99.4 | |
| KOG1033 | 516 | consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati | 99.31 | |
| PRK09605 | 535 | bifunctional UGMP family protein/serine/threonine | 99.29 | |
| PRK14879 | 211 | serine/threonine protein kinase; Provisional | 99.29 | |
| cd05144 | 198 | RIO2_C RIO kinase family; RIO2, C-terminal catalyt | 99.28 | |
| KOG0606 | 1205 | consensus Microtubule-associated serine/threonine | 99.28 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.27 | |
| TIGR03724 | 199 | arch_bud32 Kae1-associated kinase Bud32. Members o | 99.26 | |
| PF14531 | 288 | Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_ | 99.24 | |
| KOG1165 | 449 | consensus Casein kinase (serine/threonine/tyrosine | 99.22 | |
| KOG4158 | 598 | consensus BRPK/PTEN-induced protein kinase [Signal | 99.22 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.21 | |
| KOG1163 | 341 | consensus Casein kinase (serine/threonine/tyrosine | 99.18 | |
| smart00090 | 237 | RIO RIO-like kinase. | 99.17 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.16 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.16 | |
| KOG0590 | 601 | consensus Checkpoint kinase and related serine/thr | 99.15 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.11 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.1 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.09 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.04 | |
| cd05120 | 155 | APH_ChoK_like Aminoglycoside 3'-phosphotransferase | 99.03 | |
| PRK01723 | 239 | 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed | 99.03 | |
| TIGR01982 | 437 | UbiB 2-polyprenylphenol 6-hydroxylase. This model | 99.03 | |
| cd05119 | 187 | RIO RIO kinase family, catalytic domain. The RIO k | 99.0 | |
| PRK04750 | 537 | ubiB putative ubiquinone biosynthesis protein UbiB | 98.99 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.99 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.97 | |
| KOG1166 | 974 | consensus Mitotic checkpoint serine/threonine prot | 98.94 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.94 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.93 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.93 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.92 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.91 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.91 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.9 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.89 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.74 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.69 | |
| KOG0601 | 524 | consensus Cyclin-dependent kinase WEE1 [Cell cycle | 98.65 | |
| cd05151 | 170 | ChoK Choline Kinase (ChoK). The ChoK subfamily is | 98.51 | |
| KOG1266 | 458 | consensus Protein kinase [Signal transduction mech | 98.47 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.43 | |
| KOG0601 | 524 | consensus Cyclin-dependent kinase WEE1 [Cell cycle | 98.4 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.38 | |
| KOG0606 | 1205 | consensus Microtubule-associated serine/threonine | 98.32 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.31 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 98.29 | |
| COG3642 | 204 | Mn2+-dependent serine/threonine protein kinase [Si | 98.29 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.11 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.96 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.96 | |
| cd05154 | 223 | ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an | 97.88 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.87 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.86 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.86 | |
| cd05146 | 197 | RIO3_euk RIO kinase family; eukaryotic RIO3, catal | 97.84 | |
| KOG3087 | 229 | consensus Serine/threonine protein kinase [General | 97.81 | |
| COG0661 | 517 | AarF Predicted unusual protein kinase [General fun | 97.81 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.8 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.8 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.74 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-71 Score=660.21 Aligned_cols=634 Identities=28% Similarity=0.419 Sum_probs=412.1
Q ss_pred CCCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEE
Q 042735 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVL 79 (667)
Q Consensus 1 ~L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L 79 (667)
++++|+.|+|++|.+++.+|..+.++++|+.|+|++|++.+.+|.++.++++|++|+|++|.+.+.+|..+.. .+|+.|
T Consensus 234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313 (968)
T ss_pred cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence 3678888888888888888888888888888888888888888888888888888888888888777777665 458888
Q ss_pred EcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccC
Q 042735 80 ALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFF 159 (667)
Q Consensus 80 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 159 (667)
+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|++++..|..+..+.+|+.|++++|.+.
T Consensus 314 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393 (968)
T ss_pred ECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence 88888887777777777777888888777777777777777777777777777777666666666666666666666665
Q ss_pred CccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCC----------------------
Q 042735 160 GEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKL---------------------- 217 (667)
Q Consensus 160 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l---------------------- 217 (667)
+.+|..+..+++|+.|++++|.+++.+|..+.+++.|+.|++++|.+.+.+|..+..+
T Consensus 394 ~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 473 (968)
T PLN00113 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473 (968)
T ss_pred ccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc
Confidence 5555555555555555555555555555555555555555555555554444433333
Q ss_pred -cccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEE
Q 042735 218 -NSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELE 296 (667)
Q Consensus 218 -~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ 296 (667)
++|+.|++++|++.+.+|..+.++++|+.|+|++|++.+.+|..+.++++|+.|++++|.+.+.+|..+..+++|+.|+
T Consensus 474 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 553 (968)
T PLN00113 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553 (968)
T ss_pred cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEE
Confidence 4555555666666666666666677777777777777777777777777777777777777777777777777777777
Q ss_pred CcCCCCCCcCcccccCCcccccc----ccccccCCCCCccccccCcccceeeeccccCccCcCCCCCCCC--CC----C-
Q 042735 297 LSHNFLGREIPSQICSMECCEVF----CTITNSVPTNNFLNCQKGYACQKVVLTFQQFSTSAKICPNLSR--LP----T- 365 (667)
Q Consensus 297 l~~n~l~~~ip~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~--~~----~- 365 (667)
+++|.+.+.+|..+..+..+..+ |.+.+.+|....+.. +....+......|+.... .+ .
T Consensus 554 Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~----------~~~~~~~~n~~lc~~~~~~~~~~c~~~~ 623 (968)
T PLN00113 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLA----------INASAVAGNIDLCGGDTTSGLPPCKRVR 623 (968)
T ss_pred CCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcc----------cChhhhcCCccccCCccccCCCCCcccc
Confidence 77777777777666555544433 223333332211000 000001111233432100 00 0
Q ss_pred -CCC---chh---hHHHHHH---HHHHHhhhccccCCCCCCCCcCcchhh----ccCCCcCHHHHHHHHcCCcCcceeec
Q 042735 366 -NHH---PQS---GCISVIA---YVPIIWDQANREGQRSPQNSQGLLSIL----SFKGKFDYVEIIRAINDFDAKYCIGS 431 (667)
Q Consensus 366 -~~~---~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~f~~~~~lg~ 431 (667)
... ... +++.+++ ++.+.+++++....+..+...+..... .....+++.++. ..|...+.||+
T Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ig~ 700 (968)
T PLN00113 624 KTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDGTWELQFFDSKVSKSITINDIL---SSLKEENVISR 700 (968)
T ss_pred ccceeeeehhHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccchhhhHHHHH---hhCCcccEEcc
Confidence 000 011 1111111 111122222211111111111111110 111234455544 45777889999
Q ss_pred ccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCCCChHH
Q 042735 432 GRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLAT 510 (667)
Q Consensus 432 g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~g~L~~ 510 (667)
|+||.||+|+. .++..||||++..... ...+|++.+++++|||||+++|+|.+.+..++||||+++|+|.+
T Consensus 701 G~~g~Vy~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~ 772 (968)
T PLN00113 701 GKKGASYKGKSIKNGMQFVVKEINDVNS--------IPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSE 772 (968)
T ss_pred CCCeeEEEEEECCCCcEEEEEEccCCcc--------ccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHH
Confidence 99999999986 5788999998864221 12246889999999999999999999999999999999999988
Q ss_pred Hhccc------------------------cCCcccccccCCeeecCCCceEEecccccccccCCCCCcccccccccccCC
Q 042735 511 NLSND------------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566 (667)
Q Consensus 511 ~l~~~------------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aP 566 (667)
++..- ....|.|+||+||++|.++.+++. ||.+...... ....||+.||||
T Consensus 773 ~l~~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~----~~~~~t~~y~aP 847 (968)
T PLN00113 773 VLRNLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTD----TKCFISSAYVAP 847 (968)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccC----CCccccccccCc
Confidence 76431 122355999999999999999886 7766543222 234689999999
Q ss_pred C------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChh------hhhhhhccccCCCCCCCCCchHHHHHHHHHHH
Q 042735 567 D------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPS------VINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634 (667)
Q Consensus 567 E------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (667)
| |+.|+|||||||++|||+||+.|++.......... .........+|+.+....+...+++.++++++
T Consensus 848 E~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 927 (968)
T PLN00113 848 ETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLA 927 (968)
T ss_pred ccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHHH
Confidence 9 57799999999999999999999753221111000 00111223445555443333345677888999
Q ss_pred HhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 635 FSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 635 ~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.+||+.+|++||||+||++++.....
T Consensus 928 ~~Cl~~~P~~RPt~~evl~~L~~~~~ 953 (968)
T PLN00113 928 LHCTATDPTARPCANDVLKTLESASR 953 (968)
T ss_pred HhhCcCCchhCcCHHHHHHHHHHhhc
Confidence 99999999999999999999987644
|
|
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=380.65 Aligned_cols=247 Identities=35% Similarity=0.613 Sum_probs=198.8
Q ss_pred CCCcCHHHHHHHHcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEE
Q 042735 408 KGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487 (667)
Q Consensus 408 ~~~~~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~ 487 (667)
...|++.|+.+||++|+..+.||+|+||.||+|.+.++..||||++....... .++|.+|++++++++|||+|+++
T Consensus 62 ~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~----~~eF~~Ei~~ls~l~H~Nlv~Ll 137 (361)
T KOG1187|consen 62 LRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQG----EREFLNEVEILSRLRHPNLVKLL 137 (361)
T ss_pred cceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcc----hhHHHHHHHHHhcCCCcCcccEE
Confidence 45799999999999999999999999999999999999999999876533211 34699999999999999999999
Q ss_pred EEEEeCC-ceEEEEEecCCCChHHHhccccC-----------------------------CcccccccCCeeecCCCceE
Q 042735 488 GFCSHAR-HSILIYEYLKRGSLATNLSNDAA-----------------------------AEELDISSKNVLLDLEHKAH 537 (667)
Q Consensus 488 g~~~~~~-~~~lv~ey~~~g~L~~~l~~~~~-----------------------------~~~~dlk~~NiLld~~~~~k 537 (667)
|||.+.+ +.+||||||++|+|.++|+.... ..|.||||+|||||+++++|
T Consensus 138 GyC~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aK 217 (361)
T KOG1187|consen 138 GYCLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAK 217 (361)
T ss_pred EEEecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEE
Confidence 9999998 49999999999999998876432 12349999999999999999
Q ss_pred EecccccccccCCCCCcccc-cccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCC-------Chhh
Q 042735 538 VSDFGIAKFLKPDSSNWSAL-VGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILP-------SPSV 603 (667)
Q Consensus 538 l~DFGla~~~~~~~~~~~~~-~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~-------~~~~ 603 (667)
|+|||+|+..........+. .||.+|+|||| ++|+|||||||+|+|++||+.|.+....... .+..
T Consensus 218 lsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~ 297 (361)
T KOG1187|consen 218 LSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLL 297 (361)
T ss_pred ccCccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHH
Confidence 99999998765411112222 89999999996 5699999999999999999988663220000 1122
Q ss_pred hhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 604 INMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.+..+.+++|+++..........+.++.++|.+|++.+|.+||+|.||+++|...
T Consensus 298 ~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~ 352 (361)
T KOG1187|consen 298 EEGKLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGI 352 (361)
T ss_pred HCcchhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhh
Confidence 2335778899998632222125677899999999999999999999999998544
|
|
| >KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=333.82 Aligned_cols=229 Identities=25% Similarity=0.372 Sum_probs=179.7
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC-ceEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR-HSILI 499 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~-~~~lv 499 (667)
+++....||+|..|+||+++++ +++.+|.|.+... .+...+++..+|++++.+..||+||.+||.|.... ...++
T Consensus 80 dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~---~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~ 156 (364)
T KOG0581|consen 80 DLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLN---IDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISIC 156 (364)
T ss_pred HhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeeccc---CCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEee
Confidence 4456678999999999999874 5788999988432 23456788999999999999999999999999988 59999
Q ss_pred EEecCCCChHHHhccc-------------------------cCCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSND-------------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~-------------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||++|+|++.+... ....|+||||+|||+...|++||||||+++.+... ..
T Consensus 157 mEYMDgGSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS--~a 234 (364)
T KOG0581|consen 157 MEYMDGGSLDDILKRVGRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS--IA 234 (364)
T ss_pred hhhcCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCEEeccccccHHhhhh--hc
Confidence 9999999998876531 22335699999999999999999999999987755 45
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
.+++||..||||| |+.++||||||+.++|+++|+.|+..... ...... ..+..+++...|..+.. ....
T Consensus 235 ~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~--~~~~~~-~Ll~~Iv~~ppP~lP~~--~fS~ 309 (364)
T KOG0581|consen 235 NTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNP--PYLDIF-ELLCAIVDEPPPRLPEG--EFSP 309 (364)
T ss_pred ccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCC--CCCCHH-HHHHHHhcCCCCCCCcc--cCCH
Confidence 6799999999999 88999999999999999999999753311 011111 12233444222221111 2344
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
++..++..|+++||.+|||++|+++|.|....
T Consensus 310 ef~~FV~~CL~Kdp~~R~s~~qLl~Hpfi~~~ 341 (364)
T KOG0581|consen 310 EFRSFVSCCLRKDPSERPSAKQLLQHPFIKKF 341 (364)
T ss_pred HHHHHHHHHhcCCcccCCCHHHHhcCHHHhhc
Confidence 67788889999999999999999999987643
|
|
| >KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=345.65 Aligned_cols=228 Identities=30% Similarity=0.536 Sum_probs=178.0
Q ss_pred cCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC-ceEEEEEe
Q 042735 424 DAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR-HSILIYEY 502 (667)
Q Consensus 424 ~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~-~~~lv~ey 502 (667)
.....+|+|+||+||+|.+++...||||++......... .+.|.+|+.+|.+++|||||+++|+|.++. ...+||||
T Consensus 44 ~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~--~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy 121 (362)
T KOG0192|consen 44 PIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDES--RKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEY 121 (362)
T ss_pred hhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHH--HHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEe
Confidence 344559999999999999988777999998765443322 678999999999999999999999999987 79999999
Q ss_pred cCCCChHHHhccc--------------------------cC-CcccccccCCeeecCCC-ceEEecccccccccCCCCCc
Q 042735 503 LKRGSLATNLSND--------------------------AA-AEELDISSKNVLLDLEH-KAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 503 ~~~g~L~~~l~~~--------------------------~~-~~~~dlk~~NiLld~~~-~~kl~DFGla~~~~~~~~~~ 554 (667)
|++|+|.+.++.. .. ..|.||||+|||++.++ ++||||||+++.........
T Consensus 122 ~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~~ 201 (362)
T KOG0192|consen 122 MPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKTSM 201 (362)
T ss_pred CCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECCCccceeeccccccc
Confidence 9999999988551 12 34569999999999998 99999999999876543334
Q ss_pred ccccccccccCCC--------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 555 SALVGTYRYVAPD--------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 555 ~~~~Gt~~y~aPE--------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
+...||+.||||| |+.|+|||||||++|||+||+.||.....+ .+..........+.++...+
T Consensus 202 ~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~----~~~~~v~~~~~Rp~~p~~~~----- 272 (362)
T KOG0192|consen 202 TSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPV----QVASAVVVGGLRPPIPKECP----- 272 (362)
T ss_pred cCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCHH----HHHHHHHhcCCCCCCCccCC-----
Confidence 4578999999998 677999999999999999999998744321 11111112222333333222
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
..+..++.+||+.||++||++.||+..|......+.
T Consensus 273 -~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~~~ 308 (362)
T KOG0192|consen 273 -PHLSSLMERCWLVDPSRRPSFLEIVSRLESIMSHIS 308 (362)
T ss_pred -HHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHhhc
Confidence 245667778999999999999999999887654433
|
|
| >KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=325.95 Aligned_cols=231 Identities=26% Similarity=0.366 Sum_probs=180.4
Q ss_pred cCCcCcceeecccCeEEEEEE-eCCCceEEEEecCCCCCCchH---HhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQI---ADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~~~~---~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
+.|...+.+|+|+||.|-+|. .++|+.||||.+.+....... .......+|+++|.++.|||||++++++..++..
T Consensus 172 d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~ 251 (475)
T KOG0615|consen 172 DYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSS 251 (475)
T ss_pred ceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCce
Confidence 445677889999999999995 577999999998765432211 1222356999999999999999999999999999
Q ss_pred EEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCC---CceEEecccccccccC
Q 042735 497 ILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLE---HKAHVSDFGIAKFLKP 549 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~---~~~kl~DFGla~~~~~ 549 (667)
||||||++||+|.+.+-... ...|+||||+|||+..+ ..+||+|||+|+...
T Consensus 252 YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g- 330 (475)
T KOG0615|consen 252 YMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSG- 330 (475)
T ss_pred EEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEecccchhhccc-
Confidence 99999999999998764332 22355999999999755 789999999999876
Q ss_pred CCCCcccccccccccCCC---------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCC
Q 042735 550 DSSNWSALVGTYRYVAPD---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE---------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (667)
....+.++||||.|+||| |..|+|+||+|||||-+++|.+||..... .+.. .+.+...+.+..+
T Consensus 331 ~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~---~~sl----~eQI~~G~y~f~p 403 (475)
T KOG0615|consen 331 EGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYT---DPSL----KEQILKGRYAFGP 403 (475)
T ss_pred cceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccC---CccH----HHHHhcCcccccC
Confidence 344567899999999999 34589999999999999999999863221 1111 1223333444333
Q ss_pred CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 621 ~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
+.+.+-..+..+++..+|..||+.|||+.|++++.|+..
T Consensus 404 ~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~hpW~~~ 442 (475)
T KOG0615|consen 404 LQWDRISEEALDLINWMLVVDPENRPSADEALNHPWFKD 442 (475)
T ss_pred hhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhcChhhhc
Confidence 444445556778888999999999999999999999973
|
|
| >KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=331.32 Aligned_cols=213 Identities=31% Similarity=0.563 Sum_probs=166.2
Q ss_pred CcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 425 AKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 425 ~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
..+.||+|.||.||.|.+.....||||.++... ...+.|.+|+++|++++|+|||+++|+|..++.++||||||+
T Consensus 210 l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~-----m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~ 284 (468)
T KOG0197|consen 210 LIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGS-----MSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMP 284 (468)
T ss_pred HHHHhcCCccceEEEEEEcCCCcccceEEeccc-----cChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecc
Confidence 446799999999999999988899999887531 234579999999999999999999999999889999999999
Q ss_pred CCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccccc
Q 042735 505 RGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV 558 (667)
Q Consensus 505 ~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~ 558 (667)
+|+|.++|+.+.. ..|+||.++|||++++..+||+|||+||....+ .++...
T Consensus 285 ~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~--~Y~~~~ 362 (468)
T KOG0197|consen 285 KGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFGLARLIGDD--EYTASE 362 (468)
T ss_pred cCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEcccccccccCCC--ceeecC
Confidence 9999999986211 124599999999999999999999999954332 222222
Q ss_pred c---cccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCC--CCCCCCCchHHH
Q 042735 559 G---TYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGK 626 (667)
Q Consensus 559 G---t~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 626 (667)
| ...|.||| |+.|||||||||+||||+| |+.|+..... ..+ .+.++. ++|.| + .+
T Consensus 363 ~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn----~ev-----~~~le~GyRlp~P--~--~C 429 (468)
T KOG0197|consen 363 GGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSN----EEV-----LELLERGYRLPRP--E--GC 429 (468)
T ss_pred CCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCH----HHH-----HHHHhccCcCCCC--C--CC
Confidence 2 36899999 6889999999999999999 8888653321 111 122222 23322 1 23
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
...+.++|..||..+|++||||+.+...+..
T Consensus 430 P~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~ 460 (468)
T KOG0197|consen 430 PDEVYELMKSCWHEDPEDRPTFETLREVLED 460 (468)
T ss_pred CHHHHHHHHHHhhCCcccCCCHHHHHHHHHH
Confidence 3467889999999999999999977666544
|
|
| >KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=314.78 Aligned_cols=232 Identities=25% Similarity=0.377 Sum_probs=183.1
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..++||+|+||+||+++.+ .++.+|+|++++..-.. ..+.+...+|..++.+++||+||+++-.|++.+.+|+
T Consensus 24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~-~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLyl 102 (357)
T KOG0598|consen 24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVE-KKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYL 102 (357)
T ss_pred hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhh-hhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEE
Confidence 578999999999999999999764 57889999987654322 2346678899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|+||+.||+|+.+|.+... ..++|+||+|||||++|+++|+|||+++.........
T Consensus 103 Vld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~~t 182 (357)
T KOG0598|consen 103 VLDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGDAT 182 (357)
T ss_pred EEeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccchhcccCCCcc
Confidence 9999999999999875421 1123999999999999999999999999766555556
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
.++|||+.||||| |+..+|+||+||++|||+||.+||....... .. +.+...+.+.+......
T Consensus 183 ~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~----~~----~~I~~~k~~~~p~~ls~--- 251 (357)
T KOG0598|consen 183 RTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKK----MY----DKILKGKLPLPPGYLSE--- 251 (357)
T ss_pred ccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHH----HH----HHHhcCcCCCCCccCCH---
Confidence 6799999999999 7899999999999999999999986433211 11 11222221111111111
Q ss_pred HHHHHHHhccccCCCCC----CCHHHHHHHHHHhhhhhc
Q 042735 629 SIMEVAFSCLDVSPESR----PTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~R----Pt~~ev~~~l~~~~~~~~ 663 (667)
+..+++..-+..+|++| -.+.+|.+|.+|..+.|+
T Consensus 252 ~ardll~~LL~rdp~~RLg~~~d~~~ik~HpfF~~inW~ 290 (357)
T KOG0598|consen 252 EARDLLKKLLKRDPRQRLGGPGDAEEIKRHPFFKGINWE 290 (357)
T ss_pred HHHHHHHHHhccCHHHhcCCCCChHHhhcCcccccCCHH
Confidence 23456667899999999 478899999999888776
|
|
| >KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=329.21 Aligned_cols=230 Identities=22% Similarity=0.389 Sum_probs=183.4
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
..|...+.||+|||+.||+++. .+|+.||+|++.+..-. .....+...+||++.++|+|||||+++++|++.+..|+|
T Consensus 18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~-k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYiv 96 (592)
T KOG0575|consen 18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLK-KPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIV 96 (592)
T ss_pred ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhc-CcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEE
Confidence 3588899999999999999986 88999999998764322 223345688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
.|+|++|+|...+.... ...|+|||..|++|++++++||+|||+|..+..+.....
T Consensus 97 LELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Erk~ 176 (592)
T KOG0575|consen 97 LELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGERKK 176 (592)
T ss_pred EEecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEecccceeeeecCcccccc
Confidence 99999999988776322 123459999999999999999999999999887766677
Q ss_pred cccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 556 ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
+.||||.|+||| +.-.+||||+|||||-|++|++||+...-. ...+ ++ ..-+-.+|..... +
T Consensus 177 TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vk----ety~-~I-k~~~Y~~P~~ls~------~ 244 (592)
T KOG0575|consen 177 TLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVK----ETYN-KI-KLNEYSMPSHLSA------E 244 (592)
T ss_pred eecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHH----HHHH-HH-HhcCcccccccCH------H
Confidence 899999999999 455799999999999999999998732210 0111 11 1112233332222 3
Q ss_pred HHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 630 IMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
..+++.+.|+.+|.+|||+++|+.+-||...++.
T Consensus 245 A~dLI~~lL~~~P~~Rpsl~~vL~h~Ff~~g~~p 278 (592)
T KOG0575|consen 245 AKDLIRKLLRPNPSERPSLDEVLDHPFFKSGFTP 278 (592)
T ss_pred HHHHHHHHhcCCcccCCCHHHHhcCHhhhCCCcC
Confidence 4466778899999999999999999999766655
|
|
| >KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=306.51 Aligned_cols=222 Identities=25% Similarity=0.398 Sum_probs=170.1
Q ss_pred cCCcCcceeecccCeEEEEEE-eCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEE-EEEeCCc-eE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG-FCSHARH-SI 497 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g-~~~~~~~-~~ 497 (667)
.+|.+.++||+|+||+||++. ..+|..+|.|++.- .-...+..+....|+.+|++++|||||++|+ .+.+..+ .+
T Consensus 19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f--~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evln 96 (375)
T KOG0591|consen 19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQF--GMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLN 96 (375)
T ss_pred HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcch--hhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhH
Confidence 467778899999999999995 67899999999862 2334455677999999999999999999999 4444444 89
Q ss_pred EEEEecCCCChHHHhccc--------------------------------cCCcccccccCCeeecCCCceEEecccccc
Q 042735 498 LIYEYLKRGSLATNLSND--------------------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAK 545 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~--------------------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~ 545 (667)
||||||.+|+|+..+..- ....|.||||.||.||.+|.||++|||++|
T Consensus 97 ivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r 176 (375)
T KOG0591|consen 97 IVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGR 176 (375)
T ss_pred HHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHh
Confidence 999999999998766421 012345999999999999999999999999
Q ss_pred cccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCC
Q 042735 546 FLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619 (667)
Q Consensus 546 ~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (667)
.+......+++.+|||.||+|| |..||||||+||++|||..-++||....- .+. ...+ -....++-
T Consensus 177 ~l~s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~----~~L-~~KI---~qgd~~~~ 248 (375)
T KOG0591|consen 177 FLSSKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNL----LSL-CKKI---EQGDYPPL 248 (375)
T ss_pred HhcchhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccH----HHH-HHHH---HcCCCCCC
Confidence 9988777778899999999999 89999999999999999999999864321 111 1111 12222221
Q ss_pred CCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHH
Q 042735 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQ 654 (667)
Q Consensus 620 ~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~ 654 (667)
+. ..-...+.+++..|++.||+.||+.-.+++.
T Consensus 249 p~--~~YS~~l~~li~~ci~vd~~~RP~t~~~v~d 281 (375)
T KOG0591|consen 249 PD--EHYSTDLRELINMCIAVDPEQRPDTVPYVQD 281 (375)
T ss_pred cH--HHhhhHHHHHHHHHccCCcccCCCcchHHHH
Confidence 11 1223356677789999999999984444433
|
|
| >KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=311.05 Aligned_cols=171 Identities=27% Similarity=0.461 Sum_probs=147.1
Q ss_pred HHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
...+|+..+.||+|+||+||+|+++ ++..||||.+..... ..+.++....|+.+|+.++|||||+++++++.++..|
T Consensus 8 ~~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l--~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~ 85 (429)
T KOG0595|consen 8 VVGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKL--NKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIY 85 (429)
T ss_pred ccccceehhhccCcceEEEEEeEeccCCceEEeeeehhhcc--CHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEE
Confidence 4578888889999999999999874 578899999876432 2345567889999999999999999999999999999
Q ss_pred EEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCC------CceEEecccccccc
Q 042735 498 LIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLE------HKAHVSDFGIAKFL 547 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~------~~~kl~DFGla~~~ 547 (667)
+|||||.||+|.++++.... ..|+||||+||||+.. -.+||+|||+||.+
T Consensus 86 lVMEyC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L 165 (429)
T KOG0595|consen 86 LVMEYCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFL 165 (429)
T ss_pred EEEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhC
Confidence 99999999999999876521 1245999999999864 35899999999998
Q ss_pred cCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCC
Q 042735 548 KPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRG 592 (667)
Q Consensus 548 ~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~ 592 (667)
.+. ....+.||+|.||||| |+.|+|+||.|+|+|||+||+.||+
T Consensus 166 ~~~-~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~ 215 (429)
T KOG0595|consen 166 QPG-SMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFD 215 (429)
T ss_pred Cch-hHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCcc
Confidence 754 3456789999999999 8999999999999999999999986
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=363.16 Aligned_cols=305 Identities=33% Similarity=0.479 Sum_probs=152.5
Q ss_pred CCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEE
Q 042735 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLA 80 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~ 80 (667)
+++|++|+|++|.+++.+|. ..+++|++|+|++|.+++..|..++++++|++|+|++|.+.+.+|..+.. .+|++|+
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred CCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 34555555555555554443 23455555555555555455555555555555555555554445544444 2355555
Q ss_pred cccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCC
Q 042735 81 LENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFG 160 (667)
Q Consensus 81 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 160 (667)
|++|.+.+.+|..+..+.+|+.|++++|++.+.+|..+.++++|++|+|++|++++.+|..++.+++|++|++++|.+.+
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 55555555555555555555555555555554455555555555555555555544444445555555555555555444
Q ss_pred ccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccC
Q 042735 161 EIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240 (667)
Q Consensus 161 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 240 (667)
.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 44444444455555555555444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCCCCeeeccCCcC------------------------CccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEE
Q 042735 241 LTKLEFLNLSTNRF------------------------SSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELE 296 (667)
Q Consensus 241 l~~L~~L~Ls~N~l------------------------~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ 296 (667)
+++|+.|++++|++ .+.+|..+..+++|+.|++++|++.+.+|..+..++.|+.|+
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence 44444444444444 444444444444555555555554444555555555555555
Q ss_pred CcCCCCCCcCcc
Q 042735 297 LSHNFLGREIPS 308 (667)
Q Consensus 297 l~~n~l~~~ip~ 308 (667)
+++|.+.+.+|.
T Consensus 435 Ls~N~l~~~~~~ 446 (968)
T PLN00113 435 ISNNNLQGRINS 446 (968)
T ss_pred CcCCcccCccCh
Confidence 555555444444
|
|
| >KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=306.24 Aligned_cols=223 Identities=27% Similarity=0.430 Sum_probs=178.4
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
.|...+.||+|.||.||+|.. ..++.||+|.+.-....+ +.+...+|+.++++++|+||.++||.+..+..+|++|
T Consensus 14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~d---eIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiM 90 (467)
T KOG0201|consen 14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAED---EIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIM 90 (467)
T ss_pred ccccchhccccccceeeeeeeccccceEEEEEechhhcch---hhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHH
Confidence 456668899999999999975 668899999987544333 3456789999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 501 EYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
|||.+|++.+.|..... ..|.|||+.|||+..+|.+|++|||++..+........+
T Consensus 91 ey~~gGsv~~lL~~~~~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr~t 170 (467)
T KOG0201|consen 91 EYCGGGSVLDLLKSGNILDEFEIAVILREVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRRKT 170 (467)
T ss_pred HHhcCcchhhhhccCCCCccceeeeehHHHHHHhhhhhhcceecccccccceeEeccCcEEEEecceeeeeechhhcccc
Confidence 99999999887764432 124499999999999999999999999988776666678
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
++|||.||||| |+.|+||||+|++.+||++|.+|+..... +++-..+....|+.... .....+
T Consensus 171 fvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hP---------mrvlflIpk~~PP~L~~--~~S~~~ 239 (467)
T KOG0201|consen 171 FVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHP---------MRVLFLIPKSAPPRLDG--DFSPPF 239 (467)
T ss_pred ccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCc---------ceEEEeccCCCCCcccc--ccCHHH
Confidence 99999999999 88999999999999999999999753221 22222222222222111 223357
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.+++..|++++|+.||++.+++++-+-.
T Consensus 240 kEFV~~CL~k~P~~RpsA~~LLKh~FIk 267 (467)
T KOG0201|consen 240 KEFVEACLDKNPEFRPSAKELLKHKFIK 267 (467)
T ss_pred HHHHHHHhhcCcccCcCHHHHhhhHHHH
Confidence 7888899999999999999999986654
|
|
| >KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=326.82 Aligned_cols=226 Identities=24% Similarity=0.446 Sum_probs=172.8
Q ss_pred cCCcCcceeecccCeEEEEEEeCC------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
.+....+.||+|+||+||+|+... ...||||.+++... ...+++|.||+++++.++|||||+++|+|.+++
T Consensus 486 ~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~---~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~ 562 (774)
T KOG1026|consen 486 SDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAE---NQARQDFRREAELLAELQHPNIVRLLGVCREGD 562 (774)
T ss_pred hheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhccccc---HHHHHHHHHHHHHHHhccCCCeEEEEEEEccCC
Confidence 345567789999999999997532 45699999987532 335678999999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhccccC-------C-------------------------------cccccccCCeeecCCCce
Q 042735 495 HSILIYEYLKRGSLATNLSNDAA-------A-------------------------------EELDISSKNVLLDLEHKA 536 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~~-------~-------------------------------~~~dlk~~NiLld~~~~~ 536 (667)
..++|+|||..|||.++|..... . -|.||.++|+|+.++..|
T Consensus 563 P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge~l~V 642 (774)
T KOG1026|consen 563 PLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVGENLVV 642 (774)
T ss_pred eeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceeccceEE
Confidence 99999999999999999853210 0 023999999999999999
Q ss_pred EEecccccccccCCCCCcccc---cccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhh
Q 042735 537 HVSDFGIAKFLKPDSSNWSAL---VGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINM 606 (667)
Q Consensus 537 kl~DFGla~~~~~~~~~~~~~---~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~ 606 (667)
||+|||++|-.-.. .++... .=..+||||| |+.+||||||||||||+.| |+.||...+ ..+++..
T Consensus 643 KIsDfGLsRdiYss-DYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glS----n~EVIe~ 717 (774)
T KOG1026|consen 643 KISDFGLSRDIYSS-DYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLS----NQEVIEC 717 (774)
T ss_pred Eecccccchhhhhh-hhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccc----hHHHHHH
Confidence 99999999853221 111111 1246899999 6889999999999999998 999986443 2233322
Q ss_pred hhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 607 RLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
. .+.++.+ .++ .+..++.++|..||+.+|.+||++.||-..|......
T Consensus 718 i----~~g~lL~-~Pe--~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~ 765 (774)
T KOG1026|consen 718 I----RAGQLLS-CPE--NCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQA 765 (774)
T ss_pred H----HcCCccc-CCC--CCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhc
Confidence 2 1222221 122 2344688899999999999999999999998876554
|
|
| >KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=298.12 Aligned_cols=232 Identities=25% Similarity=0.401 Sum_probs=179.4
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+...+||.|..++||+|+. +.++.||||++.-.... .+.+...+|+..|+.++|||||+++..|..+..+|+|
T Consensus 26 ~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~---~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvV 102 (516)
T KOG0582|consen 26 KDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCN---NDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVV 102 (516)
T ss_pred cceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhh---hhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEe
Confidence 5788889999999999999974 77899999998754332 2356788999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccc--------------------------cCCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 500 YEYLKRGSLATNLSND--------------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~--------------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
|.||.+|++.+.+... ....|+|||+.|||||.+|.|||+|||++..+......
T Consensus 103 mpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R 182 (516)
T KOG0582|consen 103 MPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDR 182 (516)
T ss_pred ehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcCceeeeeecccCce
Confidence 9999999998876431 12235699999999999999999999998866543211
Q ss_pred ---c-ccccccccccCCC--------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCC-C---C
Q 042735 554 ---W-SALVGTYRYVAPD--------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPR-L---P 617 (667)
Q Consensus 554 ---~-~~~~Gt~~y~aPE--------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~---~ 617 (667)
. .+++||+.||||| |+.|+|||||||+..||++|..||... +...+.-+.+.. +|. + .
T Consensus 183 ~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~----pPmkvLl~tLqn--~pp~~~t~~ 256 (516)
T KOG0582|consen 183 QVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKY----PPMKVLLLTLQN--DPPTLLTSG 256 (516)
T ss_pred eeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccC----ChHHHHHHHhcC--CCCCccccc
Confidence 1 5679999999999 789999999999999999999998632 111111111111 110 0 0
Q ss_pred CCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.+..+.......+.+++..|+++||++|||+++++++.||....
T Consensus 257 ~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh~FFk~~k 300 (516)
T KOG0582|consen 257 LDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLKHAFFKKAK 300 (516)
T ss_pred CChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhccHHHhhcc
Confidence 01111222334677888999999999999999999999998543
|
|
| >KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=312.72 Aligned_cols=227 Identities=24% Similarity=0.431 Sum_probs=178.4
Q ss_pred cCCcCcceeecccCeEEEEEE-eCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
..|..-..||+|+.|.||.|+ ..++..||||++..... ...+-...|+.+|+..+|+|||.++..|...+++|.|
T Consensus 273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q----~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVV 348 (550)
T KOG0578|consen 273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQ----PKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVV 348 (550)
T ss_pred hhhcchhhhccccccceeeeeeccCCceEEEEEEEeccC----CchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEE
Confidence 345556779999999999996 56788899999875432 1234578999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccc-----------------------cCCcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 500 YEYLKRGSLATNLSND-----------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~-----------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
||||++|+|.+.+... ....|+|||++|||++.+|.+||+|||++..........++
T Consensus 349 MEym~ggsLTDvVt~~~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR~T 428 (550)
T KOG0578|consen 349 MEYMEGGSLTDVVTKTRMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKRST 428 (550)
T ss_pred EeecCCCchhhhhhcccccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEeccCCcEEEeeeeeeeccccccCcccc
Confidence 9999999998765432 12346699999999999999999999999988777666778
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
.+|||+||||| |..|+||||+|++++||+.|++||-.....+ .. ..+..--.|.+..+ ......+
T Consensus 429 mVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~Plr---Al--yLIa~ng~P~lk~~----~klS~~~ 499 (550)
T KOG0578|consen 429 MVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR---AL--YLIATNGTPKLKNP----EKLSPEL 499 (550)
T ss_pred ccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChHH---HH--HHHhhcCCCCcCCc----cccCHHH
Confidence 99999999999 8899999999999999999999974321111 00 01111111222221 1223457
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.++..+||+.||++||++.|+++|.++..-
T Consensus 500 kdFL~~cL~~dv~~RasA~eLL~HpFl~~a 529 (550)
T KOG0578|consen 500 KDFLDRCLVVDVEQRASAKELLEHPFLKMA 529 (550)
T ss_pred HHHHHHHhhcchhcCCCHHHHhcChhhhhc
Confidence 788899999999999999999999988543
|
|
| >KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=307.48 Aligned_cols=236 Identities=26% Similarity=0.349 Sum_probs=178.4
Q ss_pred HHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
.++||+...+||+|+||.||.|+. .+|..+|+|++++..- ......+....|-++|...++|.||++|..|.+.+.+|
T Consensus 139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M-~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LY 217 (550)
T KOG0605|consen 139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEM-LKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLY 217 (550)
T ss_pred CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHH-HhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeE
Confidence 368999999999999999999976 4588999999876422 11223456889999999999999999999999999999
Q ss_pred EEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccC----
Q 042735 498 LIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKP---- 549 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~---- 549 (667)
|||||++||++...|.... ...|.||||+|+|||..|++||+||||++.+..
T Consensus 218 LiMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~ 297 (550)
T KOG0605|consen 218 LIMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRI 297 (550)
T ss_pred EEEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeeccccccchhhhhhhh
Confidence 9999999999988776432 123559999999999999999999999964311
Q ss_pred -------------------CCC----C--------------------cccccccccccCCC------CCCCchHHHHHHH
Q 042735 550 -------------------DSS----N--------------------WSALVGTYRYVAPD------YRKKCDVYSFRVL 580 (667)
Q Consensus 550 -------------------~~~----~--------------------~~~~~Gt~~y~aPE------~~~~~DV~sfGvv 580 (667)
+.. . +...+|||.||||| |+..+|+||+|||
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~I 377 (550)
T KOG0605|consen 298 ESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCI 377 (550)
T ss_pred hhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHH
Confidence 000 0 12358999999999 7889999999999
Q ss_pred HHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCC---CHHHHHHHHHH
Q 042735 581 ALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRP---TMQTITQQLLF 657 (667)
Q Consensus 581 l~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RP---t~~ev~~~l~~ 657 (667)
||||+.|.+||...........+.+.+ ..+ ..|...+ ...+..+++.+|+. ||++|- .++||.+|.||
T Consensus 378 myEmLvGyPPF~s~tp~~T~rkI~nwr--~~l--~fP~~~~----~s~eA~DLI~rll~-d~~~RLG~~G~~EIK~HPfF 448 (550)
T KOG0605|consen 378 MYEMLVGYPPFCSETPQETYRKIVNWR--ETL--KFPEEVD----LSDEAKDLITRLLC-DPENRLGSKGAEEIKKHPFF 448 (550)
T ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHh--hhc--cCCCcCc----ccHHHHHHHHHHhc-CHHHhcCcccHHHHhcCCcc
Confidence 999999999986332111111111111 111 1111111 11355678889888 999995 59999999999
Q ss_pred hhhhhcc
Q 042735 658 SLVYFSY 664 (667)
Q Consensus 658 ~~~~~~~ 664 (667)
..+.|+.
T Consensus 449 ~~v~W~~ 455 (550)
T KOG0605|consen 449 KGVDWDH 455 (550)
T ss_pred ccCCcch
Confidence 9998874
|
|
| >KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=298.33 Aligned_cols=227 Identities=26% Similarity=0.428 Sum_probs=168.8
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC--ceE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR--HSI 497 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~--~~~ 497 (667)
.++...+.||+|+||.||++... +|...|||.+..... ...+...+|+.+|.+++|||||+++|...... .++
T Consensus 17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~----~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~ 92 (313)
T KOG0198|consen 17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDS----PTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYN 92 (313)
T ss_pred chhhhhccccCccceEEEEEEecCCCcceeeeeeecccc----hhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeE
Confidence 34667788999999999999864 488999998765311 11456889999999999999999999855444 688
Q ss_pred EEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecC-CCceEEecccccccccCCC
Q 042735 498 LIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDL-EHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~-~~~~kl~DFGla~~~~~~~ 551 (667)
+.|||+++|+|.+.+..... ..|.||||+|||++. ++.+||+|||+++......
T Consensus 93 i~mEy~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~ 172 (313)
T KOG0198|consen 93 IFMEYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKG 172 (313)
T ss_pred eeeeccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCcccccccccc
Confidence 99999999999998765431 123499999999999 7999999999999766311
Q ss_pred ---CCcccccccccccCCCC-----CC--CchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 552 ---SNWSALVGTYRYVAPDY-----RK--KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 552 ---~~~~~~~Gt~~y~aPE~-----~~--~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
.......||+.|||||. .. ++||||+||++.||+||++||... ........... ..-..|.+|...+
T Consensus 173 ~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~--~~~~~~~~~ig-~~~~~P~ip~~ls 249 (313)
T KOG0198|consen 173 TKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEF--FEEAEALLLIG-REDSLPEIPDSLS 249 (313)
T ss_pred ccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhh--cchHHHHHHHh-ccCCCCCCCcccC
Confidence 12335789999999993 23 899999999999999999998642 00111111111 1111233333222
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
. ...+++.+|+..+|++||||++++++.+....
T Consensus 250 ~------~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~~~~ 282 (313)
T KOG0198|consen 250 D------EAKDFLRKCFKRDPEKRPTAEELLEHPFLKQN 282 (313)
T ss_pred H------HHHHHHHHHhhcCcccCcCHHHHhhChhhhcc
Confidence 2 34578889999999999999999999887543
|
|
| >KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=313.77 Aligned_cols=233 Identities=22% Similarity=0.348 Sum_probs=181.9
Q ss_pred HHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCce
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHS 496 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~ 496 (667)
.+++|...++||+|+||+|++|+++ +++.+|||.+++..-.. ..+.+..+.|.+++.-.. ||.++.++++|.+.++.
T Consensus 366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~-~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l 444 (694)
T KOG0694|consen 366 TLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQ-RDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHL 444 (694)
T ss_pred cccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceec-cccHHHHHHHHHHHHHhccCCeEeecccccccCCeE
Confidence 4578999999999999999999875 47789999998764332 234567888988887665 99999999999999999
Q ss_pred EEEEEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
|.||||+.||++..+.+.+.. ...+|||-+|||||.+|++||+|||++|...-....
T Consensus 445 ~fvmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g~~ 524 (694)
T KOG0694|consen 445 FFVMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQGDR 524 (694)
T ss_pred EEEEEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEecccccccccCCCCCc
Confidence 999999999997554443321 113499999999999999999999999976644456
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
++++||||.||||| |+..+|+|||||+||||+.|+.||...+.. .+.+..+. .++..|... .
T Consensus 525 TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEe----e~FdsI~~--d~~~yP~~l------s 592 (694)
T KOG0694|consen 525 TSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEE----EVFDSIVN--DEVRYPRFL------S 592 (694)
T ss_pred cccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHH----HHHHHHhc--CCCCCCCcc------c
Confidence 77899999999998 899999999999999999999998744321 11111111 122333222 2
Q ss_pred HHHHHHHHhccccCCCCCCCH-----HHHHHHHHHhhhhhcc
Q 042735 628 ISIMEVAFSCLDVSPESRPTM-----QTITQQLLFSLVYFSY 664 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~-----~ev~~~l~~~~~~~~~ 664 (667)
.+.+.++.+-+.++|++|--+ .+|.++.+|....|+.
T Consensus 593 ~ea~~il~~ll~k~p~kRLG~~e~d~~~i~~hpFFr~i~w~~ 634 (694)
T KOG0694|consen 593 KEAIAIMRRLLRKNPEKRLGSGERDAEDIKKHPFFRSIDWDD 634 (694)
T ss_pred HHHHHHHHHHhccCcccccCCCCCCchhhhhCCccccCCHHH
Confidence 245667789999999999664 7899999999888763
|
|
| >KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=306.98 Aligned_cols=229 Identities=23% Similarity=0.347 Sum_probs=181.5
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||||+. .+.+.||+|.+.+.... .++.+...+|++++++++|||||.++++|+...+.|+|
T Consensus 2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~--~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vV 79 (808)
T KOG0597|consen 2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRN--EKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVV 79 (808)
T ss_pred cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCc--hHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEE
Confidence 4566778899999999999975 45678999988765432 34567789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccCC------------------------cccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 500 YEYLKRGSLATNLSNDAAA------------------------EELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~~------------------------~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
.||+.| +|+..|..+... .+.|+||+|||++..|++|+||||+||.+.......+
T Consensus 80 te~a~g-~L~~il~~d~~lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~vlt 158 (808)
T KOG0597|consen 80 TEYAVG-DLFTILEQDGKLPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTSVLT 158 (808)
T ss_pred ehhhhh-hHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecCCCceeechhhhhhhcccCceeee
Confidence 999998 999988765321 1239999999999999999999999998876666667
Q ss_pred cccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccc-cCCCCCCCCCchHHHHH
Q 042735 556 ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEM-LDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 628 (667)
.+.|||.||||| |+..+|.||+|||+||+.+|++||-..+ +... +..+ -|+..++. ....
T Consensus 159 sikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~s-------i~~L-v~~I~~d~v~~p~-----~~S~ 225 (808)
T KOG0597|consen 159 SIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARS-------ITQL-VKSILKDPVKPPS-----TASS 225 (808)
T ss_pred eccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHH-------HHHH-HHHHhcCCCCCcc-----cccH
Confidence 789999999999 7889999999999999999999974211 1111 1111 23332222 1223
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhccC
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYA 665 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~~~ 665 (667)
.+..+...-+.+||.+|-|-.+++.|.+-....+...
T Consensus 226 ~f~nfl~gLL~kdP~~RltW~~Ll~HpF~k~~~~~~~ 262 (808)
T KOG0597|consen 226 SFVNFLQGLLIKDPAQRLTWTDLLGHPFWKGKINIAE 262 (808)
T ss_pred HHHHHHHHHhhcChhhcccHHHHhcChHHhhhhhhhc
Confidence 4566777889999999999999999998887666543
|
|
| >KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=302.52 Aligned_cols=220 Identities=29% Similarity=0.459 Sum_probs=168.6
Q ss_pred CCcCHHHHHHHHcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEE
Q 042735 409 GKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488 (667)
Q Consensus 409 ~~~~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g 488 (667)
+.+.+++|. ..+.+|+|+-|.||+|+++ ++.|||||++.- -..+|+-|++|+||||+.|.|
T Consensus 119 WeiPFe~Is-------ELeWlGSGaQGAVF~Grl~-netVAVKKV~el-----------kETdIKHLRkLkH~NII~FkG 179 (904)
T KOG4721|consen 119 WEIPFEEIS-------ELEWLGSGAQGAVFLGRLH-NETVAVKKVREL-----------KETDIKHLRKLKHPNIITFKG 179 (904)
T ss_pred ccCCHHHhh-------hhhhhccCcccceeeeecc-CceehhHHHhhh-----------hhhhHHHHHhccCcceeeEee
Confidence 345566653 3467999999999999995 456999987531 125788899999999999999
Q ss_pred EEEeCCceEEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEeccccc
Q 042735 489 FCSHARHSILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIA 544 (667)
Q Consensus 489 ~~~~~~~~~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla 544 (667)
+|.....++||||||+.|-|...|..... ..|.|||+-||||..+..+||+|||.+
T Consensus 180 VCtqsPcyCIiMEfCa~GqL~~VLka~~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS 259 (904)
T KOG4721|consen 180 VCTQSPCYCIIMEFCAQGQLYEVLKAGRPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISDFGTS 259 (904)
T ss_pred eecCCceeEEeeeccccccHHHHHhccCccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccceEEeccccch
Confidence 99999999999999999999988865421 124499999999999999999999999
Q ss_pred ccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCC
Q 042735 545 KFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618 (667)
Q Consensus 545 ~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (667)
+..... .....++||..||||| ..+|+||||||||||||+||..||..++.. .++...-...+.-.+|.
T Consensus 260 ~e~~~~-STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdss----AIIwGVGsNsL~LpvPs 334 (904)
T KOG4721|consen 260 KELSDK-STKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSS----AIIWGVGSNSLHLPVPS 334 (904)
T ss_pred Hhhhhh-hhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchh----eeEEeccCCcccccCcc
Confidence 976644 3445689999999999 467999999999999999999998643321 11111111222222333
Q ss_pred CCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.+++ -+.-++.+||+..|..||+|.+|+.|+.-.
T Consensus 335 tcP~------GfklL~Kqcw~sKpRNRPSFrqil~HldIa 368 (904)
T KOG4721|consen 335 TCPD------GFKLLLKQCWNSKPRNRPSFRQILLHLDIA 368 (904)
T ss_pred cCch------HHHHHHHHHHhcCCCCCccHHHHHHHHhhc
Confidence 3333 234466799999999999999999997643
|
|
| >KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=302.75 Aligned_cols=233 Identities=25% Similarity=0.371 Sum_probs=182.9
Q ss_pred HHHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCc
Q 042735 418 RAINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARH 495 (667)
Q Consensus 418 ~~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~ 495 (667)
+...||..++.||+|+|++||+|+. ..++.+|||++.+..-..+ ...+-..+|-.+|.+| .||.||+||-.|.++..
T Consensus 70 k~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike-~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s 148 (604)
T KOG0592|consen 70 KTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKE-KKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES 148 (604)
T ss_pred CChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhh-cccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence 3457899999999999999999964 6688999999876543221 1233466888999999 79999999999999999
Q ss_pred eEEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
+|.|+||+++|+|.+.+.+-. ...|+||||+|||||.||++||+|||-|+.+.+..
T Consensus 149 LYFvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~ 228 (604)
T KOG0592|consen 149 LYFVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQ 228 (604)
T ss_pred eEEEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeeccccccCChhh
Confidence 999999999999988775421 23456999999999999999999999999876432
Q ss_pred C-----------C--cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhcccc
Q 042735 552 S-----------N--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612 (667)
Q Consensus 552 ~-----------~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~ 612 (667)
. . ..+++||..|++|| .+..+|+|+||||+|+|+.|++||...........+ ..+
T Consensus 229 ~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliFqkI------~~l 302 (604)
T KOG0592|consen 229 KSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIFQKI------QAL 302 (604)
T ss_pred ccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHHHHHH------HHh
Confidence 1 1 14589999999999 356899999999999999999998754432211111 112
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 613 DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
+-.+++..++ .+.+++.+-|..||.+|+|.+||.+|.+|..+.|+
T Consensus 303 ~y~fp~~fp~------~a~dLv~KLLv~dp~~Rlt~~qIk~HpFF~~Vdw~ 347 (604)
T KOG0592|consen 303 DYEFPEGFPE------DARDLIKKLLVRDPSDRLTSQQIKAHPFFEGVDWE 347 (604)
T ss_pred cccCCCCCCH------HHHHHHHHHHccCccccccHHHHhhCcccccCChh
Confidence 3344444443 34566778899999999999999999999999886
|
|
| >KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=283.45 Aligned_cols=236 Identities=22% Similarity=0.369 Sum_probs=176.2
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
+.|+....+|+|+||+||+++.+ +|+.||||++.... ++....+-.+|||+.+++++|||+|.++.+|...+..++|
T Consensus 2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Ese--dd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLV 79 (396)
T KOG0593|consen 2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESE--DDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLV 79 (396)
T ss_pred cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCC--ccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEE
Confidence 35677788999999999999865 58899999987532 2334456789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcc------------------------ccCCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 500 YEYLKRGSLATNLSN------------------------DAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~------------------------~~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
+|||+..-|.+.-.. .....|.||||+|||++.+|.+||||||+||.+......+|
T Consensus 80 FE~~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd~YT 159 (396)
T KOG0593|consen 80 FEYCDHTVLHELERYPNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFARTLSAPGDNYT 159 (396)
T ss_pred eeecchHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCCcEEeccchhhHhhcCCcchhh
Confidence 999987544332111 11234569999999999999999999999999886666678
Q ss_pred cccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh------hhhcccc-------CCC
Q 042735 556 ALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN------MRLDEML-------DPR 615 (667)
Q Consensus 556 ~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~------~~~~~~~-------~~~ 615 (667)
..+.|..|-||| |...+||||.||++.||+||.+-|...+++-....+.. .+...++ .-+
T Consensus 160 DYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~ 239 (396)
T KOG0593|consen 160 DYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVR 239 (396)
T ss_pred hhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeee
Confidence 889999999999 78899999999999999999987654333211100000 0000111 112
Q ss_pred CCCCCC-c-----hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 616 LPPPSP-D-----VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 616 ~~~~~~-~-----~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
+|.+.. + ......-+++++..|+..||++|++-+|++.+.+|.
T Consensus 240 lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~H~yFd 288 (396)
T KOG0593|consen 240 LPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLHHPYFD 288 (396)
T ss_pred cCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhcChHHH
Confidence 222211 1 111223577899999999999999999999998883
|
|
| >KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=285.83 Aligned_cols=221 Identities=27% Similarity=0.423 Sum_probs=179.3
Q ss_pred CcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|++...+|+|+||.||+|.+ .+|..+|+|++... .+.+++.+|+.+|.+.+.|++|++||.|.....+|+|||
T Consensus 35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~------sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVME 108 (502)
T KOG0574|consen 35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD------TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVME 108 (502)
T ss_pred HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc------chHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehh
Confidence 55667899999999999965 67899999997642 245679999999999999999999999999999999999
Q ss_pred ecCCCChHHHhcccc--CC-----------------------cccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 502 YLKRGSLATNLSNDA--AA-----------------------EELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 502 y~~~g~L~~~l~~~~--~~-----------------------~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
||..|+..+.++... .. .|.|||+.|||+..+|.+|++|||+|..+........+
T Consensus 109 YCGAGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRNT 188 (502)
T KOG0574|consen 109 YCGAGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRNT 188 (502)
T ss_pred hcCCCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccchhhhhhccccchhhhhHHhhCc
Confidence 999999988765321 11 13499999999999999999999999987766666678
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
+.|||.||||| |+.++||||+|++..||..|++|+.... .++..-++.-..|+..........++
T Consensus 189 VIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIH---------PMRAIFMIPT~PPPTF~KPE~WS~~F 259 (502)
T KOG0574|consen 189 VIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIH---------PMRAIFMIPTKPPPTFKKPEEWSSEF 259 (502)
T ss_pred cccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCccccc---------ccceeEeccCCCCCCCCChHhhhhHH
Confidence 89999999998 8999999999999999999999975322 22222233333333333334455678
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
-+++..|+.+.|++|-|+.++++|.+-.
T Consensus 260 ~DFi~~CLiK~PE~R~TA~~L~~H~Fik 287 (502)
T KOG0574|consen 260 NDFIRSCLIKKPEERKTALRLCEHTFIK 287 (502)
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhhc
Confidence 8999999999999999999999987653
|
|
| >PHA02988 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=290.17 Aligned_cols=223 Identities=22% Similarity=0.314 Sum_probs=167.1
Q ss_pred cCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe----CCceEEE
Q 042735 424 DAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH----ARHSILI 499 (667)
Q Consensus 424 ~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~----~~~~~lv 499 (667)
.....||+|++|.||+|.+ +++.||||++..... ......+.|.+|++++++++|||||+++|++.+ ....++|
T Consensus 23 ~~~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~-~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv 100 (283)
T PHA02988 23 YTSVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHK-GHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLI 100 (283)
T ss_pred CCCeEEeeCCceEEEEEEE-CCEEEEEEecccccc-ccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEE
Confidence 3346799999999999998 577899999865422 222234678899999999999999999999977 3468899
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||+++|+|.+.+.... ...|.||||+||+++.++.+||+|||+++......
T Consensus 101 ~Ey~~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~--- 177 (283)
T PHA02988 101 LEYCTRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPP--- 177 (283)
T ss_pred EEeCCCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEEcccchHhhhcccc---
Confidence 99999999998875421 12255999999999999999999999998654322
Q ss_pred ccccccccccCCC--------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 555 SALVGTYRYVAPD--------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 555 ~~~~Gt~~y~aPE--------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
....||+.|+||| |+.++|||||||++|||+||+.||.... ..............+..+...
T Consensus 178 ~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~----~~~~~~~i~~~~~~~~~~~~~------ 247 (283)
T PHA02988 178 FKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLT----TKEIYDLIINKNNSLKLPLDC------ 247 (283)
T ss_pred ccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCC----HHHHHHHHHhcCCCCCCCCcC------
Confidence 2356899999999 4568999999999999999999986332 111111111111122222111
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
...+.+++.+||+.||++||||+|+++.|..-..+
T Consensus 248 ~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~~~ 282 (283)
T PHA02988 248 PLEIKCIVEACTSHDSIKRPNIKEILYNLSLYKFY 282 (283)
T ss_pred cHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHhc
Confidence 22467788899999999999999999988764433
|
|
| >KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=320.79 Aligned_cols=223 Identities=26% Similarity=0.426 Sum_probs=168.2
Q ss_pred CcCcceeecccCeEEEEEEeCC--C----ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 423 FDAKYCIGSGRHGSVYRAELPS--K----EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~~--~----~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
.+..+.||+|+||.||+|.+.+ + ..||||.+.... +.....+|.+|+.+|++++|||||+++|+|.+....
T Consensus 694 v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~---~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~ 770 (1025)
T KOG1095|consen 694 VTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLS---SEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPP 770 (1025)
T ss_pred eEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccC---CHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCc
Confidence 3456679999999999998744 3 249999887543 234567899999999999999999999999999999
Q ss_pred EEEEEecCCCChHHHhccccCC-------------------------------cccccccCCeeecCCCceEEecccccc
Q 042735 497 ILIYEYLKRGSLATNLSNDAAA-------------------------------EELDISSKNVLLDLEHKAHVSDFGIAK 545 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~~-------------------------------~~~dlk~~NiLld~~~~~kl~DFGla~ 545 (667)
+|++|||++|+|..+|++.+.+ .|.||.++|+||++...|||+|||+||
T Consensus 771 ~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaDFGlAr 850 (1025)
T KOG1095|consen 771 LILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIADFGLAR 850 (1025)
T ss_pred EEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEcccchhH
Confidence 9999999999999999875321 134999999999999999999999999
Q ss_pred cccCCCCCcccccc--cccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCC
Q 042735 546 FLKPDSSNWSALVG--TYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRL 616 (667)
Q Consensus 546 ~~~~~~~~~~~~~G--t~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (667)
..-...-......+ ...||||| |+.|+|||||||++||++| |..||...+. ..+..... -..++
T Consensus 851 Diy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n----~~v~~~~~---~ggRL 923 (1025)
T KOG1095|consen 851 DIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSN----FEVLLDVL---EGGRL 923 (1025)
T ss_pred hhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcch----HHHHHHHH---hCCcc
Confidence 33221111111112 25899999 6889999999999999999 8888764332 11211111 12344
Q ss_pred CCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
+++. .+ ...+.++|..||+.+|++||++..|++++..+.
T Consensus 924 ~~P~-~C---P~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~ 962 (1025)
T KOG1095|consen 924 DPPS-YC---PEKLYQLMLQCWKHDPEDRPSFRTIVEQDPAIS 962 (1025)
T ss_pred CCCC-CC---ChHHHHHHHHHccCChhhCccHHHHHhhhhhhh
Confidence 4332 22 225678999999999999999999999776543
|
|
| >KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=275.21 Aligned_cols=226 Identities=24% Similarity=0.373 Sum_probs=176.1
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
+++|+..+.||.|+||+|..++.+ +|..+|+|++.+... ...+..+....|..+|+.+.||++|++++.+.+.+..|+
T Consensus 43 l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~v-VklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lym 121 (355)
T KOG0616|consen 43 LQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKV-VKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYM 121 (355)
T ss_pred hhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHH-HHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEE
Confidence 468899999999999999999864 577899998865322 223344567889999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccCC------------------------cccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDAAA------------------------EELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~~------------------------~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||++||.|+.+|+..+.. ..+|+||+|||+|.+|.+||+|||+|+.+... .
T Consensus 122 vmeyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~r---T 198 (355)
T KOG0616|consen 122 VMEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGR---T 198 (355)
T ss_pred EEeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceEEecCc---E
Confidence 99999999999999763211 01399999999999999999999999987533 3
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCC--CCCCCCchHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPR--LPPPSPDVQGK 626 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 626 (667)
-+.||||.|+||| |..++|.|||||++|||+.|.+||.....+ .+. ..++... .|.....
T Consensus 199 ~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~----~iY----~KI~~~~v~fP~~fs~---- 266 (355)
T KOG0616|consen 199 WTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPI----QIY----EKILEGKVKFPSYFSS---- 266 (355)
T ss_pred EEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChH----HHH----HHHHhCcccCCcccCH----
Confidence 4689999999999 778999999999999999999998643321 111 2222222 2332222
Q ss_pred HHHHHHHHHhccccCCCCC-----CCHHHHHHHHHHhhhhhc
Q 042735 627 LISIMEVAFSCLDVSPESR-----PTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~R-----Pt~~ev~~~l~~~~~~~~ 663 (667)
.+.+++..-++.|-.+| +-..+|..|.||..+.|.
T Consensus 267 --~~kdLl~~LL~vD~t~R~gnlknG~~dIk~H~wF~~v~W~ 306 (355)
T KOG0616|consen 267 --DAKDLLKKLLQVDLTKRFGNLKNGVEDIKNHPWFKGVDWE 306 (355)
T ss_pred --HHHHHHHHHHhhhhHhhhcCcCCCccccccCcccccccHH
Confidence 23445556678888888 456789999999988775
|
|
| >KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=268.96 Aligned_cols=225 Identities=26% Similarity=0.400 Sum_probs=177.9
Q ss_pred HHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
++++|+..+.||+|.||.||.|+. +++-.||+|++.+.. .......+++.+|+++-+.++||||.++||+|.+....|
T Consensus 20 ~l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsq-i~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riy 98 (281)
T KOG0580|consen 20 TLDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQ-ILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIY 98 (281)
T ss_pred chhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHH-HHHhcchhhhhheeEeecccCCccHHhhhhheeccceeE
Confidence 357899999999999999999986 456789999886532 122233567999999999999999999999999999999
Q ss_pred EEEEecCCCChHHHhccccCC--------------------------cccccccCCeeecCCCceEEecccccccccCCC
Q 042735 498 LIYEYLKRGSLATNLSNDAAA--------------------------EELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~~--------------------------~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
+++||.++|++...|++.... .+.|+||+|+|++.++..|++|||.+-..+ .
T Consensus 99 LilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p--~ 176 (281)
T KOG0580|consen 99 LILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP--S 176 (281)
T ss_pred EEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCCCeeccCCCceeecC--C
Confidence 999999999999998743211 134999999999999999999999997654 3
Q ss_pred CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
....+.|||..|.||| ++.++|+|++||+.||++.|.+||..... ...-.++ ..++-..|...+.
T Consensus 177 ~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~-----~etYkrI-~k~~~~~p~~is~--- 247 (281)
T KOG0580|consen 177 NKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSH-----SETYKRI-RKVDLKFPSTISG--- 247 (281)
T ss_pred CCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhh-----HHHHHHH-HHccccCCcccCh---
Confidence 4456899999999999 68899999999999999999999864331 1111111 1123333332222
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
...+++.+|+..+|.+|.+..|++.+.|-.
T Consensus 248 ---~a~dlI~~ll~~~p~~r~~l~~v~~hpwI~ 277 (281)
T KOG0580|consen 248 ---GAADLISRLLVKNPIERLALTEVMDHPWIV 277 (281)
T ss_pred ---hHHHHHHHHhccCccccccHHHHhhhHHHH
Confidence 345778899999999999999999998854
|
|
| >KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=294.59 Aligned_cols=228 Identities=22% Similarity=0.332 Sum_probs=176.7
Q ss_pred HHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchH-HhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCc
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQI-ADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARH 495 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~-~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~ 495 (667)
....|...+.||+|+||+||.|.. .++..||||.+......... ...+...+|+.++++++ ||||++++.++.....
T Consensus 15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~ 94 (370)
T KOG0583|consen 15 SIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTK 94 (370)
T ss_pred ccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCe
Confidence 356788899999999999999965 56789999976553221111 23445678999999999 9999999999999999
Q ss_pred eEEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCC-CceEEecccccccccCC
Q 042735 496 SILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLE-HKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~-~~~kl~DFGla~~~~~~ 550 (667)
.|+||||+.+|+|.+.+..... ..|.||||+|||+|.+ +++||+|||++......
T Consensus 95 ~~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~~~ 174 (370)
T KOG0583|consen 95 IYIVMEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAISPGE 174 (370)
T ss_pred EEEEEEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCCCCEEEeccccccccCCC
Confidence 9999999999999998866211 1245999999999999 99999999999987433
Q ss_pred CCCcccccccccccCCC-------CC-CCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCC--CCCCCC
Q 042735 551 SSNWSALVGTYRYVAPD-------YR-KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS 620 (667)
Q Consensus 551 ~~~~~~~~Gt~~y~aPE-------~~-~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 620 (667)
.....+.|||+.|+||| |+ .++||||+||+||.|++|+.||+..... ... ..+... .+|...
T Consensus 175 ~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~----~l~----~ki~~~~~~~p~~~ 246 (370)
T KOG0583|consen 175 DGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVP----NLY----RKIRKGEFKIPSYL 246 (370)
T ss_pred CCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHH----HHH----HHHhcCCccCCCCc
Confidence 34567789999999999 43 5899999999999999999998742210 011 111111 122211
Q ss_pred CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 621 ~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
. ..++..++.+|+..+|.+|+|+.+|+.+.|+..
T Consensus 247 ~-----S~~~~~Li~~mL~~~P~~R~t~~~i~~h~w~~~ 280 (370)
T KOG0583|consen 247 L-----SPEARSLIEKMLVPDPSTRITLLEILEHPWFQK 280 (370)
T ss_pred C-----CHHHHHHHHHHcCCCcccCCCHHHHhhChhhcc
Confidence 0 224567778999999999999999999999986
|
|
| >KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=305.19 Aligned_cols=237 Identities=24% Similarity=0.488 Sum_probs=183.2
Q ss_pred cCCCcCHHHHHHHHcC---------CcCcceeecccCeEEEEEEeCC----CceEEEEecCCCCCCchHHhHHHHHHHHH
Q 042735 407 FKGKFDYVEIIRAIND---------FDAKYCIGSGRHGSVYRAELPS----KEFLAVKKFNSPLPSDQIADQKEFFAEIE 473 (667)
Q Consensus 407 ~~~~~~~~~~~~~~~~---------f~~~~~lg~g~~g~vy~~~~~~----~~~~avk~~~~~~~~~~~~~~~~~~~E~~ 473 (667)
+..-++|++=-+|... ..+.++||.|.||.||+|+++- ...||||.++.... .+.+.+|+.|+.
T Consensus 606 YiDP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gyt---ekqrrdFL~EAs 682 (996)
T KOG0196|consen 606 YIDPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYT---EKQRRDFLSEAS 682 (996)
T ss_pred ecCCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCcc---HHHHhhhhhhhh
Confidence 4445666544333333 3455789999999999998743 34699999987654 345678999999
Q ss_pred HHHhcCCCCeeEEEEEEEeCCceEEEEEecCCCChHHHhccccCC-------------------------cccccccCCe
Q 042735 474 ALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAA-------------------------EELDISSKNV 528 (667)
Q Consensus 474 ~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~-------------------------~~~dlk~~Ni 528 (667)
||.+++||||+++-|+....+..+||.|||+||+|..+|+..... -|.||.++||
T Consensus 683 IMGQFdHPNIIrLEGVVTks~PvMIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNI 762 (996)
T KOG0196|consen 683 IMGQFDHPNIIRLEGVVTKSKPVMIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNI 762 (996)
T ss_pred hcccCCCCcEEEEEEEEecCceeEEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhhe
Confidence 999999999999999999999999999999999999999764311 1349999999
Q ss_pred eecCCCceEEecccccccccCCCCC-ccccccc--ccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCC
Q 042735 529 LLDLEHKAHVSDFGIAKFLKPDSSN-WSALVGT--YRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSIL 598 (667)
Q Consensus 529 Lld~~~~~kl~DFGla~~~~~~~~~-~~~~~Gt--~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~ 598 (667)
|++.+-..||+|||++|.+.++... +++..|. .+|.||| ++.+||||||||||||.++ |++|+.. +
T Consensus 763 LVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWd----m 838 (996)
T KOG0196|consen 763 LVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWD----M 838 (996)
T ss_pred eeccceEEEeccccceeecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccc----c
Confidence 9999999999999999988766533 3444453 6899999 5789999999999999665 9999642 3
Q ss_pred CChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 599 PSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..+.+++.. + .+-++|+|. ++...+.++|+.||++|-.+||.|+||+..|--
T Consensus 839 SNQdVIkaI-e--~gyRLPpPm----DCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDk 890 (996)
T KOG0196|consen 839 SNQDVIKAI-E--QGYRLPPPM----DCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDK 890 (996)
T ss_pred chHHHHHHH-H--hccCCCCCC----CCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 334444332 1 134555542 334468889999999999999999999987754
|
|
| >KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=293.37 Aligned_cols=227 Identities=26% Similarity=0.405 Sum_probs=176.1
Q ss_pred CCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
++.....||+|+||+||+|++.+. ||||++....... +..+.|+.|+..+++-||.||+-|.|||..+.. .||.-
T Consensus 393 ev~l~~rIGsGsFGtV~Rg~whGd--VAVK~Lnv~~pt~--~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~-AIiTq 467 (678)
T KOG0193|consen 393 EVLLGERIGSGSFGTVYRGRWHGD--VAVKLLNVDDPTP--EQLQAFKNEVAVLKKTRHENILLFMGACMNPPL-AIITQ 467 (678)
T ss_pred Hhhccceeccccccceeecccccc--eEEEEEecCCCCH--HHHHHHHHHHHHHhhcchhhheeeehhhcCCce-eeeeh
Confidence 345678899999999999998544 8999998765543 356789999999999999999999999998877 89999
Q ss_pred ecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccC--CCCCc
Q 042735 502 YLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKP--DSSNW 554 (667)
Q Consensus 502 y~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~--~~~~~ 554 (667)
+|+|-+|+.+++... ...|.|||+.||++++++.|||+|||++..-.. .....
T Consensus 468 wCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~ 547 (678)
T KOG0193|consen 468 WCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQL 547 (678)
T ss_pred hccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEecccceeeeeeecccccc
Confidence 999999999887431 112449999999999999999999999965322 22223
Q ss_pred ccccccccccCCC---------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 555 SALVGTYRYVAPD---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 555 ~~~~Gt~~y~aPE---------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
....|..-||||| |+..+||||||||+|||+||..||.. ....+++.+..+..+.+++.......
T Consensus 548 ~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi----~~~dqIifmVGrG~l~pd~s~~~s~~-- 621 (678)
T KOG0193|consen 548 EQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSI----QNRDQIIFMVGRGYLMPDLSKIRSNC-- 621 (678)
T ss_pred CCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCC----CChhheEEEecccccCccchhhhccC--
Confidence 4456888999998 78899999999999999999999862 12233333333444444443333333
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..++.+++..||..++++||.+.+|+.+|.....
T Consensus 622 -pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~ 655 (678)
T KOG0193|consen 622 -PKAMKRLLSDCWKFDREERPLFPQLLSKLEELLP 655 (678)
T ss_pred -HHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhh
Confidence 3356677889999999999999999998776544
|
|
| >KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=295.95 Aligned_cols=228 Identities=27% Similarity=0.379 Sum_probs=167.6
Q ss_pred cCcceeecccCeEEEEEEeCC--C--ce-EEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 424 DAKYCIGSGRHGSVYRAELPS--K--EF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 424 ~~~~~lg~g~~g~vy~~~~~~--~--~~-~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
...+.||+|+||.||+|++.. + .. ||||..+.... ......++|++|+++|++++|||||++||++.....+++
T Consensus 160 ~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~-~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~i 238 (474)
T KOG0194|consen 160 ELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSE-LTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLML 238 (474)
T ss_pred cccceeecccccEEEEEEEEecCCceeeeeEEEeeccccc-ccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEE
Confidence 345789999999999997643 2 23 89998764221 224556789999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 499 IYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
|||+|+||+|.++|..... ..|+||.++|+|++.++.+||+|||+++.-......
T Consensus 239 vmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~~~~ 318 (474)
T KOG0194|consen 239 VMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQYVMK 318 (474)
T ss_pred EEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEeCccccccCCcceeec
Confidence 9999999999999976431 124599999999999999999999999864321111
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
...-.-...|+||| |+.++|||||||++||+.+ |..|+...... .+........ -+.+.+. . .
T Consensus 319 ~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~----~v~~kI~~~~--~r~~~~~-~---~ 388 (474)
T KOG0194|consen 319 KFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNY----EVKAKIVKNG--YRMPIPS-K---T 388 (474)
T ss_pred cccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHH----HHHHHHHhcC--ccCCCCC-C---C
Confidence 10112346899999 7899999999999999999 88887644322 1111110111 1122111 1 1
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
...+..++.+||..+|++||||.++.+.+.......
T Consensus 389 p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~ 424 (474)
T KOG0194|consen 389 PKELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKK 424 (474)
T ss_pred HHHHHHHHHHhccCChhhccCHHHHHHHHHHHHhcc
Confidence 224556667999999999999999999988765543
|
|
| >cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=292.87 Aligned_cols=225 Identities=25% Similarity=0.421 Sum_probs=164.9
Q ss_pred cCCcCcceeecccCeEEEEEEe------CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHA 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~------~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~ 493 (667)
++|...+.||+|+||.||+|.. ..+..||||++..... ....+.+.+|++++.++ +|||||+++|+|...
T Consensus 7 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~ 83 (338)
T cd05102 7 DRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGAT---ASEHKALMSELKILIHIGNHLNVVNLLGACTKP 83 (338)
T ss_pred hHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccc---hHHHHHHHHHHHHHHHhccCcceeeEEeEecCC
Confidence 5688889999999999999964 2346799998864322 22345789999999999 899999999998764
Q ss_pred C-ceEEEEEecCCCChHHHhcccc--------------------------------------------------------
Q 042735 494 R-HSILIYEYLKRGSLATNLSNDA-------------------------------------------------------- 516 (667)
Q Consensus 494 ~-~~~lv~ey~~~g~L~~~l~~~~-------------------------------------------------------- 516 (667)
+ ..++||||+++|+|.+++....
T Consensus 84 ~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (338)
T cd05102 84 NGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQET 163 (338)
T ss_pred CCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhc
Confidence 4 5789999999999988775321
Q ss_pred ------------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC--ccccccccccc
Q 042735 517 ------------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYV 564 (667)
Q Consensus 517 ------------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~--~~~~~Gt~~y~ 564 (667)
...|.||||+|||++.++.+||+|||+++........ .....+|+.||
T Consensus 164 ~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~ 243 (338)
T cd05102 164 DDLWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWM 243 (338)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCcccc
Confidence 0113399999999999999999999999865432221 12345678899
Q ss_pred CCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhc
Q 042735 565 APD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSC 637 (667)
Q Consensus 565 aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 637 (667)
||| |+.++|||||||++|||+| |+.||..... ..... ........+..+.. ....+.+++.+|
T Consensus 244 aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~---~~~~~-~~~~~~~~~~~~~~------~~~~l~~li~~c 313 (338)
T cd05102 244 APESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQI---NEEFC-QRLKDGTRMRAPEN------ATPEIYRIMLAC 313 (338)
T ss_pred CcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCc---cHHHH-HHHhcCCCCCCCCC------CCHHHHHHHHHH
Confidence 999 5789999999999999997 9999764221 11111 11111111111111 122467888999
Q ss_pred cccCCCCCCCHHHHHHHHHHh
Q 042735 638 LDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 638 l~~~p~~RPt~~ev~~~l~~~ 658 (667)
|+.+|++|||+.|+++.|...
T Consensus 314 l~~dp~~RPs~~el~~~l~~~ 334 (338)
T cd05102 314 WQGDPKERPTFSALVEILGDL 334 (338)
T ss_pred ccCChhhCcCHHHHHHHHHHH
Confidence 999999999999999988754
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V |
| >KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=265.69 Aligned_cols=238 Identities=21% Similarity=0.327 Sum_probs=187.9
Q ss_pred HHHHHHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCC---Cch-HHhHHHHHHHHHHHHhcC-CCCeeEEEE
Q 042735 415 EIIRAINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLP---SDQ-IADQKEFFAEIEALTKIR-HRNIVKFYG 488 (667)
Q Consensus 415 ~~~~~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~---~~~-~~~~~~~~~E~~~l~~l~-H~niv~~~g 488 (667)
+-......|+..+++|+|..++|.++.. +++..+|||++..... +.. .+-.+.-.+|+.+++++. ||+|+++.+
T Consensus 11 aa~~fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D 90 (411)
T KOG0599|consen 11 AAKGFYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQD 90 (411)
T ss_pred hHhhHHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeee
Confidence 3344567888999999999999998854 5678899998754322 111 222345678999999986 999999999
Q ss_pred EEEeCCceEEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEeccccc
Q 042735 489 FCSHARHSILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIA 544 (667)
Q Consensus 489 ~~~~~~~~~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla 544 (667)
+|..+...++|+|.|+.|.|+++|.+.-. ..|.|+||+|||+|+++++||+|||+|
T Consensus 91 ~yes~sF~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILlddn~~i~isDFGFa 170 (411)
T KOG0599|consen 91 VYESDAFVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILLDDNMNIKISDFGFA 170 (411)
T ss_pred eccCcchhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheeeccccceEEecccee
Confidence 99999999999999999999999865311 123499999999999999999999999
Q ss_pred ccccCCCCCcccccccccccCCC------------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhcccc
Q 042735 545 KFLKPDSSNWSALVGTYRYVAPD------------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612 (667)
Q Consensus 545 ~~~~~~~~~~~~~~Gt~~y~aPE------------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~ 612 (667)
..+.++. ..+..||||+|+||| |...+|.||.|||||.++.|.+||..-.. -..++.++
T Consensus 171 ~~l~~Ge-kLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQ--------mlMLR~Im 241 (411)
T KOG0599|consen 171 CQLEPGE-KLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQ--------MLMLRMIM 241 (411)
T ss_pred eccCCch-hHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHH--------HHHHHHHH
Confidence 9887654 356789999999999 66789999999999999999999742111 11223334
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 613 DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.....-..+++.+...++.+++.+|++.||.+|-|+.|+++|.||+...
T Consensus 242 eGkyqF~speWadis~~~KdLIsrlLqVdp~~Ritake~LaHpff~q~~ 290 (411)
T KOG0599|consen 242 EGKYQFRSPEWADISATVKDLISRLLQVDPTKRITAKEALAHPFFIQIA 290 (411)
T ss_pred hcccccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhcChHHHHHH
Confidence 4445555566666667788999999999999999999999999996543
|
|
| >KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=291.30 Aligned_cols=220 Identities=26% Similarity=0.485 Sum_probs=171.7
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
.+......||.|.||.||.|.|+. .-.||||.++. +....++|.+|+++|+.++|||+|+++|+|..+...|||
T Consensus 267 tdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKE-----DtMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIi 341 (1157)
T KOG4278|consen 267 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-----DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYII 341 (1157)
T ss_pred hheeeeeccCCCcccceeeeeeeccceeeehhhhhh-----cchhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEE
Confidence 355667889999999999999865 55799998864 235567899999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 500 YEYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
.|||..|+|.++|++.. ...|.||.++|+|+.++..+||+|||++|++..+.
T Consensus 342 TEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDT-- 419 (1157)
T KOG4278|consen 342 TEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDT-- 419 (1157)
T ss_pred EecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccchhhhhcCCc--
Confidence 99999999999987532 11244999999999999999999999999987553
Q ss_pred ccccccc---ccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 554 WSALVGT---YRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 554 ~~~~~Gt---~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
+++..|. +.|.||| |..|+|||+|||+|||+.| |-.||..++. ..+.+.+........++
T Consensus 420 YTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidl---------SqVY~LLEkgyRM~~Pe- 489 (1157)
T KOG4278|consen 420 YTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDL---------SQVYGLLEKGYRMDGPE- 489 (1157)
T ss_pred eecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCccH---------HHHHHHHhccccccCCC-
Confidence 3444453 6899999 4679999999999999998 7777643321 11112222222111111
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
++...+.++|++||+.+|.+||+++||-+.++..
T Consensus 490 -GCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtm 523 (1157)
T KOG4278|consen 490 -GCPPKVYELMRACWNWSPSDRPSFAEIHQAFETM 523 (1157)
T ss_pred -CCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHH
Confidence 3445788999999999999999999998776543
|
|
| >KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=283.57 Aligned_cols=238 Identities=24% Similarity=0.344 Sum_probs=172.0
Q ss_pred cCCcCcceeecccCeEEEEEE-eCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC--CceE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA--RHSI 497 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~--~~~~ 497 (667)
+.|+..+.||+|.||.||+|+ ..+|+.||+|++..... +........|||.+|++++|||||++.|...+. ..+|
T Consensus 117 ~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~--~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siY 194 (560)
T KOG0600|consen 117 DSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNE--KEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIY 194 (560)
T ss_pred HHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccC--CCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEE
Confidence 456777889999999999996 57799999999875432 223345678999999999999999999998876 6899
Q ss_pred EEEEecCCCChHHHhccc-------------------------cCCcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 498 LIYEYLKRGSLATNLSND-------------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~-------------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
||+|||+. ||.-.+... ....|.|||++|||||.+|.+||+|||+|+++.....
T Consensus 195 lVFeYMdh-DL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~ 273 (560)
T KOG0600|consen 195 LVFEYMDH-DLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGS 273 (560)
T ss_pred EEEecccc-hhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCCCEEeccccceeeccCCCC
Confidence 99999996 665554432 1223559999999999999999999999998765543
Q ss_pred -CcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC---------ChhhhhhhhccccC--
Q 042735 553 -NWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP---------SPSVINMRLDEMLD-- 613 (667)
Q Consensus 553 -~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~---------~~~~~~~~~~~~~~-- 613 (667)
.+|..+-|..|-||| |+.++|+||.||||.||++|++.+.....+.. .+....+....+-.
T Consensus 274 ~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~ 353 (560)
T KOG0600|consen 274 APYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHAT 353 (560)
T ss_pred cccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccCCccc
Confidence 366677899999999 89999999999999999999987642221111 01000000000000
Q ss_pred -CCCCCCCCchH-----HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 614 -PRLPPPSPDVQ-----GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 614 -~~~~~~~~~~~-----~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.....+..... ......++++...|..||++|.|+.+++++-+|.+.-
T Consensus 354 ~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~seyF~t~p 407 (560)
T KOG0600|consen 354 IFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQSEYFTTEP 407 (560)
T ss_pred ccCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhcCcccccCC
Confidence 00001111111 1123456777788999999999999999999985443
|
|
| >PLN00034 mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=292.28 Aligned_cols=229 Identities=22% Similarity=0.340 Sum_probs=169.0
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|+.. +++.||||++.... .....+.+.+|++++++++|||||++++++.+.+..++|
T Consensus 74 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 150 (353)
T PLN00034 74 SELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNH---EDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVL 150 (353)
T ss_pred HHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCC---cHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEE
Confidence 34556678999999999999864 67899999985432 223346789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcc--------------------ccCCcccccccCCeeecCCCceEEecccccccccCCCCCcccccc
Q 042735 500 YEYLKRGSLATNLSN--------------------DAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~--------------------~~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~G 559 (667)
|||+++|+|...... .....|.||||+|||++.++.+||+|||+++.............|
T Consensus 151 ~e~~~~~~L~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~g 230 (353)
T PLN00034 151 LEFMDGGSLEGTHIADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVG 230 (353)
T ss_pred EecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccceeccccccccccccc
Confidence 999999998543211 112235599999999999999999999999876543333345679
Q ss_pred cccccCCCCC-----------CCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 560 TYRYVAPDYR-----------KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 560 t~~y~aPE~~-----------~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
|..|+|||+. .++|||||||++|||++|+.||...... ....... .......+..+. . ...
T Consensus 231 t~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~-~~~~~~~-~~~~~~~~~~~~---~---~~~ 302 (353)
T PLN00034 231 TIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQG-DWASLMC-AICMSQPPEAPA---T---ASR 302 (353)
T ss_pred CccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCc-cHHHHHH-HHhccCCCCCCC---c---cCH
Confidence 9999999942 3799999999999999999998622110 0000000 000000111111 1 122
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
++.+++.+||+.+|++|||+.|++++.|+..-
T Consensus 303 ~l~~li~~~l~~~P~~Rpt~~ell~hp~~~~~ 334 (353)
T PLN00034 303 EFRHFISCCLQREPAKRWSAMQLLQHPFILRA 334 (353)
T ss_pred HHHHHHHHHccCChhhCcCHHHHhcCcccccC
Confidence 46788889999999999999999999887653
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=293.93 Aligned_cols=317 Identities=25% Similarity=0.263 Sum_probs=267.4
Q ss_pred CCCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEE
Q 042735 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVL 79 (667)
Q Consensus 1 ~L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L 79 (667)
+|++|+++++.+|.++. +|.......+|+.|+|.+|.|+.+..+++..++.|+.|||+.|.|+...-+.|.. .++++|
T Consensus 100 nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred cCCcceeeeeccchhhh-cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence 57788888888888874 5766566677888888888888777788888999999999999988544445544 779999
Q ss_pred EcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccC
Q 042735 80 ALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFF 159 (667)
Q Consensus 80 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 159 (667)
+|++|.++..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|+|...---.|.++++|+.|.|..|.+.
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc
Confidence 99999998887888888999999999999999888888899999999999999987544567899999999999999998
Q ss_pred CccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCccccc
Q 042735 160 GEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239 (667)
Q Consensus 160 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 239 (667)
..-.+.|..|.++++|+|..|++...-...+.+|+.|+.|+||+|.+..+-++.+...++|++|+|++|+++...++.|.
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH
Confidence 88888999999999999999999877777888999999999999999988889999999999999999999988888999
Q ss_pred CCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccch---hhhcCCCCCEEECcCCCCCCcCcc-cccCCcc
Q 042735 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPK---ELGKLVQLSELELSHNFLGREIPS-QICSMEC 315 (667)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~---~l~~l~~L~~L~l~~n~l~~~ip~-~~~~~~~ 315 (667)
.|..|+.|+|++|.++..-...|..+++|+.|||++|.+...+.+ .|..|++|+.|++.+|++ +.||. .+.+++.
T Consensus 339 ~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql-k~I~krAfsgl~~ 417 (873)
T KOG4194|consen 339 VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL-KSIPKRAFSGLEA 417 (873)
T ss_pred HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee-eecchhhhccCcc
Confidence 999999999999999887778888899999999999988766654 466788899999999988 44553 3444555
Q ss_pred cccc
Q 042735 316 CEVF 319 (667)
Q Consensus 316 ~~~~ 319 (667)
++-+
T Consensus 418 LE~L 421 (873)
T KOG4194|consen 418 LEHL 421 (873)
T ss_pred ccee
Confidence 5444
|
|
| >cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=284.64 Aligned_cols=233 Identities=21% Similarity=0.298 Sum_probs=171.5
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|+.. ++..+|+|.+.... .....+.+.+|++++++++|||||++++++...+..++|
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 81 (331)
T cd06649 5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEI---KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC 81 (331)
T ss_pred ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeeccc---CHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence 57889999999999999999865 57788998876432 123346799999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||+++|+|.+++.... ...|.||||+||+++.++.+||+|||+++..... ..
T Consensus 82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~ 159 (331)
T cd06649 82 MEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS--MA 159 (331)
T ss_pred eecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCccccccccc--cc
Confidence 99999999988764321 1235599999999999999999999999865432 22
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhh-------h----------------
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVI-------N---------------- 605 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~-------~---------------- 605 (667)
....||+.|+||| ++.++|||||||++|||+||+.||............. .
T Consensus 160 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (331)
T cd06649 160 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRP 239 (331)
T ss_pred ccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccccCCccccCccccccccc
Confidence 3467999999999 4678999999999999999999985221100000000 0
Q ss_pred ---------------hhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 606 ---------------MRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 606 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.....+.....+.... .....++.+++.+||+.||++|||+.|++++.|+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~~~~~~ 307 (331)
T cd06649 240 VSGHGMDSRPAMAIFELLDYIVNEPPPKLPN--GVFTPDFQEFVNKCLIKNPAERADLKMLMNHTFIKRS 307 (331)
T ss_pred ccccccccccchhHHHHHHHHHhCCCcCCCC--ccccHHHHHHHHHHccCCcccCCCHHHHhcChHHhhc
Confidence 0000000000000000 0112357788999999999999999999999998643
|
Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=280.41 Aligned_cols=231 Identities=20% Similarity=0.265 Sum_probs=171.2
Q ss_pred CcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|+..+.||+|+||.||+|.. .+++.+|||++...... .......+.+|++++++++||||+++++++.+.+..++|||
T Consensus 2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e 80 (285)
T cd05631 2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIK-KRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLT 80 (285)
T ss_pred ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhh-hhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEE
Confidence 56778999999999999975 56889999987643211 11223467899999999999999999999999999999999
Q ss_pred ecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 502 YLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 502 y~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
|+++|+|...+.... ...|.||||+|||++.++.+||+|||+++...... ...
T Consensus 81 ~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~-~~~ 159 (285)
T cd05631 81 IMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGE-TVR 159 (285)
T ss_pred ecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCC-eec
Confidence 999999987663211 11234999999999999999999999998754322 233
Q ss_pred cccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 556 ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
...||+.||||| |+.++|||||||++|||+||+.||............ .. ......... ... ....
T Consensus 160 ~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~-~~---~~~~~~~~~-~~~---~s~~ 231 (285)
T cd05631 160 GRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEV-DR---RVKEDQEEY-SEK---FSED 231 (285)
T ss_pred CCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHH-HH---HhhcccccC-Ccc---CCHH
Confidence 457999999999 577899999999999999999998643221110011 11 111111110 011 1124
Q ss_pred HHHHHHhccccCCCCCCC-----HHHHHHHHHHhhhhhc
Q 042735 630 IMEVAFSCLDVSPESRPT-----MQTITQQLLFSLVYFS 663 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RPt-----~~ev~~~l~~~~~~~~ 663 (667)
+.+++.+||+.+|++||+ +++++++.||....+.
T Consensus 232 ~~~li~~~l~~~P~~R~~~~~~~~~~~~~h~~~~~~~~~ 270 (285)
T cd05631 232 AKSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKNINFK 270 (285)
T ss_pred HHHHHHHHhhcCHHHhcCCCCCCHHHHhcCHhhcCCCHH
Confidence 567888999999999997 9999999998766554
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i |
| >cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=289.48 Aligned_cols=222 Identities=20% Similarity=0.300 Sum_probs=168.0
Q ss_pred ceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCC
Q 042735 427 YCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKR 505 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~ 505 (667)
+.||+|+||.||+|+. .+++.+|+|++...... .......+.+|++++++++||||+++++++...+..++||||+++
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~ 79 (323)
T cd05571 1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVII-AKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANG 79 (323)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhh-hhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCC
Confidence 3689999999999976 56788999988643211 112345678999999999999999999999999999999999999
Q ss_pred CChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcccccccc
Q 042735 506 GSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561 (667)
Q Consensus 506 g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~ 561 (667)
|+|.+.+.... ...|.||||+||+++.++.+||+|||+++............+||+
T Consensus 80 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~ 159 (323)
T cd05571 80 GELFFHLSRERVFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTP 159 (323)
T ss_pred CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCcccceecCc
Confidence 99988775422 112449999999999999999999999986433333344578999
Q ss_pred cccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHH
Q 042735 562 RYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF 635 (667)
Q Consensus 562 ~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (667)
.|+||| |+.++|||||||++|||+||+.||..... ......... -+..++... ...+.+++.
T Consensus 160 ~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~----~~~~~~~~~--~~~~~p~~~------~~~~~~li~ 227 (323)
T cd05571 160 EYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH----EKLFELILM--EEIRFPRTL------SPEAKSLLA 227 (323)
T ss_pred cccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCH----HHHHHHHHc--CCCCCCCCC------CHHHHHHHH
Confidence 999999 57789999999999999999999853221 011111110 111222211 124567888
Q ss_pred hccccCCCCCC-----CHHHHHHHHHHhhhh
Q 042735 636 SCLDVSPESRP-----TMQTITQQLLFSLVY 661 (667)
Q Consensus 636 ~Cl~~~p~~RP-----t~~ev~~~l~~~~~~ 661 (667)
+||+.||++|| ++.+++++.||....
T Consensus 228 ~~L~~dP~~R~~~~~~~~~~ll~h~~f~~~~ 258 (323)
T cd05571 228 GLLKKDPKQRLGGGPEDAKEIMEHRFFASIN 258 (323)
T ss_pred HHccCCHHHcCCCCCCCHHHHHcCCCcCCCC
Confidence 99999999999 899999999886543
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be |
| >KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=283.41 Aligned_cols=228 Identities=24% Similarity=0.374 Sum_probs=170.7
Q ss_pred CCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
...+.+.||+|.||.|..++...+..||||+++.... ...+++|.+||++|++++|||||+++|+|..++.+.+|+|
T Consensus 539 ~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~---~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~E 615 (807)
T KOG1094|consen 539 RLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDAT---KNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITE 615 (807)
T ss_pred heehhhhhcCcccceeEEEEecCceEEEEeecCcccc---hhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHH
Confidence 3456678999999999999998889999999876432 2345789999999999999999999999999999999999
Q ss_pred ecCCCChHHHhccccCCc--------------------------ccccccCCeeecCCCceEEecccccccccCCCCC--
Q 042735 502 YLKRGSLATNLSNDAAAE--------------------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN-- 553 (667)
Q Consensus 502 y~~~g~L~~~l~~~~~~~--------------------------~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~-- 553 (667)
||++|+|.+++..+.+.. |.|+.+.|||+|.++++||+|||++|.+-.....
T Consensus 616 YmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~v 695 (807)
T KOG1094|consen 616 YMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRV 695 (807)
T ss_pred HHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCcccccccccCCceee
Confidence 999999999997652211 2399999999999999999999999965433221
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHh--CCCCCCCCccCCCChhhhhhhhccccCCCC-CCCCCchH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK--GKHPRGFVSSILPSPSVINMRLDEMLDPRL-PPPSPDVQ 624 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt--G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 624 (667)
....+=..+||||| ++.++|||+|||++||+++ .+.||+.... ..+.+ ...++++..- ..-.+...
T Consensus 696 qgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~----e~vve-n~~~~~~~~~~~~~l~~P~ 770 (807)
T KOG1094|consen 696 QGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTD----EQVVE-NAGEFFRDQGRQVVLSRPP 770 (807)
T ss_pred ecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhH----HHHHH-hhhhhcCCCCcceeccCCC
Confidence 11223357999999 7899999999999999876 6678753221 11111 1112222110 00000111
Q ss_pred HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.+...+.+++.+||..+.++|||++++...|..
T Consensus 771 ~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~ 803 (807)
T KOG1094|consen 771 ACPQGLYELMLRCWRRESEQRPSFEQLHLFLQE 803 (807)
T ss_pred cCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHH
Confidence 223467789999999999999999999887764
|
|
| >KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=290.70 Aligned_cols=225 Identities=24% Similarity=0.372 Sum_probs=174.8
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
.-|..++.||.|+-|.|..|+. .+|+.+|||.+.+..... ......+.+||.+|+-+.||||+++|+++.+..++|+|
T Consensus 12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s-~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylv 90 (786)
T KOG0588|consen 12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELS-SSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLV 90 (786)
T ss_pred cceeccccccCCCCceehhhhcccccceeEEEeeccccccc-cccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEE
Confidence 4567788899999999999976 678999999987653211 12234577999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccCC------------------------cccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 500 YEYLKRGSLATNLSNDAAA------------------------EELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~~------------------------~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
.||+++|.|++++..+... -|.|+||+|+|||..+++||+|||+|....+ .....
T Consensus 91 lEyv~gGELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~-gklLe 169 (786)
T KOG0588|consen 91 LEYVPGGELFDYLVRKGPLPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMASLEVP-GKLLE 169 (786)
T ss_pred EEecCCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhcccCEeeeccceeecccC-Ccccc
Confidence 9999999999988654321 1349999999999999999999999987554 34566
Q ss_pred cccccccccCCC------C-CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCC--CCCCCCchHHH
Q 042735 556 ALVGTYRYVAPD------Y-RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPR--LPPPSPDVQGK 626 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~-~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 626 (667)
+.||+|.|.||| | ..++||||.|||||.|+||+.||+... + ...+..+-... +|...+.
T Consensus 170 TSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdN-i-------r~LLlKV~~G~f~MPs~Is~---- 237 (786)
T KOG0588|consen 170 TSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDN-I-------RVLLLKVQRGVFEMPSNISS---- 237 (786)
T ss_pred ccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCcc-H-------HHHHHHHHcCcccCCCcCCH----
Confidence 789999999999 4 468999999999999999999997221 1 11111111111 2222221
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
+..+++.+++..||++|-|++||.+|.|.++..
T Consensus 238 --eaQdLLr~ml~VDp~~RiT~~eI~kHP~l~g~~ 270 (786)
T KOG0588|consen 238 --EAQDLLRRMLDVDPSTRITTEEILKHPFLSGYT 270 (786)
T ss_pred --HHHHHHHHHhccCccccccHHHHhhCchhhcCC
Confidence 234667789999999999999999999987643
|
|
| >cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=288.41 Aligned_cols=221 Identities=24% Similarity=0.343 Sum_probs=166.9
Q ss_pred ceeecccCeEEEEEEe----CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEe
Q 042735 427 YCIGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEY 502 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~----~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey 502 (667)
+.||+|+||.||+++. ..++.+|||.+..............+.+|++++++++||||+++++++..++..++||||
T Consensus 2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~ 81 (323)
T cd05584 2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY 81 (323)
T ss_pred ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence 5799999999999975 356789999876422111122335678999999999999999999999999999999999
Q ss_pred cCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccccc
Q 042735 503 LKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV 558 (667)
Q Consensus 503 ~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~ 558 (667)
+++|+|.+.+..... ..|.||||+|||++.++.+||+|||+++.............
T Consensus 82 ~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~ 161 (323)
T cd05584 82 LSGGELFMHLEREGIFMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTFC 161 (323)
T ss_pred CCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCCcccccC
Confidence 999999887753221 12349999999999999999999999985443333334568
Q ss_pred ccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCC--CCCCCCCchHHHHHHH
Q 042735 559 GTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLISI 630 (667)
Q Consensus 559 Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 630 (667)
||+.|+||| ++.++|||||||++|||+||+.||...... .. ...+... .+++..+ ..+
T Consensus 162 gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~----~~----~~~~~~~~~~~~~~~~------~~~ 227 (323)
T cd05584 162 GTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRK----KT----IDKILKGKLNLPPYLT------PEA 227 (323)
T ss_pred CCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCHH----HH----HHHHHcCCCCCCCCCC------HHH
Confidence 999999999 467899999999999999999998632211 11 1111111 1222111 245
Q ss_pred HHHHHhccccCCCCCC-----CHHHHHHHHHHhhhh
Q 042735 631 MEVAFSCLDVSPESRP-----TMQTITQQLLFSLVY 661 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~ 661 (667)
.+++.+||+.+|++|| ++++++++.|+....
T Consensus 228 ~~li~~~l~~~p~~R~~~~~~~~~~l~~h~~~~~~~ 263 (323)
T cd05584 228 RDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRHVN 263 (323)
T ss_pred HHHHHHHcccCHhHcCCCCCCCHHHHhcCCCcCCCC
Confidence 6788899999999999 899999998876543
|
Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in |
| >cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=290.04 Aligned_cols=232 Identities=21% Similarity=0.291 Sum_probs=173.2
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|+.. +++.||||++..... ......+.+.+|++++.+++||||+++++++.+++..++|
T Consensus 1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv 79 (333)
T cd05600 1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLL-FKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLA 79 (333)
T ss_pred CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHH-hhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEE
Confidence 36888899999999999999875 578899998864321 1122345688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 500 YEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
|||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++.... ...
T Consensus 80 ~e~~~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~---~~~ 156 (333)
T cd05600 80 MEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT---YAN 156 (333)
T ss_pred EeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCccccc---ccC
Confidence 999999999988753211 12349999999999999999999999986543 234
Q ss_pred cccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhcccc-CCCCCCCCCchHHHHH
Q 042735 556 ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML-DPRLPPPSPDVQGKLI 628 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 628 (667)
...||+.|+||| |+.++|||||||++|||+||+.||............. ...... .+....+. .....
T Consensus 157 ~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~--~~~~~~~~~~~~~~~---~~~s~ 231 (333)
T cd05600 157 SVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLK--YWKETLQRPVYDDPR---FNLSD 231 (333)
T ss_pred CcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHH--hccccccCCCCCccc---cccCH
Confidence 567999999999 5778999999999999999999986322110000000 000111 11111000 01123
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
++.+++.+||..+|++||+++|++++.|+..+.
T Consensus 232 ~~~~li~~~l~~~~~rr~s~~~ll~h~~~~~~~ 264 (333)
T cd05600 232 EAWDLITKLINDPSRRFGSLEDIKNHPFFKEVD 264 (333)
T ss_pred HHHHHHHHHhhChhhhcCCHHHHHhCcccCCCC
Confidence 466788899999999999999999999987653
|
Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. |
| >cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=280.33 Aligned_cols=227 Identities=22% Similarity=0.361 Sum_probs=162.0
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-----------------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCe
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-----------------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-----------------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~ni 483 (667)
++|...+.||+|+||.||+|..++ +..+|+|.+..... ......|.+|++++.+++||||
T Consensus 5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~ni 81 (304)
T cd05096 5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDAN---KNARNDFLKEVKILSRLKDPNI 81 (304)
T ss_pred hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCC---HHHHHHHHHHHHHHhhcCCCCe
Confidence 467788899999999999997532 23699998765322 2335679999999999999999
Q ss_pred eEEEEEEEeCCceEEEEEecCCCChHHHhcccc-------------------------------------------CCcc
Q 042735 484 VKFYGFCSHARHSILIYEYLKRGSLATNLSNDA-------------------------------------------AAEE 520 (667)
Q Consensus 484 v~~~g~~~~~~~~~lv~ey~~~g~L~~~l~~~~-------------------------------------------~~~~ 520 (667)
|+++|++.+.+..++||||+++|+|.+++.... ...|
T Consensus 82 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH 161 (304)
T cd05096 82 IRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVH 161 (304)
T ss_pred eEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCccc
Confidence 999999999999999999999999988764321 0113
Q ss_pred cccccCCeeecCCCceEEecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHhC--CCC
Q 042735 521 LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKG--KHP 590 (667)
Q Consensus 521 ~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG--~~p 590 (667)
.||||+|||++.++.+||+|||+++....... ......++..||||| ++.++|||||||++|||+++ ..|
T Consensus 162 ~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p 241 (304)
T cd05096 162 RDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQP 241 (304)
T ss_pred cCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCC
Confidence 39999999999999999999999986543221 112345678999999 46789999999999999974 556
Q ss_pred CCCCccCCCChhhhhhhhcc--ccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 591 RGFVSSILPSPSVINMRLDE--MLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
+................... ......++.. ...+.+++.+||+.+|++||||+||.+.|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~li~~cl~~~p~~RPs~~~i~~~l~ 303 (304)
T cd05096 242 YGELTDEQVIENAGEFFRDQGRQVYLFRPPPC------PQGLYELMLQCWSRDCRERPSFSDIHAFLT 303 (304)
T ss_pred CCcCCHHHHHHHHHHHhhhccccccccCCCCC------CHHHHHHHHHHccCCchhCcCHHHHHHHHh
Confidence 54322110000000000000 0001111111 225678889999999999999999988764
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k |
| >PTZ00263 protein kinase A catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=290.01 Aligned_cols=228 Identities=23% Similarity=0.298 Sum_probs=173.2
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|+.. +++.+|||.+..... ......+.+.+|+.++++++|||||++++++.+++..++
T Consensus 17 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l 95 (329)
T PTZ00263 17 LSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREI-LKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYF 95 (329)
T ss_pred chheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHH-hhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEE
Confidence 367888999999999999999875 578899998754211 111234568899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||+++|+|.+.+..... ..|.||||+|||++.++.+||+|||+++..... .
T Consensus 96 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~---~ 172 (329)
T PTZ00263 96 LLEFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDR---T 172 (329)
T ss_pred EEcCCCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCCCEEEeeccCceEcCCC---c
Confidence 9999999999887754321 123499999999999999999999999875432 2
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
...+||+.|+||| ++.++|||||||++|||+||+.||...... ... ..+.......+.. . ..
T Consensus 173 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~----~~~----~~i~~~~~~~p~~-~---~~ 240 (329)
T PTZ00263 173 FTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPF----RIY----EKILAGRLKFPNW-F---DG 240 (329)
T ss_pred ceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCHH----HHH----HHHhcCCcCCCCC-C---CH
Confidence 3467999999999 467899999999999999999998532211 011 1111111111110 1 12
Q ss_pred HHHHHHHhccccCCCCCCC-----HHHHHHHHHHhhhhhc
Q 042735 629 SIMEVAFSCLDVSPESRPT-----MQTITQQLLFSLVYFS 663 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt-----~~ev~~~l~~~~~~~~ 663 (667)
.+.+++.+||+.||++||+ +++++.|.||....++
T Consensus 241 ~~~~li~~~L~~dP~~R~~~~~~~~~~ll~hp~f~~~~~~ 280 (329)
T PTZ00263 241 RARDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFHGANWD 280 (329)
T ss_pred HHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCccCCCCHH
Confidence 3567888999999999997 7999999998765443
|
|
| >KOG0589 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=284.67 Aligned_cols=224 Identities=24% Similarity=0.387 Sum_probs=177.6
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc-eE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH-SI 497 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~-~~ 497 (667)
.++|+..+.+|+|+||.++.++. .++..+++|++.-..... ..++...+|+.++++++|||||.+++.+.+.+. .+
T Consensus 3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~--~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~ 80 (426)
T KOG0589|consen 3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTE--PERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLC 80 (426)
T ss_pred cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCc--hhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEE
Confidence 35778889999999999999975 456789999887544332 334578899999999999999999999999888 99
Q ss_pred EEEEecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 498 LIYEYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
|||+||+||++++.+.... ...|+|||++||+++.++.|||+|||+||.+.+..
T Consensus 81 Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~ 160 (426)
T KOG0589|consen 81 IVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPED 160 (426)
T ss_pred EEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhccccCceeecchhhhhhcCCch
Confidence 9999999999998775433 12245999999999999999999999999998877
Q ss_pred CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
....+.+|||.||.|| |..|+|+||+||++|||++=+++|...+.. ...........+| ++..
T Consensus 161 ~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~----~Li~ki~~~~~~P-lp~~------ 229 (426)
T KOG0589|consen 161 SLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMS----ELILKINRGLYSP-LPSM------ 229 (426)
T ss_pred hhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccchH----HHHHHHhhccCCC-CCcc------
Confidence 6777889999999999 899999999999999999999998744321 1122222222222 2221
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
...++..++..|++.+|+.||++.+++.+..
T Consensus 230 ys~el~~lv~~~l~~~P~~RPsa~~LL~~P~ 260 (426)
T KOG0589|consen 230 YSSELRSLVKSMLRKNPEHRPSALELLRRPH 260 (426)
T ss_pred ccHHHHHHHHHHhhcCCccCCCHHHHhhChh
Confidence 2234556777999999999999999998743
|
|
| >cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=288.01 Aligned_cols=224 Identities=25% Similarity=0.399 Sum_probs=164.6
Q ss_pred cCCcCcceeecccCeEEEEEEe------CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHA 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~------~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~ 493 (667)
++|+..+.||+|+||.||+|.. ..+..||||+++.... ....+.+.+|+++++.+ +|||||+++|+|.++
T Consensus 35 ~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~---~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~ 111 (375)
T cd05104 35 NRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAH---LTEREALMSELKVLSYLGNHINIVNLLGACTVG 111 (375)
T ss_pred HHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcC---cHHHHHHHHHHHHHHHhcCCcceeeeeeeeccC
Confidence 4677889999999999999963 2355799998864322 22345789999999999 799999999999999
Q ss_pred CceEEEEEecCCCChHHHhcccc---------------------------------------------------------
Q 042735 494 RHSILIYEYLKRGSLATNLSNDA--------------------------------------------------------- 516 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~--------------------------------------------------------- 516 (667)
+..++||||+++|+|.+++....
T Consensus 112 ~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (375)
T cd05104 112 GPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRS 191 (375)
T ss_pred CcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccccccccccccccc
Confidence 99999999999999988774311
Q ss_pred ------------------------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC-
Q 042735 517 ------------------------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN- 553 (667)
Q Consensus 517 ------------------------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~- 553 (667)
...|.||||+|||++.++.+||+|||+++........
T Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~ 271 (375)
T cd05104 192 GSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYV 271 (375)
T ss_pred ceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCccceeccCccccc
Confidence 0113399999999999999999999999865433221
Q ss_pred -cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 554 -WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 554 -~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
.....++..|+||| |+.++|||||||++|||+| |+.||..... .............+..+...
T Consensus 272 ~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~----- 342 (375)
T cd05104 272 VKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPV----DSKFYKMIKEGYRMLSPECA----- 342 (375)
T ss_pred ccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCc----hHHHHHHHHhCccCCCCCCC-----
Confidence 11234567899999 5779999999999999998 8888753211 11100111111111111111
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..++.+++.+||+.||++||||.||++.+..
T Consensus 343 -~~~l~~li~~cl~~dP~~RPs~~eil~~l~~ 373 (375)
T cd05104 343 -PSEMYDIMKSCWDADPLKRPTFKQIVQLIEQ 373 (375)
T ss_pred -CHHHHHHHHHHccCChhHCcCHHHHHHHHHh
Confidence 1246788899999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce |
| >cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=285.12 Aligned_cols=227 Identities=22% Similarity=0.314 Sum_probs=172.6
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|... +++.+|+|++..... ......+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 79 (291)
T cd05612 1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEV-IRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYML 79 (291)
T ss_pred CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHH-hhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEE
Confidence 36788899999999999999864 678899998754211 1112345688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 500 YEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
|||+++|+|.+++..... ..|.||||+|||++.++.+||+|||+++..... ..
T Consensus 80 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~---~~ 156 (291)
T cd05612 80 MEYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDR---TW 156 (291)
T ss_pred EeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcchhccCC---cc
Confidence 999999999887754321 123499999999999999999999999865432 23
Q ss_pred cccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 556 ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
..+||+.|+||| ++.++|||||||++|||+||+.||..... .......... ...++... ...
T Consensus 157 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~----~~~~~~i~~~--~~~~~~~~------~~~ 224 (291)
T cd05612 157 TLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNP----FGIYEKILAG--KLEFPRHL------DLY 224 (291)
T ss_pred cccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHHhC--CcCCCccC------CHH
Confidence 457999999999 57789999999999999999999853221 0111111000 11122211 124
Q ss_pred HHHHHHhccccCCCCCCC-----HHHHHHHHHHhhhhhc
Q 042735 630 IMEVAFSCLDVSPESRPT-----MQTITQQLLFSLVYFS 663 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RPt-----~~ev~~~l~~~~~~~~ 663 (667)
+.+++.+||+.||.+||+ ++|++++.|+....|.
T Consensus 225 ~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~~~~ 263 (291)
T cd05612 225 AKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFKSVDWD 263 (291)
T ss_pred HHHHHHHHcCCCHHHccCCccCCHHHHhcCccccCCCHH
Confidence 567888999999999995 9999999999765543
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt |
| >PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=289.32 Aligned_cols=227 Identities=22% Similarity=0.303 Sum_probs=171.8
Q ss_pred HcCCcCcceeecccCeEEEEEEeCC--CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPS--KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~--~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
.++|+..+.||+|+||.||+|.... +..+|+|++...... .....+.+.+|+++++.++|||||++++++.+.+..+
T Consensus 29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~ 107 (340)
T PTZ00426 29 YEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKII-KQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLY 107 (340)
T ss_pred hhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhh-hhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEE
Confidence 3578889999999999999997543 357999987532111 1123456889999999999999999999999999999
Q ss_pred EEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 498 LIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
+||||+++|+|.+.+..... ..|.||||+|||++.++.+||+|||+++.....
T Consensus 108 lv~Ey~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~--- 184 (340)
T PTZ00426 108 LVLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTR--- 184 (340)
T ss_pred EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEecCCCCeecCCC---
Confidence 99999999999988754321 123499999999999999999999999875432
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
....+||+.||||| ++.++|||||||++|||+||+.||...... .......... ...+...+
T Consensus 185 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~----~~~~~i~~~~--~~~p~~~~------ 252 (340)
T PTZ00426 185 TYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPL----LIYQKILEGI--IYFPKFLD------ 252 (340)
T ss_pred cceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHH----HHHHHHhcCC--CCCCCCCC------
Confidence 23468999999999 567899999999999999999998632211 1111111111 11222111
Q ss_pred HHHHHHHHhccccCCCCCC-----CHHHHHHHHHHhhhhh
Q 042735 628 ISIMEVAFSCLDVSPESRP-----TMQTITQQLLFSLVYF 662 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~ 662 (667)
..+.+++.+|++.+|++|+ +++|++++.||..+.|
T Consensus 253 ~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~hp~f~~~~~ 292 (340)
T PTZ00426 253 NNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEHPWFGNIDW 292 (340)
T ss_pred HHHHHHHHHHcccCHHHcCCCCCCCHHHHHcCCCcCCCCH
Confidence 1355788899999999995 8999999999876544
|
|
| >KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-33 Score=286.50 Aligned_cols=219 Identities=26% Similarity=0.398 Sum_probs=167.6
Q ss_pred CcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|...+.||.|+||.||.|+. .+.+.||||++.-.- .+..+.+..+.+|++.|.+++|||+|.|.|+|......|+|||
T Consensus 28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySG-KQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVME 106 (948)
T KOG0577|consen 28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSG-KQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVME 106 (948)
T ss_pred HHHHHHhcCCccceeEEeeccCccceeeeeeccccc-cccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHH
Confidence 55567899999999999975 567889999986432 2334557789999999999999999999999999999999999
Q ss_pred ecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 502 YLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 502 y~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
||-| +-.+.+.... ...|.|||+.|||+.+.|.||++|||-|.+..+. .+
T Consensus 107 YClG-SAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PA----ns 181 (948)
T KOG0577|consen 107 YCLG-SASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAPA----NS 181 (948)
T ss_pred HHhc-cHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCCeeeeccccchhhcCch----hc
Confidence 9975 5555443211 1124499999999999999999999999887654 46
Q ss_pred ccccccccCCC---------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 557 LVGTYRYVAPD---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 557 ~~Gt~~y~aPE---------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
++|||+||||| |+-|+||||+||++.|+..+++|...+..+- .. ..+..--.|.++ ..++ .
T Consensus 182 FvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAMS---AL--YHIAQNesPtLq--s~eW---S 251 (948)
T KOG0577|consen 182 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS---AL--YHIAQNESPTLQ--SNEW---S 251 (948)
T ss_pred ccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchHHH---HH--HHHHhcCCCCCC--Cchh---H
Confidence 89999999999 7899999999999999999999953222110 00 011111123333 2233 3
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..+..++..|+++-|.+|||.++++++.|.
T Consensus 252 ~~F~~Fvd~CLqKipqeRptse~ll~H~fv 281 (948)
T KOG0577|consen 252 DYFRNFVDSCLQKIPQERPTSEELLKHRFV 281 (948)
T ss_pred HHHHHHHHHHHhhCcccCCcHHHHhhcchh
Confidence 356678889999999999999999988764
|
|
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.6e-34 Score=291.44 Aligned_cols=225 Identities=20% Similarity=0.349 Sum_probs=172.2
Q ss_pred CcCcceeecccCeEEEEEEeCCCce-EEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAELPSKEF-LAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~~~~~-~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
+++...||.|+||.||+|..+.... .|.|++... ..+..+.|+-||+||+..+||+||++++.|+..+.+|++.|
T Consensus 34 WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetk----seEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliE 109 (1187)
T KOG0579|consen 34 WEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETK----SEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIE 109 (1187)
T ss_pred HHHHhhhcCccchhhhhhhcccchhhhhhhhhccc----chhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEe
Confidence 4455678999999999998766544 555665432 23456789999999999999999999999999999999999
Q ss_pred ecCCCChHHHhcc-------------------------ccCCcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 502 YLKRGSLATNLSN-------------------------DAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 502 y~~~g~L~~~l~~-------------------------~~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
||.||-+...+.+ .....|.|||+.|||++-+|.+|++|||++...........+
T Consensus 110 FC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~qkRDs 189 (1187)
T KOG0579|consen 110 FCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQKRDS 189 (1187)
T ss_pred ecCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEecCcEeeecccccccchhHHhhhcc
Confidence 9999987654321 112345699999999999999999999999765544445567
Q ss_pred ccccccccCCC-----------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 557 LVGTYRYVAPD-----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 557 ~~Gt~~y~aPE-----------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
+.|||+||||| |+.++|||||||+|.||..+.+|......++... .+..--.|.+..| ..
T Consensus 190 FIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRVll-----KiaKSePPTLlqP----S~ 260 (1187)
T KOG0579|consen 190 FIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLL-----KIAKSEPPTLLQP----SH 260 (1187)
T ss_pred ccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchHHHHH-----HHhhcCCCcccCc----ch
Confidence 99999999999 7889999999999999999999976433221110 1111112222222 23
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
....+.++..+|+.++|+.||+++++++|.|+..+
T Consensus 261 Ws~~F~DfLk~cL~Knp~~Rp~aaqll~Hpfv~~~ 295 (1187)
T KOG0579|consen 261 WSRSFSDFLKRCLVKNPRNRPPAAQLLKHPFVQNA 295 (1187)
T ss_pred hhhHHHHHHHHHHhcCCccCCCHHHHhhCcccccC
Confidence 34467788899999999999999999999998744
|
|
| >cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-33 Score=287.98 Aligned_cols=220 Identities=23% Similarity=0.325 Sum_probs=165.7
Q ss_pred eecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCCCC
Q 042735 429 IGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGS 507 (667)
Q Consensus 429 lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~g~ 507 (667)
||+|+||.||+|+.. ++..+|+|++...... .......+.+|++++.+++|||||++++++.+.+..++||||+++|+
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~ 79 (312)
T cd05585 1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIV-SRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGE 79 (312)
T ss_pred CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhh-hhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCc
Confidence 699999999999864 5778999987542111 12234568899999999999999999999999999999999999999
Q ss_pred hHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcccccccccc
Q 042735 508 LATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRY 563 (667)
Q Consensus 508 L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y 563 (667)
|.+.+.... ...|.||||+||+++.++.+||+|||+++............+||+.|
T Consensus 80 L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y 159 (312)
T cd05585 80 LFHHLQREGRFDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEY 159 (312)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCCccccccCCccc
Confidence 988775431 11244999999999999999999999998654333334456899999
Q ss_pred cCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhc
Q 042735 564 VAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSC 637 (667)
Q Consensus 564 ~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 637 (667)
+||| |+.++|||||||++|||+||+.||..... .......... ...++... ...+.+++.+|
T Consensus 160 ~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~----~~~~~~~~~~--~~~~~~~~------~~~~~~li~~~ 227 (312)
T cd05585 160 LAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENV----NEMYRKILQE--PLRFPDGF------DRDAKDLLIGL 227 (312)
T ss_pred CCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCH----HHHHHHHHcC--CCCCCCcC------CHHHHHHHHHH
Confidence 9999 57789999999999999999999853221 1111111110 11112111 12456788899
Q ss_pred cccCCCCCC---CHHHHHHHHHHhhhh
Q 042735 638 LDVSPESRP---TMQTITQQLLFSLVY 661 (667)
Q Consensus 638 l~~~p~~RP---t~~ev~~~l~~~~~~ 661 (667)
|+.||++|| ++.|++.+.|+....
T Consensus 228 L~~dp~~R~~~~~~~e~l~hp~~~~~~ 254 (312)
T cd05585 228 LSRDPTRRLGYNGAQEIKNHPFFSQLS 254 (312)
T ss_pred cCCCHHHcCCCCCHHHHHcCCCcCCCC
Confidence 999999997 579999998887543
|
Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl |
| >cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-32 Score=292.23 Aligned_cols=232 Identities=22% Similarity=0.316 Sum_probs=167.9
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
.|+..+.||+|+||+||+|+. .++..+|+|++...... .....+.+.+|++++++++|||||++++++.+.+..++||
T Consensus 2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~-~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~ 80 (381)
T cd05626 2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVL-NRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM 80 (381)
T ss_pred CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhh-hhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEE
Confidence 578889999999999999976 55788999998643211 1223456899999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCC-----
Q 042735 501 EYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS----- 551 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~----- 551 (667)
||+++|+|.+++.... ...|.||||+|||++.++++||+|||+++......
T Consensus 81 E~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~ 160 (381)
T cd05626 81 DYIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYY 160 (381)
T ss_pred ecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCCcccccccccccc
Confidence 9999999988775421 11234999999999999999999999986431100
Q ss_pred ------------------------------------------CCcccccccccccCCC------CCCCchHHHHHHHHHH
Q 042735 552 ------------------------------------------SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALE 583 (667)
Q Consensus 552 ------------------------------------------~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~E 583 (667)
......+||+.|+||| |+.++|||||||++||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~e 240 (381)
T cd05626 161 QKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFE 240 (381)
T ss_pred cccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHH
Confidence 0012357999999999 5778999999999999
Q ss_pred HHhCCCCCCCCccCCCChhhhhhhhcc-ccCCCCCCCCCchHHHHHHHHHHHHh--ccccCCCCCCCHHHHHHHHHHhhh
Q 042735 584 VIKGKHPRGFVSSILPSPSVINMRLDE-MLDPRLPPPSPDVQGKLISIMEVAFS--CLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 584 lltG~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
|+||+.||..... ......... ......+.... . ..++.+++.+ |+..+|..||+++|++++.||..+
T Consensus 241 lltG~~Pf~~~~~-----~~~~~~i~~~~~~~~~~~~~~-~---s~~~~dli~~ll~~~~~~~~R~~~~~~l~hp~f~~~ 311 (381)
T cd05626 241 MLVGQPPFLAPTP-----TETQLKVINWENTLHIPPQVK-L---SPEAVDLITKLCCSAEERLGRNGADDIKAHPFFSEV 311 (381)
T ss_pred HHhCCCCCcCCCH-----HHHHHHHHccccccCCCCCCC-C---CHHHHHHHHHHccCcccccCCCCHHHHhcCcccCCC
Confidence 9999999863221 111011100 00111221111 1 1133445544 777788889999999999999766
Q ss_pred hhc
Q 042735 661 YFS 663 (667)
Q Consensus 661 ~~~ 663 (667)
.+.
T Consensus 312 ~~~ 314 (381)
T cd05626 312 DFS 314 (381)
T ss_pred Chh
Confidence 543
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po |
| >cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-32 Score=284.62 Aligned_cols=223 Identities=21% Similarity=0.318 Sum_probs=168.0
Q ss_pred ceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCC
Q 042735 427 YCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKR 505 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~ 505 (667)
+.||+|+||.||+|+. .++..+|||++...... .......+.+|++++++++||||+++++++...+..++||||+++
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~ 79 (328)
T cd05593 1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVII-AKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNG 79 (328)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhh-hhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCC
Confidence 3689999999999976 46789999988643221 122345788999999999999999999999999999999999999
Q ss_pred CChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcccccccc
Q 042735 506 GSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561 (667)
Q Consensus 506 g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~ 561 (667)
|+|...+.... ...|.||||+|||++.++.+||+|||+++............+||+
T Consensus 80 g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~ 159 (328)
T cd05593 80 GELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTP 159 (328)
T ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCccCCCcccccccccCCc
Confidence 99987764321 112349999999999999999999999986433333334568999
Q ss_pred cccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHH
Q 042735 562 RYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF 635 (667)
Q Consensus 562 ~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (667)
.|+||| |+.++|||||||++|||+||+.||..... ........ ..+..++...+ ..+.+++.
T Consensus 160 ~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~----~~~~~~~~--~~~~~~p~~~~------~~~~~li~ 227 (328)
T cd05593 160 EYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH----EKLFELIL--MEDIKFPRTLS------ADAKSLLS 227 (328)
T ss_pred CccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCH----HHHHHHhc--cCCccCCCCCC------HHHHHHHH
Confidence 999999 46789999999999999999999853221 01111110 01122222211 24567888
Q ss_pred hccccCCCCCC-----CHHHHHHHHHHhhhhh
Q 042735 636 SCLDVSPESRP-----TMQTITQQLLFSLVYF 662 (667)
Q Consensus 636 ~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~ 662 (667)
+||+.+|++|| ++.|++++.||....+
T Consensus 228 ~~L~~dP~~R~~~~~~~~~~il~h~~~~~~~~ 259 (328)
T cd05593 228 GLLIKDPNKRLGGGPDDAKEIMRHSFFTGVNW 259 (328)
T ss_pred HHcCCCHHHcCCCCCCCHHHHhcCCCcCCCCH
Confidence 99999999997 8999999988865433
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate |
| >cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-32 Score=281.72 Aligned_cols=233 Identities=21% Similarity=0.317 Sum_probs=170.1
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|... ++..+|+|.+..... ....+.+.+|++++++++|||||++++++.+.+..++|
T Consensus 5 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 81 (333)
T cd06650 5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIK---PAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC 81 (333)
T ss_pred hhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccC---HHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEE
Confidence 57889999999999999999865 577888887754321 23345789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||+++|+|.+++.... ...|.||||+|||++.++.+||+|||+++..... ..
T Consensus 82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~--~~ 159 (333)
T cd06650 82 MEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS--MA 159 (333)
T ss_pred EecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcchhhhhh--cc
Confidence 99999999988764321 1224499999999999999999999999765332 22
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC----------Chhhh--hh----------
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP----------SPSVI--NM---------- 606 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~----------~~~~~--~~---------- 606 (667)
....||..|+||| ++.++|||||||++|||++|+.||........ ..... ..
T Consensus 160 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (333)
T cd06650 160 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGRPLS 239 (333)
T ss_pred ccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcchhHHHHHhcCcccCCccccccCcccCCccchhh
Confidence 3457999999999 46789999999999999999999753211000 00000 00
Q ss_pred --------------hhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 607 --------------RLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 607 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..........+..... ....++.+++.+||+.||++|||+.|++++.|+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~L~~~P~~Rpt~~ell~h~~~~~~ 305 (333)
T cd06650 240 SYGPDSRPPMAIFELLDYIVNEPPPKLPSG--VFGAEFQDFVNKCLIKNPAERADLKQLMVHAFIKRS 305 (333)
T ss_pred hhcccccccccHHHHHHHHhcCCCccCCCC--CcCHHHHHHHHHhccCCcccCcCHHHHhhCHHHhcC
Confidence 0000000000000000 011246788999999999999999999999998654
|
Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-32 Score=286.71 Aligned_cols=232 Identities=22% Similarity=0.313 Sum_probs=170.8
Q ss_pred CCcCcceeecccCeEEEEEEe----CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCce
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHS 496 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~----~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~ 496 (667)
+|+..+.||+|+||.||+|+. .++..+|+|++............+.+.+|+.++.+++ ||||+++++++...+..
T Consensus 1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~ 80 (332)
T cd05614 1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL 80 (332)
T ss_pred CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence 477888999999999999975 3578899998764322122233456889999999995 99999999999999999
Q ss_pred EEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCC-
Q 042735 497 ILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS- 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~- 551 (667)
++||||+++|+|.+.+.... ...|.||||+|||++.++.+||+|||+++......
T Consensus 81 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~ 160 (332)
T cd05614 81 HLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEK 160 (332)
T ss_pred EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCCccccccCC
Confidence 99999999999988774321 11244999999999999999999999998653322
Q ss_pred CCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchH
Q 042735 552 SNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (667)
......+||+.||||| ++.++|||||||++|||+||+.||....... .......... ..++..+...+
T Consensus 161 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~--- 235 (332)
T cd05614 161 ERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERN-TQSEVSRRIL-KCDPPFPSFIG--- 235 (332)
T ss_pred CccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCC-CHHHHHHHHh-cCCCCCCCCCC---
Confidence 2233467999999999 3568999999999999999999986322111 1111111111 11222222211
Q ss_pred HHHHHHHHHHHhccccCCCCCC-----CHHHHHHHHHHhhhh
Q 042735 625 GKLISIMEVAFSCLDVSPESRP-----TMQTITQQLLFSLVY 661 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~ 661 (667)
..+.+++.+||+.||++|| ++++++++.|+....
T Consensus 236 ---~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~~ 274 (332)
T cd05614 236 ---PEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKGLD 274 (332)
T ss_pred ---HHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcCCCcCCCC
Confidence 2456788899999999999 888999998876543
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-32 Score=281.19 Aligned_cols=237 Identities=21% Similarity=0.298 Sum_probs=168.3
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|+.. +++.+|||++...... .....+.+|+.++++++|||||++++++.+.+..++
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 80 (303)
T cd07869 4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEE---GTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTL 80 (303)
T ss_pred cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEecccccc---ccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEE
Confidence 367888999999999999999875 6788999988643221 122357789999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 499 IYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
||||++ |+|.+.+.... ...|.||||+|||++.++.+||+|||+++........
T Consensus 81 v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~ 159 (303)
T cd07869 81 VFEYVH-TDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHT 159 (303)
T ss_pred EEECCC-cCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCcceeccCCCcc
Confidence 999996 56665553321 1123499999999999999999999999865433333
Q ss_pred cccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhh-----------c--cccC
Q 042735 554 WSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRL-----------D--EMLD 613 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~-----------~--~~~~ 613 (667)
.....||+.|+||| |+.++||||+||++|||+||+.||................. . ....
T Consensus 160 ~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (303)
T cd07869 160 YSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFK 239 (303)
T ss_pred CCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhccccc
Confidence 34567899999999 35578999999999999999999864321100000000000 0 0000
Q ss_pred C-CCCCCCCc-hHH------HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 614 P-RLPPPSPD-VQG------KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 614 ~-~~~~~~~~-~~~------~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
+ ......+. ... ....+.+++.+|++.||++|||+.|++++.||..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~h~~f~~~ 294 (303)
T cd07869 240 PERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALSHEYFSDL 294 (303)
T ss_pred cccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhcCcccccC
Confidence 0 00000000 000 01245678889999999999999999999998654
|
Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an |
| >KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-32 Score=269.69 Aligned_cols=221 Identities=21% Similarity=0.333 Sum_probs=172.4
Q ss_pred CCcCcceeecccCeEEEEEE-eCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.+|+|.||.|-+|. ...|+.||||.+++..-. ...+...+.+||+||+.++||||+++|.+|+..+.+.|||
T Consensus 54 RyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIk-deqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivM 132 (668)
T KOG0611|consen 54 RYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIK-DEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVM 132 (668)
T ss_pred HHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcc-cHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEE
Confidence 45666789999999999996 578999999988764332 2344567889999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccCC------------------------cccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 501 EYLKRGSLATNLSNDAAA------------------------EELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~~------------------------~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
||..+|+|++++.+.+.. .|.|||.+|||+|.++++||+|||++-.+... ...++
T Consensus 133 EYaS~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~NiKIADFGLSNly~~~-kfLqT 211 (668)
T KOG0611|consen 133 EYASGGELYDYISERGSLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLSNLYADK-KFLQT 211 (668)
T ss_pred EecCCccHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecCCCCeeeeccchhhhhccc-cHHHH
Confidence 999999999998764321 13499999999999999999999999877643 45678
Q ss_pred ccccccccCCC------C-CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCC-CCCchHHHHH
Q 042735 557 LVGTYRYVAPD------Y-RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP-PSPDVQGKLI 628 (667)
Q Consensus 557 ~~Gt~~y~aPE------~-~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 628 (667)
+||+|-|.+|| | ...+|.||+||+||-|+.|..||+..+... .++.+-...... +.+..
T Consensus 212 FCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~--------lvrQIs~GaYrEP~~PSd----- 278 (668)
T KOG0611|consen 212 FCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHKR--------LVRQISRGAYREPETPSD----- 278 (668)
T ss_pred hcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchHHH--------HHHHhhcccccCCCCCch-----
Confidence 99999999999 3 468999999999999999999998543211 111221111111 11111
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
...++..++..+|++|.|..+|..+-|.-
T Consensus 279 -A~gLIRwmLmVNP~RRATieDiAsHWWvN 307 (668)
T KOG0611|consen 279 -ASGLIRWMLMVNPERRATIEDIASHWWVN 307 (668)
T ss_pred -HHHHHHHHHhcCcccchhHHHHhhhheee
Confidence 12344567889999999999999987753
|
|
| >cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-32 Score=283.72 Aligned_cols=223 Identities=20% Similarity=0.296 Sum_probs=167.4
Q ss_pred ceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCC
Q 042735 427 YCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKR 505 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~ 505 (667)
+.||+|+||.||+|+. .++..||+|++...... .......+.+|++++++++||||+++++++...+..++||||+++
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~ 79 (323)
T cd05595 1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVII-AKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANG 79 (323)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhh-hhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCC
Confidence 3689999999999976 46789999988643211 112345678899999999999999999999999999999999999
Q ss_pred CChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcccccccc
Q 042735 506 GSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561 (667)
Q Consensus 506 g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~ 561 (667)
|+|...+..... ..|.||||+|||++.++.+||+|||+++.............||+
T Consensus 80 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~ 159 (323)
T cd05595 80 GELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTP 159 (323)
T ss_pred CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhccccCCCCccccccCCc
Confidence 999877653321 12349999999999999999999999986433333334567999
Q ss_pred cccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHH
Q 042735 562 RYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF 635 (667)
Q Consensus 562 ~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (667)
.|+||| |+.++|||||||++|||+||+.||...... ........ ....++...+ ..+.+++.
T Consensus 160 ~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~----~~~~~~~~--~~~~~p~~~~------~~~~~li~ 227 (323)
T cd05595 160 EYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE----RLFELILM--EEIRFPRTLS------PEAKSLLA 227 (323)
T ss_pred CcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHH----HHHHHHhc--CCCCCCCCCC------HHHHHHHH
Confidence 999999 467899999999999999999998532211 01111100 1112222211 24567888
Q ss_pred hccccCCCCCC-----CHHHHHHHHHHhhhhh
Q 042735 636 SCLDVSPESRP-----TMQTITQQLLFSLVYF 662 (667)
Q Consensus 636 ~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~ 662 (667)
+||+.+|++|| ++.+++++.||....+
T Consensus 228 ~~L~~dP~~R~~~~~~~~~~~l~h~~~~~~~~ 259 (323)
T cd05595 228 GLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 259 (323)
T ss_pred HHccCCHHHhCCCCCCCHHHHHcCCCcCCCCH
Confidence 99999999998 8999999988876543
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in |
| >KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.9e-33 Score=275.84 Aligned_cols=232 Identities=22% Similarity=0.290 Sum_probs=171.5
Q ss_pred HHHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCC----------CchHHhHHHHHHHHHHHHhcCCCCeeEE
Q 042735 418 RAINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLP----------SDQIADQKEFFAEIEALTKIRHRNIVKF 486 (667)
Q Consensus 418 ~~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~----------~~~~~~~~~~~~E~~~l~~l~H~niv~~ 486 (667)
..++.|+....||+|.||.|-+|+. .+++.||||++.+... .+.....+...+||.+|++++|||||++
T Consensus 94 k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~L 173 (576)
T KOG0585|consen 94 KQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKL 173 (576)
T ss_pred eehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEE
Confidence 3568899999999999999999975 5688999998865321 1111123578899999999999999999
Q ss_pred EEEEEeC--CceEEEEEecCCCChHH-------------------------HhccccCCcccccccCCeeecCCCceEEe
Q 042735 487 YGFCSHA--RHSILIYEYLKRGSLAT-------------------------NLSNDAAAEELDISSKNVLLDLEHKAHVS 539 (667)
Q Consensus 487 ~g~~~~~--~~~~lv~ey~~~g~L~~-------------------------~l~~~~~~~~~dlk~~NiLld~~~~~kl~ 539 (667)
+.+..++ +..|||+|||..|.+.. +|+. +...|.||||+|+||+++|+|||+
T Consensus 174 iEvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~-QgiiHRDIKPsNLLl~~~g~VKIs 252 (576)
T KOG0585|consen 174 IEVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHY-QGIIHRDIKPSNLLLSSDGTVKIS 252 (576)
T ss_pred EEeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHh-cCeeccccchhheEEcCCCcEEee
Confidence 9999775 57999999999997632 1111 233466999999999999999999
Q ss_pred cccccccccCCC-----CCcccccccccccCCCC----------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhh
Q 042735 540 DFGIAKFLKPDS-----SNWSALVGTYRYVAPDY----------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVI 604 (667)
Q Consensus 540 DFGla~~~~~~~-----~~~~~~~Gt~~y~aPE~----------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~ 604 (667)
|||++-...... ......+|||.+||||. ..+.||||+||+||-|+.|+.||.......
T Consensus 253 DFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~~~------ 326 (576)
T KOG0585|consen 253 DFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFELE------ 326 (576)
T ss_pred ccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchHHH------
Confidence 999998763321 12334689999999992 346899999999999999999985322111
Q ss_pred hhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 605 NMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
....++...+..+ +..+.-..+.+++.+.|++||++|.+..+|..|+|....
T Consensus 327 --l~~KIvn~pL~fP--~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt~~ 378 (576)
T KOG0585|consen 327 --LFDKIVNDPLEFP--ENPEINEDLKDLIKRLLEKDPEQRITLPDIKLHPWVTRD 378 (576)
T ss_pred --HHHHHhcCcccCC--CcccccHHHHHHHHHHhhcChhheeehhhheecceeccC
Confidence 1112222222111 111222346678889999999999999999999987544
|
|
| >cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-32 Score=291.15 Aligned_cols=236 Identities=22% Similarity=0.297 Sum_probs=174.3
Q ss_pred HHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
..++|+..+.||+|+||.||+|+.. ++..+|+|++...... .....+.+.+|+.+++.++||||+++++++.+++..+
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~ 119 (370)
T cd05596 41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMI-KRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLY 119 (370)
T ss_pred CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhh-hhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence 3468889999999999999999864 5788999987532111 1122345789999999999999999999999999999
Q ss_pred EEEEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCC-C
Q 042735 498 LIYEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-N 553 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~ 553 (667)
+||||+++|+|.+.+..... ..|.||||+|||++.++.+||+|||+++....... .
T Consensus 120 lv~Ey~~gg~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~~ 199 (370)
T cd05596 120 MVMEYMPGGDLVNLMSNYDIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVR 199 (370)
T ss_pred EEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCccc
Confidence 99999999999887754221 12449999999999999999999999987543321 2
Q ss_pred cccccccccccCCC----------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 554 WSALVGTYRYVAPD----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE----------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
....+||+.||||| |+.++|||||||++|||+||+.||...... ...............+...
T Consensus 200 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~----~~~~~i~~~~~~~~~~~~~--- 272 (370)
T cd05596 200 CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV----GTYSKIMDHKNSLTFPDDI--- 272 (370)
T ss_pred CCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHH----HHHHHHHcCCCcCCCCCcC---
Confidence 23567999999999 356899999999999999999998633211 1111111000011112111
Q ss_pred HHHHHHHHHHHHhccccCCCC--CCCHHHHHHHHHHhhhhhc
Q 042735 624 QGKLISIMEVAFSCLDVSPES--RPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~--RPt~~ev~~~l~~~~~~~~ 663 (667)
.....+.+++.+|++.+|++ |||++|++++.|+....+.
T Consensus 273 -~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h~~~~~~~~~ 313 (370)
T cd05596 273 -EISKQAKDLICAFLTDREVRLGRNGVDEIKSHPFFKNDQWT 313 (370)
T ss_pred -CCCHHHHHHHHHHccChhhccCCCCHHHHhcCcccCCCChh
Confidence 11234567888999999987 9999999999998765443
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in |
| >cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.1e-32 Score=286.64 Aligned_cols=225 Identities=25% Similarity=0.404 Sum_probs=165.6
Q ss_pred cCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHA 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~ 493 (667)
++|+..+.||+|+||.||+|... ++..||||++..... ....+.+.+|+++++++ +|||||+++|+|.+.
T Consensus 38 ~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~ 114 (374)
T cd05106 38 DNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAH---TDEREALMSELKILSHLGQHKNIVNLLGACTHG 114 (374)
T ss_pred HHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCC---HHHHHHHHHHHHHHHhhccCCceeeEeeEecCC
Confidence 47888899999999999998642 235799999865432 22345788999999999 899999999999999
Q ss_pred CceEEEEEecCCCChHHHhcccc---------------------------------------------------------
Q 042735 494 RHSILIYEYLKRGSLATNLSNDA--------------------------------------------------------- 516 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~--------------------------------------------------------- 516 (667)
+..++||||+++|+|.+++....
T Consensus 115 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (374)
T cd05106 115 GPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQS 194 (374)
T ss_pred CCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccccccc
Confidence 99999999999999988774311
Q ss_pred -------------------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC--cccc
Q 042735 517 -------------------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSAL 557 (667)
Q Consensus 517 -------------------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~--~~~~ 557 (667)
...|.||||+|||+++++.+||+|||+++........ ....
T Consensus 195 ~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~ 274 (374)
T cd05106 195 SDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNA 274 (374)
T ss_pred ccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCC
Confidence 0113399999999999999999999999865433211 1123
Q ss_pred cccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 558 VGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 558 ~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
.+++.||||| |+.++|||||||++|||++ |+.||...... ..... .......+..+... ..++
T Consensus 275 ~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~---~~~~~-~~~~~~~~~~~~~~------~~~l 344 (374)
T cd05106 275 RLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVN---SKFYK-MVKRGYQMSRPDFA------PPEI 344 (374)
T ss_pred CCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCcccccc---HHHHH-HHHcccCccCCCCC------CHHH
Confidence 3567899999 5779999999999999997 99997532211 00000 01111111111111 1356
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.+++.+||+.+|++|||+.+|++.+...
T Consensus 345 ~~li~~cl~~dp~~RPs~~~l~~~l~~~ 372 (374)
T cd05106 345 YSIMKMCWNLEPTERPTFSQISQLIQRQ 372 (374)
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 7788899999999999999999988753
|
Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti |
| >cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=268.41 Aligned_cols=219 Identities=26% Similarity=0.457 Sum_probs=164.8
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|+..+.||+|+||.||+|++.++..+|+|.+.... ...+.|.+|++++++++||||+++++++.+.+..++||
T Consensus 4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~ 78 (256)
T cd05114 4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGA-----MSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVT 78 (256)
T ss_pred HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCC-----ccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEE
Confidence 4678888999999999999999888889999875321 12356889999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCC-Cc
Q 042735 501 EYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-NW 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~~ 554 (667)
||+++|+|.+.+..... ..|.||||+||+++.++.+||+|||+++....... ..
T Consensus 79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~ 158 (256)
T cd05114 79 EFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSS 158 (256)
T ss_pred EcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCccccCCCceecc
Confidence 99999999988753211 11349999999999999999999999986543221 11
Q ss_pred ccccccccccCCCC------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 555 SALVGTYRYVAPDY------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
....++..|+|||+ +.++|||||||++|||+| |+.||..... ....... ... .....+. . ..
T Consensus 159 ~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~----~~~~~~i-~~~--~~~~~~~-~---~~ 227 (256)
T cd05114 159 SGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSN----YEVVEMI-SRG--FRLYRPK-L---AS 227 (256)
T ss_pred CCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCH----HHHHHHH-HCC--CCCCCCC-C---CC
Confidence 22345678999993 568999999999999999 8989753221 1111111 110 0111111 1 12
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHH
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l 655 (667)
..+.+++.+||+.+|++||+|+|+++.|
T Consensus 228 ~~~~~li~~c~~~~p~~Rps~~~l~~~l 255 (256)
T cd05114 228 MTVYEVMYSCWHEKPEGRPTFAELLRAI 255 (256)
T ss_pred HHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence 3567889999999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h |
| >cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-32 Score=276.65 Aligned_cols=234 Identities=18% Similarity=0.265 Sum_probs=166.4
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|...+.||+|+||.||+|+.. ++..||+|++...... .....+.+|++++++++||||+++++++.+.+..++
T Consensus 4 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 80 (288)
T cd07871 4 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEE---GAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTL 80 (288)
T ss_pred cccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccC---CcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEE
Confidence 357888899999999999999764 5788999988643221 123457899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 499 IYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
||||+++ +|.+.+.... ...|.||||+|||++.++.+||+|||+++........
T Consensus 81 v~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~~ 159 (288)
T cd07871 81 VFEYLDS-DLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKT 159 (288)
T ss_pred EEeCCCc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCcceeeccCCCcc
Confidence 9999985 8877664321 1123499999999999999999999999865433333
Q ss_pred cccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC---------CC-hhhh-h-----hhhcc
Q 042735 554 WSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL---------PS-PSVI-N-----MRLDE 610 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~---------~~-~~~~-~-----~~~~~ 610 (667)
.....||+.|+||| |+.++||||+||++|||+||+.||....... .. .... . .....
T Consensus 160 ~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (288)
T cd07871 160 YSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRS 239 (288)
T ss_pred ccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchhhhc
Confidence 34467899999999 3567999999999999999999985321100 00 0000 0 00000
Q ss_pred ccCCCCCCCC--CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 611 MLDPRLPPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 611 ~~~~~~~~~~--~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
...+...... ........+..+++.+|++.||.+|||++|++++.||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~hp~f 288 (288)
T cd07871 240 YLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALRHSYF 288 (288)
T ss_pred cccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcCCCC
Confidence 0001000000 0000111245688889999999999999999998765
|
Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament |
| >KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-32 Score=277.63 Aligned_cols=221 Identities=25% Similarity=0.446 Sum_probs=166.5
Q ss_pred CcCcceeecccCeEEEEEEeCC---Cc--eEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 423 FDAKYCIGSGRHGSVYRAELPS---KE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~~---~~--~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
....++||.|.||.||+|.+.+ |+ -||||..+..... ...+.|.+|+-+|++++|||||+++|+|.+. ..|
T Consensus 391 Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~---d~tekflqEa~iMrnfdHphIikLIGv~~e~-P~W 466 (974)
T KOG4257|consen 391 ITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTP---DDTEKFLQEASIMRNFDHPHIIKLIGVCVEQ-PMW 466 (974)
T ss_pred ccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCCh---hhHHHHHHHHHHHHhCCCcchhheeeeeecc-cee
Confidence 3455779999999999998643 33 4888887664443 3356799999999999999999999999764 689
Q ss_pred EEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 498 LIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
||||.++-|.|..+|..... ..|.||.++|||+.....+|++|||++|.+..+.
T Consensus 467 ivmEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~- 545 (974)
T KOG4257|consen 467 IVMELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLESKRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDA- 545 (974)
T ss_pred EEEecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhheeecCcceeeecccchhhhccccc-
Confidence 99999999999999875431 1244999999999999999999999999887543
Q ss_pred Ccccccc--cccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 553 NWSALVG--TYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 553 ~~~~~~G--t~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
.+++..| ...||||| ++.+||||-|||.+||++. |..||..+..- .++ ..++..-....|+.+
T Consensus 546 yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNs----DVI-~~iEnGeRlP~P~nC--- 617 (974)
T KOG4257|consen 546 YYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNS----DVI-GHIENGERLPCPPNC--- 617 (974)
T ss_pred hhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCcccccccc----ceE-EEecCCCCCCCCCCC---
Confidence 3333344 36899999 6789999999999999876 99998643321 111 111111112222222
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
...+..++.+||+.+|.+||++.|+...|..+.
T Consensus 618 ---Pp~LYslmskcWayeP~kRPrftei~~~lsdv~ 650 (974)
T KOG4257|consen 618 ---PPALYSLMSKCWAYEPSKRPRFTEIKAILSDVL 650 (974)
T ss_pred ---ChHHHHHHHHHhccCcccCCcHHHHHHHHHHHH
Confidence 235667888999999999999999998876653
|
|
| >cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-32 Score=285.49 Aligned_cols=234 Identities=24% Similarity=0.305 Sum_probs=166.2
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||+||+|+. .+++.+|+|++...... .......+.+|++++.+++|||||++++++.+....++|
T Consensus 1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv 79 (363)
T cd05628 1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADML-EKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLI 79 (363)
T ss_pred CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHH-HhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEE
Confidence 4788899999999999999976 45788999988642111 122335678899999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCC---
Q 042735 500 YEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS--- 552 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~--- 552 (667)
|||+++|+|.+.+..... ..|.||||+|||++.++.+||+|||+++.......
T Consensus 80 ~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~ 159 (363)
T cd05628 80 MEFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEF 159 (363)
T ss_pred EcCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCcccccccccccc
Confidence 999999999988754321 12349999999999999999999999975432100
Q ss_pred --------------------------------CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCC
Q 042735 553 --------------------------------NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFV 594 (667)
Q Consensus 553 --------------------------------~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~ 594 (667)
.....+||+.|+||| |+.++|||||||++|||++|+.||...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~ 239 (363)
T cd05628 160 YRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSE 239 (363)
T ss_pred cccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCC
Confidence 012457999999999 577999999999999999999998532
Q ss_pred ccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHh--ccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 595 SSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFS--CLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
... ...............++..+. .. ...+++.+ |...++..||+++||+++.||..+.|.
T Consensus 240 ~~~----~~~~~i~~~~~~~~~p~~~~~-s~---~~~~li~~l~~~~~~r~~r~~~~ei~~hp~f~~~~~~ 302 (363)
T cd05628 240 TPQ----ETYKKVMNWKETLIFPPEVPI-SE---KAKDLILRFCCEWEHRIGAPGVEEIKTNPFFEGVDWE 302 (363)
T ss_pred CHH----HHHHHHHcCcCcccCCCcCCC-CH---HHHHHHHHHcCChhhcCCCCCHHHHhCCCCCCCCCHH
Confidence 210 111111100011112221111 11 12233333 444455578999999999999876554
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus |
| >cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-32 Score=282.81 Aligned_cols=229 Identities=23% Similarity=0.322 Sum_probs=167.3
Q ss_pred ceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 427 YCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
+.||+|+||.||+|+.. +++.+|+|.+...... .....+.+.+|+.++.++ +|||||++++++.+.+..++||||++
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~ 79 (329)
T cd05618 1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVN-DDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVN 79 (329)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhc-chhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCC
Confidence 36899999999999864 5778999988653221 123345678899988877 79999999999999999999999999
Q ss_pred CCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccccccc
Q 042735 505 RGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560 (667)
Q Consensus 505 ~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt 560 (667)
+|+|...+.... ...|.||||+||+++.++.+||+|||+++.............||
T Consensus 80 ~~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt 159 (329)
T cd05618 80 GGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGT 159 (329)
T ss_pred CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCccccccCC
Confidence 999987764321 11244999999999999999999999998643333334457899
Q ss_pred ccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCC-hhhhhhhhccccC--CCCCCCCCchHHHHHHHH
Q 042735 561 YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPS-PSVINMRLDEMLD--PRLPPPSPDVQGKLISIM 631 (667)
Q Consensus 561 ~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 631 (667)
+.|+||| |+.++|||||||++|||+||+.||......... ..........+.. ..+|... ...+.
T Consensus 160 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~------~~~~~ 233 (329)
T cd05618 160 PNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSL------SVKAA 233 (329)
T ss_pred ccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCCCCCCCCC------CHHHH
Confidence 9999999 467999999999999999999998532211100 0000000111111 1222211 12456
Q ss_pred HHHHhccccCCCCCCC------HHHHHHHHHHhhhhh
Q 042735 632 EVAFSCLDVSPESRPT------MQTITQQLLFSLVYF 662 (667)
Q Consensus 632 ~~~~~Cl~~~p~~RPt------~~ev~~~l~~~~~~~ 662 (667)
+++.+||+.||++||+ +++++++.||....|
T Consensus 234 ~ll~~~L~~dP~~R~~~~~~~~~~~i~~hp~f~~~~~ 270 (329)
T cd05618 234 SVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDW 270 (329)
T ss_pred HHHHHHhcCCHHHcCCCCCCCCHHHHhcCCCCCCCCH
Confidence 7888999999999998 689999988876544
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o |
| >cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-32 Score=282.99 Aligned_cols=225 Identities=23% Similarity=0.334 Sum_probs=165.4
Q ss_pred CcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHH---HhcCCCCeeEEEEEEEeCCceEE
Q 042735 423 FDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEAL---TKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l---~~l~H~niv~~~g~~~~~~~~~l 498 (667)
|+..+.||+|+||.||+|... +++.+|||++...... .....+.+.+|++++ ++++||||+++++++.+.+..++
T Consensus 1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~l 79 (324)
T cd05589 1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDII-ARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCF 79 (324)
T ss_pred CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhh-hhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEE
Confidence 456788999999999999864 5788999998642111 112234566676654 57789999999999999999999
Q ss_pred EEEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 499 IYEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
||||+++|+|...+..... ..|.||||+||+++.++.+||+|||+++..........
T Consensus 80 v~E~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~ 159 (324)
T cd05589 80 VMEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDRTS 159 (324)
T ss_pred EEcCCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCcccCCccCCCCCCccc
Confidence 9999999999877654321 12349999999999999999999999976443333344
Q ss_pred cccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 556 ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
..+||+.||||| |+.++|||||||++|||+||+.||..... ......... ..+..+...+ ..
T Consensus 160 ~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~----~~~~~~i~~--~~~~~p~~~~------~~ 227 (324)
T cd05589 160 TFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDE----EEVFDSIVN--DEVRYPRFLS------RE 227 (324)
T ss_pred ccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCH----HHHHHHHHh--CCCCCCCCCC------HH
Confidence 578999999999 46789999999999999999999853221 011111100 0111222111 24
Q ss_pred HHHHHHhccccCCCCCC-----CHHHHHHHHHHhhh
Q 042735 630 IMEVAFSCLDVSPESRP-----TMQTITQQLLFSLV 660 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~ 660 (667)
+.+++.+||+.||++|| ++.+++++.+|...
T Consensus 228 ~~~li~~~L~~dP~~R~~~~~~~~~~l~~~~~f~~~ 263 (324)
T cd05589 228 AISIMRRLLRRNPERRLGSGEKDAEDVKKQPFFRDI 263 (324)
T ss_pred HHHHHHHHhhcCHhHcCCCCCCCHHHHhhCCCcCCC
Confidence 56788899999999999 68999998887654
|
Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved |
| >cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=272.41 Aligned_cols=225 Identities=22% Similarity=0.287 Sum_probs=166.1
Q ss_pred eecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCCCC
Q 042735 429 IGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGS 507 (667)
Q Consensus 429 lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~g~ 507 (667)
||+|+||+||+|.. .+++.+|||++...... .....+.+..|++++++++||||+++++++......++||||+++|+
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~ 79 (280)
T cd05608 1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLK-KRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGD 79 (280)
T ss_pred CCCCCceeEEEEEEccCCcEEEEEeeeHHHHh-hhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCC
Confidence 69999999999976 46788999987643211 11223567889999999999999999999999999999999999999
Q ss_pred hHHHhccc-----c-----------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcccccc
Q 042735 508 LATNLSND-----A-----------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559 (667)
Q Consensus 508 L~~~l~~~-----~-----------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~G 559 (667)
|...+... . ...|.||||+||+++.++.+||+|||+++.............|
T Consensus 80 L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~g 159 (280)
T cd05608 80 LRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAG 159 (280)
T ss_pred HHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCccccccCC
Confidence 98765321 0 1123499999999999999999999999876544333445679
Q ss_pred cccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHH
Q 042735 560 TYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEV 633 (667)
Q Consensus 560 t~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (667)
|+.|+||| ++.++|||||||++|||+||+.||............. ..........+ + .....+.++
T Consensus 160 ~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~----~~~~~~~~~~~-~---~~~~~~~~l 231 (280)
T cd05608 160 TPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELK----QRILNDSVTYP-D---KFSPASKSF 231 (280)
T ss_pred CcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHH----HhhcccCCCCc-c---cCCHHHHHH
Confidence 99999999 4678999999999999999999986432111111111 11111111111 1 112246678
Q ss_pred HHhccccCCCCCC-----CHHHHHHHHHHhhhhh
Q 042735 634 AFSCLDVSPESRP-----TMQTITQQLLFSLVYF 662 (667)
Q Consensus 634 ~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~ 662 (667)
+.+||+.+|++|| |+++++++.||....+
T Consensus 232 i~~~l~~~P~~R~~~~~~~~~~~l~h~~~~~~~~ 265 (280)
T cd05608 232 CEALLAKDPEKRLGFRDGNCDGLRTHPLFRDLNW 265 (280)
T ss_pred HHHHhcCCHHHhcCCCCCCHHHHhcChhhhcCCH
Confidence 8899999999999 8899999999876544
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g |
| >KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-32 Score=250.31 Aligned_cols=235 Identities=20% Similarity=0.321 Sum_probs=173.0
Q ss_pred CCcCcceeecccCeEEEEEE-eCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
.|...+.+|+|.||.||+|+ ..+|+.||||+++.....+.. .....|||+.|+.++|||||.++++|...+..-+|+
T Consensus 3 rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi--~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVf 80 (318)
T KOG0659|consen 3 RYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGI--NRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVF 80 (318)
T ss_pred hhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCc--cHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEE
Confidence 46667889999999999997 477899999999765443332 346889999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 501 EYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
|||+. +|...+.... ..-|.|+||.|+|++++|.+||+|||+|+...+.....+
T Consensus 81 Efm~t-dLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~ 159 (318)
T KOG0659|consen 81 EFMPT-DLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQT 159 (318)
T ss_pred Eeccc-cHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCCcEEeecccchhccCCCCcccc
Confidence 99985 7766655432 122459999999999999999999999998876655555
Q ss_pred cccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhh---------h-hhhccccC---C-
Q 042735 556 ALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVI---------N-MRLDEMLD---P- 614 (667)
Q Consensus 556 ~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~---------~-~~~~~~~~---~- 614 (667)
..+-|..|-||| |...+|+||.|||+.||+-|.+-+...+++.....+. . .....+-| -
T Consensus 160 ~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~ 239 (318)
T KOG0659|consen 160 HQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQ 239 (318)
T ss_pred cceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccCccccccccHHHHh
Confidence 557899999999 7889999999999999999876443222110000000 0 00000000 0
Q ss_pred CCCCCCC--chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 615 RLPPPSP--DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 615 ~~~~~~~--~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..|.+.- -........++++...+..||.+|.|++|++++.+|..
T Consensus 240 ~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~~yf~~ 286 (318)
T KOG0659|consen 240 QFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALKHPYFKS 286 (318)
T ss_pred cCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhcchhhhc
Confidence 0111110 11122334578888999999999999999999999874
|
|
| >cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-32 Score=282.08 Aligned_cols=229 Identities=21% Similarity=0.319 Sum_probs=168.0
Q ss_pred ceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 427 YCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
+.||+|+||.||+|+.. ++..+|||.+...... .....+.+.+|+.++.++ +|||||++++++.+.+..++||||++
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~-~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~ 79 (329)
T cd05588 1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVN-DDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVS 79 (329)
T ss_pred CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhh-hhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCC
Confidence 36899999999999864 5788999988643221 122345688999999998 69999999999999999999999999
Q ss_pred CCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccccccc
Q 042735 505 RGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560 (667)
Q Consensus 505 ~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt 560 (667)
+|+|.+++.... ...|.||||+||+++.++.+||+|||+++............+||
T Consensus 80 ~g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt 159 (329)
T cd05588 80 GGDLMFHMQRQRKLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCGT 159 (329)
T ss_pred CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCccccccccCCCccccccCC
Confidence 999987764321 11234999999999999999999999998533323334457899
Q ss_pred ccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC-ChhhhhhhhccccC--CCCCCCCCchHHHHHHHH
Q 042735 561 YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP-SPSVINMRLDEMLD--PRLPPPSPDVQGKLISIM 631 (667)
Q Consensus 561 ~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 631 (667)
+.|+||| |+.++|||||||++|||+||+.||+....... ...........+.. ..+|... ...+.
T Consensus 160 ~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~ 233 (329)
T cd05588 160 PNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQIRIPRSL------SVKAS 233 (329)
T ss_pred ccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCCCCCCCCC------CHHHH
Confidence 9999999 56789999999999999999999863221110 00000001111111 1222211 12466
Q ss_pred HHHHhccccCCCCCCC------HHHHHHHHHHhhhhh
Q 042735 632 EVAFSCLDVSPESRPT------MQTITQQLLFSLVYF 662 (667)
Q Consensus 632 ~~~~~Cl~~~p~~RPt------~~ev~~~l~~~~~~~ 662 (667)
+++.+|++.||.+||+ +++++++.||....|
T Consensus 234 ~li~~~L~~dP~~R~~~~~~~~~~~i~~hp~~~~~~~ 270 (329)
T cd05588 234 SVLKGFLNKDPKERLGCHPQTGFRDIKSHPFFRNIDW 270 (329)
T ss_pred HHHHHHhccCHHHcCCCCCCCCHHHHhcCCCCCCCCH
Confidence 7888999999999987 789999999876544
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl |
| >cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-32 Score=277.79 Aligned_cols=235 Identities=22% Similarity=0.308 Sum_probs=167.6
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|+.. ++..+|||++...... ....+.+.+|++++++++||||+++++++...+..++|
T Consensus 1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 78 (287)
T cd07848 1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEEN--EEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLV 78 (287)
T ss_pred CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEeccccc--ccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEE
Confidence 36888899999999999999875 5778999988653221 12345688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC-Cc
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-NW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~~ 554 (667)
|||++++.+........ ...|.||||+||+++.++.+||+|||+++....... ..
T Consensus 79 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~ 158 (287)
T cd07848 79 FEYVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANY 158 (287)
T ss_pred EecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCcccccccccccc
Confidence 99999987754432111 112349999999999999999999999987643322 22
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC----------Chhhhhhh--hc-cccCCC
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP----------SPSVINMR--LD-EMLDPR 615 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~----------~~~~~~~~--~~-~~~~~~ 615 (667)
....||+.|+||| |+.++|||||||++|||++|+.||........ .+...... .. ......
T Consensus 159 ~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (287)
T cd07848 159 TEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLR 238 (287)
T ss_pred cccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccc
Confidence 3457999999999 56789999999999999999999863221000 00000000 00 000000
Q ss_pred CCCCC--Cch-----HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 616 LPPPS--PDV-----QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 616 ~~~~~--~~~-----~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.+... ... ......+.+++.+||+.||++|||++|++++.||
T Consensus 239 ~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~hp~f 287 (287)
T cd07848 239 FPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLNHPAF 287 (287)
T ss_pred cCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence 00000 000 0012357889999999999999999999998765
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes |
| >cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=281.41 Aligned_cols=224 Identities=22% Similarity=0.392 Sum_probs=165.1
Q ss_pred cCCcCcceeecccCeEEEEEEeCC------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHA 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~ 493 (667)
++|...+.||+|+||.||+|.... +..||||++..... ....+.|.+|++++++++ |||||+++|+|.+.
T Consensus 37 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~---~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~ 113 (400)
T cd05105 37 DGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTAR---SSEKQALMSELKIMTHLGPHLNIVNLLGACTKS 113 (400)
T ss_pred cceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCC---hHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccC
Confidence 567788999999999999997522 23699999865322 233457999999999996 99999999999999
Q ss_pred CceEEEEEecCCCChHHHhcccc---------------------------------------------------------
Q 042735 494 RHSILIYEYLKRGSLATNLSNDA--------------------------------------------------------- 516 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~--------------------------------------------------------- 516 (667)
+..++|||||++|+|.+++....
T Consensus 114 ~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (400)
T cd05105 114 GPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLE 193 (400)
T ss_pred CceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhh
Confidence 99999999999999988764310
Q ss_pred ---------------------------------------------------------------CCcccccccCCeeecCC
Q 042735 517 ---------------------------------------------------------------AAEELDISSKNVLLDLE 533 (667)
Q Consensus 517 ---------------------------------------------------------------~~~~~dlk~~NiLld~~ 533 (667)
...|.||||+|||++.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~Nill~~~ 273 (400)
T cd05105 194 IKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQG 273 (400)
T ss_pred hhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHhEEEeCC
Confidence 00123999999999999
Q ss_pred CceEEecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhh
Q 042735 534 HKAHVSDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVI 604 (667)
Q Consensus 534 ~~~kl~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~ 604 (667)
+.+||+|||+++....... ......|++.|+||| ++.++|||||||++|||++ |+.||..... .....
T Consensus 274 ~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~---~~~~~ 350 (400)
T cd05105 274 KIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIV---DSTFY 350 (400)
T ss_pred CEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccch---hHHHH
Confidence 9999999999986543322 122345778899999 4678999999999999997 8888753211 00011
Q ss_pred hhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 605 NMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
. ..........+. .....+.+++.+||+.+|++|||+.+|.+.+..
T Consensus 351 ~-~~~~~~~~~~~~------~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~ 396 (400)
T cd05105 351 N-KIKSGYRMAKPD------HATQEVYDIMVKCWNSEPEKRPSFLHLSDIVES 396 (400)
T ss_pred H-HHhcCCCCCCCc------cCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHH
Confidence 1 111111111111 112356788899999999999999999998864
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF- |
| >cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=269.55 Aligned_cols=226 Identities=23% Similarity=0.343 Sum_probs=167.7
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|.. .++..+|+|++..... .....+.+|+.++++++||||+++++++...+..++
T Consensus 8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~----~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~i 83 (267)
T cd06646 8 QHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPG----DDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWI 83 (267)
T ss_pred hhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCcc----chHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEE
Confidence 35788899999999999999986 5678899998764321 223467899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||+++|+|.+.+..... ..|.|+||+||+++.++.+||+|||+++.........
T Consensus 84 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~ 163 (267)
T cd06646 84 CMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKR 163 (267)
T ss_pred EEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCccceeeccccccc
Confidence 9999999999887753211 1234999999999999999999999998764333223
Q ss_pred ccccccccccCCCC---------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 555 SALVGTYRYVAPDY---------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~---------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
....|++.|+|||+ +.++|||||||++|||+||+.|+....... ............+.... ...
T Consensus 164 ~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~ 236 (267)
T cd06646 164 KSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMR---ALFLMSKSNFQPPKLKD----KTK 236 (267)
T ss_pred CccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhh---hheeeecCCCCCCCCcc----ccc
Confidence 34578999999993 347999999999999999999974222110 00000000011111111 011
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
....+.+++.+||+.+|++|||+++|+++++
T Consensus 237 ~~~~~~~li~~~l~~~P~~Rp~~~~il~~l~ 267 (267)
T cd06646 237 WSSTFHNFVKISLTKNPKKRPTAERLLTHLF 267 (267)
T ss_pred cCHHHHHHHHHHhhCChhhCcCHHHHhcCCC
Confidence 1235678889999999999999999998764
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-32 Score=275.36 Aligned_cols=237 Identities=21% Similarity=0.337 Sum_probs=175.1
Q ss_pred HcCCcCcceeecccCeEEEEEE-eCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCC-ce
Q 042735 420 INDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHAR-HS 496 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~-~~ 496 (667)
.++|...+.||.|.||.||+|+ ..+++.||||+++....+- ++..=.||+..|+++. |||||++.+++.+.+ .+
T Consensus 9 m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~---ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L 85 (538)
T KOG0661|consen 9 MDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSW---EECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRIL 85 (538)
T ss_pred HHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccH---HHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceE
Confidence 3567778899999999999997 5678899999998765431 2223468999999999 999999999999988 99
Q ss_pred EEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
|+|||||+- +|++.+.+.. ..-|+|+||+|||+.....+||+|||+||......
T Consensus 86 ~fVfE~Md~-NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~Skp 164 (538)
T KOG0661|consen 86 YFVFEFMDC-NLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGNDVIKIADFGLAREVRSKP 164 (538)
T ss_pred eeeHHhhhh-hHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEecccceeEecccccccccccCC
Confidence 999999985 6766654321 12245999999999989999999999999876443
Q ss_pred CCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC---------Chhhhh----hhhccc
Q 042735 552 SNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP---------SPSVIN----MRLDEM 611 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~---------~~~~~~----~~~~~~ 611 (667)
.+|..+.|..|-||| |+.+.|+||+|||++|+.+-++-|...+++.. .+.... ..+...
T Consensus 165 -PYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~ 243 (538)
T KOG0661|consen 165 -PYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASA 243 (538)
T ss_pred -CcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHH
Confidence 456788999999999 78999999999999999998876543322110 000000 011111
Q ss_pred cCCCCCCCCCch-----HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 612 LDPRLPPPSPDV-----QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 612 ~~~~~~~~~~~~-----~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
+.-++|...+.. .....+.++++.+|++.||++|||++|.+++.+|....
T Consensus 244 mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~pffq~~~ 298 (538)
T KOG0661|consen 244 MNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQHPFFQVGR 298 (538)
T ss_pred hccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcCccccccc
Confidence 222222221111 11234567788899999999999999999999987554
|
|
| >cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-32 Score=282.16 Aligned_cols=237 Identities=24% Similarity=0.368 Sum_probs=165.7
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC-----c
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR-----H 495 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~-----~ 495 (667)
+|+..+.||+|+||.||+|.. .++..||||++..... .......+.+|++++++++|||||++++++.... .
T Consensus 1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 78 (338)
T cd07859 1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFE--HVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKD 78 (338)
T ss_pred CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhc--cchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCce
Confidence 367788999999999999975 4688999998864322 1223456889999999999999999999886432 4
Q ss_pred eEEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
.++||||+. ++|.+.+.... ...|.||||+|||++.++.+||+|||+++......
T Consensus 79 ~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~ 157 (338)
T cd07859 79 IYVVFELME-SDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDT 157 (338)
T ss_pred EEEEEecCC-CCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCcccccccccc
Confidence 799999996 68877664321 11244999999999999999999999998643221
Q ss_pred ---CCcccccccccccCCC--------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC-----------CChhhhh----
Q 042735 552 ---SNWSALVGTYRYVAPD--------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL-----------PSPSVIN---- 605 (667)
Q Consensus 552 ---~~~~~~~Gt~~y~aPE--------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~-----------~~~~~~~---- 605 (667)
.......||+.|+||| |+.++|||||||++|||+||+.||....... +......
T Consensus 158 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 237 (338)
T cd07859 158 PTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRN 237 (338)
T ss_pred CccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhh
Confidence 1223467999999999 3568999999999999999999985322100 0000000
Q ss_pred hhhc---cccCCCCCCCCC-chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 606 MRLD---EMLDPRLPPPSP-DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 606 ~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.... ..+....+.+.. ........+.+++.+||+.+|++|||++|++++.||....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~hp~f~~~~ 297 (338)
T cd07859 238 EKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLA 297 (338)
T ss_pred hhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhcCchhhhcC
Confidence 0000 000001110000 0001123456888999999999999999999999987544
|
Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos |
| >cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-31 Score=269.17 Aligned_cols=222 Identities=25% Similarity=0.441 Sum_probs=165.9
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-C-----ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-K-----EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-~-----~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
++|+..+.||+|+||.||+|.... + ..+|+|.+.... .......|.+|++++++++||||+++++++...+
T Consensus 5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~---~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~ 81 (283)
T cd05048 5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENA---EPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQ 81 (283)
T ss_pred HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCC---CHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCC
Confidence 467888999999999999997533 2 468999876432 2233457999999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhccccC----------------------------------------CcccccccCCeeecCCC
Q 042735 495 HSILIYEYLKRGSLATNLSNDAA----------------------------------------AEELDISSKNVLLDLEH 534 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~~----------------------------------------~~~~dlk~~NiLld~~~ 534 (667)
..+++|||+++|+|.+++..... ..|.||||+||+++.++
T Consensus 82 ~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~~~ 161 (283)
T cd05048 82 PTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGL 161 (283)
T ss_pred ceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEEcCCC
Confidence 99999999999999988753210 01239999999999999
Q ss_pred ceEEecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhh
Q 042735 535 KAHVSDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVIN 605 (667)
Q Consensus 535 ~~kl~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~ 605 (667)
.+||+|||+++....... ......+|+.|+||| ++.++|||||||++|||+| |..||..... .....
T Consensus 162 ~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~----~~~~~ 237 (283)
T cd05048 162 TVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSN----QEVIE 237 (283)
T ss_pred cEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCH----HHHHH
Confidence 999999999986533221 123345788999999 3678999999999999998 9999753221 11111
Q ss_pred hhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 606 MRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
. +.....+.... ....++.+++.+||+.+|++||+++||+++|.
T Consensus 238 ~----i~~~~~~~~~~---~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~ 281 (283)
T cd05048 238 M----IRSRQLLPCPE---DCPARVYALMIECWNEIPARRPRFKDIHTRLR 281 (283)
T ss_pred H----HHcCCcCCCcc---cCCHHHHHHHHHHccCChhhCcCHHHHHHHHh
Confidence 1 11111111111 12235778888999999999999999999885
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer |
| >PTZ00267 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=290.01 Aligned_cols=222 Identities=22% Similarity=0.262 Sum_probs=165.3
Q ss_pred CCcCcceeecccCeEEEEEEeC-C-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-S-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
.|...+.||+|+||.||+|... + +..+|+|++... .......+.+|++++++++|||||++++++...+..++|
T Consensus 68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~----~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv 143 (478)
T PTZ00267 68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLN----DERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLI 143 (478)
T ss_pred eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccC----CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEE
Confidence 3778889999999999999753 3 567888875432 223345678899999999999999999999999999999
Q ss_pred EEecCCCChHHHhccc----c------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 500 YEYLKRGSLATNLSND----A------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~----~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
|||+++|+|.+.+... . ...|.||||+|||++.++.+||+|||+++......
T Consensus 144 ~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~ 223 (478)
T PTZ00267 144 MEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSV 223 (478)
T ss_pred EECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCcc
Confidence 9999999998765321 0 11234999999999999999999999998764332
Q ss_pred C--CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 552 S--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 552 ~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
. .....+||+.|+||| |+.++|||||||++|||+||+.||..... ...... ......++....
T Consensus 224 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~----~~~~~~----~~~~~~~~~~~~- 294 (478)
T PTZ00267 224 SLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQ----REIMQQ----VLYGKYDPFPCP- 294 (478)
T ss_pred ccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHH----HHhCCCCCCCcc-
Confidence 1 234567999999999 56789999999999999999999853221 111111 111111111111
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
....+.+++.+||+.+|++||++++++.+.+..
T Consensus 295 --~s~~~~~li~~~L~~dP~~Rps~~~~l~~~~~~ 327 (478)
T PTZ00267 295 --VSSGMKALLDPLLSKNPALRPTTQQLLHTEFLK 327 (478)
T ss_pred --CCHHHHHHHHHHhccChhhCcCHHHHHhCHHHH
Confidence 112466788899999999999999999876553
|
|
| >cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10 | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-31 Score=266.54 Aligned_cols=223 Identities=20% Similarity=0.337 Sum_probs=164.2
Q ss_pred cCCcCcceeecccCeEEEEEEeC----CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~----~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
.+|...+.||+|+||.||+|.+. .+..+|+|.+..... ....+.|.+|+.++++++|||||+++|++..++..
T Consensus 5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~ 81 (266)
T cd05064 5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCS---DKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTM 81 (266)
T ss_pred HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCC---HHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCc
Confidence 46778889999999999999753 345799998875422 22345799999999999999999999999999999
Q ss_pred EEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
++||||+++|+|.+++..... ..|.||||+||+++.++.+|++|||.+.......
T Consensus 82 ~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~ 161 (266)
T cd05064 82 MIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEA 161 (266)
T ss_pred EEEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCcccccccccc
Confidence 999999999999988754211 1134999999999999999999999886543221
Q ss_pred CC-cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 552 SN-WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 552 ~~-~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
.. .....++..|+||| ++.++|||||||++||+++ |+.||..... ...... .........+ ..
T Consensus 162 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~----~~~~~~-~~~~~~~~~~---~~- 232 (266)
T cd05064 162 IYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSG----QDVIKA-VEDGFRLPAP---RN- 232 (266)
T ss_pred hhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCH----HHHHHH-HHCCCCCCCC---CC-
Confidence 11 11234567899999 4678999999999999775 9999753321 111111 1111111111 11
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
....+.+++.+||+.+|++||+++||.+.+..
T Consensus 233 --~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~ 264 (266)
T cd05064 233 --CPNLLHQLMLDCWQKERGERPRFSQIHSILSK 264 (266)
T ss_pred --CCHHHHHHHHHHcCCCchhCCCHHHHHHHHHh
Confidence 12346678889999999999999999987643
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor |
| >cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-32 Score=280.71 Aligned_cols=223 Identities=22% Similarity=0.318 Sum_probs=165.9
Q ss_pred ceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 427 YCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
+.||+|+||.||+|+.. +++.+|||++...... .....+.+.+|++++..+ +||||+++++++.+.+..++||||++
T Consensus 1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~ 79 (320)
T cd05590 1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVIL-QDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVN 79 (320)
T ss_pred CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHh-hccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCC
Confidence 36899999999999864 5788999987642211 112345678899988876 59999999999999999999999999
Q ss_pred CCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccccccc
Q 042735 505 RGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560 (667)
Q Consensus 505 ~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt 560 (667)
+|+|.+.+.... ...|.||||+|||++.++.+||+|||+++.............||
T Consensus 80 ~g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt 159 (320)
T cd05590 80 GGDLMFHIQKSRRFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGT 159 (320)
T ss_pred CchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCcccccccC
Confidence 999987765321 11234999999999999999999999998643333334456899
Q ss_pred ccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHH
Q 042735 561 YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634 (667)
Q Consensus 561 ~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (667)
+.|+||| |+.++|||||||++|||+||+.||..... .......... ....+... ...+.+++
T Consensus 160 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~----~~~~~~i~~~--~~~~~~~~------~~~~~~li 227 (320)
T cd05590 160 PDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENE----DDLFEAILND--EVVYPTWL------SQDAVDIL 227 (320)
T ss_pred ccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH----HHHHHHHhcC--CCCCCCCC------CHHHHHHH
Confidence 9999999 56789999999999999999999863321 1111111110 11111111 12456788
Q ss_pred HhccccCCCCCCCH------HHHHHHHHHhhhhh
Q 042735 635 FSCLDVSPESRPTM------QTITQQLLFSLVYF 662 (667)
Q Consensus 635 ~~Cl~~~p~~RPt~------~ev~~~l~~~~~~~ 662 (667)
.+|++.||++||++ ++++++.||....+
T Consensus 228 ~~~L~~dP~~R~~~~~~~~~~~~~~h~~f~~~~~ 261 (320)
T cd05590 228 KAFMTKNPTMRLGSLTLGGEEAILRHPFFKELDW 261 (320)
T ss_pred HHHcccCHHHCCCCCCCCCHHHHHcCCCcCCCCH
Confidence 89999999999998 89999998876544
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-32 Score=285.17 Aligned_cols=219 Identities=25% Similarity=0.418 Sum_probs=171.5
Q ss_pred ceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCC
Q 042735 427 YCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKR 505 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~ 505 (667)
-++|+|.||+||-|+..+ ..++|||.+..+.. +..+-...||.+.++++|+|||+++|.+.+++..-|.||-++|
T Consensus 581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekds----r~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPG 656 (1226)
T KOG4279|consen 581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDS----REVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPG 656 (1226)
T ss_pred EEeecCceeEEEeeccccceeEEEeeecccccc----hhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCC
Confidence 469999999999998655 46799998875432 2344578999999999999999999999999999999999999
Q ss_pred CChHHHhccccC---------------------------CcccccccCCeeec-CCCceEEecccccccccCCCCCcccc
Q 042735 506 GSLATNLSNDAA---------------------------AEELDISSKNVLLD-LEHKAHVSDFGIAKFLKPDSSNWSAL 557 (667)
Q Consensus 506 g~L~~~l~~~~~---------------------------~~~~dlk~~NiLld-~~~~~kl~DFGla~~~~~~~~~~~~~ 557 (667)
|+|...|..... ..|.|||.+|||+. -.|.+||+|||.++.+........++
T Consensus 657 GSLSsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TETF 736 (1226)
T KOG4279|consen 657 GSLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTETF 736 (1226)
T ss_pred CcHHHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEeeccceEEecccccchhhccCCcccccc
Confidence 999988864311 12349999999996 78999999999999888777777889
Q ss_pred cccccccCCC--------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 558 VGTYRYVAPD--------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 558 ~Gt~~y~aPE--------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
.||..||||| |..++|||||||++.||.||++||-.... +........ ...+.|.+|. +-..+
T Consensus 737 TGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~Elgs--pqAAMFkVG-myKvHP~iPe------elsae 807 (1226)
T KOG4279|consen 737 TGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGS--PQAAMFKVG-MYKVHPPIPE------ELSAE 807 (1226)
T ss_pred ccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCC--hhHhhhhhc-ceecCCCCcH------HHHHH
Confidence 9999999999 78899999999999999999999853221 111111111 1112233332 22335
Q ss_pred HHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 630 IMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
...++.+|+.++|.+||++.++++..+-.
T Consensus 808 ak~FilrcFepd~~~R~sA~~LL~DpFlq 836 (1226)
T KOG4279|consen 808 AKNFILRCFEPDPCDRPSAKDLLQDPFLQ 836 (1226)
T ss_pred HHHHHHHHcCCCcccCccHHHhccCcccc
Confidence 66788999999999999999999876653
|
|
| >PHA03212 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=281.65 Aligned_cols=236 Identities=19% Similarity=0.256 Sum_probs=169.6
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
.+|...+.||+|+||.||+|.. .+++.||+|+.. ...+.+|++++++++|||||++++++......++|
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~----------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv 161 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ----------RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLI 161 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh----------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEE
Confidence 5688999999999999999975 567889999642 23467899999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCC-CCCc
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD-SSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~-~~~~ 554 (667)
+||+. ++|...+.... ...|.||||+|||++.++.+||+|||+|+..... ....
T Consensus 162 ~e~~~-~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~ 240 (391)
T PHA03212 162 LPRYK-TDLYCYLAAKRNIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKY 240 (391)
T ss_pred EecCC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCccccccccccccc
Confidence 99996 67766653321 1234599999999999999999999999754322 1223
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCC---hhhh------------------hhh
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPS---PSVI------------------NMR 607 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~---~~~~------------------~~~ 607 (667)
...+||+.|+||| |+.++|||||||++|||+||+.|+......... .... ...
T Consensus 241 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~ 320 (391)
T PHA03212 241 YGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQAN 320 (391)
T ss_pred ccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHH
Confidence 3468999999999 567899999999999999999875321110000 0000 000
Q ss_pred hcccc------CCCCCCCCCc---hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhccCCC
Q 042735 608 LDEML------DPRLPPPSPD---VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667 (667)
Q Consensus 608 ~~~~~------~~~~~~~~~~---~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~~~~~ 667 (667)
..... ....+...+. ......++.+++.+||+.||++|||++|++++.||......|..|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~hp~f~~~~~~~~~~ 389 (391)
T PHA03212 321 LDEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLDFAAFQDIPDPYPNP 389 (391)
T ss_pred HHHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhcChhhccCCCCCCCC
Confidence 00000 0000111111 111233577889999999999999999999999998766666554
|
|
| >cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-32 Score=282.49 Aligned_cols=223 Identities=20% Similarity=0.300 Sum_probs=167.5
Q ss_pred ceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCC
Q 042735 427 YCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKR 505 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~ 505 (667)
+.||+|+||.||+|+. .++..+|+|.+...... .......+.+|++++.+++||||+++++++...+..++||||+++
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~-~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~ 79 (325)
T cd05594 1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIV-AKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANG 79 (325)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhh-hhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence 3689999999999975 56788999988643211 112345678899999999999999999999999999999999999
Q ss_pred CChHHHhccc-------------------------cCCcccccccCCeeecCCCceEEecccccccccCCCCCccccccc
Q 042735 506 GSLATNLSND-------------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560 (667)
Q Consensus 506 g~L~~~l~~~-------------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt 560 (667)
|+|...+... ....|.||||+|||++.++.+||+|||+++.............||
T Consensus 80 ~~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt 159 (325)
T cd05594 80 GELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGT 159 (325)
T ss_pred CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcccccccCC
Confidence 9998766432 122345999999999999999999999998644333334456799
Q ss_pred ccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHH
Q 042735 561 YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634 (667)
Q Consensus 561 ~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (667)
+.||||| |+.++|||||||++|||+||+.||..... ....... ......++... ...+.+++
T Consensus 160 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~----~~~~~~i--~~~~~~~p~~~------~~~~~~li 227 (325)
T cd05594 160 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH----EKLFELI--LMEEIRFPRTL------SPEAKSLL 227 (325)
T ss_pred cccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCH----HHHHHHH--hcCCCCCCCCC------CHHHHHHH
Confidence 9999999 57799999999999999999999853221 0111110 00111222211 12456788
Q ss_pred HhccccCCCCCC-----CHHHHHHHHHHhhhhh
Q 042735 635 FSCLDVSPESRP-----TMQTITQQLLFSLVYF 662 (667)
Q Consensus 635 ~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~ 662 (667)
.+||+.||++|+ ++.+++++.|+..+.+
T Consensus 228 ~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~~~ 260 (325)
T cd05594 228 SGLLKKDPKQRLGGGPDDAKEIMQHKFFAGIVW 260 (325)
T ss_pred HHHhhcCHHHhCCCCCCCHHHHhcCCCcCCCCH
Confidence 899999999996 9999999988875543
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien |
| >PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=270.30 Aligned_cols=217 Identities=35% Similarity=0.556 Sum_probs=153.8
Q ss_pred CcceeecccCeEEEEEEeC-----CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 425 AKYCIGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 425 ~~~~lg~g~~g~vy~~~~~-----~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
..+.||.|.||.||+|.+. .+..|+||.+.... .....+.|.+|++.+++++||||++++|++...+..++|
T Consensus 3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv 79 (259)
T PF07714_consen 3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSS---SEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLV 79 (259)
T ss_dssp EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTS---SHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEE
T ss_pred EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEecccc---ccccceeeeeccccccccccccccccccccccccccccc
Confidence 3567999999999999876 24579999985432 223467899999999999999999999999988889999
Q ss_pred EEecCCCChHHHhccc-c--CC-----------------------cccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 500 YEYLKRGSLATNLSND-A--AA-----------------------EELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~-~--~~-----------------------~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
|||+++|+|.++|... . .. .|.||+++||+++.++.+||+|||+++........
T Consensus 80 ~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~ 159 (259)
T PF07714_consen 80 MEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKY 159 (259)
T ss_dssp EE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999988764 1 10 12399999999999999999999999876322111
Q ss_pred --cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchH
Q 042735 554 --WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624 (667)
Q Consensus 554 --~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (667)
.....+...|+||| ++.++||||||+++||++| |+.|+..... ..... .+........+...
T Consensus 160 ~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~----~~~~~-~~~~~~~~~~~~~~---- 230 (259)
T PF07714_consen 160 KNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDN----EEIIE-KLKQGQRLPIPDNC---- 230 (259)
T ss_dssp EESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCH----HHHHH-HHHTTEETTSBTTS----
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccc-cccccccceeccch----
Confidence 12235678899999 4779999999999999999 6788643211 11111 11111111111111
Q ss_pred HHHHHHHHHHHhccccCCCCCCCHHHHHHHH
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQL 655 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l 655 (667)
...+.+++.+||+.+|++||||++|++.|
T Consensus 231 --~~~~~~li~~C~~~~p~~RPs~~~i~~~L 259 (259)
T PF07714_consen 231 --PKDIYSLIQQCWSHDPEKRPSFQEILQEL 259 (259)
T ss_dssp --BHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred --hHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence 22466788899999999999999999876
|
Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A .... |
| >cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-32 Score=280.05 Aligned_cols=223 Identities=22% Similarity=0.314 Sum_probs=166.3
Q ss_pred ceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 427 YCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
+.||+|+||.||+|+.. +++.+|||++...... .....+.+..|++++..+ +||||+++++++.+.+..++||||++
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~ 79 (321)
T cd05591 1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVIL-QDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVN 79 (321)
T ss_pred CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhh-hhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCC
Confidence 36899999999999865 4778999987643211 112345678899998866 69999999999999999999999999
Q ss_pred CCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccccccc
Q 042735 505 RGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560 (667)
Q Consensus 505 ~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt 560 (667)
+|+|...+.... ...|.||||+||+++.++.+||+|||+++............+||
T Consensus 80 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt 159 (321)
T cd05591 80 GGDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGT 159 (321)
T ss_pred CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeecccceecccCCccccccccC
Confidence 999987664321 11244999999999999999999999998644333334456899
Q ss_pred ccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHH
Q 042735 561 YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634 (667)
Q Consensus 561 ~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (667)
+.|+||| |+.++|||||||++|||+||+.||...... ......... +...+...+ ..+.+++
T Consensus 160 ~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~----~~~~~i~~~--~~~~p~~~~------~~~~~ll 227 (321)
T cd05591 160 PDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNED----DLFESILHD--DVLYPVWLS------KEAVSIL 227 (321)
T ss_pred ccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCHH----HHHHHHHcC--CCCCCCCCC------HHHHHHH
Confidence 9999999 577899999999999999999998643211 111111000 111111111 2456788
Q ss_pred HhccccCCCCCC-------CHHHHHHHHHHhhhhh
Q 042735 635 FSCLDVSPESRP-------TMQTITQQLLFSLVYF 662 (667)
Q Consensus 635 ~~Cl~~~p~~RP-------t~~ev~~~l~~~~~~~ 662 (667)
.+||+.+|++|| ++++++++.|+..+.|
T Consensus 228 ~~~L~~dp~~R~~~~~~~~~~~~~~~hp~~~~~~~ 262 (321)
T cd05591 228 KAFMTKNPNKRLGCVASQGGEDAIKQHPFFKEIDW 262 (321)
T ss_pred HHHhccCHHHcCCCCCCCCCHHHHhcCCccCCCCH
Confidence 899999999999 9999999998866544
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to |
| >cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-32 Score=287.48 Aligned_cols=232 Identities=25% Similarity=0.299 Sum_probs=169.1
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|+.. +++.||||++...... .......+.+|++++..++||||+++++++.+++..++|
T Consensus 1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv 79 (364)
T cd05599 1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEML-EKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLI 79 (364)
T ss_pred CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhh-hhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEE
Confidence 47888999999999999999864 5788999998642111 112335678999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCC---
Q 042735 500 YEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS--- 552 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~--- 552 (667)
|||+++|+|.+.+..... ..|.||||+|||++.++.+||+|||+++.+.....
T Consensus 80 ~E~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~ 159 (364)
T cd05599 80 MEYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEF 159 (364)
T ss_pred ECCCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeecccceeccccccccc
Confidence 999999999988754321 12349999999999999999999999975432110
Q ss_pred -----------------------------------CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCC
Q 042735 553 -----------------------------------NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPR 591 (667)
Q Consensus 553 -----------------------------------~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~ 591 (667)
.....+||+.|+||| |+.++|||||||++|||++|+.||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf 239 (364)
T cd05599 160 YRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPF 239 (364)
T ss_pred cccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCC
Confidence 011346999999999 577899999999999999999998
Q ss_pred CCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCC---HHHHHHHHHHhhhhh
Q 042735 592 GFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPT---MQTITQQLLFSLVYF 662 (667)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt---~~ev~~~l~~~~~~~ 662 (667)
...... ...............+... . ....+.+++.+|+. +|.+|++ ++|++++.|+....+
T Consensus 240 ~~~~~~----~~~~~i~~~~~~~~~~~~~-~---~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~h~~~~~~~~ 304 (364)
T cd05599 240 CSDNPQ----ETYRKIINWKETLQFPDEV-P---LSPEAKDLIKRLCC-EAERRLGNNGVNEIKSHPFFKGVDW 304 (364)
T ss_pred CCCCHH----HHHHHHHcCCCccCCCCCC-C---CCHHHHHHHHHHcc-CHhhcCCCCCHHHHhcCCCcCCCCH
Confidence 633211 0000000000011111111 0 11234567778886 8999998 999999999876544
|
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica |
| >cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-32 Score=287.07 Aligned_cols=232 Identities=21% Similarity=0.309 Sum_probs=164.9
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
.|+..+.||+|+||.||+|+. .+++.+|+|++..... ......+.+.+|++++++++|||||++++++.+.+..++||
T Consensus 2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~-~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~ 80 (382)
T cd05625 2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDV-LLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVM 80 (382)
T ss_pred CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHh-hhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEE
Confidence 578889999999999999976 4578899998764211 11223456889999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCC------
Q 042735 501 EYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD------ 550 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~------ 550 (667)
||+++|+|.+.+..... ..|.||||+|||++.++.+||+|||+++.....
T Consensus 81 E~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~ 160 (382)
T cd05625 81 DYIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYY 160 (382)
T ss_pred eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCcccccccccccc
Confidence 99999999887754321 123499999999999999999999997532100
Q ss_pred -----------------------------------------CCCcccccccccccCCC------CCCCchHHHHHHHHHH
Q 042735 551 -----------------------------------------SSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALE 583 (667)
Q Consensus 551 -----------------------------------------~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~E 583 (667)
.......+||+.|+||| |+.++|||||||++||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~e 240 (382)
T cd05625 161 QSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYE 240 (382)
T ss_pred ccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHH
Confidence 00012357999999999 5778999999999999
Q ss_pred HHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCC---HHHHHHHHHHhhh
Q 042735 584 VIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPT---MQTITQQLLFSLV 660 (667)
Q Consensus 584 lltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt---~~ev~~~l~~~~~ 660 (667)
|+||+.||...... ...............+... .... +..+++.+++ .+|++|++ ++|++++.||...
T Consensus 241 lltG~~Pf~~~~~~----~~~~~i~~~~~~~~~p~~~-~~s~---~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~ 311 (382)
T cd05625 241 MLVGQPPFLAQTPL----ETQMKVINWQTSLHIPPQA-KLSP---EASDLIIKLC-RGPEDRLGKNGADEIKAHPFFKTI 311 (382)
T ss_pred HHhCCCCCCCCCHH----HHHHHHHccCCCcCCCCcc-cCCH---HHHHHHHHHc-cCHhHcCCCCCHHHHhcCCCcCCc
Confidence 99999998632211 0000000000111111111 1111 2334444443 58999987 9999999998765
Q ss_pred hhc
Q 042735 661 YFS 663 (667)
Q Consensus 661 ~~~ 663 (667)
.+.
T Consensus 312 ~~~ 314 (382)
T cd05625 312 DFS 314 (382)
T ss_pred ChH
Confidence 543
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an |
| >cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-32 Score=283.24 Aligned_cols=222 Identities=24% Similarity=0.328 Sum_probs=162.2
Q ss_pred ceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHH-HHHhcCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 427 YCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIE-ALTKIRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~-~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
+.||+|+||+||+|... +++.+|+|++...... .....+.+.+|.. +++.++|||||++++++.+.+..++||||++
T Consensus 1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~ 79 (323)
T cd05575 1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAIL-KKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVN 79 (323)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHh-hhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCC
Confidence 36899999999999864 6888999987542111 1122344556655 5678999999999999999999999999999
Q ss_pred CCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccccccc
Q 042735 505 RGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560 (667)
Q Consensus 505 ~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt 560 (667)
+|+|...+..... ..|.||||+|||++.++.+||+|||+++............+||
T Consensus 80 ~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt 159 (323)
T cd05575 80 GGELFFHLQRERSFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGT 159 (323)
T ss_pred CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCccccccCC
Confidence 9999877654321 1234999999999999999999999998643333334456899
Q ss_pred ccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHH
Q 042735 561 YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634 (667)
Q Consensus 561 ~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (667)
+.|+||| |+.++|||||||++|||+||+.||..... .......... ....++.. ...+.+++
T Consensus 160 ~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~----~~~~~~i~~~--~~~~~~~~------~~~~~~li 227 (323)
T cd05575 160 PEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDT----AEMYDNILNK--PLRLKPNI------SVSARHLL 227 (323)
T ss_pred hhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCH----HHHHHHHHcC--CCCCCCCC------CHHHHHHH
Confidence 9999999 56789999999999999999999853221 0111111111 11112111 12456788
Q ss_pred HhccccCCCCCCCH----HHHHHHHHHhhhh
Q 042735 635 FSCLDVSPESRPTM----QTITQQLLFSLVY 661 (667)
Q Consensus 635 ~~Cl~~~p~~RPt~----~ev~~~l~~~~~~ 661 (667)
.+|++.+|++||++ .|++++.|+....
T Consensus 228 ~~~l~~~p~~R~~~~~~~~~il~~~~~~~~~ 258 (323)
T cd05575 228 EGLLQKDRTKRLGAKDDFLEIKNHVFFSSIN 258 (323)
T ss_pred HHHhhcCHHhCCCCCCCHHHHHcCCCcCCCC
Confidence 89999999999987 5888888776543
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr |
| >cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=277.77 Aligned_cols=228 Identities=22% Similarity=0.309 Sum_probs=168.5
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCC-CCeeEEEEEEEeCCceEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH-RNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H-~niv~~~g~~~~~~~~~lv 499 (667)
+|+..+.||+|+||.||+|+.. +++.+|||++...... .....+.+..|++++..++| ++|+++++++.+.+..|+|
T Consensus 1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv 79 (324)
T cd05587 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVII-QDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFV 79 (324)
T ss_pred CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhh-hhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEE
Confidence 5778889999999999999865 4678999988643211 12234568899999999986 4688999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
|||+++|+|.+.+.... ...|.||||+|||++.++.+||+|||+++..........
T Consensus 80 ~E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~ 159 (324)
T cd05587 80 MEYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTR 159 (324)
T ss_pred EcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCCcee
Confidence 99999999987764321 112449999999999999999999999975433333344
Q ss_pred cccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 556 ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
..+||+.|+||| |+.++|||||||++|||+||+.||...... ..... ... .....+... ...
T Consensus 160 ~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~----~~~~~-i~~-~~~~~~~~~------~~~ 227 (324)
T cd05587 160 TFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDED----ELFQS-IME-HNVSYPKSL------SKE 227 (324)
T ss_pred eecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH----HHHHH-HHc-CCCCCCCCC------CHH
Confidence 568999999999 467899999999999999999998633211 11111 101 111122211 124
Q ss_pred HHHHHHhccccCCCCCCCH-----HHHHHHHHHhhhhh
Q 042735 630 IMEVAFSCLDVSPESRPTM-----QTITQQLLFSLVYF 662 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RPt~-----~ev~~~l~~~~~~~ 662 (667)
+.+++.+||+.+|++||+. +++.++.++....+
T Consensus 228 ~~~li~~~l~~~P~~R~~~~~~~~~~~~~hp~~~~~~~ 265 (324)
T cd05587 228 AVSICKGLLTKHPAKRLGCGPTGERDIREHAFFRRIDW 265 (324)
T ss_pred HHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCCcCCCCH
Confidence 5678889999999999986 78988888765443
|
Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory |
| >cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=278.39 Aligned_cols=222 Identities=24% Similarity=0.361 Sum_probs=161.9
Q ss_pred ceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHh-cCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 427 YCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-IRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~-l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
+.||+|+||.||+|+.. +++.||||.+....... ....+.+..|..++.. .+||||+++++++...+..++||||++
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~ 79 (316)
T cd05592 1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLE-DDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLN 79 (316)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh-hhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCC
Confidence 36899999999999864 57789999876432111 1223456677777765 479999999999999999999999999
Q ss_pred CCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccccccc
Q 042735 505 RGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560 (667)
Q Consensus 505 ~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt 560 (667)
+|+|...+.... ...|.||||+||+++.++.+||+|||+++............+||
T Consensus 80 gg~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt 159 (316)
T cd05592 80 GGDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGT 159 (316)
T ss_pred CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCccccccCC
Confidence 999987764321 11234999999999999999999999998654333344557899
Q ss_pred ccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHH
Q 042735 561 YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634 (667)
Q Consensus 561 ~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (667)
+.|+||| |+.++|||||||++|||++|+.||..... ...... +.. ..+..+...+ ..+.+++
T Consensus 160 ~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~----~~~~~~-i~~-~~~~~~~~~~------~~~~~ll 227 (316)
T cd05592 160 PDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDE----DELFDS-ILN-DRPHFPRWIS------KEAKDCL 227 (316)
T ss_pred ccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCH----HHHHHH-HHc-CCCCCCCCCC------HHHHHHH
Confidence 9999999 57789999999999999999999863321 111111 101 1112221111 2355778
Q ss_pred HhccccCCCCCCCHH-HHHHHHHHhhhh
Q 042735 635 FSCLDVSPESRPTMQ-TITQQLLFSLVY 661 (667)
Q Consensus 635 ~~Cl~~~p~~RPt~~-ev~~~l~~~~~~ 661 (667)
.+||+.+|++||++. +++++.++....
T Consensus 228 ~~~l~~~P~~R~~~~~~l~~h~~~~~~~ 255 (316)
T cd05592 228 SKLFERDPTKRLGVDGDIRQHPFFRGID 255 (316)
T ss_pred HHHccCCHHHcCCChHHHHcCcccCCCC
Confidence 899999999999864 787877776543
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp |
| >KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=275.10 Aligned_cols=230 Identities=23% Similarity=0.322 Sum_probs=179.0
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~l 498 (667)
..|+..+.||+|.||.||+++.+. |+.+|+|.+.+...... .......+|+++|+++. |||||+++++|.+....++
T Consensus 35 ~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~-~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~l 113 (382)
T KOG0032|consen 35 EKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGK-EDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYL 113 (382)
T ss_pred ccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhcccc-ccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEE
Confidence 356777899999999999998755 88999999876544322 23457889999999999 9999999999999999999
Q ss_pred EEEecCCCChHHHhcccc-----------------------CCcccccccCCeeecCC----CceEEecccccccccCCC
Q 042735 499 IYEYLKRGSLATNLSNDA-----------------------AAEELDISSKNVLLDLE----HKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~-----------------------~~~~~dlk~~NiLld~~----~~~kl~DFGla~~~~~~~ 551 (667)
|||++.||+|.+.+.... ...|+|+||+|+|+... +.+|++|||++..... .
T Consensus 114 vmEL~~GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~-~ 192 (382)
T KOG0032|consen 114 VMELCEGGELFDRIVKKHYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKP-G 192 (382)
T ss_pred EEEecCCchHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccC-C
Confidence 999999999998776531 11244999999999643 4799999999998776 4
Q ss_pred CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
......+||+.|+||| |+.++||||.||++|.|+.|.+||.......... .+....+....+.+..
T Consensus 193 ~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~--------~i~~~~~~f~~~~w~~ 264 (382)
T KOG0032|consen 193 ERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFL--------AILRGDFDFTSEPWDD 264 (382)
T ss_pred ceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHH--------HHHcCCCCCCCCCccc
Confidence 4567789999999999 7889999999999999999999986433211111 1112222112222222
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
......+++..++..||.+|+|+.++++|.|....
T Consensus 265 is~~akd~i~~ll~~dp~~R~ta~~~L~HpWi~~~ 299 (382)
T KOG0032|consen 265 ISESAKDFIRKLLEFDPRKRLTAAQALQHPWIKSI 299 (382)
T ss_pred cCHHHHHHHHHhcccCcccCCCHHHHhcCccccCC
Confidence 33456678889999999999999999999986654
|
|
| >cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-31 Score=263.58 Aligned_cols=222 Identities=24% Similarity=0.386 Sum_probs=169.7
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|++|.||+|... ++..+++|.+..... .....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 78 (256)
T cd08529 1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKM--NRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVM 78 (256)
T ss_pred CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhC--CHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEE
Confidence 4677889999999999999864 578899998754322 2334567999999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 501 EYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||+++++|.+++.... ...|.|+||+||+++.++.+||+|||+++.........
T Consensus 79 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~~ 158 (256)
T cd08529 79 EYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFA 158 (256)
T ss_pred EeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEcccccceeccCccchh
Confidence 9999999998875421 01123999999999999999999999998766544434
Q ss_pred ccccccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
....|++.|+|||+ +.++|||||||++|||+||+.||..... ..... .......+.... ....
T Consensus 159 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~----~~~~~~~~~~~~---~~~~ 227 (256)
T cd08529 159 NTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQ----GALIL----KIIRGVFPPVSQ---MYSQ 227 (256)
T ss_pred hccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCH----HHHHH----HHHcCCCCCCcc---ccCH
Confidence 45678999999993 6789999999999999999999863321 11111 111111111111 1123
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
.+.+++.+||+.+|++||+|.+++++.+
T Consensus 228 ~~~~~i~~~l~~~p~~Rp~~~~ll~~~~ 255 (256)
T cd08529 228 QLAQLIDQCLTKDYRQRPDTFQLLRNPS 255 (256)
T ss_pred HHHHHHHHHccCCcccCcCHHHHhhCCC
Confidence 5678888999999999999999998743
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc |
| >cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-32 Score=287.25 Aligned_cols=232 Identities=24% Similarity=0.350 Sum_probs=173.6
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|+.. +++.+|||++...... .......+.+|++++..++||||+++++++.+.+..++|
T Consensus 1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv 79 (350)
T cd05573 1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMI-KRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLV 79 (350)
T ss_pred CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHh-hccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEE
Confidence 36888899999999999999865 6889999998643211 112345688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCC----
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS---- 551 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~---- 551 (667)
|||+++|+|.+.+.... ...|.||||+||+++.++.+||+|||+++......
T Consensus 80 ~e~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~ 159 (350)
T cd05573 80 MEYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREY 159 (350)
T ss_pred EcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCccCcccCcccc
Confidence 99999999988875431 11234999999999999999999999998654332
Q ss_pred -------------------------CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCC
Q 042735 552 -------------------------SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPS 600 (667)
Q Consensus 552 -------------------------~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~ 600 (667)
.......||+.|+||| ++.++|||||||++|||+||+.||......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~--- 236 (350)
T cd05573 160 YLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQ--- 236 (350)
T ss_pred cccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCHH---
Confidence 1223457999999999 578999999999999999999998643211
Q ss_pred hhhhhhhhccc-cCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCC-HHHHHHHHHHhhhhhc
Q 042735 601 PSVINMRLDEM-LDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPT-MQTITQQLLFSLVYFS 663 (667)
Q Consensus 601 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt-~~ev~~~l~~~~~~~~ 663 (667)
.....+... .....+.... ....+.+++.+|+. +|++||+ ++|++++.|+....|+
T Consensus 237 --~~~~~i~~~~~~~~~p~~~~----~~~~~~~li~~ll~-dp~~R~~s~~~ll~hp~~~~~~~~ 294 (350)
T cd05573 237 --ETYNKIINWKESLRFPPDPP----VSPEAIDLICRLLC-DPEDRLGSFEEIKSHPFFKGIDWE 294 (350)
T ss_pred --HHHHHHhccCCcccCCCCCC----CCHHHHHHHHHHcc-ChhhcCCCHHHHhcCCCcCCCCHH
Confidence 100011110 0111111110 12245677789997 9999999 9999999998765543
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the |
| >cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=277.29 Aligned_cols=225 Identities=22% Similarity=0.323 Sum_probs=167.9
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~lv 499 (667)
+|+..+.||+|+||.||+|+.. ++..+|||.+...... .....+.+..|..++..+. ||+|+++++++.+.+..++|
T Consensus 1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv 79 (323)
T cd05616 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVI-QDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFV 79 (323)
T ss_pred CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhh-hhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEE
Confidence 5778899999999999999865 4678999988653221 1223345778888888774 89999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
|||+++|+|.+.+.... ...|.||||+|||++.++.+||+|||+++..........
T Consensus 80 ~E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~~~~ 159 (323)
T cd05616 80 MEYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTK 159 (323)
T ss_pred EcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCceecCCCCCccc
Confidence 99999999987764321 112349999999999999999999999986443333344
Q ss_pred cccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCC--CCCCCCCchHHHH
Q 042735 556 ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKL 627 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 627 (667)
..+||+.|+||| |+.++|||||||++|||+||+.||..... .... ..+... ..+... .
T Consensus 160 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~----~~~~----~~i~~~~~~~p~~~------s 225 (323)
T cd05616 160 TFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE----DELF----QSIMEHNVAYPKSM------S 225 (323)
T ss_pred cCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCH----HHHH----HHHHhCCCCCCCcC------C
Confidence 578999999999 57799999999999999999999863321 1111 111111 122111 1
Q ss_pred HHHHHHHHhccccCCCCCCC-----HHHHHHHHHHhhhh
Q 042735 628 ISIMEVAFSCLDVSPESRPT-----MQTITQQLLFSLVY 661 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt-----~~ev~~~l~~~~~~ 661 (667)
.++.+++.+|++.+|++|++ ..++.++.++....
T Consensus 226 ~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~~~~~~ 264 (323)
T cd05616 226 KEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYID 264 (323)
T ss_pred HHHHHHHHHHcccCHHhcCCCCCCCHHHHhcCCCcCCCC
Confidence 24567888999999999998 47888887775443
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and |
| >cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-32 Score=285.09 Aligned_cols=233 Identities=21% Similarity=0.305 Sum_probs=169.2
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|+.. +++.+|+|.+...... .....+.+.+|+.+++.++|||||++++++.+++..++
T Consensus 42 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~l 120 (370)
T cd05621 42 AEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMI-KRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYM 120 (370)
T ss_pred HHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhh-hhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEE
Confidence 467888999999999999999875 5778999987532111 11233468899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCC-Cc
Q 042735 499 IYEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-NW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~~ 554 (667)
||||+++|+|.+.+..... ..|.||||+|||++.++.+||+|||+|+....... ..
T Consensus 121 v~Ey~~gg~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~ 200 (370)
T cd05621 121 VMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRC 200 (370)
T ss_pred EEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEEecccceecccCCceec
Confidence 9999999999887754321 12449999999999999999999999987643322 22
Q ss_pred ccccccccccCCC----------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchH
Q 042735 555 SALVGTYRYVAPD----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624 (667)
Q Consensus 555 ~~~~Gt~~y~aPE----------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (667)
.+.+||+.||||| |+.++||||+||++|||+||+.||...... ...............+... .
T Consensus 201 ~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~----~~~~~i~~~~~~~~~p~~~-~-- 273 (370)
T cd05621 201 DTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLV----GTYSKIMDHKNSLNFPEDV-E-- 273 (370)
T ss_pred ccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCHH----HHHHHHHhCCcccCCCCcc-c--
Confidence 4567999999999 456899999999999999999998633211 0111111000011111111 1
Q ss_pred HHHHHHHHHHHhccccCCC--CCCCHHHHHHHHHHhhhh
Q 042735 625 GKLISIMEVAFSCLDVSPE--SRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~--~RPt~~ev~~~l~~~~~~ 661 (667)
....+.+++..|+..++. .|||++|++++.|+....
T Consensus 274 -~s~~~~~li~~~L~~~~~r~~R~~~~e~l~hp~~~~~~ 311 (370)
T cd05621 274 -ISKHAKNLICAFLTDREVRLGRNGVEEIKQHPFFKNDQ 311 (370)
T ss_pred -CCHHHHHHHHHHccCchhccCCCCHHHHhcCcccCCCC
Confidence 112344566678875554 389999999999987643
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found |
| >cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=266.22 Aligned_cols=228 Identities=22% Similarity=0.336 Sum_probs=169.7
Q ss_pred HHHHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 417 IRAINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 417 ~~~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
..+++++.....||+|+||.||+|... ++..+|+|.+.... ....+.+.+|+.++++++||||++++|++..++.
T Consensus 4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~ 79 (268)
T cd06624 4 EYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERD----SRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGF 79 (268)
T ss_pred ccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCC----HHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCE
Confidence 446677878889999999999999854 56789999875432 2334578999999999999999999999999999
Q ss_pred eEEEEEecCCCChHHHhccccC-C--------------------------cccccccCCeeecC-CCceEEecccccccc
Q 042735 496 SILIYEYLKRGSLATNLSNDAA-A--------------------------EELDISSKNVLLDL-EHKAHVSDFGIAKFL 547 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~~-~--------------------------~~~dlk~~NiLld~-~~~~kl~DFGla~~~ 547 (667)
.++|+||+++++|.+++..... . .|.||||+||+++. ++.+||+|||++...
T Consensus 80 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~ 159 (268)
T cd06624 80 FKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRL 159 (268)
T ss_pred EEEEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhheec
Confidence 9999999999999988764311 0 12399999999986 679999999999865
Q ss_pred cCCCCCcccccccccccCCCC--------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCC
Q 042735 548 KPDSSNWSALVGTYRYVAPDY--------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619 (667)
Q Consensus 548 ~~~~~~~~~~~Gt~~y~aPE~--------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (667)
...........|++.|+|||+ +.++|||||||++|||++|+.|+....... ........ ....+.++..
T Consensus 160 ~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~--~~~~~~~~-~~~~~~~~~~ 236 (268)
T cd06624 160 AGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQ--AAMFKVGM-FKIHPEIPES 236 (268)
T ss_pred ccCCCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChh--hhHhhhhh-hccCCCCCcc
Confidence 443333334568999999993 468999999999999999999975322100 00000000 0011122211
Q ss_pred CCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 620 ~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
. ...+.+++.+||+.+|++|||+.|++++.|+
T Consensus 237 ~------~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~ 268 (268)
T cd06624 237 L------SAEAKNFILRCFEPDPDKRASAHDLLQDPFL 268 (268)
T ss_pred c------CHHHHHHHHHHcCCCchhCCCHHHHHhCCCC
Confidence 1 1246678889999999999999999998763
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina |
| >cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=271.95 Aligned_cols=231 Identities=24% Similarity=0.369 Sum_probs=168.6
Q ss_pred HHHHHHHHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEE
Q 042735 413 YVEIIRAINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFC 490 (667)
Q Consensus 413 ~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~ 490 (667)
++.+.++.++|+..+.||+|+||.||+|.. .++..+|+|++.... .....+.+|+.+++++ +||||+++++++
T Consensus 10 ~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~-----~~~~~~~~e~~~l~~l~~h~~i~~~~~~~ 84 (286)
T cd06638 10 FDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH-----DIDEEIEAEYNILKALSDHPNVVKFYGMY 84 (286)
T ss_pred eecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc-----chHHHHHHHHHHHHHHhcCCCeeeeeeee
Confidence 345556778999999999999999999976 457789999865321 1234678899999999 699999999988
Q ss_pred E-----eCCceEEEEEecCCCChHHHhccc-----cC-----------------------CcccccccCCeeecCCCceE
Q 042735 491 S-----HARHSILIYEYLKRGSLATNLSND-----AA-----------------------AEELDISSKNVLLDLEHKAH 537 (667)
Q Consensus 491 ~-----~~~~~~lv~ey~~~g~L~~~l~~~-----~~-----------------------~~~~dlk~~NiLld~~~~~k 537 (667)
. .++..++||||+++|+|.+.+... .. ..|.|+||+||+++.++.+|
T Consensus 85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~k 164 (286)
T cd06638 85 YKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVK 164 (286)
T ss_pred eecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEE
Confidence 4 345689999999999998765321 00 11349999999999999999
Q ss_pred EecccccccccCCCCCcccccccccccCCCC-----------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh
Q 042735 538 VSDFGIAKFLKPDSSNWSALVGTYRYVAPDY-----------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM 606 (667)
Q Consensus 538 l~DFGla~~~~~~~~~~~~~~Gt~~y~aPE~-----------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~ 606 (667)
|+|||+++.............|++.|+|||+ +.++|||||||++|||+||+.|+....... ...
T Consensus 165 l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~---~~~-- 239 (286)
T cd06638 165 LVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMR---ALF-- 239 (286)
T ss_pred EccCCceeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchhH---HHh--
Confidence 9999999876543333344579999999993 558999999999999999999975322110 000
Q ss_pred hhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 607 RLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.......+....+ . .....+.+++.+||+.+|++|||+.||++++++
T Consensus 240 ~~~~~~~~~~~~~--~--~~~~~~~~li~~~l~~~p~~Rps~~ell~~~~~ 286 (286)
T cd06638 240 KIPRNPPPTLHQP--E--LWSNEFNDFIRKCLTKDYEKRPTVSDLLQHVFI 286 (286)
T ss_pred hccccCCCcccCC--C--CcCHHHHHHHHHHccCCcccCCCHHHHhhcccC
Confidence 0000011111111 0 011246678889999999999999999998764
|
Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear |
| >cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=264.70 Aligned_cols=229 Identities=21% Similarity=0.325 Sum_probs=170.4
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|+. .++..+|||++..... ........|.+|++++++++||||+++++++.+.+..++|
T Consensus 2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v 80 (267)
T cd08228 2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEM-MDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIV 80 (267)
T ss_pred cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeecccc-CCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEE
Confidence 5788899999999999999986 4678899998754222 1223456789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcc----cc------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 500 YEYLKRGSLATNLSN----DA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~----~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
+||+++|+|.+.+.. .. ...|.||||+||+++.++.++|+|||+++......
T Consensus 81 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~ 160 (267)
T cd08228 81 LELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT 160 (267)
T ss_pred EEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECccccceeccchh
Confidence 999999999876631 00 01133999999999999999999999998765433
Q ss_pred CCcccccccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 552 SNWSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
.......|++.|+|||+ +.++|||||||++|||+||+.|+..... ...... ...... ..++.... .
T Consensus 161 ~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~--~~~~~~-~~~~~~---~~~~~~~~--~ 232 (267)
T cd08228 161 TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM--NLFSLC-QKIEQC---DYPPLPTE--H 232 (267)
T ss_pred HHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccc--cHHHHH-HHHhcC---CCCCCChh--h
Confidence 33344578999999993 5679999999999999999999742210 001111 111111 11111111 1
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
....+.+++.+||+.+|++||++.||++.+...
T Consensus 233 ~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~ 265 (267)
T cd08228 233 YSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQM 265 (267)
T ss_pred cCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHh
Confidence 223567888899999999999999999988654
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase |
| >cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-31 Score=267.63 Aligned_cols=222 Identities=22% Similarity=0.377 Sum_probs=164.3
Q ss_pred cCCcCcceeecccCeEEEEEEe-----CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-----~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
++|+..+.||+|+||.||+|.. ..+..+|+|.+..... ......|.+|++++++++||||+++++++..++.
T Consensus 5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 81 (283)
T cd05090 5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINN---PQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQP 81 (283)
T ss_pred hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCC---HHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCc
Confidence 5678888999999999999974 2456799998864322 2334578999999999999999999999999999
Q ss_pred eEEEEEecCCCChHHHhcccc-----------------------------------------CCcccccccCCeeecCCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA-----------------------------------------AAEELDISSKNVLLDLEH 534 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~-----------------------------------------~~~~~dlk~~NiLld~~~ 534 (667)
.++||||+++|+|.+++.... ...|.||||+||+++.++
T Consensus 82 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~~~ 161 (283)
T cd05090 82 VCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQL 161 (283)
T ss_pred eEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEcCCC
Confidence 999999999999988874210 011339999999999999
Q ss_pred ceEEecccccccccCCC--CCcccccccccccCCCC------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhh
Q 042735 535 KAHVSDFGIAKFLKPDS--SNWSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVIN 605 (667)
Q Consensus 535 ~~kl~DFGla~~~~~~~--~~~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~ 605 (667)
.+||+|||+++...... .......++..|+|||+ +.++|||||||++|||+| |..||..... .....
T Consensus 162 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~----~~~~~ 237 (283)
T cd05090 162 HVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSN----QEVIE 237 (283)
T ss_pred cEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCH----HHHHH
Confidence 99999999998654322 11233456778999993 668999999999999999 8888743221 11111
Q ss_pred hhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 606 MRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
. ... ....+ .... ....+.+++.+||+.+|++||++.+|.+++.
T Consensus 238 ~-~~~--~~~~~-~~~~---~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~ 281 (283)
T cd05090 238 M-VRK--RQLLP-CSED---CPPRMYSLMTECWQEGPSRRPRFKDIHTRLR 281 (283)
T ss_pred H-HHc--CCcCC-CCCC---CCHHHHHHHHHHcccCcccCcCHHHHHHHhh
Confidence 1 111 01111 1111 1124667888999999999999999998875
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-31 Score=266.28 Aligned_cols=219 Identities=24% Similarity=0.400 Sum_probs=156.1
Q ss_pred eeecccCeEEEEEEeCC---CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 428 CIGSGRHGSVYRAELPS---KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 428 ~lg~g~~g~vy~~~~~~---~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
.||+|+||.||+|...+ +..+|+|++..... ......|.+|+.++++++||||++++|++.+....++||||++
T Consensus 2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 78 (269)
T cd05087 2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSAS---VQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCP 78 (269)
T ss_pred cccccCCceEEEEEEcCCCCceEEEEEecCCCCC---hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCC
Confidence 58999999999997643 35689998765322 2234578999999999999999999999999999999999999
Q ss_pred CCChHHHhccccC-----------------------------CcccccccCCeeecCCCceEEecccccccccCCCC--C
Q 042735 505 RGSLATNLSNDAA-----------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS--N 553 (667)
Q Consensus 505 ~g~L~~~l~~~~~-----------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~--~ 553 (667)
+|+|.+++..... ..|.||||+||+++.++.+||+|||+++....... .
T Consensus 79 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~ 158 (269)
T cd05087 79 LGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVT 158 (269)
T ss_pred CCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCccccccccCcceeec
Confidence 9999988753110 11239999999999999999999999975433221 1
Q ss_pred cccccccccccCCCC-------------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCC
Q 042735 554 WSALVGTYRYVAPDY-------------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE~-------------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (667)
.....|+..|+|||+ +.++|||||||++|||++ |+.||..... .......... .....+.+
T Consensus 159 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~----~~~~~~~~~~-~~~~~~~~ 233 (269)
T cd05087 159 PDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSD----EQVLTYTVRE-QQLKLPKP 233 (269)
T ss_pred CCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCCh----HHHHHHHhhc-ccCCCCCC
Confidence 223467889999993 458999999999999996 9999853221 1111110101 01111111
Q ss_pred CCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 620 ~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
... ......+.+++..|| .+|++|||++||.+.|.
T Consensus 234 ~~~-~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l~ 268 (269)
T cd05087 234 RLK-LPLSDRWYEVMQFCW-LQPEQRPSAEEVHLLLS 268 (269)
T ss_pred ccC-CCCChHHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence 100 001123556778999 58999999999998875
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells |
| >cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-31 Score=266.82 Aligned_cols=219 Identities=25% Similarity=0.386 Sum_probs=153.3
Q ss_pred eeecccCeEEEEEEeCCCc---eEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 428 CIGSGRHGSVYRAELPSKE---FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 428 ~lg~g~~g~vy~~~~~~~~---~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
.||+|+||.||+|+..++. .+++|.+.... .....+.|.+|+.+++.++|||||+++|++.+....++||||++
T Consensus 2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 78 (268)
T cd05086 2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANA---SSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCE 78 (268)
T ss_pred cCCCCcCceEEEEEEEcCCCcceEEEEEecCCC---ChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCC
Confidence 5899999999999754432 45566654322 12345679999999999999999999999999999999999999
Q ss_pred CCChHHHhccccC----------------------------CcccccccCCeeecCCCceEEecccccccccCCC--CCc
Q 042735 505 RGSLATNLSNDAA----------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS--SNW 554 (667)
Q Consensus 505 ~g~L~~~l~~~~~----------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~--~~~ 554 (667)
+|+|.+++..... ..|.||||+|||++.++.+||+|||+++...... ...
T Consensus 79 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~ 158 (268)
T cd05086 79 LGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETE 158 (268)
T ss_pred CCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcCCccEEecccccccccCcchhhhcc
Confidence 9999988753210 1133999999999999999999999986432211 112
Q ss_pred ccccccccccCCCC-------------CCCchHHHHHHHHHHHHhC-CCCCCCCccCCCChhhhhhhhccccCCCCCCCC
Q 042735 555 SALVGTYRYVAPDY-------------RKKCDVYSFRVLALEVIKG-KHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~-------------~~~~DV~sfGvvl~ElltG-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (667)
....|+..|+|||+ +.++|||||||++|||+++ ..|+.....................++.++...
T Consensus 159 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (268)
T cd05086 159 DDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDREVLNHVIKDQQVKLFKPQLELPY 238 (268)
T ss_pred cCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhhcccccCCCccCCCC
Confidence 34568899999994 3579999999999999975 667643221000000000111112222222221
Q ss_pred CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 621 ~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
. ..+.+++..|| .+|++||+|+||++.|.
T Consensus 239 ~------~~~~~l~~~c~-~~P~~Rp~~~~i~~~l~ 267 (268)
T cd05086 239 S------ERWYEVLQFCW-LSPEKRATAEEVHRLLT 267 (268)
T ss_pred c------HHHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence 1 24556777899 67999999999998875
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage |
| >cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=263.03 Aligned_cols=220 Identities=23% Similarity=0.396 Sum_probs=166.2
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|+..+.||+|+||.||+|...++..+|+|.+.... ...+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus 6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 80 (261)
T cd05072 6 ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT-----MSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIIT 80 (261)
T ss_pred HHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCc-----hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEE
Confidence 5788889999999999999998888889999875421 12457899999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCC-C
Q 042735 501 EYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-N 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~ 553 (667)
||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++....... .
T Consensus 81 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~ 160 (261)
T cd05072 81 EYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTA 160 (261)
T ss_pred ecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccceecCCCceec
Confidence 99999999988753211 11239999999999999999999999987543221 1
Q ss_pred cccccccccccCCCC------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 WSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....++..|+|||+ +.++|||||||++|||+| |+.||..... ..... ....... .+.. .. .
T Consensus 161 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~----~~~~~-~~~~~~~--~~~~-~~---~ 229 (261)
T cd05072 161 REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSN----SDVMS-ALQRGYR--MPRM-EN---C 229 (261)
T ss_pred cCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCH----HHHHH-HHHcCCC--CCCC-CC---C
Confidence 122346778999993 568999999999999999 9999753211 01111 1111111 1111 11 1
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
...+.+++.+||..+|++||+++++.+.|.
T Consensus 230 ~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~ 259 (261)
T cd05072 230 PDELYDIMKTCWKEKAEERPTFDYLQSVLD 259 (261)
T ss_pred CHHHHHHHHHHccCCcccCcCHHHHHHHHh
Confidence 234677888999999999999999998875
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa |
| >cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=270.28 Aligned_cols=232 Identities=20% Similarity=0.252 Sum_probs=170.7
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
.|+..+.||+|+||.||+|.. .++..+|||++...... .......+.+|+.++++++|||||++++++.+++..++||
T Consensus 1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 79 (285)
T cd05605 1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIK-KRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVL 79 (285)
T ss_pred CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhh-hhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEE
Confidence 366778999999999999986 46788999988643211 1122345788999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc---C-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 501 EYLKRGSLATNLSNDA---A-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~---~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||+++|+|.+.+.... . ..|.||||+||++++++.+||+|||+++...... ..
T Consensus 80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~-~~ 158 (285)
T cd05605 80 TLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGE-TI 158 (285)
T ss_pred eccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCceecCCCC-cc
Confidence 9999999987764321 0 1133999999999999999999999998754322 22
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
....||+.|+||| ++.++|||||||++|||++|+.||........... ....+.......... ...
T Consensus 159 ~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~ 230 (285)
T cd05605 159 RGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREE-----VERRVKEDQEEYSEK---FSE 230 (285)
T ss_pred ccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhHHHH-----HHHHhhhcccccCcc---cCH
Confidence 3457999999999 46789999999999999999999863221100000 001111111110111 122
Q ss_pred HHHHHHHhccccCCCCCC-----CHHHHHHHHHHhhhhhc
Q 042735 629 SIMEVAFSCLDVSPESRP-----TMQTITQQLLFSLVYFS 663 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~~ 663 (667)
.+.+++.+||+.||++|| ++++++++.|+....|.
T Consensus 231 ~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~~~~ 270 (285)
T cd05605 231 AARSICRQLLTKDPGFRLGCRGEGAEEVKAHPFFRTANFK 270 (285)
T ss_pred HHHHHHHHHccCCHHHhcCCCCCCHHHHhcCcCccCCCHH
Confidence 466788899999999999 89999999998765443
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, |
| >PTZ00283 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-31 Score=286.68 Aligned_cols=227 Identities=27% Similarity=0.352 Sum_probs=168.6
Q ss_pred HHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC---
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR--- 494 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~--- 494 (667)
..++|...+.||+|+||.||+|+. .+++.||||++...... ......+.+|+.++..++|+||+++++.+...+
T Consensus 30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~--~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~ 107 (496)
T PTZ00283 30 QAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMS--EADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRN 107 (496)
T ss_pred cCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCC--HHHHHHHHHHHHHHhcCCCCcEEEeecceecccccC
Confidence 346888999999999999999975 56889999998653221 233456889999999999999999988775432
Q ss_pred -----ceEEEEEecCCCChHHHhcccc----------------------------CCcccccccCCeeecCCCceEEecc
Q 042735 495 -----HSILIYEYLKRGSLATNLSNDA----------------------------AAEELDISSKNVLLDLEHKAHVSDF 541 (667)
Q Consensus 495 -----~~~lv~ey~~~g~L~~~l~~~~----------------------------~~~~~dlk~~NiLld~~~~~kl~DF 541 (667)
..++||||+++|+|.+.+.... ...|.||||+|||++.++.+||+||
T Consensus 108 ~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~~vkL~DF 187 (496)
T PTZ00283 108 PENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDF 187 (496)
T ss_pred cccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCCCEEEEec
Confidence 3679999999999988774311 1123499999999999999999999
Q ss_pred cccccccCCC--CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccC
Q 042735 542 GIAKFLKPDS--SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD 613 (667)
Q Consensus 542 Gla~~~~~~~--~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~ 613 (667)
|+++...... ......+||+.|+||| |+.++|||||||++|||+||+.||..... ............+
T Consensus 188 Gls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~----~~~~~~~~~~~~~ 263 (496)
T PTZ00283 188 GFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENM----EEVMHKTLAGRYD 263 (496)
T ss_pred ccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCH----HHHHHHHhcCCCC
Confidence 9998754321 1234568999999999 56789999999999999999999863221 1111111111111
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 614 PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
+ ++... ...+.+++.+||+.+|++||++.+++++.++.
T Consensus 264 ~-~~~~~------~~~l~~li~~~L~~dP~~RPs~~ell~~p~~~ 301 (496)
T PTZ00283 264 P-LPPSI------SPEMQEIVTALLSSDPKRRPSSSKLLNMPICK 301 (496)
T ss_pred C-CCCCC------CHHHHHHHHHHcccChhhCcCHHHHHhCHHHH
Confidence 1 11111 12466788899999999999999999887654
|
|
| >cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=276.18 Aligned_cols=223 Identities=25% Similarity=0.317 Sum_probs=166.5
Q ss_pred ceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 427 YCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
+.||+|+||.||+|+.. ++..+|||++...... .......+.+|++++..+ +||||+++++++.+.+..++||||++
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~ 79 (318)
T cd05570 1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVIL-QDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVN 79 (318)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHh-hhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCC
Confidence 36899999999999875 4678999988643211 112345677899999888 69999999999999999999999999
Q ss_pred CCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccccccc
Q 042735 505 RGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560 (667)
Q Consensus 505 ~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt 560 (667)
+|+|...+.... ...|.||||+||+++.++.+||+|||+++............+||
T Consensus 80 ~~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g~ 159 (318)
T cd05570 80 GGDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFCGT 159 (318)
T ss_pred CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCcccceecC
Confidence 999987765431 11234999999999999999999999997643333333456799
Q ss_pred ccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHH
Q 042735 561 YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634 (667)
Q Consensus 561 ~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (667)
+.|+||| |+.++|||||||++|||+||+.||...... ........ .....+... ...+.+++
T Consensus 160 ~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~----~~~~~i~~--~~~~~~~~~------~~~~~~li 227 (318)
T cd05570 160 PDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDED----ELFQSILE--DEVRYPRWL------SKEAKSIL 227 (318)
T ss_pred ccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHH----HHHHHHHc--CCCCCCCcC------CHHHHHHH
Confidence 9999999 567899999999999999999998633211 11111000 011122111 12466788
Q ss_pred HhccccCCCCCCCH-----HHHHHHHHHhhhhh
Q 042735 635 FSCLDVSPESRPTM-----QTITQQLLFSLVYF 662 (667)
Q Consensus 635 ~~Cl~~~p~~RPt~-----~ev~~~l~~~~~~~ 662 (667)
.+||+.||++|||+ .+++++.|+..+.+
T Consensus 228 ~~~l~~dP~~R~s~~~~~~~~ll~~~~~~~~~~ 260 (318)
T cd05570 228 KSFLTKNPEKRLGCLPTGEQDIKGHPFFREIDW 260 (318)
T ss_pred HHHccCCHHHcCCCCCCCHHHHhcCCCcCCCCH
Confidence 89999999999999 99999988876544
|
Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re |
| >KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-32 Score=274.55 Aligned_cols=221 Identities=24% Similarity=0.415 Sum_probs=170.5
Q ss_pred CCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~lv~ 500 (667)
.|+..+.||+||.+.||++...+.+.+|+|++..... +......|..|+..|.++. |.+||++|+|-..++.+|+||
T Consensus 362 ~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~--D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvm 439 (677)
T KOG0596|consen 362 EYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEA--DNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVM 439 (677)
T ss_pred hhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhc--CHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEe
Confidence 4566778999999999999998889999998764322 2334568999999999997 999999999999999999999
Q ss_pred EecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC--
Q 042735 501 EYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN-- 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~-- 553 (667)
||-+ -+|..+|..... ..|-||||.|.|+ -.|.+||+|||+|..+..+...
T Consensus 440 E~Gd-~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLl-VkG~LKLIDFGIA~aI~~DTTsI~ 517 (677)
T KOG0596|consen 440 ECGD-IDLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLL-VKGRLKLIDFGIANAIQPDTTSIV 517 (677)
T ss_pred eccc-ccHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHhceeecCCCcccEEE-EeeeEEeeeechhcccCcccccee
Confidence 9843 478777754321 1234999999988 5689999999999988766432
Q ss_pred cccccccccccCCC------C-----------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCC
Q 042735 554 WSALVGTYRYVAPD------Y-----------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRL 616 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~-----------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (667)
....+||+.||+|| + .+++||||+|||||+|+.|++||+.... ...++..+.+|.-
T Consensus 518 kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n-------~~aKl~aI~~P~~ 590 (677)
T KOG0596|consen 518 KDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIIN-------QIAKLHAITDPNH 590 (677)
T ss_pred eccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHH-------HHHHHHhhcCCCc
Confidence 24568999999999 1 3579999999999999999999863221 1122334455522
Q ss_pred ----CCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 617 ----PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 617 ----~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
|...+. .+++++|..||+.||.+|||..|++++.|..
T Consensus 591 ~Iefp~~~~~-----~~li~~mK~CL~rdPkkR~si~eLLqhpFl~ 631 (677)
T KOG0596|consen 591 EIEFPDIPEN-----DELIDVMKCCLARDPKKRWSIPELLQHPFLQ 631 (677)
T ss_pred cccccCCCCc-----hHHHHHHHHHHhcCcccCCCcHHHhcCcccc
Confidence 222222 1377888999999999999999999987654
|
|
| >cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=274.64 Aligned_cols=223 Identities=23% Similarity=0.363 Sum_probs=164.1
Q ss_pred ceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHh-cCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 427 YCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-IRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~-l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
+.||+|+||.||+|+.. ++..+|||.+....... ....+.+..|..++.. ++||||+++++++.+.+..++||||++
T Consensus 1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~ 79 (316)
T cd05619 1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLM-DDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLN 79 (316)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhh-cchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCC
Confidence 36899999999999875 46789999876432111 1123456778888876 489999999999999999999999999
Q ss_pred CCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccccccc
Q 042735 505 RGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560 (667)
Q Consensus 505 ~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt 560 (667)
+|+|.+.+.... ...|.||||+|||++.++.+||+|||+++.............||
T Consensus 80 ~g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt 159 (316)
T cd05619 80 GGDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGT 159 (316)
T ss_pred CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCceeeecCC
Confidence 999988775421 11234999999999999999999999998643333333456799
Q ss_pred ccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHH
Q 042735 561 YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634 (667)
Q Consensus 561 ~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (667)
+.|+||| |+.++|||||||++|||+||+.||..... ..... .+ ....+..+...+ ..+.+++
T Consensus 160 ~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~----~~~~~-~i-~~~~~~~~~~~~------~~~~~li 227 (316)
T cd05619 160 PDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDE----EELFQ-SI-RMDNPCYPRWLT------REAKDIL 227 (316)
T ss_pred ccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCH----HHHHH-HH-HhCCCCCCccCC------HHHHHHH
Confidence 9999999 57789999999999999999999853221 01111 11 111122222111 2356788
Q ss_pred HhccccCCCCCCCHH-HHHHHHHHhhhhh
Q 042735 635 FSCLDVSPESRPTMQ-TITQQLLFSLVYF 662 (667)
Q Consensus 635 ~~Cl~~~p~~RPt~~-ev~~~l~~~~~~~ 662 (667)
.+||+.+|++||++. ++.++.++..+.+
T Consensus 228 ~~~l~~~P~~R~~~~~~l~~h~~~~~~~~ 256 (316)
T cd05619 228 VKLFVREPERRLGVKGDIRQHPFFREIDW 256 (316)
T ss_pred HHHhccCHhhcCCChHHHHcCcccCCCCH
Confidence 899999999999996 8888888766544
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in |
| >cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-32 Score=280.45 Aligned_cols=221 Identities=24% Similarity=0.343 Sum_probs=165.3
Q ss_pred ceeecccCeEEEEEEe----CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEe
Q 042735 427 YCIGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEY 502 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~----~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey 502 (667)
+.||+|+||.||+++. .++..+|+|++..... .......+.+|++++++++|||||++++++.+++..|+||||
T Consensus 2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 79 (318)
T cd05582 2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATL--KVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDF 79 (318)
T ss_pred ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHh--hhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcC
Confidence 5799999999999864 3578899998864321 122345678899999999999999999999999999999999
Q ss_pred cCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccccc
Q 042735 503 LKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV 558 (667)
Q Consensus 503 ~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~ 558 (667)
+++|+|.+.+..... ..|.||||+||+++.++.+||+|||+++.............
T Consensus 80 ~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~ 159 (318)
T cd05582 80 LRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFC 159 (318)
T ss_pred CCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCceeccc
Confidence 999999887754321 12349999999999999999999999986554433344568
Q ss_pred ccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHH
Q 042735 559 GTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632 (667)
Q Consensus 559 Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (667)
||+.|+||| ++.++|||||||++|||+||+.||...... ......... ...++...+ ..+.+
T Consensus 160 g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~----~~~~~i~~~--~~~~p~~~~------~~~~~ 227 (318)
T cd05582 160 GTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRK----ETMTMILKA--KLGMPQFLS------PEAQS 227 (318)
T ss_pred CChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCHH----HHHHHHHcC--CCCCCCCCC------HHHHH
Confidence 999999999 467899999999999999999998632211 111111011 111221111 23567
Q ss_pred HHHhccccCCCCCCC-----HHHHHHHHHHhhhh
Q 042735 633 VAFSCLDVSPESRPT-----MQTITQQLLFSLVY 661 (667)
Q Consensus 633 ~~~~Cl~~~p~~RPt-----~~ev~~~l~~~~~~ 661 (667)
++.+||+.||++||+ .++++.+.|+..+.
T Consensus 228 li~~~l~~~P~~R~~a~~~~~~~~~~~~~~~~~~ 261 (318)
T cd05582 228 LLRALFKRNPANRLGAGPDGVEEIKRHPFFSTID 261 (318)
T ss_pred HHHHHhhcCHhHcCCCCCCCHHHHhCCCCcCCCC
Confidence 888999999999999 67788887776543
|
Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate |
| >cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-31 Score=275.28 Aligned_cols=228 Identities=21% Similarity=0.310 Sum_probs=166.6
Q ss_pred ceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 427 YCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
+.||+|+||.||+|+.. ++..+|+|++...... .....+.+.+|+.++.++ +||||+++++++.+.+..++||||++
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~ 79 (327)
T cd05617 1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVH-DDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVN 79 (327)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhh-hhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCC
Confidence 36999999999999864 5678999998653221 122345688999999888 59999999999999999999999999
Q ss_pred CCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccccccc
Q 042735 505 RGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560 (667)
Q Consensus 505 ~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt 560 (667)
+|+|...+.... ...|.||||+|||++.++.+||+|||+++............+||
T Consensus 80 ~~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt 159 (327)
T cd05617 80 GGDLMFHMQRQRKLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGT 159 (327)
T ss_pred CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCCCEEEeccccceeccCCCCceecccCC
Confidence 999987664321 11244999999999999999999999998543333334457899
Q ss_pred ccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccC--CCCCCCCCchHHHHHHHHH
Q 042735 561 YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD--PRLPPPSPDVQGKLISIME 632 (667)
Q Consensus 561 ~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 632 (667)
+.|+||| |+.++|||||||++|||+||+.||.......... ........+.. ...+...+ ..+.+
T Consensus 160 ~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~------~~~~~ 232 (327)
T cd05617 160 PNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMN-TEDYLFQVILEKPIRIPRFLS------VKASH 232 (327)
T ss_pred cccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccc-cHHHHHHHHHhCCCCCCCCCC------HHHHH
Confidence 9999999 5679999999999999999999986322111000 00000011111 11222111 23567
Q ss_pred HHHhccccCCCCCCC------HHHHHHHHHHhhhhh
Q 042735 633 VAFSCLDVSPESRPT------MQTITQQLLFSLVYF 662 (667)
Q Consensus 633 ~~~~Cl~~~p~~RPt------~~ev~~~l~~~~~~~ 662 (667)
++.+||+.||++||+ ++++.++.||....|
T Consensus 233 li~~~L~~dP~~R~~~~~~~~~~~i~~h~~f~~~~~ 268 (327)
T cd05617 233 VLKGFLNKDPKERLGCQPQTGFSDIKSHTFFRSIDW 268 (327)
T ss_pred HHHHHhccCHHHcCCCCCCCCHHHHHcCCCCCCCCH
Confidence 888999999999998 579999988876544
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways |
| >cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=269.78 Aligned_cols=223 Identities=23% Similarity=0.434 Sum_probs=164.1
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCc----eEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKE----FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~----~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
.+|+..+.||+|+||.||+|.+. ++. .+|+|++.... .....++|.+|+.+++.++||||++++|+|... .
T Consensus 7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~ 82 (316)
T cd05108 7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT---SPKANKEILDEAYVMASVDNPHVCRLLGICLTS-T 82 (316)
T ss_pred hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-C
Confidence 46888999999999999999863 333 38999876422 123456799999999999999999999999765 5
Q ss_pred eEEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCC
Q 042735 496 SILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
.++|+||+++|+|.+.+..... ..|.||||+|||++.++.+||+|||+++.....
T Consensus 83 ~~~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~ 162 (316)
T cd05108 83 VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAD 162 (316)
T ss_pred ceeeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEccccccccccCC
Confidence 6789999999999887764321 123499999999999999999999999976543
Q ss_pred CCCc--ccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 551 SSNW--SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 551 ~~~~--~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
.... ....++..|+||| ++.++|||||||++|||+| |+.|++.... ......... ....+.+.
T Consensus 163 ~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~-----~~~~~~~~~--~~~~~~~~- 234 (316)
T cd05108 163 EKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-----SEISSILEK--GERLPQPP- 234 (316)
T ss_pred CcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCH-----HHHHHHHhC--CCCCCCCC-
Confidence 3221 1233467899999 4678999999999999998 9999753221 111111111 11111111
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
. ....+.+++.+||+.+|++||++.+++.++...
T Consensus 235 ~---~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~ 268 (316)
T cd05108 235 I---CTIDVYMIMVKCWMIDADSRPKFRELIIEFSKM 268 (316)
T ss_pred C---CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 1 123567888899999999999999999987654
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor |
| >cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-31 Score=269.18 Aligned_cols=226 Identities=23% Similarity=0.398 Sum_probs=170.7
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
.+|+..+.||+|+||.||+|.. .++..+|+|.+..... ...+.+.+|+.++++++||||+++++++..++..++|
T Consensus 20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~----~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv 95 (296)
T cd06654 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ----PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV 95 (296)
T ss_pred cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCc----chHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEe
Confidence 4677888999999999999975 5678899998764322 2245688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-----------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 500 YEYLKRGSLATNLSNDA-----------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-----------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
|||+++|+|.+++.... ...|.||||+||+++.++.+||+|||+++...........
T Consensus 96 ~e~~~~~~L~~~~~~~~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~ 175 (296)
T cd06654 96 MEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST 175 (296)
T ss_pred ecccCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccchhccccccccCc
Confidence 99999999988775321 1123499999999999999999999999865544333344
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
..|++.|+||| ++.++|||||||++|||+||+.||...... ..... .......+...+. .....+
T Consensus 176 ~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~---~~~~~----~~~~~~~~~~~~~--~~~~~l 246 (296)
T cd06654 176 MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL---RALYL----IATNGTPELQNPE--KLSAIF 246 (296)
T ss_pred ccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHH---HhHHH----HhcCCCCCCCCcc--ccCHHH
Confidence 57899999999 357899999999999999999998532210 00000 0011111101111 112346
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.+++.+||..+|++|||+.|++++.|+..
T Consensus 247 ~~li~~~l~~~p~~Rpt~~eil~~~~~~~ 275 (296)
T cd06654 247 RDFLNRCLDMDVEKRGSAKELLQHQFLKI 275 (296)
T ss_pred HHHHHHHCcCCcccCcCHHHHhhChhhhc
Confidence 67888999999999999999999888753
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=261.12 Aligned_cols=223 Identities=26% Similarity=0.453 Sum_probs=166.2
Q ss_pred cCCcCcceeecccCeEEEEEEeCC----CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS----KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~----~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
++|+..+.||+|+||.||+|.... ...+|||.+..... ......|.+|+.++++++||||+++++++.+.+..
T Consensus 4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~ 80 (266)
T cd05033 4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSS---DKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPV 80 (266)
T ss_pred HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCC---hHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCce
Confidence 568889999999999999998642 35789998764322 23356799999999999999999999999999999
Q ss_pred EEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
++||||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++......
T Consensus 81 ~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~ 160 (266)
T cd05033 81 MIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSE 160 (266)
T ss_pred EEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchhhcccccc
Confidence 999999999999988754211 1233999999999999999999999999765222
Q ss_pred CCcc--cccccccccCCCC------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCc
Q 042735 552 SNWS--ALVGTYRYVAPDY------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622 (667)
Q Consensus 552 ~~~~--~~~Gt~~y~aPE~------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (667)
.... ...+++.|+|||+ +.++||||||+++|||+| |..||.... ........ .... ..+.+ ..
T Consensus 161 ~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~----~~~~~~~~-~~~~--~~~~~-~~ 232 (266)
T cd05033 161 ATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMS----NQDVIKAV-EDGY--RLPPP-MD 232 (266)
T ss_pred cceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCC----HHHHHHHH-HcCC--CCCCC-CC
Confidence 2111 2345678999993 568999999999999998 999974221 11111111 1100 11111 11
Q ss_pred hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 623 VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 623 ~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
....+.+++.+||+.+|++||+++||+++|..
T Consensus 233 ---~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~ 264 (266)
T cd05033 233 ---CPSALYQLMLDCWQKDRNERPTFSQIVSTLDK 264 (266)
T ss_pred ---CCHHHHHHHHHHcCCCcccCcCHHHHHHHHHh
Confidence 12346788899999999999999999998864
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment |
| >KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=256.42 Aligned_cols=237 Identities=21% Similarity=0.273 Sum_probs=169.4
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe--CCce
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH--ARHS 496 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~--~~~~ 496 (667)
+++|+..+.|++|.||.||+|+. ++++.||.|+++....... ..-...|||.++.+++|||||.+..+... -+..
T Consensus 75 v~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~G--FPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~i 152 (419)
T KOG0663|consen 75 VEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEG--FPITSLREINILLKARHPNIVEVKEVVVGSNMDKI 152 (419)
T ss_pred HHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCC--CcchhHHHHHHHHhcCCCCeeeeEEEEecccccee
Confidence 45677888999999999999975 5688999999875432211 12246799999999999999999988764 4679
Q ss_pred EEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
|+|||||+. +|...+.... ...|.|||++|+|+...|.+||+|||+||.+....
T Consensus 153 y~VMe~~Eh-DLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~ 231 (419)
T KOG0663|consen 153 YIVMEYVEH-DLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLAREYGSPL 231 (419)
T ss_pred eeeHHHHHh-hHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhceeEecccchhheeeccCCcEEecccchhhhhcCCc
Confidence 999999986 6665554321 12345999999999999999999999999887766
Q ss_pred CCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhh----------hccc--c
Q 042735 552 SNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR----------LDEM--L 612 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~----------~~~~--~ 612 (667)
..+|..+-|..|-||| |+...|+||+|||+.||+++++-|...+.+.....+.... ..+. +
T Consensus 232 k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~ 311 (419)
T KOG0663|consen 232 KPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAV 311 (419)
T ss_pred ccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCccccCCCccccchh
Confidence 6677788999999999 8899999999999999999997654322211111110000 0000 0
Q ss_pred -CCCCCCCCC-chH----H--HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 613 -DPRLPPPSP-DVQ----G--KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 613 -~~~~~~~~~-~~~----~--~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
....+.... ... . -...-.+++..-+..||.+|-|+.|.+++-||..
T Consensus 312 k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~h~~F~e 366 (419)
T KOG0663|consen 312 KKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLKHEYFRE 366 (419)
T ss_pred hccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhccccccc
Confidence 000000000 000 0 0023345666789999999999999999998865
|
|
| >cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=262.22 Aligned_cols=218 Identities=26% Similarity=0.458 Sum_probs=163.7
Q ss_pred CCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
+|+..+.||+|+||.||+|..+++..+|+|.+..... ....|.+|++++++++||||+++++++.+.+..++|||
T Consensus 5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e 79 (256)
T cd05059 5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAM-----SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTE 79 (256)
T ss_pred HcchhhhhccCCCceEEEeEecCCccEEEEEeccCCC-----CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEe
Confidence 5778889999999999999987777899998754221 23468899999999999999999999999999999999
Q ss_pred ecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC-cc
Q 042735 502 YLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN-WS 555 (667)
Q Consensus 502 y~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~-~~ 555 (667)
|+++++|.+++..... ..|.|+||+||+++.++.+||+|||+++........ ..
T Consensus 80 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~ 159 (256)
T cd05059 80 YMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQ 159 (256)
T ss_pred cCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCCcEEECCcccceecccccccccC
Confidence 9999999988753211 123499999999999999999999999865432211 11
Q ss_pred cccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 556 ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
...++..|+||| ++.++|||||||++|||+| |+.||...... ... ...........+.. ...
T Consensus 160 ~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~----~~~-~~~~~~~~~~~~~~------~~~ 228 (256)
T cd05059 160 GTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNS----EVV-ESVSAGYRLYRPKL------APT 228 (256)
T ss_pred CCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHH----HHH-HHHHcCCcCCCCCC------CCH
Confidence 122445799999 4568999999999999999 78887532211 111 11111111112211 123
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHH
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQL 655 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l 655 (667)
.+.+++.+||..+|++||||.|+++.+
T Consensus 229 ~~~~li~~cl~~~p~~Rpt~~~~l~~l 255 (256)
T cd05059 229 EVYTIMYSCWHEKPEDRPAFKKLLSQL 255 (256)
T ss_pred HHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence 577889999999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-32 Score=280.62 Aligned_cols=303 Identities=21% Similarity=0.183 Sum_probs=274.1
Q ss_pred CcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEccc
Q 042735 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALEN 83 (667)
Q Consensus 5 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~ 83 (667)
-+.||+++|++..+-+..|.++++|+.++|..|.++ .+|...+...+|+.|+|.+|.|+..-...+.. ..|++|||+.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 467999999999888888999999999999999998 68886666778999999999987554445554 5699999999
Q ss_pred ccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccC
Q 042735 84 NHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIA 163 (667)
Q Consensus 84 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 163 (667)
|.++......|....++++|+|++|.|+..--.+|.++.+|..|.|++|+++..++..|..+++|+.|+|..|+|.-.--
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 99987766777778899999999999998888899999999999999999998888999999999999999999965556
Q ss_pred ccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCC
Q 042735 164 SNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTK 243 (667)
Q Consensus 164 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 243 (667)
..|.++++|+.|.|..|.+...-...|..|.++++|+|..|++...-..++-+|++|+.|+|++|.+....++++...++
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 78999999999999999999888889999999999999999998777788899999999999999999999999999999
Q ss_pred CCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCcCcc
Q 042735 244 LEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPS 308 (667)
Q Consensus 244 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ip~ 308 (667)
|++|+|++|+++...+..|..+..|+.|+|++|.+...-...|..+.+|+.|||++|.++..|.+
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 99999999999999999999999999999999998776677889999999999999999876655
|
|
| >cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=276.07 Aligned_cols=224 Identities=23% Similarity=0.367 Sum_probs=165.5
Q ss_pred cCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHA 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~ 493 (667)
+++...+.||+|+||.||+|.+. .+..||||++..... ....+.+.+|++++.++. |||||+++|+|...
T Consensus 37 ~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~---~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~ 113 (401)
T cd05107 37 DNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTAR---SSEKQALMSELKIMSHLGPHLNIVNLLGACTKG 113 (401)
T ss_pred HHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCC---hhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccC
Confidence 45667789999999999999853 245799999875422 122346899999999998 99999999999999
Q ss_pred CceEEEEEecCCCChHHHhcccc---------------------------------------------------------
Q 042735 494 RHSILIYEYLKRGSLATNLSNDA--------------------------------------------------------- 516 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~--------------------------------------------------------- 516 (667)
+..++||||+++|+|.++++...
T Consensus 114 ~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (401)
T cd05107 114 GPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQ 193 (401)
T ss_pred CCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchh
Confidence 99999999999999998875321
Q ss_pred -----------------------------------------------------------------CCcccccccCCeeec
Q 042735 517 -----------------------------------------------------------------AAEELDISSKNVLLD 531 (667)
Q Consensus 517 -----------------------------------------------------------------~~~~~dlk~~NiLld 531 (667)
...|.||||+|||++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrdlkp~NiLl~ 273 (401)
T cd05107 194 DMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKNCVHRDLAARNVLIC 273 (401)
T ss_pred cchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCcCcccCCcceEEEe
Confidence 001339999999999
Q ss_pred CCCceEEecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChh
Q 042735 532 LEHKAHVSDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPS 602 (667)
Q Consensus 532 ~~~~~kl~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~ 602 (667)
.++.+||+|||+++....... ......|++.||||| ++.++|||||||++|||++ |+.||..... ..
T Consensus 274 ~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~----~~ 349 (401)
T cd05107 274 EGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPM----NE 349 (401)
T ss_pred CCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCc----hH
Confidence 999999999999986533221 122345788999999 4678999999999999998 8888753211 11
Q ss_pred hhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 603 VINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.....+..-..+..+.. ....+.+++.+||..+|++||+++||++.|..
T Consensus 350 ~~~~~~~~~~~~~~p~~------~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~ 398 (401)
T cd05107 350 QFYNAIKRGYRMAKPAH------ASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGD 398 (401)
T ss_pred HHHHHHHcCCCCCCCCC------CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHH
Confidence 11111111111111111 12356788889999999999999999998865
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D |
| >cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-32 Score=286.78 Aligned_cols=232 Identities=20% Similarity=0.271 Sum_probs=165.8
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|+. .+++.+|||.+...... .....+.+.+|++++++++||||+++++++.+++..++|
T Consensus 1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~-~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv 79 (376)
T cd05598 1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVL-MRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV 79 (376)
T ss_pred CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHH-hhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEE
Confidence 3688899999999999999976 45788999987542111 112245688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCC-----
Q 042735 500 YEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD----- 550 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~----- 550 (667)
|||+++|+|.+.+..... ..|.||||+|||++.++.+||+|||+|+.....
T Consensus 80 ~E~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~ 159 (376)
T cd05598 80 MDYIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKY 159 (376)
T ss_pred EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCCccccccccccc
Confidence 999999999987754321 123499999999999999999999998532100
Q ss_pred --------------------------------------CCCcccccccccccCCC------CCCCchHHHHHHHHHHHHh
Q 042735 551 --------------------------------------SSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK 586 (667)
Q Consensus 551 --------------------------------------~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt 586 (667)
.......+||+.||||| |+.++|||||||++|||+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~ 239 (376)
T cd05598 160 YQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV 239 (376)
T ss_pred cccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeehhh
Confidence 00012357999999999 5778999999999999999
Q ss_pred CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCC---CHHHHHHHHHHhhhhh
Q 042735 587 GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRP---TMQTITQQLLFSLVYF 662 (667)
Q Consensus 587 G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RP---t~~ev~~~l~~~~~~~ 662 (667)
|+.||...... ...............+.. ... ...+.+++.+|+ .+|++|+ |+.|++++.|+....+
T Consensus 240 G~~Pf~~~~~~----~~~~~i~~~~~~~~~~~~-~~~---s~~~~~li~~l~-~~p~~R~~~~t~~ell~h~~~~~~~~ 309 (376)
T cd05598 240 GQPPFLADTPA----ETQLKVINWETTLHIPSQ-AKL---SREASDLILRLC-CGAEDRLGKNGADEIKAHPFFKGIDF 309 (376)
T ss_pred CCCCCCCCCHH----HHHHHHhccCccccCCCC-CCC---CHHHHHHHHHHh-cCHhhcCCCCCHHHHhCCCCcCCCCH
Confidence 99998633211 000000000000111111 111 113345555655 4999999 9999999999876443
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. |
| >cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=265.25 Aligned_cols=222 Identities=27% Similarity=0.479 Sum_probs=165.6
Q ss_pred cCCcCcceeecccCeEEEEEEeCC------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
++|...+.||+|+||.||+|...+ +..+|||.+..... ....+.|.+|++++++++||||+++++++....
T Consensus 5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~ 81 (280)
T cd05049 5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETAS---NDARKDFEREAELLTNFQHENIVKFYGVCTEGD 81 (280)
T ss_pred HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCC---HHHHHHHHHHHHHHHhcCCCCchheeeEEecCC
Confidence 457778899999999999997533 46799998865322 223467999999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhccccC--------------------------------------CcccccccCCeeecCCCce
Q 042735 495 HSILIYEYLKRGSLATNLSNDAA--------------------------------------AEELDISSKNVLLDLEHKA 536 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~~--------------------------------------~~~~dlk~~NiLld~~~~~ 536 (667)
..++||||+++|+|.+++..... ..|.||||+||+++.++.+
T Consensus 82 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~ 161 (280)
T cd05049 82 PPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVV 161 (280)
T ss_pred CeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCCCeE
Confidence 99999999999999988753210 1123999999999999999
Q ss_pred EEecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhh
Q 042735 537 HVSDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMR 607 (667)
Q Consensus 537 kl~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~ 607 (667)
||+|||+++....... ......+++.|+||| ++.++|||||||++|||++ |+.||..... ......
T Consensus 162 kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~----~~~~~~- 236 (280)
T cd05049 162 KIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSN----EEVIEC- 236 (280)
T ss_pred EECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCH----HHHHHH-
Confidence 9999999986432221 122345678899999 4678999999999999999 9999753221 111111
Q ss_pred hccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 608 LDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
+.....+..... ....+.+++.+||+.+|++|||++||++.+.
T Consensus 237 ---~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~ 279 (280)
T cd05049 237 ---ITQGRLLQRPRT---CPSEVYDIMLGCWKRDPQQRINIKDIHERLQ 279 (280)
T ss_pred ---HHcCCcCCCCCC---CCHHHHHHHHHHcCCCcccCCCHHHHHHHhh
Confidence 111111111111 1235678889999999999999999998874
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt |
| >cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-32 Score=281.06 Aligned_cols=221 Identities=23% Similarity=0.338 Sum_probs=160.8
Q ss_pred ceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHH-HHHhcCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 427 YCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIE-ALTKIRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~-~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
+.||+|+||.||+|+.. ++..+|+|.+...... .......+.+|.. +++.++|||||++++++.+.+..++||||++
T Consensus 1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~ 79 (321)
T cd05603 1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTIL-KKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVN 79 (321)
T ss_pred CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHH-HhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCC
Confidence 36899999999999874 5788999987542211 1122345666665 5788999999999999999999999999999
Q ss_pred CCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccccccc
Q 042735 505 RGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560 (667)
Q Consensus 505 ~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt 560 (667)
+|+|...+.... ...|.||||+||+++.++.+||+|||+++............+||
T Consensus 80 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt 159 (321)
T cd05603 80 GGELFFHLQRERCFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGT 159 (321)
T ss_pred CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCccccccCC
Confidence 999987764321 11234999999999999999999999998643333334456899
Q ss_pred ccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHH
Q 042735 561 YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634 (667)
Q Consensus 561 ~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (667)
+.|+||| |+.++|||||||++|||+||+.||..... .... ..+.......+.. ....+.+++
T Consensus 160 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~----~~~~----~~i~~~~~~~~~~----~~~~~~~li 227 (321)
T cd05603 160 PEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDV----SQMY----DNILHKPLQLPGG----KTVAACDLL 227 (321)
T ss_pred cccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCH----HHHH----HHHhcCCCCCCCC----CCHHHHHHH
Confidence 9999999 56789999999999999999999853221 0111 1111111111111 122466788
Q ss_pred HhccccCCCCCCCH----HHHHHHHHHhhh
Q 042735 635 FSCLDVSPESRPTM----QTITQQLLFSLV 660 (667)
Q Consensus 635 ~~Cl~~~p~~RPt~----~ev~~~l~~~~~ 660 (667)
.+|++.+|++||++ .|+.++.++...
T Consensus 228 ~~~l~~~p~~R~~~~~~~~~~~~~~~~~~~ 257 (321)
T cd05603 228 VGLLHKDQRRRLGAKADFLEIKNHVFFSPI 257 (321)
T ss_pred HHHccCCHhhcCCCCCCHHHHhCCCCcCCC
Confidence 89999999999875 588887777543
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. |
| >cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=269.01 Aligned_cols=224 Identities=24% Similarity=0.377 Sum_probs=165.6
Q ss_pred HHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeC---
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHA--- 493 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~--- 493 (667)
+.+.|+..+.||+|+||.||+|... +++.+|+|.+.... .....+.+|+.++.++ +||||++++|++...
T Consensus 4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-----~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~ 78 (272)
T cd06637 4 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-----DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP 78 (272)
T ss_pred hhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC-----ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCC
Confidence 4566778889999999999999864 57789999875431 1234688999999998 699999999998753
Q ss_pred ---CceEEEEEecCCCChHHHhcccc---C-----------------------CcccccccCCeeecCCCceEEeccccc
Q 042735 494 ---RHSILIYEYLKRGSLATNLSNDA---A-----------------------AEELDISSKNVLLDLEHKAHVSDFGIA 544 (667)
Q Consensus 494 ---~~~~lv~ey~~~g~L~~~l~~~~---~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla 544 (667)
...++||||+++|+|.+.+.... . ..|.|+||+||+++.++.+||+|||++
T Consensus 79 ~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~ 158 (272)
T cd06637 79 GMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVS 158 (272)
T ss_pred CCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCc
Confidence 45789999999999998776421 0 012399999999999999999999999
Q ss_pred ccccCCCCCcccccccccccCCCC-----------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccC
Q 042735 545 KFLKPDSSNWSALVGTYRYVAPDY-----------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD 613 (667)
Q Consensus 545 ~~~~~~~~~~~~~~Gt~~y~aPE~-----------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~ 613 (667)
+.............|++.|+|||+ +.++|||||||++|||++|+.|+...... ...........
T Consensus 159 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~-----~~~~~~~~~~~ 233 (272)
T cd06637 159 AQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPM-----RALFLIPRNPA 233 (272)
T ss_pred eecccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHH-----HHHHHHhcCCC
Confidence 876543333455679999999993 34799999999999999999997532211 00000001001
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 614 PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..... .. ....+.+++.+||..+|.+|||+.|++++.|+
T Consensus 234 ~~~~~--~~---~~~~~~~li~~~l~~~p~~Rpt~~~il~~~~~ 272 (272)
T cd06637 234 PRLKS--KK---WSKKFQSFIESCLVKNHSQRPTTEQLMKHPFI 272 (272)
T ss_pred CCCCC--CC---cCHHHHHHHHHHcCCChhhCCCHHHHhhCCCC
Confidence 11111 11 11246688889999999999999999998764
|
Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ |
| >KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-32 Score=251.45 Aligned_cols=223 Identities=22% Similarity=0.377 Sum_probs=164.5
Q ss_pred cCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceEEEEE
Q 042735 424 DAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 424 ~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~lv~e 501 (667)
+....+|.|..|.|+++++++ |...|||.+.... ..++.+++...++++.+-. .|.||+.+|||......++.||
T Consensus 95 ~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~---Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMe 171 (391)
T KOG0983|consen 95 ENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTG---NKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICME 171 (391)
T ss_pred hhHHhhcCCCccceEEEEEcccceEEEEEeecccC---CHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHH
Confidence 445668999999999998765 7889999886532 2344567888888877655 8999999999999999999999
Q ss_pred ecCC----------CCh---------------HHHhccccCCcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 502 YLKR----------GSL---------------ATNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 502 y~~~----------g~L---------------~~~l~~~~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
.|.. +.. .++|.+.....|.|+||+|||+|+.|++|+||||++..+.+.. ..+.
T Consensus 172 lMs~C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSk-Ahtr 250 (391)
T KOG0983|consen 172 LMSTCAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSK-AHTR 250 (391)
T ss_pred HHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeecccccceeeccc-cccc
Confidence 8742 111 0122233344567999999999999999999999998776443 3455
Q ss_pred ccccccccCCC---------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 557 LVGTYRYVAPD---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 557 ~~Gt~~y~aPE---------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
..|-+.||||| |+-++|||||||.++||+||+.||...... ..+ +..+++ ..|+..+...+..
T Consensus 251 sAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~td---Fe~----ltkvln-~ePP~L~~~~gFS 322 (391)
T KOG0983|consen 251 SAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTD---FEV----LTKVLN-EEPPLLPGHMGFS 322 (391)
T ss_pred ccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCcc---HHH----HHHHHh-cCCCCCCcccCcC
Confidence 78999999999 778899999999999999999998642211 111 122222 1122222222234
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
..+.+++..|+.+|+.+||.-.+++++.+..
T Consensus 323 p~F~~fv~~CL~kd~r~RP~Y~~Ll~h~Fi~ 353 (391)
T KOG0983|consen 323 PDFQSFVKDCLTKDHRKRPKYNKLLEHPFIK 353 (391)
T ss_pred HHHHHHHHHHhhcCcccCcchHHHhcCccee
Confidence 4677888899999999999999999987653
|
|
| >cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=261.72 Aligned_cols=227 Identities=23% Similarity=0.355 Sum_probs=168.6
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCc-hHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSD-QIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
++|+..+.||+|++|.||+|.. .++..+|+|.+....... .....+.+.+|++++++++||||++++|++.+.+..++
T Consensus 2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~ 81 (263)
T cd06625 2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI 81 (263)
T ss_pred CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence 4688899999999999999975 467889999876432211 12234568899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC-
Q 042735 499 IYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN- 553 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~- 553 (667)
||||+++++|.+.+..... ..|.||||+||++++++.+||+|||+++........
T Consensus 82 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~ 161 (263)
T cd06625 82 FMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSG 161 (263)
T ss_pred EEEECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecccccccc
Confidence 9999999999887653211 123499999999999999999999999865432211
Q ss_pred --cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 554 --WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 554 --~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
.....|+..|+||| ++.++|||||||++|||++|+.||...... ............+..+..
T Consensus 162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~------ 231 (263)
T cd06625 162 TGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAM----AAIFKIATQPTNPQLPSH------ 231 (263)
T ss_pred ccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccchH----HHHHHHhccCCCCCCCcc------
Confidence 13456889999999 467899999999999999999997532211 000000001011111211
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
....+.+++.+||..+|++|||+.|++++.||
T Consensus 232 ~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~ 263 (263)
T cd06625 232 VSPDARNFLRRTFVENAKKRPSAEELLRHFFV 263 (263)
T ss_pred CCHHHHHHHHHHhhcCcccCCCHHHHhhCCCC
Confidence 11245678889999999999999999998764
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t |
| >cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=261.42 Aligned_cols=219 Identities=25% Similarity=0.436 Sum_probs=164.0
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
.+|...+.||+|+||.||+|+..++..+|||.+..... ....|.+|+.++.+++||||++++|++.+.+..++||
T Consensus 4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 78 (256)
T cd05113 4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-----SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVT 78 (256)
T ss_pred HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcc-----cHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEE
Confidence 45777889999999999999887777799998764321 2356899999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC-c
Q 042735 501 EYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN-W 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~-~ 554 (667)
||+++|+|.+.+..... ..|.||||+||+++.++.+||+|||.++........ .
T Consensus 79 e~~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~ 158 (256)
T cd05113 79 EYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSS 158 (256)
T ss_pred EcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccceecCCCceeec
Confidence 99999999988754211 112399999999999999999999999865432211 1
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
....++..|+||| ++.++|||||||++|||+| |+.||..... ...... ......+..+.. ..
T Consensus 159 ~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~----~~~~~~-~~~~~~~~~~~~------~~ 227 (256)
T cd05113 159 VGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNN----SETVEK-VSQGLRLYRPHL------AS 227 (256)
T ss_pred CCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCH----HHHHHH-HhcCCCCCCCCC------CC
Confidence 1223567899999 4678999999999999999 9999753221 111111 111111111111 12
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHH
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l 655 (667)
..+.+++.+||+.+|++|||+.+|++.+
T Consensus 228 ~~~~~li~~cl~~~p~~Rp~~~~ll~~~ 255 (256)
T cd05113 228 EKVYAIMYSCWHEKAEERPTFQQLLSSI 255 (256)
T ss_pred HHHHHHHHHHcCCCcccCCCHHHHHHhh
Confidence 3567888899999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds |
| >cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=274.26 Aligned_cols=223 Identities=22% Similarity=0.331 Sum_probs=164.2
Q ss_pred ceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 427 YCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
+.||+|+||.||+|+.. ++..+|+|.+....... ....+.+..|+.++... +||||+++++++.+.+..++||||++
T Consensus 1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~-~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~ 79 (316)
T cd05620 1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLI-DDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLN 79 (316)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh-cchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCC
Confidence 36899999999999875 57889999886432111 12234567788888754 89999999999999999999999999
Q ss_pred CCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccccccc
Q 042735 505 RGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560 (667)
Q Consensus 505 ~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt 560 (667)
+|+|...+..... ..|.||||+||+++.++.+||+|||+++............+||
T Consensus 80 ~g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt 159 (316)
T cd05620 80 GGDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGT 159 (316)
T ss_pred CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCCeecccCCCceeccCCC
Confidence 9999877654211 1234999999999999999999999998543333334567899
Q ss_pred ccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHH
Q 042735 561 YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634 (667)
Q Consensus 561 ~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (667)
+.|+||| |+.++|||||||++|||++|+.||..... ..... .. ....+..+... ..++.+++
T Consensus 160 ~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~----~~~~~-~~-~~~~~~~~~~~------~~~~~~li 227 (316)
T cd05620 160 PDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDE----DELFE-SI-RVDTPHYPRWI------TKESKDIL 227 (316)
T ss_pred cCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH----HHHHH-HH-HhCCCCCCCCC------CHHHHHHH
Confidence 9999999 56789999999999999999999853221 11111 00 01112222211 12456788
Q ss_pred HhccccCCCCCCCH-HHHHHHHHHhhhhh
Q 042735 635 FSCLDVSPESRPTM-QTITQQLLFSLVYF 662 (667)
Q Consensus 635 ~~Cl~~~p~~RPt~-~ev~~~l~~~~~~~ 662 (667)
.+||+.||++||++ +++.++.||....+
T Consensus 228 ~~~l~~dP~~R~~~~~~~~~h~~f~~~~~ 256 (316)
T cd05620 228 EKLFERDPTRRLGVVGNIRGHPFFKTINW 256 (316)
T ss_pred HHHccCCHHHcCCChHHHHcCCCcCCCCH
Confidence 89999999999998 57888888866543
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I |
| >cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6 | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=269.47 Aligned_cols=232 Identities=19% Similarity=0.334 Sum_probs=159.0
Q ss_pred CCcCcceeecccCeEEEEEEe-C-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc---CCCCeeEEEEEEEe----
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-P-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI---RHRNIVKFYGFCSH---- 492 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l---~H~niv~~~g~~~~---- 492 (667)
+|+..+.||+|+||.||+|+. . ++..+|||++....... .....+.+|+++++++ +||||++++++|..
T Consensus 2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~ 79 (290)
T cd07862 2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE--GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD 79 (290)
T ss_pred CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCC--CchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCC
Confidence 577888999999999999976 3 46789999876433221 1223466777777665 69999999999852
Q ss_pred -CCceEEEEEecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccc
Q 042735 493 -ARHSILIYEYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAK 545 (667)
Q Consensus 493 -~~~~~lv~ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~ 545 (667)
....++||||++ |+|.+++.... ...|.||||+|||++.++.+||+|||+++
T Consensus 80 ~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~ 158 (290)
T cd07862 80 RETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR 158 (290)
T ss_pred CCCcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccceE
Confidence 456899999997 57877664311 11244999999999999999999999998
Q ss_pred cccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh-----------h-
Q 042735 546 FLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM-----------R- 607 (667)
Q Consensus 546 ~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~-----------~- 607 (667)
..... .......||+.|+||| |+.++|||||||++|||+||++||...........+.+. .
T Consensus 159 ~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 237 (290)
T cd07862 159 IYSFQ-MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDV 237 (290)
T ss_pred eccCC-cccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhchhhh
Confidence 75433 2234567999999999 577899999999999999999998633211000000000 0
Q ss_pred --hccccCCCCCCCCCch-HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 608 --LDEMLDPRLPPPSPDV-QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 608 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
....+.+..+.+.... ......+.+++.+|++.+|++|||+.|++++.||
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~hp~f 290 (290)
T cd07862 238 ALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYF 290 (290)
T ss_pred cccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhcCCCC
Confidence 0000000000000000 0011245678899999999999999999988764
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla |
| >cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=284.52 Aligned_cols=232 Identities=22% Similarity=0.270 Sum_probs=166.1
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|+. .+++.+|||++..... ......+.+.+|++++++++|||||++++++.+.+..|+|
T Consensus 1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv 79 (377)
T cd05629 1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEM-FKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLI 79 (377)
T ss_pred CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHH-HHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEE
Confidence 3688889999999999999975 5678899998754211 1122345688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC---
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS--- 552 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~--- 552 (667)
|||+++|+|.+++.... ...|.||||+|||++.++.+||+|||+++.......
T Consensus 80 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~ 159 (377)
T cd05629 80 MEFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAY 159 (377)
T ss_pred EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeeccccccccccccccc
Confidence 99999999988775321 112349999999999999999999999963211000
Q ss_pred --------------------------------------------CcccccccccccCCC------CCCCchHHHHHHHHH
Q 042735 553 --------------------------------------------NWSALVGTYRYVAPD------YRKKCDVYSFRVLAL 582 (667)
Q Consensus 553 --------------------------------------------~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ 582 (667)
.....+||+.|+||| |+.++|||||||++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ 239 (377)
T cd05629 160 YQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMF 239 (377)
T ss_pred ccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhh
Confidence 001257999999999 578999999999999
Q ss_pred HHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCC---CCCHHHHHHHHHHhh
Q 042735 583 EVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPES---RPTMQTITQQLLFSL 659 (667)
Q Consensus 583 ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~---RPt~~ev~~~l~~~~ 659 (667)
||+||+.||...... ...............+... .....+.+++.+|+. +|.+ ||++.|++++.|+..
T Consensus 240 elltG~~Pf~~~~~~----~~~~~i~~~~~~~~~p~~~----~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~hp~~~~ 310 (377)
T cd05629 240 ECLIGWPPFCSENSH----ETYRKIINWRETLYFPDDI----HLSVEAEDLIRRLIT-NAENRLGRGGAHEIKSHPFFRG 310 (377)
T ss_pred hhhcCCCCCCCCCHH----HHHHHHHccCCccCCCCCC----CCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhcCCCcCC
Confidence 999999998532210 0000000000011111110 111245677778887 6665 569999999999875
Q ss_pred hhh
Q 042735 660 VYF 662 (667)
Q Consensus 660 ~~~ 662 (667)
..+
T Consensus 311 ~~~ 313 (377)
T cd05629 311 VDW 313 (377)
T ss_pred CCH
Confidence 543
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of |
| >cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-31 Score=263.11 Aligned_cols=222 Identities=27% Similarity=0.441 Sum_probs=169.1
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|.... +..+++|.+... ...+++.+|++++++++||||++++|++.+....+++
T Consensus 3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~------~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~ 76 (256)
T cd06612 3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVE------EDLQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIV 76 (256)
T ss_pred ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecH------HHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEE
Confidence 568888899999999999998765 788999987542 1156799999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
+||+++++|.+.+..... ..|.|++|+||+++.++.+||+|||++..........
T Consensus 77 ~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~ 156 (256)
T cd06612 77 MEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKR 156 (256)
T ss_pred EecCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchhcccCcccc
Confidence 999999999988753211 1234999999999999999999999998765443333
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
....|+..|+||| ++.++|||||||++|||+||+.|+....... ... ..................
T Consensus 157 ~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~ 227 (256)
T cd06612 157 NTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMR---AIF------MIPNKPPPTLSDPEKWSP 227 (256)
T ss_pred ccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhh---hhh------hhccCCCCCCCchhhcCH
Confidence 4456899999999 4678999999999999999999976322110 000 000001111111111123
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.+.+++.+||+.+|++|||+.||+++.|+
T Consensus 228 ~~~~~i~~~l~~~P~~Rps~~~il~~~~~ 256 (256)
T cd06612 228 EFNDFVKKCLVKDPEERPSAIQLLQHPFI 256 (256)
T ss_pred HHHHHHHHHHhcChhhCcCHHHHhcCCCC
Confidence 46778889999999999999999987664
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a |
| >KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=260.14 Aligned_cols=230 Identities=21% Similarity=0.293 Sum_probs=175.4
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||.|.-|+||.++.++ +..+|+|++.+..... .....+...|-+||+.++||.++.+|+.+...+..++|
T Consensus 77 ~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~-rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~ 155 (459)
T KOG0610|consen 77 RHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLAS-RKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLV 155 (459)
T ss_pred HHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhh-hhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEE
Confidence 456677889999999999999866 5889999987643211 22234577899999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC------------C--------------cccccccCCeeecCCCceEEecccccccccC----
Q 042735 500 YEYLKRGSLATNLSNDAA------------A--------------EELDISSKNVLLDLEHKAHVSDFGIAKFLKP---- 549 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~------------~--------------~~~dlk~~NiLld~~~~~kl~DFGla~~~~~---- 549 (667)
||||+||+|...++.+.. + ...||||+||||.++|++.|+||-++.....
T Consensus 156 meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~ 235 (459)
T KOG0610|consen 156 MEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTL 235 (459)
T ss_pred EecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeeccccccCCCCCee
Confidence 999999999988765421 0 1129999999999999999999988743210
Q ss_pred -----------------------------C-C----------------------CCcccccccccccCCC------CCCC
Q 042735 550 -----------------------------D-S----------------------SNWSALVGTYRYVAPD------YRKK 571 (667)
Q Consensus 550 -----------------------------~-~----------------------~~~~~~~Gt~~y~aPE------~~~~ 571 (667)
. . .....++||..|+||| .+.+
T Consensus 236 ~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsA 315 (459)
T KOG0610|consen 236 VKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSA 315 (459)
T ss_pred eccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCCch
Confidence 0 0 0012468999999999 3668
Q ss_pred chHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccC--CCCCCCCCchHHHHHHHHHHHHhccccCCCCCCC--
Q 042735 572 CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD--PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPT-- 647 (667)
Q Consensus 572 ~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt-- 647 (667)
+|+|+|||++|||+.|+.||...... ..+..++. ...|.. ........+++.+-|.+||.+|--
T Consensus 316 VDWWtfGIflYEmLyG~TPFKG~~~~--------~Tl~NIv~~~l~Fp~~----~~vs~~akDLIr~LLvKdP~kRlg~~ 383 (459)
T KOG0610|consen 316 VDWWTFGIFLYEMLYGTTPFKGSNNK--------ETLRNIVGQPLKFPEE----PEVSSAAKDLIRKLLVKDPSKRLGSK 383 (459)
T ss_pred hhHHHHHHHHHHHHhCCCCcCCCCch--------hhHHHHhcCCCcCCCC----CcchhHHHHHHHHHhccChhhhhccc
Confidence 99999999999999999998643321 11122222 222222 133446678888999999999998
Q ss_pred --HHHHHHHHHHhhhhhc
Q 042735 648 --MQTITQQLLFSLVYFS 663 (667)
Q Consensus 648 --~~ev~~~l~~~~~~~~ 663 (667)
++||.+|.+|.++.|.
T Consensus 384 rGA~eIK~HpFF~gVnWa 401 (459)
T KOG0610|consen 384 RGAAEIKRHPFFEGVNWA 401 (459)
T ss_pred cchHHhhcCccccCCChh
Confidence 9999999999999875
|
|
| >cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=281.49 Aligned_cols=235 Identities=20% Similarity=0.292 Sum_probs=170.5
Q ss_pred HHHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 418 RAINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 418 ~~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
...++|+..+.||+|+||.||+|+.. +++.+|+|.+..... ......+.+.+|+.+++.++||||+++++++.+++..
T Consensus 40 ~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~-~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~ 118 (371)
T cd05622 40 MKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEM-IKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYL 118 (371)
T ss_pred cchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHh-hhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEE
Confidence 34578999999999999999999875 577899998753211 1112334578999999999999999999999999999
Q ss_pred EEEEEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCC-
Q 042735 497 ILIYEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS- 552 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~- 552 (667)
++||||+++|+|.+.+..... ..|.||||+|||++.++.+||+|||+++.......
T Consensus 119 ~lv~Ey~~gg~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~ 198 (371)
T cd05622 119 YMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMV 198 (371)
T ss_pred EEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCcc
Confidence 999999999999887754321 12349999999999999999999999987643221
Q ss_pred CcccccccccccCCC----------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCc
Q 042735 553 NWSALVGTYRYVAPD----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE----------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (667)
.....+||+.||||| |+.++|||||||++|||++|+.||...... ..........-....+.. .
T Consensus 199 ~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~----~~~~~i~~~~~~~~~~~~-~- 272 (371)
T cd05622 199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV----GTYSKIMNHKNSLTFPDD-N- 272 (371)
T ss_pred cccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCHH----HHHHHHHcCCCcccCCCc-C-
Confidence 223567999999999 456899999999999999999998632211 011111000001111111 1
Q ss_pred hHHHHHHHHHHHHhccccCCCC--CCCHHHHHHHHHHhhhh
Q 042735 623 VQGKLISIMEVAFSCLDVSPES--RPTMQTITQQLLFSLVY 661 (667)
Q Consensus 623 ~~~~~~~~~~~~~~Cl~~~p~~--RPt~~ev~~~l~~~~~~ 661 (667)
.....+.+++..|+...+.+ ||+++|++++.|+....
T Consensus 273 --~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~~~~~~~ 311 (371)
T cd05622 273 --DISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQ 311 (371)
T ss_pred --CCCHHHHHHHHHHcCChhhhcCCCCHHHHhcCcccCCCC
Confidence 11224556777899844433 78999999999987644
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an |
| >cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=262.74 Aligned_cols=223 Identities=25% Similarity=0.459 Sum_probs=169.7
Q ss_pred HcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
..+|+..+.||+|+||.||+|...++..+|+|.+.... ......+.+|+.++++++||||+++++++.+.+..++|
T Consensus 5 ~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv 80 (261)
T cd05148 5 REEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDD----LLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYII 80 (261)
T ss_pred HHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccc----hhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEE
Confidence 45688889999999999999998888899999876432 22345688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 500 YEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
|||+++|+|.+.+..... ..|.||||+||+++.++.+||+|||++.........
T Consensus 81 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~ 160 (261)
T cd05148 81 TELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYL 160 (261)
T ss_pred EeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEcCCceEEEccccchhhcCCcccc
Confidence 999999999988764211 112399999999999999999999999876543322
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....++..|+||| ++.++|||||||++|||++ |+.||..... ....... .....+..+. ..
T Consensus 161 ~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~----~~~~~~~-~~~~~~~~~~------~~ 229 (261)
T cd05148 161 SSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNN----HEVYDQI-TAGYRMPCPA------KC 229 (261)
T ss_pred ccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCH----HHHHHHH-HhCCcCCCCC------CC
Confidence 23345677899999 4568999999999999998 8888753221 1111111 1111111111 11
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
...+.+++.+||+.+|++|||++++.+.|..
T Consensus 230 ~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~ 260 (261)
T cd05148 230 PQEIYKIMLECWAAEPEDRPSFKALREELDN 260 (261)
T ss_pred CHHHHHHHHHHcCCCchhCcCHHHHHHHHhc
Confidence 2346688899999999999999999998864
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom |
| >cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=263.57 Aligned_cols=226 Identities=26% Similarity=0.412 Sum_probs=172.4
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||.|+||.||+|... ++..+|+|.+..... ......+.+|++++++++||||+++++++.++...++|+
T Consensus 2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 78 (274)
T cd06609 2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEA---EDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIM 78 (274)
T ss_pred hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeecccc---chHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEE
Confidence 5677788999999999999864 578899998764321 223456889999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcccc
Q 042735 501 EYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL 557 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~ 557 (667)
||+++|+|.+++..... ..|.|++|+||+++.++.++|+|||+++............
T Consensus 79 e~~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~ 158 (274)
T cd06609 79 EYCGGGSCLDLLKPGKLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTF 158 (274)
T ss_pred EeeCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEcccccceeecccccccccc
Confidence 99999999888764321 1234999999999999999999999998776543333456
Q ss_pred cccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHH
Q 042735 558 VGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIM 631 (667)
Q Consensus 558 ~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (667)
.|++.|+||| ++.++|||||||++|||+||+.|+...... ... ........+..+.. .....+.
T Consensus 159 ~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~----~~~-~~~~~~~~~~~~~~-----~~~~~~~ 228 (274)
T cd06609 159 VGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPM----RVL-FLIPKNNPPSLEGN-----KFSKPFK 228 (274)
T ss_pred cCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchH----HHH-HHhhhcCCCCCccc-----ccCHHHH
Confidence 7899999999 367899999999999999999998532210 000 01111111111111 0122466
Q ss_pred HHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 632 EVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 632 ~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
+++.+||..+|++|||+++++++.|+...
T Consensus 229 ~~l~~~l~~~p~~Rpt~~~il~~~~~~~~ 257 (274)
T cd06609 229 DFVSLCLNKDPKERPSAKELLKHKFIKKA 257 (274)
T ss_pred HHHHHHhhCChhhCcCHHHHhhChhhcCC
Confidence 78889999999999999999999888643
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) |
| >cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=262.70 Aligned_cols=227 Identities=24% Similarity=0.348 Sum_probs=172.9
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
.|+..+.||+|+||.||+|... ++..+|+|.+..... ......+.+|+.++++++||||+++++++.+....++||
T Consensus 5 ~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 81 (277)
T cd06640 5 LFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEA---EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIM 81 (277)
T ss_pred hhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEecccc---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence 4566778999999999999864 578899998764321 233467899999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcccc
Q 042735 501 EYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL 557 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~ 557 (667)
||+++|+|.+++..... ..|.||+|+||+++.++.++++|||++.............
T Consensus 82 e~~~~~~L~~~i~~~~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~ 161 (277)
T cd06640 82 EYLGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTF 161 (277)
T ss_pred ecCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEcccccceeccCCccccccc
Confidence 99999999887754321 1234999999999999999999999998765433333445
Q ss_pred cccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHH
Q 042735 558 VGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIM 631 (667)
Q Consensus 558 ~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (667)
.|+..|+|||+ +.++|||||||++|||+||+.|+...... .. ........++... ......+.
T Consensus 162 ~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~-----~~----~~~~~~~~~~~~~--~~~~~~~~ 230 (277)
T cd06640 162 VGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPM-----RV----LFLIPKNNPPTLT--GEFSKPFK 230 (277)
T ss_pred cCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChH-----hH----hhhhhcCCCCCCc--hhhhHHHH
Confidence 78899999994 56899999999999999999997532211 00 0011111111111 12334677
Q ss_pred HHHHhccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 632 EVAFSCLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 632 ~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
+++.+||+.+|++||++++++++.++....+
T Consensus 231 ~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~ 261 (277)
T cd06640 231 EFIDACLNKDPSFRPTAKELLKHKFIVKNAK 261 (277)
T ss_pred HHHHHHcccCcccCcCHHHHHhChHhhhcch
Confidence 8899999999999999999999998876554
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter |
| >cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=268.69 Aligned_cols=226 Identities=25% Similarity=0.422 Sum_probs=170.9
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
.+|+..+.||.|+||.||+|.. .+++.+|+|.+..... ...+.+.+|++++++++||||+++++++...+..++|
T Consensus 19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 94 (296)
T cd06655 19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQ----PKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVV 94 (296)
T ss_pred ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccC----chHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEE
Confidence 3578888999999999999975 5688999998754321 2245688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 500 YEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
+||+++|+|...+..... ..|.||||+||+++.++.+||+|||+++...........
T Consensus 95 ~e~~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~ 174 (296)
T cd06655 95 MEYLAGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRST 174 (296)
T ss_pred EEecCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccchhcccccccCCC
Confidence 999999999887654321 123499999999999999999999999876544333344
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
..|++.|+||| ++.++|||||||++|||+||+.||....... ... .......+.+..+ .. ....+
T Consensus 175 ~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~---~~~--~~~~~~~~~~~~~-~~---~~~~~ 245 (296)
T cd06655 175 MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR---ALY--LIATNGTPELQNP-EK---LSPIF 245 (296)
T ss_pred cCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HHH--HHHhcCCcccCCc-cc---CCHHH
Confidence 57899999999 3568999999999999999999985432110 000 0000001111111 11 11246
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.+++.+||..+|++|||+.+|+.+.|+..
T Consensus 246 ~~li~~~l~~dp~~Rpt~~~il~~~~~~~ 274 (296)
T cd06655 246 RDFLNRCLEMDVEKRGSAKELLQHPFLKL 274 (296)
T ss_pred HHHHHHHhhcChhhCCCHHHHhhChHhhh
Confidence 67888999999999999999999998864
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=261.74 Aligned_cols=227 Identities=23% Similarity=0.382 Sum_probs=168.0
Q ss_pred CCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCc--hHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSD--QIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
+|...+.||+|+||.||+|...++..+|||.+....... .......+.+|++++++++|+||+++++++.+.+..++|
T Consensus 1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv 80 (265)
T cd06631 1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIF 80 (265)
T ss_pred CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEE
Confidence 366778999999999999988888899999876432211 122335688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCC-----
Q 042735 500 YEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD----- 550 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~----- 550 (667)
|||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++.....
T Consensus 81 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~ 160 (265)
T cd06631 81 MEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGT 160 (265)
T ss_pred EecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhHhhhhcccccc
Confidence 999999999988754211 113399999999999999999999999865321
Q ss_pred -CCCcccccccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 551 -SSNWSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 551 -~~~~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
........|+..|+|||+ +.++|||||||++|||+||+.||....... ............+..+...
T Consensus 161 ~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~--- 234 (265)
T cd06631 161 HSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLA---AMFYIGAHRGLMPRLPDSF--- 234 (265)
T ss_pred ccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChHH---HHHHhhhccCCCCCCCCCC---
Confidence 111234568999999993 578999999999999999999985322110 0000000000111122111
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
...+.+++.+||+.+|++||++.|++++.|+
T Consensus 235 ---~~~~~~~i~~~l~~~p~~Rp~~~~~l~~~~~ 265 (265)
T cd06631 235 ---SAAAIDFVTSCLTRDQHERPSALQLLRHDFL 265 (265)
T ss_pred ---CHHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence 2245678889999999999999999987653
|
Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. |
| >cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=265.68 Aligned_cols=225 Identities=21% Similarity=0.285 Sum_probs=162.3
Q ss_pred eecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCCCC
Q 042735 429 IGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGS 507 (667)
Q Consensus 429 lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~g~ 507 (667)
||+|+||.||+++. .+++.+|+|++....... ....+.+..|++++++++||||+++++++..+...++||||+++|+
T Consensus 1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~-~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~ 79 (277)
T cd05607 1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKK-KSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGD 79 (277)
T ss_pred CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhc-chhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCC
Confidence 69999999999976 458899999885422111 1123456679999999999999999999999999999999999999
Q ss_pred hHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcccccccc
Q 042735 508 LATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561 (667)
Q Consensus 508 L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~ 561 (667)
|.+.+.... ...|.||||+||+++.++.+||+|||++....... ......||+
T Consensus 80 L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~-~~~~~~~~~ 158 (277)
T cd05607 80 LKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGK-TITQRAGTN 158 (277)
T ss_pred HHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCc-eeeccCCCC
Confidence 987663211 11133999999999999999999999998654322 223457899
Q ss_pred cccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHH
Q 042735 562 RYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF 635 (667)
Q Consensus 562 ~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (667)
.|+||| ++.++||||+||++|||++|+.||............ ............... ...++.+++.
T Consensus 159 ~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~li~ 231 (277)
T cd05607 159 GYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEEL----KRRTLEDEVKFEHQN---FTEESKDICR 231 (277)
T ss_pred CccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHH----HHHhhcccccccccc---CCHHHHHHHH
Confidence 999999 467899999999999999999998532211000011 111111111111111 1224678888
Q ss_pred hccccCCCCCCCH----HHHHHHHHHhhhhh
Q 042735 636 SCLDVSPESRPTM----QTITQQLLFSLVYF 662 (667)
Q Consensus 636 ~Cl~~~p~~RPt~----~ev~~~l~~~~~~~ 662 (667)
+||+.+|++||++ ++++.+.||....|
T Consensus 232 ~~L~~~P~~R~~~~~~~~~~~~h~~f~~~~~ 262 (277)
T cd05607 232 LFLAKKPEDRLGSREKNDDPRKHEFFKTINF 262 (277)
T ss_pred HHhccCHhhCCCCccchhhhhcChhhcCCCH
Confidence 9999999999999 56667777766544
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr |
| >cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=263.58 Aligned_cols=226 Identities=25% Similarity=0.420 Sum_probs=166.9
Q ss_pred cCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
++|...+.||+|+||.||++... ++..+|+|.+.... ....+.+.+|++++++++||||+++++++...+
T Consensus 5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~ 80 (288)
T cd05093 5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS----DNARKDFHREAELLTNLQHEHIVKFYGVCVEGD 80 (288)
T ss_pred HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcC----HHHHHHHHHHHHHHHhCCCCCcceEEEEEecCC
Confidence 46778889999999999999742 24568888875421 233457999999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhccccC-------------------------------------CcccccccCCeeecCCCceE
Q 042735 495 HSILIYEYLKRGSLATNLSNDAA-------------------------------------AEELDISSKNVLLDLEHKAH 537 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~~-------------------------------------~~~~dlk~~NiLld~~~~~k 537 (667)
..++||||+++|+|.+++..... ..|.||||+||++++++.+|
T Consensus 81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~~~k 160 (288)
T cd05093 81 PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVK 160 (288)
T ss_pred ccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEE
Confidence 99999999999999887753210 11239999999999999999
Q ss_pred EecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhh
Q 042735 538 VSDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRL 608 (667)
Q Consensus 538 l~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~ 608 (667)
|+|||+++....... ......+++.|+||| ++.++|||||||++|||+| |+.||..... ......
T Consensus 161 l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~----~~~~~~-- 234 (288)
T cd05093 161 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN----NEVIEC-- 234 (288)
T ss_pred eccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH----HHHHHH--
Confidence 999999986543221 122344678899999 4668999999999999999 8888753221 111111
Q ss_pred ccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 609 DEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
+.....+..... ...++.+++.+||+.+|.+|||++|+.+.+......
T Consensus 235 --i~~~~~~~~~~~---~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~ 282 (288)
T cd05093 235 --ITQGRVLQRPRT---CPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKA 282 (288)
T ss_pred --HHcCCcCCCCCC---CCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHh
Confidence 111111111111 122577899999999999999999999888776544
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly |
| >cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=280.63 Aligned_cols=232 Identities=24% Similarity=0.286 Sum_probs=170.7
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|+. .+++.+|+|++...... .....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv 79 (330)
T cd05601 1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLL-AQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLV 79 (330)
T ss_pred CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhh-hhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEE
Confidence 3688889999999999999976 46788999988643211 112345688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC-
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN- 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~- 553 (667)
|||+++|+|.+.+.... ...|.||||+||+++.++.+||+|||+++........
T Consensus 80 ~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~ 159 (330)
T cd05601 80 MEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVN 159 (330)
T ss_pred ECCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCCCeECCCCCcee
Confidence 99999999998875431 1123499999999999999999999999876543221
Q ss_pred cccccccccccCCCC------------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 554 WSALVGTYRYVAPDY------------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE~------------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
.....||+.|+|||+ +.++|||||||++|||+||+.||....... ..............+.. +
T Consensus 160 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~----~~~~i~~~~~~~~~~~~-~ 234 (330)
T cd05601 160 SKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAK----TYNNIMNFQRFLKFPED-P 234 (330)
T ss_pred eecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHH----HHHHHHcCCCccCCCCC-C
Confidence 233579999999993 357999999999999999999986332110 00000000000111111 1
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
. ....+.+++..|+. +|++|||+++++++.|+....+
T Consensus 235 ~---~~~~~~~li~~ll~-~p~~R~t~~~l~~h~~~~~~~~ 271 (330)
T cd05601 235 K---VSSDFLDLIQSLLC-GQKERLGYEGLCCHPFFSKIDW 271 (330)
T ss_pred C---CCHHHHHHHHHHcc-ChhhCCCHHHHhCCCCcCCCCH
Confidence 1 11245667778997 9999999999999999876443
|
Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor |
| >cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=259.73 Aligned_cols=229 Identities=21% Similarity=0.320 Sum_probs=170.8
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|... ++..+|+|.+...... .....+.+.+|++++++++|+||+++++++.+.+..++|
T Consensus 2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv 80 (267)
T cd08224 2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMM-DAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIV 80 (267)
T ss_pred CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeeccccc-chhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence 57888899999999999999875 7888999987642221 122356789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccc----c------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 500 YEYLKRGSLATNLSND----A------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~----~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
|||+++|+|...+... . ...|.||||+||+++.++.+||+|||+++......
T Consensus 81 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~ 160 (267)
T cd08224 81 LELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT 160 (267)
T ss_pred EecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEeccceeeeccCCC
Confidence 9999999998876421 0 01133999999999999999999999998765433
Q ss_pred CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
.......|++.|+||| ++.++|||||||++|||++|+.|+..... ......+.. .....+..+. + .
T Consensus 161 ~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~-~~~~~~~~~~--~---~ 232 (267)
T cd08224 161 TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM--NLYSLCKKI-EKCDYPPLPA--D---H 232 (267)
T ss_pred cccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCc--cHHHHHhhh-hcCCCCCCCh--h---h
Confidence 3334467899999999 45689999999999999999999742210 000111100 0100111111 0 1
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
....+.+++.+||..+|++|||+.+|++.+...
T Consensus 233 ~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~ 265 (267)
T cd08224 233 YSEELRDLVSRCINPDPEKRPDISYVLQVAKEM 265 (267)
T ss_pred cCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHh
Confidence 223566888899999999999999999988653
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a |
| >cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=265.96 Aligned_cols=224 Identities=26% Similarity=0.401 Sum_probs=168.1
Q ss_pred CcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|+..+.||+|+||.||+|.. .++..+|+|.+..... ....+.+.+|++++++++||||+++++++......++|||
T Consensus 6 y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (277)
T cd06642 6 FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEA---EDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIME 82 (277)
T ss_pred HHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccc---hHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEE
Confidence 44556799999999999975 4577899998764321 2234578999999999999999999999999999999999
Q ss_pred ecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccccc
Q 042735 502 YLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV 558 (667)
Q Consensus 502 y~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~ 558 (667)
|+++|+|.+.+..... ..|.||+|+||+++.++.+|++|||+++.............
T Consensus 83 ~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~ 162 (277)
T cd06642 83 YLGGGSALDLLKPGPLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFV 162 (277)
T ss_pred ccCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccccccccCcchhhhccc
Confidence 9999999887754321 11349999999999999999999999987654333334457
Q ss_pred ccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHH
Q 042735 559 GTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632 (667)
Q Consensus 559 Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (667)
|+..|+||| ++.++|||||||++|||+||+.|+....... .. ........+..+. .....+.+
T Consensus 163 ~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~----~~-~~~~~~~~~~~~~------~~~~~~~~ 231 (277)
T cd06642 163 GTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMR----VL-FLIPKNSPPTLEG------QYSKPFKE 231 (277)
T ss_pred CcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhh----HH-hhhhcCCCCCCCc------ccCHHHHH
Confidence 899999999 3568999999999999999999975221100 00 0000001111111 12235678
Q ss_pred HHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 633 VAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 633 ~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
++.+||+.+|++||+|.+++++.++...
T Consensus 232 li~~~l~~~p~~Rp~~~~il~~~~~~~~ 259 (277)
T cd06642 232 FVEACLNKDPRFRPTAKELLKHKFITRY 259 (277)
T ss_pred HHHHHccCCcccCcCHHHHHHhHHHHHH
Confidence 8889999999999999999999987643
|
Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 |
| >cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=268.11 Aligned_cols=227 Identities=23% Similarity=0.381 Sum_probs=171.5
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
.+|+..+.||+|+||.||+|.. .++..+|+|.+..... ...+.+.+|+.+++.++||||+++++++..++..++|
T Consensus 19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv 94 (297)
T cd06656 19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQ----PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV 94 (297)
T ss_pred hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCcc----chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEe
Confidence 5788889999999999999985 5688999998864322 2335688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-----------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 500 YEYLKRGSLATNLSNDA-----------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-----------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
|||+++|+|.+++.... ...|.||||+||+++.++.+||+|||+++...........
T Consensus 95 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~ 174 (297)
T cd06656 95 MEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST 174 (297)
T ss_pred ecccCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceEccCCccCcCc
Confidence 99999999988765321 1123499999999999999999999999876544333344
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
..|++.|+||| ++.++|||||||++|||+||+.||........... .......+...+. .....+
T Consensus 175 ~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~ 245 (297)
T cd06656 175 MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYL-------IATNGTPELQNPE--RLSAVF 245 (297)
T ss_pred ccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchheee-------eccCCCCCCCCcc--ccCHHH
Confidence 67899999999 35689999999999999999999853221100000 0000000000111 111235
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.+++.+||+.+|++||++++++++.|+...
T Consensus 246 ~~li~~~l~~~p~~Rps~~~il~~~~~~~~ 275 (297)
T cd06656 246 RDFLNRCLEMDVDRRGSAKELLQHPFLKLA 275 (297)
T ss_pred HHHHHHHccCChhhCcCHHHHhcCchhccc
Confidence 678889999999999999999999888643
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=266.60 Aligned_cols=232 Identities=21% Similarity=0.328 Sum_probs=169.9
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|... ++..+|+|.+.... .....+.+.+|++++.+++||||+++++++.+++..++|
T Consensus 1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 77 (308)
T cd06615 1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEI---KPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISIC 77 (308)
T ss_pred CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEecccc---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEE
Confidence 36888899999999999999764 56778888775432 123345688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||+++|+|.+++.... ...|.||||+||+++.++.+||+|||+++..... ..
T Consensus 78 ~ey~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~--~~ 155 (308)
T cd06615 78 MEHMDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS--MA 155 (308)
T ss_pred eeccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCccccccc--cc
Confidence 99999999988874321 1224599999999999999999999999765332 22
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh----------------------
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM---------------------- 606 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~---------------------- 606 (667)
....|++.|+||| ++.++|||||||++|||+||+.|+........ ......
T Consensus 156 ~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (308)
T cd06615 156 NSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKEL-EAMFGRPVSEGEAKESHRPVSGHPPDSP 234 (308)
T ss_pred ccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhH-HHhhcCccccccccCCcccccCCCCCcc
Confidence 4467899999999 45689999999999999999999742110000 000000
Q ss_pred -------hhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 607 -------RLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 607 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..........+ ..+. ......+.+++.+||..+|++|||+.||+++.|+...
T Consensus 235 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~ 293 (308)
T cd06615 235 RPMAIFELLDYIVNEPPP-KLPS-GAFSDEFQDFVDKCLKKNPKERADLKELTKHPFIKRA 293 (308)
T ss_pred chhhHHHHHHHHhcCCCc-cCcC-cccCHHHHHHHHHHccCChhhCcCHHHHhcChhhhhc
Confidence 00000000000 0000 0012246788999999999999999999999998753
|
Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down |
| >cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=279.84 Aligned_cols=221 Identities=22% Similarity=0.321 Sum_probs=159.0
Q ss_pred ceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHH-HHHhcCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 427 YCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIE-ALTKIRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~-~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
+.||+|+||.||+|+.. ++..+|+|.+...... .......+.+|.. +++.++||||+++++++.+.+..++||||++
T Consensus 1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~ 79 (325)
T cd05602 1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAIL-KKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYIN 79 (325)
T ss_pred CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHH-hhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCC
Confidence 36899999999999865 5678999987642111 1122234555554 5678999999999999999999999999999
Q ss_pred CCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccccccc
Q 042735 505 RGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560 (667)
Q Consensus 505 ~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt 560 (667)
+|+|.+.+.... ...|.||||+|||++.++.+||+|||+++............+||
T Consensus 80 ~~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt 159 (325)
T cd05602 80 GGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGT 159 (325)
T ss_pred CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCCCcccccCCCCcccccCC
Confidence 999988775421 11244999999999999999999999998644333334557899
Q ss_pred ccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHH
Q 042735 561 YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634 (667)
Q Consensus 561 ~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (667)
+.||||| |+.++|||||||++|||++|+.||...... ......... ....++.. ...+.+++
T Consensus 160 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~----~~~~~i~~~--~~~~~~~~------~~~~~~li 227 (325)
T cd05602 160 PEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTA----EMYDNILNK--PLQLKPNI------TNSARHLL 227 (325)
T ss_pred ccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHH----HHHHHHHhC--CcCCCCCC------CHHHHHHH
Confidence 9999999 577999999999999999999998532211 111111011 01111111 12356777
Q ss_pred HhccccCCCCCCCHH----HHHHHHHHhhh
Q 042735 635 FSCLDVSPESRPTMQ----TITQQLLFSLV 660 (667)
Q Consensus 635 ~~Cl~~~p~~RPt~~----ev~~~l~~~~~ 660 (667)
.+|++.+|.+||++. ++.++.++...
T Consensus 228 ~~~l~~~p~~R~~~~~~~~~i~~~~~~~~~ 257 (325)
T cd05602 228 EGLLQKDRTKRLGAKDDFMEIKNHIFFSPI 257 (325)
T ss_pred HHHcccCHHHCCCCCCCHHHHhcCcccCCC
Confidence 899999999999865 67777766543
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt |
| >cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=263.90 Aligned_cols=229 Identities=23% Similarity=0.349 Sum_probs=168.5
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|+||.||+|.. .++..+|+|.+..... ....+.|.+|++++++++||||+++++++...+..++||
T Consensus 2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 78 (279)
T cd06619 2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDIT---VELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICT 78 (279)
T ss_pred cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCC---hHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEE
Confidence 567788999999999999975 5678899998754321 233457999999999999999999999999999999999
Q ss_pred EecCCCChHHHhccc--------------------cCCcccccccCCeeecCCCceEEecccccccccCCCCCccccccc
Q 042735 501 EYLKRGSLATNLSND--------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560 (667)
Q Consensus 501 ey~~~g~L~~~l~~~--------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt 560 (667)
||+++|+|....... ....|.||||+||+++.++.+||+|||++...... ......||
T Consensus 79 e~~~~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~--~~~~~~~~ 156 (279)
T cd06619 79 EFMDGGSLDVYRKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNS--IAKTYVGT 156 (279)
T ss_pred ecCCCCChHHhhcCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcceecccc--cccCCCCC
Confidence 999999986432210 11224499999999999999999999999865432 23446899
Q ss_pred ccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh--hhhccccCCCCCCCCCchHHHHHHHHH
Q 042735 561 YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN--MRLDEMLDPRLPPPSPDVQGKLISIME 632 (667)
Q Consensus 561 ~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (667)
..|+||| ++.++|||||||++|||+||+.||.............. ........+..+... ...++.+
T Consensus 157 ~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 231 (279)
T cd06619 157 NAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVGQ-----FSEKFVH 231 (279)
T ss_pred hhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccCCCCCCCCc-----CCHHHHH
Confidence 9999999 45689999999999999999999853221111000000 000001111111111 1124678
Q ss_pred HHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 633 VAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 633 ~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
++.+||+.+|++||+++|++++.|+...
T Consensus 232 li~~~l~~~P~~Rp~~~eil~~~~~~~~ 259 (279)
T cd06619 232 FITQCMRKQPKERPAPENLMDHPFIVQY 259 (279)
T ss_pred HHHHHhhCChhhCCCHHHHhcCcccccc
Confidence 8889999999999999999999887543
|
Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p |
| >cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=261.62 Aligned_cols=223 Identities=19% Similarity=0.370 Sum_probs=164.3
Q ss_pred HcCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA 493 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~ 493 (667)
.++|+..+.||+|+||.||+|... .+..+|||++.... ......+|.+|+.++++++||||+++++++.+.
T Consensus 5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~---~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~ 81 (277)
T cd05062 5 REKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAA---SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG 81 (277)
T ss_pred HHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccC---CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC
Confidence 467889999999999999999753 24579999875422 123345799999999999999999999999999
Q ss_pred CceEEEEEecCCCChHHHhccccC----------------------------------CcccccccCCeeecCCCceEEe
Q 042735 494 RHSILIYEYLKRGSLATNLSNDAA----------------------------------AEELDISSKNVLLDLEHKAHVS 539 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~~----------------------------------~~~~dlk~~NiLld~~~~~kl~ 539 (667)
...++||||+++|+|.+++..... ..|.||||+||+++.++.+||+
T Consensus 82 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~~l~ 161 (277)
T cd05062 82 QPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIG 161 (277)
T ss_pred CCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCCEEEC
Confidence 999999999999999988753110 1123999999999999999999
Q ss_pred cccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhcc
Q 042735 540 DFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDE 610 (667)
Q Consensus 540 DFGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~ 610 (667)
|||+++........ .....+++.||||| ++.++|||||||++|||+| |+.||..... ......
T Consensus 162 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~----~~~~~~---- 233 (277)
T cd05062 162 DFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSN----EQVLRF---- 233 (277)
T ss_pred CCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCH----HHHHHH----
Confidence 99999755332211 11234578899999 3668999999999999999 6888753211 111111
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 611 MLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
......+..... ....+.+++.+||+.+|++|||+.|+++.+.
T Consensus 234 ~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~ 276 (277)
T cd05062 234 VMEGGLLDKPDN---CPDMLFELMRMCWQYNPKMRPSFLEIISSIK 276 (277)
T ss_pred HHcCCcCCCCCC---CCHHHHHHHHHHcCCChhhCcCHHHHHHHhh
Confidence 111111111111 1235678889999999999999999998864
|
Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh |
| >cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=259.05 Aligned_cols=221 Identities=27% Similarity=0.492 Sum_probs=165.7
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|+..+.||+|+||.||+|...++..+|+|.+.... ...++|.+|++++++++||||+++++++...+..++||
T Consensus 6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~-----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 80 (261)
T cd05068 6 TSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT-----MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVT 80 (261)
T ss_pred hheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCc-----ccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeee
Confidence 4678889999999999999998777889999876432 12456899999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc---C-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCC-
Q 042735 501 EYLKRGSLATNLSNDA---A-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN- 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~---~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~- 553 (667)
||+++|+|.+++.... . ..|.||||+||++++++.+||+|||+++........
T Consensus 81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~ 160 (261)
T cd05068 81 ELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEA 160 (261)
T ss_pred ecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCcccc
Confidence 9999999998875432 0 112399999999999999999999999876532211
Q ss_pred cccccccccccCCCC------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 WSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....++..|+|||+ +.++|||||||++|||+| |+.||..... ..... ....... .+.+ . ..
T Consensus 161 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~----~~~~~-~~~~~~~--~~~~-~---~~ 229 (261)
T cd05068 161 REGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTN----AEVLQ-QVDQGYR--MPCP-P---GC 229 (261)
T ss_pred cCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH----HHHHH-HHHcCCC--CCCC-C---cC
Confidence 111223457999994 568999999999999999 9988753221 11111 1111111 1111 1 11
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
...+.+++.+||+.+|++||++.++.+.|..
T Consensus 230 ~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~ 260 (261)
T cd05068 230 PKELYDIMLDCWKEDPDDRPTFETLQWKLED 260 (261)
T ss_pred CHHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence 2356788899999999999999999998763
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a |
| >cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=267.95 Aligned_cols=233 Identities=24% Similarity=0.361 Sum_probs=172.4
Q ss_pred cCHHHHHHHHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEE
Q 042735 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYG 488 (667)
Q Consensus 411 ~~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g 488 (667)
+++.++..++++|+..+.||+|+||.||+|.. .+++.+|+|.+.... .....+.+|+.++.++ +|||++++++
T Consensus 12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~-----~~~~~~~~e~~~l~~l~~h~ni~~~~~ 86 (291)
T cd06639 12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS-----DVDEEIEAEYNILQSLPNHPNVVKFYG 86 (291)
T ss_pred hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc-----cHHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 45566667788999999999999999999976 567889999875421 1234677899999999 7999999999
Q ss_pred EEEeC-----CceEEEEEecCCCChHHHhccc-----c-----------------------CCcccccccCCeeecCCCc
Q 042735 489 FCSHA-----RHSILIYEYLKRGSLATNLSND-----A-----------------------AAEELDISSKNVLLDLEHK 535 (667)
Q Consensus 489 ~~~~~-----~~~~lv~ey~~~g~L~~~l~~~-----~-----------------------~~~~~dlk~~NiLld~~~~ 535 (667)
++... +..++||||+++|+|.+.+... . ...|.||||+||+++.++.
T Consensus 87 ~~~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~ 166 (291)
T cd06639 87 MFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGG 166 (291)
T ss_pred EEEeccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCC
Confidence 98754 3589999999999998776421 0 0113399999999999999
Q ss_pred eEEecccccccccCCCCCcccccccccccCCCC-----------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhh
Q 042735 536 AHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDY-----------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVI 604 (667)
Q Consensus 536 ~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE~-----------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~ 604 (667)
+||+|||+++.............|+..|+|||+ +.++|||||||++|||+||+.|+...... ....
T Consensus 167 ~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~---~~~~ 243 (291)
T cd06639 167 VKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPV---KTLF 243 (291)
T ss_pred EEEeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHH---HHHH
Confidence 999999999876543322334578999999993 56899999999999999999997532211 0010
Q ss_pred hhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 605 NMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
. ......+....+ ......+.+++.+||+.+|++||++.|++++.|+
T Consensus 244 ~--~~~~~~~~~~~~----~~~~~~l~~li~~~l~~~p~~Rps~~~il~~~~~ 290 (291)
T cd06639 244 K--IPRNPPPTLLHP----EKWCRSFNHFISQCLIKDFEARPSVTHLLEHPFI 290 (291)
T ss_pred H--HhcCCCCCCCcc----cccCHHHHHHHHHHhhcChhhCcCHHHHhcCccc
Confidence 0 000001111111 1122357788899999999999999999998775
|
Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre |
| >cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=263.18 Aligned_cols=227 Identities=25% Similarity=0.333 Sum_probs=164.8
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-Cc--eEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-KE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-~~--~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~ 496 (667)
++|+..+.||+|+||.||+|...+ +. .+++|.++.... ....+.|.+|++++.++ +||||+++++++.+.+..
T Consensus 2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~ 78 (297)
T cd05089 2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFAS---ENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYL 78 (297)
T ss_pred ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCC---HHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcc
Confidence 578888999999999999998644 32 468887653221 22345789999999999 699999999999999999
Q ss_pred EEEEEecCCCChHHHhcccc----------------------------------------CCcccccccCCeeecCCCce
Q 042735 497 ILIYEYLKRGSLATNLSNDA----------------------------------------AAEELDISSKNVLLDLEHKA 536 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~----------------------------------------~~~~~dlk~~NiLld~~~~~ 536 (667)
++||||+++|+|.+++.... ...|.||||+|||++.++.+
T Consensus 79 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~ 158 (297)
T cd05089 79 YIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLAS 158 (297)
T ss_pred eEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEECCCCeE
Confidence 99999999999998875421 01133999999999999999
Q ss_pred EEecccccccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhc
Q 042735 537 HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLD 609 (667)
Q Consensus 537 kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~ 609 (667)
||+|||++........ ......+..|+||| ++.++|||||||++|||+| |+.||..... ....... .
T Consensus 159 kl~dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~----~~~~~~~-~ 232 (297)
T cd05089 159 KIADFGLSRGEEVYVK-KTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTC----AELYEKL-P 232 (297)
T ss_pred EECCcCCCccccceec-cCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH----HHHHHHH-h
Confidence 9999999874322111 11223356799999 4678999999999999998 9999753211 1111111 1
Q ss_pred cccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 610 EMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
....+..+... ...+.+++.+||+.+|.+|||+++++++|......+
T Consensus 233 ~~~~~~~~~~~------~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~ 279 (297)
T cd05089 233 QGYRMEKPRNC------DDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEAR 279 (297)
T ss_pred cCCCCCCCCCC------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhh
Confidence 11111111111 124668888999999999999999999988776544
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=290.75 Aligned_cols=227 Identities=25% Similarity=0.353 Sum_probs=165.1
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|... .++.||+|++...... .....++|.+|++++++++|||||++++++.+.+..++|
T Consensus 2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~-~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLV 80 (932)
T PRK13184 2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSE-NPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYT 80 (932)
T ss_pred CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECccccc-CHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEE
Confidence 57888999999999999999864 5788999998754322 223356799999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccc-----------------------------------cCCcccccccCCeeecCCCceEEeccccc
Q 042735 500 YEYLKRGSLATNLSND-----------------------------------AAAEELDISSKNVLLDLEHKAHVSDFGIA 544 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~-----------------------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla 544 (667)
|||+++|+|.+.+... ....|.||||+||+++.++.+||+|||++
T Consensus 81 MEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~vKLiDFGLA 160 (932)
T PRK13184 81 MPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAA 160 (932)
T ss_pred EEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCCEEEEecCcc
Confidence 9999999998876421 01123499999999999999999999999
Q ss_pred ccccCCC------------------CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCC
Q 042735 545 KFLKPDS------------------SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPS 600 (667)
Q Consensus 545 ~~~~~~~------------------~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~ 600 (667)
+...... ......+||+.||||| ++.++|||||||++|||+||+.||......
T Consensus 161 k~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~--- 237 (932)
T PRK13184 161 IFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGR--- 237 (932)
T ss_pred eecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchh---
Confidence 8652110 0012357999999999 467899999999999999999998532210
Q ss_pred hhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCC-HHHHHHHHHH
Q 042735 601 PSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPT-MQTITQQLLF 657 (667)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt-~~ev~~~l~~ 657 (667)
.... .....++....+. ......+.+++.+|++.+|++||+ ++++.+.+..
T Consensus 238 -ki~~--~~~i~~P~~~~p~---~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~ 289 (932)
T PRK13184 238 -KISY--RDVILSPIEVAPY---REIPPFLSQIAMKALAVDPAERYSSVQELKQDLEP 289 (932)
T ss_pred -hhhh--hhhccChhhcccc---ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 0000 0011111111111 111234667888999999999965 5555555443
|
|
| >KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-33 Score=257.64 Aligned_cols=223 Identities=24% Similarity=0.330 Sum_probs=164.9
Q ss_pred cceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHH-hcCCCCeeEEEEEEEeCCceEEEEEec
Q 042735 426 KYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT-KIRHRNIVKFYGFCSHARHSILIYEYL 503 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~-~l~H~niv~~~g~~~~~~~~~lv~ey~ 503 (667)
...||.|+||+|++-.+ ++|+..|||++..... ..+++++..|.+... .-+.||||++||.+..++..|+.||.|
T Consensus 69 lg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~---~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELM 145 (361)
T KOG1006|consen 69 LGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNI---EKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELM 145 (361)
T ss_pred HHHhcCCcchhhhhhhcCccCcEEEEEEeeeccc---hHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHH
Confidence 35789999999999865 6799999999876432 456788999998654 556999999999999999999999998
Q ss_pred CCCChHHHhc------c------------------------ccCCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 504 KRGSLATNLS------N------------------------DAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 504 ~~g~L~~~l~------~------------------------~~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
.- |+..+.. . .-...|.|+||+|||+|..|.+|+||||++..+... ..
T Consensus 146 d~-SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~S-iA 223 (361)
T KOG1006|consen 146 DI-SLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDS-IA 223 (361)
T ss_pred hh-hHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEEecCCCEeeecccchHhHHHH-HH
Confidence 63 4433211 0 001124599999999999999999999999876532 22
Q ss_pred cccccccccccCCC--------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 554 WSALVGTYRYVAPD--------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE--------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
.+.-+|-..||||| |+-+|||||+|++|||++||+.|+..+..+..+... ...-||.......+...
T Consensus 224 kT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~svfeql~~-----Vv~gdpp~l~~~~~~~~ 298 (361)
T KOG1006|consen 224 KTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDSVFEQLCQ-----VVIGDPPILLFDKECVH 298 (361)
T ss_pred hhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHHHHHHHHH-----HHcCCCCeecCcccccc
Confidence 34567889999999 778999999999999999999998644332211110 01113322222233333
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
....+..++..|+-+|-..||...++.+..+..
T Consensus 299 ~s~~~~~fintCl~Kd~~~Rpky~~Lk~~~fyr 331 (361)
T KOG1006|consen 299 YSFSMVRFINTCLIKDRSDRPKYDDLKKFPFYR 331 (361)
T ss_pred cCHHHHHHHHHHhhcccccCcchhhhhcCchhh
Confidence 455788899999999999999999998876554
|
|
| >cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=269.21 Aligned_cols=225 Identities=27% Similarity=0.407 Sum_probs=164.1
Q ss_pred cCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHA 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~ 493 (667)
++|...+.||+|+||.||+|... .++.||+|++..... ....+.+.+|+.++.++ +||||++++++|...
T Consensus 7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~---~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~ 83 (337)
T cd05054 7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGAT---ASEYKALMTELKILIHIGHHLNVVNLLGACTKP 83 (337)
T ss_pred HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCC---HHHHHHHHHHHHHHHhhccCcchhheeeeEecC
Confidence 36778899999999999999642 246799998864322 22345688999999999 799999999988654
Q ss_pred -CceEEEEEecCCCChHHHhcccc--------------------------------------------------------
Q 042735 494 -RHSILIYEYLKRGSLATNLSNDA-------------------------------------------------------- 516 (667)
Q Consensus 494 -~~~~lv~ey~~~g~L~~~l~~~~-------------------------------------------------------- 516 (667)
...+++|||+++|+|.+.+....
T Consensus 84 ~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (337)
T cd05054 84 GGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGD 163 (337)
T ss_pred CCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhh
Confidence 56889999999999988774211
Q ss_pred -----------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC--cccccccccccC
Q 042735 517 -----------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVA 565 (667)
Q Consensus 517 -----------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~--~~~~~Gt~~y~a 565 (667)
...|.||||+||+++.++.+||+|||+++.+...... .....++..|+|
T Consensus 164 ~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~a 243 (337)
T cd05054 164 ELYKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMA 243 (337)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccC
Confidence 0113399999999999999999999999876433221 223456778999
Q ss_pred CC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhcc
Q 042735 566 PD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCL 638 (667)
Q Consensus 566 PE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl 638 (667)
|| |+.++|||||||++|||+| |+.||..... .... ............+. ....++.+++.+||
T Consensus 244 PE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~---~~~~-~~~~~~~~~~~~~~------~~~~~~~~l~~~cl 313 (337)
T cd05054 244 PESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQI---DEEF-CRRLKEGTRMRAPE------YATPEIYSIMLDCW 313 (337)
T ss_pred cHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCc---cHHH-HHHHhccCCCCCCc------cCCHHHHHHHHHHc
Confidence 99 5779999999999999998 9999753211 1111 01111111111111 12235778899999
Q ss_pred ccCCCCCCCHHHHHHHHHHh
Q 042735 639 DVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 639 ~~~p~~RPt~~ev~~~l~~~ 658 (667)
+.+|++||++.||+++|...
T Consensus 314 ~~~p~~RPs~~ell~~l~~~ 333 (337)
T cd05054 314 HNNPEDRPTFSELVEILGDL 333 (337)
T ss_pred cCChhhCcCHHHHHHHHHHH
Confidence 99999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto |
| >cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=279.31 Aligned_cols=221 Identities=21% Similarity=0.304 Sum_probs=160.9
Q ss_pred ceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHH-HHHhcCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 427 YCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIE-ALTKIRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~-~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
+.||+|+||.||+|+. .++..+|+|++....... ....+.+.+|.. +++.++||||+++++++...+..++||||++
T Consensus 1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~-~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~ 79 (325)
T cd05604 1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLN-RKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVN 79 (325)
T ss_pred CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhh-hhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCC
Confidence 3689999999999976 567889999876432111 123345666665 4677999999999999999999999999999
Q ss_pred CCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccccccc
Q 042735 505 RGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560 (667)
Q Consensus 505 ~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt 560 (667)
+|+|...+..... ..|.||||+|||++.++.+||+|||+++............+||
T Consensus 80 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt 159 (325)
T cd05604 80 GGELFFHLQRERSFPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGT 159 (325)
T ss_pred CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCCcccccCC
Confidence 9999877653221 1234999999999999999999999998643333334456899
Q ss_pred ccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHH
Q 042735 561 YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634 (667)
Q Consensus 561 ~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (667)
+.||||| |+.++|||||||++|||+||+.||..... .......... ....++.. ...+.+++
T Consensus 160 ~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~----~~~~~~~~~~--~~~~~~~~------~~~~~~ll 227 (325)
T cd05604 160 PEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDV----AEMYDNILHK--PLVLRPGA------SLTAWSIL 227 (325)
T ss_pred hhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCH----HHHHHHHHcC--CccCCCCC------CHHHHHHH
Confidence 9999999 56789999999999999999999853221 1111111111 11111111 12456788
Q ss_pred HhccccCCCCCCCH----HHHHHHHHHhhh
Q 042735 635 FSCLDVSPESRPTM----QTITQQLLFSLV 660 (667)
Q Consensus 635 ~~Cl~~~p~~RPt~----~ev~~~l~~~~~ 660 (667)
.+|++.+|.+||++ .+++++.||...
T Consensus 228 ~~ll~~~p~~R~~~~~~~~~i~~h~~f~~~ 257 (325)
T cd05604 228 EELLEKDRQRRLGAKEDFLEIQEHPFFESL 257 (325)
T ss_pred HHHhccCHHhcCCCCCCHHHHhcCCCcCCC
Confidence 89999999999976 578887777643
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, |
| >cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=264.73 Aligned_cols=227 Identities=22% Similarity=0.369 Sum_probs=169.0
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
+.|+..+.||+|+||.||+|+.. ++..+++|.+... .....+.+.+|++++++++||||+++++++..+...++|
T Consensus 12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (292)
T cd06644 12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETK----SEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIM 87 (292)
T ss_pred hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccC----CHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEE
Confidence 45777889999999999999875 4788999987542 223456789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||+++|+|...+.... ...|.|+||+||+++.++.+||+|||++..........
T Consensus 88 ~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~ 167 (292)
T cd06644 88 IEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRR 167 (292)
T ss_pred EecCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccceecccccccc
Confidence 99999999977653211 11234999999999999999999999987644332233
Q ss_pred ccccccccccCCCC-----------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 555 SALVGTYRYVAPDY-----------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~-----------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
....|++.|+|||+ +.++|||||||++|||+||+.|+...... ... ........+....+.
T Consensus 168 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~----~~~-~~~~~~~~~~~~~~~--- 239 (292)
T cd06644 168 DSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPM----RVL-LKIAKSEPPTLSQPS--- 239 (292)
T ss_pred ceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHH----HHH-HHHhcCCCccCCCCc---
Confidence 44578999999994 34799999999999999999997532210 000 011111111111111
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.....+.+++.+||+.+|++||+++|++++.++..+
T Consensus 240 -~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~ 275 (292)
T cd06644 240 -KWSMEFRDFLKTALDKHPETRPSAAQLLEHPFVSSV 275 (292)
T ss_pred -ccCHHHHHHHHHHhcCCcccCcCHHHHhcCcccccc
Confidence 112346778889999999999999999999887644
|
Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. |
| >cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-30 Score=260.03 Aligned_cols=223 Identities=22% Similarity=0.371 Sum_probs=160.6
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCc----eEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKE----FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~----~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
++|+..+.||+|+||.||+|.+. ++. .+++|.+.... ......++..|+..+++++|||||+++|++.. ..
T Consensus 7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~-~~ 82 (279)
T cd05111 7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRS---GRQTFQEITDHMLAMGSLDHAYIVRLLGICPG-AS 82 (279)
T ss_pred hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeeccccc---chHHHHHHHHHHHHHhcCCCCCcceEEEEECC-Cc
Confidence 46778889999999999999864 343 36777764321 12233568889999999999999999998854 55
Q ss_pred eEEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCC
Q 042735 496 SILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
.++++||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++.....
T Consensus 83 ~~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~ 162 (279)
T cd05111 83 LQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLLYPD 162 (279)
T ss_pred cEEEEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCccceeccCC
Confidence 7889999999999988854211 123499999999999999999999999875433
Q ss_pred CC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 551 SS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 551 ~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
.. ..+...|+..|+||| |+.++|||||||++||++| |+.||..... .......... ...+.+ .
T Consensus 163 ~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~-----~~~~~~~~~~--~~~~~~-~ 234 (279)
T cd05111 163 DKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRP-----HEVPDLLEKG--ERLAQP-Q 234 (279)
T ss_pred CcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCH-----HHHHHHHHCC--CcCCCC-C
Confidence 22 123456778999999 4678999999999999998 9999753221 1101111111 111111 1
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
. ....+.+++.+||..+|++|||++|+++.+...
T Consensus 235 ~---~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~ 268 (279)
T cd05111 235 I---CTIDVYMVMVKCWMIDENVRPTFKELANEFTRM 268 (279)
T ss_pred C---CCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence 1 122456788899999999999999999987664
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r |
| >KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-32 Score=251.30 Aligned_cols=227 Identities=21% Similarity=0.311 Sum_probs=171.6
Q ss_pred cCCcCcceeecccCeEEEEEE-eCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
+.|+..++||+|.|+.||++. .++|+.+|+|.+.....+.. +.+...+|++|.+.++|||||++...+.+....|+|
T Consensus 11 d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~--~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylv 88 (355)
T KOG0033|consen 11 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSAR--DFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 88 (355)
T ss_pred hhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccc--cHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEE
Confidence 456677789999999999985 56788899998875544332 456788999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcc------------------------ccCCcccccccCCeeecC---CCceEEecccccccccCCCC
Q 042735 500 YEYLKRGSLATNLSN------------------------DAAAEELDISSKNVLLDL---EHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~------------------------~~~~~~~dlk~~NiLld~---~~~~kl~DFGla~~~~~~~~ 552 (667)
+|+|+||+|..-+-. .....|.|+||+|+++.. .--+|++|||+|..+. +..
T Consensus 89 Fe~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~-~g~ 167 (355)
T KOG0033|consen 89 FDLVTGGELFEDIVAREFYSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVN-DGE 167 (355)
T ss_pred EecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEeC-Ccc
Confidence 999999999543211 112235599999999953 3458999999999887 555
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.+..++|||+||||| |...+|||+.|||||-++.|..||...+....+. .+.......+.+++...
T Consensus 168 ~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye--------~I~~g~yd~~~~~w~~i 239 (355)
T KOG0033|consen 168 AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYE--------QIKAGAYDYPSPEWDTV 239 (355)
T ss_pred ccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHHHHH--------HHhccccCCCCcccCcC
Confidence 677789999999999 7888999999999999999999985322111111 11111111111122222
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
..+..+++.+++..||.+|-|+.|.+++.|-.
T Consensus 240 s~~Ak~LvrrML~~dP~kRIta~EAL~HpWi~ 271 (355)
T KOG0033|consen 240 TPEAKSLIRRMLTVNPKKRITADEALKHPWIC 271 (355)
T ss_pred CHHHHHHHHHHhccChhhhccHHHHhCCchhc
Confidence 22445777899999999999999999998865
|
|
| >cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=281.09 Aligned_cols=233 Identities=24% Similarity=0.327 Sum_probs=166.9
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|+.. ++..+|+|++...... .......+.+|+.++.+++||||+++++++.+.+..++|
T Consensus 1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv 79 (360)
T cd05627 1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADML-EKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLI 79 (360)
T ss_pred CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHh-hhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEE
Confidence 46888899999999999999764 5788999987542111 112345688899999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCC----
Q 042735 500 YEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS---- 551 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~---- 551 (667)
|||+++|+|.+.+..... ..|.||||+|||++.++.+||+|||+++......
T Consensus 80 ~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~ 159 (360)
T cd05627 80 MEFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEF 159 (360)
T ss_pred EeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCccccccccccc
Confidence 999999999988754321 1234999999999999999999999987543210
Q ss_pred -------------------------------CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCC
Q 042735 552 -------------------------------SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFV 594 (667)
Q Consensus 552 -------------------------------~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~ 594 (667)
......+||+.|+||| |+.++|||||||++|||+||+.||...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~ 239 (360)
T cd05627 160 YRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSE 239 (360)
T ss_pred ccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCC
Confidence 0012357999999999 678999999999999999999998532
Q ss_pred ccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCC---CHHHHHHHHHHhhhhhc
Q 042735 595 SSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRP---TMQTITQQLLFSLVYFS 663 (667)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RP---t~~ev~~~l~~~~~~~~ 663 (667)
.. ................++..+. .. ++.+++.+++ .+|.+|+ +++|++++.||..+.|.
T Consensus 240 ~~----~~~~~~i~~~~~~~~~p~~~~~-s~---~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~~~~ 302 (360)
T cd05627 240 TP----QETYRKVMNWKETLVFPPEVPI-SE---KAKDLILRFC-TDSENRIGSNGVEEIKSHPFFEGVDWG 302 (360)
T ss_pred CH----HHHHHHHHcCCCceecCCCCCC-CH---HHHHHHHHhc-cChhhcCCCCCHHHHhcCCCCCCCCHH
Confidence 21 0111110000001111211111 11 2344555544 4899998 58999999998876543
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul |
| >cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=261.71 Aligned_cols=228 Identities=22% Similarity=0.322 Sum_probs=169.2
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|.. .++..+|||++..... .......+|.+|++++++++||||+++++++.+++..+++
T Consensus 2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~-~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v 80 (267)
T cd08229 2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDL-MDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 80 (267)
T ss_pred chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhh-hhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEE
Confidence 4677888999999999999985 5788999998754322 1223446789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccc----c------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 500 YEYLKRGSLATNLSND----A------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~----~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
|||+++++|.+++... . ...|.||||+||+++.++.+||+|||+++......
T Consensus 81 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~ 160 (267)
T cd08229 81 LELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT 160 (267)
T ss_pred EEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhhhccccCC
Confidence 9999999998876421 0 01123999999999999999999999998765443
Q ss_pred CCcccccccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 552 SNWSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
.......|+..|+|||+ +.++||||||+++|||++|+.||...... ..... ........+..+. . .
T Consensus 161 ~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~--~~~~~-~~~~~~~~~~~~~---~--~ 232 (267)
T cd08229 161 TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN--LYSLC-KKIEQCDYPPLPS---D--H 232 (267)
T ss_pred cccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccch--HHHHh-hhhhcCCCCCCCc---c--c
Confidence 33344678999999993 56799999999999999999997422110 00000 1111111111111 1 1
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
....+.+++.+||+.+|++||||.+|++.+..
T Consensus 233 ~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~ 264 (267)
T cd08229 233 YSEELRQLVNMCINPDPEKRPDITYVYDVAKR 264 (267)
T ss_pred ccHHHHHHHHHhcCCCcccCCCHHHHHHHHhh
Confidence 22356778889999999999999999887654
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. |
| >cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=262.61 Aligned_cols=219 Identities=24% Similarity=0.389 Sum_probs=152.9
Q ss_pred eeecccCeEEEEEEeCC---CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 428 CIGSGRHGSVYRAELPS---KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 428 ~lg~g~~g~vy~~~~~~---~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
.||+|+||.||+|...+ ...+++|.+.... .......|.+|+++++.++||||++++|++.+.+..++||||++
T Consensus 2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~ 78 (269)
T cd05042 2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASA---TPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCP 78 (269)
T ss_pred cCCccCCceEEEEEEecCCCCeEEEEeecCccC---ChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCC
Confidence 58999999999997543 3457788765322 22334578999999999999999999999999999999999999
Q ss_pred CCChHHHhccccC-----------------------------CcccccccCCeeecCCCceEEecccccccccCCCC--C
Q 042735 505 RGSLATNLSNDAA-----------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS--N 553 (667)
Q Consensus 505 ~g~L~~~l~~~~~-----------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~--~ 553 (667)
+|+|.+++..... ..|.||||+||+++.++.+||+|||+++....... .
T Consensus 79 ~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~ 158 (269)
T cd05042 79 LGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYIT 158 (269)
T ss_pred CCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEeccccccccccchheec
Confidence 9999988754211 11339999999999999999999999975432211 1
Q ss_pred cccccccccccCCCC-------------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCC
Q 042735 554 WSALVGTYRYVAPDY-------------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE~-------------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (667)
.....+++.|+|||+ +.++|||||||++|||++ |+.||..... ......... ..+..++.+
T Consensus 159 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~----~~~~~~~~~-~~~~~~~~~ 233 (269)
T cd05042 159 KDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSD----EQVLKQVVR-EQDIKLPKP 233 (269)
T ss_pred cCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCH----HHHHHHHhh-ccCccCCCC
Confidence 123346778999993 458999999999999999 7778753221 011111111 111111111
Q ss_pred CCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 620 ~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
... ......+.+++..|| .+|++|||++||.+.+.
T Consensus 234 ~~~-~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~ 268 (269)
T cd05042 234 QLD-LKYSDRWYEVMQFCW-LDPETRPTAEEVHELLT 268 (269)
T ss_pred ccc-ccCCHHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence 100 011123456677898 59999999999998763
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina |
| >cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=254.66 Aligned_cols=215 Identities=23% Similarity=0.399 Sum_probs=160.5
Q ss_pred eeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCCCC
Q 042735 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGS 507 (667)
Q Consensus 428 ~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~g~ 507 (667)
.||+|+||.||+|...++..+|+|.+..... ......|.+|++++++++||||+++++++...+..++||||+++|+
T Consensus 2 ~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~ 78 (250)
T cd05085 2 LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLP---QELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGD 78 (250)
T ss_pred ccCCCCCceEEEEEecCCcEEEEEecCCcCC---HHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCc
Confidence 6899999999999988888999998765432 2234568999999999999999999999999999999999999999
Q ss_pred hHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC-cccccccc
Q 042735 508 LATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN-WSALVGTY 561 (667)
Q Consensus 508 L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~-~~~~~Gt~ 561 (667)
|.+++..... ..|.|+||+||+++.++.+||+|||+++........ .....+++
T Consensus 79 L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~ 158 (250)
T cd05085 79 FLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPI 158 (250)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCccceeccccccccCCCCCCcc
Confidence 9887753211 113499999999999999999999999754332211 11234467
Q ss_pred cccCCCC------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHH
Q 042735 562 RYVAPDY------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634 (667)
Q Consensus 562 ~y~aPE~------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (667)
.|+|||+ +.++|||||||++||+++ |..||..... ... ............+.. ....+.+++
T Consensus 159 ~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~----~~~-~~~~~~~~~~~~~~~------~~~~~~~li 227 (250)
T cd05085 159 KWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTN----QQA-REQVEKGYRMSCPQK------CPDDVYKVM 227 (250)
T ss_pred cccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCH----HHH-HHHHHcCCCCCCCCC------CCHHHHHHH
Confidence 8999993 568999999999999999 9989753221 111 111111111111111 123567888
Q ss_pred HhccccCCCCCCCHHHHHHHHH
Q 042735 635 FSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 635 ~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
.+||+.+|++||++.|+.+.+.
T Consensus 228 ~~~l~~~p~~Rp~~~~l~~~l~ 249 (250)
T cd05085 228 QRCWDYKPENRPKFSELQKELA 249 (250)
T ss_pred HHHcccCcccCCCHHHHHHHhc
Confidence 9999999999999999998863
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c |
| >cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=269.38 Aligned_cols=235 Identities=17% Similarity=0.283 Sum_probs=167.2
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|+.. ++..+|+|++...... .....+.+|++++++++||||+++++++..++..++|
T Consensus 6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 82 (309)
T cd07872 6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEE---GAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLV 82 (309)
T ss_pred CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccC---CcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEE
Confidence 56888899999999999999864 5778999988643221 1234578899999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||+++ +|.+.+.... ...|.||||+||+++.++.+||+|||+++.........
T Consensus 83 ~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~ 161 (309)
T cd07872 83 FEYLDK-DLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTY 161 (309)
T ss_pred EeCCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECccccceecCCCcccc
Confidence 999985 7766553221 11244999999999999999999999998654333333
Q ss_pred ccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh----------hhh---ccccCC
Q 042735 555 SALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN----------MRL---DEMLDP 614 (667)
Q Consensus 555 ~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~----------~~~---~~~~~~ 614 (667)
....||+.|+||| ++.++|||||||++|||+||+.||.............. ... ....+.
T Consensus 162 ~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (309)
T cd07872 162 SNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNY 241 (309)
T ss_pred ccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhh
Confidence 4457899999999 35679999999999999999999853221000000000 000 000000
Q ss_pred CCCCCCC-----chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 615 RLPPPSP-----DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 615 ~~~~~~~-----~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..+...+ ........+.+++.+|++.||++|||++|++++.|+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~ 291 (309)
T cd07872 242 NFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMKHAYFRS 291 (309)
T ss_pred hcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhcChhhhh
Confidence 0000000 00011124568889999999999999999999999975
|
Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play |
| >cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-30 Score=262.13 Aligned_cols=226 Identities=27% Similarity=0.443 Sum_probs=167.7
Q ss_pred cCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
.+|...+.||+|+||.||+|+.. ++..+++|.+... .....+.+.+|++++++++||||+++++++...+
T Consensus 5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~ 80 (291)
T cd05094 5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDP----TLAARKDFQREAELLTNLQHEHIVKFYGVCGDGD 80 (291)
T ss_pred HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCc----cHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCC
Confidence 45777889999999999999742 3456888887542 2234467999999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhccccC----------------------------------------CcccccccCCeeecCCC
Q 042735 495 HSILIYEYLKRGSLATNLSNDAA----------------------------------------AEELDISSKNVLLDLEH 534 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~~----------------------------------------~~~~dlk~~NiLld~~~ 534 (667)
..++||||+++|+|.+++..... ..|.||||+||+++.++
T Consensus 81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~~~ 160 (291)
T cd05094 81 PLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANL 160 (291)
T ss_pred ceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCC
Confidence 99999999999999988753210 11239999999999999
Q ss_pred ceEEecccccccccCCCC--CcccccccccccCCCC------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhh
Q 042735 535 KAHVSDFGIAKFLKPDSS--NWSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVIN 605 (667)
Q Consensus 535 ~~kl~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~ 605 (667)
.+||+|||+++....... ......|+..|+|||+ +.++|||||||++|||+| |+.||..... .....
T Consensus 161 ~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~----~~~~~ 236 (291)
T cd05094 161 LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSN----TEVIE 236 (291)
T ss_pred cEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH----HHHHH
Confidence 999999999986543221 1223457889999993 568999999999999999 9999753221 11111
Q ss_pred hhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 606 MRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.+.....+..... ....+.+++.+||+.+|++|||+++|++.+......
T Consensus 237 ----~~~~~~~~~~~~~---~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~~ 285 (291)
T cd05094 237 ----CITQGRVLERPRV---CPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGKA 285 (291)
T ss_pred ----HHhCCCCCCCCcc---CCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHhh
Confidence 1111111111111 123567888999999999999999999999877543
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n |
| >cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-30 Score=256.51 Aligned_cols=216 Identities=25% Similarity=0.381 Sum_probs=158.4
Q ss_pred eeecccCeEEEEEEe---CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 428 CIGSGRHGSVYRAEL---PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 428 ~lg~g~~g~vy~~~~---~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
.||+|+||.||+|.+ .++..+|+|++..... .....++|.+|+.++++++||||++++|++. .+..++||||++
T Consensus 2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~ 78 (257)
T cd05116 2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNN--DPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAE 78 (257)
T ss_pred cCCCcCCcceEEeEEecCCCceEEEEEEccCCCC--cHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCC
Confidence 589999999999965 3467899998764322 2234567999999999999999999999885 456789999999
Q ss_pred CCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC---cccc
Q 042735 505 RGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN---WSAL 557 (667)
Q Consensus 505 ~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~---~~~~ 557 (667)
+|+|.+++..... ..|.||||+||+++.++.+||+|||+++........ ....
T Consensus 79 ~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 158 (257)
T cd05116 79 LGPLNKFLQKNKHVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHG 158 (257)
T ss_pred CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCC
Confidence 9999888754221 123499999999999999999999999876443221 1223
Q ss_pred cccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 558 VGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 558 ~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
.+++.|+||| ++.++|||||||++|||+| |+.||..... ..... .+.....+..+... ...+
T Consensus 159 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~----~~~~~-~i~~~~~~~~~~~~------~~~l 227 (257)
T cd05116 159 KWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKG----NEVTQ-MIESGERMECPQRC------PPEM 227 (257)
T ss_pred CCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH----HHHHH-HHHCCCCCCCCCCC------CHHH
Confidence 4467899999 3558999999999999998 9999863221 11111 11111111222211 2246
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.+++.+||+.+|++||++++|.+.|..
T Consensus 228 ~~li~~~~~~~p~~Rp~~~~i~~~l~~ 254 (257)
T cd05116 228 YDLMKLCWTYGVDERPGFAVVELRLRN 254 (257)
T ss_pred HHHHHHHhccCchhCcCHHHHHHHHhc
Confidence 678889999999999999999998864
|
Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio |
| >cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-30 Score=255.71 Aligned_cols=215 Identities=23% Similarity=0.400 Sum_probs=158.0
Q ss_pred eeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCCC
Q 042735 428 CIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRG 506 (667)
Q Consensus 428 ~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~g 506 (667)
.||+|+||.||+|.. .+++.+|+|.+..... ......|.+|++++++++||||+++++++...+..++||||+++|
T Consensus 2 ~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~ 78 (252)
T cd05084 2 RIGRGNFGEVFSGRLRADNTPVAVKSCRETLP---PDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGG 78 (252)
T ss_pred ccCcccCccEEEEEEecCCceEEEEecCccCC---HHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCC
Confidence 589999999999986 4678899998754322 233457999999999999999999999999999999999999999
Q ss_pred ChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCc--ccccc
Q 042735 507 SLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW--SALVG 559 (667)
Q Consensus 507 ~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~--~~~~G 559 (667)
+|.+++..... ..|.||||+||+++.++.+||+|||+++......... ....+
T Consensus 79 ~L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~ 158 (252)
T cd05084 79 DFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQI 158 (252)
T ss_pred cHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccCcccccccccccCCCCCC
Confidence 99988754221 1133999999999999999999999998654321111 11123
Q ss_pred cccccCCCC------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHH
Q 042735 560 TYRYVAPDY------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632 (667)
Q Consensus 560 t~~y~aPE~------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (667)
+..|+|||+ +.++|||||||++|||++ |..|+..... ... ............+. .....+.+
T Consensus 159 ~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~----~~~-~~~~~~~~~~~~~~------~~~~~~~~ 227 (252)
T cd05084 159 PVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSN----QQT-REAIEQGVRLPCPE------LCPDAVYR 227 (252)
T ss_pred ceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCH----HHH-HHHHHcCCCCCCcc------cCCHHHHH
Confidence 457999993 567999999999999998 8888753221 001 01111111111111 11235678
Q ss_pred HHHhccccCCCCCCCHHHHHHHHH
Q 042735 633 VAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 633 ~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
++.+||+.+|++|||+.|+.+.|.
T Consensus 228 li~~~l~~~p~~Rps~~~~~~~l~ 251 (252)
T cd05084 228 LMERCWEYDPGQRPSFSTVHQELQ 251 (252)
T ss_pred HHHHHcCCChhhCcCHHHHHHHHh
Confidence 889999999999999999998874
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular |
| >cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-30 Score=258.11 Aligned_cols=221 Identities=24% Similarity=0.412 Sum_probs=164.8
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
.+|+..+.||+|+||.||+|... .+..+|+|.+... ....+++.+|++++++++||||+++++++...+..++|
T Consensus 6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~-----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 80 (263)
T cd05052 6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-----TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 80 (263)
T ss_pred HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCC-----chHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEE
Confidence 35778889999999999999864 4778999987542 12345789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 500 YEYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
|||+++|+|.+++.... ...|.||||+||+++.++.+||+|||+++........
T Consensus 81 ~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~ 160 (263)
T cd05052 81 TEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 160 (263)
T ss_pred EEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEEeCCCccccccccceee
Confidence 99999999998775321 0113499999999999999999999999876533211
Q ss_pred c-ccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 554 W-SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 554 ~-~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
. ....+++.|+||| ++.++|||||||++|||+| |..|+..... .... ........+..+..
T Consensus 161 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~----~~~~-~~~~~~~~~~~~~~------ 229 (263)
T cd05052 161 AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL----SQVY-ELLEKGYRMERPEG------ 229 (263)
T ss_pred ccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCH----HHHH-HHHHCCCCCCCCCC------
Confidence 1 1223466899999 3568999999999999998 8888753211 1110 11111111111111
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
....+.+++.+||+.+|++|||+.++.+.+..
T Consensus 230 ~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~ 261 (263)
T cd05052 230 CPPKVYELMRACWQWNPSDRPSFAEIHQAFET 261 (263)
T ss_pred CCHHHHHHHHHHccCCcccCCCHHHHHHHHHh
Confidence 12356778889999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays |
| >cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=263.77 Aligned_cols=228 Identities=21% Similarity=0.354 Sum_probs=164.3
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-----------------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCe
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-----------------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-----------------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~ni 483 (667)
.+|+..+.||+|+||.||+|.... +..+|+|++..... ....+.|.+|++++++++||||
T Consensus 5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i 81 (296)
T cd05051 5 QPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDAS---DNAREDFLKEVKILSRLSDPNI 81 (296)
T ss_pred hhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccC---HHHHHHHHHHHHHHHhcCCCCE
Confidence 578888999999999999987543 23578898764322 2345679999999999999999
Q ss_pred eEEEEEEEeCCceEEEEEecCCCChHHHhcccc-----------------------------------CCcccccccCCe
Q 042735 484 VKFYGFCSHARHSILIYEYLKRGSLATNLSNDA-----------------------------------AAEELDISSKNV 528 (667)
Q Consensus 484 v~~~g~~~~~~~~~lv~ey~~~g~L~~~l~~~~-----------------------------------~~~~~dlk~~Ni 528 (667)
+++++++...+..++||||+++++|.+++.... ...|.||||+||
T Consensus 82 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Ni 161 (296)
T cd05051 82 ARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNC 161 (296)
T ss_pred eEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchhce
Confidence 999999999999999999999999988775432 011339999999
Q ss_pred eecCCCceEEecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh--CCCCCCCCccCC
Q 042735 529 LLDLEHKAHVSDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK--GKHPRGFVSSIL 598 (667)
Q Consensus 529 Lld~~~~~kl~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt--G~~p~~~~~~~~ 598 (667)
+++.++.+||+|||+++....... ......+|+.||||| ++.++|||||||++|||++ |..|+.....
T Consensus 162 li~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~-- 239 (296)
T cd05051 162 LVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTD-- 239 (296)
T ss_pred eecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcCh--
Confidence 999999999999999986543221 122345678999999 3678999999999999998 6667643221
Q ss_pred CChhhhhhhhccccC-CCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 599 PSPSVINMRLDEMLD-PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 599 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
...... ...... .......+.......++.+++.+||+.+|++|||+.||.+.|.
T Consensus 240 --~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~ 295 (296)
T cd05051 240 --QQVIEN-AGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQ 295 (296)
T ss_pred --HHHHHH-HHhccccccccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence 111111 111100 0000000000011235778999999999999999999998875
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke |
| >cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=260.66 Aligned_cols=223 Identities=26% Similarity=0.419 Sum_probs=163.8
Q ss_pred CCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
+|...+.||+|+||.||+|... ....+++|.+..... ....+.+.+|+.++++++|||||++++++...+.
T Consensus 1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 77 (290)
T cd05045 1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENAS---SSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGP 77 (290)
T ss_pred CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCC---HHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCC
Confidence 4667789999999999999752 224688887754322 2234578999999999999999999999999999
Q ss_pred eEEEEEecCCCChHHHhcccc------------------------------------------------CCcccccccCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA------------------------------------------------AAEELDISSKN 527 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~------------------------------------------------~~~~~dlk~~N 527 (667)
.++|+||+++|+|.+++.... ...|.||||+|
T Consensus 78 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~n 157 (290)
T cd05045 78 LLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARN 157 (290)
T ss_pred cEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhhe
Confidence 999999999999998764310 01123999999
Q ss_pred eeecCCCceEEecccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCC
Q 042735 528 VLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSIL 598 (667)
Q Consensus 528 iLld~~~~~kl~DFGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~ 598 (667)
|++++++.+||+|||+++........ .....++..|+||| ++.++||||||+++|||+| |+.||....
T Consensus 158 ill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~--- 234 (290)
T cd05045 158 VLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIA--- 234 (290)
T ss_pred EEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCC---
Confidence 99999999999999999865432211 12335677899999 4678999999999999999 998875321
Q ss_pred CChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 599 PSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
+...............+. .....+.+++.+||+.+|++||+++|+++.|...
T Consensus 235 --~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~ 286 (290)
T cd05045 235 --PERLFNLLKTGYRMERPE------NCSEEMYNLMLTCWKQEPDKRPTFADISKELEKM 286 (290)
T ss_pred --HHHHHHHHhCCCCCCCCC------CCCHHHHHHHHHHccCCcccCCCHHHHHHHHHHH
Confidence 111111111111111111 1123567888999999999999999999988764
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi |
| >cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=258.58 Aligned_cols=225 Identities=24% Similarity=0.371 Sum_probs=169.7
Q ss_pred CcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|+..+.||+|+||.||+|.. .++..+|+|....... ....+.|.+|+.++++++||||+++++++.+++..++|||
T Consensus 6 ~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 82 (277)
T cd06641 6 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEA---EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 82 (277)
T ss_pred hhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccc---hHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEE
Confidence 56678899999999999975 4678899998754321 2334578899999999999999999999999999999999
Q ss_pred ecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccccc
Q 042735 502 YLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV 558 (667)
Q Consensus 502 y~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~ 558 (667)
|+++|+|.+++..... ..|.|+||+||+++.++.++|+|||+++.............
T Consensus 83 ~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~ 162 (277)
T cd06641 83 YLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFV 162 (277)
T ss_pred eCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccceecccchhhhcccc
Confidence 9999999887754321 12349999999999999999999999987654333334457
Q ss_pred ccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHH
Q 042735 559 GTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632 (667)
Q Consensus 559 Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (667)
|+..|+|||+ +.++|||||||++|||+||+.|+...... .... .......+..+.. ....+.+
T Consensus 163 ~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~----~~~~-~~~~~~~~~~~~~------~~~~~~~ 231 (277)
T cd06641 163 GTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPM----KVLF-LIPKNNPPTLEGN------YSKPLKE 231 (277)
T ss_pred CCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchH----HHHH-HHhcCCCCCCCcc------cCHHHHH
Confidence 8999999994 45799999999999999999997532210 0000 0000001111111 1234667
Q ss_pred HHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 633 VAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 633 ~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
++.+||+.+|++||++.+++++.++....
T Consensus 232 ~i~~~l~~~p~~Rp~~~~~l~~~~~~~~~ 260 (277)
T cd06641 232 FVEACLNKEPSFRPTAKELLKHKFIVRFA 260 (277)
T ss_pred HHHHHccCChhhCcCHHHHHhCHHHhhhh
Confidence 88899999999999999999998886543
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int |
| >cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=264.47 Aligned_cols=227 Identities=23% Similarity=0.374 Sum_probs=170.9
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|... ++..+|+|.+... .....+.|.+|++++++++||||+++++++..+...++|
T Consensus 5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~----~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 80 (280)
T cd06611 5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIE----SEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWIL 80 (280)
T ss_pred hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeC----CHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEE
Confidence 46778888999999999999874 5788999987532 223446799999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||+++|+|.+++.... ...|.|+||+||+++.++.+||+|||++..........
T Consensus 81 ~e~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~ 160 (280)
T cd06611 81 IEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKR 160 (280)
T ss_pred eeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEECCCCCEEEccCccchhhccccccc
Confidence 99999999988775421 01134999999999999999999999987654433333
Q ss_pred ccccccccccCCCC-----------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 555 SALVGTYRYVAPDY-----------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~-----------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
....||+.|+|||+ +.++|||||||++|||++|+.||...... .... .......+....+.
T Consensus 161 ~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~---~~~~--~~~~~~~~~~~~~~--- 232 (280)
T cd06611 161 DTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPM---RVLL--KILKSEPPTLDQPS--- 232 (280)
T ss_pred ceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHH---HHHH--HHhcCCCCCcCCcc---
Confidence 45678999999993 34799999999999999999998633211 0000 01111111111110
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.....+.+++.+||+.+|++||++.+++++.|+...
T Consensus 233 -~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~ 268 (280)
T cd06611 233 -KWSSSFNDFLKSCLVKDPDDRPTAAELLKHPFVSDQ 268 (280)
T ss_pred -cCCHHHHHHHHHHhccChhhCcCHHHHhcChhhccc
Confidence 112246678889999999999999999999988654
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti |
| >cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=265.05 Aligned_cols=226 Identities=19% Similarity=0.328 Sum_probs=167.1
Q ss_pred CcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|+..+.||+|+||.||+|.... +..+++|.+... .....+.+.+|++++++++||||+++++++..++..++|||
T Consensus 7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~----~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e 82 (282)
T cd06643 7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTK----SEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIE 82 (282)
T ss_pred HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCC----CHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEE
Confidence 3556779999999999998754 667888877532 12345678999999999999999999999999999999999
Q ss_pred ecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 502 YLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 502 y~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
|+++|+|...+.... ...|.||||+||+++.++.+||+|||+++...........
T Consensus 83 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~ 162 (282)
T cd06643 83 FCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDS 162 (282)
T ss_pred ecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEcccccccccccccccccc
Confidence 999999987664311 1113499999999999999999999999765433223344
Q ss_pred ccccccccCCCC-----------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 557 LVGTYRYVAPDY-----------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 557 ~~Gt~~y~aPE~-----------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
..||+.|+|||+ +.++|||||||++|||++|+.|+...... ...... .....+....+. .
T Consensus 163 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~---~~~~~~--~~~~~~~~~~~~----~ 233 (282)
T cd06643 163 FIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPM---RVLLKI--AKSEPPTLAQPS----R 233 (282)
T ss_pred ccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCHH---HHHHHH--hhcCCCCCCCcc----c
Confidence 678999999994 24799999999999999999997532210 000110 011111111111 1
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
....+.+++.+||+.+|++||++++++++.++....
T Consensus 234 ~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~ 269 (282)
T cd06643 234 WSSEFKDFLKKCLEKNVDARWTTTQLLQHPFVTVNS 269 (282)
T ss_pred cCHHHHHHHHHHccCChhhCcCHHHHhcCCCEeccC
Confidence 123567888899999999999999999998876543
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. |
| >cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=271.58 Aligned_cols=228 Identities=21% Similarity=0.317 Sum_probs=167.6
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~lv 499 (667)
+|+..+.||+|+||.||+|+. .++..||+|++...... .....+.+..|++++..+. |++|+++++++.+.+..++|
T Consensus 1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv 79 (323)
T cd05615 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVI-QDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFV 79 (323)
T ss_pred CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhh-hhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEE
Confidence 467788999999999999986 45788999987643211 1123356788999998886 57888899999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
|||+++|+|.+++.... ...|.||||+|||++.++.+||+|||+++..........
T Consensus 80 ~Ey~~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~~~~ 159 (323)
T cd05615 80 MEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTTR 159 (323)
T ss_pred EcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeccccccccCCCCcccc
Confidence 99999999988765421 112349999999999999999999999986443333334
Q ss_pred cccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 556 ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
...||+.|+||| |+.++|||||||++|||+||+.||..... ......... .....+... ...
T Consensus 160 ~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~----~~~~~~i~~--~~~~~p~~~------~~~ 227 (323)
T cd05615 160 TFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDE----DELFQSIME--HNVSYPKSL------SKE 227 (323)
T ss_pred CccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCH----HHHHHHHHh--CCCCCCccC------CHH
Confidence 567999999999 56789999999999999999999863221 111111110 111122111 124
Q ss_pred HHHHHHhccccCCCCCCC-----HHHHHHHHHHhhhhh
Q 042735 630 IMEVAFSCLDVSPESRPT-----MQTITQQLLFSLVYF 662 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RPt-----~~ev~~~l~~~~~~~ 662 (667)
+.+++.+||+.+|.+|++ .+++.++.+|....+
T Consensus 228 ~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~f~~~~~ 265 (323)
T cd05615 228 AVSICKGLMTKHPSKRLGCGPEGERDIREHAFFRRIDW 265 (323)
T ss_pred HHHHHHHHcccCHhhCCCCCCCCHHHHhcCcccCCCCH
Confidence 567888999999999997 478888877765543
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a |
| >KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=271.08 Aligned_cols=216 Identities=24% Similarity=0.442 Sum_probs=164.2
Q ss_pred cceeecccCeEEEEEEeC--CCc--eEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 426 KYCIGSGRHGSVYRAELP--SKE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~~--~~~--~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
.+.||+|.||.|++|.|. +|+ .||||.+....... ....|.+|+.+|.+|+|||+|++||+..+ ...++|+|
T Consensus 115 ~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~---~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~E 190 (1039)
T KOG0199|consen 115 YELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNA---IMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFE 190 (1039)
T ss_pred HHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccch---hHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhh
Confidence 457999999999999874 343 58999987654432 45689999999999999999999999988 67889999
Q ss_pred ecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 502 YLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 502 y~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
.++.|+|.+.|+.... ..|.||.++|+||-..-.+||+|||+.|.+......+
T Consensus 191 LaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Y- 269 (1039)
T KOG0199|consen 191 LAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDMY- 269 (1039)
T ss_pred hcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccceeccCCCCcce-
Confidence 9999999999986211 1134999999999999999999999999887655433
Q ss_pred cccc----cccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchH
Q 042735 556 ALVG----TYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624 (667)
Q Consensus 556 ~~~G----t~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (667)
+..+ ...|.||| |+.++|||+|||++|||+| |+.||-....+ .+-..++ -..+++.+ +.
T Consensus 270 vm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~-----qIL~~iD--~~erLpRP-k~-- 339 (1039)
T KOG0199|consen 270 VMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGI-----QILKNID--AGERLPRP-KY-- 339 (1039)
T ss_pred EecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHH-----HHHHhcc--ccccCCCC-CC--
Confidence 2222 35799999 6789999999999999999 77887533321 1111111 11223322 12
Q ss_pred HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
+...+.+++..||..+|++||||..|.+.+..
T Consensus 340 -csedIY~imk~cWah~paDRptFsair~~~~l 371 (1039)
T KOG0199|consen 340 -CSEDIYQIMKNCWAHNPADRPTFSAIREDLVL 371 (1039)
T ss_pred -ChHHHHHHHHHhccCCccccccHHHHHHhHHH
Confidence 23467889999999999999999999866544
|
|
| >cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=259.72 Aligned_cols=228 Identities=26% Similarity=0.423 Sum_probs=170.4
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||.|+||+||+|.. .++..+|+|++...... ...+.+.+|+++++.++||||+++++.+...+..++|
T Consensus 1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv 77 (267)
T cd06610 1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQ---TSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLV 77 (267)
T ss_pred CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcc---hHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEE
Confidence 4688889999999999999985 45778999987643322 2456789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC---------------------------CcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 500 YEYLKRGSLATNLSNDAA---------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~---------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
|||+++++|.+.+..... ..|.|+||+||++++++.+||+|||++........
T Consensus 78 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~ 157 (267)
T cd06610 78 MPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGD 157 (267)
T ss_pred EeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCcc
Confidence 999999999888754211 11339999999999999999999999987654332
Q ss_pred C----cccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 553 N----WSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 553 ~----~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
. .....|+..|+|||+ +.++|||||||++|||+||+.||........ ....... ..+..+...
T Consensus 158 ~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~----~~~~~~~-~~~~~~~~~- 231 (267)
T cd06610 158 RTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMKV----LMLTLQN-DPPSLETGA- 231 (267)
T ss_pred ccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhhh----HHHHhcC-CCCCcCCcc-
Confidence 2 134578999999993 4579999999999999999999864322111 1111110 111111111
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
........+.+++.+||+.+|++|||++|++++.||
T Consensus 232 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~~p~~ 267 (267)
T cd06610 232 DYKKYSKSFRKMISLCLQKDPSKRPTAEELLKHKFF 267 (267)
T ss_pred ccccccHHHHHHHHHHcCCChhhCcCHHHHhhCCCC
Confidence 001122356788889999999999999999998764
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 |
| >cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-30 Score=262.82 Aligned_cols=229 Identities=22% Similarity=0.361 Sum_probs=162.5
Q ss_pred cCCcCcceeecccCeEEEEEEeC-----------------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCe
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-----------------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-----------------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~ni 483 (667)
++|+..+.||+|+||.||+|+.. ++..+|+|++.... .....+.|.+|++++++++||||
T Consensus 5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~---~~~~~~~~~~E~~~l~~l~~~~i 81 (296)
T cd05095 5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDA---NKNARNDFLKEIKIMSRLKDPNI 81 (296)
T ss_pred hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccC---CHHHHHHHHHHHHHHHhCCCCCc
Confidence 46888899999999999998532 23468999876432 12334679999999999999999
Q ss_pred eEEEEEEEeCCceEEEEEecCCCChHHHhcccc-----------------------------------CCcccccccCCe
Q 042735 484 VKFYGFCSHARHSILIYEYLKRGSLATNLSNDA-----------------------------------AAEELDISSKNV 528 (667)
Q Consensus 484 v~~~g~~~~~~~~~lv~ey~~~g~L~~~l~~~~-----------------------------------~~~~~dlk~~Ni 528 (667)
+++++++...+..++||||+++|+|.+++.... ...|.||||+||
T Consensus 82 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Ni 161 (296)
T cd05095 82 IRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNC 161 (296)
T ss_pred ceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCChheE
Confidence 999999999999999999999999988875421 011339999999
Q ss_pred eecCCCceEEecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh--CCCCCCCCccCC
Q 042735 529 LLDLEHKAHVSDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK--GKHPRGFVSSIL 598 (667)
Q Consensus 529 Lld~~~~~kl~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt--G~~p~~~~~~~~ 598 (667)
+++.++.+||+|||+++....... ......+++.|+||| ++.++|||||||++|||+| |..|+.......
T Consensus 162 li~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~ 241 (296)
T cd05095 162 LVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQ 241 (296)
T ss_pred EEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccChHH
Confidence 999999999999999986543221 112234467899998 4679999999999999998 667764322110
Q ss_pred CChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 599 PSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
..................+.+. . ....+.+++.+||+.+|++||+++||.+.|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~ 295 (296)
T cd05095 242 VIENTGEFFRDQGRQVYLPKPA-L---CPDSLYKLMLSCWRRNAKERPSFQEIHATLL 295 (296)
T ss_pred HHHHHHHHHhhccccccCCCCC-C---CCHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence 0000000000000000111111 1 1135678889999999999999999998875
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit |
| >cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=276.96 Aligned_cols=236 Identities=21% Similarity=0.306 Sum_probs=167.3
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC-----c
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR-----H 495 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~-----~ 495 (667)
+|+..+.||+|+||.||+|.. .+++.||||++..... .....+.+.+|+++++.++||||+++++++...+ .
T Consensus 1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 78 (372)
T cd07853 1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQ--NLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEE 78 (372)
T ss_pred CCcccceeeeCCCEEEEEEEECCCCCEEEEEecccccc--chHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccce
Confidence 578889999999999999986 5688999998864322 2233457889999999999999999999998776 7
Q ss_pred eEEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
.++||||+. ++|.+.+.... ...|.||||+|||++.++.+||+|||+++......
T Consensus 79 ~~lv~e~~~-~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~ 157 (372)
T cd07853 79 IYVVTELMQ-SDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDE 157 (372)
T ss_pred EEEEeeccc-cCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEeccccceeecccCc
Confidence 899999997 46766553221 12245999999999999999999999998654332
Q ss_pred C-CcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCC---------hhhhhh-----hhc
Q 042735 552 S-NWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPS---------PSVINM-----RLD 609 (667)
Q Consensus 552 ~-~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~---------~~~~~~-----~~~ 609 (667)
. ..+...||+.|+||| |+.++|||||||++|||+||+.||......... +..... ...
T Consensus 158 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~ 237 (372)
T cd07853 158 SKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGAR 237 (372)
T ss_pred cccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHHHH
Confidence 2 223456899999999 456899999999999999999998632211000 000000 000
Q ss_pred c-cc-CCCCCCCCC----chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 610 E-ML-DPRLPPPSP----DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 610 ~-~~-~~~~~~~~~----~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
. +. .+..++... .......++.+++.+||+.||++|||+.|++++.|+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~ 294 (372)
T cd07853 238 AHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAHPYLDEG 294 (372)
T ss_pred HHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcCHhhCCC
Confidence 0 00 000000000 000112356788899999999999999999999998763
|
Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription |
| >cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-30 Score=256.86 Aligned_cols=219 Identities=25% Similarity=0.367 Sum_probs=165.2
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|+||.||++... ++..+|+|.+..... ....+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus 1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 77 (255)
T cd08219 1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKS---SSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVM 77 (255)
T ss_pred CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcc---hHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEE
Confidence 4677889999999999999764 578899998754321 233457889999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 501 EYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||+++|+|.+.+.... ...|.||||+||+++.++.++++|||.++.........
T Consensus 78 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~ 157 (255)
T cd08219 78 EYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYA 157 (255)
T ss_pred eeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCcceeeccccccc
Confidence 9999999988764311 01133999999999999999999999998765433333
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
....|++.|+||| ++.++||||||+++|||++|+.||...... .... . .......+.... ...
T Consensus 158 ~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~----~~~~-~---~~~~~~~~~~~~---~~~ 226 (255)
T cd08219 158 CTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWK----NLIL-K---VCQGSYKPLPSH---YSY 226 (255)
T ss_pred ccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCHH----HHHH-H---HhcCCCCCCCcc---cCH
Confidence 4467899999999 467899999999999999999998632210 0110 1 101111111111 112
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHH
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQ 654 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~ 654 (667)
.+.+++.+||+.+|++|||+.||+.+
T Consensus 227 ~~~~li~~~l~~~P~~Rp~~~~il~~ 252 (255)
T cd08219 227 ELRSLIKQMFKRNPRSRPSATTILSR 252 (255)
T ss_pred HHHHHHHHHHhCCcccCCCHHHHhhc
Confidence 45678889999999999999999875
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati |
| >cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=264.87 Aligned_cols=233 Identities=21% Similarity=0.248 Sum_probs=162.8
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|++|.||+|... ++..+|+|++...... ....+.+.+|+.++++++||||+++++++.+++..++||
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 78 (285)
T cd07861 1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEE--EGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIF 78 (285)
T ss_pred CceEeeEecccCceEEEEEEECCCCcEEEEEEecccccc--CCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEE
Confidence 4677889999999999999864 5788999987643221 122356889999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc---------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 501 EYLKRGSLATNLSNDA---------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~---------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
||++ |+|.+++.... ...|.||||+||+++.++.+||+|||+++........
T Consensus 79 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~ 157 (285)
T cd07861 79 EFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRV 157 (285)
T ss_pred ecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccceeecCCCccc
Confidence 9998 67776654311 0113399999999999999999999999865433322
Q ss_pred cccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh----------hhccc--cCC
Q 042735 554 WSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM----------RLDEM--LDP 614 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~----------~~~~~--~~~ 614 (667)
.....|++.|+|||+ +.++|||||||++|||+||+.|+............... ..... ..+
T Consensus 158 ~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (285)
T cd07861 158 YTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKN 237 (285)
T ss_pred ccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHHHHh
Confidence 334567899999993 45799999999999999999997532110000000000 00000 000
Q ss_pred CCCCCCCc-----hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 615 RLPPPSPD-----VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 615 ~~~~~~~~-----~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..+..... ......++.+++.+||+.||++|||+.+|+.+.||
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~~~~~ 285 (285)
T cd07861 238 TFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALNHPYF 285 (285)
T ss_pred hccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhcCCCC
Confidence 00000000 00011245678889999999999999999988664
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 |
| >cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=254.74 Aligned_cols=215 Identities=25% Similarity=0.397 Sum_probs=156.1
Q ss_pred eeecccCeEEEEEEeC---CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 428 CIGSGRHGSVYRAELP---SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 428 ~lg~g~~g~vy~~~~~---~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
.||+|+||.||+|.+. .+..+|+|...... .....+.|.+|+.++++++||||++++|++. .+..++||||++
T Consensus 2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~---~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~ 77 (257)
T cd05115 2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNEN---EKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMAS 77 (257)
T ss_pred ccCCCCcccEEEEEEecCCCceeEEEEEccccc---ChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCC
Confidence 3899999999999763 34468999876432 1233467999999999999999999999885 457899999999
Q ss_pred CCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCc---cc
Q 042735 505 RGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW---SA 556 (667)
Q Consensus 505 ~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~---~~ 556 (667)
+|+|.+.+..... ..|.||||+||+++.++.+||+|||+++......... +.
T Consensus 78 ~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~ 157 (257)
T cd05115 78 GGPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSA 157 (257)
T ss_pred CCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCC
Confidence 9999988753211 1133999999999999999999999998654432211 11
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
..+++.|+||| ++.++|||||||++||+++ |+.||..... .... ..+.....+..+... ..+
T Consensus 158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~----~~~~-~~~~~~~~~~~~~~~------~~~ 226 (257)
T cd05115 158 GKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKG----PEVM-SFIEQGKRLDCPAEC------PPE 226 (257)
T ss_pred CCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCH----HHHH-HHHHCCCCCCCCCCC------CHH
Confidence 23457899999 3568999999999999996 9999753221 1111 111111111112111 235
Q ss_pred HHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 630 IMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
+.+++.+||+.+|++||++.+|.+.+..
T Consensus 227 l~~li~~c~~~~~~~Rp~~~~i~~~l~~ 254 (257)
T cd05115 227 MYALMKDCWIYKWEDRPNFAKVEERMRT 254 (257)
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHhh
Confidence 6678889999999999999999998864
|
Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho |
| >cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-30 Score=264.35 Aligned_cols=237 Identities=18% Similarity=0.258 Sum_probs=167.9
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|...+.||+|+||.||+|... ++..||+|.+...... .....+.+|+.++++++||||+++++++...+..++
T Consensus 5 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~l 81 (301)
T cd07873 5 LETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEE---GAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTL 81 (301)
T ss_pred ccceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEeccccc---CchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEE
Confidence 357888899999999999999764 5788999987643221 123457789999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 499 IYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
||||++ ++|.+.+.... ...|.||||+||+++.++.+||+|||+++........
T Consensus 82 v~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~ 160 (301)
T cd07873 82 VFEYLD-KDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKT 160 (301)
T ss_pred EEeccc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCCc
Confidence 999998 58877664321 1123499999999999999999999999865433333
Q ss_pred cccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC---------CCh--hhhhh--hhccccC
Q 042735 554 WSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL---------PSP--SVINM--RLDEMLD 613 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~---------~~~--~~~~~--~~~~~~~ 613 (667)
.....+++.|+||| ++.++|||||||++|||+||+.||....... ..+ ..... ...+...
T Consensus 161 ~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (301)
T cd07873 161 YSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKS 240 (301)
T ss_pred ccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhccccccc
Confidence 33456789999999 3457999999999999999999986322100 000 00000 0000000
Q ss_pred CCCCCCCCch-----HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 614 PRLPPPSPDV-----QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 614 ~~~~~~~~~~-----~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
...+...... ......+.+++.+|++.||.+|||++|++++.||...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~h~~f~~~ 292 (301)
T cd07873 241 YNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKHPYFHCL 292 (301)
T ss_pred cccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhcCcccccc
Confidence 0011000000 0011245678899999999999999999999998643
|
Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl |
| >cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-30 Score=261.04 Aligned_cols=234 Identities=23% Similarity=0.296 Sum_probs=168.3
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC--CceE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA--RHSI 497 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~--~~~~ 497 (667)
++|+..+.||.|++|.||+|... ++..+|+|.+..... ......+.+|++++++++||||+++++++.+. +..+
T Consensus 1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 77 (287)
T cd06621 1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPN---PDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIG 77 (287)
T ss_pred CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCc---hHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEE
Confidence 36788889999999999999874 578899998764322 13356799999999999999999999998654 4689
Q ss_pred EEEEecCCCChHHHhccc----c------------------------CCcccccccCCeeecCCCceEEecccccccccC
Q 042735 498 LIYEYLKRGSLATNLSND----A------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~----~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~ 549 (667)
+||||+++|+|.+.+... . ...|.|++|+||+++.++.+||+|||++.....
T Consensus 78 lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~ 157 (287)
T cd06621 78 IAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVN 157 (287)
T ss_pred EEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeeccccccccc
Confidence 999999999997765321 0 112339999999999999999999999876543
Q ss_pred CCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 550 DSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
.. .....++..|+||| ++.++||||+||++|||+||+.|+......................+.++......
T Consensus 158 ~~--~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (287)
T cd06621 158 SL--AGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNG 235 (287)
T ss_pred cc--cccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCCC
Confidence 22 12356788999999 46689999999999999999999864422101111111111111111111111100
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
......+.+++.+||+.+|++|||+.||+++.|+..
T Consensus 236 ~~~~~~~~~li~~~l~~~p~~Rpt~~eil~~~~~~~ 271 (287)
T cd06621 236 IKWSEEFKDFIKQCLEKDPTRRPTPWDMLEHPWIKA 271 (287)
T ss_pred CchHHHHHHHHHHHcCCCcccCCCHHHHHhCccccc
Confidence 112335778999999999999999999999998854
|
Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=262.92 Aligned_cols=225 Identities=22% Similarity=0.392 Sum_probs=161.8
Q ss_pred cCCcCcceeecccCeEEEEEEeCC---------------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS---------------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~---------------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~ 485 (667)
++|+..+.||+|+||.||+|+... ...+|+|++..... ......|.+|++++++++||||++
T Consensus 5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~ei~~l~~l~h~~i~~ 81 (295)
T cd05097 5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVT---KTARNDFLKEIKIMSRLKNPNIIR 81 (295)
T ss_pred HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCC---HHHHHHHHHHHHHHHhCCCCCcCe
Confidence 468888899999999999987532 22489998764322 223457999999999999999999
Q ss_pred EEEEEEeCCceEEEEEecCCCChHHHhcccc------------------------------------CCcccccccCCee
Q 042735 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDA------------------------------------AAEELDISSKNVL 529 (667)
Q Consensus 486 ~~g~~~~~~~~~lv~ey~~~g~L~~~l~~~~------------------------------------~~~~~dlk~~NiL 529 (667)
+++++...+..++||||+++|+|.+++.... ...|.||||+||+
T Consensus 82 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil 161 (295)
T cd05097 82 LLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCL 161 (295)
T ss_pred EEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEE
Confidence 9999999999999999999999988774321 0113399999999
Q ss_pred ecCCCceEEecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh--CCCCCCCCccCCC
Q 042735 530 LDLEHKAHVSDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK--GKHPRGFVSSILP 599 (667)
Q Consensus 530 ld~~~~~kl~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt--G~~p~~~~~~~~~ 599 (667)
++.++.+||+|||+++....... ......++..|+||| ++.++|||||||++|||+| |..||.....
T Consensus 162 l~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~--- 238 (295)
T cd05097 162 VGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSD--- 238 (295)
T ss_pred EcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccCh---
Confidence 99999999999999986543221 112234577899999 3678999999999999998 5556543221
Q ss_pred ChhhhhhhhccccCC----CCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 600 SPSVINMRLDEMLDP----RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 600 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
....... .+..+. ......+. ....+.+++.+||+.+|++||+|.+|++.|.
T Consensus 239 -~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~ 294 (295)
T cd05097 239 -EQVIENT-GEFFRNQGRQIYLSQTPL---CPSPVFKLMMRCWSRDIKDRPTFNKIHHFLR 294 (295)
T ss_pred -HHHHHHH-HHhhhhccccccCCCCCC---CCHHHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence 0110000 000000 00000111 1235778999999999999999999998875
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including |
| >cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=255.51 Aligned_cols=219 Identities=23% Similarity=0.407 Sum_probs=164.2
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|...+.||+|+||.||+|...++..+|+|.+..... ..+.|.+|+.++++++||||+++++++. .+..+++|
T Consensus 6 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~ 79 (260)
T cd05067 6 ETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSM-----SPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYIIT 79 (260)
T ss_pred HHceeeeeeccCccceEEeeecCCCceEEEEEecCCCC-----cHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEEEE
Confidence 46788899999999999999988888999998864322 2356889999999999999999999874 46789999
Q ss_pred EecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCC-C
Q 042735 501 EYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-N 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~ 553 (667)
||+++|+|.+.+..... ..|.||||+||+++.++.++|+|||+++....... .
T Consensus 80 e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~ 159 (260)
T cd05067 80 EYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTA 159 (260)
T ss_pred EcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCcceeecCCCCccc
Confidence 99999999987753211 11239999999999999999999999987653221 1
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....++..|+||| ++.++|||||||++||++| |+.||..... ...... .........+.. .
T Consensus 160 ~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~----~~~~~~-~~~~~~~~~~~~------~ 228 (260)
T cd05067 160 REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTN----PEVIQN-LERGYRMPRPDN------C 228 (260)
T ss_pred ccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCCh----HHHHHH-HHcCCCCCCCCC------C
Confidence 22334677899999 3568999999999999999 9999853221 111111 111111111111 1
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
..++.+++.+||+.+|++|||++++...|.
T Consensus 229 ~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~ 258 (260)
T cd05067 229 PEELYELMRLCWKEKPEERPTFEYLRSVLE 258 (260)
T ss_pred CHHHHHHHHHHccCChhhCCCHHHHHHHhh
Confidence 225778888999999999999999998775
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr |
| >cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=256.62 Aligned_cols=222 Identities=23% Similarity=0.401 Sum_probs=161.6
Q ss_pred CcCcceeecccCeEEEEEEeCC----CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc---
Q 042735 423 FDAKYCIGSGRHGSVYRAELPS----KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH--- 495 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~~----~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~--- 495 (667)
|...+.||+|+||.||+|.... +..+|+|++...... ......+.+|++.++.++||||++++|++.....
T Consensus 1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~ 78 (273)
T cd05035 1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHT--YSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQK 78 (273)
T ss_pred CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCC--HHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCcccc
Confidence 4566789999999999997642 367999988653222 2334679999999999999999999999876554
Q ss_pred ---eEEEEEecCCCChHHHhcccc------------------------------CCcccccccCCeeecCCCceEEeccc
Q 042735 496 ---SILIYEYLKRGSLATNLSNDA------------------------------AAEELDISSKNVLLDLEHKAHVSDFG 542 (667)
Q Consensus 496 ---~~lv~ey~~~g~L~~~l~~~~------------------------------~~~~~dlk~~NiLld~~~~~kl~DFG 542 (667)
.++||||+++|+|...+.... ...|.||||+||++++++.+||+|||
T Consensus 79 ~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg 158 (273)
T cd05035 79 IPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFG 158 (273)
T ss_pred CcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECCcc
Confidence 799999999999987763211 01234999999999999999999999
Q ss_pred ccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccC
Q 042735 543 IAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLD 613 (667)
Q Consensus 543 la~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~ 613 (667)
+++........ .....++..|+||| ++.++|||||||++|||++ |..||..... ....... .....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~----~~~~~~~-~~~~~ 233 (273)
T cd05035 159 LSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVEN----HEIYDYL-RHGNR 233 (273)
T ss_pred ceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCH----HHHHHHH-HcCCC
Confidence 99876433221 12234567899999 4568999999999999999 8888753221 1111111 11111
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 614 PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
+..+. ....++.+++.+||+.+|++|||+.|+++.+..
T Consensus 234 ~~~~~------~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~ 271 (273)
T cd05035 234 LKQPE------DCLDELYDLMYSCWRADPKDRPTFTKLREVLEN 271 (273)
T ss_pred CCCCc------CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHh
Confidence 11111 122357788889999999999999999998865
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu |
| >cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=257.87 Aligned_cols=230 Identities=25% Similarity=0.357 Sum_probs=162.3
Q ss_pred cCcceeecccCeEEEEEEe-----CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC--Cce
Q 042735 424 DAKYCIGSGRHGSVYRAEL-----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA--RHS 496 (667)
Q Consensus 424 ~~~~~lg~g~~g~vy~~~~-----~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~--~~~ 496 (667)
...+.||+|+||+||++.+ .++..+|+|.+..... ....+.|.+|++++++++||||+++++++... ...
T Consensus 7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (283)
T cd05080 7 KKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECG---QQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGL 83 (283)
T ss_pred eeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccC---hHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceE
Confidence 6678899999999988653 3567899998765322 12345788999999999999999999998764 357
Q ss_pred EEEEEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
++||||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++........
T Consensus 84 ~lv~e~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~ 163 (283)
T cd05080 84 QLIMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEY 163 (283)
T ss_pred EEEecCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeecccccccCCcchh
Confidence 899999999999887654321 123499999999999999999999999876533221
Q ss_pred ---cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC-----CCh-hhhhhhhccccCCCCCC
Q 042735 554 ---WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL-----PSP-SVINMRLDEMLDPRLPP 618 (667)
Q Consensus 554 ---~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~ 618 (667)
.....++..|+||| ++.++|||||||++|||+||+.|+....... ... ...........+.....
T Consensus 164 ~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
T cd05080 164 YRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRL 243 (283)
T ss_pred hccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCCCC
Confidence 12234567799999 4678999999999999999999975321100 000 00000011111111111
Q ss_pred CCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
+.+. .....+.+++.+||+.+|++|||+++|++.+...
T Consensus 244 ~~~~--~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~ 281 (283)
T cd05080 244 PCPK--NCPQEVYILMKNCWETEAKFRPTFRSLIPILKEM 281 (283)
T ss_pred CCCC--CCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHh
Confidence 1111 1223577889999999999999999999988754
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign |
| >cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=262.31 Aligned_cols=230 Identities=19% Similarity=0.266 Sum_probs=169.1
Q ss_pred CcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|+..+.||+|+||.||+|.. .+++.+|||++...... .....+.+.+|+.++++++|+||+++++.+.+.+..++|||
T Consensus 2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e 80 (285)
T cd05630 2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIK-KRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT 80 (285)
T ss_pred ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhcc-chHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEE
Confidence 56678899999999999976 45789999987643221 12223457889999999999999999999999999999999
Q ss_pred ecCCCChHHHhcccc---C-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 502 YLKRGSLATNLSNDA---A-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 502 y~~~g~L~~~l~~~~---~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
|+++|+|.+.+.... . ..|.||||+||+++.++.++|+|||++....... ...
T Consensus 81 ~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~-~~~ 159 (285)
T cd05630 81 LMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQ-TIK 159 (285)
T ss_pred ecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccceeecCCCc-ccc
Confidence 999999988764211 0 1133999999999999999999999997654322 223
Q ss_pred cccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 556 ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
...||+.|+||| ++.++|||||||++|||++|+.||......... ....... .......+... ...
T Consensus 160 ~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~-~~~~~~~-~~~~~~~~~~~------~~~ 231 (285)
T cd05630 160 GRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKR-EEVERLV-KEVQEEYSEKF------SPD 231 (285)
T ss_pred CCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchH-HHHHhhh-hhhhhhcCccC------CHH
Confidence 357999999999 467899999999999999999998632211000 0000000 00011111111 124
Q ss_pred HHHHHHhccccCCCCCCC-----HHHHHHHHHHhhhhh
Q 042735 630 IMEVAFSCLDVSPESRPT-----MQTITQQLLFSLVYF 662 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RPt-----~~ev~~~l~~~~~~~ 662 (667)
+.+++.+||+.+|++||| ++|++++.|+....+
T Consensus 232 ~~~li~~~l~~~p~~R~s~~~~~~~~~~~h~~~~~~~~ 269 (285)
T cd05630 232 ARSLCKMLLCKDPKERLGCQGGGAREVKEHPLFKQINF 269 (285)
T ss_pred HHHHHHHHhhcCHHHccCCCCCchHHHHcChhhhccCH
Confidence 567888999999999999 999999999976544
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as |
| >cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=259.56 Aligned_cols=226 Identities=27% Similarity=0.425 Sum_probs=171.2
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC---CCCeeEEEEEEEeCCceE
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR---HRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~---H~niv~~~g~~~~~~~~~ 497 (667)
.|+..+.||+|+||.||+|.. .++..+|+|.+..... ....+++.+|++++++++ |||++++++++.+....+
T Consensus 2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~---~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~ 78 (277)
T cd06917 2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTP---DDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLW 78 (277)
T ss_pred hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCC---chhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEE
Confidence 366678899999999999986 5688899998764322 123456889999999997 999999999999999999
Q ss_pred EEEEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 498 LIYEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
+||||+++++|.+.+..... ..|.||+|+||+++.++.+||+|||++..........
T Consensus 79 lv~e~~~~~~L~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~ 158 (277)
T cd06917 79 IIMEYAEGGSVRTLMKAGPIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKR 158 (277)
T ss_pred EEEecCCCCcHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCcccc
Confidence 99999999999887754321 1134999999999999999999999998766544334
Q ss_pred ccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 555 SALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
....|+..|+|||+ +.++|||||||++|||++|+.||........ .. .......+.++.. ...
T Consensus 159 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~----~~-~~~~~~~~~~~~~-----~~~ 228 (277)
T cd06917 159 STFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFRA----MM-LIPKSKPPRLEDN-----GYS 228 (277)
T ss_pred ccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChhhh----hh-ccccCCCCCCCcc-----cCC
Confidence 45679999999993 5689999999999999999999863321100 00 0001011111111 122
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..+.+++.+||+.+|++||++.|++++.|+...
T Consensus 229 ~~~~~~i~~~l~~~p~~R~~~~~il~~~~~~~~ 261 (277)
T cd06917 229 KLLREFVAACLDEEPKERLSAEELLKSKWIKAH 261 (277)
T ss_pred HHHHHHHHHHcCCCcccCcCHHHHhhChHhhcc
Confidence 357788899999999999999999999888643
|
Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent |
| >cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-30 Score=263.05 Aligned_cols=224 Identities=24% Similarity=0.355 Sum_probs=162.9
Q ss_pred HcCCcCcceeecccCeEEEEEEeCC-Cc--eEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCc
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPS-KE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARH 495 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~-~~--~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~ 495 (667)
+++|+..+.||+|+||.||+|.... +. .+|+|++..... ....+.|.+|++++.++ +||||+++++++.+.+.
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~ 82 (303)
T cd05088 6 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS---KDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGY 82 (303)
T ss_pred hhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCC---HHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCC
Confidence 4678888999999999999998643 43 357777653221 23345788999999999 89999999999999999
Q ss_pred eEEEEEecCCCChHHHhcccc----------------------------------------CCcccccccCCeeecCCCc
Q 042735 496 SILIYEYLKRGSLATNLSNDA----------------------------------------AAEELDISSKNVLLDLEHK 535 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~----------------------------------------~~~~~dlk~~NiLld~~~~ 535 (667)
.++||||+++|+|.+++.... ...|.||||+|||++.++.
T Consensus 83 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~~ 162 (303)
T cd05088 83 LYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYV 162 (303)
T ss_pred ceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEecCCCc
Confidence 999999999999998875321 0113399999999999999
Q ss_pred eEEecccccccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhh
Q 042735 536 AHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRL 608 (667)
Q Consensus 536 ~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~ 608 (667)
+||+|||+++....... .....++..|+||| ++.++|||||||++|||+| |..||..... ...... .
T Consensus 163 ~kl~dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~----~~~~~~-~ 236 (303)
T cd05088 163 AKIADFGLSRGQEVYVK-KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC----AELYEK-L 236 (303)
T ss_pred EEeCccccCcccchhhh-cccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCCh----HHHHHH-H
Confidence 99999999974321111 11223467899999 4678999999999999998 9999753221 111111 1
Q ss_pred ccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 609 DEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
........+.. ....+.+++.+||+.+|++||+++++++++...
T Consensus 237 ~~~~~~~~~~~------~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~ 280 (303)
T cd05088 237 PQGYRLEKPLN------CDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 280 (303)
T ss_pred hcCCcCCCCCC------CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 01001111111 122467888999999999999999999987654
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A |
| >cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9 | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-30 Score=255.88 Aligned_cols=222 Identities=21% Similarity=0.339 Sum_probs=169.0
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|+||.||.++. .++..+++|++...... ....+.+.+|++++++++||||+++++++.+.+..+++|
T Consensus 1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~--~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~ 78 (256)
T cd08221 1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLS--EKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEM 78 (256)
T ss_pred CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccc--hhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEE
Confidence 467788999999999999975 55788999987643222 234567889999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 501 EYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||+++|+|.+.+..... ..|.||||+||+++.++.+||+|||+++.........
T Consensus 79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~ 158 (256)
T cd08221 79 EYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMA 158 (256)
T ss_pred EecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEcccccccc
Confidence 99999999988754310 1133999999999999999999999998765444334
Q ss_pred ccccccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
....|++.|+|||+ +.++||||||+++|||++|+.|+..... .... ..+.....++... ....
T Consensus 159 ~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~----~~~~----~~~~~~~~~~~~~---~~~~ 227 (256)
T cd08221 159 ETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNP----LNLV----VKIVQGNYTPVVS---VYSS 227 (256)
T ss_pred cccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCH----HHHH----HHHHcCCCCCCcc---ccCH
Confidence 45678999999993 5689999999999999999999753211 1111 1111111111111 1123
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
.+.+++.+||..+|++||++.|++++++
T Consensus 228 ~~~~~i~~~l~~~p~~R~s~~~ll~~~~ 255 (256)
T cd08221 228 ELISLVHSLLQQDPEKRPTADEVLDQPL 255 (256)
T ss_pred HHHHHHHHHcccCcccCCCHHHHhhCcC
Confidence 4667888999999999999999998765
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa |
| >cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=257.17 Aligned_cols=223 Identities=24% Similarity=0.457 Sum_probs=164.5
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-C---ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-K---EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-~---~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
++|+..+.||+|+||.||+|.... + ..+|+|++..... ....+.+.+|++++++++||||+++++++.+.+..
T Consensus 5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~ 81 (268)
T cd05063 5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYT---EKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPA 81 (268)
T ss_pred HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCC---HHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCc
Confidence 578888999999999999998643 3 2689998764321 23345789999999999999999999999999999
Q ss_pred EEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
++||||+++|+|.+++..... ..|.|+||+||+++.++.+|++|||+++......
T Consensus 82 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~ 161 (268)
T cd05063 82 MIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDP 161 (268)
T ss_pred EEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccceeccccc
Confidence 999999999999888754211 1133999999999999999999999998664322
Q ss_pred CCc-c--cccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 552 SNW-S--ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 552 ~~~-~--~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
... + ....++.|+||| ++.++|||||||++|||+| |+.||..... ...... +... ...+.. .
T Consensus 162 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~----~~~~~~-i~~~--~~~~~~-~ 233 (268)
T cd05063 162 EGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSN----HEVMKA-INDG--FRLPAP-M 233 (268)
T ss_pred ccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCH----HHHHHH-HhcC--CCCCCC-C
Confidence 111 1 122345799999 3568999999999999998 9999753221 111111 1110 011111 1
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.....+.+++.+||+.+|++||++++|++.+..
T Consensus 234 ---~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~ 266 (268)
T cd05063 234 ---DCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDK 266 (268)
T ss_pred ---CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHh
Confidence 122356789999999999999999999998864
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored |
| >cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=261.47 Aligned_cols=225 Identities=23% Similarity=0.346 Sum_probs=164.4
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|.. .++..+|+|.+.... ......+.+|+.+++.++||||+++++++...+..++|
T Consensus 9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~----~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv 84 (267)
T cd06645 9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEP----GEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWIC 84 (267)
T ss_pred HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCc----hhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEE
Confidence 4566778899999999999976 457889999875432 12234578899999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
|||+++|+|.+.+.... ...|.||||+||+++.++.+||+|||++...........
T Consensus 85 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~ 164 (267)
T cd06645 85 MEFCGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRK 164 (267)
T ss_pred EeccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcceeeeEccCcccccc
Confidence 99999999988764321 112449999999999999999999999976543332234
Q ss_pred cccccccccCCCC---------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 556 ALVGTYRYVAPDY---------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 556 ~~~Gt~~y~aPE~---------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
...||+.|+|||+ +.++|||||||++|||++|+.|+...... .............+.... ... .
T Consensus 165 ~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~---~ 237 (267)
T cd06645 165 SFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPM---RALFLMTKSNFQPPKLKD-KMK---W 237 (267)
T ss_pred cccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccch---hhHHhhhccCCCCCcccc-cCC---C
Confidence 4579999999994 34799999999999999999997422210 000000000000111110 001 1
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
...+.+++.+||+.+|++|||+++|+++.|
T Consensus 238 ~~~~~~li~~~l~~~P~~R~~~~~ll~~~~ 267 (267)
T cd06645 238 SNSFHHFVKMALTKNPKKRPTAEKLLQHPF 267 (267)
T ss_pred CHHHHHHHHHHccCCchhCcCHHHHhcCCC
Confidence 124567888999999999999999988643
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-30 Score=267.29 Aligned_cols=225 Identities=24% Similarity=0.411 Sum_probs=163.0
Q ss_pred cCCcCcceeecccCeEEEEEEe------CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHA 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~------~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~ 493 (667)
++|+..+.||+|+||.||+|.. .+++.||||++..... ......+.+|+.++.++ +|||||++++++...
T Consensus 7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~ 83 (343)
T cd05103 7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLLGACTKP 83 (343)
T ss_pred hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCC---hHHHHHHHHHHHHHHhccCCccHhhhcceeecC
Confidence 4688899999999999999963 3467899999864322 22345688999999999 589999999988654
Q ss_pred -CceEEEEEecCCCChHHHhcccc--------------------------------------------------------
Q 042735 494 -RHSILIYEYLKRGSLATNLSNDA-------------------------------------------------------- 516 (667)
Q Consensus 494 -~~~~lv~ey~~~g~L~~~l~~~~-------------------------------------------------------- 516 (667)
...++||||+++|+|.+++....
T Consensus 84 ~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (343)
T cd05103 84 GGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEE 163 (343)
T ss_pred CCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchh
Confidence 46789999999999988774311
Q ss_pred -----------------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC--Ccccccc
Q 042735 517 -----------------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS--NWSALVG 559 (667)
Q Consensus 517 -----------------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~--~~~~~~G 559 (667)
...|.||||+||+++.++.+||+|||+++....... ......+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~ 243 (343)
T cd05103 164 EEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARL 243 (343)
T ss_pred hhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCC
Confidence 011339999999999999999999999986533221 1122345
Q ss_pred cccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHH
Q 042735 560 TYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632 (667)
Q Consensus 560 t~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (667)
++.|+||| |+.++|||||||++|||++ |..||..... ..... ...........+... ...+.+
T Consensus 244 ~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~---~~~~~-~~~~~~~~~~~~~~~------~~~~~~ 313 (343)
T cd05103 244 PLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI---DEEFC-RRLKEGTRMRAPDYT------TPEMYQ 313 (343)
T ss_pred CcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccc---cHHHH-HHHhccCCCCCCCCC------CHHHHH
Confidence 67899999 4678999999999999997 8888753221 01111 111111111111111 124678
Q ss_pred HHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 633 VAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 633 ~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
++.+||+.+|++|||+.||+++|...
T Consensus 314 ~~~~cl~~~p~~Rps~~eil~~l~~~ 339 (343)
T cd05103 314 TMLDCWHGEPSQRPTFSELVEHLGNL 339 (343)
T ss_pred HHHHHccCChhhCcCHHHHHHHHHHH
Confidence 88899999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp |
| >cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-30 Score=270.18 Aligned_cols=236 Identities=21% Similarity=0.318 Sum_probs=165.9
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC----
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR---- 494 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~---- 494 (667)
.++|...+.||+|+||.||+|.. .++..+|||++...... ....+.+.+|+.++++++||||+++++++....
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 97 (359)
T cd07876 20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQN--QTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEE 97 (359)
T ss_pred hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccc--hhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccc
Confidence 47899999999999999999976 45788999998654322 233456889999999999999999999986543
Q ss_pred --ceEEEEEecCCCChHHHhccc----------------------cCCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 495 --HSILIYEYLKRGSLATNLSND----------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 495 --~~~lv~ey~~~g~L~~~l~~~----------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
..++||||++++ +.+.+... ....|.||||+||+++.++.+||+|||+++.....
T Consensus 98 ~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~ 176 (359)
T cd07876 98 FQDVYLVMELMDAN-LCQVIHMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTN 176 (359)
T ss_pred cceeEEEEeCCCcC-HHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEecCCCccccccC
Confidence 479999999865 43332211 12235599999999999999999999999864322
Q ss_pred CCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC-----------CChhhhhh---hhcc
Q 042735 551 SSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL-----------PSPSVINM---RLDE 610 (667)
Q Consensus 551 ~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~-----------~~~~~~~~---~~~~ 610 (667)
.......||+.|+||| |+.++|||||||++|||+||+.||....... +.....+. ....
T Consensus 177 -~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (359)
T cd07876 177 -FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRN 255 (359)
T ss_pred -ccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 2234467899999999 5678999999999999999999986332100 00000000 0000
Q ss_pred cc--CCCCCC--------------CCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 611 ML--DPRLPP--------------PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 611 ~~--~~~~~~--------------~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.. .+..+. ...........+.+++.+||+.||++|||+.|++++.|+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~ 320 (359)
T cd07876 256 YVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRHPYITV 320 (359)
T ss_pred HHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcCchhhh
Confidence 00 000000 00000001234678889999999999999999999998864
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >PTZ00036 glycogen synthase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=277.32 Aligned_cols=230 Identities=20% Similarity=0.272 Sum_probs=158.8
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC------
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA------ 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~------ 493 (667)
.+|...+.||+|+||.||+|.. ..++.||||++.... ....+|+.++++++|||||++++++...
T Consensus 66 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~--------~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~ 137 (440)
T PTZ00036 66 KSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP--------QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNE 137 (440)
T ss_pred CeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc--------chHHHHHHHHHhcCCCCCcceeeeEeecccccCC
Confidence 5688899999999999999986 457889999875321 1245799999999999999999987532
Q ss_pred --CceEEEEEecCCCChHHHhcc----c------------------------cCCcccccccCCeeecCCC-ceEEeccc
Q 042735 494 --RHSILIYEYLKRGSLATNLSN----D------------------------AAAEELDISSKNVLLDLEH-KAHVSDFG 542 (667)
Q Consensus 494 --~~~~lv~ey~~~g~L~~~l~~----~------------------------~~~~~~dlk~~NiLld~~~-~~kl~DFG 542 (667)
...++||||+++ ++.+.+.. . ....|.||||+|||++.++ .+||+|||
T Consensus 138 ~~~~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFG 216 (440)
T PTZ00036 138 KNIFLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFG 216 (440)
T ss_pred CceEEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCceeeeccc
Confidence 246789999996 55444321 0 1122459999999999664 79999999
Q ss_pred ccccccCCCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh---------h
Q 042735 543 IAKFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN---------M 606 (667)
Q Consensus 543 la~~~~~~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~---------~ 606 (667)
+|+....... .....||+.|+||| |+.++|||||||++|||+||++||.............. .
T Consensus 217 la~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~ 295 (440)
T PTZ00036 217 SAKNLLAGQR-SVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQL 295 (440)
T ss_pred cchhccCCCC-cccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHH
Confidence 9987654322 23457899999999 45689999999999999999999863221100000000 0
Q ss_pred --hhccccCCCCCCCCCc-hH-----HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 607 --RLDEMLDPRLPPPSPD-VQ-----GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 607 --~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
......+...+...+. .. ....++.+++.+||+.+|.+|||+.|++++.||...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~~ 357 (440)
T PTZ00036 296 KEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALADPFFDDL 357 (440)
T ss_pred HHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCChhHHhh
Confidence 0000000011110000 00 012356788999999999999999999999998643
|
|
| >cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-30 Score=259.95 Aligned_cols=222 Identities=21% Similarity=0.338 Sum_probs=162.8
Q ss_pred cCCcCcceeecccCeEEEEEEeCC------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
++|...+.||+|+||.||+|...+ +..+|+|++..... ....+.|.+|+.++++++|||||++++++.+..
T Consensus 5 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~ 81 (283)
T cd05091 5 STVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAE---GPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQ 81 (283)
T ss_pred HHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCC---HHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCC
Confidence 345667789999999999997532 46799999864321 223456889999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhcccc----------------------------------------CCcccccccCCeeecCCC
Q 042735 495 HSILIYEYLKRGSLATNLSNDA----------------------------------------AAEELDISSKNVLLDLEH 534 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~----------------------------------------~~~~~dlk~~NiLld~~~ 534 (667)
..++++||+++++|.+++.... ...|.||||+||++++++
T Consensus 82 ~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~~~ 161 (283)
T cd05091 82 PLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKL 161 (283)
T ss_pred ceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEecCCC
Confidence 9999999999999988763210 011339999999999999
Q ss_pred ceEEecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhh
Q 042735 535 KAHVSDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVIN 605 (667)
Q Consensus 535 ~~kl~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~ 605 (667)
.+||+|||+++....... ......+++.|+||| ++.++|||||||++|||+| |..|+..... ...
T Consensus 162 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~----~~~-- 235 (283)
T cd05091 162 NVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN----QDV-- 235 (283)
T ss_pred ceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCH----HHH--
Confidence 999999999986543221 122345678999999 4668999999999999998 7778653211 111
Q ss_pred hhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 606 MRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
...+.+....+.... ....+.+++.+||+.+|++||+++||++.|.
T Consensus 236 --~~~i~~~~~~~~~~~---~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~ 281 (283)
T cd05091 236 --IEMIRNRQVLPCPDD---CPAWVYTLMLECWNEFPSRRPRFKDIHSRLR 281 (283)
T ss_pred --HHHHHcCCcCCCCCC---CCHHHHHHHHHHhCCCcccCCCHHHHHHHhh
Confidence 111112111111111 1224667888999999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=257.74 Aligned_cols=222 Identities=21% Similarity=0.375 Sum_probs=165.8
Q ss_pred cCCcCcceeecccCeEEEEEEeCC------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
++|...+.||+|+||.||+|.... +..+|+|.+.... .......|.+|+.++.+++||||++++|++....
T Consensus 6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~---~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~ 82 (277)
T cd05032 6 EKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENA---SMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQ 82 (277)
T ss_pred HHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCcc---CHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCC
Confidence 577888999999999999997642 3579999875432 2233457899999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhccccC----------------------------------CcccccccCCeeecCCCceEEec
Q 042735 495 HSILIYEYLKRGSLATNLSNDAA----------------------------------AEELDISSKNVLLDLEHKAHVSD 540 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~~----------------------------------~~~~dlk~~NiLld~~~~~kl~D 540 (667)
..++||||+++|+|.+++..... ..|.||||+||+++.++.+||+|
T Consensus 83 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~~kl~d 162 (277)
T cd05032 83 PTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGD 162 (277)
T ss_pred CcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCCEEECC
Confidence 99999999999999988743110 11239999999999999999999
Q ss_pred ccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccc
Q 042735 541 FGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEM 611 (667)
Q Consensus 541 FGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~ 611 (667)
||+++....... ......+|..|+||| ++.++|||||||++||++| |+.||..... ....... ...
T Consensus 163 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~----~~~~~~~-~~~ 237 (277)
T cd05032 163 FGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSN----EEVLKFV-IDG 237 (277)
T ss_pred cccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCH----HHHHHHH-hcC
Confidence 999986543321 123345788999999 4678999999999999998 8888753221 1111111 110
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 612 LDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
..+..+... ...+.+++.+||+.+|++|||+.|+++.+.
T Consensus 238 ~~~~~~~~~------~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~ 276 (277)
T cd05032 238 GHLDLPENC------PDKLLELMRMCWQYNPKMRPTFLEIVSSLK 276 (277)
T ss_pred CCCCCCCCC------CHHHHHHHHHHcCCChhhCCCHHHHHHHhc
Confidence 011112111 235678889999999999999999998864
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological |
| >cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=255.47 Aligned_cols=221 Identities=23% Similarity=0.405 Sum_probs=158.5
Q ss_pred cCcceeecccCeEEEEEEeCCCc---eEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC------C
Q 042735 424 DAKYCIGSGRHGSVYRAELPSKE---FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA------R 494 (667)
Q Consensus 424 ~~~~~lg~g~~g~vy~~~~~~~~---~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~------~ 494 (667)
...+.||+|+||.||+|....+. .+|+|.++..... ....+.|.+|++++++++||||+++++++... .
T Consensus 2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 79 (272)
T cd05075 2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICT--RSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYP 79 (272)
T ss_pred ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCC--HHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCC
Confidence 45678999999999999875533 5899987653322 23356789999999999999999999988542 2
Q ss_pred ceEEEEEecCCCChHHHhcccc------------------------------CCcccccccCCeeecCCCceEEeccccc
Q 042735 495 HSILIYEYLKRGSLATNLSNDA------------------------------AAEELDISSKNVLLDLEHKAHVSDFGIA 544 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~------------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla 544 (667)
..+++|||+++|+|.+++.... ...|.||||+|||+++++.+||+|||++
T Consensus 80 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~ 159 (272)
T cd05075 80 SPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLS 159 (272)
T ss_pred CcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCCCcc
Confidence 4689999999999987763211 0113499999999999999999999999
Q ss_pred ccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCC
Q 042735 545 KFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPR 615 (667)
Q Consensus 545 ~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (667)
+........ .....+++.|+||| ++.++|||||||++|||++ |+.||..... ...... .....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~----~~~~~~----~~~~~ 231 (272)
T cd05075 160 KKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVEN----SEIYDY----LRQGN 231 (272)
T ss_pred cccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCH----HHHHHH----HHcCC
Confidence 876433211 12234667899999 3668999999999999999 7888753211 111111 11111
Q ss_pred CCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 616 LPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.....+. ....+.+++.+||+.+|++|||++++++++..
T Consensus 232 ~~~~~~~---~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~ 270 (272)
T cd05075 232 RLKQPPD---CLDGLYSLMSSCWLLNPKDRPSFETLRCELEK 270 (272)
T ss_pred CCCCCCC---CCHHHHHHHHHHcCCCcccCcCHHHHHHHHHh
Confidence 1111111 12246788899999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor |
| >cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=255.22 Aligned_cols=223 Identities=24% Similarity=0.435 Sum_probs=164.3
Q ss_pred cCCcCcceeecccCeEEEEEEeC-C---CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-S---KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~---~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
.+|...+.||+|+||.||+|... + +..+|+|.+..... ....+.|.+|+.++.+++||||+++++++.+.+..
T Consensus 4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~ 80 (267)
T cd05066 4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYT---EKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPV 80 (267)
T ss_pred HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCC---HHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCcc
Confidence 46778899999999999999753 2 33689998764322 23346789999999999999999999999999999
Q ss_pred EEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
++||||+++|+|.+++..... ..|.||||+||+++.++.+|++|||+++......
T Consensus 81 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~ 160 (267)
T cd05066 81 MIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP 160 (267)
T ss_pred EEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCccccccccc
Confidence 999999999999988754311 1133999999999999999999999998765432
Q ss_pred CCc---ccccccccccCCCC------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 552 SNW---SALVGTYRYVAPDY------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 552 ~~~---~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
... ....++..|+|||+ +.++|||||||++||+++ |+.||..... ..... ...... ..+.+ .
T Consensus 161 ~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~----~~~~~-~~~~~~--~~~~~-~ 232 (267)
T cd05066 161 EAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSN----QDVIK-AIEEGY--RLPAP-M 232 (267)
T ss_pred ceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCH----HHHHH-HHhCCC--cCCCC-C
Confidence 211 11234568999993 568999999999999887 9999753221 01111 111111 11111 1
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.....+.+++.+||+.+|++||+|.++++.+..
T Consensus 233 ---~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 265 (267)
T cd05066 233 ---DCPAALHQLMLDCWQKDRNERPKFEQIVSILDK 265 (267)
T ss_pred ---CCCHHHHHHHHHHcccCchhCCCHHHHHHHHHh
Confidence 112346688889999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul |
| >cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=262.11 Aligned_cols=227 Identities=22% Similarity=0.337 Sum_probs=170.0
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|... .+..+|+|.+..... ......+.+|++++.+++||||+++++++...+..++|
T Consensus 1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~---~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv 77 (286)
T cd06622 1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELD---ESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMC 77 (286)
T ss_pred ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccC---HHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEE
Confidence 35777889999999999999875 688899998764321 22345789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc----------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 500 YEYLKRGSLATNLSNDA----------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~----------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
|||+++++|..++.... ...|.||||+||+++.++.+||+|||+++.....
T Consensus 78 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~- 156 (286)
T cd06622 78 MEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVAS- 156 (286)
T ss_pred EeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCCCEEEeecCCcccccCC-
Confidence 99999999987765420 1123499999999999999999999999765322
Q ss_pred CCcccccccccccCCCC------------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCC
Q 042735 552 SNWSALVGTYRYVAPDY------------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE~------------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (667)
......|++.|+|||+ +.++|||||||++|||+||+.||..... ..... ......+...+..
T Consensus 157 -~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~----~~~~~-~~~~~~~~~~~~~ 230 (286)
T cd06622 157 -LAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETY----ANIFA-QLSAIVDGDPPTL 230 (286)
T ss_pred -ccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcch----hhHHH-HHHHHhhcCCCCC
Confidence 2234568899999993 4579999999999999999999853221 11111 1111111111111
Q ss_pred CCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 620 ~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.+. ....+.+++.+||+.+|++||++++++.+.|+...
T Consensus 231 ~~~---~~~~~~~li~~~l~~~p~~Rp~~~~l~~~~~~~~~ 268 (286)
T cd06622 231 PSG---YSDDAQDFVAKCLNKIPNRRPTYAQLLEHPWLVKY 268 (286)
T ss_pred Ccc---cCHHHHHHHHHHcccCcccCCCHHHHhcChhhhhc
Confidence 111 12345678889999999999999999999987654
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=262.06 Aligned_cols=231 Identities=23% Similarity=0.387 Sum_probs=169.4
Q ss_pred CHHHHHHHHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEE
Q 042735 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGF 489 (667)
Q Consensus 412 ~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~ 489 (667)
++.++..+.+.|+..+.||+|+||.||+|.. ..+..+|+|.+... .....++..|+.++.++ +||||++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~-----~~~~~~~~~e~~~l~~~~~h~~i~~~~~~ 81 (282)
T cd06636 7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVT-----EDEEEEIKLEINMLKKYSHHRNIATYYGA 81 (282)
T ss_pred hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecC-----hHHHHHHHHHHHHHHHhcCCCcEEEEeee
Confidence 4455556678899999999999999999986 45788999987532 12335688899999998 69999999999
Q ss_pred EEe------CCceEEEEEecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceE
Q 042735 490 CSH------ARHSILIYEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAH 537 (667)
Q Consensus 490 ~~~------~~~~~lv~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~k 537 (667)
+.. .+..+++|||+++|+|.+.+..... ..|.|+||+||+++.++.+|
T Consensus 82 ~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~ 161 (282)
T cd06636 82 FIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVK 161 (282)
T ss_pred hhcccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEE
Confidence 853 4578999999999999887753210 11239999999999999999
Q ss_pred EecccccccccCCCCCcccccccccccCCCC-----------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh
Q 042735 538 VSDFGIAKFLKPDSSNWSALVGTYRYVAPDY-----------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM 606 (667)
Q Consensus 538 l~DFGla~~~~~~~~~~~~~~Gt~~y~aPE~-----------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~ 606 (667)
|+|||+++.............|++.|+|||. +.++|||||||++|||+||+.||...... ....
T Consensus 162 l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~---~~~~-- 236 (282)
T cd06636 162 LVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPM---RALF-- 236 (282)
T ss_pred EeeCcchhhhhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHH---hhhh--
Confidence 9999999865433333345679999999993 34799999999999999999997532210 0000
Q ss_pred hhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 607 RLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.......+.... ......+.+++.+||+.+|.+|||+.|++++.|+
T Consensus 237 ~~~~~~~~~~~~-----~~~~~~~~~li~~cl~~~p~~Rp~~~ell~~~~~ 282 (282)
T cd06636 237 LIPRNPPPKLKS-----KKWSKKFIDFIEGCLVKNYLSRPSTEQLLKHPFI 282 (282)
T ss_pred hHhhCCCCCCcc-----cccCHHHHHHHHHHhCCChhhCcCHHHHhcCCCC
Confidence 000000111110 1122357788889999999999999999987664
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea |
| >cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=259.46 Aligned_cols=225 Identities=23% Similarity=0.390 Sum_probs=165.7
Q ss_pred HcCCcCcceeecccCeEEEEEEeCC------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEe
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPS------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSH 492 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~ 492 (667)
.++|+..+.||+|+||.||+|.... ...+|+|.+..... ......+.+|++++.++ +||||+++++++..
T Consensus 11 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~ 87 (293)
T cd05053 11 RDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDAT---EKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQ 87 (293)
T ss_pred HhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCC---HHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcC
Confidence 3567888899999999999997632 35789998764322 22345688999999999 79999999999999
Q ss_pred CCceEEEEEecCCCChHHHhcccc----------------------------------------CCcccccccCCeeecC
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDA----------------------------------------AAEELDISSKNVLLDL 532 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~----------------------------------------~~~~~dlk~~NiLld~ 532 (667)
.+..+++|||+++|+|.+++.... ...|.||||+||+++.
T Consensus 88 ~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~~~ 167 (293)
T cd05053 88 EGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVTE 167 (293)
T ss_pred CCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEEEcC
Confidence 999999999999999998875311 0113399999999999
Q ss_pred CCceEEecccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhh
Q 042735 533 EHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSV 603 (667)
Q Consensus 533 ~~~~kl~DFGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~ 603 (667)
++.+||+|||+++........ .....++..|+||| ++.++|||||||++|||++ |..|+..... ...
T Consensus 168 ~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~----~~~ 243 (293)
T cd05053 168 DHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPV----EEL 243 (293)
T ss_pred CCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCH----HHH
Confidence 999999999999876543211 12233567899999 4668999999999999998 8888753211 111
Q ss_pred hhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 604 INMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.... .....+..+. .....+.+++.+||+.+|++|||+.|+++.+...
T Consensus 244 ~~~~-~~~~~~~~~~------~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~ 291 (293)
T cd05053 244 FKLL-KEGYRMEKPQ------NCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRM 291 (293)
T ss_pred HHHH-HcCCcCCCCC------CCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHh
Confidence 1111 1111111111 1123567889999999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, |
| >cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=254.69 Aligned_cols=220 Identities=24% Similarity=0.444 Sum_probs=163.4
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|+..+.||+|+||.||+|...++..+|+|.+..... ..+.|.+|+.++++++|||++++++++. ....+++|
T Consensus 6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-----~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~ 79 (260)
T cd05070 6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-----SPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVT 79 (260)
T ss_pred HHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC-----CHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEE
Confidence 46778889999999999999988888899998865322 2346899999999999999999999885 45688999
Q ss_pred EecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC-
Q 042735 501 EYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN- 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~- 553 (667)
||+++|+|.+.+..... ..|.||||+||+++.++.+||+|||+++........
T Consensus 80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~ 159 (260)
T cd05070 80 EYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTA 159 (260)
T ss_pred EecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCceeeeeccCccccc
Confidence 99999999988753210 113499999999999999999999999875433211
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....++..|+||| ++.++|||||||++|||++ |+.||..... ..... .+ ......+.+. ..
T Consensus 160 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~----~~~~~----~~-~~~~~~~~~~--~~ 228 (260)
T cd05070 160 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNN----REVLE----QV-ERGYRMPCPQ--DC 228 (260)
T ss_pred ccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCH----HHHHH----HH-HcCCCCCCCC--cC
Confidence 11234567899999 3568999999999999999 8888753221 11111 11 1111111111 12
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
...+.+++.+||+.+|++|||++++.+.|..
T Consensus 229 ~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~ 259 (260)
T cd05070 229 PISLHELMLQCWKKDPEERPTFEYLQSFLED 259 (260)
T ss_pred CHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 2357788999999999999999999987753
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r |
| >cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=259.50 Aligned_cols=228 Identities=23% Similarity=0.358 Sum_probs=170.3
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|+||.||+|... +++.+|+|.+..... ....+.+.+|++++++++||||+++++++...+..++|+
T Consensus 2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~---~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ 78 (265)
T cd06605 2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEIN---EAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICM 78 (265)
T ss_pred cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccC---hHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEE
Confidence 5777788999999999999875 578899998765432 134567899999999999999999999999999999999
Q ss_pred EecCCCChHHHhccc--------------------------cCCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 501 EYLKRGSLATNLSND--------------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~--------------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||+++++|.+.+... ....|.||||+||+++.++.+||+|||.+........
T Consensus 79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~-- 156 (265)
T cd06605 79 EYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLA-- 156 (265)
T ss_pred EecCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchhhHHHHh--
Confidence 999999998877532 1112349999999999999999999999976543221
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
....|+..|+||| ++.++|||||||++|||++|+.|+......... ... ..........+..... ....
T Consensus 157 ~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~--~~~~ 231 (265)
T cd06605 157 KTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDG--IFE-LLQYIVNEPPPRLPSG--KFSP 231 (265)
T ss_pred hcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccccccc--HHH-HHHHHhcCCCCCCChh--hcCH
Confidence 1267889999999 467899999999999999999997533211010 000 0111111111111111 0223
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.+.+++.+||..+|++|||+.|++.+.||..
T Consensus 232 ~~~~li~~~l~~~p~~Rpt~~~ll~~~~~~~ 262 (265)
T cd06605 232 DFQDFVNLCLIKDPRERPSYKELLEHPFIKK 262 (265)
T ss_pred HHHHHHHHHcCCCchhCcCHHHHhhCchhhc
Confidence 4678888999999999999999999999854
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity |
| >cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=255.11 Aligned_cols=224 Identities=29% Similarity=0.471 Sum_probs=166.2
Q ss_pred CcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCch-----HHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQ-----IADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~-----~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
|.....||+|+||.||+|.. .++..+|+|.+........ ....+.+.+|+.++++++||||+++++++.+.+..
T Consensus 2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~ 81 (267)
T cd06628 2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHL 81 (267)
T ss_pred ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCcc
Confidence 55678899999999999976 4578899998765432211 11235688999999999999999999999999999
Q ss_pred EEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
++||||+++++|.+++..... ..|.||||+||+++.++.+||+|||+++.......
T Consensus 82 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~~ 161 (267)
T cd06628 82 NIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSL 161 (267)
T ss_pred EEEEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCCcccccccc
Confidence 999999999999887754211 12349999999999999999999999987652211
Q ss_pred ------CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCC
Q 042735 553 ------NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620 (667)
Q Consensus 553 ------~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (667)
......|+..|+||| ++.++|||||||++|||+||+.||...... .... .......+..+...
T Consensus 162 ~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~~--~~~~~~~~~~~~~~ 236 (267)
T cd06628 162 STKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQL---QAIF--KIGENASPEIPSNI 236 (267)
T ss_pred cCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHH---HHHH--HHhccCCCcCCccc
Confidence 112356889999999 356899999999999999999998632211 0010 11111222222221
Q ss_pred CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 621 ~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
...+.+++.+||+.+|.+||++.||+++.|+
T Consensus 237 ------~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~ 267 (267)
T cd06628 237 ------SSEAIDFLEKTFEIDHNKRPTAAELLKHPFL 267 (267)
T ss_pred ------CHHHHHHHHHHccCCchhCcCHHHHhhCCCC
Confidence 1245678889999999999999999987653
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate |
| >cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=259.23 Aligned_cols=224 Identities=24% Similarity=0.405 Sum_probs=164.8
Q ss_pred cCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHA 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~ 493 (667)
++|...+.||+|+||.||+|... .+..+|||.+..... ....+.+.+|+++++++ +||||+++++++...
T Consensus 35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~ 111 (302)
T cd05055 35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAH---SSEREALMSELKIMSHLGNHENIVNLLGACTIG 111 (302)
T ss_pred HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCC---hHHHHHHHHHHHHHHhccCCCCcceEEEEEecC
Confidence 57888999999999999999641 234699998764322 22345789999999999 799999999999999
Q ss_pred CceEEEEEecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccc
Q 042735 494 RHSILIYEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFL 547 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~ 547 (667)
+..++||||+++|+|.+++..... ..|.||||+||+++.++.+|++|||+++..
T Consensus 112 ~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~ 191 (302)
T cd05055 112 GPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLARDI 191 (302)
T ss_pred CceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECCCcccccc
Confidence 999999999999999988754211 112399999999999999999999999865
Q ss_pred cCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCC
Q 042735 548 KPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618 (667)
Q Consensus 548 ~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (667)
...... .....++..|+||| ++.++|||||||++|||+| |+.|+..... ..... ..+......
T Consensus 192 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~---~~~~~-----~~~~~~~~~ 263 (302)
T cd05055 192 MNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPV---DSKFY-----KLIKEGYRM 263 (302)
T ss_pred cCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCc---hHHHH-----HHHHcCCcC
Confidence 433211 12234678899999 3568999999999999998 9998753211 00000 111111111
Q ss_pred CCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..+. .....+.+++.+||+.+|++|||+.|+++.+..
T Consensus 264 ~~~~--~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~ 300 (302)
T cd05055 264 AQPE--HAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGK 300 (302)
T ss_pred CCCC--CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHh
Confidence 1111 011256788899999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept |
| >cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=256.09 Aligned_cols=226 Identities=22% Similarity=0.376 Sum_probs=163.1
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCC-chHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe--CCceE
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPS-DQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH--ARHSI 497 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~-~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~--~~~~~ 497 (667)
+|+..+.||+|+||.||+|.. .++..+|+|++...... ...+..+.+.+|+.++++++||||+++++++.+ ....+
T Consensus 3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 82 (266)
T cd06651 3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLT 82 (266)
T ss_pred CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEE
Confidence 688889999999999999976 45788999987643221 122334568899999999999999999999875 35678
Q ss_pred EEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCC--
Q 042735 498 LIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS-- 551 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~-- 551 (667)
++|||+++++|.+.+..... ..|.|+||+||+++.++.+||+|||+++......
T Consensus 83 l~~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~ 162 (266)
T cd06651 83 IFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMS 162 (266)
T ss_pred EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCcccccccccc
Confidence 99999999999887753211 1234999999999999999999999998654321
Q ss_pred -CCcccccccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchH
Q 042735 552 -SNWSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624 (667)
Q Consensus 552 -~~~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (667)
.......|+..|+|||+ +.++|||||||++|||+||+.||..... ...... .......+..+... .
T Consensus 163 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~---~~~~~~-~~~~~~~~~~~~~~---~ 235 (266)
T cd06651 163 GTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEA---MAAIFK-IATQPTNPQLPSHI---S 235 (266)
T ss_pred CCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccch---HHHHHH-HhcCCCCCCCchhc---C
Confidence 11233568999999993 5689999999999999999999853211 111111 11111112222111 1
Q ss_pred HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
. .+.+++ +||..+|++||+|+||+++.+|.
T Consensus 236 ~---~~~~li-~~~~~~p~~Rp~~~eil~hp~~~ 265 (266)
T cd06651 236 E---HARDFL-GCIFVEARHRPSAEELLRHPFAQ 265 (266)
T ss_pred H---HHHHHH-HHhcCChhhCcCHHHHhcCcccc
Confidence 1 233343 78899999999999999988763
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development |
| >cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=252.39 Aligned_cols=217 Identities=26% Similarity=0.431 Sum_probs=164.9
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|+..+.||+|+||.||+|... ++.+|+|++..... ..+++.+|+.++++++||||+++++++.+....++||
T Consensus 6 ~~~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~ 79 (256)
T cd05039 6 KELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST-----AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVT 79 (256)
T ss_pred hhccceeeeecCCCceEEEEEec-CcEEEEEEeccchh-----HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEE
Confidence 47788899999999999999875 67799999865321 3567999999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 501 EYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||+++|+|.+.+.... ...|.||||+||+++.++.+||+|||+++......
T Consensus 80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~--- 156 (256)
T cd05039 80 EYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQ--- 156 (256)
T ss_pred EecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEccccccccccccc---
Confidence 9999999998875432 11234999999999999999999999998763222
Q ss_pred ccccccccccCCCC------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 555 SALVGTYRYVAPDY------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
....++..|+|||+ +.++||||||+++||+++ |+.||..... ..... ..........+.. ..
T Consensus 157 ~~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~----~~~~~-~~~~~~~~~~~~~------~~ 225 (256)
T cd05039 157 DSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL----KDVVP-HVEKGYRMEAPEG------CP 225 (256)
T ss_pred ccCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCH----HHHHH-HHhcCCCCCCccC------CC
Confidence 12345678999994 457999999999999997 9988753211 11111 1111111111111 12
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..+.+++.+||..+|++|||+.|++++|..
T Consensus 226 ~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 255 (256)
T cd05039 226 PEVYKVMKDCWELDPAKRPTFKQLREQLAL 255 (256)
T ss_pred HHHHHHHHHHhccChhhCcCHHHHHHHHhc
Confidence 356788889999999999999999998864
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk |
| >cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=254.63 Aligned_cols=220 Identities=23% Similarity=0.400 Sum_probs=162.7
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
.+|...+.||+|+||.||+|...++..+|+|++..... ..+.|.+|++++++++||||+++++++. ....++||
T Consensus 6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~-----~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~ 79 (262)
T cd05071 6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-----SPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVT 79 (262)
T ss_pred HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc-----CHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEE
Confidence 45788889999999999999887777799998864221 2346899999999999999999999875 45678999
Q ss_pred EecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC-
Q 042735 501 EYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN- 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~- 553 (667)
||+++|+|.+++..... ..|.||||+||+++.++.+||+|||.++........
T Consensus 80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~ 159 (262)
T cd05071 80 EYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 159 (262)
T ss_pred EcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCceeecccccccc
Confidence 99999999988764210 113399999999999999999999999865433221
Q ss_pred cccccccccccCCCC------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 WSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....++..|+|||+ +.++|||||||++|||+| |+.||..... ...... .........+ . ..
T Consensus 160 ~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~----~~~~~~-~~~~~~~~~~---~---~~ 228 (262)
T cd05071 160 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN----REVLDQ-VERGYRMPCP---P---EC 228 (262)
T ss_pred ccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCh----HHHHHH-HhcCCCCCCc---c---cc
Confidence 122346678999993 568999999999999999 7878753211 111111 0010011111 1 12
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
...+.+++.+||+.+|++||+++++.+.+..
T Consensus 229 ~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~ 259 (262)
T cd05071 229 PESLHDLMCQCWRKEPEERPTFEYLQAFLED 259 (262)
T ss_pred CHHHHHHHHHHccCCcccCCCHHHHHHHHHH
Confidence 3356789999999999999999999988753
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo |
| >cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-30 Score=261.39 Aligned_cols=228 Identities=23% Similarity=0.374 Sum_probs=172.1
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|.. .++..+|+|.+.... ....+.+.+|+.++++++||||+++++++...+..++|
T Consensus 19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~----~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv 94 (293)
T cd06647 19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQ----QPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVV 94 (293)
T ss_pred hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEecccc----chHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEE
Confidence 5788889999999999999975 467789999875321 12345688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 500 YEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
+||+++|+|.+++..... ..|.|+||+||+++.++.+||+|||++............
T Consensus 95 ~e~~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~~~~ 174 (293)
T cd06647 95 MEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST 174 (293)
T ss_pred EecCCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcceeccccccccccc
Confidence 999999999987754321 113499999999999999999999998866544433444
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
..|++.|+||| ++.++|||||||++||+++|+.||........ ... ........ ..........+
T Consensus 175 ~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~---~~~----~~~~~~~~--~~~~~~~~~~l 245 (293)
T cd06647 175 MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA---LYL----IATNGTPE--LQNPEKLSAIF 245 (293)
T ss_pred ccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhh---eee----hhcCCCCC--CCCccccCHHH
Confidence 57899999999 35689999999999999999999863321100 000 00011100 00111112346
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.+++.+||+.+|++||++.+++.+.||....
T Consensus 246 ~~li~~~l~~~p~~Rp~~~~il~h~~~~~~~ 276 (293)
T cd06647 246 RDFLNRCLEMDVEKRGSAKELLQHPFLKIAK 276 (293)
T ss_pred HHHHHHHccCChhhCcCHHHHhcCHHHhcCc
Confidence 6788899999999999999999999886543
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi |
| >cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=263.68 Aligned_cols=231 Identities=23% Similarity=0.345 Sum_probs=170.0
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|... ++..+|+|++.... .....+.+.+|+++++.++||||+++++++......++|
T Consensus 5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 81 (284)
T cd06620 5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGA---KSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMC 81 (284)
T ss_pred HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecC---cchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEE
Confidence 56777789999999999999864 57889999875432 123356789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||+++|+|.+.+.... ...|.||||+||+++.++.++|+|||+++..... ..
T Consensus 82 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~--~~ 159 (284)
T cd06620 82 MEFMDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINS--IA 159 (284)
T ss_pred EecCCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcEEEccCCcccchhhh--cc
Confidence 99999999987664321 1224499999999999999999999998754322 12
Q ss_pred ccccccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccC----CCChhhhhhhhccccCCCCCCCCCchH
Q 042735 555 SALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSI----LPSPSVINMRLDEMLDPRLPPPSPDVQ 624 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (667)
....||..|+|||+ +.++|||||||++||++||+.||...... ........ ....+.....+.....
T Consensus 160 ~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 236 (284)
T cd06620 160 DTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILD-LLQQIVQEPPPRLPSS-- 236 (284)
T ss_pred CccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHH-HHHHHhhccCCCCCch--
Confidence 34579999999993 56899999999999999999998632210 00000001 1111111111111111
Q ss_pred HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.....+.+++.+||+.+|++|||+.|+++++++..
T Consensus 237 ~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~~~~ 271 (284)
T cd06620 237 DFPEDLRDFVDACLLKDPTERPTPQQLCAMPPFIQ 271 (284)
T ss_pred hcCHHHHHHHHHHhcCCcccCcCHHHHhcCccccc
Confidence 12235678888999999999999999999988754
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=256.86 Aligned_cols=223 Identities=23% Similarity=0.365 Sum_probs=162.6
Q ss_pred HcCCcCcceeecccCeEEEEEEeCC------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPS------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA 493 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~ 493 (667)
.++|...+.||+|+||.||+|.... +..+|+|.+..... ......|.+|+.++++++||||+++++++.+.
T Consensus 5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~ 81 (277)
T cd05036 5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCS---EQDESDFLMEALIMSKFNHQNIVRLIGVSFER 81 (277)
T ss_pred HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccC
Confidence 4568888999999999999998743 45688887754321 22345799999999999999999999999999
Q ss_pred CceEEEEEecCCCChHHHhccccC-------------------------------CcccccccCCeeecCCC---ceEEe
Q 042735 494 RHSILIYEYLKRGSLATNLSNDAA-------------------------------AEELDISSKNVLLDLEH---KAHVS 539 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~~-------------------------------~~~~dlk~~NiLld~~~---~~kl~ 539 (667)
...++||||+++|+|.+++..... ..|.||||+||+++.++ .+||+
T Consensus 82 ~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~ 161 (277)
T cd05036 82 LPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIA 161 (277)
T ss_pred CCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceEec
Confidence 999999999999999988754311 11239999999998655 59999
Q ss_pred cccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhcc
Q 042735 540 DFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDE 610 (667)
Q Consensus 540 DFGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~ 610 (667)
|||+++........ .....++..|+||| ++.++|||||||++|||+| |+.||..... ....... ..
T Consensus 162 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~----~~~~~~~-~~ 236 (277)
T cd05036 162 DFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTN----QEVMEFV-TG 236 (277)
T ss_pred cCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCH----HHHHHHH-Hc
Confidence 99999875322111 11223356899999 5678999999999999997 9988753221 1111111 01
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 611 MLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
...+..+.. ....+.+++.+||+.+|++|||+++|++++.
T Consensus 237 ~~~~~~~~~------~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~ 276 (277)
T cd05036 237 GGRLDPPKG------CPGPVYRIMTDCWQHTPEDRPNFATILERIQ 276 (277)
T ss_pred CCcCCCCCC------CCHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence 001111111 1235678889999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well |
| >cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=265.55 Aligned_cols=223 Identities=24% Similarity=0.355 Sum_probs=167.7
Q ss_pred cceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 426 KYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
...||+|+||.||+|.. .++..+|||++.... ....+.+.+|+.++++++||||+++++.+..++..++||||++
T Consensus 27 ~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~ 102 (292)
T cd06658 27 FIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRK----QQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLE 102 (292)
T ss_pred hhcccCCCCeEEEEEEECCCCCEEEEEEEecch----HHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCC
Confidence 35689999999999976 457889999875421 2334568899999999999999999999999999999999999
Q ss_pred CCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcccccccc
Q 042735 505 RGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561 (667)
Q Consensus 505 ~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~ 561 (667)
+++|.+++..... ..|.||||+||+++.++.+||+|||++..............|+.
T Consensus 103 ~~~L~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~ 182 (292)
T cd06658 103 GGALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTP 182 (292)
T ss_pred CCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcchhhcccccccCceeecCc
Confidence 9999887644321 11349999999999999999999999986544333334467899
Q ss_pred cccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHH
Q 042735 562 RYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF 635 (667)
Q Consensus 562 ~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (667)
.|+||| ++.++|||||||++|||++|+.||..... .... ........+..+... .....+.+++.
T Consensus 183 ~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~----~~~~-~~~~~~~~~~~~~~~----~~~~~~~~li~ 253 (292)
T cd06658 183 YWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPP----LQAM-RRIRDNLPPRVKDSH----KVSSVLRGFLD 253 (292)
T ss_pred cccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHH-HHHHhcCCCcccccc----ccCHHHHHHHH
Confidence 999999 46789999999999999999999753221 0110 111111222222111 11224567788
Q ss_pred hccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 636 SCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 636 ~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
+||..+|.+|||++|++++.|+....
T Consensus 254 ~~l~~~P~~Rpt~~~il~~~~~~~~~ 279 (292)
T cd06658 254 LMLVREPSQRATAQELLQHPFLKLAG 279 (292)
T ss_pred HHccCChhHCcCHHHHhhChhhhccC
Confidence 99999999999999999998887443
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express |
| >KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=251.98 Aligned_cols=238 Identities=22% Similarity=0.314 Sum_probs=171.3
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe-----CCc
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH-----ARH 495 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~-----~~~ 495 (667)
.|...+.||+|+||.|..|.. .+|+.||||++...... .-..++-.||+++++.++|+|||.+++.+.. -+.
T Consensus 23 ~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~--~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~D 100 (359)
T KOG0660|consen 23 YYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFEN--QIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFND 100 (359)
T ss_pred eecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhc--hHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccce
Confidence 444567899999999999975 66899999998754322 2345678899999999999999999998865 457
Q ss_pred eEEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCC-
Q 042735 496 SILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD- 550 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~- 550 (667)
.|+|+|+|+ -+|...+.... ...|.|+||+|++++.+...||+|||+||.....
T Consensus 101 vYiV~elMe-tDL~~iik~~~~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~ 179 (359)
T KOG0660|consen 101 VYLVFELME-TDLHQIIKSQQDLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLARYLDKFF 179 (359)
T ss_pred eEEehhHHh-hHHHHHHHcCccccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccCCCEEeccccceeeccccC
Confidence 899999994 47776665433 1234599999999999999999999999987542
Q ss_pred -CCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccC---------CCChhhhh------hh
Q 042735 551 -SSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSI---------LPSPSVIN------MR 607 (667)
Q Consensus 551 -~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~---------~~~~~~~~------~~ 607 (667)
...+|..+.|..|-||| |+.+.||||.|||+.||++|++-|...+.+ ...+.... ..
T Consensus 180 ~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ 259 (359)
T KOG0660|consen 180 EDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEK 259 (359)
T ss_pred cccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHH
Confidence 23456678899999998 899999999999999999999866432221 11111100 00
Q ss_pred hccccC--CCCCCCC-C-chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 608 LDEMLD--PRLPPPS-P-DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 608 ~~~~~~--~~~~~~~-~-~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
.+..+. |..+... . -....-...+++..+++..||.+|+|++|.++|.++....-
T Consensus 260 ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hd 318 (359)
T KOG0660|consen 260 ARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHD 318 (359)
T ss_pred HHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcC
Confidence 111111 1111100 0 00111234567788999999999999999999999876543
|
|
| >cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=257.55 Aligned_cols=221 Identities=24% Similarity=0.466 Sum_probs=162.1
Q ss_pred cCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
.++.....||+|+||.||+|... ++..+|+|.+.... ....+.|.+|++++++++||||+++++++.+.+
T Consensus 5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~----~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~ 80 (280)
T cd05092 5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS----ESARQDFQREAELLTVLQHQHIVRFYGVCTEGR 80 (280)
T ss_pred HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCC----HHHHHHHHHHHHHHhcCCCCCCceEEEEEecCC
Confidence 35677889999999999999642 34578888875421 233467999999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhccccC---------------------------------------CcccccccCCeeecCCCc
Q 042735 495 HSILIYEYLKRGSLATNLSNDAA---------------------------------------AEELDISSKNVLLDLEHK 535 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~~---------------------------------------~~~~dlk~~NiLld~~~~ 535 (667)
..++||||+++|+|.+++..... ..|.||||+||++++++.
T Consensus 81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~~~~ 160 (280)
T cd05092 81 PLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGLV 160 (280)
T ss_pred ceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcCCCC
Confidence 99999999999999887753210 012399999999999999
Q ss_pred eEEecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhh
Q 042735 536 AHVSDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINM 606 (667)
Q Consensus 536 ~kl~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~ 606 (667)
+||+|||+++....... ......+++.|+||| ++.++|||||||++|||+| |+.||..... ......
T Consensus 161 ~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~----~~~~~~ 236 (280)
T cd05092 161 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSN----TEAIEC 236 (280)
T ss_pred EEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCH----HHHHHH
Confidence 99999999976533221 112234578899999 4678999999999999999 8888742211 111111
Q ss_pred hhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 607 RLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
. ........+... ...+.+++.+||+.+|++||+++||.+.+.
T Consensus 237 ~-~~~~~~~~~~~~------~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~ 279 (280)
T cd05092 237 I-TQGRELERPRTC------PPEVYAIMQGCWQREPQQRMVIKDIHSRLQ 279 (280)
T ss_pred H-HcCccCCCCCCC------CHHHHHHHHHHccCChhhCCCHHHHHHHHh
Confidence 0 111111111111 124667888999999999999999998874
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory |
| >cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=252.87 Aligned_cols=219 Identities=26% Similarity=0.463 Sum_probs=163.3
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
.+|+..+.||+|+||.||+|....+..+|+|++..... ....|.+|++++++++|||++++++++......++||
T Consensus 4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~ 78 (256)
T cd05112 4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAM-----SEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVF 78 (256)
T ss_pred hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCC-----CHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEE
Confidence 46778889999999999999887778899998764322 2346889999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC-c
Q 042735 501 EYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN-W 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~-~ 554 (667)
||+++|+|.+++..... ..|.|+||+||+++.++.+||+|||+++........ .
T Consensus 79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~ 158 (256)
T cd05112 79 EFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSS 158 (256)
T ss_pred EcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcceeecccCccccc
Confidence 99999999888754211 112399999999999999999999999865432111 1
Q ss_pred ccccccccccCCCC------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 555 SALVGTYRYVAPDY------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
....++.+|+|||+ +.++|||||||++|||++ |+.|+..... ..... ..........+.. ..
T Consensus 159 ~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~----~~~~~-~~~~~~~~~~~~~------~~ 227 (256)
T cd05112 159 TGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSN----SEVVE-TINAGFRLYKPRL------AS 227 (256)
T ss_pred CCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCH----HHHHH-HHhCCCCCCCCCC------CC
Confidence 12335678999993 557999999999999998 8998753211 00011 1111111111111 12
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHH
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l 655 (667)
..+.+++.+||+.+|++|||++|+++++
T Consensus 228 ~~~~~l~~~~l~~~p~~Rp~~~~~l~~l 255 (256)
T cd05112 228 QSVYELMQHCWKERPEDRPSFSLLLHQL 255 (256)
T ss_pred HHHHHHHHHHcccChhhCCCHHHHHHhh
Confidence 3577889999999999999999999886
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ |
| >cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=256.47 Aligned_cols=226 Identities=20% Similarity=0.290 Sum_probs=167.3
Q ss_pred HcCCcCcceeecccCeEEEEEEeCC-----CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe-C
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPS-----KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH-A 493 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~-----~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~-~ 493 (667)
.++|...+.||+|+||.||+|.... +..+++|++.... .....+.+.+|+.++++++||||++++|++.. +
T Consensus 5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~ 81 (280)
T cd05043 5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHA---SEIQVTLLLQESCLLYGLSHQNILPILHVCIEDG 81 (280)
T ss_pred hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence 3578888999999999999998755 6778999876432 22345678999999999999999999998876 5
Q ss_pred CceEEEEEecCCCChHHHhccccCC--------------------------------cccccccCCeeecCCCceEEecc
Q 042735 494 RHSILIYEYLKRGSLATNLSNDAAA--------------------------------EELDISSKNVLLDLEHKAHVSDF 541 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~~~--------------------------------~~~dlk~~NiLld~~~~~kl~DF 541 (667)
...++++||+++|+|.+++...... .|.||||+||+++.++.+||+||
T Consensus 82 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl~d~ 161 (280)
T cd05043 82 EPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDN 161 (280)
T ss_pred CCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEECCC
Confidence 6789999999999999887542110 12399999999999999999999
Q ss_pred cccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhcccc
Q 042735 542 GIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEML 612 (667)
Q Consensus 542 Gla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~ 612 (667)
|+++.+...... .....++..|+||| ++.++|||||||++||+++ |+.||..... .... .......
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~----~~~~-~~~~~~~ 236 (280)
T cd05043 162 ALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDP----FEMA-AYLKDGY 236 (280)
T ss_pred CCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCH----HHHH-HHHHcCC
Confidence 999865433211 12234677899999 4678999999999999999 9999753221 1111 1111111
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 613 DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
....+.. ....+.+++.+||+.+|++|||+.|+++.|....
T Consensus 237 ~~~~~~~------~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~ 277 (280)
T cd05043 237 RLAQPIN------CPDELFAVMACCWALDPEERPSFSQLVQCLTDFH 277 (280)
T ss_pred CCCCCCc------CCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 1111111 1224678889999999999999999999987654
|
Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It |
| >cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=271.87 Aligned_cols=238 Identities=20% Similarity=0.306 Sum_probs=167.0
Q ss_pred HHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC----
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA---- 493 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~---- 493 (667)
..++|...+.||+|+||.||+|.. ..+..+|||++...... ....+.+.+|+.+++.++||||+++++++...
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 92 (355)
T cd07874 15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQN--QTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLE 92 (355)
T ss_pred hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccC--hHHHHHHHHHHHHHHHhCCCchhceeeeeecccccc
Confidence 457899999999999999999975 45788999988654322 23345688999999999999999999988653
Q ss_pred --CceEEEEEecCCCChHHHhcc----------------------ccCCcccccccCCeeecCCCceEEecccccccccC
Q 042735 494 --RHSILIYEYLKRGSLATNLSN----------------------DAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 494 --~~~~lv~ey~~~g~L~~~l~~----------------------~~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~ 549 (667)
...++||||+++ ++.+.+.. .....|.||||+||+++.++.+||+|||+++....
T Consensus 93 ~~~~~~lv~e~~~~-~l~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~~ 171 (355)
T cd07874 93 EFQDVYLVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT 171 (355)
T ss_pred ccceeEEEhhhhcc-cHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCCCEEEeeCcccccCCC
Confidence 346999999986 45443321 11233569999999999999999999999986543
Q ss_pred CCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC-----------CChhhhh---hhhc
Q 042735 550 DSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL-----------PSPSVIN---MRLD 609 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~-----------~~~~~~~---~~~~ 609 (667)
. .......||+.|+||| |+.++|||||||++|||++|+.||....... +.+.... ....
T Consensus 172 ~-~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (355)
T cd07874 172 S-FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVR 250 (355)
T ss_pred c-cccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHH
Confidence 2 2233467999999999 5778999999999999999999986322100 0000000 0000
Q ss_pred cccC----------C------CCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 610 EMLD----------P------RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 610 ~~~~----------~------~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..++ + ..+............+.+++.+|++.||++|||+.|++++.|+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~hp~~~~~ 317 (355)
T cd07874 251 NYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQHPYINVW 317 (355)
T ss_pred HHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcCcchhcc
Confidence 0000 0 0000000000112356788999999999999999999999988644
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok |
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=289.55 Aligned_cols=228 Identities=23% Similarity=0.412 Sum_probs=167.3
Q ss_pred HHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe--CCc
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH--ARH 495 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~--~~~ 495 (667)
..++|.+.+.||+|+||.||+|... .+..+|+|.+..... .......|.+|+.++.+++|||||++++++.+ ...
T Consensus 11 ~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l--~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~ 88 (1021)
T PTZ00266 11 RLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGL--KEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQK 88 (1021)
T ss_pred ccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEecccc--CHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCE
Confidence 4578999999999999999999864 467788888764322 22345679999999999999999999998865 356
Q ss_pred eEEEEEecCCCChHHHhccc-----------------------------------cCCcccccccCCeeecCC-------
Q 042735 496 SILIYEYLKRGSLATNLSND-----------------------------------AAAEELDISSKNVLLDLE------- 533 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~-----------------------------------~~~~~~dlk~~NiLld~~------- 533 (667)
.|+||||+++|+|.+.+... ....|.||||+|||++.+
T Consensus 89 lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i 168 (1021)
T PTZ00266 89 LYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKI 168 (1021)
T ss_pred EEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccc
Confidence 89999999999998765320 013455999999999643
Q ss_pred ----------CceEEecccccccccCCCCCcccccccccccCCC--------CCCCchHHHHHHHHHHHHhCCCCCCCCc
Q 042735 534 ----------HKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD--------YRKKCDVYSFRVLALEVIKGKHPRGFVS 595 (667)
Q Consensus 534 ----------~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE--------~~~~~DV~sfGvvl~ElltG~~p~~~~~ 595 (667)
+.+||+|||+++...... ......||+.|+||| |+.++||||||||+|||+||+.||....
T Consensus 169 ~~~~~n~ng~~iVKLsDFGlAr~l~~~s-~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~ 247 (1021)
T PTZ00266 169 TAQANNLNGRPIAKIGDFGLSKNIGIES-MAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKAN 247 (1021)
T ss_pred cccccccCCCCceEEccCCccccccccc-cccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCC
Confidence 348999999998654322 233467999999999 3568999999999999999999985322
Q ss_pred cCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 596 SILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.. ..... .+.. .+.++.. .....+.+++..||+.+|++||++.|++.+.++..+
T Consensus 248 ~~---~qli~-~lk~--~p~lpi~-----~~S~eL~dLI~~~L~~dPeeRPSa~QlL~h~~ik~i 301 (1021)
T PTZ00266 248 NF---SQLIS-ELKR--GPDLPIK-----GKSKELNILIKNLLNLSAKERPSALQCLGYQIIKNV 301 (1021)
T ss_pred cH---HHHHH-HHhc--CCCCCcC-----CCCHHHHHHHHHHhcCChhHCcCHHHHhccHHHhhc
Confidence 11 01110 0101 1112111 112346778889999999999999999988777543
|
|
| >cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=264.90 Aligned_cols=234 Identities=21% Similarity=0.341 Sum_probs=168.1
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|+||.||+|... .++.+|+|++....... ...+.+.+|++++++++||||+++++++..++..++||
T Consensus 2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 79 (286)
T cd07846 2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDK--MVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVF 79 (286)
T ss_pred ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcc--hhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEE
Confidence 5778889999999999999875 57889999876533221 23456889999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 501 EYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
||++++++........ ...|.|++|+||++++++.+||+|||+++.........+.
T Consensus 80 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~ 159 (286)
T cd07846 80 EFVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTD 159 (286)
T ss_pred ecCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeeeeccCCccccCc
Confidence 9999998876553221 1123499999999999999999999999876544433445
Q ss_pred ccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhh---------h-------hhhccccC
Q 042735 557 LVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVI---------N-------MRLDEMLD 613 (667)
Q Consensus 557 ~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~---------~-------~~~~~~~~ 613 (667)
..|+..|+|||+ +.++|||||||++|||+||++|+............. . ........
T Consensus 160 ~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (286)
T cd07846 160 YVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRL 239 (286)
T ss_pred ccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHhhcccc
Confidence 678999999993 457999999999999999998875322100000000 0 00000000
Q ss_pred CCCCCCCCc---hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 614 PRLPPPSPD---VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 614 ~~~~~~~~~---~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
+......+. .......+.+++.+||+.+|++||++.+++++.||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~ 286 (286)
T cd07846 240 PEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLHHEFF 286 (286)
T ss_pred ccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhcCCCC
Confidence 100000000 00112357788999999999999999999988764
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI |
| >cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=267.67 Aligned_cols=233 Identities=24% Similarity=0.293 Sum_probs=165.2
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|+.. +++.+|||++..... ......+.|.+|+.++..++||||+++++++.+++..++|
T Consensus 1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv 79 (331)
T cd05597 1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEM-LKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLV 79 (331)
T ss_pred CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHH-hhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEE
Confidence 46888899999999999999864 578899998753111 1122345688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc--C-----------------------CcccccccCCeeecCCCceEEecccccccccCCCC-C
Q 042735 500 YEYLKRGSLATNLSNDA--A-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-N 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~--~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~ 553 (667)
|||+++|+|.+++.... . ..|.||||+|||++.++.+||+|||+++....... .
T Consensus 80 ~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~ 159 (331)
T cd05597 80 MDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQ 159 (331)
T ss_pred EecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCcc
Confidence 99999999998875311 1 11349999999999999999999999976543322 1
Q ss_pred cccccccccccCCCC-----------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCc
Q 042735 554 WSALVGTYRYVAPDY-----------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE~-----------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (667)
....+||+.|||||. +.++|||||||++|||++|+.||...... ...............+.....
T Consensus 160 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~----~~~~~i~~~~~~~~~~~~~~~ 235 (331)
T cd05597 160 SNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLV----ETYGKIMNHKEHFQFPPDVTD 235 (331)
T ss_pred ccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCHH----HHHHHHHcCCCcccCCCccCC
Confidence 233579999999982 45799999999999999999998532210 000000000000111211111
Q ss_pred hHHHHHHHHHHHHhcc--ccCCCCCCCHHHHHHHHHHhhhh
Q 042735 623 VQGKLISIMEVAFSCL--DVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 623 ~~~~~~~~~~~~~~Cl--~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
... .+.+++.+|+ ..++..||++++++++.|+....
T Consensus 236 ~~~---~~~~li~~ll~~~~~r~~r~~~~~~l~hp~~~~~~ 273 (331)
T cd05597 236 VSE---EAKDLIRRLICSPETRLGRNGLQDFKDHPFFEGID 273 (331)
T ss_pred CCH---HHHHHHHHHccCcccccCCCCHHHHhcCCCCCCCC
Confidence 112 3445555655 44445589999999999986544
|
Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, |
| >cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=259.13 Aligned_cols=226 Identities=24% Similarity=0.369 Sum_probs=165.9
Q ss_pred HcCCcCcceeecccCeEEEEEEeC--------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP--------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFC 490 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~--------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~ 490 (667)
.++|...+.||+|+||.||+|+.. ++..+|+|....... ....+.+.+|+.+++.+ +||||+++++++
T Consensus 14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~ 90 (304)
T cd05101 14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDAT---EKDLSDLVSEMEMMKMIGKHKNIINLLGAC 90 (304)
T ss_pred HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccc---hHHHHHHHHHHHHHHhhccCCCchheeEEE
Confidence 356788899999999999999642 234689998764321 23346789999999999 799999999999
Q ss_pred EeCCceEEEEEecCCCChHHHhcccc----------------------------------------CCcccccccCCeee
Q 042735 491 SHARHSILIYEYLKRGSLATNLSNDA----------------------------------------AAEELDISSKNVLL 530 (667)
Q Consensus 491 ~~~~~~~lv~ey~~~g~L~~~l~~~~----------------------------------------~~~~~dlk~~NiLl 530 (667)
......++||||+++|+|.+++.... ...|.||||+||++
T Consensus 91 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nili 170 (304)
T cd05101 91 TQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLV 170 (304)
T ss_pred ecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccceEEE
Confidence 99999999999999999998875421 01133999999999
Q ss_pred cCCCceEEecccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCCh
Q 042735 531 DLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSP 601 (667)
Q Consensus 531 d~~~~~kl~DFGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~ 601 (667)
+.++.+||+|||+++........ .....+++.|+||| |+.++|||||||++|||+| |..|+..... .
T Consensus 171 ~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~----~ 246 (304)
T cd05101 171 TENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV----E 246 (304)
T ss_pred cCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCH----H
Confidence 99999999999999876433221 22334677899999 4678999999999999999 7777642211 1
Q ss_pred hhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 602 SVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.... ..........+. .....+.+++.+||+.+|++||||.|+++.|....
T Consensus 247 ~~~~-~~~~~~~~~~~~------~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~ 297 (304)
T cd05101 247 ELFK-LLKEGHRMDKPA------NCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRIL 297 (304)
T ss_pred HHHH-HHHcCCcCCCCC------CCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHH
Confidence 1111 111111111111 11235667888999999999999999999987654
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=256.79 Aligned_cols=225 Identities=19% Similarity=0.347 Sum_probs=165.3
Q ss_pred HcCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA 493 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~ 493 (667)
.++|+..+.||+|+||.||+|..+ .+..+|+|.+.... .......+.+|+.++++++||||+++++++.+.
T Consensus 5 ~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~ 81 (288)
T cd05061 5 REKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESA---SLRERIEFLNEASVMKGFTCHHVVRLLGVVSKG 81 (288)
T ss_pred HHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcC---CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC
Confidence 467888999999999999999643 23479999875432 223345688999999999999999999999999
Q ss_pred CceEEEEEecCCCChHHHhcccc----------------------------------CCcccccccCCeeecCCCceEEe
Q 042735 494 RHSILIYEYLKRGSLATNLSNDA----------------------------------AAEELDISSKNVLLDLEHKAHVS 539 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~----------------------------------~~~~~dlk~~NiLld~~~~~kl~ 539 (667)
+..++||||+++|+|.+++.... ...|.||||+||+++.++.+||+
T Consensus 82 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~~~L~ 161 (288)
T cd05061 82 QPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIG 161 (288)
T ss_pred CCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCcEEEC
Confidence 99999999999999998885311 01123999999999999999999
Q ss_pred cccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhcc
Q 042735 540 DFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDE 610 (667)
Q Consensus 540 DFGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~ 610 (667)
|||+++........ .....++..|+||| ++.++|||||||++|||++ |+.||..... ..... .
T Consensus 162 Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~----~~~~~----~ 233 (288)
T cd05061 162 DFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSN----EQVLK----F 233 (288)
T ss_pred cCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCH----HHHHH----H
Confidence 99999865432211 12234577899999 3678999999999999999 7778753221 11111 1
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 611 MLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
..+...+..... ....+.+++.+||+.+|++|||+.++++.+...
T Consensus 234 ~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~ 278 (288)
T cd05061 234 VMDGGYLDQPDN---CPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDD 278 (288)
T ss_pred HHcCCCCCCCCC---CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhh
Confidence 111111111111 123577888999999999999999999887653
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta |
| >cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-29 Score=251.60 Aligned_cols=216 Identities=28% Similarity=0.445 Sum_probs=158.1
Q ss_pred ceeecccCeEEEEEEeCC----CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEe
Q 042735 427 YCIGSGRHGSVYRAELPS----KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEY 502 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~~----~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey 502 (667)
+.||+|+||.||+|.+.. +..+|+|.+...... ...+.+.+|++++++++|||||++++++. .+..++||||
T Consensus 1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~ 76 (257)
T cd05060 1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIA---AGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMEL 76 (257)
T ss_pred CccCccCceeEEEeEeeccCCCcceEEEEecccccch---HHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEe
Confidence 368999999999997533 257999987654321 34567999999999999999999999875 5568999999
Q ss_pred cCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcc---
Q 042735 503 LKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS--- 555 (667)
Q Consensus 503 ~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~--- 555 (667)
+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++..........
T Consensus 77 ~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~ 156 (257)
T cd05060 77 APLGPLLKYLKKRREIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATT 156 (257)
T ss_pred CCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccccceeecCCccccccc
Confidence 999999988864321 11339999999999999999999999987654332211
Q ss_pred cccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 556 ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
...++..|+||| ++.++|||||||++|||+| |+.||..... ...... .........+. . ...
T Consensus 157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~----~~~~~~-~~~~~~~~~~~---~---~~~ 225 (257)
T cd05060 157 AGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKG----AEVIAM-LESGERLPRPE---E---CPQ 225 (257)
T ss_pred CccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCH----HHHHHH-HHcCCcCCCCC---C---CCH
Confidence 122456899999 4668999999999999998 9999753221 111111 11110101111 1 123
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.+.+++.+||..+|++||++.++.+.+..
T Consensus 226 ~l~~li~~cl~~~p~~Rp~~~~l~~~l~~ 254 (257)
T cd05060 226 EIYSIMLSCWKYRPEDRPTFSELESTFRR 254 (257)
T ss_pred HHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence 56788899999999999999999998865
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi |
| >cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=256.85 Aligned_cols=230 Identities=27% Similarity=0.431 Sum_probs=161.4
Q ss_pred cCCcCcceeecccCeEEEEEEeC-----CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC--
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA-- 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-----~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~-- 493 (667)
.+|...+.||+|+||.||+|.+. ++..+|+|++.... ....+.|.+|++++++++|||||++++++...
T Consensus 4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~ 79 (284)
T cd05081 4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST----AEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR 79 (284)
T ss_pred ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCC----HHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCC
Confidence 35777889999999999999753 46789999876431 23346789999999999999999999987543
Q ss_pred CceEEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEeccccccccc
Q 042735 494 RHSILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLK 548 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~ 548 (667)
...++||||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++...
T Consensus 80 ~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~ 159 (284)
T cd05081 80 RNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLP 159 (284)
T ss_pred CceEEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCccccccc
Confidence 468899999999999988754211 1133999999999999999999999998765
Q ss_pred CCCCCc---ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC-----Ch--hhhhhhhcccc
Q 042735 549 PDSSNW---SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP-----SP--SVINMRLDEML 612 (667)
Q Consensus 549 ~~~~~~---~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~-----~~--~~~~~~~~~~~ 612 (667)
...... ....++..|+||| ++.++|||||||++|||++|..|+........ .. ........+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (284)
T cd05081 160 QDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELL 239 (284)
T ss_pred CCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHH
Confidence 433211 1123445699999 45689999999999999999876432111000 00 00000000111
Q ss_pred CCC-CCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 613 DPR-LPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 613 ~~~-~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
... ..+.... ....+.+++.+||+.+|++||||+||++.|..
T Consensus 240 ~~~~~~~~~~~---~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~ 282 (284)
T cd05081 240 KNNGRLPAPPG---CPAEIYAIMKECWNNDPSQRPSFSELALQVEA 282 (284)
T ss_pred hcCCcCCCCCC---CCHHHHHHHHHHccCChhhCCCHHHHHHHHHh
Confidence 111 1111111 12356788889999999999999999998864
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th |
| >cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=257.96 Aligned_cols=223 Identities=22% Similarity=0.394 Sum_probs=165.1
Q ss_pred HcCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA 493 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~ 493 (667)
.++|+..+.||+|+||.||+|... ++..+|+|.+..... ....+.|.+|++++++++||||+++++++.++
T Consensus 4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~ 80 (288)
T cd05050 4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS---ADMQADFQREAALMAEFDHPNIVKLLGVCAVG 80 (288)
T ss_pred hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcC---HHHHHHHHHHHHHHHhcCCCchheEEEEEcCC
Confidence 467889999999999999999753 356799998764322 23346799999999999999999999999999
Q ss_pred CceEEEEEecCCCChHHHhcccc----------------------------------------------CCcccccccCC
Q 042735 494 RHSILIYEYLKRGSLATNLSNDA----------------------------------------------AAEELDISSKN 527 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~----------------------------------------------~~~~~dlk~~N 527 (667)
+..++||||+++|+|.+++.... ...|.||||+|
T Consensus 81 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~n 160 (288)
T cd05050 81 KPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRN 160 (288)
T ss_pred CccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccHhh
Confidence 99999999999999988875311 01123999999
Q ss_pred eeecCCCceEEecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCC
Q 042735 528 VLLDLEHKAHVSDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSIL 598 (667)
Q Consensus 528 iLld~~~~~kl~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~ 598 (667)
|+++.++.+||+|||+++....... ......++..|+||| ++.++|||||||++|||++ |..||.....
T Consensus 161 il~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~-- 238 (288)
T cd05050 161 CLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAH-- 238 (288)
T ss_pred eEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH--
Confidence 9999999999999999986543221 111233567899999 4678999999999999998 8878642211
Q ss_pred CChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 599 PSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
... ...+.+....+.... ...++.+++.+||+.+|++|||+.|+++.|.
T Consensus 239 ---~~~---~~~~~~~~~~~~~~~---~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~ 287 (288)
T cd05050 239 ---EEV---IYYVRDGNVLSCPDN---CPLELYNLMRLCWSKLPSDRPSFASINRILQ 287 (288)
T ss_pred ---HHH---HHHHhcCCCCCCCCC---CCHHHHHHHHHHcccCcccCCCHHHHHHHhh
Confidence 110 111111111111111 1235778899999999999999999998875
|
Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M |
| >cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=259.21 Aligned_cols=227 Identities=25% Similarity=0.385 Sum_probs=166.1
Q ss_pred cCCcCcceeecccCeEEEEEEeCC--------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS--------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCS 491 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~--------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~ 491 (667)
++|...+.||+|+||.||+|+... ...+|+|.+..... ......+.+|++++.++ +||||+++++++.
T Consensus 18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (307)
T cd05098 18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDAT---EKDLSDLISEMEMMKMIGKHKNIINLLGACT 94 (307)
T ss_pred HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCC---hHHHHHHHHHHHHHHHhcCCCCEeeEEEEEe
Confidence 568888999999999999997522 24699998864321 23345688999999999 7999999999999
Q ss_pred eCCceEEEEEecCCCChHHHhccccC----------------------------------------CcccccccCCeeec
Q 042735 492 HARHSILIYEYLKRGSLATNLSNDAA----------------------------------------AEELDISSKNVLLD 531 (667)
Q Consensus 492 ~~~~~~lv~ey~~~g~L~~~l~~~~~----------------------------------------~~~~dlk~~NiLld 531 (667)
..+..++||||+++|+|.+++..... ..|.||||+||+++
T Consensus 95 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~ 174 (307)
T cd05098 95 QDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVT 174 (307)
T ss_pred cCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheEEc
Confidence 99999999999999999988854210 11239999999999
Q ss_pred CCCceEEecccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChh
Q 042735 532 LEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPS 602 (667)
Q Consensus 532 ~~~~~kl~DFGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~ 602 (667)
.++.+||+|||+++........ .....+++.|+||| ++.++|||||||++|||++ |+.|+.... ...
T Consensus 175 ~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~----~~~ 250 (307)
T cd05098 175 EDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP----VEE 250 (307)
T ss_pred CCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCC----HHH
Confidence 9999999999999865432211 11223457899999 4678999999999999998 888874221 111
Q ss_pred hhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 603 VINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.... .........+. . ....+.+++.+||..+|++||||.||++.+......
T Consensus 251 ~~~~-~~~~~~~~~~~---~---~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~~ 302 (307)
T cd05098 251 LFKL-LKEGHRMDKPS---N---CTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILAL 302 (307)
T ss_pred HHHH-HHcCCCCCCCC---c---CCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHHH
Confidence 1111 11111111111 1 123566788899999999999999999998876543
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=253.26 Aligned_cols=227 Identities=26% Similarity=0.340 Sum_probs=160.2
Q ss_pred CCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC-----c
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR-----H 495 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~-----~ 495 (667)
.|...+++|.|+||.||+|.... ++.+|||++..... ---+|+.+|++++|||||++.-+|.... .
T Consensus 25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r--------~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~ 96 (364)
T KOG0658|consen 25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR--------YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVY 96 (364)
T ss_pred EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC--------cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhH
Confidence 35567889999999999998644 68899999754322 1237999999999999999988886432 3
Q ss_pred eEEEEEecCCCChHHHhcc-----cc-----------------------CCcccccccCCeeecCC-CceEEeccccccc
Q 042735 496 SILIYEYLKRGSLATNLSN-----DA-----------------------AAEELDISSKNVLLDLE-HKAHVSDFGIAKF 546 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~-----~~-----------------------~~~~~dlk~~NiLld~~-~~~kl~DFGla~~ 546 (667)
..+||||||. +|++.+.. .+ ..-|.||||+|+|+|.+ |.+||||||-|+.
T Consensus 97 lnlVleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~ 175 (364)
T KOG0658|consen 97 LNLVLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICDFGSAKV 175 (364)
T ss_pred HHHHHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEeccCCccee
Confidence 3589999996 77776652 11 11134999999999965 9999999999999
Q ss_pred ccCCCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC---------Chhhh---hhh
Q 042735 547 LKPDSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP---------SPSVI---NMR 607 (667)
Q Consensus 547 ~~~~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~---------~~~~~---~~~ 607 (667)
+.......+.. =|..|-||| |+.+.||||.|||+.||+-|++-|...+.... .+... .+.
T Consensus 176 L~~~epniSYi-cSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn 254 (364)
T KOG0658|consen 176 LVKGEPNISYI-CSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMN 254 (364)
T ss_pred eccCCCceeEE-EeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcC
Confidence 87766554433 477999998 88999999999999999999987653322111 11110 011
Q ss_pred hc--cccCCCCCCCC-C--chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 608 LD--EMLDPRLPPPS-P--DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 608 ~~--~~~~~~~~~~~-~--~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.. +.-.|.+.... . .......+.++++.+++..+|.+|.++.|++.+.+|-
T Consensus 255 ~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFd 310 (364)
T KOG0658|consen 255 PNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALAHPFFD 310 (364)
T ss_pred cccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhcchhhH
Confidence 00 11111111111 0 1111223577889999999999999999999998875
|
|
| >cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=264.31 Aligned_cols=160 Identities=20% Similarity=0.349 Sum_probs=124.1
Q ss_pred cceeecccCeEEEEEEeC---CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe--CCceEEEE
Q 042735 426 KYCIGSGRHGSVYRAELP---SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH--ARHSILIY 500 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~~---~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~--~~~~~lv~ 500 (667)
...||+|+||.||+|+.. .+..+|+|.+..... ...+.+|++++++++|||||++++++.. ....++||
T Consensus 6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~------~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~ 79 (317)
T cd07868 6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGI------SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLF 79 (317)
T ss_pred ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCC------cHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEE
Confidence 357999999999999864 456899998764321 2346789999999999999999998864 45688999
Q ss_pred EecCCCChHHHhccc---------------------------------cCCcccccccCCeee----cCCCceEEecccc
Q 042735 501 EYLKRGSLATNLSND---------------------------------AAAEELDISSKNVLL----DLEHKAHVSDFGI 543 (667)
Q Consensus 501 ey~~~g~L~~~l~~~---------------------------------~~~~~~dlk~~NiLl----d~~~~~kl~DFGl 543 (667)
||+.+ +|.+.+... ....|.||||+|||+ +.++.+||+|||+
T Consensus 80 e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~ 158 (317)
T cd07868 80 DYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGF 158 (317)
T ss_pred eccCC-CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCc
Confidence 99875 665554211 011244999999999 4668999999999
Q ss_pred cccccCCCC---CcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCC
Q 042735 544 AKFLKPDSS---NWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRG 592 (667)
Q Consensus 544 a~~~~~~~~---~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~ 592 (667)
++....... ......||+.|+||| |+.++||||+||++|||+||++||.
T Consensus 159 a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~ 217 (317)
T cd07868 159 ARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFH 217 (317)
T ss_pred eeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCcc
Confidence 987543221 223467899999999 4568999999999999999999985
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p |
| >cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=254.51 Aligned_cols=224 Identities=25% Similarity=0.383 Sum_probs=167.4
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|... ++..+++|.+..... ...+.+.+|++++++++||||++++|++.+.+..+++
T Consensus 3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~----~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~ 78 (262)
T cd06613 3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPG----DDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIV 78 (262)
T ss_pred cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCch----hhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEE
Confidence 56888899999999999999864 567899998764322 2346789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||+++++|.+.+.... ...|.||||+||+++.++.+||+|||++..........
T Consensus 79 ~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~ 158 (262)
T cd06613 79 MEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKR 158 (262)
T ss_pred EeCCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccchhhhhhhhcc
Confidence 99999999988765431 01234999999999999999999999998765433233
Q ss_pred ccccccccccCCCC---------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 555 SALVGTYRYVAPDY---------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~---------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
....|+..|+|||. +.++|||||||++|||+||+.|+...... .......... ..+.. ......
T Consensus 159 ~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~---~~~~~~~~~~-~~~~~---~~~~~~ 231 (262)
T cd06613 159 KSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPM---RALFLISKSN-FPPPK---LKDKEK 231 (262)
T ss_pred ccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHH---HHHHHHHhcc-CCCcc---ccchhh
Confidence 45678999999993 23689999999999999999997532211 1111111010 11100 011112
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHH
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQL 655 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l 655 (667)
....+.+++.+||..+|.+|||+++|+.+-
T Consensus 232 ~~~~~~~li~~~l~~~p~~Rpt~~~il~~~ 261 (262)
T cd06613 232 WSPVFHDFIKKCLTKDPKKRPTATKLLQHP 261 (262)
T ss_pred hhHHHHHHHHHHcCCChhhCCCHHHHhcCC
Confidence 234577889999999999999999998753
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ |
| >cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4 | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-29 Score=259.02 Aligned_cols=226 Identities=24% Similarity=0.387 Sum_probs=165.1
Q ss_pred cCCcCcceeecccCeEEEEEEeC--------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP--------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCS 491 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~--------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~ 491 (667)
++|...+.||+|+||.||+|+.. ....+|+|.+..... ......+.+|+++++++ +|||||++++++.
T Consensus 12 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~ 88 (314)
T cd05099 12 DRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNAT---DKDLADLISEMELMKLIGKHKNIINLLGVCT 88 (314)
T ss_pred HHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCC---hHHHHHHHHHHHHHHhccCCCCeeeEEEEEc
Confidence 46778899999999999999642 234688998764322 23345788999999999 5999999999999
Q ss_pred eCCceEEEEEecCCCChHHHhcccc----------------------------------------CCcccccccCCeeec
Q 042735 492 HARHSILIYEYLKRGSLATNLSNDA----------------------------------------AAEELDISSKNVLLD 531 (667)
Q Consensus 492 ~~~~~~lv~ey~~~g~L~~~l~~~~----------------------------------------~~~~~dlk~~NiLld 531 (667)
+.+..++||||+++|+|.+++.... ...|.||||+||+++
T Consensus 89 ~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~ 168 (314)
T cd05099 89 QEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVT 168 (314)
T ss_pred cCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEEEc
Confidence 9999999999999999998875321 011239999999999
Q ss_pred CCCceEEecccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChh
Q 042735 532 LEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPS 602 (667)
Q Consensus 532 ~~~~~kl~DFGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~ 602 (667)
.++.+||+|||+++........ .....++..||||| ++.++|||||||++|||++ |+.||..... ..
T Consensus 169 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~----~~ 244 (314)
T cd05099 169 EDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPV----EE 244 (314)
T ss_pred CCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCH----HH
Confidence 9999999999999866432211 11223456899999 4678999999999999999 8888753211 11
Q ss_pred hhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 603 VINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.... .........+. . ...++.+++.+||..+|++|||+.|+++.+.....
T Consensus 245 ~~~~-~~~~~~~~~~~---~---~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~ 295 (314)
T cd05099 245 LFKL-LREGHRMDKPS---N---CTHELYMLMRECWHAVPTQRPTFKQLVEALDKVLA 295 (314)
T ss_pred HHHH-HHcCCCCCCCC---C---CCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHH
Confidence 1111 11111111111 1 12246678889999999999999999998887654
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-30 Score=261.24 Aligned_cols=235 Identities=20% Similarity=0.353 Sum_probs=167.7
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+....||+|+||.||+|... +++.+|+|++...... ....+.+.+|++++++++||||+++++++...+..++|
T Consensus 1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~--~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v 78 (286)
T cd07847 1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDD--PVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLV 78 (286)
T ss_pred CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccC--ccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEE
Confidence 36778889999999999999875 5788999987543211 11234688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
|||++++.+........ ...|.||||+||+++.++.+||+|||++...........
T Consensus 79 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~ 158 (286)
T cd07847 79 FEYCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDYT 158 (286)
T ss_pred EeccCccHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECccccceecCCCccccc
Confidence 99999998876653221 112349999999999999999999999987654433333
Q ss_pred cccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh------hhccccCC-------C
Q 042735 556 ALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM------RLDEMLDP-------R 615 (667)
Q Consensus 556 ~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~------~~~~~~~~-------~ 615 (667)
...|+..|+|||+ +.++|||||||++|||+||+.||............... ......+. .
T Consensus 159 ~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (286)
T cd07847 159 DYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLS 238 (286)
T ss_pred CcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhccccccccccc
Confidence 4568899999993 46899999999999999999998532211000000000 00000000 0
Q ss_pred CCCCC--Cch----HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 616 LPPPS--PDV----QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 616 ~~~~~--~~~----~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.+.+. ... ......+.+++.+||+.+|++|||+.|++.+.||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~~~f 286 (286)
T cd07847 239 IPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLEHPYF 286 (286)
T ss_pred CCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhcCCCC
Confidence 01000 000 0112356789999999999999999999988765
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio |
| >cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6 | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-30 Score=264.37 Aligned_cols=222 Identities=24% Similarity=0.379 Sum_probs=165.7
Q ss_pred cceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 426 KYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
...||+|+||.||+|.. .++..+|+|.+..... ...+.+.+|+.++++++||||+++++++..++..++||||++
T Consensus 26 ~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~----~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~ 101 (297)
T cd06659 26 YIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQ----QRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQ 101 (297)
T ss_pred hhhcCCCCceeEEEEEEcCCCCEEEEEEEEeccc----chHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCC
Confidence 34689999999999976 4678899998754221 224568899999999999999999999999999999999999
Q ss_pred CCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcccccccc
Q 042735 505 RGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561 (667)
Q Consensus 505 ~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~ 561 (667)
+++|...+..... ..|.||||+||+++.++.+||+|||+++.............|+.
T Consensus 102 ~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~ 181 (297)
T cd06659 102 GGALTDIVSQTRLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTP 181 (297)
T ss_pred CCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeechhHhhcccccccccceecCc
Confidence 9999876643221 12349999999999999999999999986554433334567999
Q ss_pred cccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHH
Q 042735 562 RYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF 635 (667)
Q Consensus 562 ~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (667)
.|+||| ++.++|||||||++|||++|+.||...... ... ........+.... .. .....+.+++.
T Consensus 182 ~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~----~~~-~~~~~~~~~~~~~-~~---~~~~~l~~~i~ 252 (297)
T cd06659 182 YWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPV----QAM-KRLRDSPPPKLKN-AH---KISPVLRDFLE 252 (297)
T ss_pred cccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH----HHH-HHHhccCCCCccc-cC---CCCHHHHHHHH
Confidence 999999 366899999999999999999997532210 000 0111110111110 01 11224667888
Q ss_pred hccccCCCCCCCHHHHHHHHHHhhh
Q 042735 636 SCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 636 ~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
+||+.+|++||++++++++.++...
T Consensus 253 ~~l~~~P~~Rps~~~ll~~~~~~~~ 277 (297)
T cd06659 253 RMLTREPQERATAQELLDHPFLLQT 277 (297)
T ss_pred HHhcCCcccCcCHHHHhhChhhccC
Confidence 9999999999999999999887644
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i |
| >cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=254.29 Aligned_cols=223 Identities=19% Similarity=0.335 Sum_probs=167.8
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|+||.||++.. .++..+|+|++..... .....+++.+|++++++++||||+++++++.+.+..++||
T Consensus 1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~ 78 (256)
T cd08218 1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKM--SPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVM 78 (256)
T ss_pred CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhC--ChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEE
Confidence 467788999999999999975 4678899998754321 1233457899999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 501 EYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||+++++|.+.+..... ..|.||+|+||+++.++.+||+|||++..........
T Consensus 79 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~ 158 (256)
T cd08218 79 DYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELA 158 (256)
T ss_pred ecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhhh
Confidence 99999999887754211 0123999999999999999999999998664433223
Q ss_pred ccccccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
....|++.|+|||+ +.++|||||||++|||+||+.|+..... .... ........+..... ...
T Consensus 159 ~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~----~~~~----~~~~~~~~~~~~~~---~~~ 227 (256)
T cd08218 159 RTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNM----KNLV----LKIIRGSYPPVSSH---YSY 227 (256)
T ss_pred hhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCH----HHHH----HHHhcCCCCCCccc---CCH
Confidence 34568999999994 5689999999999999999999753210 1111 11111111111111 123
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.+.+++.+||+.+|++||+|.||+++.|+
T Consensus 228 ~~~~li~~~l~~~p~~Rp~~~~vl~~~~~ 256 (256)
T cd08218 228 DLRNLVSQLFKRNPRDRPSVNSILEKNFI 256 (256)
T ss_pred HHHHHHHHHhhCChhhCcCHHHHhhCcCC
Confidence 46788889999999999999999998664
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti |
| >cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=251.95 Aligned_cols=220 Identities=22% Similarity=0.382 Sum_probs=162.1
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|+....||+|+||.||+|...++..+|+|++.... ...+.|.+|++++++++|||++++++++. .+..++||
T Consensus 6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~-----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~ 79 (260)
T cd05069 6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT-----MMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVT 79 (260)
T ss_pred HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC-----ccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEE
Confidence 3577788999999999999998777779999875422 12356889999999999999999999885 45688999
Q ss_pred EecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC-
Q 042735 501 EYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN- 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~- 553 (667)
||+++|+|.+++..... ..|.||||+||++++++.+||+|||+++........
T Consensus 80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~ 159 (260)
T cd05069 80 EFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTA 159 (260)
T ss_pred EcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccceEccCCcccc
Confidence 99999999988754211 112399999999999999999999999865432211
Q ss_pred cccccccccccCCCC------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 WSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....++..|+|||+ +.++|||||||++|||+| |+.||..... ..... .......+..+ . ..
T Consensus 160 ~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~----~~~~~-~~~~~~~~~~~---~---~~ 228 (260)
T cd05069 160 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVN----REVLE-QVERGYRMPCP---Q---GC 228 (260)
T ss_pred cCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCH----HHHHH-HHHcCCCCCCC---c---cc
Confidence 122346778999994 568999999999999999 8888753211 11111 11111111111 1 12
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
...+.+++.+||+.+|++||++++|.+.+..
T Consensus 229 ~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 259 (260)
T cd05069 229 PESLHELMKLCWKKDPDERPTFEYIQSFLED 259 (260)
T ss_pred CHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence 2356788889999999999999999988753
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an |
| >cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=252.78 Aligned_cols=223 Identities=24% Similarity=0.354 Sum_probs=165.8
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe-CCceEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH-ARHSILI 499 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~-~~~~~lv 499 (667)
+|+..+.||+|++|.||+|... +++.+|+|++..... .....+.+.+|++++++++|||++++++.+.. ....++|
T Consensus 1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv 78 (257)
T cd08223 1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNA--SRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIV 78 (257)
T ss_pred CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhc--CHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEE
Confidence 4677889999999999999764 467899998754222 12334568899999999999999999998764 4467899
Q ss_pred EEecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 500 YEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
|||+++++|.+++..... ..|.||||+||+++.++.+||+|||+++........
T Consensus 79 ~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~~ 158 (257)
T cd08223 79 MGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDM 158 (257)
T ss_pred ecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEEecccCCc
Confidence 999999999887754210 113399999999999999999999999876544333
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
.....|++.|+||| ++.++|||||||++|||++|+.|+..... ..... .......+..... ..
T Consensus 159 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~----~~~~~----~~~~~~~~~~~~~---~~ 227 (257)
T cd08223 159 ASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDM----NSLVY----RIIEGKLPPMPKD---YS 227 (257)
T ss_pred cccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH----HHHHH----HHHhcCCCCCccc---cC
Confidence 44567899999999 35689999999999999999999753221 11111 1111111111111 12
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..+.+++.+||+.+|++|||+.+++++.|+
T Consensus 228 ~~~~~li~~~l~~~p~~Rp~~~~~l~~~~~ 257 (257)
T cd08223 228 PELGELIATMLSKRPEKRPSVKSILRQPYI 257 (257)
T ss_pred HHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence 256788889999999999999999988663
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. |
| >cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-29 Score=251.24 Aligned_cols=229 Identities=24% Similarity=0.395 Sum_probs=174.3
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|++|.||+|... ++..++||++...... ...+.+.+|++.+.+++||||+++++++...+..++|
T Consensus 1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv 77 (264)
T cd06623 1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDE---EFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIV 77 (264)
T ss_pred CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcch---HHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEE
Confidence 36788899999999999999875 4889999988654321 3456799999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccc-------------------------cCCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSND-------------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~-------------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||+++++|.+++... ....|.|++|+||+++.++.+||+|||+++.........
T Consensus 78 ~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~ 157 (264)
T cd06623 78 LEYMDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQC 157 (264)
T ss_pred EEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCccceecccCCCcc
Confidence 9999999998877531 122345999999999999999999999998765544433
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
....|+..|+||| ++.++||||||+++|||+||+.|+..... ..... ....+.....+..... ....
T Consensus 158 ~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~--~~~~~---~~~~~~~~~~~~~~~~--~~~~ 230 (264)
T cd06623 158 NTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQ--PSFFE---LMQAICDGPPPSLPAE--EFSP 230 (264)
T ss_pred cceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccc--cCHHH---HHHHHhcCCCCCCCcc--cCCH
Confidence 3567899999999 35689999999999999999999864321 00000 0111111111111111 0123
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.+.+++.+||..+|++|||+.|++++.|+..
T Consensus 231 ~l~~li~~~l~~~p~~R~~~~~ll~~~~~~~ 261 (264)
T cd06623 231 EFRDFISACLQKDPKKRPSAAELLQHPFIKK 261 (264)
T ss_pred HHHHHHHHHccCChhhCCCHHHHHhCHHHHh
Confidence 5677888999999999999999999988754
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of |
| >PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-30 Score=261.06 Aligned_cols=228 Identities=27% Similarity=0.447 Sum_probs=166.6
Q ss_pred CcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|+..+.||+|+||.||+|+... ++.+|+|.+..... .........+|+.++++++||||+++++++.+....++|||
T Consensus 1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~--~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~ 78 (260)
T PF00069_consen 1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEI--EEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVME 78 (260)
T ss_dssp EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTH--HHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEE
T ss_pred CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccc--cccccchhhhhhhcccccccccccccccccccccccccccc
Confidence 4567889999999999998755 56899999876422 12222345669999999999999999999999999999999
Q ss_pred ecCCCChHHHhccc-cC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcccc
Q 042735 502 YLKRGSLATNLSND-AA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL 557 (667)
Q Consensus 502 y~~~g~L~~~l~~~-~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~ 557 (667)
|+++++|.+++... .. ..|.||||+||++++++.++|+|||.+.............
T Consensus 79 ~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~ 158 (260)
T PF00069_consen 79 YCPGGSLQDYLQKNKPLSEEEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSVKLSENNENFNPF 158 (260)
T ss_dssp EETTEBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999887621 11 1234999999999999999999999998643333334556
Q ss_pred cccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 558 VGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 558 ~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
.||..|+|||. +.++||||+|+++|||++|+.|+..... ..... .......................+
T Consensus 159 ~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 233 (260)
T PF00069_consen 159 VGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNS----DDQLE-IIEKILKRPLPSSSQQSREKSEEL 233 (260)
T ss_dssp SSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSH----HHHHH-HHHHHHHTHHHHHTTSHTTSHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc----hhhhh-hhhhcccccccccccccchhHHHH
Confidence 78999999993 4579999999999999999999764310 00000 000000000000000000112467
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.+++.+||+.+|++||++.+++++.||
T Consensus 234 ~~li~~~l~~~p~~R~~~~~l~~~~~~ 260 (260)
T PF00069_consen 234 RDLIKKMLSKDPEQRPSAEELLKHPWF 260 (260)
T ss_dssp HHHHHHHSSSSGGGSTTHHHHHTSGGG
T ss_pred HHHHHHHccCChhHCcCHHHHhcCCCC
Confidence 788899999999999999999998875
|
Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A .... |
| >cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-30 Score=267.22 Aligned_cols=234 Identities=23% Similarity=0.294 Sum_probs=166.4
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+++... +..+|+|.+.+... ........|.+|+.++..++||||+++++++.+.+..++|
T Consensus 1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv 79 (332)
T cd05623 1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEM-LKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLV 79 (332)
T ss_pred CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHH-HHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEE
Confidence 368888999999999999998754 67799998753211 1112234588899999999999999999999999999999
Q ss_pred EEecCCCChHHHhccc--cC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCC-C
Q 042735 500 YEYLKRGSLATNLSND--AA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-N 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~--~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~ 553 (667)
|||+++|+|.+++... .. ..|.||||+|||++.++.+||+|||+++....... .
T Consensus 80 ~ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~ 159 (332)
T cd05623 80 MDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQ 159 (332)
T ss_pred EeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEeecchheecccCCcce
Confidence 9999999999888542 10 11349999999999999999999999976543322 2
Q ss_pred cccccccccccCCC-----------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCc
Q 042735 554 WSALVGTYRYVAPD-----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE-----------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (667)
....+||+.||||| |+.++|||||||++|||++|+.||...... ...............+.....
T Consensus 160 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~----~~~~~i~~~~~~~~~p~~~~~ 235 (332)
T cd05623 160 SSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLV----ETYGKIMNHKERFQFPAQVTD 235 (332)
T ss_pred ecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHH----HHHHHHhCCCccccCCCcccc
Confidence 23457999999999 345899999999999999999998633211 111111111011111211111
Q ss_pred hHHHHHHHHHHHHhcccc--CCCCCCCHHHHHHHHHHhhhhh
Q 042735 623 VQGKLISIMEVAFSCLDV--SPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 623 ~~~~~~~~~~~~~~Cl~~--~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
.. ..+.+++.+|+.. ++..||+++|++++.||....|
T Consensus 236 ~s---~~~~~li~~ll~~~~~r~~r~~~~~~~~h~~f~~~~~ 274 (332)
T cd05623 236 VS---EDAKDLIRRLICSREHRLGQNGIEDFKQHPFFTGIDW 274 (332)
T ss_pred CC---HHHHHHHHHHccChhhhcCCCCHHHHhCCCCcCCCCH
Confidence 11 2345566676654 4445799999999999876554
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw |
| >cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-29 Score=253.98 Aligned_cols=223 Identities=20% Similarity=0.394 Sum_probs=162.8
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCc----eEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKE----FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~----~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
++|+..+.||+|+||.||+|.+ .++. .||+|.+..... ....+.+.+|+.++.++.||||++++|++.. ..
T Consensus 7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~---~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~ 82 (279)
T cd05109 7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTS---PKANKEILDEAYVMAGVGSPYVCRLLGICLT-ST 82 (279)
T ss_pred hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCC---HHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-CC
Confidence 5788889999999999999975 3443 379998764322 2334678999999999999999999999975 45
Q ss_pred eEEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCC
Q 042735 496 SILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
.+++|||+++|+|.+.+..... ..|.||||+||+++.++.+||+|||+++.....
T Consensus 83 ~~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~ 162 (279)
T cd05109 83 VQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDID 162 (279)
T ss_pred cEEEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCceeecccc
Confidence 7789999999999988864211 113399999999999999999999999876533
Q ss_pred CCCc--ccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 551 SSNW--SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 551 ~~~~--~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
.... ....+++.|+||| ++.++|||||||++|||+| |+.||..... ..... .+.....+..+.
T Consensus 163 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~----~~~~~-~~~~~~~~~~~~--- 234 (279)
T cd05109 163 ETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPA----REIPD-LLEKGERLPQPP--- 234 (279)
T ss_pred cceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCH----HHHHH-HHHCCCcCCCCc---
Confidence 2211 1223567899999 4678999999999999998 8888753211 11111 111111111111
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.....+.+++.+||+.||++||++.++++.+...
T Consensus 235 ---~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~ 268 (279)
T cd05109 235 ---ICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRM 268 (279)
T ss_pred ---cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHh
Confidence 1223567788899999999999999999887654
|
Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve |
| >cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=256.50 Aligned_cols=228 Identities=26% Similarity=0.439 Sum_probs=164.7
Q ss_pred CcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCc------hHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSD------QIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~------~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
|...+.||+|+||.||+|.. .++..+|+|.+....... .....+.+.+|+.++++++||||+++++++...+.
T Consensus 3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~ 82 (272)
T cd06629 3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEY 82 (272)
T ss_pred eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCc
Confidence 55677899999999999975 467889999875321110 11123468899999999999999999999999999
Q ss_pred eEEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 496 SILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
.++||||+++|+|.+.+..... ..|.||||+||+++.++.+|++|||+++......
T Consensus 83 ~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~ 162 (272)
T cd06629 83 LSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSDDIY 162 (272)
T ss_pred eEEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEEeeccccccccccc
Confidence 9999999999999887754321 1133999999999999999999999998654321
Q ss_pred --CCcccccccccccCCC--------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 552 --SNWSALVGTYRYVAPD--------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 552 --~~~~~~~Gt~~y~aPE--------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
.......|+..|+||| ++.++|||||||++||+++|+.|+...... ....... .....+..+..
T Consensus 163 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~---~~~~~~~-~~~~~~~~~~~-- 236 (272)
T cd06629 163 DNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAI---AAMFKLG-NKRSAPPIPPD-- 236 (272)
T ss_pred cccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcchH---HHHHHhh-ccccCCcCCcc--
Confidence 1123456899999999 355799999999999999999997532210 0000000 00011111111
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
........+.+++.+||..+|++|||+++|+++.|
T Consensus 237 ~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~ 271 (272)
T cd06629 237 VSMNLSPVALDFLNACFTINPDNRPTARELLQHPF 271 (272)
T ss_pred ccccCCHHHHHHHHHHhcCChhhCCCHHHHhhCCC
Confidence 00112235677888999999999999999998865
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte |
| >cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=257.40 Aligned_cols=230 Identities=19% Similarity=0.266 Sum_probs=167.5
Q ss_pred CcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|+..+.||+|+||+||+|.. .+++.+|+|.+...... .......+.+|++++++++|+||+++++++..++..++|||
T Consensus 2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e 80 (285)
T cd05632 2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIK-KRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLT 80 (285)
T ss_pred ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhh-hhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEE
Confidence 55667899999999999976 56788999987543211 11223457889999999999999999999999999999999
Q ss_pred ecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 502 YLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 502 y~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
|+++|+|.+.+.... ...|.||||+||+++.++.+||+|||+++...... ...
T Consensus 81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~-~~~ 159 (285)
T cd05632 81 IMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGE-SIR 159 (285)
T ss_pred eccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcceecCCCC-ccc
Confidence 999999987664321 11134999999999999999999999997654322 223
Q ss_pred cccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 556 ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
...|++.|+||| ++.++|||||||++|||+||+.||......... .......... ....+.. ....
T Consensus 160 ~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~-~~~~~~~~~~-~~~~~~~------~~~~ 231 (285)
T cd05632 160 GRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKR-EEVDRRVLET-EEVYSAK------FSEE 231 (285)
T ss_pred CCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHH-HHHHHhhhcc-ccccCcc------CCHH
Confidence 457999999999 467899999999999999999998632210000 0000000000 0111111 1124
Q ss_pred HHHHHHhccccCCCCCCC-----HHHHHHHHHHhhhhh
Q 042735 630 IMEVAFSCLDVSPESRPT-----MQTITQQLLFSLVYF 662 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RPt-----~~ev~~~l~~~~~~~ 662 (667)
+.+++..||+.+|++||+ +.+++.+.|+....+
T Consensus 232 ~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~~~ 269 (285)
T cd05632 232 AKSICKMLLTKDPKQRLGCQEEGAGEVKRHPFFRNMNF 269 (285)
T ss_pred HHHHHHHHccCCHhHcCCCcccChHHHHcChhhhcCCH
Confidence 567888999999999999 889999988865543
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with |
| >cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-29 Score=258.32 Aligned_cols=224 Identities=24% Similarity=0.372 Sum_probs=165.9
Q ss_pred HHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCC--
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHAR-- 494 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~-- 494 (667)
++++|+..+.||+|+||.||+|... ++..+++|.+.... ...+.|.+|+++++++ +||||+++++++.+..
T Consensus 4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~-----~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~ 78 (275)
T cd06608 4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIE-----DEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPP 78 (275)
T ss_pred chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCc-----hhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCC
Confidence 4678999999999999999999874 56789999875432 1345789999999999 6999999999997644
Q ss_pred ----ceEEEEEecCCCChHHHhcccc----------------------------CCcccccccCCeeecCCCceEEeccc
Q 042735 495 ----HSILIYEYLKRGSLATNLSNDA----------------------------AAEELDISSKNVLLDLEHKAHVSDFG 542 (667)
Q Consensus 495 ----~~~lv~ey~~~g~L~~~l~~~~----------------------------~~~~~dlk~~NiLld~~~~~kl~DFG 542 (667)
..++||||+++++|.+.+.... ...|.||+|+||+++.++.+||+|||
T Consensus 79 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~ 158 (275)
T cd06608 79 GNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFG 158 (275)
T ss_pred CcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCc
Confidence 4899999999999987764311 01133999999999999999999999
Q ss_pred ccccccCCCCCcccccccccccCCCC-----------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccc
Q 042735 543 IAKFLKPDSSNWSALVGTYRYVAPDY-----------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEM 611 (667)
Q Consensus 543 la~~~~~~~~~~~~~~Gt~~y~aPE~-----------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~ 611 (667)
++..............|++.|+|||+ +.++|||||||++|||+||+.||...... ..... ....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~~~--~~~~ 233 (275)
T cd06608 159 VSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPM---RALFK--IPRN 233 (275)
T ss_pred cceecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchH---HHHHH--hhcc
Confidence 99865443333344678999999993 45799999999999999999997532110 00000 0010
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 612 LDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
..+... ........+.+++.+||..||++|||++|++++.|
T Consensus 234 ~~~~~~----~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~~~~ 274 (275)
T cd06608 234 PPPTLK----SPENWSKKFNDFISECLIKNYEQRPFMEELLEHPF 274 (275)
T ss_pred CCCCCC----chhhcCHHHHHHHHHHhhcChhhCcCHHHHhcCCC
Confidence 111111 11112235678888999999999999999998765
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I |
| >cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=263.64 Aligned_cols=234 Identities=18% Similarity=0.238 Sum_probs=162.2
Q ss_pred cceeecc--cCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEe
Q 042735 426 KYCIGSG--RHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEY 502 (667)
Q Consensus 426 ~~~lg~g--~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey 502 (667)
..+||+| +||+||++.. .+++.||+|++...... ....+.+.+|+++++.++|||||++++++..++..++||||
T Consensus 3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 80 (327)
T cd08227 3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACT--NEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSF 80 (327)
T ss_pred hhhccccccceEEEEEEeecccCcEEEEEEechhhcc--HHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEec
Confidence 4578999 6889999976 56888999998653221 22345677899999999999999999999999999999999
Q ss_pred cCCCChHHHhcccc---C-----------------------CcccccccCCeeecCCCceEEecccccccccCCCC----
Q 042735 503 LKRGSLATNLSNDA---A-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS---- 552 (667)
Q Consensus 503 ~~~g~L~~~l~~~~---~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~---- 552 (667)
+++|+|.+.+.... . ..|.||||+||+++.++.++++|||.+........
T Consensus 81 ~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~ 160 (327)
T cd08227 81 MAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRV 160 (327)
T ss_pred cCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccchhhccccccccccc
Confidence 99999988774311 0 11349999999999999999999987543321111
Q ss_pred ---CcccccccccccCCC--------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhcccc---------
Q 042735 553 ---NWSALVGTYRYVAPD--------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML--------- 612 (667)
Q Consensus 553 ---~~~~~~Gt~~y~aPE--------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~--------- 612 (667)
......++..|+||| |+.++|||||||++|||+||+.||.....................
T Consensus 161 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (327)
T cd08227 161 VHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPAEE 240 (327)
T ss_pred cccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHHHHHHhcCCccccccccchhhhh
Confidence 112235778899999 346899999999999999999998632110000000000000000
Q ss_pred ----------CC----------CCCCC-----CCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 613 ----------DP----------RLPPP-----SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 613 ----------~~----------~~~~~-----~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
+. ..+.. .+........+.+++.+||+.||++|||++|++++.||....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~~p~f~~~~ 314 (327)
T cd08227 241 LTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIK 314 (327)
T ss_pred cccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhcChhhhhcc
Confidence 00 00000 000011123567889999999999999999999999997543
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype |
| >cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-29 Score=252.28 Aligned_cols=216 Identities=24% Similarity=0.361 Sum_probs=155.8
Q ss_pred eeecccCeEEEEEEeCC-Cc--eEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceEEEEEec
Q 042735 428 CIGSGRHGSVYRAELPS-KE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSILIYEYL 503 (667)
Q Consensus 428 ~lg~g~~g~vy~~~~~~-~~--~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~lv~ey~ 503 (667)
.||+|+||.||+|...+ +. .+++|.+.... .....+.+.+|++++.++ +||||+++++++...+..++||||+
T Consensus 2 ~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~ 78 (270)
T cd05047 2 VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA---SKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYA 78 (270)
T ss_pred cCCCCCCceEEEEEEcCCCCeeEEEEEEccccC---CHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeC
Confidence 58999999999998754 33 46788765322 123345789999999999 7999999999999999999999999
Q ss_pred CCCChHHHhccccC----------------------------------------CcccccccCCeeecCCCceEEecccc
Q 042735 504 KRGSLATNLSNDAA----------------------------------------AEELDISSKNVLLDLEHKAHVSDFGI 543 (667)
Q Consensus 504 ~~g~L~~~l~~~~~----------------------------------------~~~~dlk~~NiLld~~~~~kl~DFGl 543 (667)
++|+|.+++..... ..|.||||+||++++++.+|++|||+
T Consensus 79 ~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~~~~kl~dfgl 158 (270)
T cd05047 79 PHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGL 158 (270)
T ss_pred CCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEEEcCCCeEEECCCCC
Confidence 99999988753210 11239999999999999999999999
Q ss_pred cccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCC
Q 042735 544 AKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRL 616 (667)
Q Consensus 544 a~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (667)
++....... ......+..|+||| ++.++|||||||++|||+| |+.||..... ...... .........
T Consensus 159 ~~~~~~~~~-~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~----~~~~~~-~~~~~~~~~ 232 (270)
T cd05047 159 SRGQEVYVK-KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC----AELYEK-LPQGYRLEK 232 (270)
T ss_pred ccccchhhh-ccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCH----HHHHHH-HhCCCCCCC
Confidence 864321111 11223456799999 3568999999999999997 9999753211 111110 000001111
Q ss_pred CCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
+.. ....+.+++.+||+.+|.+|||++|+++.|...
T Consensus 233 ~~~------~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~ 268 (270)
T cd05047 233 PLN------CDDEVYDLMRQCWREKPYERPSFAQILVSLNRM 268 (270)
T ss_pred CCc------CCHHHHHHHHHHcccChhhCCCHHHHHHHHHHh
Confidence 111 112466888999999999999999999998653
|
Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l |
| >cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-29 Score=251.39 Aligned_cols=216 Identities=26% Similarity=0.430 Sum_probs=160.1
Q ss_pred ceeecccCeEEEEEEeCC--C--ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEe
Q 042735 427 YCIGSGRHGSVYRAELPS--K--EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEY 502 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~~--~--~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey 502 (667)
+.||+|++|.||+|.+.. + ..+|+|.+...... ...+.|.+|++++++++|||||++++++.+ ...++||||
T Consensus 1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~ 76 (257)
T cd05040 1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLS---DIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTEL 76 (257)
T ss_pred CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccH---HHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEe
Confidence 358999999999998643 2 25899988654322 445689999999999999999999999988 889999999
Q ss_pred cCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC---
Q 042735 503 LKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--- 553 (667)
Q Consensus 503 ~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~--- 553 (667)
+++|+|.+.+..... ..|.||||+||+++.++.+||+|||+++........
T Consensus 77 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~ 156 (257)
T cd05040 77 APLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVM 156 (257)
T ss_pred cCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEeccccccccccccccceec
Confidence 999999988754320 113399999999999999999999999876542221
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....++..|+||| ++.++|||||||++|||+| |+.||...... ...... .. .....+.+ . ..
T Consensus 157 ~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~----~~~~~~-~~-~~~~~~~~-~---~~ 226 (257)
T cd05040 157 EEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGS----QILKKI-DK-EGERLERP-E---AC 226 (257)
T ss_pred ccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHH----HHHHHH-Hh-cCCcCCCC-c---cC
Confidence 12345788999999 3568999999999999999 99997532211 111100 00 01111111 1 11
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
...+.+++.+||+.+|++|||++|+++.|.
T Consensus 227 ~~~~~~li~~~l~~~p~~Rps~~~~~~~l~ 256 (257)
T cd05040 227 PQDIYNVMLQCWAHNPADRPTFAALREFLP 256 (257)
T ss_pred CHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence 235677888999999999999999998874
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and |
| >KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-31 Score=295.10 Aligned_cols=225 Identities=27% Similarity=0.411 Sum_probs=171.0
Q ss_pred cCCcCcceeecccCeEEEEEE-eCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
-++.....||.|.||.||-|. ...|+..|||.+.-.... ....+...+|+.++..+.|||+|++||+-.+.+..+|.
T Consensus 1235 ~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~--~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IF 1312 (1509)
T KOG4645|consen 1235 FRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSD--HKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIF 1312 (1509)
T ss_pred eeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccc--cccCcchHHHHHHHHhccCccccccCceeecHHHHHHH
Confidence 455666789999999999996 567888999987643222 23345678999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccCCc------------------------ccccccCCeeecCCCceEEecccccccccCCCC---
Q 042735 500 YEYLKRGSLATNLSNDAAAE------------------------ELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS--- 552 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~~~------------------------~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~--- 552 (667)
||||++|+|++.+...++.. |.|+||.||+||.+|.+|++|||.|..+.....
T Consensus 1313 MEyC~~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~ 1392 (1509)
T KOG4645|consen 1313 MEYCEGGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMP 1392 (1509)
T ss_pred HHHhccCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeeecCCcEEeecccceeEecCchhcCC
Confidence 99999999999887654322 349999999999999999999999987765421
Q ss_pred -CcccccccccccCCCC---------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCc
Q 042735 553 -NWSALVGTYRYVAPDY---------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622 (667)
Q Consensus 553 -~~~~~~Gt~~y~aPE~---------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (667)
......||+.|||||. ..++||||+|||++||+||++||...+..+. +-..+....-|.+|..
T Consensus 1393 ~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~a----IMy~V~~gh~Pq~P~~--- 1465 (1509)
T KOG4645|consen 1393 GELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNEWA----IMYHVAAGHKPQIPER--- 1465 (1509)
T ss_pred HHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccchhH----HHhHHhccCCCCCchh---
Confidence 1234689999999993 2468999999999999999999874332211 1111111222333322
Q ss_pred hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 623 VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 623 ~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
-..+-.+++.+|++.||++|.++.|++++-+.
T Consensus 1466 ---ls~~g~dFle~Cl~~dP~~Rw~~~qlle~~f~ 1497 (1509)
T KOG4645|consen 1466 ---LSSEGRDFLEHCLEQDPKMRWTASQLLEHAFG 1497 (1509)
T ss_pred ---hhHhHHHHHHHHHhcCchhhhHHHHHHHhhcc
Confidence 22234578889999999999999999987553
|
|
| >cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-29 Score=250.19 Aligned_cols=216 Identities=28% Similarity=0.453 Sum_probs=160.3
Q ss_pred ceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCCC
Q 042735 427 YCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRG 506 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~g 506 (667)
+.||+|+||.||+|...++..+|+|++...... ...+.|.+|++++++++||||+++++++.+....++||||++++
T Consensus 1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~ 77 (251)
T cd05041 1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPP---DLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGG 77 (251)
T ss_pred CccccCCCceEEEEEEeCCCcEEEEeccccCCH---HHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCC
Confidence 368999999999998876889999987654321 34567999999999999999999999999999999999999999
Q ss_pred ChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCc--ccccc
Q 042735 507 SLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW--SALVG 559 (667)
Q Consensus 507 ~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~--~~~~G 559 (667)
+|.+++..... ..|.|+||+||+++.++.+||+|||+++......... ....+
T Consensus 78 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~ 157 (251)
T cd05041 78 SLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQI 157 (251)
T ss_pred cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcc
Confidence 99888743211 1123999999999999999999999998654221110 11234
Q ss_pred cccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHH
Q 042735 560 TYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632 (667)
Q Consensus 560 t~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (667)
+..|+||| ++.++|||||||++|||+| |..||..... .......... ...+. +. .....+.+
T Consensus 158 ~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~-----~~~~~~~~~~--~~~~~--~~--~~~~~~~~ 226 (251)
T cd05041 158 PIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSN-----QQTRERIESG--YRMPA--PQ--LCPEEIYR 226 (251)
T ss_pred eeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCH-----HHHHHHHhcC--CCCCC--Cc--cCCHHHHH
Confidence 56799999 4668999999999999999 7888643221 1111111110 11111 11 12235778
Q ss_pred HHHhccccCCCCCCCHHHHHHHHH
Q 042735 633 VAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 633 ~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
++.+||..+|++|||++|+++.|.
T Consensus 227 li~~~l~~~p~~Rp~~~ell~~l~ 250 (251)
T cd05041 227 LMLQCWAYDPENRPSFSEIYNELQ 250 (251)
T ss_pred HHHHHhccChhhCcCHHHHHHHhh
Confidence 899999999999999999998874
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k |
| >cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-29 Score=250.29 Aligned_cols=216 Identities=25% Similarity=0.427 Sum_probs=160.8
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEE-eCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCS-HARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~-~~~~~~lv 499 (667)
.+|...+.||+|+||.||+|... +..+|+|..... ...+.|.+|+.++++++|||+++++|++. +....++|
T Consensus 6 ~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~------~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv 78 (256)
T cd05082 6 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV 78 (256)
T ss_pred HhCeeeeeecccCCCeEEEEEEc-CCcEEEEEeCCC------chHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEE
Confidence 47788899999999999999775 566899987532 12356899999999999999999999765 45678999
Q ss_pred EEecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 500 YEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
|||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++......
T Consensus 79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~-- 156 (256)
T cd05082 79 TEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-- 156 (256)
T ss_pred EECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCccceeccccC--
Confidence 999999999988754321 1133999999999999999999999998654322
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
....++..|+||| ++.++|||||||++|||++ |+.|+..... .... ........+..+.. .
T Consensus 157 -~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~----~~~~-~~~~~~~~~~~~~~------~ 224 (256)
T cd05082 157 -DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL----KDVV-PRVEKGYKMDAPDG------C 224 (256)
T ss_pred -CCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCH----HHHH-HHHhcCCCCCCCCC------C
Confidence 2334567899999 4668999999999999998 9988753211 0111 11111111111111 1
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
...+.+++.+||+.+|++|||++++.+.|..
T Consensus 225 ~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~ 255 (256)
T cd05082 225 PPVVYDVMKQCWHLDAATRPSFLQLREQLEH 255 (256)
T ss_pred CHHHHHHHHHHhcCChhhCcCHHHHHHHHhc
Confidence 2356788889999999999999999988753
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re |
| >cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=258.73 Aligned_cols=235 Identities=19% Similarity=0.243 Sum_probs=164.3
Q ss_pred HHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
++++|...+.||+|+||.||+|.. .++..+|+|.+...... .....+.+|++++++++|+||+++++++..++..+
T Consensus 3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 79 (291)
T cd07870 3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEE---GVPFTAIREASLLKGLKHANIVLLHDIIHTKETLT 79 (291)
T ss_pred ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcC---CCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEE
Confidence 346788899999999999999976 46788999987643221 11235778999999999999999999999999999
Q ss_pred EEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 498 LIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
+||||+. +++.+.+.... ...|.||||+||+++.++.+||+|||+++.......
T Consensus 80 lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~ 158 (291)
T cd07870 80 FVFEYMH-TDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQ 158 (291)
T ss_pred EEEeccc-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCCcEEEeccccccccCCCCC
Confidence 9999996 66655543211 112349999999999999999999999986543333
Q ss_pred CcccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCC------------Chhhh------hhh
Q 042735 553 NWSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILP------------SPSVI------NMR 607 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~------------~~~~~------~~~ 607 (667)
......+++.|+|||+ +.++|||||||++|||+||+.||........ ..... ...
T Consensus 159 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (291)
T cd07870 159 TYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNY 238 (291)
T ss_pred CCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcccc
Confidence 3334568999999994 3468999999999999999999863321100 00000 000
Q ss_pred hccccCCCCCCCCCc---hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 608 LDEMLDPRLPPPSPD---VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 608 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..+......+..... .......+.+++.+|++.||++|||++|++.+.||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~h~~~ 291 (291)
T cd07870 239 KPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALLHPYF 291 (291)
T ss_pred cchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhcCCCC
Confidence 000000000000000 00012356678899999999999999999988764
|
Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess |
| >cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-29 Score=252.92 Aligned_cols=226 Identities=22% Similarity=0.310 Sum_probs=163.0
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCC-chHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC--Cce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPS-DQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA--RHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~-~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~--~~~ 496 (667)
.+|+..+.||+|+||.||+|.. .++..+|+|.+...... ......+.+.+|++++++++||||+++++++.+. ...
T Consensus 2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 81 (265)
T cd06652 2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL 81 (265)
T ss_pred CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence 4688889999999999999976 45788999987532221 1223345788999999999999999999998764 467
Q ss_pred EEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCC-
Q 042735 497 ILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS- 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~- 551 (667)
++||||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++......
T Consensus 82 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~ 161 (265)
T cd06652 82 SIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICL 161 (265)
T ss_pred EEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCccccccccccc
Confidence 899999999999987743211 1133999999999999999999999998654211
Q ss_pred --CCcccccccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 552 --SNWSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 552 --~~~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
.......||..|+|||. +.++|||||||++|||++|+.||..... ...... ....+..+. .+.
T Consensus 162 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~----~~~~~~---~~~~~~~~~-~~~- 232 (265)
T cd06652 162 SGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEA----MAAIFK---IATQPTNPV-LPP- 232 (265)
T ss_pred cccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccch----HHHHHH---HhcCCCCCC-Cch-
Confidence 12234568999999993 5689999999999999999999753211 111110 111111111 111
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.....+.+++.+|+. +|++||+++||+++.|.
T Consensus 233 -~~~~~~~~~i~~~l~-~p~~Rp~~~~il~~~~~ 264 (265)
T cd06652 233 -HVSDHCRDFLKRIFV-EAKLRPSADELLRHTFV 264 (265)
T ss_pred -hhCHHHHHHHHHHhc-ChhhCCCHHHHhcCccc
Confidence 112245567778885 89999999999988663
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re |
| >cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-30 Score=269.56 Aligned_cols=236 Identities=20% Similarity=0.319 Sum_probs=165.8
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC-----
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA----- 493 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~----- 493 (667)
.++|...+.||+|+||.||+|.. ..++.+|||++...... ....+.+.+|+.+++.++||||+++++++...
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~ 100 (364)
T cd07875 23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQN--QTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEE 100 (364)
T ss_pred hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccC--chhHHHHHHHHHHHHhcCCCCccccceeecccccccc
Confidence 56899999999999999999975 45788999998654322 22345688999999999999999999987543
Q ss_pred -CceEEEEEecCCCChHHHhccc----------------------cCCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 494 -RHSILIYEYLKRGSLATNLSND----------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 494 -~~~~lv~ey~~~g~L~~~l~~~----------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
...++||||+++ ++.+.+... ....|.||||+||+++.++.+||+|||+++.....
T Consensus 101 ~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~ 179 (364)
T cd07875 101 FQDVYIVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS 179 (364)
T ss_pred cCeEEEEEeCCCC-CHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCCcEEEEeCCCccccCCC
Confidence 357999999986 554433211 12235599999999999999999999999865432
Q ss_pred CCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC-----------CChhhhhh---hhcc
Q 042735 551 SSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL-----------PSPSVINM---RLDE 610 (667)
Q Consensus 551 ~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~-----------~~~~~~~~---~~~~ 610 (667)
...+...||+.|+||| |+.++|||||||++|||+||+.||....... +.+..... ....
T Consensus 180 -~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (364)
T cd07875 180 -FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRT 258 (364)
T ss_pred -CcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHH
Confidence 2234467999999999 5778999999999999999999986322110 00000000 0000
Q ss_pred ccC--CCC--------------CCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 611 MLD--PRL--------------PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 611 ~~~--~~~--------------~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
... +.. +............+.+++.+|++.||++|||+.|++++.|+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~hp~~~~ 323 (364)
T cd07875 259 YVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV 323 (364)
T ss_pred HHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcCccccc
Confidence 000 000 0000000001235678899999999999999999999998853
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=254.78 Aligned_cols=224 Identities=22% Similarity=0.445 Sum_probs=164.5
Q ss_pred CCcCcceeecccCeEEEEEEeCC--CceEEEEecCCCCCC------chHHhHHHHHHHHHHHHh-cCCCCeeEEEEEEEe
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPS--KEFLAVKKFNSPLPS------DQIADQKEFFAEIEALTK-IRHRNIVKFYGFCSH 492 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~--~~~~avk~~~~~~~~------~~~~~~~~~~~E~~~l~~-l~H~niv~~~g~~~~ 492 (667)
+|+..+.||+|+||.||+|.... +..+|+|.+...... .......++.+|+.++.+ ++||||+++++++.+
T Consensus 1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~ 80 (269)
T cd08528 1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE 80 (269)
T ss_pred CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence 36677889999999999998755 678999987532111 112234567889998875 799999999999999
Q ss_pred CCceEEEEEecCCCChHHHhccc-----------------------------cCCcccccccCCeeecCCCceEEecccc
Q 042735 493 ARHSILIYEYLKRGSLATNLSND-----------------------------AAAEELDISSKNVLLDLEHKAHVSDFGI 543 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~-----------------------------~~~~~~dlk~~NiLld~~~~~kl~DFGl 543 (667)
.+..++||||+++++|.+.+... ....|.||||+||+++.++.+||+|||+
T Consensus 81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~~~~l~dfg~ 160 (269)
T cd08528 81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGL 160 (269)
T ss_pred CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECCCCcEEEecccc
Confidence 99999999999999998765210 1112449999999999999999999999
Q ss_pred cccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCC
Q 042735 544 AKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617 (667)
Q Consensus 544 a~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (667)
+....... ......|+..|+||| ++.++|||||||++|||++|+.|+...... .... ...+....
T Consensus 161 ~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~----~~~~----~~~~~~~~ 231 (269)
T cd08528 161 AKQKQPES-KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNML----SLAT----KIVEAVYE 231 (269)
T ss_pred eeeccccc-ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCHH----HHHH----HHhhccCC
Confidence 98755433 334567899999999 356899999999999999999997532211 0111 11111111
Q ss_pred CCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
+.... .....+.+++.+||+.||++||++.|+..++.
T Consensus 232 ~~~~~--~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~ 268 (269)
T cd08528 232 PLPEG--MYSEDVTDVITSCLTPDAEARPDIIQVSAMIS 268 (269)
T ss_pred cCCcc--cCCHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence 11110 11235677888999999999999999998874
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. |
| >cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-29 Score=250.22 Aligned_cols=215 Identities=27% Similarity=0.496 Sum_probs=163.2
Q ss_pred ceeecccCeEEEEEEeCC----CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEe
Q 042735 427 YCIGSGRHGSVYRAELPS----KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEY 502 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~~----~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey 502 (667)
+.||+|+||.||+|.... +..+++|.+...... ...+.+.+|++.+++++||||+++++++......++||||
T Consensus 1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~ 77 (262)
T cd00192 1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASE---EERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEY 77 (262)
T ss_pred CccccCCceEEEEEEEecCCCCCceEEeEeeccccch---hHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEe
Confidence 368999999999998653 778999988654322 1356789999999999999999999999999999999999
Q ss_pred cCCCChHHHhccc---------cC------------------------CcccccccCCeeecCCCceEEecccccccccC
Q 042735 503 LKRGSLATNLSND---------AA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 503 ~~~g~L~~~l~~~---------~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~ 549 (667)
+++|+|.+++... .. ..|.||||+||+++.++.+||+|||.++....
T Consensus 78 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~ 157 (262)
T cd00192 78 MEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYD 157 (262)
T ss_pred ccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEEccccccccccc
Confidence 9999999988653 11 01239999999999999999999999987654
Q ss_pred CC--CCcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCC
Q 042735 550 DS--SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620 (667)
Q Consensus 550 ~~--~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (667)
.. .......+++.|+||| ++.++||||+||++|||++ |+.||..... ...... .........+...
T Consensus 158 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~----~~~~~~-~~~~~~~~~~~~~ 232 (262)
T cd00192 158 DDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSN----EEVLEY-LRKGYRLPKPEYC 232 (262)
T ss_pred ccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCH----HHHHHH-HHcCCCCCCCccC
Confidence 32 1223456788999999 4668999999999999999 6888764321 111111 1111111111111
Q ss_pred CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHH
Q 042735 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655 (667)
Q Consensus 621 ~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l 655 (667)
..++.+++.+||..+|++|||+.|+++++
T Consensus 233 ------~~~~~~li~~~l~~~p~~Rps~~~l~~~l 261 (262)
T cd00192 233 ------PDELYELMLSCWQLDPEDRPTFSELVERL 261 (262)
T ss_pred ------ChHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence 23567888899999999999999999876
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan |
| >cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-29 Score=261.90 Aligned_cols=159 Identities=20% Similarity=0.354 Sum_probs=123.1
Q ss_pred ceeecccCeEEEEEEeCC---CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe--CCceEEEEE
Q 042735 427 YCIGSGRHGSVYRAELPS---KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH--ARHSILIYE 501 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~~---~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~--~~~~~lv~e 501 (667)
..||+|+||.||+|+..+ +..+|+|.+.... ....+.+|++++++++|||||++++++.. ....++|||
T Consensus 7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e 80 (317)
T cd07867 7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG------ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFD 80 (317)
T ss_pred eEeccCCCeeEEEEEecCCCccceEEEEEecCCC------CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEe
Confidence 579999999999998643 4679999875431 12357789999999999999999999854 457889999
Q ss_pred ecCCCChHHHhccc---------------------------------cCCcccccccCCeee----cCCCceEEeccccc
Q 042735 502 YLKRGSLATNLSND---------------------------------AAAEELDISSKNVLL----DLEHKAHVSDFGIA 544 (667)
Q Consensus 502 y~~~g~L~~~l~~~---------------------------------~~~~~~dlk~~NiLl----d~~~~~kl~DFGla 544 (667)
|+++ +|.+.+... ....|.||||+||++ +.++.+||+|||++
T Consensus 81 ~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a 159 (317)
T cd07867 81 YAEH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFA 159 (317)
T ss_pred eeCC-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccce
Confidence 9885 555443210 011234999999999 56789999999999
Q ss_pred ccccCCCC---CcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCC
Q 042735 545 KFLKPDSS---NWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRG 592 (667)
Q Consensus 545 ~~~~~~~~---~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~ 592 (667)
+....... ......||+.|+||| ++.++|||||||++|||+||++||.
T Consensus 160 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~ 217 (317)
T cd07867 160 RLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFH 217 (317)
T ss_pred eccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcc
Confidence 87643221 223457899999999 3567999999999999999999985
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as |
| >cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-29 Score=254.30 Aligned_cols=207 Identities=22% Similarity=0.384 Sum_probs=150.4
Q ss_pred eeecccCeEEEEEEeCC-------------------------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCC
Q 042735 428 CIGSGRHGSVYRAELPS-------------------------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482 (667)
Q Consensus 428 ~lg~g~~g~vy~~~~~~-------------------------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n 482 (667)
.||+|+||.||+|.... ...+++|.+... .......|.+|+.++++++|||
T Consensus 2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~----~~~~~~~~~~~~~~~~~l~h~n 77 (274)
T cd05076 2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPS----HRDIALAFFETASLMSQVSHIH 77 (274)
T ss_pred CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChH----HHHHHHHHHHHHHHHhcCCCCC
Confidence 58999999999996421 124788876532 1223457889999999999999
Q ss_pred eeEEEEEEEeCCceEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCC---
Q 042735 483 IVKFYGFCSHARHSILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEH--- 534 (667)
Q Consensus 483 iv~~~g~~~~~~~~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~--- 534 (667)
||+++|++.+....++||||+++|+|..++.... ...|.||||+||+++..+
T Consensus 78 iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~ 157 (274)
T cd05076 78 LAFVHGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAE 157 (274)
T ss_pred eeeEEEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCccc
Confidence 9999999999999999999999999988775421 112349999999998654
Q ss_pred ----ceEEecccccccccCCCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHH-hCCCCCCCCccCCCChh
Q 042735 535 ----KAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPS 602 (667)
Q Consensus 535 ----~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~Ell-tG~~p~~~~~~~~~~~~ 602 (667)
.+|++|||++...... ....|+..|+||| ++.++|||||||++|||+ +|+.|+..... ..
T Consensus 158 ~~~~~~kl~d~g~~~~~~~~----~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~----~~ 229 (274)
T cd05076 158 GTSPFIKLSDPGVSFTALSR----EERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTP----SE 229 (274)
T ss_pred CccceeeecCCccccccccc----cccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccCh----HH
Confidence 3799999998654322 2235788999999 355799999999999995 78888753211 00
Q ss_pred hhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHH
Q 042735 603 VINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655 (667)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l 655 (667)
. ...... ....+.+. ...+.+++.+||+.+|++||||.+|++.|
T Consensus 230 ~-~~~~~~--~~~~~~~~------~~~~~~li~~cl~~~p~~Rps~~~il~~L 273 (274)
T cd05076 230 K-ERFYEK--KHRLPEPS------CKELATLISQCLTYEPTQRPSFRTILRDL 273 (274)
T ss_pred H-HHHHHh--ccCCCCCC------ChHHHHHHHHHcccChhhCcCHHHHHHhh
Confidence 0 000000 11122211 12467888899999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt |
| >cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-30 Score=268.23 Aligned_cols=234 Identities=22% Similarity=0.275 Sum_probs=168.0
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|+.. +++.+|+|.+..... ........+.+|+.++..++||||+++++++.+.+..|+|
T Consensus 1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv 79 (331)
T cd05624 1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEM-LKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLV 79 (331)
T ss_pred CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHH-HhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEE
Confidence 46888899999999999999864 567899998754211 1122344588899999999999999999999999999999
Q ss_pred EEecCCCChHHHhccc--cC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCC-C
Q 042735 500 YEYLKRGSLATNLSND--AA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-N 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~--~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~ 553 (667)
|||+++|+|.+++... .. ..|.||||+|||++.++.+||+|||+++....... .
T Consensus 80 ~Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~ 159 (331)
T cd05624 80 MDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQ 159 (331)
T ss_pred EeCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCCCEEEEeccceeeccCCCcee
Confidence 9999999999887541 11 11349999999999999999999999986654322 2
Q ss_pred cccccccccccCCC-----------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCc
Q 042735 554 WSALVGTYRYVAPD-----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE-----------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (667)
....+||+.||||| ++.++|||||||++|||+||+.||...... ...............+.....
T Consensus 160 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~----~~~~~i~~~~~~~~~p~~~~~ 235 (331)
T cd05624 160 SSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLV----ETYGKIMNHEERFQFPSHITD 235 (331)
T ss_pred eccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCHH----HHHHHHHcCCCcccCCCcccc
Confidence 23457999999999 245799999999999999999998532210 111100000001111211111
Q ss_pred hHHHHHHHHHHHHhccccCCCC--CCCHHHHHHHHHHhhhhh
Q 042735 623 VQGKLISIMEVAFSCLDVSPES--RPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 623 ~~~~~~~~~~~~~~Cl~~~p~~--RPt~~ev~~~l~~~~~~~ 662 (667)
....+.+++.+|+..++++ |+++++++++.||....|
T Consensus 236 ---~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h~~f~~~~~ 274 (331)
T cd05624 236 ---VSEEAKDLIQRLICSRERRLGQNGIEDFKKHAFFEGIDW 274 (331)
T ss_pred ---CCHHHHHHHHHHccCchhhcCCCCHHHHhcCCCcCCCCH
Confidence 1234566777888765544 579999999998876544
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. |
| >cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=257.22 Aligned_cols=224 Identities=23% Similarity=0.342 Sum_probs=167.9
Q ss_pred CcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|...+.||+|++|.||+|.. .++..+++|++.... ....+.+.+|+.++++++||||+++++++..++..++|+|
T Consensus 21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~----~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e 96 (285)
T cd06648 21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRK----QQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVME 96 (285)
T ss_pred hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccc----hhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEe
Confidence 44457899999999999975 567889999875321 1234568899999999999999999999999999999999
Q ss_pred ecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccccc
Q 042735 502 YLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV 558 (667)
Q Consensus 502 y~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~ 558 (667)
|+++++|.+.+..... ..|.||||+||+++.++.+|++|||+++.............
T Consensus 97 ~~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~ 176 (285)
T cd06648 97 FLEGGALTDIVTHTRMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLV 176 (285)
T ss_pred ccCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccchhhccCCccccccc
Confidence 9999999987754221 11349999999999999999999999876544333333457
Q ss_pred ccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHH
Q 042735 559 GTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632 (667)
Q Consensus 559 Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (667)
|++.|+||| ++.++|||||||++|||++|+.||..... ............+..... . .....+.+
T Consensus 177 ~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~-~---~~~~~l~~ 247 (285)
T cd06648 177 GTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPP-----LQAMKRIRDNLPPKLKNL-H---KVSPRLRS 247 (285)
T ss_pred CCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCH-----HHHHHHHHhcCCCCCccc-c---cCCHHHHH
Confidence 899999999 46789999999999999999999753211 000011111111111111 0 11235778
Q ss_pred HHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 633 VAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 633 ~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
++.+||+.+|++|||+.+++++.++..
T Consensus 248 li~~~l~~~p~~Rpt~~~il~~~~~~~ 274 (285)
T cd06648 248 FLDRMLVRDPAQRATAAELLNHPFLAK 274 (285)
T ss_pred HHHHHcccChhhCcCHHHHccCccccc
Confidence 889999999999999999999888754
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun |
| >cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=259.45 Aligned_cols=233 Identities=21% Similarity=0.295 Sum_probs=163.8
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|++|.||+|+.. ++..+|||++....... ...+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 78 (284)
T cd07860 1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE--GVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF 78 (284)
T ss_pred CceeeeeecCCCceEEEEEEECCCCCEEEEEEcccccccc--ccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEe
Confidence 4778889999999999999764 67889999886433221 22346889999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 501 EYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||+. ++|..++.... ...|.||+|+||+++.++.+||+|||+++.........
T Consensus 79 e~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~~ 157 (284)
T cd07860 79 EFLH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTY 157 (284)
T ss_pred eccc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccchhhcccCcccc
Confidence 9996 57776654311 11234999999999999999999999998664433333
Q ss_pred ccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh----------hhcccc--CCC
Q 042735 555 SALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM----------RLDEML--DPR 615 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~----------~~~~~~--~~~ 615 (667)
....+++.|+|||+ +.++|||||||++|||+||+.||............... ...... ...
T Consensus 158 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (284)
T cd07860 158 THEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPS 237 (284)
T ss_pred ccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhh
Confidence 44567899999992 45799999999999999999997532211000000000 000000 000
Q ss_pred CCCCCCc-h----HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 616 LPPPSPD-V----QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 616 ~~~~~~~-~----~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.+..... . ......+.+++.+||+.||++|||++|++++.||
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~f 284 (284)
T cd07860 238 FPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALAHPFF 284 (284)
T ss_pred cccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhcCCCC
Confidence 0000000 0 0011245678899999999999999999988765
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex |
| >cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-29 Score=249.70 Aligned_cols=218 Identities=25% Similarity=0.404 Sum_probs=154.8
Q ss_pred ceeecccCeEEEEEEeCC----CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe-CCceEEEEE
Q 042735 427 YCIGSGRHGSVYRAELPS----KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH-ARHSILIYE 501 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~~----~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~-~~~~~lv~e 501 (667)
+.||+|+||.||+|...+ ...+|+|++.... .....+.+.+|+.++++++||||+++++++.. ++..++|||
T Consensus 1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e 77 (262)
T cd05058 1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRIT---DLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLP 77 (262)
T ss_pred CcccccCCceEEEEEEecCCCceEEEEEEecCccC---CHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEe
Confidence 368999999999997532 3468999875321 22334678899999999999999999998764 556889999
Q ss_pred ecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCC----C
Q 042735 502 YLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS----S 552 (667)
Q Consensus 502 y~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~----~ 552 (667)
|+++|+|.+++..... ..|.||||+|||++.++.+||+|||+++...... .
T Consensus 78 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~ 157 (262)
T cd05058 78 YMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVH 157 (262)
T ss_pred cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCccccccccCCcceeec
Confidence 9999999988753211 1134999999999999999999999998653221 1
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCC-CCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGK-HPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
......++..|+||| ++.++|||||||++|||+||+ +|+..... .... ........+.....
T Consensus 158 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~--- 226 (262)
T cd05058 158 NHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDS----FDIT----VYLLQGRRLLQPEY--- 226 (262)
T ss_pred ccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCH----HHHH----HHHhcCCCCCCCCc---
Confidence 112334677899999 356899999999999999964 45432110 0111 11111111111111
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
....+.+++.+||+.+|++||++.||++.+...
T Consensus 227 ~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~ 259 (262)
T cd05058 227 CPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQI 259 (262)
T ss_pred CCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 122467888999999999999999999988754
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca |
| >cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-29 Score=251.58 Aligned_cols=223 Identities=28% Similarity=0.528 Sum_probs=162.8
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-C---ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-K---EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-~---~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
.+|...+.||+|+||.||+|.... + ..+|||.+..... ....++|..|++++++++||||+++++++.++...
T Consensus 4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 80 (269)
T cd05065 4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYT---EKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPV 80 (269)
T ss_pred HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCC---HHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCce
Confidence 456778899999999999998643 3 3599998765321 23456799999999999999999999999999999
Q ss_pred EEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
++||||+++|+|.+++..... ..|.||||+||+++.++.+|++|||+++......
T Consensus 81 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~ 160 (269)
T cd05065 81 MIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDT 160 (269)
T ss_pred EEEEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCccccccccCc
Confidence 999999999999887754211 1133999999999999999999999998654322
Q ss_pred CC--cc-cccc--cccccCCCC------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCC
Q 042735 552 SN--WS-ALVG--TYRYVAPDY------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619 (667)
Q Consensus 552 ~~--~~-~~~G--t~~y~aPE~------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (667)
.. .. ...| +..|+|||+ +.++|||||||++||+++ |+.||..... ..... ..... ...+.+
T Consensus 161 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~----~~~~~-~i~~~--~~~~~~ 233 (269)
T cd05065 161 SDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSN----QDVIN-AIEQD--YRLPPP 233 (269)
T ss_pred cccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCH----HHHHH-HHHcC--CcCCCc
Confidence 11 11 1112 457999993 668999999999999887 9999753221 11111 11111 111111
Q ss_pred CCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 620 ~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.+ ....+.+++.+||+.+|++||++++|+..+..
T Consensus 234 -~~---~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 267 (269)
T cd05065 234 -MD---CPTALHQLMLDCWQKDRNARPKFGQIVSTLDK 267 (269)
T ss_pred -cc---CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHh
Confidence 11 12346678889999999999999999988653
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr |
| >cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-29 Score=251.19 Aligned_cols=223 Identities=26% Similarity=0.374 Sum_probs=166.0
Q ss_pred CcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCC-chHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPS-DQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~-~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
|...+.||+|+||.||+|... ++..+++|.+...... ......+.+.+|++++++++||||+++++++...+..++||
T Consensus 2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~ 81 (258)
T cd06632 2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFL 81 (258)
T ss_pred ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEE
Confidence 566788999999999999875 6888999987543211 11233467899999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 501 EYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
||+++++|.+++..... ..|.||||+||+++.++.+||+|||+++...... ....
T Consensus 82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~-~~~~ 160 (258)
T cd06632 82 ELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFS-FAKS 160 (258)
T ss_pred EecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceeccccc-cccc
Confidence 99999999888754321 1234999999999999999999999998754332 2234
Q ss_pred ccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 557 LVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 557 ~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
..|++.|+||| ++.++|||||||++|||++|+.||..... ...... .......+..+... ...
T Consensus 161 ~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~---~~~~~~-~~~~~~~~~~~~~~------~~~ 230 (258)
T cd06632 161 FKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEG---VAAVFK-IGRSKELPPIPDHL------SDE 230 (258)
T ss_pred cCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcH---HHHHHH-HHhcccCCCcCCCc------CHH
Confidence 67899999999 35679999999999999999999863321 000100 00000011111111 124
Q ss_pred HHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 630 IMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
+.+++.+||+.+|++||++.+++++.+
T Consensus 231 ~~~li~~~l~~~p~~Rp~~~~~l~~~~ 257 (258)
T cd06632 231 AKDFILKCLQRDPSLRPTAAELLEHPF 257 (258)
T ss_pred HHHHHHHHhhcCcccCcCHHHHhcCCC
Confidence 567888999999999999999998754
|
Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops |
| >cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-29 Score=250.43 Aligned_cols=224 Identities=27% Similarity=0.420 Sum_probs=167.9
Q ss_pred CcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|...+.||+|+||.||+|... ++..+++|.+...... ....+.+.+|+.++++++|+||+++++++...+..++|+|
T Consensus 2 y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e 79 (264)
T cd06626 2 WQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDND--PKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFME 79 (264)
T ss_pred ceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccc--hHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEe
Confidence 667788999999999999864 6788999987654322 2345679999999999999999999999999999999999
Q ss_pred ecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC----
Q 042735 502 YLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN---- 553 (667)
Q Consensus 502 y~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~---- 553 (667)
|+++++|.+++..... ..|.||||+||+++.++.+||+|||++.........
T Consensus 80 ~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~ 159 (264)
T cd06626 80 YCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEE 159 (264)
T ss_pred cCCCCcHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCccccc
Confidence 9999999988765421 113399999999999999999999999876543221
Q ss_pred cccccccccccCCCC---------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchH
Q 042735 554 WSALVGTYRYVAPDY---------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE~---------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (667)
.....|++.|+|||+ +.++||||||+++||+++|+.||..... .............+..+...
T Consensus 160 ~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~----~~~~~~~~~~~~~~~~~~~~---- 231 (264)
T cd06626 160 VQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDN----EFQIMFHVGAGHKPPIPDSL---- 231 (264)
T ss_pred ccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcc----hHHHHHHHhcCCCCCCCccc----
Confidence 123568899999993 4579999999999999999999863321 11111111111112222211
Q ss_pred HHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
.....+.+++.+||+.+|++|||+.|++.+.|
T Consensus 232 ~~~~~~~~li~~~l~~~p~~R~~~~~i~~~~~ 263 (264)
T cd06626 232 QLSPEGKDFLDRCLESDPKKRPTASELLQHPF 263 (264)
T ss_pred ccCHHHHHHHHHHccCCcccCCCHHHHhcCCC
Confidence 11234567888999999999999999987654
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4 |
| >cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=259.51 Aligned_cols=234 Identities=19% Similarity=0.283 Sum_probs=163.8
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|++|.||+|..+ ++..+|+|.+...... .....+.+|++++++++||||+++++++.+.+..++
T Consensus 4 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l 80 (291)
T cd07844 4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEE---GAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTL 80 (291)
T ss_pred ccceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEeccccc---CCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEE
Confidence 367888899999999999999865 5788999987643221 112357789999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 499 IYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
||||+++ +|.+++.... ...|.||||+||+++.++.+||+|||+++........
T Consensus 81 v~e~~~~-~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~ 159 (291)
T cd07844 81 VFEYLDT-DLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSKT 159 (291)
T ss_pred EEecCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECccccccccCCCCcc
Confidence 9999985 8887664321 1123499999999999999999999999754322222
Q ss_pred cccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCC------------hhhhhh--hhcccc
Q 042735 554 WSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPS------------PSVINM--RLDEML 612 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~------------~~~~~~--~~~~~~ 612 (667)
.....++..|+||| ++.++|||||||++|||++|+.||......... ...... ......
T Consensus 160 ~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (291)
T cd07844 160 YSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFK 239 (291)
T ss_pred ccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhccccc
Confidence 23345788999999 345789999999999999999998532210000 000000 000000
Q ss_pred CCCCCCCCCc-------hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 613 DPRLPPPSPD-------VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 613 ~~~~~~~~~~-------~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
....+...+. .......+.+++.+|++.+|++|||+.|++++.||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~~~~f 291 (291)
T cd07844 240 PYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMKHPYF 291 (291)
T ss_pred cccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence 0000000000 00011356688899999999999999999988765
|
Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the |
| >cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-29 Score=251.18 Aligned_cols=222 Identities=26% Similarity=0.405 Sum_probs=165.1
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe--CCceEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH--ARHSIL 498 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~--~~~~~l 498 (667)
+|+..+.||+|+||.||+|.. .++..+|+|.+...... ....+.+.+|++++++++||||+++++++.. ....++
T Consensus 1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~ 78 (265)
T cd08217 1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMT--EKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYI 78 (265)
T ss_pred CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCC--HHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEE
Confidence 467788999999999999975 46788999987643222 2334678899999999999999999998764 446789
Q ss_pred EEEecCCCChHHHhccc---------------------------------cCCcccccccCCeeecCCCceEEecccccc
Q 042735 499 IYEYLKRGSLATNLSND---------------------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAK 545 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~---------------------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~ 545 (667)
+|||+++|+|.+.+... ....|.||||+||+++.++.+||+|||+++
T Consensus 79 ~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~ 158 (265)
T cd08217 79 VMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAK 158 (265)
T ss_pred EehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccc
Confidence 99999999998766321 112234999999999999999999999999
Q ss_pred cccCCCCCcccccccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCC
Q 042735 546 FLKPDSSNWSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619 (667)
Q Consensus 546 ~~~~~~~~~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (667)
.............|++.|+|||+ +.++|||||||++|||++|+.|+..... ..... .......+.++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~----~~~~~-~~~~~~~~~~~~- 232 (265)
T cd08217 159 ILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQ----LQLAS-KIKEGKFRRIPY- 232 (265)
T ss_pred cccCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCH----HHHHH-HHhcCCCCCCcc-
Confidence 77654432344678999999993 5679999999999999999999864321 11111 111111111111
Q ss_pred CCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 620 ~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
.....+.+++.+|++.+|++|||+.+|+++.+
T Consensus 233 -----~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~~~ 264 (265)
T cd08217 233 -----RYSSELNEVIKSMLNVDPDKRPSTEELLQLPL 264 (265)
T ss_pred -----ccCHHHHHHHHHHccCCcccCCCHHHHhhCCC
Confidence 11235678888999999999999999998754
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi |
| >cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-29 Score=254.02 Aligned_cols=232 Identities=27% Similarity=0.405 Sum_probs=165.2
Q ss_pred CCcCcceeecccCeEEEEEEeC-----CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe--CC
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH--AR 494 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-----~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~--~~ 494 (667)
+|...+.||+|+||.||+|.+. .+..+|||.+...... ...+.|.+|++++++++||||+++++++.. ..
T Consensus 5 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~---~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~ 81 (284)
T cd05038 5 HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEE---QHRSDFEREIEILRTLDHENIVKYKGVCEKPGGR 81 (284)
T ss_pred hchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccch---HHHHHHHHHHHHHHhCCCCChheEEeeeecCCCC
Confidence 4666788999999999999853 3578999998654321 345679999999999999999999999987 56
Q ss_pred ceEEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccC
Q 042735 495 HSILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~ 549 (667)
..++||||+++|+|.+++..... ..|.||||+||+++.++.+||+|||++.....
T Consensus 82 ~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~ 161 (284)
T cd05038 82 SLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLPE 161 (284)
T ss_pred ceEEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEccccccccccc
Confidence 78999999999999988754320 11339999999999999999999999987653
Q ss_pred CCCCc---ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCC-----hh-hhhhhhccccCC
Q 042735 550 DSSNW---SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPS-----PS-VINMRLDEMLDP 614 (667)
Q Consensus 550 ~~~~~---~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~-----~~-~~~~~~~~~~~~ 614 (667)
..... ....++..|+||| ++.++||||||+++|||+||+.|+......... .. .......+.+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (284)
T cd05038 162 DKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKE 241 (284)
T ss_pred CCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHc
Confidence 32211 1234556799999 356899999999999999999986532111000 00 000000011111
Q ss_pred CCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 615 RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
....+.+. ....++.+++.+||+.+|++||||+||++++..+
T Consensus 242 ~~~~~~~~--~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i 283 (284)
T cd05038 242 GERLPRPP--SCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL 283 (284)
T ss_pred CCcCCCCc--cCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence 11111111 1123577889999999999999999999998753
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut |
| >cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-29 Score=249.68 Aligned_cols=220 Identities=24% Similarity=0.466 Sum_probs=165.3
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|...+.||+|+||.||+|...++..+|||.+..... ..+++.+|+.++++++||||+++++++......++||
T Consensus 6 ~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 80 (261)
T cd05034 6 ESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTM-----SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVT 80 (261)
T ss_pred hheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCcc-----CHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEE
Confidence 57888899999999999999988888899998764321 2356899999999999999999999999989999999
Q ss_pred EecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC-
Q 042735 501 EYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN- 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~- 553 (667)
||+++|+|.+++..... ..|.||||+||+++.++.+|++|||+++........
T Consensus 81 e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~ 160 (261)
T cd05034 81 EYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTA 160 (261)
T ss_pred eccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECccccceeccchhhhh
Confidence 99999999988754210 112399999999999999999999999866432111
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....++..|+||| ++.++|||||||++||++| |+.||..... ....... ........+...
T Consensus 161 ~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~----~~~~~~~-~~~~~~~~~~~~------ 229 (261)
T cd05034 161 REGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTN----REVLEQV-ERGYRMPRPPNC------ 229 (261)
T ss_pred hhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH----HHHHHHH-HcCCCCCCCCCC------
Confidence 11223456899999 3668999999999999999 9999753211 1111111 111111111111
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
...+.+++.+|++.+|++||+++++.+.+.
T Consensus 230 ~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~ 259 (261)
T cd05034 230 PEELYDLMLQCWDKDPEERPTFEYLQSFLE 259 (261)
T ss_pred CHHHHHHHHHHcccCcccCCCHHHHHHHHh
Confidence 235678889999999999999999998764
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t |
| >cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=256.59 Aligned_cols=229 Identities=24% Similarity=0.393 Sum_probs=173.1
Q ss_pred HHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
..+.|+..+.||+|+||.||+|... ++..+++|++..... ..+.+.+|++++++++|||++++++++...+..+
T Consensus 17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-----~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~ 91 (286)
T cd06614 17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-----NKELIINEILIMKDCKHPNIVDYYDSYLVGDELW 91 (286)
T ss_pred ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-----hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEE
Confidence 3456777788999999999999875 578899998864321 3457889999999999999999999999999999
Q ss_pred EEEEecCCCChHHHhcccc--C-----------------------CcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 498 LIYEYLKRGSLATNLSNDA--A-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~--~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
+|+||+++++|.+.+.... . ..|.|+||+||+++.++.+||+|||++........
T Consensus 92 lv~e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~ 171 (286)
T cd06614 92 VVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKS 171 (286)
T ss_pred EEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchhhhhccchh
Confidence 9999999999998886542 1 11239999999999999999999999876544332
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
......|++.|+||| ++.++|||||||++|||+||+.|+...... .... .......+. .......
T Consensus 172 ~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~-----~~~~---~~~~~~~~~-~~~~~~~ 242 (286)
T cd06614 172 KRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPL-----RALF---LITTKGIPP-LKNPEKW 242 (286)
T ss_pred hhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHH-----HHHH---HHHhcCCCC-CcchhhC
Confidence 333456889999999 467899999999999999999997532211 0000 000101111 0011111
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
...+.+++.+||+.+|.+|||+.+|+++.++...-
T Consensus 243 ~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~ 277 (286)
T cd06614 243 SPEFKDFLNKCLVKDPEKRPSAEELLQHPFLKKAC 277 (286)
T ss_pred CHHHHHHHHHHhccChhhCcCHHHHhhChHhhccC
Confidence 23466788899999999999999999999987643
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou |
| >cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=258.59 Aligned_cols=233 Identities=21% Similarity=0.288 Sum_probs=162.7
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|+||.||+|+.. +|..+|+|++...... ......+.+|++++++++||||+++++++.+....++|+
T Consensus 1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~--~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 78 (284)
T cd07839 1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD--EGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVF 78 (284)
T ss_pred CceeEEEecccCCeEEEEEEECCCCcEEEEEEeeccccc--ccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEE
Confidence 3667788999999999999864 6888999988643221 122345788999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 501 EYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
||+++ +|.+.+.... ...|.||||+||+++.++.+||+|||+++..........
T Consensus 79 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~ 157 (284)
T cd07839 79 EYCDQ-DLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYS 157 (284)
T ss_pred ecCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhhccCCCCCCcC
Confidence 99984 6766554211 112349999999999999999999999986554333334
Q ss_pred cccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCC-----------hhhhhhhhccccCCC-C
Q 042735 556 ALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPS-----------PSVINMRLDEMLDPR-L 616 (667)
Q Consensus 556 ~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~-----------~~~~~~~~~~~~~~~-~ 616 (667)
...+++.|+||| ++.++|||||||++|||+||+.|+......... ............+.. .
T Consensus 158 ~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (284)
T cd07839 158 AEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPY 237 (284)
T ss_pred CCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhccccccc
Confidence 456889999999 356899999999999999999885311110000 000000000000000 0
Q ss_pred CCCCCc------hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 617 PPPSPD------VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 617 ~~~~~~------~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
+..... .......+.+++.+||+.||++|||++|++++.||
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~h~~f 284 (284)
T cd07839 238 PMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQHPYF 284 (284)
T ss_pred CCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhcCCCC
Confidence 000000 00112356688899999999999999999998765
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also |
| >cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=252.32 Aligned_cols=230 Identities=24% Similarity=0.382 Sum_probs=162.9
Q ss_pred CcCcceeecccCeEEEEEEe-----CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC--Cc
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA--RH 495 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-----~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~--~~ 495 (667)
|...+.||+|+||.||+|++ .++..+|+|.+..... ....+.+.+|++++++++||||+++++++.+. ..
T Consensus 6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~ 82 (284)
T cd05079 6 LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESG---GNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG 82 (284)
T ss_pred hhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCcccc---HHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCc
Confidence 56678899999999999974 3467899998764321 22345799999999999999999999999775 56
Q ss_pred eEEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCC
Q 042735 496 SILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
.++||||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++.....
T Consensus 83 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~ 162 (284)
T cd05079 83 IKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETD 162 (284)
T ss_pred eEEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCccccccccC
Confidence 8899999999999988753211 113399999999999999999999999865433
Q ss_pred CCC---cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC-----CCh--hhhhhhhccccCC
Q 042735 551 SSN---WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL-----PSP--SVINMRLDEMLDP 614 (667)
Q Consensus 551 ~~~---~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~-----~~~--~~~~~~~~~~~~~ 614 (667)
... .....|+..|+||| ++.++|||||||++|||+||+.|........ +.. ...........+.
T Consensus 163 ~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (284)
T cd05079 163 KEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEG 242 (284)
T ss_pred ccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHHcC
Confidence 221 12345777899999 4678999999999999999887642110000 000 0000000000011
Q ss_pred CCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 615 RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
...+... .....+.+++.+||+.+|++|||++++++.+..+
T Consensus 243 ~~~~~~~---~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~ 283 (284)
T cd05079 243 KRLPRPP---NCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI 283 (284)
T ss_pred ccCCCCC---CCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence 1111111 1233577899999999999999999999988653
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a |
| >cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-29 Score=249.88 Aligned_cols=207 Identities=20% Similarity=0.359 Sum_probs=150.5
Q ss_pred eeecccCeEEEEEEeCC-------------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 428 CIGSGRHGSVYRAELPS-------------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 428 ~lg~g~~g~vy~~~~~~-------------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
.||+|+||.||+|.... ...+++|.+... .......|.+|+.+++.++|||||+++|++....
T Consensus 2 ~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~----~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~ 77 (262)
T cd05077 2 HLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPS----HRDISLAFFETASMMRQVSHKHIVLLYGVCVRDV 77 (262)
T ss_pred ccccCCcceEeeeecccCCCccccccchhhceeEEEeecChh----hhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC
Confidence 58999999999997532 124778876432 2233457889999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCc-------eEEeccc
Q 042735 495 HSILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHK-------AHVSDFG 542 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~-------~kl~DFG 542 (667)
..++||||+++|+|...+.... ...|.||||+|||++.++. +|++|||
T Consensus 78 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g 157 (262)
T cd05077 78 ENIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPG 157 (262)
T ss_pred CCEEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCC
Confidence 9999999999999987765321 1123499999999987664 8999999
Q ss_pred ccccccCCCCCcccccccccccCCCC-------CCCchHHHHHHHHHHHH-hCCCCCCCCccCCCChhhhhhhhccccCC
Q 042735 543 IAKFLKPDSSNWSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP 614 (667)
Q Consensus 543 la~~~~~~~~~~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~Ell-tG~~p~~~~~~~~~~~~~~~~~~~~~~~~ 614 (667)
++...... ....|+..|+|||+ +.++|||||||++|||+ +|+.|+..... ..... ....
T Consensus 158 ~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~-----~~~~~----~~~~ 224 (262)
T cd05077 158 IPITVLSR----QECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTL-----AEKER----FYEG 224 (262)
T ss_pred CCccccCc----ccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcch-----hHHHH----HHhc
Confidence 98754322 23468889999993 45789999999999998 58877642210 00000 0011
Q ss_pred CCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHH
Q 042735 615 RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655 (667)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l 655 (667)
......+. ...+.+++.+||+.||++||++.+|++++
T Consensus 225 ~~~~~~~~----~~~~~~li~~cl~~dp~~Rp~~~~il~~~ 261 (262)
T cd05077 225 QCMLVTPS----CKELADLMTHCMNYDPNQRPFFRAIMRDI 261 (262)
T ss_pred CccCCCCC----hHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence 11111111 12467888899999999999999999865
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom |
| >cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-30 Score=268.79 Aligned_cols=220 Identities=21% Similarity=0.296 Sum_probs=160.2
Q ss_pred eecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc---CCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 429 IGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI---RHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 429 lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l---~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
||+|+||.||+|+. .++..+|||++...... .......+..|..++.+. +||||+++++++.+....++||||++
T Consensus 1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~ 79 (330)
T cd05586 1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIV-AKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMS 79 (330)
T ss_pred CCCCCceEEEEEEECCCCCEEEEEEEeHHHHh-hhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCC
Confidence 69999999999976 45789999987532111 112233456677777665 69999999999999999999999999
Q ss_pred CCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccccccc
Q 042735 505 RGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560 (667)
Q Consensus 505 ~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt 560 (667)
+|+|.+.+..... ..|.||||+|||++.++.+||+|||+++............+||
T Consensus 80 ~g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt 159 (330)
T cd05586 80 GGELFWHLQKEGRFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTFCGT 159 (330)
T ss_pred CChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCCccCccCC
Confidence 9999877654321 1244999999999999999999999998643333334457899
Q ss_pred ccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHH
Q 042735 561 YRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEV 633 (667)
Q Consensus 561 ~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (667)
+.||||| |+.++|||||||++|||+||+.||..... ....... ..-...++.. .. ...+.++
T Consensus 160 ~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~----~~~~~~i--~~~~~~~~~~--~~---~~~~~~l 228 (330)
T cd05586 160 TEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDT----QQMYRNI--AFGKVRFPKN--VL---SDEGRQF 228 (330)
T ss_pred ccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCH----HHHHHHH--HcCCCCCCCc--cC---CHHHHHH
Confidence 9999999 46689999999999999999999753221 0111100 0001122211 11 1235578
Q ss_pred HHhccccCCCCCC----CHHHHHHHHHHhhh
Q 042735 634 AFSCLDVSPESRP----TMQTITQQLLFSLV 660 (667)
Q Consensus 634 ~~~Cl~~~p~~RP----t~~ev~~~l~~~~~ 660 (667)
+.+||+.+|++|| +++|++++.|+...
T Consensus 229 i~~~L~~~P~~R~~~~~~~~~ll~h~~~~~~ 259 (330)
T cd05586 229 VKGLLNRNPQHRLGAHRDAVELKEHPFFADI 259 (330)
T ss_pred HHHHcCCCHHHCCCCCCCHHHHhcCccccCC
Confidence 8899999999998 78999999888643
|
Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of |
| >PHA03211 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-29 Score=271.29 Aligned_cols=227 Identities=19% Similarity=0.234 Sum_probs=160.6
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
..|...+.||+|+||.||+|.... +..||||.... ..+.+|++++++++|||||++++++..++..++|
T Consensus 169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~----------~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv 238 (461)
T PHA03211 169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY----------ASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLV 238 (461)
T ss_pred CCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc----------cCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEE
Confidence 468888999999999999998754 67899996321 2366899999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC--
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-- 552 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-- 552 (667)
|||+. |+|..++.... ...|.||||+|||++.++.+||+|||+++.......
T Consensus 239 ~e~~~-~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~ 317 (461)
T PHA03211 239 LPKYR-SDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTP 317 (461)
T ss_pred EEccC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCceecccccccc
Confidence 99995 68877664321 112449999999999999999999999987543221
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCc-c--CCCChhhhhhhhcc--ccCCCCCC---
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVS-S--ILPSPSVINMRLDE--MLDPRLPP--- 618 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~-~--~~~~~~~~~~~~~~--~~~~~~~~--- 618 (667)
......||+.||||| |+.++|||||||++|||++|..|+-... . ..+........+.. ......+.
T Consensus 318 ~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 397 (461)
T PHA03211 318 FHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAG 397 (461)
T ss_pred cccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcc
Confidence 123467999999999 5678999999999999999886632111 0 00010000000000 00000000
Q ss_pred -------------------CCCchH---HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 619 -------------------PSPDVQ---GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 619 -------------------~~~~~~---~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
..+.+. ..-..+.+++.+||+.||.+|||+.|++++.||.
T Consensus 398 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~hp~f~ 459 (461)
T PHA03211 398 SRLVSQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRLPLFQ 459 (461)
T ss_pred hHHHHHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhCcccC
Confidence 000000 0112466788899999999999999999999885
|
|
| >cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-29 Score=249.86 Aligned_cols=224 Identities=25% Similarity=0.329 Sum_probs=167.8
Q ss_pred eecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCCCC
Q 042735 429 IGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGS 507 (667)
Q Consensus 429 lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~g~ 507 (667)
||.|+||.||+|... .+..+|+|.+....... ....+.+.+|+.++++++||||+++++++.++...++||||+++|+
T Consensus 1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~ 79 (262)
T cd05572 1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVE-TGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGE 79 (262)
T ss_pred CCCCCceEEEEEEECCCCcEEEEEEEehhcchh-hhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCc
Confidence 689999999999875 47889999886533221 2234679999999999999999999999999999999999999999
Q ss_pred hHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcccccccccc
Q 042735 508 LATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRY 563 (667)
Q Consensus 508 L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y 563 (667)
|.+.+..... ..|.||||+||+++.++.+||+|||+++...... ......|++.|
T Consensus 80 L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~-~~~~~~~~~~~ 158 (262)
T cd05572 80 LWTILRDRGLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ-KTWTFCGTPEY 158 (262)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCccc-ccccccCCcCc
Confidence 9988764321 1123999999999999999999999998765432 22335789999
Q ss_pred cCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhc
Q 042735 564 VAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSC 637 (667)
Q Consensus 564 ~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 637 (667)
+||| ++.++|+||||+++|||++|+.|+..... ..................+... ...+.+++.+|
T Consensus 159 ~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~ 230 (262)
T cd05572 159 VAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDE--DPMEIYNDILKGNGKLEFPNYI------DKAAKDLIKQL 230 (262)
T ss_pred cChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCC--CHHHHHHHHhccCCCCCCCccc------CHHHHHHHHHH
Confidence 9999 35689999999999999999999864321 0011111111001111111111 23567888899
Q ss_pred cccCCCCCCC-----HHHHHHHHHHhhhhh
Q 042735 638 LDVSPESRPT-----MQTITQQLLFSLVYF 662 (667)
Q Consensus 638 l~~~p~~RPt-----~~ev~~~l~~~~~~~ 662 (667)
|+.+|++||+ ++|++++.||....+
T Consensus 231 l~~~p~~R~~~~~~~~~~l~~~~~~~~~~~ 260 (262)
T cd05572 231 LRRNPEERLGNLKGGIKDIKKHKWFNGFDW 260 (262)
T ss_pred ccCChhhCcCCcccCHHHHhcChhhhCCCC
Confidence 9999999999 999999999975443
|
Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi |
| >KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=249.86 Aligned_cols=227 Identities=29% Similarity=0.435 Sum_probs=168.6
Q ss_pred CCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHH--hcCCCCeeEEEEEEEeC----Cc
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT--KIRHRNIVKFYGFCSHA----RH 495 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~--~l~H~niv~~~g~~~~~----~~ 495 (667)
.....++||+|.||.||+|+++ |+-||||++... +++.+++|.++-. .+||+||..|++.-..+ .+
T Consensus 212 qI~L~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~sr-------dE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQ 283 (513)
T KOG2052|consen 212 QIVLQEIIGKGRFGEVWRGRWR-GEDVAVKIFSSR-------DERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQ 283 (513)
T ss_pred eeEEEEEecCccccceeecccc-CCceEEEEeccc-------chhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEE
Confidence 4556788999999999999996 556999998652 3457889998876 57999999999876543 37
Q ss_pred eEEEEEecCCCChHHHhcccc-------------------------------CCcccccccCCeeecCCCceEEeccccc
Q 042735 496 SILIYEYLKRGSLATNLSNDA-------------------------------AAEELDISSKNVLLDLEHKAHVSDFGIA 544 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~-------------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla 544 (667)
+|||.||-+.|||+++|.... +..|+|||++|||+..++..-|+|+|+|
T Consensus 284 LwLvTdYHe~GSL~DyL~r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLA 363 (513)
T KOG2052|consen 284 LWLVTDYHEHGSLYDYLNRNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 363 (513)
T ss_pred EEEeeecccCCcHHHHHhhccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceee
Confidence 899999999999999886431 2335699999999999999999999999
Q ss_pred ccccCCCC----CcccccccccccCCCC------------CCCchHHHHHHHHHHHHhC----------CCCCCCCccCC
Q 042735 545 KFLKPDSS----NWSALVGTYRYVAPDY------------RKKCDVYSFRVLALEVIKG----------KHPRGFVSSIL 598 (667)
Q Consensus 545 ~~~~~~~~----~~~~~~Gt~~y~aPE~------------~~~~DV~sfGvvl~ElltG----------~~p~~~~~~~~ 598 (667)
-....+.. .....+||-+|||||. -..+||||||.|+||++.+ +.||. .++-
T Consensus 364 v~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyy--d~Vp 441 (513)
T KOG2052|consen 364 VRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYY--DVVP 441 (513)
T ss_pred EEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcc--cCCC
Confidence 76544422 2345689999999993 1358999999999999864 24442 2233
Q ss_pred CChhhhhhhhc---cccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 599 PSPSVINMRLD---EMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 599 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..++..+++-- +.+.|.+|..... ...+..+.++|..||..+|..|-|+--|.+.+....
T Consensus 442 ~DPs~eeMrkVVCv~~~RP~ipnrW~s-~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~ 504 (513)
T KOG2052|consen 442 SDPSFEEMRKVVCVQKLRPNIPNRWKS-DPALRVMAKLMKECWYANPAARLTALRIKKTLAKLS 504 (513)
T ss_pred CCCCHHHHhcceeecccCCCCCccccc-CHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHh
Confidence 33444443311 1223444443333 356778889999999999999999988887766543
|
|
| >cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-29 Score=256.15 Aligned_cols=223 Identities=24% Similarity=0.364 Sum_probs=164.1
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
..|+..+.||+|+||.||+|.. .+++.+|+|++...... .....+.+.+|++++++++||||++++|++.+.+..++|
T Consensus 15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~-~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv 93 (307)
T cd06607 15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQ-SNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLV 93 (307)
T ss_pred hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccC-cHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEE
Confidence 3467778899999999999986 46788999987543221 223345788999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||++ |++.+.+.... ...|.||+|+||+++.++.+||+|||+++.....
T Consensus 94 ~e~~~-g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~---- 168 (307)
T cd06607 94 MEYCL-GSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVSPA---- 168 (307)
T ss_pred HHhhC-CCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCcceecCCC----
Confidence 99998 46555443110 1123499999999999999999999999865432
Q ss_pred ccccccccccCCCC---------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 555 SALVGTYRYVAPDY---------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~---------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
....|++.|+|||+ +.++|||||||++|||+||+.|+...... ...........+..+. ..
T Consensus 169 ~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~-----~~~~~~~~~~~~~~~~-----~~ 238 (307)
T cd06607 169 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM-----SALYHIAQNDSPTLSS-----ND 238 (307)
T ss_pred CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHH-----HHHHHHhcCCCCCCCc-----hh
Confidence 24578899999993 45899999999999999999997532210 0000000000111111 11
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
....+.+++.+||+.+|++||+|.+|+.+.|+..
T Consensus 239 ~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~ 272 (307)
T cd06607 239 WSDYFRNFVDSCLQKIPQDRPSSEELLKHRFVLR 272 (307)
T ss_pred hCHHHHHHHHHHhcCChhhCcCHHHHhcChhhcc
Confidence 2235678888999999999999999999988764
|
Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily |
| >cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-29 Score=255.50 Aligned_cols=224 Identities=25% Similarity=0.375 Sum_probs=171.0
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|... +++.+|+|.+..... ......+.+.+|++++++++||||+++++++.+++..++|
T Consensus 1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v 79 (290)
T cd05580 1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKI-VKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLV 79 (290)
T ss_pred CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHh-hhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEE
Confidence 36778899999999999999864 578899998754211 1122345688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 500 YEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
|||+++|+|.+.+..... ..|.||+|+||+++.++.+||+|||+++..... ..
T Consensus 80 ~e~~~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~---~~ 156 (290)
T cd05580 80 MEYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR---TY 156 (290)
T ss_pred EecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCccccCCC---CC
Confidence 999999999888754321 123499999999999999999999999876543 23
Q ss_pred cccccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccC--CCCCCCCCchHHHH
Q 042735 556 ALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD--PRLPPPSPDVQGKL 627 (667)
Q Consensus 556 ~~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 627 (667)
...|++.|+|||+ +.++||||||+++|||+||+.||...... .. ...... ..++... .
T Consensus 157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~----~~----~~~~~~~~~~~~~~~------~ 222 (290)
T cd05580 157 TLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPI----QI----YEKILEGKVRFPSFF------S 222 (290)
T ss_pred CCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHH----HH----HHHHhcCCccCCccC------C
Confidence 4578999999993 56899999999999999999997533210 00 011111 1122211 1
Q ss_pred HHHHHHHHhccccCCCCCC-----CHHHHHHHHHHhhhhh
Q 042735 628 ISIMEVAFSCLDVSPESRP-----TMQTITQQLLFSLVYF 662 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~ 662 (667)
..+.+++.+||+.+|.+|| +++|++++.++....+
T Consensus 223 ~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~~ 262 (290)
T cd05580 223 PDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNHPWFAGIDW 262 (290)
T ss_pred HHHHHHHHHHccCCHHHccCcccCCHHHHHcCcccccCCH
Confidence 2456788899999999999 8999999988765543
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi |
| >cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=264.19 Aligned_cols=235 Identities=21% Similarity=0.330 Sum_probs=165.9
Q ss_pred HHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC----
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA---- 493 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~---- 493 (667)
..++|...+.||+|+||.||+|.. .++..||||++..... .....+.+.+|++++++++||||+++++++...
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 90 (343)
T cd07878 13 VPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQ--SLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIE 90 (343)
T ss_pred hhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhh--hhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccc
Confidence 346788889999999999999975 5678899999865322 122345688999999999999999999987543
Q ss_pred --CceEEEEEecCCCChHHHhcccc-----------------------CCcccccccCCeeecCCCceEEeccccccccc
Q 042735 494 --RHSILIYEYLKRGSLATNLSNDA-----------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLK 548 (667)
Q Consensus 494 --~~~~lv~ey~~~g~L~~~l~~~~-----------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~ 548 (667)
...++++||+ +++|.+.+.... ...|.||||+||+++.++.+||+|||+++...
T Consensus 91 ~~~~~~~~~~~~-~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~ 169 (343)
T cd07878 91 NFNEVYLVTNLM-GADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQAD 169 (343)
T ss_pred ccCcEEEEeecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEEcCCccceecC
Confidence 4578999987 678876654321 12245999999999999999999999998654
Q ss_pred CCCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC-----------CChhhhhh----
Q 042735 549 PDSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL-----------PSPSVINM---- 606 (667)
Q Consensus 549 ~~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~-----------~~~~~~~~---- 606 (667)
.. .+...||+.|+||| |+.++|||||||++|||++|+.||....... +.......
T Consensus 170 ~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (343)
T cd07878 170 DE---MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSE 246 (343)
T ss_pred CC---cCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhcchh
Confidence 32 23467999999999 3568999999999999999999985322110 00000000
Q ss_pred hhccccCCCCCCCCCch-----HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 607 RLDEMLDPRLPPPSPDV-----QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 607 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
....... .++...... ......+.+++.+|++.||++|||+.|++++.||...
T Consensus 247 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~hp~~~~~ 304 (343)
T cd07878 247 HARKYIQ-SLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAHPYFSQY 304 (343)
T ss_pred hHHHHhh-ccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhcc
Confidence 0000000 000000000 0011235688899999999999999999999998753
|
Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is |
| >cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4 | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-29 Score=256.86 Aligned_cols=223 Identities=22% Similarity=0.352 Sum_probs=167.3
Q ss_pred ceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCC
Q 042735 427 YCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKR 505 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~ 505 (667)
..||+|+||.||+|.. .++..+|||++.... ......+.+|+.++++++||||+++++++..++..++||||+++
T Consensus 26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~----~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~ 101 (292)
T cd06657 26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRK----QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEG 101 (292)
T ss_pred HHcCCCCCeEEEEEEEcCCCeEEEEEEecccc----hhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCC
Confidence 5689999999999976 567889999875321 12345689999999999999999999999999999999999999
Q ss_pred CChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccccccccc
Q 042735 506 GSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR 562 (667)
Q Consensus 506 g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~ 562 (667)
++|.+.+..... ..+.|+||+||+++.++.++|+|||++..............||+.
T Consensus 102 ~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~ 181 (292)
T cd06657 102 GALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPY 181 (292)
T ss_pred CcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccceecccccccccccccCcc
Confidence 999887643221 113499999999999999999999998765433323344678999
Q ss_pred ccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHh
Q 042735 563 YVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFS 636 (667)
Q Consensus 563 y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (667)
|+|||+ +.++|||||||++|||++|+.||...... .... .......+..... ......+.+++.+
T Consensus 182 y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~----~~~~-~~~~~~~~~~~~~----~~~~~~l~~li~~ 252 (292)
T cd06657 182 WMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL----KAMK-MIRDNLPPKLKNL----HKVSPSLKGFLDR 252 (292)
T ss_pred ccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH----HHHH-HHHhhCCcccCCc----ccCCHHHHHHHHH
Confidence 999993 56899999999999999999997532211 0000 0111111111111 1112245678889
Q ss_pred ccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 637 CLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 637 Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
||+.+|.+||++.+++++.|+.....
T Consensus 253 ~l~~~P~~R~~~~~ll~~~~~~~~~~ 278 (292)
T cd06657 253 LLVRDPAQRATAAELLKHPFLAKAGP 278 (292)
T ss_pred HHhCCcccCcCHHHHhcChHHhccCC
Confidence 99999999999999999999876654
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo |
| >cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=258.19 Aligned_cols=239 Identities=19% Similarity=0.270 Sum_probs=169.8
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCc-hHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSD-QIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
+|+..+.||+|+||.||+|... +++.+|||++....... .......+..|++++++++||||+++++++.+.+..++|
T Consensus 1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv 80 (298)
T cd07841 1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLV 80 (298)
T ss_pred CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEE
Confidence 3667788999999999999864 68899999986543221 112234577899999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc--C-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSNDA--A-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~--~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||+ +|+|.+.+.... . ..|.||||+||+++.++.+||+|||+++.........
T Consensus 81 ~e~~-~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~ 159 (298)
T cd07841 81 FEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKM 159 (298)
T ss_pred Eccc-CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccceeeeeccCCCccc
Confidence 9999 899988876432 1 1133999999999999999999999998765443333
Q ss_pred ccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhh---------hh----hhccccCC
Q 042735 555 SALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVI---------NM----RLDEMLDP 614 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~---------~~----~~~~~~~~ 614 (667)
....+++.|+|||+ +.++|||||||++|||++|.+|+............. .. ........
T Consensus 160 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (298)
T cd07841 160 THQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEF 239 (298)
T ss_pred cccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhhhhhcccccccccc
Confidence 44567889999993 457999999999999999987764322110000000 00 00000000
Q ss_pred CCCCCCC---chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 615 RLPPPSP---DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 615 ~~~~~~~---~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
......+ ........+.+++.+||+.+|++|||++|++++.|+....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~~~~~~~~ 289 (298)
T cd07841 240 KPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEHPYFSNDP 289 (298)
T ss_pred cccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhCccccCCC
Confidence 0000000 0011124567889999999999999999999998887543
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is |
| >cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-29 Score=257.94 Aligned_cols=232 Identities=21% Similarity=0.290 Sum_probs=174.4
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|+||.||+|... ++..+|+|.+...... .....+.+.+|++++++++||||+++++++.+....++||
T Consensus 2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~ 80 (316)
T cd05574 2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMI-KRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVM 80 (316)
T ss_pred ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccc-hHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEE
Confidence 6778889999999999999875 4889999988654322 1224457889999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCC--
Q 042735 501 EYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-- 552 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-- 552 (667)
||+.+|+|.+++..... ..|.||||+||+++.++.++|+|||++........
T Consensus 81 e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~ 160 (316)
T cd05574 81 DYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPV 160 (316)
T ss_pred EecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecchhhccccccccc
Confidence 99999999988753210 11339999999999999999999999875432111
Q ss_pred ---------------------------CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC
Q 042735 553 ---------------------------NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP 599 (667)
Q Consensus 553 ---------------------------~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~ 599 (667)
......||..|+||| ++.++|||||||++|||++|+.||......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~-- 238 (316)
T cd05574 161 SKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRD-- 238 (316)
T ss_pred ccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchH--
Confidence 112346899999999 466899999999999999999998633211
Q ss_pred ChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCC----HHHHHHHHHHhhhhhcc
Q 042735 600 SPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPT----MQTITQQLLFSLVYFSY 664 (667)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt----~~ev~~~l~~~~~~~~~ 664 (667)
.....+.+.....+.. ......+.+++.+||+.+|++||| ++|++.+.||....|+.
T Consensus 239 ------~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~~~~~~~~~~~~ 299 (316)
T cd05574 239 ------ETFSNILKKEVTFPGS--PPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQHPFFRGVNWAL 299 (316)
T ss_pred ------HHHHHHhcCCccCCCc--cccCHHHHHHHHHHccCCHhHCCCchhhHHHHHcCchhhcCChhh
Confidence 0011111111111111 012235778888999999999999 99999999988776654
|
Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin |
| >cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4 | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-29 Score=256.64 Aligned_cols=232 Identities=23% Similarity=0.358 Sum_probs=157.3
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc---CCCCeeEEEEEEEe-----
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI---RHRNIVKFYGFCSH----- 492 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l---~H~niv~~~g~~~~----- 492 (667)
+|+..+.||+|+||.||+|+.. +++.+|+|.+....... .....+.+|++++.++ +||||+++++++..
T Consensus 1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~ 78 (288)
T cd07863 1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNED--GLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDR 78 (288)
T ss_pred CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCC--CCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCC
Confidence 3677889999999999999764 57889999876532211 1123456677776655 79999999998864
Q ss_pred CCceEEEEEecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEeccccccc
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKF 546 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~ 546 (667)
....++||||+++ +|.+++.... ...|.||||+||+++.++.+||+|||+++.
T Consensus 79 ~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~ 157 (288)
T cd07863 79 ETKVTLVFEHVDQ-DLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLARI 157 (288)
T ss_pred CceEEEEEccccc-CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccCcccc
Confidence 3457899999985 7776664311 112349999999999999999999999987
Q ss_pred ccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh-----------hh-
Q 042735 547 LKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM-----------RL- 608 (667)
Q Consensus 547 ~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~-----------~~- 608 (667)
..... ..+...||+.|+||| ++.++|||||||++|||++|++||............... ..
T Consensus 158 ~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (288)
T cd07863 158 YSCQM-ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVT 236 (288)
T ss_pred ccCcc-cCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhCccccc
Confidence 64322 223457899999999 567899999999999999999997532110000000000 00
Q ss_pred --ccccCCCCCCCCCch-HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 609 --DEMLDPRLPPPSPDV-QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 609 --~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.....+..+.+.... ......+.+++.+|++.||++|||+.|++.+.||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~hp~f 288 (288)
T cd07863 237 LPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQHPFF 288 (288)
T ss_pred ccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence 000000000000000 0112245688889999999999999999988775
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou |
| >cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-29 Score=255.26 Aligned_cols=225 Identities=25% Similarity=0.376 Sum_probs=163.5
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~l 498 (667)
++|+..+.||+|+||.||++.. .++..+|+|++...... .....+.+|+.++.++. |||||+++|++..++..++
T Consensus 4 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~ 80 (288)
T cd06616 4 EDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDE---KEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWI 80 (288)
T ss_pred HHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccCh---HHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEE
Confidence 3555667899999999999976 45788999987643221 34567899999999997 9999999999999999999
Q ss_pred EEEecCCCChHH---Hh---------------------------ccccCCcccccccCCeeecCCCceEEeccccccccc
Q 042735 499 IYEYLKRGSLAT---NL---------------------------SNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLK 548 (667)
Q Consensus 499 v~ey~~~g~L~~---~l---------------------------~~~~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~ 548 (667)
+|||+.. ++.+ .+ +......|.||||+||+++.++.+||+|||+++...
T Consensus 81 ~~e~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~ 159 (288)
T cd06616 81 CMELMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLV 159 (288)
T ss_pred EEecccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEeecchhHHhc
Confidence 9999874 3322 11 111123355999999999999999999999998654
Q ss_pred CCCCCcccccccccccCCC---------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhcccc---CCCC
Q 042735 549 PDSSNWSALVGTYRYVAPD---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML---DPRL 616 (667)
Q Consensus 549 ~~~~~~~~~~Gt~~y~aPE---------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~ 616 (667)
.... .....||+.|+||| ++.++|||||||++|||++|+.||..... .... ..... .+.+
T Consensus 160 ~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~------~~~~-~~~~~~~~~~~~ 231 (288)
T cd06616 160 DSIA-KTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNS------VFDQ-LTQVVKGDPPIL 231 (288)
T ss_pred cCCc-cccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcch------HHHH-HhhhcCCCCCcC
Confidence 3221 23346899999999 34579999999999999999999753221 0000 11111 1122
Q ss_pred CCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
+.... ......+.+++.+||+.+|++|||++||+++.++..
T Consensus 232 ~~~~~--~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~~~~~~ 272 (288)
T cd06616 232 SNSEE--REFSPSFVNFINLCLIKDESKRPKYKELLEHPFIKD 272 (288)
T ss_pred CCcCC--CccCHHHHHHHHHHccCChhhCcCHHHHhcChhhhc
Confidence 11110 112335778889999999999999999999988854
|
Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates |
| >cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=246.49 Aligned_cols=219 Identities=25% Similarity=0.454 Sum_probs=163.4
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|...+.||+|+||.||+|...++..+|+|.+... ....+.|.+|++++++++|+||+++++++.+ ...+++|
T Consensus 6 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~-----~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~ 79 (260)
T cd05073 6 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-----SMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIIT 79 (260)
T ss_pred cceeEEeEecCccceEEEEEEecCCccEEEEecCCC-----hhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEE
Confidence 467788999999999999999877788999987542 1234578999999999999999999999987 7789999
Q ss_pred EecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC-
Q 042735 501 EYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN- 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~- 553 (667)
||+++|+|.+++..... ..|.||||+||+++.++.+||+|||.++........
T Consensus 80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~ 159 (260)
T cd05073 80 EFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTA 159 (260)
T ss_pred EeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCcceeeccCCCccc
Confidence 99999999988764211 112399999999999999999999999865432211
Q ss_pred cccccccccccCCCC------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 WSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....++..|+|||+ +.++|||||||++||++| |+.||..... ...... ... +...+.. . ..
T Consensus 160 ~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~----~~~~~~-~~~--~~~~~~~-~---~~ 228 (260)
T cd05073 160 REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN----PEVIRA-LER--GYRMPRP-E---NC 228 (260)
T ss_pred ccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCH----HHHHHH-HhC--CCCCCCc-c---cC
Confidence 122345678999993 568999999999999999 8988753221 111110 111 1111111 1 11
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
...+.+++.+||+.+|++||++.++.+.|.
T Consensus 229 ~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~ 258 (260)
T cd05073 229 PEELYNIMMRCWKNRPEERPTFEYIQSVLD 258 (260)
T ss_pred CHHHHHHHHHHcccCcccCcCHHHHHHHHh
Confidence 235678888999999999999999998875
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa |
| >KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-30 Score=247.30 Aligned_cols=231 Identities=21% Similarity=0.300 Sum_probs=177.2
Q ss_pred HcCCcCcceeecccCeEEEEEE-eCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+++|+|.||+|-.++ ..+++.+|+|++++.+.... .....-..|-+++.+.+||.+..+.-.|...+.++.
T Consensus 167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiak-dEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCF 245 (516)
T KOG0690|consen 167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAK-DEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCF 245 (516)
T ss_pred cchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeeh-HHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEE
Confidence 4688899999999999999996 46688999999887654332 223456678899999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccCC------------------------cccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDAAA------------------------EELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~~------------------------~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||+.||+|+-+|...... ...|+|.+|.|+|.+|++||+|||+++.--......
T Consensus 246 VMeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g~t~ 325 (516)
T KOG0690|consen 246 VMEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYGDTT 325 (516)
T ss_pred EEEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCceEeeecccchhccccccee
Confidence 99999999998777653211 113999999999999999999999999654455566
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
.++||||.|+||| |..++|+|..|||||||+.|+.||...+.. ...... -+-+-+.|......
T Consensus 326 kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~----kLFeLI--l~ed~kFPr~ls~e----- 394 (516)
T KOG0690|consen 326 KTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHE----KLFELI--LMEDLKFPRTLSPE----- 394 (516)
T ss_pred ccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccchh----HHHHHH--HhhhccCCccCCHH-----
Confidence 7899999999999 788999999999999999999998532211 011111 11122333332221
Q ss_pred HHHHHHHhccccCCCCCCC-----HHHHHHHHHHhhhhhc
Q 042735 629 SIMEVAFSCLDVSPESRPT-----MQTITQQLLFSLVYFS 663 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt-----~~ev~~~l~~~~~~~~ 663 (667)
...+..--+.+||.+|-- +.||.++-+|..+.|.
T Consensus 395 -AktLLsGLL~kdP~kRLGgGpdDakEi~~h~FF~~v~W~ 433 (516)
T KOG0690|consen 395 -AKTLLSGLLKKDPKKRLGGGPDDAKEIMRHRFFASVDWE 433 (516)
T ss_pred -HHHHHHHHhhcChHhhcCCCchhHHHHHhhhhhccCCHH
Confidence 122333568999999943 7899999999988775
|
|
| >cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-29 Score=251.70 Aligned_cols=223 Identities=24% Similarity=0.398 Sum_probs=166.1
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|+||.||+|... ++..+|+|.+...... ....+.+.+|+.++++++||||+++++++......++|+
T Consensus 1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~ 78 (257)
T cd08225 1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMP--VKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVM 78 (257)
T ss_pred CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhcc--chhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEE
Confidence 4677889999999999999864 5778999987543211 123456889999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC--------------------------CcccccccCCeeecCCC-ceEEecccccccccCCCCC
Q 042735 501 EYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEH-KAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~-~~kl~DFGla~~~~~~~~~ 553 (667)
||+++++|.+++..... ..|.|+||+||++++++ .+||+|||.+.........
T Consensus 79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~ 158 (257)
T cd08225 79 EYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMEL 158 (257)
T ss_pred ecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchhccCCccc
Confidence 99999999887754211 11339999999999875 5699999999876544333
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
.....|++.|+||| ++.++|||||||++|||++|+.|+..... .... ........+...+. ..
T Consensus 159 ~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~----~~~~----~~~~~~~~~~~~~~---~~ 227 (257)
T cd08225 159 AYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNL----HQLV----LKICQGYFAPISPN---FS 227 (257)
T ss_pred ccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccH----HHHH----HHHhcccCCCCCCC---CC
Confidence 33456899999999 35689999999999999999999753221 0111 11111111111111 11
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..+.+++.+||+.+|++|||+.|++++.|+
T Consensus 228 ~~~~~~i~~~l~~~p~~Rpt~~~ll~~~~~ 257 (257)
T cd08225 228 RDLRSLISQLFKVSPRDRPSITSILKRPFL 257 (257)
T ss_pred HHHHHHHHHHhccChhhCcCHHHHhhCCCC
Confidence 246678889999999999999999988764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. |
| >cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=256.43 Aligned_cols=224 Identities=23% Similarity=0.374 Sum_probs=164.0
Q ss_pred CCcCcceeecccCeEEEEEEeCC--------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEe
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPS--------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSH 492 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~--------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~ 492 (667)
+|...+.||+|+||.||+|+... ...+|+|.+.... .....+++.+|+++++++ +||||+++++++..
T Consensus 13 ~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~ 89 (334)
T cd05100 13 RLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDA---TDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 89 (334)
T ss_pred HeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEccccc---CHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEcc
Confidence 57788899999999999996421 2368999876432 123356799999999999 79999999999999
Q ss_pred CCceEEEEEecCCCChHHHhccccC----------------------------------------CcccccccCCeeecC
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDAA----------------------------------------AEELDISSKNVLLDL 532 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~~----------------------------------------~~~~dlk~~NiLld~ 532 (667)
.+..+++|||+++|+|.+++..... ..|.||||+||+++.
T Consensus 90 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nill~~ 169 (334)
T cd05100 90 DGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTE 169 (334)
T ss_pred CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcC
Confidence 9999999999999999988753210 112399999999999
Q ss_pred CCceEEecccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhh
Q 042735 533 EHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSV 603 (667)
Q Consensus 533 ~~~~kl~DFGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~ 603 (667)
++.+||+|||+++........ .....++..|+||| ++.++|||||||++|||++ |+.||..... ...
T Consensus 170 ~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~----~~~ 245 (334)
T cd05100 170 DNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPV----EEL 245 (334)
T ss_pred CCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCH----HHH
Confidence 999999999999865432211 12233456899999 4678999999999999998 8888643211 111
Q ss_pred hhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 604 INMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.... ........+. .....+.+++.+||+.+|++||||.|+++.+....
T Consensus 246 ~~~~-~~~~~~~~~~------~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~ 294 (334)
T cd05100 246 FKLL-KEGHRMDKPA------NCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVL 294 (334)
T ss_pred HHHH-HcCCCCCCCC------CCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHh
Confidence 1111 0101111111 11235668889999999999999999999987654
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=248.72 Aligned_cols=223 Identities=25% Similarity=0.441 Sum_probs=163.9
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-Cc----eEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-KE----FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-~~----~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
.+|...+.||+|+||.||+|.... +. .+|+|....... ......+.+|+.++++++||||++++|++.. ..
T Consensus 7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~ 82 (279)
T cd05057 7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETS---PKANKEILDEAYVMASVDHPHVVRLLGICLS-SQ 82 (279)
T ss_pred HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCC---HHHHHHHHHHHHHHHhCCCCCcceEEEEEec-Cc
Confidence 467788899999999999998643 32 588888764322 2344678999999999999999999999987 78
Q ss_pred eEEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCC
Q 042735 496 SILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
.++||||+++|+|.+.+..... ..|.||||+||+++.++.+||+|||+++.....
T Consensus 83 ~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~ 162 (279)
T cd05057 83 VQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVD 162 (279)
T ss_pred eEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCcccccccCc
Confidence 8999999999999988764311 113499999999999999999999999876543
Q ss_pred CCCcc--cccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 551 SSNWS--ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 551 ~~~~~--~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
..... ...++..|+||| ++.++|||||||++||++| |+.||..... .... ..... ....+.+.
T Consensus 163 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~----~~~~-~~~~~--~~~~~~~~- 234 (279)
T cd05057 163 EKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPA----VEIP-DLLEK--GERLPQPP- 234 (279)
T ss_pred ccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCH----HHHH-HHHhC--CCCCCCCC-
Confidence 32211 122457899999 3568999999999999999 9999763221 1111 11111 01111111
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
. ....+.+++.+||..+|.+|||+.++++.+...
T Consensus 235 ~---~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~ 268 (279)
T cd05057 235 I---CTIDVYMVLVKCWMIDAESRPTFKELINEFSKM 268 (279)
T ss_pred C---CCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence 1 123466788899999999999999999988764
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea |
| >cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=247.50 Aligned_cols=224 Identities=25% Similarity=0.396 Sum_probs=162.7
Q ss_pred cCCcCcceeecccCeEEEEEEeCC----CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS----KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~----~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
++|...+.||+|+||.||+|...+ ...+|||....... ....+.|.+|+.++++++||||+++++++.+ ...
T Consensus 6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~---~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~ 81 (270)
T cd05056 6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTS---PSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPV 81 (270)
T ss_pred hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCC---HHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCc
Confidence 356778899999999999997643 24688888754321 2334679999999999999999999999875 457
Q ss_pred EEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
++||||+++|+|.+++..... ..|.||||+||+++.++.+|++|||+++......
T Consensus 82 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~ 161 (270)
T cd05056 82 WIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDES 161 (270)
T ss_pred EEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceeeeccccc
Confidence 899999999999988754211 1123999999999999999999999998764332
Q ss_pred CC-cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 552 SN-WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 552 ~~-~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
.. .+...++..|+||| ++.++|||||||++||+++ |+.||...... ... ...........+. .
T Consensus 162 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~----~~~-~~~~~~~~~~~~~---~- 232 (270)
T cd05056 162 YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNN----DVI-GRIENGERLPMPP---N- 232 (270)
T ss_pred ceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHH----HHH-HHHHcCCcCCCCC---C-
Confidence 11 12233456899999 4578999999999999996 99997533211 111 1111111111111 1
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
....+.+++.+||..+|++|||+.++++.+....
T Consensus 233 --~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~ 266 (270)
T cd05056 233 --CPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDIL 266 (270)
T ss_pred --CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 1225667888999999999999999999987643
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions |
| >cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=250.17 Aligned_cols=229 Identities=24% Similarity=0.410 Sum_probs=167.7
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCC--chHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPS--DQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~--~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
+|+..+.||+|+||.||+|.. .++..+|+|++...... .+....+.+.+|++++++++|||||++++++.+.+..++
T Consensus 1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~ 80 (268)
T cd06630 1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL 80 (268)
T ss_pred CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence 467788999999999999975 56788999987643321 112234678999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCC-ceEEecccccccccCCCC-
Q 042735 499 IYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEH-KAHVSDFGIAKFLKPDSS- 552 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~-~~kl~DFGla~~~~~~~~- 552 (667)
||||+++++|.+.+..... ..|.||||+||+++.++ .+||+|||+++.......
T Consensus 81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~ 160 (268)
T cd06630 81 FVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTG 160 (268)
T ss_pred EEeccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccccccccccccccc
Confidence 9999999999887754221 11349999999998776 599999999987653311
Q ss_pred ---CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 553 ---NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 553 ---~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
......||..|+||| ++.++||||+|+++|||++|+.|+.......... ...........+..+.
T Consensus 161 ~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~----- 234 (268)
T cd06630 161 AGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLA-LIFKIASATTAPSIPE----- 234 (268)
T ss_pred CCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHH-HHHHHhccCCCCCCch-----
Confidence 122356889999999 4678999999999999999999985332111100 0000000001111111
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.....+.+++.+|+..+|++|||+.|++++.+|
T Consensus 235 -~~~~~~~~~i~~~l~~~p~~R~~~~~ll~~~~~ 267 (268)
T cd06630 235 -HLSPGLRDVTLRCLELQPEDRPPSRELLKHPVF 267 (268)
T ss_pred -hhCHHHHHHHHHHcCCCcccCcCHHHHhcCccc
Confidence 112356678889999999999999999988775
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their |
| >cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-29 Score=255.73 Aligned_cols=229 Identities=22% Similarity=0.271 Sum_probs=165.9
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|... .++.||+|.+..... ......+.+.+|+++++.++||||+++++.+..++..++|
T Consensus 1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~-~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv 79 (305)
T cd05609 1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNL-ILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMV 79 (305)
T ss_pred CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhh-hhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEE
Confidence 36888899999999999999864 467899998764321 1122345688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCC----
Q 042735 500 YEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS---- 551 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~---- 551 (667)
|||+++|+|.+++..... ..|.||||+||+++.++.+|++|||+++......
T Consensus 80 ~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~ 159 (305)
T cd05609 80 MEYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNL 159 (305)
T ss_pred EecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCccccCcCccccc
Confidence 999999999988754221 1134999999999999999999999987421100
Q ss_pred -----------CCcccccccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCC
Q 042735 552 -----------SNWSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP 614 (667)
Q Consensus 552 -----------~~~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~ 614 (667)
.......|+..|+|||+ +.++|||||||++|||+||+.||..... .......... ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~----~~~~~~~~~~--~~ 233 (305)
T cd05609 160 YEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTP----EELFGQVISD--DI 233 (305)
T ss_pred cccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHHhc--cc
Confidence 01123467889999993 5689999999999999999999752211 1111111111 00
Q ss_pred CCCCCCCchHHHHHHHHHHHHhccccCCCCCCC---HHHHHHHHHHhh
Q 042735 615 RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPT---MQTITQQLLFSL 659 (667)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt---~~ev~~~l~~~~ 659 (667)
..+.... .....+.+++.+||+.+|++||+ +.+++++.|+..
T Consensus 234 ~~~~~~~---~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~~~~~~ 278 (305)
T cd05609 234 EWPEGDE---ALPADAQDLISRLLRQNPLERLGTGGAFEVKQHRFFLG 278 (305)
T ss_pred CCCCccc---cCCHHHHHHHHHHhccChhhccCccCHHHHHhCccccC
Confidence 1111111 11224668888999999999998 688888887744
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a |
| >cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-29 Score=255.54 Aligned_cols=234 Identities=24% Similarity=0.375 Sum_probs=166.3
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|+||.||+|... ++..+|||++...... ....+.+.+|++++++++||||+++++++..++..++||
T Consensus 2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~ 79 (288)
T cd07833 2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDD--EDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVF 79 (288)
T ss_pred ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhccc--ccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEE
Confidence 5788889999999999999875 5778999987643221 123457899999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC-Ccc
Q 042735 501 EYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-NWS 555 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~~~ 555 (667)
||++++.+........ ...|.|++|+||++++++.+||+|||+++....... ...
T Consensus 80 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~ 159 (288)
T cd07833 80 EYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLT 159 (288)
T ss_pred ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccccCCCcccccc
Confidence 9999887765443211 112349999999999999999999999987654432 234
Q ss_pred cccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCC----------C-Chhhh-hhhhccccCC-C
Q 042735 556 ALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSIL----------P-SPSVI-NMRLDEMLDP-R 615 (667)
Q Consensus 556 ~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~----------~-~~~~~-~~~~~~~~~~-~ 615 (667)
...|+..|+|||+ +.++||||||+++|||++|+.||....... . .+... .......... .
T Consensus 160 ~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (288)
T cd07833 160 DYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVA 239 (288)
T ss_pred CcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCccccccc
Confidence 4678899999993 468999999999999999999875321100 0 00000 0000000000 0
Q ss_pred CCCCC-Cch------HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 616 LPPPS-PDV------QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 616 ~~~~~-~~~------~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.+... ... .....++.+++.+||..+|++|||+++++++.||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~f 288 (288)
T cd07833 240 FPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQHPYF 288 (288)
T ss_pred cCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhcCCCC
Confidence 00000 000 0012457789999999999999999999987664
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning |
| >cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-29 Score=255.07 Aligned_cols=232 Identities=21% Similarity=0.272 Sum_probs=163.0
Q ss_pred CcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|+..+.||+|++|.||+|.. .++..+|+|++...... ....+.+.+|++++++++|||++++++++.+++..+++||
T Consensus 1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e 78 (283)
T cd07835 1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETED--EGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFE 78 (283)
T ss_pred CchheEecCCCCeEEEEEEEcCCCCEEEEEEeeccccc--ccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEe
Confidence 45678899999999999976 46889999987643221 1223468899999999999999999999999999999999
Q ss_pred ecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 502 YLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 502 y~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
|++ ++|.+++.... ...|.|++|+||+++.++.+||+|||+++..........
T Consensus 79 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~ 157 (283)
T cd07835 79 FLD-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYT 157 (283)
T ss_pred ccC-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCccccC
Confidence 995 68887765432 011349999999999999999999999986543322233
Q ss_pred cccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh----------hhc---ccc--C
Q 042735 556 ALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM----------RLD---EML--D 613 (667)
Q Consensus 556 ~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~----------~~~---~~~--~ 613 (667)
...+++.|+|||+ +.++|||||||++|||+||+.||............... ... +.. -
T Consensus 158 ~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (283)
T cd07835 158 HEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTF 237 (283)
T ss_pred ccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhc
Confidence 3467899999993 45799999999999999999997532211000000000 000 000 0
Q ss_pred CCCCCCC--CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 614 PRLPPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 614 ~~~~~~~--~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
+...... .........+.+++.+||+.+|++|||++|++++.||
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~~~~ 283 (283)
T cd07835 238 PKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQHPYF 283 (283)
T ss_pred ccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhcCCCC
Confidence 0000000 0000111356788999999999999999999988664
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc |
| >cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6 | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-29 Score=252.55 Aligned_cols=228 Identities=22% Similarity=0.361 Sum_probs=165.0
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHH-HHhcCCCCeeEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEA-LTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~-l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
++|+..+.||+|+||.||+|... ++..||+|++...... .....+..|+.+ ++..+|||||++++++...+..++
T Consensus 1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~l 77 (283)
T cd06617 1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNS---QEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWI 77 (283)
T ss_pred CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCc---HHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEE
Confidence 47888899999999999999864 6889999988654321 223456667765 566789999999999999999999
Q ss_pred EEEecCCCChHHHhccc----------------------------c-CCcccccccCCeeecCCCceEEecccccccccC
Q 042735 499 IYEYLKRGSLATNLSND----------------------------A-AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~----------------------------~-~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~ 549 (667)
||||++ |+|.+.+... . ...|.||||+||+++.++.+||+|||+++....
T Consensus 78 v~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~ 156 (283)
T cd06617 78 CMEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVD 156 (283)
T ss_pred Ehhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeeccccccccc
Confidence 999997 5665544320 0 122449999999999999999999999986543
Q ss_pred CCCCcccccccccccCCCC----------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCC
Q 042735 550 DSSNWSALVGTYRYVAPDY----------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE~----------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (667)
.. ..+...|+..|+|||+ +.++|||||||++|||++|+.|+..... ... ...... ....+..+..
T Consensus 157 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~-~~~~~~-~~~~~~~~~~ 231 (283)
T cd06617 157 SV-AKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKT--PFQ-QLKQVV-EEPSPQLPAE 231 (283)
T ss_pred cc-ccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCcccc--CHH-HHHHHH-hcCCCCCCcc
Confidence 21 2233568999999993 4579999999999999999999752211 000 000000 1111222111
Q ss_pred CCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 620 ~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
. ....+.+++.+||..+|++||++++++++.|+.....
T Consensus 232 --~---~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~ 269 (283)
T cd06617 232 --K---FSPEFQDFVNKCLKKNYKERPNYPELLQHPFFELHLS 269 (283)
T ss_pred --c---cCHHHHHHHHHHccCChhhCcCHHHHhcCchhhhccc
Confidence 1 1224677888999999999999999999999876553
|
Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs |
| >PHA03207 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-29 Score=264.42 Aligned_cols=230 Identities=20% Similarity=0.236 Sum_probs=163.3
Q ss_pred cCCcCcceeecccCeEEEEEEeC---CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP---SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~---~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
.+|...+.||+|+||.||+|... .+..+|||.+... +.+.+|++++++++|||||++++++......+
T Consensus 92 ~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~---------~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~ 162 (392)
T PHA03207 92 MQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG---------KTPGREIDILKTISHRAIINLIHAYRWKSTVC 162 (392)
T ss_pred CceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc---------ccHHHHHHHHHhcCCCCccceeeeEeeCCEEE
Confidence 46888999999999999999753 3467888876432 23568999999999999999999999999999
Q ss_pred EEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC-
Q 042735 498 LIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS- 552 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~- 552 (667)
+||||+. ++|.+++.... ...|.||||+|||++.++.+||+|||+++.......
T Consensus 163 lv~e~~~-~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~ 241 (392)
T PHA03207 163 MVMPKYK-CDLFTYVDRSGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDT 241 (392)
T ss_pred EEehhcC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEccCccccccCccccc
Confidence 9999996 57776663221 122459999999999999999999999976543321
Q ss_pred -CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh--------------------
Q 042735 553 -NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN-------------------- 605 (667)
Q Consensus 553 -~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~-------------------- 605 (667)
......||+.|+||| |+.++|||||||++|||++|+.||..............
T Consensus 242 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~ 321 (392)
T PHA03207 242 PQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNL 321 (392)
T ss_pred ccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhH
Confidence 123467999999999 56789999999999999999999743221100000000
Q ss_pred -hh---hccccCCCCCCCCCc-hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 606 -MR---LDEMLDPRLPPPSPD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 606 -~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.. ......+....+... .......+.+++.+||..+|++|||+.|++.+.||...
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~p~f~~~ 381 (392)
T PHA03207 322 CKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSLPLFTKE 381 (392)
T ss_pred HHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhhCchhhcc
Confidence 00 000000101000000 00112345678889999999999999999999999754
|
|
| >KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=251.24 Aligned_cols=224 Identities=21% Similarity=0.327 Sum_probs=178.3
Q ss_pred CcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|+..+.||+|.|++|-.|++ =.|..||||++.+... +.....++++|++.|+-+.|||||++|.+...+..+|+|.|
T Consensus 20 YDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKl--D~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLE 97 (864)
T KOG4717|consen 20 YDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKL--DTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILE 97 (864)
T ss_pred ehhhhhhcCCceehhhhhhhhcccceeEEEEeccccc--chhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEE
Confidence 56667899999999999975 4688999999977543 23445678999999999999999999999999999999999
Q ss_pred ecCCCChHHHhcccc--CC-----------------------cccccccCCeee-cCCCceEEecccccccccCCCCCcc
Q 042735 502 YLKRGSLATNLSNDA--AA-----------------------EELDISSKNVLL-DLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 502 y~~~g~L~~~l~~~~--~~-----------------------~~~dlk~~NiLl-d~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
.-++|+|++++..+. .. .|.||||+||.+ ..-|-+|+.|||++-.+.+.. ..+
T Consensus 98 LGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~-kL~ 176 (864)
T KOG4717|consen 98 LGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGK-KLT 176 (864)
T ss_pred ecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeeecCceEeeeccccccCCCcc-hhh
Confidence 999999999986542 11 134999999876 567899999999998776654 457
Q ss_pred cccccccccCCC------CC-CCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 556 ALVGTYRYVAPD------YR-KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~~-~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
++||+..|-||| |+ +++||||+|||||.|+.|++||....+- ..+..++|.....|.. ...
T Consensus 177 TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDS--------ETLTmImDCKYtvPsh----vS~ 244 (864)
T KOG4717|consen 177 TSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDS--------ETLTMIMDCKYTVPSH----VSK 244 (864)
T ss_pred cccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccch--------hhhhhhhcccccCchh----hhH
Confidence 799999999999 54 5899999999999999999998744321 1233455655443322 123
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
++.+++..++..||.+|.+.+||+...|...+.
T Consensus 245 eCrdLI~sMLvRdPkkRAslEeI~s~~Wlq~~D 277 (864)
T KOG4717|consen 245 ECRDLIQSMLVRDPKKRASLEEIVSTSWLQAGD 277 (864)
T ss_pred HHHHHHHHHHhcCchhhccHHHHhccccccCCC
Confidence 466788899999999999999999988876543
|
|
| >cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-29 Score=256.54 Aligned_cols=234 Identities=21% Similarity=0.259 Sum_probs=164.6
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC--Cce
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA--RHS 496 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~--~~~ 496 (667)
.++|+..+.||+|+||.||+|... ++..+|+|+++..... ......+.+|+.++++++||||+++++++... ...
T Consensus 4 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~ 81 (293)
T cd07843 4 VDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEK--EGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKI 81 (293)
T ss_pred hhhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeecccc--ccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcE
Confidence 457888899999999999999875 5788999988643221 12234577899999999999999999999877 889
Q ss_pred EEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
++||||+++ +|.+.+..... ..|.||||+||+++.++.+||+|||+++......
T Consensus 82 ~lv~e~~~~-~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~ 160 (293)
T cd07843 82 YMVMEYVEH-DLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPL 160 (293)
T ss_pred EEEehhcCc-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCceeeccCCc
Confidence 999999984 88776643211 1234999999999999999999999998765433
Q ss_pred CCcccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh-------------------
Q 042735 552 SNWSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN------------------- 605 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~------------------- 605 (667)
.......+++.|+|||+ +.++|||||||++|||++|+.||..............
T Consensus 161 ~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (293)
T cd07843 161 KPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGA 240 (293)
T ss_pred cccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccchh
Confidence 33344568899999993 4579999999999999999999753221100000000
Q ss_pred --hhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 606 --MRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 606 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..........+....+.. .....+.+++.+||+.+|++|||+.|++.+.||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~l~~~p~~R~t~~ell~~~~f 293 (293)
T cd07843 241 KKKTFTKYPYNQLRKKFPAL-SLSDNGFDLLNRLLTYDPAKRISAEDALKHPYF 293 (293)
T ss_pred cccccccccchhhhcccccc-CCChHHHHHHHHHhccCccccCCHHHHhcCCCC
Confidence 000000000000000000 012245678889999999999999999988664
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the |
| >KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-29 Score=249.89 Aligned_cols=232 Identities=26% Similarity=0.453 Sum_probs=170.1
Q ss_pred CCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHH--hcCCCCeeEEEEEEEeCC----c
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT--KIRHRNIVKFYGFCSHAR----H 495 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~--~l~H~niv~~~g~~~~~~----~ 495 (667)
.....++||+|+||.||+|.+.+ +.||||++.. .+.+.|..|-+|.+ .++|+||++|+++-.... +
T Consensus 211 pl~l~eli~~Grfg~V~KaqL~~-~~VAVKifp~-------~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~e 282 (534)
T KOG3653|consen 211 PLQLLELIGRGRFGCVWKAQLDN-RLVAVKIFPE-------QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRME 282 (534)
T ss_pred chhhHHHhhcCccceeehhhccC-ceeEEEecCH-------HHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccc
Confidence 34455678999999999999855 7899999863 34567888888766 678999999999877655 8
Q ss_pred eEEEEEecCCCChHHHhcccc--------------------------------CCcccccccCCeeecCCCceEEecccc
Q 042735 496 SILIYEYLKRGSLATNLSNDA--------------------------------AAEELDISSKNVLLDLEHKAHVSDFGI 543 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~--------------------------------~~~~~dlk~~NiLld~~~~~kl~DFGl 543 (667)
++||+||-++|+|.++|.... ...|+|||++|||+..|++.-|+|||+
T Consensus 283 ywLVt~fh~kGsL~dyL~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGL 362 (534)
T KOG3653|consen 283 YWLVTEFHPKGSLCDYLKANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGL 362 (534)
T ss_pred eeEEeeeccCCcHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccce
Confidence 999999999999998875321 223569999999999999999999999
Q ss_pred cccccCCCCC--cccccccccccCCCC-------C-----CCchHHHHHHHHHHHHhCCCCC--C--------CCccCCC
Q 042735 544 AKFLKPDSSN--WSALVGTYRYVAPDY-------R-----KKCDVYSFRVLALEVIKGKHPR--G--------FVSSILP 599 (667)
Q Consensus 544 a~~~~~~~~~--~~~~~Gt~~y~aPE~-------~-----~~~DV~sfGvvl~ElltG~~p~--~--------~~~~~~~ 599 (667)
|..+.++... ....+||.+|||||. . .+.||||+|.|||||+++..-. + +...+..
T Consensus 363 Al~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~ 442 (534)
T KOG3653|consen 363 ALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGN 442 (534)
T ss_pred eEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcC
Confidence 9987754322 233689999999993 1 2579999999999999875322 1 0111111
Q ss_pred Chhhhh---hhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 600 SPSVIN---MRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 600 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
.+...+ ..+++...|.++...... ..+..+.+.+..||+.||+.|-|++=|.++.+......
T Consensus 443 hPt~e~mq~~VV~kK~RP~~p~~W~~h-~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~~ 507 (534)
T KOG3653|consen 443 HPTLEEMQELVVRKKQRPKIPDAWRKH-AGMAVLCETIEECWDHDAEARLTAGCVEERMAELMMLW 507 (534)
T ss_pred CCCHHHHHHHHHhhccCCCChhhhhcC-ccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhccC
Confidence 222222 223333445555443332 34566778888999999999999998888877665443
|
|
| >cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=252.03 Aligned_cols=223 Identities=22% Similarity=0.429 Sum_probs=161.1
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCc----eEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKE----FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~----~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
.+|+..+.||+|+||.||+|... ++. .+|+|.+..... .....++.+|+.++++++||||++++|++... .
T Consensus 7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~ 82 (303)
T cd05110 7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTG---PKANVEFMDEALIMASMDHPHLVRLLGVCLSP-T 82 (303)
T ss_pred hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCC---HHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-C
Confidence 46778889999999999999753 343 468887654321 22334689999999999999999999998764 4
Q ss_pred eEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
.++++||+++|+|.+.+.... ...|.||||+||+++.++.+||+|||+++.....
T Consensus 83 ~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~ 162 (303)
T cd05110 83 IQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGD 162 (303)
T ss_pred ceeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhcCeeccccccceeeecCCCceEEccccccccccCc
Confidence 678999999999988775421 1123499999999999999999999999876533
Q ss_pred CCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 551 SSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 551 ~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
... .....++..|+||| ++.++|||||||++|||+| |+.||..... ..... .... ....+.+ +
T Consensus 163 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~----~~~~~-~~~~--~~~~~~~-~ 234 (303)
T cd05110 163 EKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPT----REIPD-LLEK--GERLPQP-P 234 (303)
T ss_pred ccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCH----HHHHH-HHHC--CCCCCCC-C
Confidence 221 12234577899999 3568999999999999998 8888753210 11111 1111 1111111 1
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.....+.+++.+||..+|++||+++++++.+...
T Consensus 235 ---~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~ 268 (303)
T cd05110 235 ---ICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRM 268 (303)
T ss_pred ---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 1123567888899999999999999999987764
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin |
| >PLN00009 cyclin-dependent kinase A; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-29 Score=254.74 Aligned_cols=238 Identities=22% Similarity=0.297 Sum_probs=166.1
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|++|.||+|... +++.+|+|++...... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 79 (294)
T PLN00009 2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQED--EGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLV 79 (294)
T ss_pred CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhcccc--ccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEE
Confidence 57888899999999999999864 6788999987543221 12235688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc--------------------------CCcccccccCCeeecC-CCceEEecccccccccCCCC
Q 042735 500 YEYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDL-EHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~-~~~~kl~DFGla~~~~~~~~ 552 (667)
|||++ +++.+.+.... ...|.||||+||+++. ++.+||+|||+++.......
T Consensus 80 ~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~ 158 (294)
T PLN00009 80 FEYLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVR 158 (294)
T ss_pred Eeccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEcccccccccCCCcc
Confidence 99996 46765553211 1123499999999985 56799999999986543333
Q ss_pred CcccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhh---hccc-----------
Q 042735 553 NWSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR---LDEM----------- 611 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~---~~~~----------- 611 (667)
..+...|++.|+|||+ +.++|||||||++|||+||+.||................ ....
T Consensus 159 ~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (294)
T PLN00009 159 TFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYK 238 (294)
T ss_pred ccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchhhh
Confidence 3344568899999993 457999999999999999999985322100000000000 0000
Q ss_pred -cCCCCCCCCC--chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 612 -LDPRLPPPSP--DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 612 -~~~~~~~~~~--~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
..+..+.... ........+.+++.+|++.+|++||++.+++++.||..+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~~~~~~~~~ 291 (294)
T PLN00009 239 SAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALEHEYFKDLG 291 (294)
T ss_pred hhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhcCchHhHHh
Confidence 0000000000 0001122466788899999999999999999999987654
|
|
| >cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=248.50 Aligned_cols=215 Identities=26% Similarity=0.453 Sum_probs=156.7
Q ss_pred eeecccCeEEEEEEeCC-------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 428 CIGSGRHGSVYRAELPS-------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 428 ~lg~g~~g~vy~~~~~~-------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
.||+|+||.||+|...+ +..+|+|.+..... ......|.+|+.++++++||||++++|++...+..++||
T Consensus 2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 78 (269)
T cd05044 2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGAT---DQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIM 78 (269)
T ss_pred ccccccceeEEeeeecccccCcccceeehhhhhhcccc---hhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEE
Confidence 58999999999997643 24688898754321 123457899999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC-------------------------------CcccccccCCeeecCCC-----ceEEeccccc
Q 042735 501 EYLKRGSLATNLSNDAA-------------------------------AEELDISSKNVLLDLEH-----KAHVSDFGIA 544 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~-------------------------------~~~~dlk~~NiLld~~~-----~~kl~DFGla 544 (667)
||+++|+|.+++..... ..|.|+||+||+++.++ .+|++|||++
T Consensus 79 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~ 158 (269)
T cd05044 79 ELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLA 158 (269)
T ss_pred eccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCcccc
Confidence 99999999988753210 11239999999999877 8999999999
Q ss_pred ccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCC
Q 042735 545 KFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPR 615 (667)
Q Consensus 545 ~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (667)
+....... ......++..|+||| ++.++|||||||++|||+| |+.||..... .... ..... ...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~----~~~~-~~~~~--~~~ 231 (269)
T cd05044 159 RDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNN----QEVL-QHVTA--GGR 231 (269)
T ss_pred cccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCH----HHHH-HHHhc--CCc
Confidence 86533211 112234578899999 3678999999999999998 9999753221 0100 00000 011
Q ss_pred CCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 616 LPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
...+ .. ....+.+++.+||+.+|++||++.+|.+.|.
T Consensus 232 ~~~~-~~---~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~ 268 (269)
T cd05044 232 LQKP-EN---CPDKIYQLMTNCWAQDPSERPTFDRIQEILQ 268 (269)
T ss_pred cCCc-cc---chHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence 1111 11 1235678889999999999999999998875
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male |
| >cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=253.03 Aligned_cols=235 Identities=23% Similarity=0.328 Sum_probs=171.2
Q ss_pred CCcCcceeecccCeEEEEEEe----CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCce
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHS 496 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~----~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~ 496 (667)
+|+..+.||+|+||.||+|+. .++..+|+|.+............+.+.+|++++.+++ ||||+++++++..+...
T Consensus 1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~ 80 (290)
T cd05613 1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL 80 (290)
T ss_pred CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence 366778899999999999975 3678899998864322222233456889999999995 99999999999999999
Q ss_pred EEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCC-
Q 042735 497 ILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS- 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~- 551 (667)
++||||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++......
T Consensus 81 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~ 160 (290)
T cd05613 81 HLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEV 160 (290)
T ss_pred EEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCccceecccccc
Confidence 999999999999887753211 1134999999999999999999999998654322
Q ss_pred CCcccccccccccCCCC--------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 552 SNWSALVGTYRYVAPDY--------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE~--------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
.......|+..|+|||+ +.++|||||||++|||+||+.|+............. ........+.+ ..
T Consensus 161 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~----~~~~~~~~~~~-~~- 234 (290)
T cd05613 161 ERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEIS----RRILKSEPPYP-QE- 234 (290)
T ss_pred cccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHH----HHhhccCCCCC-cc-
Confidence 12234578999999993 357999999999999999999986322111111111 11111111111 11
Q ss_pred HHHHHHHHHHHHhccccCCCCCC-----CHHHHHHHHHHhhhhhcc
Q 042735 624 QGKLISIMEVAFSCLDVSPESRP-----TMQTITQQLLFSLVYFSY 664 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~~~ 664 (667)
....+.+++.+||+.+|++|| ++++++.+.++....|++
T Consensus 235 --~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~~~~ 278 (290)
T cd05613 235 --MSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQKINWDD 278 (290)
T ss_pred --CCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHcCcccccCCHHH
Confidence 112456788899999999997 889999998887766543
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=249.55 Aligned_cols=232 Identities=20% Similarity=0.321 Sum_probs=164.4
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|++|.||+|+.. ++..+|||++...... ...+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 77 (284)
T cd07836 1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEE---GTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVF 77 (284)
T ss_pred CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccc---cchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEE
Confidence 4778889999999999999874 5788999988653221 12345778999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc---------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 501 EYLKRGSLATNLSNDA---------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~---------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
||+++ +|.+++.... ...|.|+||+||++++++.+|++|||+++........
T Consensus 78 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~~ 156 (284)
T cd07836 78 EYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNT 156 (284)
T ss_pred ecCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCccc
Confidence 99995 7776654321 0113399999999999999999999999865433222
Q ss_pred cccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh----------hhhc--cccCC
Q 042735 554 WSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN----------MRLD--EMLDP 614 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~----------~~~~--~~~~~ 614 (667)
.....+|+.|+|||+ +.++|||||||++|||+||+.||.............. .... .....
T Consensus 157 ~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (284)
T cd07836 157 FSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKP 236 (284)
T ss_pred cccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhcc
Confidence 334567899999992 5679999999999999999999863321100000000 0000 00001
Q ss_pred CCCCCCCchH-----HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 615 RLPPPSPDVQ-----GKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 615 ~~~~~~~~~~-----~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..+....... .....+.+++.+|++.+|++||++.|++++.||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~~~f 284 (284)
T cd07836 237 TFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQHPWF 284 (284)
T ss_pred cccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence 1111100000 112346688889999999999999999987664
|
Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. |
| >cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=248.90 Aligned_cols=224 Identities=20% Similarity=0.250 Sum_probs=159.5
Q ss_pred eeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHH---HHhcCCCCeeEEEEEEEeCCceEEEEEec
Q 042735 428 CIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEA---LTKIRHRNIVKFYGFCSHARHSILIYEYL 503 (667)
Q Consensus 428 ~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~---l~~l~H~niv~~~g~~~~~~~~~lv~ey~ 503 (667)
.||+|+||.||+|.. .++..+|+|.+........ .....+.+|..+ +...+||||+.+++++..++..++||||+
T Consensus 1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~ 79 (279)
T cd05633 1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMK-QGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLM 79 (279)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEEEccccccc-hHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecC
Confidence 479999999999986 4578899998764332211 112234445443 33457999999999999999999999999
Q ss_pred CCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcccccc
Q 042735 504 KRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559 (667)
Q Consensus 504 ~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~G 559 (667)
++|+|.+++.... ...|.||||+||+++.++.+|++|||++....... .....|
T Consensus 80 ~~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~ 157 (279)
T cd05633 80 NGGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK--PHASVG 157 (279)
T ss_pred CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcceeccccC--ccCcCC
Confidence 9999987765321 11244999999999999999999999997543222 233579
Q ss_pred cccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHH
Q 042735 560 TYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632 (667)
Q Consensus 560 t~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (667)
|+.|+||| ++.++|||||||++|||+||+.||...... ........ ....+..++... ...+.+
T Consensus 158 ~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~--~~~~~~~~-~~~~~~~~~~~~------~~~~~~ 228 (279)
T cd05633 158 THGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK--DKHEIDRM-TLTVNVELPDSF------SPELKS 228 (279)
T ss_pred CcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCc--CHHHHHHH-hhcCCcCCcccc------CHHHHH
Confidence 99999999 345789999999999999999998532211 11111110 011122222211 124567
Q ss_pred HHHhccccCCCCCC-----CHHHHHHHHHHhhhhhc
Q 042735 633 VAFSCLDVSPESRP-----TMQTITQQLLFSLVYFS 663 (667)
Q Consensus 633 ~~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~~ 663 (667)
++.+||..+|++|| |++|++++.||....|.
T Consensus 229 li~~~l~~~p~~R~~~~~~~~~~~~~h~~~~~~~~~ 264 (279)
T cd05633 229 LLEGLLQRDVSKRLGCLGRGAQEVKEHVFFKGIDWQ 264 (279)
T ss_pred HHHHHhcCCHHHhcCCCCCCHHHHHhCccccCCCHh
Confidence 78899999999999 69999999999876543
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi |
| >cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=245.16 Aligned_cols=221 Identities=20% Similarity=0.361 Sum_probs=164.6
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|+||.||+|.. .++..+|||.+...... ....+.+.+|++++++++||||+++++++...+..++||
T Consensus 1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ 78 (256)
T cd08220 1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMT--KDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVM 78 (256)
T ss_pred CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccc--cHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEE
Confidence 467788999999999999976 46778999988643222 233567999999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC--------------------------CcccccccCCeeecCC-CceEEecccccccccCCCCC
Q 042735 501 EYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLE-HKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~-~~~kl~DFGla~~~~~~~~~ 553 (667)
||+++++|.+++..... ..|.||||+||+++.+ +.+|++|||+++.......
T Consensus 79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~- 157 (256)
T cd08220 79 EYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSK- 157 (256)
T ss_pred ecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCcc-
Confidence 99999999888754211 1123999999999854 5689999999987653322
Q ss_pred cccccccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 554 WSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
.....|+..|+|||+ +.++|||||||++|||++|+.|+..... ........... ....+.. ..
T Consensus 158 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~------~~ 226 (256)
T cd08220 158 AYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANL----PALVLKIMSGT-FAPISDR------YS 226 (256)
T ss_pred ccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCch----HHHHHHHHhcC-CCCCCCC------cC
Confidence 233568999999993 5689999999999999999999753221 11111111110 0111111 12
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
..+.+++.+||+.+|++|||+.|++++.+
T Consensus 227 ~~l~~li~~~l~~~p~~Rpt~~~ll~~p~ 255 (256)
T cd08220 227 PDLRQLILSMLNLDPSKRPQLSQIMAQPI 255 (256)
T ss_pred HHHHHHHHHHccCChhhCCCHHHHhhCCC
Confidence 24667888999999999999999998754
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with |
| >KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-29 Score=266.17 Aligned_cols=231 Identities=23% Similarity=0.390 Sum_probs=176.6
Q ss_pred HHHHHHHHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEE
Q 042735 413 YVEIIRAINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFC 490 (667)
Q Consensus 413 ~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~ 490 (667)
++.+-..++-|++.++||.|.+|.||+++. +.++..|||+...... ..++...|.++++... |||++.+||++
T Consensus 11 ~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d-----~deEiE~eynil~~~~~hpnv~~fyg~~ 85 (953)
T KOG0587|consen 11 LSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTED-----EEEEIELEYNMLKKYSHHPNVATFYGAF 85 (953)
T ss_pred hhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCcc-----ccHHHHHHHHHHHhccCCCCcceEEEEE
Confidence 333444567788999999999999999974 5677888888654322 2345667888888775 99999999999
Q ss_pred Ee-----CCceEEEEEecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEe
Q 042735 491 SH-----ARHSILIYEYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVS 539 (667)
Q Consensus 491 ~~-----~~~~~lv~ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~ 539 (667)
.. ++++|+|||||.+||.-+.+..-. ...|.|+|-.|||++.++.||+.
T Consensus 86 ~k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~~VKLv 165 (953)
T KOG0587|consen 86 IKKDPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENAEVKLV 165 (953)
T ss_pred EEecCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccCcEEEe
Confidence 64 679999999999999877654311 11244999999999999999999
Q ss_pred cccccccccCCCCCcccccccccccCCC-----------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhh
Q 042735 540 DFGIAKFLKPDSSNWSALVGTYRYVAPD-----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRL 608 (667)
Q Consensus 540 DFGla~~~~~~~~~~~~~~Gt~~y~aPE-----------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~ 608 (667)
|||++..+........+++|||.||||| |+..+|+||+|++..||..|.+|....- + ++.
T Consensus 166 DFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmH---P------mra 236 (953)
T KOG0587|consen 166 DFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMH---P------MRA 236 (953)
T ss_pred eeeeeeeeecccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcc---h------hhh
Confidence 9999998877666667889999999998 6778999999999999999999953211 1 111
Q ss_pred ccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 609 DEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
--.+.+..|+..........++.+++..|+.+|-++||++.+++++.+-
T Consensus 237 LF~IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~hpFi 285 (953)
T KOG0587|consen 237 LFLIPRNPPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEELLKHPFI 285 (953)
T ss_pred hccCCCCCCccccchhhHHHHHHHHHHHHHhhccccCcchhhhccCCcc
Confidence 1111222222223334556688899999999999999999999988654
|
|
| >KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-29 Score=242.72 Aligned_cols=237 Identities=22% Similarity=0.327 Sum_probs=169.2
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCC-eeEEEEEEEeCC----
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN-IVKFYGFCSHAR---- 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n-iv~~~g~~~~~~---- 494 (667)
..|+..+.||+|.||+||+|+. .+|..||+|++....... .......+|+.++.+++|+| ||.+++++....
T Consensus 11 ~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~E--G~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~ 88 (323)
T KOG0594|consen 11 FDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEE--GVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRG 88 (323)
T ss_pred HHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEecccccc--CCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccc
Confidence 4455667799999999999974 668899999987543211 12345689999999999999 999999998877
Q ss_pred --ceEEEEEecCCCChHHHhcccc----------------------------CCcccccccCCeeecCCCceEEeccccc
Q 042735 495 --HSILIYEYLKRGSLATNLSNDA----------------------------AAEELDISSKNVLLDLEHKAHVSDFGIA 544 (667)
Q Consensus 495 --~~~lv~ey~~~g~L~~~l~~~~----------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla 544 (667)
..++|+||++. +|.+++.... ...|.||||+|||++++|.+||+|||+|
T Consensus 89 ~~~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlA 167 (323)
T KOG0594|consen 89 IGKLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLA 167 (323)
T ss_pred cceEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchH
Confidence 78999999874 6655554321 1224599999999999999999999999
Q ss_pred ccccCCCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC---------Chhhhhh-h
Q 042735 545 KFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP---------SPSVINM-R 607 (667)
Q Consensus 545 ~~~~~~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~---------~~~~~~~-~ 607 (667)
+...-.....+..++|..|-||| |....|+||+|||+.||+++++-|...+.... .+..... .
T Consensus 168 ra~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~ 247 (323)
T KOG0594|consen 168 RAFSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWPG 247 (323)
T ss_pred HHhcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCCC
Confidence 97765555567788999999999 78899999999999999998876543222100 0000000 0
Q ss_pred hccccC--CCCCC---CCCc---hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 608 LDEMLD--PRLPP---PSPD---VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 608 ~~~~~~--~~~~~---~~~~---~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.....+ +..+. +.+- .........+++..|++.+|.+|.|+..++.|.+|...
T Consensus 248 v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~ 308 (323)
T KOG0594|consen 248 VSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTHPYFSEL 308 (323)
T ss_pred ccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcChhhccc
Confidence 000000 01110 0000 00111356678889999999999999999999888654
|
|
| >cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-29 Score=249.14 Aligned_cols=207 Identities=25% Similarity=0.458 Sum_probs=151.4
Q ss_pred eeecccCeEEEEEEeCC-C-------ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 428 CIGSGRHGSVYRAELPS-K-------EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 428 ~lg~g~~g~vy~~~~~~-~-------~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
.||+|+||.||+|.... + ..+|+|.+... .....+.|.+|+.+++.++|||||++++++..++..++|
T Consensus 2 ~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~----~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv 77 (258)
T cd05078 2 SLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKS----HRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMV 77 (258)
T ss_pred CCCcccchhheeeeecccccccccccchhhHHhhcch----hHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEE
Confidence 58999999999997532 2 23777765432 223345788999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCc--------eEEeccccccc
Q 042735 500 YEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHK--------AHVSDFGIAKF 546 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~--------~kl~DFGla~~ 546 (667)
|||+++|+|.+++..... ..|.||||+||+++.++. +|++|||++..
T Consensus 78 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~ 157 (258)
T cd05078 78 QEYVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISIT 157 (258)
T ss_pred EecCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEecccccccc
Confidence 999999999988864321 113499999999987765 59999999875
Q ss_pred ccCCCCCcccccccccccCCCC-------CCCchHHHHHHHHHHHHhCC-CCCCCCccCCCChhhhhhhhccccCCCCCC
Q 042735 547 LKPDSSNWSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGK-HPRGFVSSILPSPSVINMRLDEMLDPRLPP 618 (667)
Q Consensus 547 ~~~~~~~~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (667)
... .....|++.|+|||+ +.++|||||||++|||++|. .|+..... ..... .... ...++.
T Consensus 158 ~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~----~~~~~-~~~~--~~~~~~ 226 (258)
T cd05078 158 VLP----KEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDS----QKKLQ-FYED--RHQLPA 226 (258)
T ss_pred cCC----chhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccH----HHHHH-HHHc--cccCCC
Confidence 432 223578899999993 45799999999999999995 55432111 00000 0000 112222
Q ss_pred CCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHH
Q 042735 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655 (667)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l 655 (667)
.. ..++.+++.+||+.+|++|||++++++.|
T Consensus 227 ~~------~~~~~~li~~~l~~~p~~Rps~~~il~~l 257 (258)
T cd05078 227 PK------WTELANLINQCMDYEPDFRPSFRAIIRDL 257 (258)
T ss_pred CC------cHHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence 11 12467888999999999999999999875
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity |
| >PTZ00284 protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=269.64 Aligned_cols=235 Identities=17% Similarity=0.219 Sum_probs=159.9
Q ss_pred HHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCC------CCeeEEEEEEE
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH------RNIVKFYGFCS 491 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H------~niv~~~g~~~ 491 (667)
..++|...+.||+|+||.||+|.. ..++.||||++.... ...+.+..|++++.+++| ++++++++++.
T Consensus 127 ~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-----~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~ 201 (467)
T PTZ00284 127 STQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-----KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQ 201 (467)
T ss_pred CCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch-----hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEE
Confidence 457899999999999999999976 457789999985421 122345667777776655 45899999887
Q ss_pred eC-CceEEEEEecCCCChHHHhccc-------------------------cCCcccccccCCeeecCCC-----------
Q 042735 492 HA-RHSILIYEYLKRGSLATNLSND-------------------------AAAEELDISSKNVLLDLEH----------- 534 (667)
Q Consensus 492 ~~-~~~~lv~ey~~~g~L~~~l~~~-------------------------~~~~~~dlk~~NiLld~~~----------- 534 (667)
.. ...++||||+ +++|.+++... ....|.||||+|||++.++
T Consensus 202 ~~~~~~~iv~~~~-g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~ 280 (467)
T PTZ00284 202 NETGHMCIVMPKY-GPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRAL 280 (467)
T ss_pred cCCceEEEEEecc-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCccccccccccc
Confidence 65 4688999987 56776654321 1234569999999998765
Q ss_pred -----ceEEecccccccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC----
Q 042735 535 -----KAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP---- 599 (667)
Q Consensus 535 -----~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~---- 599 (667)
.+||+|||.+.... ...+..+||+.||||| |+.++|||||||++|||+||+.||........
T Consensus 281 ~~~~~~vkl~DfG~~~~~~---~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i 357 (467)
T PTZ00284 281 PPDPCRVRICDLGGCCDER---HSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLM 357 (467)
T ss_pred CCCCceEEECCCCccccCc---cccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Confidence 49999999886432 2234578999999999 57789999999999999999999863221100
Q ss_pred ------Chhhhhh-----hhcccc------CCCCCCC--------C-CchHHHHHHHHHHHHhccccCCCCCCCHHHHHH
Q 042735 600 ------SPSVINM-----RLDEML------DPRLPPP--------S-PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653 (667)
Q Consensus 600 ------~~~~~~~-----~~~~~~------~~~~~~~--------~-~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~ 653 (667)
.+..... ....+. .+...+. . ......-..+.+++.+||+.||++|||++|+++
T Consensus 358 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~ 437 (467)
T PTZ00284 358 EKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTT 437 (467)
T ss_pred HHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhc
Confidence 0000000 000000 0000000 0 000001124668999999999999999999999
Q ss_pred HHHHhhhhh
Q 042735 654 QLLFSLVYF 662 (667)
Q Consensus 654 ~l~~~~~~~ 662 (667)
|.|+...+.
T Consensus 438 Hp~~~~~~~ 446 (467)
T PTZ00284 438 HPYVLKYYP 446 (467)
T ss_pred CccccccCC
Confidence 999976543
|
|
| >PHA03209 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=259.38 Aligned_cols=228 Identities=17% Similarity=0.230 Sum_probs=158.0
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
..+|...+.||+|+||.||+|... .+..||+|..... ....|+.++++++|||||++++++.+....++
T Consensus 65 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~----------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 134 (357)
T PHA03209 65 SLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG----------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCM 134 (357)
T ss_pred hcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc----------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEE
Confidence 357999999999999999999875 4667888874321 23468999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 499 IYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
||||+. |+|.+++.... ...|.||||+|||++.++.+||+|||+++..... ..
T Consensus 135 v~e~~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~-~~ 212 (357)
T PHA03209 135 VLPHYS-SDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVA-PA 212 (357)
T ss_pred EEEccC-CcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCccccccccC-cc
Confidence 999996 57777664321 1123499999999999999999999999854322 22
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCC-CCCccCCCCh-hhhhhhhcc------ccCCCCCC-
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPR-GFVSSILPSP-SVINMRLDE------MLDPRLPP- 618 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~-~~~~~~~~~~-~~~~~~~~~------~~~~~~~~- 618 (667)
.....||+.|+||| |+.++|||||||++|||+++..|+ .......... ......+.. .....++.
T Consensus 213 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 292 (357)
T PHA03209 213 FLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRD 292 (357)
T ss_pred cccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCC
Confidence 23467999999999 467899999999999999976553 2110000000 000000000 00000000
Q ss_pred ------------------CCCc--h---HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 619 ------------------PSPD--V---QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 619 ------------------~~~~--~---~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
+... . ........+++.+||+.||++|||+.|++++.||..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rpta~e~l~hp~f~~ 356 (357)
T PHA03209 293 PGSRLVRGFIEYASLERQPYTRYPCFQRVNLPIDGEFLVHKMLTFDAAMRPSAEEILNYPMFAQ 356 (357)
T ss_pred CccHHHHHHHhhcccCCCcccccHHHhccCCCchHHHHHHHHHcCCcccCcCHHHHhcCchhcc
Confidence 0000 0 001123445788999999999999999999999853
|
|
| >cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=251.93 Aligned_cols=221 Identities=24% Similarity=0.371 Sum_probs=162.4
Q ss_pred CcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|+..+.||+|+||.||+|.. .++..+|+|++...... .....+.+.+|++++++++|||+|++++++.+.+..++|||
T Consensus 27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 105 (317)
T cd06635 27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQ-SNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVME 105 (317)
T ss_pred hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCC-chHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEe
Confidence 55677899999999999986 45788999987643221 22334578899999999999999999999999999999999
Q ss_pred ecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 502 YLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 502 y~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
|+++ ++.+.+.... ...|.||+|+||+++.++.+||+|||++...... ..
T Consensus 106 ~~~g-~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~----~~ 180 (317)
T cd06635 106 YCLG-SASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIASPA----NS 180 (317)
T ss_pred CCCC-CHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCCccccCCc----cc
Confidence 9974 6665543211 1123499999999999999999999998764432 24
Q ss_pred ccccccccCCCC---------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 557 LVGTYRYVAPDY---------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 557 ~~Gt~~y~aPE~---------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
..|++.|+|||+ +.++|||||||++|||++|+.|+...... .... .......+..... ...
T Consensus 181 ~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~----~~~~----~~~~~~~~~~~~~--~~~ 250 (317)
T cd06635 181 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM----SALY----HIAQNESPTLQSN--EWS 250 (317)
T ss_pred ccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHH----HHHH----HHHhccCCCCCCc--ccc
Confidence 578999999994 34789999999999999999997532110 0000 1111111111111 112
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..+.+++.+||+.+|.+||++.+|++++++..
T Consensus 251 ~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~ 282 (317)
T cd06635 251 DYFRNFVDSCLQKIPQDRPTSEELLKHMFVLR 282 (317)
T ss_pred HHHHHHHHHHccCCcccCcCHHHHHhChhhhc
Confidence 24677888999999999999999999987653
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron |
| >cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4 | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-28 Score=245.32 Aligned_cols=223 Identities=25% Similarity=0.400 Sum_probs=163.0
Q ss_pred cCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
++|+..+.||+|+||.||+|+.. ....+++|.+.... .....+.|.+|++++++++||||+++++++.+.+
T Consensus 5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 81 (275)
T cd05046 5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTK---DENLQSEFRRELDMFRKLSHKNVVRLLGLCREAE 81 (275)
T ss_pred HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCcc---chHHHHHHHHHHHHHHhcCCcceeeeEEEECCCC
Confidence 46788899999999999999853 23568888765421 1223467999999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhcccc---------C------------------------CcccccccCCeeecCCCceEEecc
Q 042735 495 HSILIYEYLKRGSLATNLSNDA---------A------------------------AEELDISSKNVLLDLEHKAHVSDF 541 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~---------~------------------------~~~~dlk~~NiLld~~~~~kl~DF 541 (667)
..++||||+++|+|.+++.... . ..|.||||+||+++.++.+|++||
T Consensus 82 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~~~ 161 (275)
T cd05046 82 PHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLL 161 (275)
T ss_pred cceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEEccc
Confidence 9999999999999998875432 0 012399999999999999999999
Q ss_pred cccccccCCC-CCcccccccccccCCCC------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccC
Q 042735 542 GIAKFLKPDS-SNWSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLD 613 (667)
Q Consensus 542 Gla~~~~~~~-~~~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~ 613 (667)
|+++...... .......++..|+|||+ ..++|||||||++|||++ |..||..... .............
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~----~~~~~~~~~~~~~ 237 (275)
T cd05046 162 SLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSD----EEVLNRLQAGKLE 237 (275)
T ss_pred ccccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccch----HHHHHHHHcCCcC
Confidence 9987543221 11233456788999993 457999999999999999 7778743211 1111111000111
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 614 PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
...+.. ....+.+++.+||+.+|++|||+.|+++.+.
T Consensus 238 ~~~~~~------~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~ 274 (275)
T cd05046 238 LPVPEG------CPSRLYKLMTRCWAVNPKDRPSFSELVSALG 274 (275)
T ss_pred CCCCCC------CCHHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence 111111 1125678888999999999999999998864
|
Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s |
| >cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=243.59 Aligned_cols=215 Identities=25% Similarity=0.439 Sum_probs=159.3
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|...+.||+|+||.||+|.. .+..+|+|++.... ..+.+.+|+.++++++|||++++++++... ..++||
T Consensus 6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~------~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~ 77 (254)
T cd05083 6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV------TAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVM 77 (254)
T ss_pred HHceeeeeeccCCCCceEeccc-CCCceEEEeecCcc------hHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEE
Confidence 5678889999999999999975 56679999875421 235688999999999999999999998764 478999
Q ss_pred EecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 501 EYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||+++|+|.+++..... ..|.|+||+||+++.++.+||+|||+++..... .
T Consensus 78 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~---~ 154 (254)
T cd05083 78 ELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMG---V 154 (254)
T ss_pred ECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCccceecccc---C
Confidence 99999999988754321 113399999999999999999999999764322 1
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
.....+..|+||| ++.++|||||||++|||++ |+.||..... ..... .......+..+ . ...
T Consensus 155 ~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~----~~~~~-~~~~~~~~~~~---~---~~~ 223 (254)
T cd05083 155 DNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSL----KEVKE-CVEKGYRMEPP---E---GCP 223 (254)
T ss_pred CCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCH----HHHHH-HHhCCCCCCCC---C---cCC
Confidence 2233456899999 3568999999999999998 9988753221 11111 11111111111 1 112
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..+.+++.+||+.+|++||+++++++.+..
T Consensus 224 ~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~ 253 (254)
T cd05083 224 ADVYVLMTSCWETEPKKRPSFHKLREKLEK 253 (254)
T ss_pred HHHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence 356788899999999999999999988753
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki |
| >cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=251.56 Aligned_cols=233 Identities=21% Similarity=0.321 Sum_probs=166.7
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|...+.||+|+||.||+|.. .++..+|||++....... ...+.+.+|+.++++++||||+++++++..+...++||
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~--~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~ 78 (286)
T cd07832 1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEG--GIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVM 78 (286)
T ss_pred CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccc--hhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEe
Confidence 466778899999999999986 467889999886543211 23457899999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC-Cc
Q 042735 501 EYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-NW 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~~ 554 (667)
||+ +++|.+.+.... ...|.||||+||+++.++.+||+|||+++....... ..
T Consensus 79 e~~-~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~ 157 (286)
T cd07832 79 EYM-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLY 157 (286)
T ss_pred ccc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCcc
Confidence 999 999988764321 112349999999999999999999999987654321 23
Q ss_pred ccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhh----------hhhh------ccc
Q 042735 555 SALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVI----------NMRL------DEM 611 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~----------~~~~------~~~ 611 (667)
....|+..|+|||+ +.++||||+||++|||+||++|+............. .... ..+
T Consensus 158 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (286)
T cd07832 158 SHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKI 237 (286)
T ss_pred ccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcchhhcc
Confidence 34578999999993 568999999999999999987764321100000000 0000 000
Q ss_pred cCCCCCC-CCCc-hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 612 LDPRLPP-PSPD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 612 ~~~~~~~-~~~~-~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..+.... +... .......+.+++.+|++.+|++|||+++++++.||
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h~~~ 285 (286)
T cd07832 238 TFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRHPYF 285 (286)
T ss_pred cCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhhCcCc
Confidence 0000000 0000 00112456788899999999999999999999876
|
Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea |
| >cd05122 PKc_STE Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=243.52 Aligned_cols=221 Identities=26% Similarity=0.427 Sum_probs=167.5
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|++|.||+|... ++..+++|++..... ...+.+.+|++.+++++|||++++++++......++++
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~----~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~ 76 (253)
T cd05122 1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK----EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVM 76 (253)
T ss_pred CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEE
Confidence 4677889999999999999875 678899999865322 24567899999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc--C-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 501 EYLKRGSLATNLSNDA--A-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~--~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
||+++++|.+.+.... . ..|.|++|+||+++.++.+||+|||.+........ ..
T Consensus 77 e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~-~~ 155 (253)
T cd05122 77 EFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA-RN 155 (253)
T ss_pred ecCCCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeecccccccccccc-cc
Confidence 9999999998775431 0 11239999999999999999999999987654432 23
Q ss_pred cccccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 556 ALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 556 ~~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
...|+..|+|||+ +.++||||||+++|||++|+.|+...... ...... .....+..+... .....
T Consensus 156 ~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~~~~--~~~~~~~~~~~~----~~~~~ 226 (253)
T cd05122 156 TMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPM---KALFKI--ATNGPPGLRNPE----KWSDE 226 (253)
T ss_pred ceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchH---HHHHHH--HhcCCCCcCccc----ccCHH
Confidence 4678999999993 67899999999999999999997633210 000000 011111111111 01234
Q ss_pred HHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 630 IMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
+.+++.+||+.+|++|||+.|++++.|
T Consensus 227 ~~~~i~~~l~~~p~~R~t~~~~l~~~~ 253 (253)
T cd05122 227 FKDFLKKCLQKNPEKRPTAEQLLKHPF 253 (253)
T ss_pred HHHHHHHHccCChhhCCCHHHHhcCCC
Confidence 677888999999999999999998643
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core |
| >cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=245.35 Aligned_cols=206 Identities=25% Similarity=0.424 Sum_probs=151.3
Q ss_pred ceeecccCeEEEEEEeCCCc-----------eEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 427 YCIGSGRHGSVYRAELPSKE-----------FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~~~~-----------~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
+.||+|+||.||+|...... .+++|.+.... . ....|.+|+.++++++||||++++|++.. ..
T Consensus 1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~----~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~ 74 (259)
T cd05037 1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDH----R-DSLAFFETASLMSQLSHKHLVKLYGVCVR-DE 74 (259)
T ss_pred CcccccccceEEEEEEeccCCccccCCccceeeeeeccccch----h-hHHHHHHHHHHHHcCCCcchhheeeEEec-CC
Confidence 35899999999999875433 36666654321 1 14678999999999999999999999988 77
Q ss_pred eEEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCC-------ceEEecccc
Q 042735 496 SILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEH-------KAHVSDFGI 543 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~-------~~kl~DFGl 543 (667)
.++||||+++|+|.+++..... ..|.||||+||+++.++ .+||+|||+
T Consensus 75 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~ 154 (259)
T cd05037 75 NIMVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGI 154 (259)
T ss_pred cEEEEEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCc
Confidence 8999999999999988754321 12349999999999888 799999999
Q ss_pred cccccCCCCCcccccccccccCCCC--------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCC
Q 042735 544 AKFLKPDSSNWSALVGTYRYVAPDY--------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDP 614 (667)
Q Consensus 544 a~~~~~~~~~~~~~~Gt~~y~aPE~--------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~ 614 (667)
++.... .....++..|+|||+ +.++|||||||++|||++ |..|+..... ..... .. . ...
T Consensus 155 a~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~---~~~~~--~~-~-~~~ 223 (259)
T cd05037 155 PITVLS----REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSS---SEKER--FY-Q-DQH 223 (259)
T ss_pred cccccc----ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCc---hhHHH--HH-h-cCC
Confidence 986543 123457788999994 347999999999999999 4666643221 00000 00 0 011
Q ss_pred CCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHH
Q 042735 615 RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655 (667)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l 655 (667)
..+.+.. ..+.+++.+||..+|++|||+.||++.|
T Consensus 224 ~~~~~~~------~~~~~li~~~l~~~p~~Rpt~~~il~~l 258 (259)
T cd05037 224 RLPMPDC------AELANLINQCWTYDPTKRPSFRAILRDL 258 (259)
T ss_pred CCCCCCc------hHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence 1111111 3567888999999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki |
| >smart00219 TyrKc Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-28 Score=242.10 Aligned_cols=219 Identities=27% Similarity=0.459 Sum_probs=161.3
Q ss_pred CcCcceeecccCeEEEEEEeCC-----CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 423 FDAKYCIGSGRHGSVYRAELPS-----KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~~-----~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
|+..+.||+|+||.||+|.... +..+|+|++..... ....+.+.+|++.+.+++||||+++++++.+.+..+
T Consensus 1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~ 77 (258)
T smart00219 1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDAD---EQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLM 77 (258)
T ss_pred CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCC---hHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeE
Confidence 3456789999999999998654 37799999864322 113567999999999999999999999999999999
Q ss_pred EEEEecCCCChHHHhccccC---C-----------------------cccccccCCeeecCCCceEEecccccccccCCC
Q 042735 498 LIYEYLKRGSLATNLSNDAA---A-----------------------EELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~---~-----------------------~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
++|||+++++|.+++..... . .|.||||+||+++.++.+||+|||+++......
T Consensus 78 ~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~ 157 (258)
T smart00219 78 IVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDD 157 (258)
T ss_pred EEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCceeccccc
Confidence 99999999999887754221 1 123999999999999999999999998765432
Q ss_pred CCcc-cccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 552 SNWS-ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 552 ~~~~-~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
.... ...+++.|+||| ++.++||||+|+++|||++ |+.|+.... ....... .........+. .
T Consensus 158 ~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~----~~~~~~~-~~~~~~~~~~~---~- 228 (258)
T smart00219 158 YYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMS----NEEVLEY-LKKGYRLPKPE---N- 228 (258)
T ss_pred ccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCC----HHHHHHH-HhcCCCCCCCC---c-
Confidence 2111 133778999999 4678999999999999999 778865311 1111111 00100011111 1
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHH
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l 655 (667)
....+.+++.+|+..+|++|||+.|+++.+
T Consensus 229 --~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l 258 (258)
T smart00219 229 --CPPEIYKLMLQCWAEDPEDRPTFSELVEIL 258 (258)
T ss_pred --CCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence 123567788899999999999999998753
|
Phosphotransferases. Tyrosine-specific kinase subfamily. |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=248.26 Aligned_cols=232 Identities=22% Similarity=0.318 Sum_probs=173.5
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~l 498 (667)
.||....+||+|+||.|..|+.+ +.+.+|||++++.+..++ .+.+.-+.|-++|+-- +-|.+|+++.++...+.+|.
T Consensus 349 tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQd-DDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyF 427 (683)
T KOG0696|consen 349 TDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQD-DDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYF 427 (683)
T ss_pred cccceEEEeccCccceeeeecccCcchhhhhhhhccceeeec-CcccceehhhhheecCCCCchHHHHHHHhhhhhheee
Confidence 58999999999999999999765 467899999987654333 2334455677777654 47999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||+.||+|..+++.-. .....|||.+||++|.+|++||+|||+++.---+....
T Consensus 428 VMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~~TT 507 (683)
T KOG0696|consen 428 VMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDGVTT 507 (683)
T ss_pred EEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeecccccccccCCcce
Confidence 999999999987775321 11123999999999999999999999999765556667
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
.++||||.|+||| |...+|+|||||+||||+.|++||+..+.. .....+.+.....+..-..
T Consensus 508 kTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~--------elF~aI~ehnvsyPKslSk---- 575 (683)
T KOG0696|consen 508 KTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDED--------ELFQAIMEHNVSYPKSLSK---- 575 (683)
T ss_pred eeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHH--------HHHHHHHHccCcCcccccH----
Confidence 7899999999999 678999999999999999999999754421 1122223322222221111
Q ss_pred HHHHHHHhccccCCCCCCC-----HHHHHHHHHHhhhhhccC
Q 042735 629 SIMEVAFSCLDVSPESRPT-----MQTITQQLLFSLVYFSYA 665 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt-----~~ev~~~l~~~~~~~~~~ 665 (667)
+.+.+...-+.+.|.+|-- -++|..|.+|..+.|+++
T Consensus 576 EAv~ickg~ltK~P~kRLGcg~~ge~di~~H~FFR~iDWek~ 617 (683)
T KOG0696|consen 576 EAVAICKGLLTKHPGKRLGCGPEGERDIREHPFFRRIDWEKL 617 (683)
T ss_pred HHHHHHHHHhhcCCccccCCCCccccchhhCcchhhccHHHH
Confidence 2334445567888998844 367888888887777643
|
|
| >cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=253.73 Aligned_cols=241 Identities=24% Similarity=0.283 Sum_probs=166.9
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC--Cce
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA--RHS 496 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~--~~~ 496 (667)
.++|+..+.||+|+||.||+|.. .+++.||+|++....... .....+.+|++++++++||||+++++++.+. +..
T Consensus 6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (309)
T cd07845 6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERD--GIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSI 83 (309)
T ss_pred ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCC--CCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeE
Confidence 46889999999999999999986 458889999875432211 1123467899999999999999999998765 468
Q ss_pred EEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
++||||+++ +|.+.+.... ...|.||||+||+++.++.+||+|||+++......
T Consensus 84 ~lv~e~~~~-~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~ 162 (309)
T cd07845 84 FLVMEYCEQ-DLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPA 162 (309)
T ss_pred EEEEecCCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccceeeecCCcc
Confidence 999999975 6766554311 11234999999999999999999999998765433
Q ss_pred CCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh-------h---hccc---
Q 042735 552 SNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM-------R---LDEM--- 611 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~-------~---~~~~--- 611 (667)
...+...+++.|+||| ++.++||||+||++|||++|+.||............... . ....
T Consensus 163 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (309)
T cd07845 163 KPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLV 242 (309)
T ss_pred CCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhhccccc
Confidence 3333345688899999 356899999999999999999998532211000000000 0 0000
Q ss_pred cCCCCCC-CCCchH----HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 612 LDPRLPP-PSPDVQ----GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 612 ~~~~~~~-~~~~~~----~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
-....+. +..... .....+.+++.+|++.||++|||+.|++++.||......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h~~f~~~~~~ 299 (309)
T cd07845 243 GKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALESSYFKEKPLP 299 (309)
T ss_pred ccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhcChhhccCCCC
Confidence 0000000 000000 012345678899999999999999999999999755443
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing |
| >cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-29 Score=249.50 Aligned_cols=225 Identities=24% Similarity=0.357 Sum_probs=168.7
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|+||.||+|... ++..+|+|.+...... .....+.+.+|++++++++||||+++++++.++...++|+
T Consensus 1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 79 (258)
T cd05578 1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCV-EKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVV 79 (258)
T ss_pred CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhc-chhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEE
Confidence 4677889999999999999875 5788999988643221 1234567999999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 501 EYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
||+++++|.+.+..... ..|.||||+||++++++.+||+|||++....... ....
T Consensus 80 e~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~-~~~~ 158 (258)
T cd05578 80 DLLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDT-LTTS 158 (258)
T ss_pred eCCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeecccccccCCCc-cccc
Confidence 99999999888754411 1133999999999999999999999998654332 2234
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
..|+..|+||| ++.++||||||+++|||++|+.|+...... ........... ..+..+... ...+
T Consensus 159 ~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~~~~-~~~~~~~~~------~~~~ 229 (258)
T cd05578 159 TSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRT--IRDQIRAKQET-ADVLYPATW------STEA 229 (258)
T ss_pred cCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCcc--HHHHHHHHhcc-ccccCcccC------cHHH
Confidence 57889999999 367899999999999999999998643321 01110000000 111112111 1356
Q ss_pred HHHHHhccccCCCCCCCH--HHHHHHHHH
Q 042735 631 MEVAFSCLDVSPESRPTM--QTITQQLLF 657 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~--~ev~~~l~~ 657 (667)
.+++.+||+.+|.+||++ +|++++.||
T Consensus 230 ~~~i~~~l~~~p~~R~~~~~~~l~~~~~~ 258 (258)
T cd05578 230 IDAINKLLERDPQKRLGDNLKDLKNHPYF 258 (258)
T ss_pred HHHHHHHccCChhHcCCccHHHHhcCCCC
Confidence 678889999999999999 888876553
|
Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. |
| >cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-28 Score=241.43 Aligned_cols=224 Identities=26% Similarity=0.411 Sum_probs=169.7
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC--CceEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA--RHSIL 498 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~--~~~~l 498 (667)
+|...+.||+|++|.||+|... ++..+++|++...... ....+.+.+|++++++++||||+++++.+... +..++
T Consensus 1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~l 78 (260)
T cd06606 1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDS--EEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNI 78 (260)
T ss_pred CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccc--hHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEE
Confidence 3667789999999999999875 6888999988654321 23456789999999999999999999999988 88999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC--
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-- 552 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-- 552 (667)
|+||+++++|.+.+.... ...|.|++|+||+++.++.+||+|||.+........
T Consensus 79 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~ 158 (260)
T cd06606 79 FLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGE 158 (260)
T ss_pred EEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEecccccccc
Confidence 999999999988775432 112339999999999999999999999987655432
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhcc-ccCCCCCCCCCchHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDE-MLDPRLPPPSPDVQG 625 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 625 (667)
......++..|+||| ++.++||||||+++|||++|+.||..... .......... ...+.++...
T Consensus 159 ~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~----- 229 (260)
T cd06606 159 GTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGN----PMAALYKIGSSGEPPEIPEHL----- 229 (260)
T ss_pred cccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc----hHHHHHhccccCCCcCCCccc-----
Confidence 133467899999999 35689999999999999999999864331 0000001100 0011111111
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
...+.+++.+|++.+|++||++.|++++.|+
T Consensus 230 -~~~l~~~i~~~l~~~p~~Rp~~~~ll~~~~~ 260 (260)
T cd06606 230 -SEEAKDFLRKCLRRDPKKRPTADELLQHPFL 260 (260)
T ss_pred -CHHHHHHHHHhCcCChhhCCCHHHHhhCCCC
Confidence 2356778889999999999999999998764
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK |
| >cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-28 Score=246.77 Aligned_cols=224 Identities=21% Similarity=0.274 Sum_probs=163.9
Q ss_pred eecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCCCC
Q 042735 429 IGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGS 507 (667)
Q Consensus 429 lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~g~ 507 (667)
||+|+||+||+|.. .+++.+|+|.+...... .....+.+.+|++++++++||||+++++++...+..++||||+++|+
T Consensus 1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~ 79 (277)
T cd05577 1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLK-KRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGD 79 (277)
T ss_pred CCCCCceeEEEEEEcCCCcEEEEEEEehhhhh-hhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCc
Confidence 68999999999975 45788999987643211 11234457889999999999999999999999999999999999999
Q ss_pred hHHHhcccc---C-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcccccccc
Q 042735 508 LATNLSNDA---A-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY 561 (667)
Q Consensus 508 L~~~l~~~~---~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~ 561 (667)
|.+.+.... . ..|.||+|+||+++.++.+||+|||+++..... .......|+.
T Consensus 80 L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~ 158 (277)
T cd05577 80 LKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGG-KKIKGRAGTP 158 (277)
T ss_pred HHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccCcchhhhccC-CccccccCCC
Confidence 988775422 0 113399999999999999999999999865432 2223456888
Q ss_pred cccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHH
Q 042735 562 RYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF 635 (667)
Q Consensus 562 ~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (667)
.|+|||+ +.++|||||||++|||++|+.||................ .. .....+... ...+.+++.
T Consensus 159 ~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~------~~~~~~li~ 230 (277)
T cd05577 159 GYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRT-LE-MAVEYPDKF------SPEAKDLCE 230 (277)
T ss_pred CcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHhcc-cc-ccccCCccC------CHHHHHHHH
Confidence 9999993 568999999999999999999985432211111111100 00 011111111 224567888
Q ss_pred hccccCCCCCC-----CHHHHHHHHHHhhhhh
Q 042735 636 SCLDVSPESRP-----TMQTITQQLLFSLVYF 662 (667)
Q Consensus 636 ~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~ 662 (667)
+||+.+|++|| ++.+++.+.|+....|
T Consensus 231 ~~l~~~p~~R~~~~~~~~~~ll~h~~~~~~~~ 262 (277)
T cd05577 231 ALLQKDPEKRLGCRGGSADEVREHPLFKDLNW 262 (277)
T ss_pred HHccCChhHccCCCcccHHHHHhChhhhcCCh
Confidence 99999999999 8888999998876554
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of |
| >cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=243.41 Aligned_cols=222 Identities=27% Similarity=0.441 Sum_probs=158.8
Q ss_pred CcCcceeecccCeEEEEEEeC----CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC----
Q 042735 423 FDAKYCIGSGRHGSVYRAELP----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR---- 494 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~----~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~---- 494 (667)
|...+.||+|+||.||+|... .+..+|||.+...... ....+++.+|++++++++||||+++++++...+
T Consensus 1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 78 (273)
T cd05074 1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFS--SSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGR 78 (273)
T ss_pred CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCC--hHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCc
Confidence 455678999999999999753 3578999988654322 233567899999999999999999999886542
Q ss_pred --ceEEEEEecCCCChHHHhcccc------------------------------CCcccccccCCeeecCCCceEEeccc
Q 042735 495 --HSILIYEYLKRGSLATNLSNDA------------------------------AAEELDISSKNVLLDLEHKAHVSDFG 542 (667)
Q Consensus 495 --~~~lv~ey~~~g~L~~~l~~~~------------------------------~~~~~dlk~~NiLld~~~~~kl~DFG 542 (667)
..++++||+++|+|.+.+.... ...|.||||+||+++.++.+|++|||
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~dfg 158 (273)
T cd05074 79 LPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFG 158 (273)
T ss_pred ccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECccc
Confidence 3478999999999987653210 01134999999999999999999999
Q ss_pred ccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccC
Q 042735 543 IAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLD 613 (667)
Q Consensus 543 la~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~ 613 (667)
+++....... ......+++.|++|| ++.++|||||||++|||++ |+.|+..... ...... ......
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~----~~~~~~-~~~~~~ 233 (273)
T cd05074 159 LSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVEN----SEIYNY-LIKGNR 233 (273)
T ss_pred ccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCH----HHHHHH-HHcCCc
Confidence 9986543221 112334567899999 3678999999999999999 8888653211 111100 001001
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 614 PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
...+. . ....+.+++.+||+.+|++|||++|+++.|..
T Consensus 234 ~~~~~---~---~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~ 271 (273)
T cd05074 234 LKQPP---D---CLEDVYELMCQCWSPEPKCRPSFQHLRDQLEL 271 (273)
T ss_pred CCCCC---C---CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHh
Confidence 11111 1 12357788899999999999999999998864
|
Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac |
| >cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=240.48 Aligned_cols=222 Identities=24% Similarity=0.401 Sum_probs=168.7
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|++|.||+|... ++..+++|.+...... ......+.+|++++++++|||++++++++.+.+..++||
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~ 78 (254)
T cd06627 1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIK--EEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIIL 78 (254)
T ss_pred CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccC--HHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEE
Confidence 4677889999999999999764 5778999998754322 234567999999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 501 EYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
||+++++|.+.+.... ...|.||||+||+++.++.+||+|||+++...........
T Consensus 79 e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~ 158 (254)
T cd06627 79 EYAENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDAS 158 (254)
T ss_pred ecCCCCcHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEeccccceecCCCcccccc
Confidence 9999999988765321 1123499999999999999999999999876654433344
Q ss_pred ccccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 557 LVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 557 ~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
..|+..|+|||+ +.++||||+|+++|||++|+.|+..... ...... ......+..+... ...+
T Consensus 159 ~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~---~~~~~~--~~~~~~~~~~~~~------~~~~ 227 (254)
T cd06627 159 VVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNP---MAALFR--IVQDDHPPLPEGI------SPEL 227 (254)
T ss_pred cccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccH---HHHHHH--HhccCCCCCCCCC------CHHH
Confidence 678999999994 5689999999999999999999753221 011111 0011111122111 2246
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
.+++.+||..+|++|||+.|++.+.|
T Consensus 228 ~~~i~~~l~~~p~~R~~~~~~l~~~~ 253 (254)
T cd06627 228 KDFLMQCFQKDPNLRPTAKQLLKHPW 253 (254)
T ss_pred HHHHHHHHhCChhhCcCHHHHhcCCC
Confidence 67888999999999999999997654
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast |
| >KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-29 Score=230.30 Aligned_cols=222 Identities=22% Similarity=0.308 Sum_probs=165.5
Q ss_pred cCCcCcceeecccCeEEEEEE-eCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC-----
Q 042735 421 NDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR----- 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~----- 494 (667)
.+|.+.+.+|+|||+-||.++ ..++..+|+|++.... .++.+..++|++.-++++||||++++++...+.
T Consensus 21 ~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~----~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~ 96 (302)
T KOG2345|consen 21 KRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHS----QEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKH 96 (302)
T ss_pred ceEEEeeeecCCCceeeeeecccCcccchhhheeeccc----hHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCce
Confidence 468888999999999999997 5667889999986532 345677899999999999999999999875443
Q ss_pred ceEEEEEecCCCChHHHhcccc------------------------------CCcccccccCCeeecCCCceEEeccccc
Q 042735 495 HSILIYEYLKRGSLATNLSNDA------------------------------AAEELDISSKNVLLDLEHKAHVSDFGIA 544 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~------------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla 544 (667)
..|+++.|...|+|.+.+.... ...|.||||.|||+.+++.+++.|||-+
T Consensus 97 ~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~ 176 (302)
T KOG2345|consen 97 EAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSA 176 (302)
T ss_pred eEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEeccCc
Confidence 4899999999999988664311 1235599999999999999999999998
Q ss_pred ccccCCC---------CCcccccccccccCCC---------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh
Q 042735 545 KFLKPDS---------SNWSALVGTYRYVAPD---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM 606 (667)
Q Consensus 545 ~~~~~~~---------~~~~~~~Gt~~y~aPE---------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~ 606 (667)
....-.- ..+....-|..|.||| .++++|||||||++|+|+.|..||+..... ..+.
T Consensus 177 ~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~--GgSl--- 251 (302)
T KOG2345|consen 177 TQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQ--GGSL--- 251 (302)
T ss_pred cccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhc--CCeE---
Confidence 7543111 0122234578899999 267999999999999999999998732210 0000
Q ss_pred hhccccCCC--CCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 607 RLDEMLDPR--LPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 607 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
.-.+..+. +|...+ ....+.+++..|++.||.+||+..+++.++.
T Consensus 252 -aLAv~n~q~s~P~~~~----yse~l~~lik~mlqvdP~qRP~i~~ll~~~d 298 (302)
T KOG2345|consen 252 -ALAVQNAQISIPNSSR----YSEALHQLIKSMLQVDPNQRPTIPELLSKLD 298 (302)
T ss_pred -EEeeeccccccCCCCC----ccHHHHHHHHHHhcCCcccCCCHHHHHHHHH
Confidence 01111221 222222 2235677888999999999999999998764
|
|
| >cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-28 Score=248.28 Aligned_cols=232 Identities=22% Similarity=0.339 Sum_probs=163.5
Q ss_pred CcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC--CceEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA--RHSILI 499 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~--~~~~lv 499 (667)
|+..+.||+|+||.||+|... ++..+|+|++..... .....+.+.+|++++++++|||++++++++.+. +..++|
T Consensus 1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv 78 (287)
T cd07840 1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENE--KEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMV 78 (287)
T ss_pred CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccc--cccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEE
Confidence 456778999999999999875 478899999875431 122345688999999999999999999999988 889999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC-C
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-N 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~ 553 (667)
|||+++ +|.+.+.... ...|.||||+||++++++.+||+|||++........ .
T Consensus 79 ~e~~~~-~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~ 157 (287)
T cd07840 79 FEYMDH-DLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSAD 157 (287)
T ss_pred eccccc-cHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEccccceeeccCCCccc
Confidence 999985 7877664321 112349999999999999999999999987654321 1
Q ss_pred cccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh----------hhcc-----c
Q 042735 554 WSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM----------RLDE-----M 611 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~----------~~~~-----~ 611 (667)
.+...++..|+||| ++.++|||||||++|||+||+.||............... .... .
T Consensus 158 ~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (287)
T cd07840 158 YTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFEN 237 (287)
T ss_pred ccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhccccccchhhhh
Confidence 23346788999999 356899999999999999999997532211000000000 0000 0
Q ss_pred cCCCCCCCC--CchH-H-HHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 612 LDPRLPPPS--PDVQ-G-KLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 612 ~~~~~~~~~--~~~~-~-~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..+....+. .+.. . ....+.+++.+||..+|++||++.+++++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~~~~ 287 (287)
T cd07840 238 LKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQHEYF 287 (287)
T ss_pred ccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhhCcCC
Confidence 000000000 0000 0 13467789999999999999999999988764
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po |
| >KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-28 Score=262.23 Aligned_cols=218 Identities=20% Similarity=0.294 Sum_probs=164.3
Q ss_pred CCcCcceeecccCeEEEEEEeCCC-ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEE-EEe------
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPSK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGF-CSH------ 492 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~~-~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~-~~~------ 492 (667)
..++.+.|.+|||+.||.|....+ ..+|+|++... +....+...+||++|++|+ |||||.|++. ...
T Consensus 38 ~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~----de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~ 113 (738)
T KOG1989|consen 38 RVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVN----DEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNG 113 (738)
T ss_pred EEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecC----CHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCc
Confidence 456778899999999999987665 89999997643 3345677899999999998 9999999993 321
Q ss_pred CCceEEEEEecCCCChHHHhccc----------------------------cCCcccccccCCeeecCCCceEEeccccc
Q 042735 493 ARHSILIYEYLKRGSLATNLSND----------------------------AAAEELDISSKNVLLDLEHKAHVSDFGIA 544 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~----------------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla 544 (667)
..+.+|.||||+||.|-+++... ....|+|||-+||||+.++..||||||-|
T Consensus 114 ~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLCDFGSa 193 (738)
T KOG1989|consen 114 VWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLCDFGSA 193 (738)
T ss_pred eeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeCccccc
Confidence 24678999999999998876421 12346699999999999999999999988
Q ss_pred ccccCCCCC---cc------cccccccccCCC----C-----CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh
Q 042735 545 KFLKPDSSN---WS------ALVGTYRYVAPD----Y-----RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM 606 (667)
Q Consensus 545 ~~~~~~~~~---~~------~~~Gt~~y~aPE----~-----~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~ 606 (667)
...-..... .. ...-|+-|-||| | ++|+||||+||+||-|+....||+....
T Consensus 194 tt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~---------- 263 (738)
T KOG1989|consen 194 TTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGK---------- 263 (738)
T ss_pred ccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcc----------
Confidence 642211100 00 012478999999 3 6899999999999999999999873211
Q ss_pred hhccccCCC--CCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 607 RLDEMLDPR--LPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 607 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
-.+++.. +|+.. .....+.+++..||+.+|++||+.-||+.+++...
T Consensus 264 --laIlng~Y~~P~~p----~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~ 312 (738)
T KOG1989|consen 264 --LAILNGNYSFPPFP----NYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELA 312 (738)
T ss_pred --eeEEeccccCCCCc----cHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHh
Confidence 1222322 23321 23346778888999999999999999999887653
|
|
| >cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-28 Score=244.12 Aligned_cols=223 Identities=22% Similarity=0.265 Sum_probs=158.3
Q ss_pred ceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHH-HHhcCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 427 YCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEA-LTKIRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~-l~~l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
+.||+|+||.||+|.. .+++.+|||.+....... ......+..|..+ ....+|||++++++++...+..++||||++
T Consensus 2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~ 80 (260)
T cd05611 2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIA-KNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLN 80 (260)
T ss_pred ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhH-HHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccC
Confidence 3589999999999976 457889999876432111 1122344555554 445689999999999999999999999999
Q ss_pred CCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccccccc
Q 042735 505 RGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560 (667)
Q Consensus 505 ~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt 560 (667)
+|+|.+.+..... ..|.||+|+||+++.++.+||+|||+++.... .....|+
T Consensus 81 ~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~----~~~~~~~ 156 (260)
T cd05611 81 GGDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE----NKKFVGT 156 (260)
T ss_pred CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeecccceeccc----cccCCCC
Confidence 9999988754221 11349999999999999999999999986432 2345688
Q ss_pred ccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHH
Q 042735 561 YRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634 (667)
Q Consensus 561 ~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (667)
+.|+||| ++.++|||||||++|||+||+.|+..... .......... ....+.... ......+.+++
T Consensus 157 ~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~----~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~i 228 (260)
T cd05611 157 PDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETP----DAVFDNILSR--RINWPEEVK--EFCSPEAVDLI 228 (260)
T ss_pred cCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCH----HHHHHHHHhc--ccCCCCccc--ccCCHHHHHHH
Confidence 9999999 36789999999999999999999853221 0111100000 111111111 01123567888
Q ss_pred HhccccCCCCCCCH---HHHHHHHHHhhhhh
Q 042735 635 FSCLDVSPESRPTM---QTITQQLLFSLVYF 662 (667)
Q Consensus 635 ~~Cl~~~p~~RPt~---~ev~~~l~~~~~~~ 662 (667)
.+||+.+|++||++ +|++.+.|+....+
T Consensus 229 ~~~l~~~p~~R~~~~~~~~~l~~~~~~~~~~ 259 (260)
T cd05611 229 NRLLCMDPAKRLGANGYQEIKSHPFFKSINW 259 (260)
T ss_pred HHHccCCHHHccCCCcHHHHHcChHhhcCCC
Confidence 89999999999954 79998988866543
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do |
| >cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-28 Score=256.13 Aligned_cols=238 Identities=23% Similarity=0.317 Sum_probs=165.9
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeC--Cc
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHA--RH 495 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~--~~ 495 (667)
.++|+..+.||+|+||.||+|... ++..+|||++...... ......+.+|+.+++++ +||||++++|++... ..
T Consensus 6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~--~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~ 83 (337)
T cd07852 6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRN--ATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKD 83 (337)
T ss_pred hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCc--chhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCce
Confidence 467888889999999999999865 5788999987543221 12234677899999999 999999999998654 36
Q ss_pred eEEEEEecCCCChHHHhcccc-----------------------CCcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA-----------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~-----------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
.++||||++ ++|...+.... ...|.||||+||+++.++.+||+|||+++.......
T Consensus 84 ~~lv~e~~~-~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~ 162 (337)
T cd07852 84 IYLVFEYME-TDLHAVIRANILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEE 162 (337)
T ss_pred EEEEecccc-cCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccchhccccccc
Confidence 899999998 58877664321 112349999999999999999999999986643321
Q ss_pred -----CcccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCC-----------Chhhhh----
Q 042735 553 -----NWSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILP-----------SPSVIN---- 605 (667)
Q Consensus 553 -----~~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~-----------~~~~~~---- 605 (667)
......||+.|+|||+ +.++|||||||++|||+||+.||........ ......
T Consensus 163 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (337)
T cd07852 163 NPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKS 242 (337)
T ss_pred cccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHh
Confidence 2234578999999993 4579999999999999999999753211100 000000
Q ss_pred hhhccccC----CCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 606 MRLDEMLD----PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 606 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.....+++ ................+.+++.+||+.+|++|||+.+++++.|+...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~~~~~~~ 301 (337)
T cd07852 243 PFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEHPYVAQF 301 (337)
T ss_pred hhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhChhhhhh
Confidence 00000000 00000000000112356788899999999999999999999877543
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul |
| >cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-28 Score=254.42 Aligned_cols=233 Identities=20% Similarity=0.278 Sum_probs=161.2
Q ss_pred CcCcceeecccCeEEEEEEeC---CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC--CceE
Q 042735 423 FDAKYCIGSGRHGSVYRAELP---SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA--RHSI 497 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~---~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~--~~~~ 497 (667)
|+..+.||+|+||.||+|... .+..+|+|.+...... .....+.+.+|++++++++||||+++++++.+. +..+
T Consensus 2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 80 (316)
T cd07842 2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQ-YTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY 80 (316)
T ss_pred ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEecccccc-ccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence 667788999999999999864 4788999988753211 111234578899999999999999999999988 7899
Q ss_pred EEEEecCCCChHHHhcccc-----------------------------CCcccccccCCeeecC----CCceEEeccccc
Q 042735 498 LIYEYLKRGSLATNLSNDA-----------------------------AAEELDISSKNVLLDL----EHKAHVSDFGIA 544 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~-----------------------------~~~~~dlk~~NiLld~----~~~~kl~DFGla 544 (667)
+||||+++ ++.+.+.... ...|.||||+||+++. ++.+||+|||++
T Consensus 81 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~ 159 (316)
T cd07842 81 LLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLA 159 (316)
T ss_pred EEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccc
Confidence 99999985 5554432110 0113499999999999 999999999999
Q ss_pred ccccCCCC---CcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC----Chhhhhhhhcc
Q 042735 545 KFLKPDSS---NWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP----SPSVINMRLDE 610 (667)
Q Consensus 545 ~~~~~~~~---~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~----~~~~~~~~~~~ 610 (667)
+....... ......||+.|+||| ++.++|||||||++|||++|+.||........ ........+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (316)
T cd07842 160 RLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFE 239 (316)
T ss_pred cccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHH
Confidence 86543221 123457889999999 35679999999999999999999863322110 00000000000
Q ss_pred ccC-----------------------CCCCCCCCchH-------HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 611 MLD-----------------------PRLPPPSPDVQ-------GKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 611 ~~~-----------------------~~~~~~~~~~~-------~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.+. .....+..... .....+.+++.+|++.+|++|||++|++++.||
T Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~~~~f 316 (316)
T cd07842 240 VLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALEHPYF 316 (316)
T ss_pred HhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhcCCCC
Confidence 000 00000000000 112357789999999999999999999988765
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the |
| >PHA03210 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-28 Score=267.94 Aligned_cols=237 Identities=19% Similarity=0.240 Sum_probs=156.0
Q ss_pred HcCCcCcceeecccCeEEEEEEeCC--CceEEEEec--------------CCCCCCchHHhHHHHHHHHHHHHhcCCCCe
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPS--KEFLAVKKF--------------NSPLPSDQIADQKEFFAEIEALTKIRHRNI 483 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~--~~~~avk~~--------------~~~~~~~~~~~~~~~~~E~~~l~~l~H~ni 483 (667)
.++|+..+.||+|+||.||++..+. +...++|.+ .+.. .........+.+|+.++++++||||
T Consensus 147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-~~~~~~~~~~~~Ei~il~~l~HpnI 225 (501)
T PHA03210 147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRV-KAGSRAAIQLENEILALGRLNHENI 225 (501)
T ss_pred hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHh-hcchHHHHHHHHHHHHHHhCCCCCc
Confidence 5789999999999999999986532 222222211 0000 0111234568899999999999999
Q ss_pred eEEEEEEEeCCceEEEEEecCCCChHHHhccc-----------------------------cCCcccccccCCeeecCCC
Q 042735 484 VKFYGFCSHARHSILIYEYLKRGSLATNLSND-----------------------------AAAEELDISSKNVLLDLEH 534 (667)
Q Consensus 484 v~~~g~~~~~~~~~lv~ey~~~g~L~~~l~~~-----------------------------~~~~~~dlk~~NiLld~~~ 534 (667)
|++++++...+..|+|+||+.+ ++...+... ....|.||||+|||++.++
T Consensus 226 v~l~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NILl~~~~ 304 (501)
T PHA03210 226 LKIEEILRSEANTYMITQKYDF-DLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDG 304 (501)
T ss_pred CcEeEEEEECCeeEEEEecccc-CHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCC
Confidence 9999999999999999999864 555443211 1122459999999999999
Q ss_pred ceEEecccccccccCCCC-CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCC-CCCCccCCCChhhhhh
Q 042735 535 KAHVSDFGIAKFLKPDSS-NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP-RGFVSSILPSPSVINM 606 (667)
Q Consensus 535 ~~kl~DFGla~~~~~~~~-~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p-~~~~~~~~~~~~~~~~ 606 (667)
.+||+|||+++....... ......||+.|+||| |+.++|||||||++|||++|+.+ +..... .+.......
T Consensus 305 ~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~-~~~~~~~~~ 383 (501)
T PHA03210 305 KIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGG-KPGKQLLKI 383 (501)
T ss_pred CEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCC-CHHHHHHHH
Confidence 999999999987654322 223467999999999 56789999999999999998754 321110 000000000
Q ss_pred h-hccccCCCCCC----------------CCCchH------HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 607 R-LDEMLDPRLPP----------------PSPDVQ------GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 607 ~-~~~~~~~~~~~----------------~~~~~~------~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
. ........++. ...... .....+.+++.+|++.||.+|||+.|++.+.||..
T Consensus 384 ~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~hp~f~~ 459 (501)
T PHA03210 384 IDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLALPLFSA 459 (501)
T ss_pred HHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhhChhhhc
Confidence 0 00000000000 000000 00123456678999999999999999999999864
|
|
| >cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-28 Score=257.61 Aligned_cols=236 Identities=19% Similarity=0.267 Sum_probs=165.3
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC----
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR---- 494 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~---- 494 (667)
.++|...+.||+|+||.||+|.. .++..||+|++.... .......+.+|+.++++++||||+++++++....
T Consensus 4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 80 (336)
T cd07849 4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFE---HQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESF 80 (336)
T ss_pred ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccc---cchhHHHHHHHHHHHHhCCCCCcCchhheeeccccccc
Confidence 36788999999999999999975 568889999875321 1223456889999999999999999999876543
Q ss_pred -ceEEEEEecCCCChHHHhcccc-----------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 495 -HSILIYEYLKRGSLATNLSNDA-----------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 495 -~~~lv~ey~~~g~L~~~l~~~~-----------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
..++|+||+++ ++.+.+.... ...|.||||+||+++.++.+||+|||+++.....
T Consensus 81 ~~~~lv~e~~~~-~l~~~~~~~~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~ 159 (336)
T cd07849 81 NDVYIVQELMET-DLYKLIKTQHLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPE 159 (336)
T ss_pred ceEEEEehhccc-CHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECcccceeecccc
Confidence 57999999985 7766554321 1224499999999999999999999999865432
Q ss_pred CC---CcccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCC---------CChhhhhhhhccc
Q 042735 551 SS---NWSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSIL---------PSPSVINMRLDEM 611 (667)
Q Consensus 551 ~~---~~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~---------~~~~~~~~~~~~~ 611 (667)
.. ......||+.|+|||. +.++|||||||++|||+||+.||....... ..+.... ...+
T Consensus 160 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 237 (336)
T cd07849 160 HDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQED--LNCI 237 (336)
T ss_pred ccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHH--HHHh
Confidence 21 1233578999999993 457999999999999999999985321100 0000000 0000
Q ss_pred cCC-------CCCCCCC-c----hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 612 LDP-------RLPPPSP-D----VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 612 ~~~-------~~~~~~~-~----~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.+. ..+.... . .......+.+++.+||+.+|++|||+.|++++.|+....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~ 299 (336)
T cd07849 238 ISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQYH 299 (336)
T ss_pred hchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccccC
Confidence 000 0000000 0 001123567899999999999999999999999886543
|
Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase |
| >cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-28 Score=251.48 Aligned_cols=234 Identities=18% Similarity=0.273 Sum_probs=162.2
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCc---
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARH--- 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~--- 495 (667)
++|+..+.||+|+||.||+|... ++..||+|+....... ......+.+|++++++++ ||||+++++++...+.
T Consensus 1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~--~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~ 78 (295)
T cd07837 1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDE--EGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGK 78 (295)
T ss_pred CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccc--cCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCC
Confidence 36788899999999999999864 5788999987543221 112346888999999996 6999999999987665
Q ss_pred --eEEEEEecCCCChHHHhccccC-----------------------------CcccccccCCeeecC-CCceEEecccc
Q 042735 496 --SILIYEYLKRGSLATNLSNDAA-----------------------------AEELDISSKNVLLDL-EHKAHVSDFGI 543 (667)
Q Consensus 496 --~~lv~ey~~~g~L~~~l~~~~~-----------------------------~~~~dlk~~NiLld~-~~~~kl~DFGl 543 (667)
.|+||||+++ ++.+.+..... ..|.||||+||+++. ++.+||+|||+
T Consensus 79 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~ 157 (295)
T cd07837 79 PSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGL 157 (295)
T ss_pred ceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEeeccc
Confidence 8999999995 78776542110 113399999999998 89999999999
Q ss_pred cccccCCCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh----------
Q 042735 544 AKFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM---------- 606 (667)
Q Consensus 544 a~~~~~~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~---------- 606 (667)
++.........+...+++.|+||| ++.++|||||||++|||+||+.||...............
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (295)
T cd07837 158 GRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWP 237 (295)
T ss_pred ceecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCCChhhCc
Confidence 986543322233446788999999 256899999999999999999997532211000000000
Q ss_pred hhcccc----CCCCCCCCC-c-hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 607 RLDEML----DPRLPPPSP-D-VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 607 ~~~~~~----~~~~~~~~~-~-~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
...... .+...+... . .......+.+++.+||+.+|++||++.|++.+.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~~~~~ 294 (295)
T cd07837 238 GVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALTHPYF 294 (295)
T ss_pred chhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhcCCCc
Confidence 000000 000000000 0 00112356788999999999999999999998775
|
Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm |
| >cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=240.48 Aligned_cols=223 Identities=24% Similarity=0.390 Sum_probs=169.5
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|+||.||+|... ++..+++|++..... .....+.+.+|++++++++|||++++++.+...+..++|+
T Consensus 1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~ 78 (258)
T cd08215 1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNM--SEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVM 78 (258)
T ss_pred CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccC--ChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEE
Confidence 4677789999999999999864 578899998865322 1234567889999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc----------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 501 EYLKRGSLATNLSNDA----------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~----------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
||+++++|.+.+.... ...|.|++|+||+++.++.+||+|||++........
T Consensus 79 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~ 158 (258)
T cd08215 79 EYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVD 158 (258)
T ss_pred EecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccceeecccCcc
Confidence 9999999988775421 011339999999999999999999999987654432
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
......|++.|+||| ++.++||||+|+++|||++|+.|+.... ............ .+.++. . .
T Consensus 159 ~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~----~~~~~~~~~~~~-~~~~~~---~---~ 227 (258)
T cd08215 159 LAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGEN----LLELALKILKGQ-YPPIPS---Q---Y 227 (258)
T ss_pred eecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCc----HHHHHHHHhcCC-CCCCCC---C---C
Confidence 334457899999999 3678999999999999999999975332 111111111111 111121 1 1
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
...+.+++.+||..+|++|||+.|++++.|+
T Consensus 228 ~~~~~~~i~~~l~~~p~~Rp~~~~ll~~~~~ 258 (258)
T cd08215 228 SSELRNLVSSLLQKDPEERPSIAQILQSPFI 258 (258)
T ss_pred CHHHHHHHHHHcCCChhhCcCHHHHhcCCCC
Confidence 1246678889999999999999999987653
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They |
| >KOG0584 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-29 Score=257.09 Aligned_cols=223 Identities=19% Similarity=0.347 Sum_probs=162.1
Q ss_pred cceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc--eEEEEEe
Q 042735 426 KYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH--SILIYEY 502 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~--~~lv~ey 502 (667)
..+||+|+|=+||+|... .|..||=-.++........+..+.|..|+.+|+.|.|||||++|.++.+... ..+|.|.
T Consensus 45 ~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL 124 (632)
T KOG0584|consen 45 DEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITEL 124 (632)
T ss_pred hhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeec
Confidence 356999999999999653 3544432111111111223445789999999999999999999999988655 7799999
Q ss_pred cCCCChHHHhccc--------------------------cCCcccccccCCeeec-CCCceEEecccccccccCCCCCcc
Q 042735 503 LKRGSLATNLSND--------------------------AAAEELDISSKNVLLD-LEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 503 ~~~g~L~~~l~~~--------------------------~~~~~~dlk~~NiLld-~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
+..|+|+.++.+. ....|.|||.+||+|. ..|.|||+|.|+|+..... .+.
T Consensus 125 ~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s--~ak 202 (632)
T KOG0584|consen 125 FTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKS--HAK 202 (632)
T ss_pred ccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHhhcc--ccc
Confidence 9999998776432 1234569999999997 6699999999999987543 344
Q ss_pred cccccccccCCC-----CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 556 ALVGTYRYVAPD-----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 556 ~~~Gt~~y~aPE-----~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
.+.|||.+|||| |++.+||||||+.|+||+|+.-||..- ..+..+..++...+-|.--.... -.++
T Consensus 203 svIGTPEFMAPEmYEE~YnE~VDVYaFGMCmLEMvT~eYPYsEC----~n~AQIYKKV~SGiKP~sl~kV~-----dPev 273 (632)
T KOG0584|consen 203 SVIGTPEFMAPEMYEENYNELVDVYAFGMCMLEMVTSEYPYSEC----TNPAQIYKKVTSGIKPAALSKVK-----DPEV 273 (632)
T ss_pred eeccCccccChHHHhhhcchhhhhhhhhHHHHHHHhccCChhhh----CCHHHHHHHHHcCCCHHHhhccC-----CHHH
Confidence 579999999998 899999999999999999999998622 12222222221111111100011 1246
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.+|+.+|+.. .++|||+.|++.+.||...
T Consensus 274 r~fIekCl~~-~~~R~sa~eLL~d~Ff~~d 302 (632)
T KOG0584|consen 274 REFIEKCLAT-KSERLSAKELLKDPFFDED 302 (632)
T ss_pred HHHHHHHhcC-chhccCHHHHhhChhhccc
Confidence 7888899999 8999999999999988653
|
|
| >KOG0586 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-28 Score=252.28 Aligned_cols=224 Identities=21% Similarity=0.318 Sum_probs=173.2
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
+..|.....||+|.|+.|..|+. .++..||+|.+.+... +. ...+.+.+|+++|..++|||||+++.+......+|+
T Consensus 55 vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~l-n~-~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lyl 132 (596)
T KOG0586|consen 55 VGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQL-NP-SKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYL 132 (596)
T ss_pred ccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhccc-Ch-HHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEE
Confidence 45678888999999999999976 4578899998876433 22 233458999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||+.+|++++++..+.. ..|.|||++|||||.++++||+|||++..+... ...
T Consensus 133 V~eya~~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~-~~l 211 (596)
T KOG0586|consen 133 VMEYASGGELFDYLVKHGRMKEKEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDENMNIKIADFGFSTFFDYG-LML 211 (596)
T ss_pred EEEeccCchhHHHHHhcccchhhhhhhhhHHHHHHHHHHhhcceeccccchhhcccccccceeeeccccceeeccc-ccc
Confidence 9999999999998865421 123499999999999999999999999987743 345
Q ss_pred ccccccccccCCC------C-CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 555 SALVGTYRYVAPD------Y-RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~-~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
.+.||++.|.||| | ..++|+||+||++|-|+.|..||+...-....+.+ +... -+++..-..
T Consensus 212 qt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~Lr~rv----l~gk--~rIp~~ms~----- 280 (596)
T KOG0586|consen 212 QTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKELRPRV----LRGK--YRIPFYMSC----- 280 (596)
T ss_pred cccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccccccchh----eeee--ecccceeec-----
Confidence 6789999999999 2 46899999999999999999999743211111111 1111 112222111
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
+.-+++.+.+..+|.+|+++++|.++-|..
T Consensus 281 -dce~lLrk~lvl~Pskr~~~dqim~~~W~n 310 (596)
T KOG0586|consen 281 -DCEDLLRKFLVLNPSKRGPCDQIMKDRWRN 310 (596)
T ss_pred -hhHHHHHHhhccCccccCCHHHhhhhcccc
Confidence 233566678999999999999999886653
|
|
| >cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-28 Score=254.79 Aligned_cols=237 Identities=21% Similarity=0.280 Sum_probs=166.0
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC-----C
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA-----R 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~-----~ 494 (667)
.+|...+.||+|+||.||+|.. .++..||||++...... ......+.+|+.++++++||||+++++++... .
T Consensus 5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 82 (337)
T cd07858 5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDN--RIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFN 82 (337)
T ss_pred cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccc--cchhHHHHHHHHHHHhcCCCCccchHHheecccccccC
Confidence 4678888999999999999975 56889999987653221 12234677899999999999999999988654 3
Q ss_pred ceEEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 495 HSILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
..++||||+. ++|.+.+.... ...|.||||+||+++.++.+||+|||+++.....
T Consensus 83 ~~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~ 161 (337)
T cd07858 83 DVYIVYELMD-TDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEK 161 (337)
T ss_pred cEEEEEeCCC-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcCccccccCCC
Confidence 4799999997 67776654321 1123499999999999999999999999876543
Q ss_pred CCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC-----------CChhhh----hhhh
Q 042735 551 SSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL-----------PSPSVI----NMRL 608 (667)
Q Consensus 551 ~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~-----------~~~~~~----~~~~ 608 (667)
........||..|+||| ++.++|||||||++|||++|+.||....... +..... ....
T Consensus 162 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (337)
T cd07858 162 GDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKA 241 (337)
T ss_pred cccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhh
Confidence 23334457889999999 3468999999999999999999985322100 000000 0000
Q ss_pred ccccC--CCCCCCC--CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 609 DEMLD--PRLPPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 609 ~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
...+. +..+... .........+.+++.+||+.+|++|||++|++++.|+...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~ 297 (337)
T cd07858 242 RRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASL 297 (337)
T ss_pred hHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhh
Confidence 00000 0000000 0000122356789999999999999999999999998653
|
Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati |
| >cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=242.82 Aligned_cols=223 Identities=20% Similarity=0.251 Sum_probs=159.6
Q ss_pred eeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHH---HHHHhcCCCCeeEEEEEEEeCCceEEEEEec
Q 042735 428 CIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEI---EALTKIRHRNIVKFYGFCSHARHSILIYEYL 503 (667)
Q Consensus 428 ~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~---~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~ 503 (667)
.||+|+||.||+|.. .+++.+|+|.+........ .....+..|. +.++...||||+++++++.+.+..++||||+
T Consensus 1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~ 79 (278)
T cd05606 1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMK-QGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLM 79 (278)
T ss_pred CcccCCCeEEEEEEEecCCCEEEEEEeeccccccc-hhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecC
Confidence 479999999999976 4578999998765322111 1112233443 3455568999999999999999999999999
Q ss_pred CCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcccccc
Q 042735 504 KRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559 (667)
Q Consensus 504 ~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~G 559 (667)
++|+|.+++..... ..|.|+||+||+++.++.+||+|||+++..... ......|
T Consensus 80 ~g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~--~~~~~~~ 157 (278)
T cd05606 80 NGGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK--KPHASVG 157 (278)
T ss_pred CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcCccccCcc--CCcCcCC
Confidence 99999887743321 123499999999999999999999999755322 2234579
Q ss_pred cccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHH
Q 042735 560 TYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632 (667)
Q Consensus 560 t~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (667)
|..|+||| ++.++||||+||++|||++|+.||....... ...... .....++.++... ...+.+
T Consensus 158 ~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~--~~~~~~-~~~~~~~~~~~~~------s~~~~~ 228 (278)
T cd05606 158 THGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD--KHEIDR-MTLTMAVELPDSF------SPELRS 228 (278)
T ss_pred CcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccc--hHHHHH-HhhccCCCCCCcC------CHHHHH
Confidence 99999999 3567899999999999999999986432111 001110 0111122222211 224667
Q ss_pred HHHhccccCCCCCC-----CHHHHHHHHHHhhhhh
Q 042735 633 VAFSCLDVSPESRP-----TMQTITQQLLFSLVYF 662 (667)
Q Consensus 633 ~~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~ 662 (667)
++.+|+..+|++|| ++++++++.|+....|
T Consensus 229 li~~~l~~~p~~R~~~~~~~~~~ll~~~~~~~~~~ 263 (278)
T cd05606 229 LLEGLLQRDVNRRLGCLGRGAQEVKEHPFFRSLDW 263 (278)
T ss_pred HHHHHhhcCHHhccCCCCCCHHHHHhCccccCCCc
Confidence 88899999999999 9999999999876554
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co |
| >cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=252.88 Aligned_cols=239 Identities=21% Similarity=0.336 Sum_probs=167.2
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC-----
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA----- 493 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~----- 493 (667)
.++|+..+.||+|+||.||+|.. .++..+|+|++...... ....+.+.+|+.++++++||||+++++++...
T Consensus 15 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 92 (353)
T cd07850 15 LKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQN--VTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEE 92 (353)
T ss_pred hcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccC--hhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccc
Confidence 46788899999999999999975 46889999987643221 22345678899999999999999999988643
Q ss_pred -CceEEEEEecCCCChHHHhccc----------------------cCCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 494 -RHSILIYEYLKRGSLATNLSND----------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 494 -~~~~lv~ey~~~g~L~~~l~~~----------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
...++||||+.+ +|.+.+... ....|.||||+||+++.++.+||+|||+++.....
T Consensus 93 ~~~~~lv~e~~~~-~l~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~ 171 (353)
T cd07850 93 FQDVYLVMELMDA-NLCQVIQMDLDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS 171 (353)
T ss_pred cCcEEEEEeccCC-CHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCccceeCCCC
Confidence 357999999974 676654321 11224599999999999999999999999865432
Q ss_pred CCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC-----------CChhhhh---hhhcc
Q 042735 551 SSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL-----------PSPSVIN---MRLDE 610 (667)
Q Consensus 551 ~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~-----------~~~~~~~---~~~~~ 610 (667)
. ......||+.|+||| ++.++|||||||++|||++|+.||....... +...... .....
T Consensus 172 ~-~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (353)
T cd07850 172 F-MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRN 250 (353)
T ss_pred C-CCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhH
Confidence 2 223456899999999 5778999999999999999999975322100 0000000 00000
Q ss_pred ccC---------------CC-CCCCCCc-hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 611 MLD---------------PR-LPPPSPD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 611 ~~~---------------~~-~~~~~~~-~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
..+ .. .+..... .......+.+++.+||+.||++|||+.|++++.|+...++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~~~~~~~~~ 319 (353)
T cd07850 251 YVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQHPYINVWYD 319 (353)
T ss_pred HhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcChhHhhccC
Confidence 000 00 0000000 0012234678899999999999999999999998875443
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK |
| >KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=266.91 Aligned_cols=221 Identities=26% Similarity=0.434 Sum_probs=164.9
Q ss_pred cCcceeecccCeEEEEEEeC----C----CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCC
Q 042735 424 DAKYCIGSGRHGSVYRAELP----S----KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHAR 494 (667)
Q Consensus 424 ~~~~~lg~g~~g~vy~~~~~----~----~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~ 494 (667)
...+.+|+|.||.|++|... . ...||||.++..... .+.+.+..|+++|..+. |||||.++|+|...+
T Consensus 299 ~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~---~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~ 375 (609)
T KOG0200|consen 299 KLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASS---SEKKDLMSELNVLKELGKHPNIVNLLGACTQDG 375 (609)
T ss_pred cccceeecccccceEeEEEeecccccccceEEEEEEecccccCc---HHHHHHHHHHHHHHHhcCCcchhhheeeeccCC
Confidence 34458999999999999642 1 346999998765432 45678999999999986 999999999999999
Q ss_pred ceEEEEEecCCCChHHHhcccc-----------------CC-----------------------cccccccCCeeecCCC
Q 042735 495 HSILIYEYLKRGSLATNLSNDA-----------------AA-----------------------EELDISSKNVLLDLEH 534 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~-----------------~~-----------------------~~~dlk~~NiLld~~~ 534 (667)
..++|+||+..|+|.++|...+ .. .|.|+.++|||+.++.
T Consensus 376 ~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNVLi~~~~ 455 (609)
T KOG0200|consen 376 PLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARNVLITKNK 455 (609)
T ss_pred ceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhEEecCCC
Confidence 9999999999999999887655 10 1239999999999999
Q ss_pred ceEEecccccccccCCCCCc-cccccc--ccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhh
Q 042735 535 KAHVSDFGIAKFLKPDSSNW-SALVGT--YRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVI 604 (667)
Q Consensus 535 ~~kl~DFGla~~~~~~~~~~-~~~~Gt--~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~ 604 (667)
.+||+|||+||......... ....|| ..||||| |+.|+|||||||+|||+.| |..|+.... ......
T Consensus 456 ~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~---~~~~l~ 532 (609)
T KOG0200|consen 456 VIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIP---PTEELL 532 (609)
T ss_pred EEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCC---cHHHHH
Confidence 99999999999654433222 222333 3599999 7899999999999999999 778875311 111111
Q ss_pred hhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 605 NMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
. .+........|..+ ..++.++|..||+.+|++||++.|+.+.+..
T Consensus 533 ~-~l~~G~r~~~P~~c------~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~ 578 (609)
T KOG0200|consen 533 E-FLKEGNRMEQPEHC------SDEIYDLMKSCWNADPEDRPTFSECVEFFEK 578 (609)
T ss_pred H-HHhcCCCCCCCCCC------CHHHHHHHHHHhCCCcccCCCHHHHHHHHHH
Confidence 1 12221111122221 2357789999999999999999999987766
|
|
| >cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-28 Score=248.88 Aligned_cols=236 Identities=21% Similarity=0.291 Sum_probs=161.1
Q ss_pred HHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc--
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH-- 495 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~-- 495 (667)
..++|+....||+|+||.||+|... ++..+|||++....... .....+.+|++++++++||||+++++++.....
T Consensus 10 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~ 87 (310)
T cd07865 10 EVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKE--GFPITALREIKILQLLKHENVVNLIEICRTKATPY 87 (310)
T ss_pred hhhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcC--CchhHHHHHHHHHHhCCCCCccceEEEEecccccc
Confidence 3467889999999999999999864 57889999875432211 122346789999999999999999999876543
Q ss_pred ------eEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEeccccc
Q 042735 496 ------SILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIA 544 (667)
Q Consensus 496 ------~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla 544 (667)
.++||||+.+ ++.+.+.... ...|.||||+||+++.++.+||+|||++
T Consensus 88 ~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~ 166 (310)
T cd07865 88 NRYKGSFYLVFEFCEH-DLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLA 166 (310)
T ss_pred cCCCceEEEEEcCCCc-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcEEECcCCCc
Confidence 4999999975 6766554321 1123499999999999999999999999
Q ss_pred ccccCCCC----CcccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCC-----------hh
Q 042735 545 KFLKPDSS----NWSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPS-----------PS 602 (667)
Q Consensus 545 ~~~~~~~~----~~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~-----------~~ 602 (667)
........ ......|+..|+|||+ +.++|||||||++|||+||+.|+......... +.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (310)
T cd07865 167 RAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPE 246 (310)
T ss_pred ccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChh
Confidence 86543221 1233467889999993 46899999999999999999987532210000 00
Q ss_pred hhhhh-hccccC-CCCCCCCC-chH------HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 603 VINMR-LDEMLD-PRLPPPSP-DVQ------GKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 603 ~~~~~-~~~~~~-~~~~~~~~-~~~------~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..... .....+ ...+.... ... .....+.+++.+||..+|++|||++|++++.||
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~h~~f 310 (310)
T cd07865 247 VWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALNHDFF 310 (310)
T ss_pred hcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhcCCCC
Confidence 00000 000000 00000000 000 011245688999999999999999999998765
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl |
| >cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-28 Score=246.24 Aligned_cols=230 Identities=23% Similarity=0.345 Sum_probs=163.4
Q ss_pred CcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~lv~ 500 (667)
|...+.||+|++|.||+|... +++.+++|++...... .......+|++.+++++ ||||+++++++.+++..++||
T Consensus 1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~---~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~ 77 (283)
T cd07830 1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYS---WEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVF 77 (283)
T ss_pred CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccc---hhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEE
Confidence 456778999999999999875 4678999987654321 12234567999999999 999999999999999999999
Q ss_pred EecCCCChHHHhcccc--C------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 501 EYLKRGSLATNLSNDA--A------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~--~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||+ +|+|.+.+.... . ..|.||||+||+++.++.+||+|||+++....... .
T Consensus 78 e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~-~ 155 (283)
T cd07830 78 EYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPP-Y 155 (283)
T ss_pred ecC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeecccceeccCCCC-c
Confidence 999 889987775432 1 11339999999999999999999999986643322 2
Q ss_pred ccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhh-------------hhhhhccccCC
Q 042735 555 SALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV-------------INMRLDEMLDP 614 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~-------------~~~~~~~~~~~ 614 (667)
+...|+..|+|||+ +.++||||||+++|||+||+.||............ .........+.
T Consensus 156 ~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (283)
T cd07830 156 TDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGF 235 (283)
T ss_pred CCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhccccc
Confidence 34568899999993 56899999999999999999887532211000000 00000001111
Q ss_pred CCCCCCCchH-----HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 615 RLPPPSPDVQ-----GKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 615 ~~~~~~~~~~-----~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..+...+... .....+.+++.+||+.+|++|||+.|++.+.|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~~~~ 283 (283)
T cd07830 236 RFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQHPYF 283 (283)
T ss_pred cccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhhCCCC
Confidence 1111110000 012357789999999999999999999988664
|
Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili |
| >cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-28 Score=254.48 Aligned_cols=242 Identities=20% Similarity=0.328 Sum_probs=166.8
Q ss_pred HHHHHHHH----cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEE
Q 042735 413 YVEIIRAI----NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487 (667)
Q Consensus 413 ~~~~~~~~----~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~ 487 (667)
.+|+.+++ ++|.....||+|+||.||+|.. .++..+|||++....... .....+.+|++++++++||||++++
T Consensus 3 ~~~~~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~~~ 80 (342)
T cd07879 3 REEVNKTVWELPERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSE--IFAKRAYRELTLLKHMQHENVIGLL 80 (342)
T ss_pred hhhhhhhhhccccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccc--cchhHHHHHHHHHHhcCCCCccchh
Confidence 34555444 7888889999999999999985 468899999886543221 2234688999999999999999999
Q ss_pred EEEEeCC------ceEEEEEecCCCChHHHhccc----------------------cCCcccccccCCeeecCCCceEEe
Q 042735 488 GFCSHAR------HSILIYEYLKRGSLATNLSND----------------------AAAEELDISSKNVLLDLEHKAHVS 539 (667)
Q Consensus 488 g~~~~~~------~~~lv~ey~~~g~L~~~l~~~----------------------~~~~~~dlk~~NiLld~~~~~kl~ 539 (667)
+++.... ..++|+||+.. ++....... ....|.||||+||+++.++.+||+
T Consensus 81 ~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~~~kL~ 159 (342)
T cd07879 81 DVFTSAVSGDEFQDFYLVMPYMQT-DLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKIL 159 (342)
T ss_pred heecccccCCCCceEEEEeccccc-CHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEe
Confidence 9987543 45899999974 665543211 112345999999999999999999
Q ss_pred cccccccccCCCCCcccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCC-----------CCh
Q 042735 540 DFGIAKFLKPDSSNWSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSIL-----------PSP 601 (667)
Q Consensus 540 DFGla~~~~~~~~~~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~-----------~~~ 601 (667)
|||+++..... .....||+.|+|||. +.++|||||||++|||++|+.||....... +.+
T Consensus 160 dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 236 (342)
T cd07879 160 DFGLARHADAE---MTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGP 236 (342)
T ss_pred eCCCCcCCCCC---CCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCH
Confidence 99999865322 234568899999993 457999999999999999999986322100 000
Q ss_pred hhhhhh----hccccC--CCCCCCC-Cc-hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 602 SVINMR----LDEMLD--PRLPPPS-PD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 602 ~~~~~~----~~~~~~--~~~~~~~-~~-~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
...... ...... +..+... .. .......+.+++.+||+.+|++||+++|++.+.||...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~ 303 (342)
T cd07879 237 EFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSF 303 (342)
T ss_pred HHHHHhcccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhc
Confidence 000000 000000 0000000 00 00112246688899999999999999999999888654
|
Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13 |
| >cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-28 Score=251.05 Aligned_cols=230 Identities=17% Similarity=0.179 Sum_probs=158.2
Q ss_pred eecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCCCCh
Q 042735 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL 508 (667)
Q Consensus 429 lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~g~L 508 (667)
+|.|+++.||++.. ++..+|||++..... .....+.+.+|++++++++||||+++++++.+.+..+++|||+++|+|
T Consensus 10 ~~~~~~v~~~~~~~-~~~~~avK~~~~~~~--~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l 86 (314)
T cd08216 10 FEDLMIVHLAKHKP-TNTLVAVKKINLDSC--SKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSC 86 (314)
T ss_pred hcCCceEEEEEecC-CCCEEEEEEEecccc--chhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCH
Confidence 34444444444444 688899999865322 223456799999999999999999999999999999999999999999
Q ss_pred HHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC-------Ccc
Q 042735 509 ATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-------NWS 555 (667)
Q Consensus 509 ~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-------~~~ 555 (667)
.+.+.... ...|.||||+||+++.++.+|++|||.+........ ...
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~ 166 (314)
T cd08216 87 EDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPK 166 (314)
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCccceeeccccccccccccccc
Confidence 88775321 011339999999999999999999999875532211 123
Q ss_pred cccccccccCCC--------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhcc-----------------
Q 042735 556 ALVGTYRYVAPD--------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDE----------------- 610 (667)
Q Consensus 556 ~~~Gt~~y~aPE--------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~----------------- 610 (667)
...++..|+||| |+.++|||||||++|||++|+.||...................
T Consensus 167 ~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (314)
T cd08216 167 SSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQS 246 (314)
T ss_pred cccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhhhcCCcCcc
Confidence 346788999999 3568999999999999999999986322110000000000000
Q ss_pred ---ccCCCCC--CCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 611 ---MLDPRLP--PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 611 ---~~~~~~~--~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
..++... ............+.+++.+||..+|++|||++|++++.++....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~p~~~~~~ 302 (314)
T cd08216 247 RSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNHSFFKQCK 302 (314)
T ss_pred cccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcCchHhhhc
Confidence 0000000 00001111223567889999999999999999999999987553
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc |
| >cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=239.49 Aligned_cols=225 Identities=23% Similarity=0.326 Sum_probs=162.2
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCC-chHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC--Cce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPS-DQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA--RHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~-~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~--~~~ 496 (667)
.+|+..+.||+|+||.||+|.. .++..+|+|.+...... ......+.+.+|++++++++||||+++++++.+. ...
T Consensus 2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~ 81 (264)
T cd06653 2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL 81 (264)
T ss_pred CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence 3678889999999999999976 45788999986432211 1123345789999999999999999999998764 457
Q ss_pred EEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCC--
Q 042735 497 ILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD-- 550 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~-- 550 (667)
++|+||+++++|.+.+..... ..|.||||+||+++.++.+||+|||+++.....
T Consensus 82 ~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~ 161 (264)
T cd06653 82 SIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICM 161 (264)
T ss_pred EEEEEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECccccccccccccc
Confidence 899999999999887653211 123499999999999999999999999865321
Q ss_pred -CCCcccccccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 551 -SSNWSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 551 -~~~~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
....+...|+..|+|||+ +.++|||||||++|||++|+.||..... .............+..+..
T Consensus 162 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~~~~~~~~~~~~p~~---- 233 (264)
T cd06653 162 SGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEA----MAAIFKIATQPTKPMLPDG---- 233 (264)
T ss_pred cCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCH----HHHHHHHHcCCCCCCCCcc----
Confidence 112234568999999993 5689999999999999999999853211 1111111000011111211
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
....+.+++.+||. +|.+|||+.+++.+.+
T Consensus 234 --~~~~~~~~i~~~l~-~~~~r~~~~~~~~~~~ 263 (264)
T cd06653 234 --VSDACRDFLKQIFV-EEKRRPTAEFLLRHPF 263 (264)
T ss_pred --cCHHHHHHHHHHhc-CcccCccHHHHhcCCC
Confidence 11246678889999 5799999999987654
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho |
| >cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=247.37 Aligned_cols=236 Identities=22% Similarity=0.317 Sum_probs=162.9
Q ss_pred HHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC---
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR--- 494 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~--- 494 (667)
+.++|+..+.||+|+||.||+|... ++..+|+|++....... .....+.+|++++++++||||+++++++.+..
T Consensus 5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~--~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~ 82 (302)
T cd07864 5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKE--GFPITAIREIKILRQLNHRNIVNLKEIVTDKQDAL 82 (302)
T ss_pred hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeeccccc--CchHHHHHHHHHHHhCCCCCeeeeeheecCcchhh
Confidence 5678999999999999999999875 57889999886432211 22346788999999999999999999987654
Q ss_pred -------ceEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEeccc
Q 042735 495 -------HSILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFG 542 (667)
Q Consensus 495 -------~~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFG 542 (667)
..++|+||+++ ++...+.... ...|.||||+||++++++.+||+|||
T Consensus 83 ~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~kl~dfg 161 (302)
T cd07864 83 DFKKDKGAFYLVFEYMDH-DLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFG 161 (302)
T ss_pred hccccCCcEEEEEcccCc-cHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEEeCccc
Confidence 78999999986 5555443211 11234999999999999999999999
Q ss_pred ccccccCCCC-CcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh-------h
Q 042735 543 IAKFLKPDSS-NWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM-------R 607 (667)
Q Consensus 543 la~~~~~~~~-~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~-------~ 607 (667)
+++....... ......++..|+||| ++.++|||||||++|||++|+.||............... .
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (302)
T cd07864 162 LARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSPCPAV 241 (302)
T ss_pred ccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhh
Confidence 9987654331 223345688899999 245799999999999999999998632211000000000 0
Q ss_pred hccc--------cCCCCC--CC-CCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 608 LDEM--------LDPRLP--PP-SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 608 ~~~~--------~~~~~~--~~-~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
...+ .++... .. ..........+.+++.+||+.+|++|||+.+++.+.|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~ 302 (302)
T cd07864 242 WPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALNSPWL 302 (302)
T ss_pred cccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhcCCCC
Confidence 0000 000000 00 00000112357788999999999999999999987653
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely |
| >cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=243.26 Aligned_cols=229 Identities=18% Similarity=0.284 Sum_probs=159.7
Q ss_pred CcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeC--CceEE
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHA--RHSIL 498 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~--~~~~l 498 (667)
|...+.||+|+||.||+|.. .++..+|+|++....... ......+|+.++.++. ||||+++++++.+. +..++
T Consensus 1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~---~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~l 77 (282)
T cd07831 1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSL---EQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLAL 77 (282)
T ss_pred CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCc---hhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEE
Confidence 45567899999999999975 467889999876532211 1234567999999986 99999999999987 88999
Q ss_pred EEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 499 IYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
||||++ |++.+.+.... ...|.||||+||+++. +.+||+|||+++.......
T Consensus 78 v~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~- 154 (282)
T cd07831 78 VFELMD-MNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCRGIYSKPP- 154 (282)
T ss_pred EEecCC-ccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcC-CCeEEEecccccccccCCC-
Confidence 999997 57766664321 1123499999999999 9999999999987643322
Q ss_pred cccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCC-----------CChhhhhh-hhccccCC
Q 042735 554 WSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSIL-----------PSPSVINM-RLDEMLDP 614 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~-----------~~~~~~~~-~~~~~~~~ 614 (667)
.....|+..|+|||+ +.++|||||||++|||++|+.||....... +....... ......+.
T Consensus 155 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (282)
T cd07831 155 YTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNY 234 (282)
T ss_pred cCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccccccc
Confidence 233568899999993 458999999999999999999985322100 00000000 00000000
Q ss_pred CCCCCCCc-----hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 615 RLPPPSPD-----VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 615 ~~~~~~~~-----~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..+..... .......+.+++.+||+.+|++|||+++++++.||
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~~~~ 282 (282)
T cd07831 235 NFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALRHPYF 282 (282)
T ss_pred cCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhhCCCC
Confidence 11110000 01123467889999999999999999999998764
|
Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. |
| >KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-29 Score=246.69 Aligned_cols=233 Identities=21% Similarity=0.271 Sum_probs=170.2
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
+.|..-++||+|+||.||-++. .+|+.+|.|++.+.... ......-...|-.++.++..|.||.+--.|...+.+++|
T Consensus 185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiK-kr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClV 263 (591)
T KOG0986|consen 185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIK-KRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLV 263 (591)
T ss_pred cceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHH-HhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEE
Confidence 5688889999999999999975 56899999988654321 112233467899999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 500 YEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
+..|.||+|.-++..... ....|+||+|||||+.|+++|+|.|+|..+.....
T Consensus 264 LtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~~- 342 (591)
T KOG0986|consen 264 LTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGKP- 342 (591)
T ss_pred EEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceEEecCCCCc-
Confidence 999999999877654321 01129999999999999999999999987765443
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
.+..+||.+||||| |+..+|+||+||++|||+.|+.||.....-..... .+.+..+ ....++....
T Consensus 343 ~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eE-vdrr~~~-~~~ey~~kFS------ 414 (591)
T KOG0986|consen 343 IRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREE-VDRRTLE-DPEEYSDKFS------ 414 (591)
T ss_pred cccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHH-HHHHHhc-chhhcccccC------
Confidence 33458999999999 88899999999999999999999853221100001 1111000 0111221111
Q ss_pred HHHHHHHHhccccCCCCCC-----CHHHHHHHHHHhhhhhc
Q 042735 628 ISIMEVAFSCLDVSPESRP-----TMQTITQQLLFSLVYFS 663 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~~ 663 (667)
.+...+...-+.+||++|- .+++|.+|.+|..+.|-
T Consensus 415 ~eakslc~~LL~Kdp~~RLGcrg~ga~evk~HpfFk~lnw~ 455 (591)
T KOG0986|consen 415 EEAKSLCEGLLTKDPEKRLGCRGEGAQEVKEHPFFKDLNWR 455 (591)
T ss_pred HHHHHHHHHHHccCHHHhccCCCcCcchhhhCcccccCCHh
Confidence 1233444456899999884 57799999999877663
|
|
| >cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=247.93 Aligned_cols=222 Identities=25% Similarity=0.360 Sum_probs=162.4
Q ss_pred CcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|+..+.||+|+||.||+|+. .++..+|+|.+...... .....+++.+|++++++++|||++++++++......++|||
T Consensus 17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 95 (308)
T cd06634 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQ-SNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME 95 (308)
T ss_pred HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEeccccc-ChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEE
Confidence 55567899999999999986 45778999987542211 12334568899999999999999999999999999999999
Q ss_pred ecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 502 YLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 502 y~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
|+. |++.+.+.... ...|.||||+||+++.++.+||+|||++...... ..
T Consensus 96 ~~~-~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~----~~ 170 (308)
T cd06634 96 YCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA----NX 170 (308)
T ss_pred ccC-CCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcEEECCcccceeecCc----cc
Confidence 997 57766543211 1123499999999999999999999999865432 24
Q ss_pred ccccccccCCCC---------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 557 LVGTYRYVAPDY---------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 557 ~~Gt~~y~aPE~---------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
..|++.|+|||+ +.++|||||||++|||+||+.|+...... ....... ....+.... . ...
T Consensus 171 ~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~----~~~~~~~-~~~~~~~~~--~---~~~ 240 (308)
T cd06634 171 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM----SALYHIA-QNESPALQS--G---HWS 240 (308)
T ss_pred ccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHH----HHHHHHh-hcCCCCcCc--c---ccc
Confidence 568999999993 44799999999999999999996432110 0000000 001111111 1 112
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..+.+++.+||+.+|++||++++++++.++...
T Consensus 241 ~~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~~~ 273 (308)
T cd06634 241 EYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRE 273 (308)
T ss_pred HHHHHHHHHHhhCCcccCCCHHHHhhCcccccc
Confidence 346678889999999999999999999887654
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin |
| >cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-28 Score=246.92 Aligned_cols=233 Identities=21% Similarity=0.320 Sum_probs=166.3
Q ss_pred CCcCcceeecccCeEEEEEEe----CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCce
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHS 496 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~----~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~ 496 (667)
+|+..+.||+|+||.||+|.. .++..+|||.+............+.+.+|++++.+++ ||||+++++.+..++..
T Consensus 1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~ 80 (288)
T cd05583 1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL 80 (288)
T ss_pred CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence 366778899999999999974 3467899998764322222233457889999999994 99999999999999999
Q ss_pred EEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
++||||+++|+|.+.+..... ..|.||||+||+++.++.+||+|||+++.......
T Consensus 81 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~ 160 (288)
T cd05583 81 HLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEE 160 (288)
T ss_pred EEEEecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECccccccccccc
Confidence 999999999999887653211 11339999999999999999999999986543322
Q ss_pred C-cccccccccccCCCC--------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 553 N-WSALVGTYRYVAPDY--------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 553 ~-~~~~~Gt~~y~aPE~--------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
. .....|+..|+|||+ +.++||||||+++|||+||+.||.............. .......+.+ ..
T Consensus 161 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~----~~~~~~~~~~-~~- 234 (288)
T cd05583 161 ERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISR----RILKSKPPFP-KT- 234 (288)
T ss_pred cccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHH----HHHccCCCCC-cc-
Confidence 1 223568999999993 4579999999999999999999753221111111111 1111111111 11
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHH---HHHHHHHHhhhhh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQ---TITQQLLFSLVYF 662 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~---ev~~~l~~~~~~~ 662 (667)
....+.+++.+||+.+|++|||+. +++++.++....+
T Consensus 235 --~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~~~~~~~~ 274 (288)
T cd05583 235 --MSAEARDFIQKLLEKDPKKRLGANGADEIKNHPFFQGIDW 274 (288)
T ss_pred --cCHHHHHHHHHHhcCCHhhccCcchHHHHhcCcccccCCH
Confidence 112456788899999999999964 5577777665543
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines |
| >KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-28 Score=259.95 Aligned_cols=219 Identities=25% Similarity=0.449 Sum_probs=167.6
Q ss_pred cCcceeecccCeEEEEEEe-CCC----ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 424 DAKYCIGSGRHGSVYRAEL-PSK----EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 424 ~~~~~lg~g~~g~vy~~~~-~~~----~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
....+||+|+||+||+|.+ +.+ .+||+|++..... .+..++|..|+-+|++++|||+++++|+|.... ..|
T Consensus 699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~---~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~ql 774 (1177)
T KOG1025|consen 699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTS---PKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQL 774 (1177)
T ss_pred hhhceeccccceeEEeeeEecCCceecceeEEEEeeccCC---chhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHH
Confidence 3457899999999999975 444 3689998765422 233467999999999999999999999998765 889
Q ss_pred EEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 499 IYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
|.+||+.|.|.++++.++. .-|.||.++|||+..-..+||.|||+|+.+.++...
T Consensus 775 vtq~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~e 854 (1177)
T KOG1025|consen 775 VTQLMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKE 854 (1177)
T ss_pred HHHhcccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhheeecCCCeEEEEecchhhccCccccc
Confidence 9999999999998875431 113499999999999999999999999999887766
Q ss_pred cccccc--cccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchH
Q 042735 554 WSALVG--TYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624 (667)
Q Consensus 554 ~~~~~G--t~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (667)
+++..| .+.|||=| |+.++|||||||++||++| |..|++.... ..+ ...++. ..+++.+.
T Consensus 855 y~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~----~eI-~dlle~--geRLsqPp---- 923 (1177)
T KOG1025|consen 855 YSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPA----EEI-PDLLEK--GERLSQPP---- 923 (1177)
T ss_pred ccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCH----HHh-hHHHhc--cccCCCCC----
Confidence 555444 36788887 7899999999999999999 8899764331 111 111111 12233221
Q ss_pred HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
...+.+..++.+||..|+..||+|.++..+...
T Consensus 924 iCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~ 956 (1177)
T KOG1025|consen 924 ICTIDVYMVMVKCWMIDADSRPTFKELAEEFSR 956 (1177)
T ss_pred CccHHHHHHHHHHhccCcccCccHHHHHHHHHH
Confidence 234567788899999999999999998876543
|
|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-29 Score=275.17 Aligned_cols=238 Identities=25% Similarity=0.321 Sum_probs=173.7
Q ss_pred HHHHHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 416 IIRAINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 416 ~~~~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
+.-.-+||++.++||+|+||.|..++.+ +++.+|.|++.+-.-. ...+...|..|-++|..-+.+=||+++-.|.+++
T Consensus 70 lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMl-Kr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~ 148 (1317)
T KOG0612|consen 70 LRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEML-KRAETACFREERDIMVFGNSEWIVQLHYAFQDER 148 (1317)
T ss_pred HhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHh-hchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCcc
Confidence 3334578999999999999999999875 4778999987641100 1123456889999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhcccc-C-----------------------CcccccccCCeeecCCCceEEecccccccccCC
Q 042735 495 HSILIYEYLKRGSLATNLSNDA-A-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~-~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
++|+|||||+||+|-..+..-. . ..|.||||+|||||..|++||+|||-+-.+..+
T Consensus 149 ~LYlVMdY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~d 228 (1317)
T KOG0612|consen 149 YLYLVMDYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDAD 228 (1317)
T ss_pred ceEEEEecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCcEeeccchhHHhcCCC
Confidence 9999999999999987775432 1 124599999999999999999999998776644
Q ss_pred -CCCcccccccccccCCC-----------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCC
Q 042735 551 -SSNWSALVGTYRYVAPD-----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618 (667)
Q Consensus 551 -~~~~~~~~Gt~~y~aPE-----------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (667)
.....+.+|||.|++|| |+..+|+||+||++|||+.|..||...+-+..+..+.+- .+.+ .+|.
T Consensus 229 G~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslveTY~KIm~h--k~~l--~FP~ 304 (1317)
T KOG0612|consen 229 GTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLVETYGKIMNH--KESL--SFPD 304 (1317)
T ss_pred CcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHHHHHHHHHhch--hhhc--CCCc
Confidence 33445678999999998 788999999999999999999998533322111111110 0111 1221
Q ss_pred CCCchHHHHHHHHHHHHhccccCCCCCCC---HHHHHHHHHHhhhhhc
Q 042735 619 PSPDVQGKLISIMEVAFSCLDVSPESRPT---MQTITQQLLFSLVYFS 663 (667)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt---~~ev~~~l~~~~~~~~ 663 (667)
....... ..+++.+ +-.+|+.|-. .+++..|+||.++.|+
T Consensus 305 -~~~VSee---akdLI~~-ll~~~e~RLgrngiedik~HpFF~g~~W~ 347 (1317)
T KOG0612|consen 305 -ETDVSEE---AKDLIEA-LLCDREVRLGRNGIEDIKNHPFFEGIDWD 347 (1317)
T ss_pred -ccccCHH---HHHHHHH-HhcChhhhcccccHHHHHhCccccCCChh
Confidence 1112222 2233333 2236788887 9999999999998885
|
|
| >cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-28 Score=243.28 Aligned_cols=222 Identities=23% Similarity=0.304 Sum_probs=164.6
Q ss_pred eecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCCCC
Q 042735 429 IGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGS 507 (667)
Q Consensus 429 lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~g~ 507 (667)
||+|+||.||+|+... ++.+++|.+...... .....+.+.+|++++.+++||||+++++.+...+..++||||+++|+
T Consensus 1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~ 79 (265)
T cd05579 1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMI-RKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGD 79 (265)
T ss_pred CCCCCceEEEEEEECCCCCEEEEEEecchhhh-hhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCc
Confidence 5899999999998764 889999988653221 12334678899999999999999999999999999999999999999
Q ss_pred hHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCC--------Ccc
Q 042735 508 LATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS--------NWS 555 (667)
Q Consensus 508 L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~--------~~~ 555 (667)
|.+.+..... ..|.||+|+||+++.++.+||+|||++........ ...
T Consensus 80 L~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~ 159 (265)
T cd05579 80 LASLLENVGSLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDK 159 (265)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCccccccccccccc
Confidence 9887754211 12349999999999999999999999986443211 223
Q ss_pred cccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 556 ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
...++..|+||| ++.++||||||+++||++||+.||..... .......... ....+... .....
T Consensus 160 ~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~----~~~~~~~~~~--~~~~~~~~----~~~~~ 229 (265)
T cd05579 160 RIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETP----EEIFQNILNG--KIEWPEDV----EVSDE 229 (265)
T ss_pred CcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHhcC--CcCCCccc----cCCHH
Confidence 456888999999 35689999999999999999999753221 1111111110 11111111 01235
Q ss_pred HHHHHHhccccCCCCCCCH---HHHHHHHHHhhhh
Q 042735 630 IMEVAFSCLDVSPESRPTM---QTITQQLLFSLVY 661 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RPt~---~ev~~~l~~~~~~ 661 (667)
+.+++.+||+.+|++|||+ .+++++.||..+.
T Consensus 230 ~~~~i~~~l~~~p~~Rpt~~~~~~~l~~~~~~~~~ 264 (265)
T cd05579 230 AIDLISKLLVPDPEKRLGAKSIEEIKNHPFFKGID 264 (265)
T ss_pred HHHHHHHHhcCCHhhcCCCccHHHHhcCccccCCC
Confidence 6678889999999999999 8999988886554
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re |
| >cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=244.85 Aligned_cols=227 Identities=24% Similarity=0.388 Sum_probs=162.7
Q ss_pred HcCCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~ 497 (667)
.++|+..+.||+|+||.||+|.... +..+|||.+..... .....++.+|+.++.+.. ||||++++|++.+....+
T Consensus 14 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~---~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~ 90 (296)
T cd06618 14 LNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGN---KEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVF 90 (296)
T ss_pred cchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCC---hHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEE
Confidence 3577888999999999999998865 78899999864322 122346777888777775 999999999999999999
Q ss_pred EEEEecCCCChHHHhcc--------------------------ccCCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 498 LIYEYLKRGSLATNLSN--------------------------DAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~--------------------------~~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
+||||+++ ++...... .....|.||+|+||+++.++.+||+|||+++......
T Consensus 91 ~v~e~~~~-~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~ 169 (296)
T cd06618 91 ICMELMST-CLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSK 169 (296)
T ss_pred EEeeccCc-CHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECccccchhccCCC
Confidence 99999864 44332211 1123355999999999999999999999998654322
Q ss_pred CCcccccccccccCCCC----------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 552 SNWSALVGTYRYVAPDY----------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE~----------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
. .....|++.|+|||+ +.++|||||||++|||++|+.||..... ........... ..+..+...
T Consensus 170 ~-~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~---~~~~~~~~~~~-~~~~~~~~~- 243 (296)
T cd06618 170 A-KTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKT---EFEVLTKILQE-EPPSLPPNE- 243 (296)
T ss_pred c-ccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchh---HHHHHHHHhcC-CCCCCCCCC-
Confidence 2 233468889999993 3479999999999999999999753211 00111111111 011111111
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
....++.+++.+||+.+|++||++++++++.|+..
T Consensus 244 ---~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~ 278 (296)
T cd06618 244 ---GFSPDFCSFVDLCLTKDHRKRPKYRELLQHPFIRR 278 (296)
T ss_pred ---CCCHHHHHHHHHHccCChhhCCCHHHHhcChhhhc
Confidence 11235678888999999999999999999988754
|
Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it |
| >PTZ00024 cyclin-dependent protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=251.03 Aligned_cols=234 Identities=18% Similarity=0.233 Sum_probs=161.8
Q ss_pred cceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchH----------HhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 426 KYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQI----------ADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~----------~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
.+.||+|+||.||+|.. .+++.+|||++......... .....+.+|++++++++||||+++++++...+
T Consensus 14 ~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 93 (335)
T PTZ00024 14 GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGD 93 (335)
T ss_pred hhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCC
Confidence 46799999999999975 46889999987643221100 00124779999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccC-
Q 042735 495 HSILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKP- 549 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~- 549 (667)
..++||||++ |+|.+.+.... ...|.||||+||+++.++.+||+|||+++....
T Consensus 94 ~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~~~kl~dfg~~~~~~~~ 172 (335)
T PTZ00024 94 FINLVMDIMA-SDLKKVVDRKIRLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLARRYGYP 172 (335)
T ss_pred cEEEEEeccc-cCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCCCCEEECCccceeecccc
Confidence 9999999997 68877664321 112449999999999999999999999986541
Q ss_pred -------------CCCCcccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhh--
Q 042735 550 -------------DSSNWSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR-- 607 (667)
Q Consensus 550 -------------~~~~~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~-- 607 (667)
.........+++.|+|||+ +.++|||||||++|||+||+.||...........+....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~i~~~~~~ 252 (335)
T PTZ00024 173 PYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRIFELLGT 252 (335)
T ss_pred cccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCC
Confidence 1111223457889999993 557999999999999999999975332110000000000
Q ss_pred -----hcc--------ccCCCCCCCCCc-hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 608 -----LDE--------MLDPRLPPPSPD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 608 -----~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
... ......+..... .......+.+++.+||+.+|++|||++|++.+.||...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~~~~~~~ 319 (335)
T PTZ00024 253 PNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALKHEYFKSD 319 (335)
T ss_pred CchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhcCcccCCC
Confidence 000 000000000000 00112356788999999999999999999999998754
|
|
| >cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-27 Score=247.07 Aligned_cols=230 Identities=19% Similarity=0.231 Sum_probs=160.7
Q ss_pred eeecc--cCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 428 CIGSG--RHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 428 ~lg~g--~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
.||+| +||+||+|.. .+++.||+|.+...... ....+.+.+|+.+++.++|||||++++++..++..++||||+.
T Consensus 5 ~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~ 82 (328)
T cd08226 5 EIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCT--EEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMA 82 (328)
T ss_pred HhCCcccCceeEEEEEEcCCCcEEEEEEeccccCC--HHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEeccc
Confidence 45666 8999999986 56899999987643222 2334678899999999999999999999999999999999999
Q ss_pred CCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC-----
Q 042735 505 RGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN----- 553 (667)
Q Consensus 505 ~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~----- 553 (667)
+|++.+.+.... ...|.||||+||+++.++.+|++|||.+.........
T Consensus 83 ~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (328)
T cd08226 83 YGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVY 162 (328)
T ss_pred CCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccccccc
Confidence 999988775321 1123499999999999999999999865433221111
Q ss_pred --cccccccccccCCCC--------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh-------------h---
Q 042735 554 --WSALVGTYRYVAPDY--------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM-------------R--- 607 (667)
Q Consensus 554 --~~~~~Gt~~y~aPE~--------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~-------------~--- 607 (667)
.....++..|||||+ +.++|||||||++|||++|+.||............... .
T Consensus 163 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (328)
T cd08226 163 DFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEESR 242 (328)
T ss_pred cccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccchhhhh
Confidence 011235677999993 46789999999999999999998532110000000000 0
Q ss_pred ------------hc---------cccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 608 ------------LD---------EMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 608 ------------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.. ...+..+.. +........+.+++.+||+.||++|||+.|++++.|+....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~~~~~~~ 315 (328)
T cd08226 243 MKNSQSGVDSGIGESVVAAGMTQTMTSERLRT--PSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHAFFKQVK 315 (328)
T ss_pred hccchhhhhcccccchhccccccccccccccc--hhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhCHHHHHHH
Confidence 00 000000000 11112334678899999999999999999999999987543
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig |
| >cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5 | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-28 Score=251.80 Aligned_cols=236 Identities=20% Similarity=0.305 Sum_probs=166.7
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe----CCc
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH----ARH 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~----~~~ 495 (667)
++|+..+.||+|+||.||+|.. .++..+|+|++...... ....+.+.+|+.++++++||||+++++++.. ...
T Consensus 5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 82 (334)
T cd07855 5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDV--PTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKD 82 (334)
T ss_pred hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEecccccc--ccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCce
Confidence 6788889999999999999975 46889999988653221 1234567889999999999999999998753 356
Q ss_pred eEEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 496 SILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
.++||||+. |+|.+++..... ..|.||||+||++++++.+||+|||+++......
T Consensus 83 ~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~ 161 (334)
T cd07855 83 VYVVMDLME-SDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSP 161 (334)
T ss_pred EEEEEehhh-hhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEecccccceeecccC
Confidence 899999996 588777643211 1234999999999999999999999998654322
Q ss_pred C----CcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC-----------CChhhh----h
Q 042735 552 S----NWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL-----------PSPSVI----N 605 (667)
Q Consensus 552 ~----~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~-----------~~~~~~----~ 605 (667)
. ......|+..|+||| ++.++|||||||++|||++|+.||....... +..... .
T Consensus 162 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 241 (334)
T cd07855 162 TEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGS 241 (334)
T ss_pred cCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhch
Confidence 1 123457899999999 3568999999999999999999985322110 000000 0
Q ss_pred hhhcccc---CCCCCCCCCc-hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 606 MRLDEML---DPRLPPPSPD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 606 ~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
....... ....+.+... .......+.+++.+||+.+|++|||+++++.+.|+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~~~~ 299 (334)
T cd07855 242 DRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQHPFLAQ 299 (334)
T ss_pred hhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhChhhhh
Confidence 0000000 0000000000 0112345778899999999999999999999999864
|
Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the |
| >KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-28 Score=254.29 Aligned_cols=165 Identities=32% Similarity=0.532 Sum_probs=135.4
Q ss_pred cCcceeecccCeEEEEEE-eCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC------Cce
Q 042735 424 DAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA------RHS 496 (667)
Q Consensus 424 ~~~~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~------~~~ 496 (667)
...+.||+|+||.||+|+ ..+|+.||||.++.... .+..+...+|+++|++++|||||+++|+=.+. +..
T Consensus 16 ~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~---~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~ 92 (732)
T KOG4250|consen 16 EMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESS---LRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLP 92 (732)
T ss_pred eehhhhcCCccceeeeecccccccchhHHhhhhhcc---cchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccc
Confidence 345679999999999998 57799999999876432 23455788999999999999999999876543 467
Q ss_pred EEEEEecCCCChHHHhccccC---------------------------CcccccccCCeeec--CCCc--eEEecccccc
Q 042735 497 ILIYEYLKRGSLATNLSNDAA---------------------------AEELDISSKNVLLD--LEHK--AHVSDFGIAK 545 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~---------------------------~~~~dlk~~NiLld--~~~~--~kl~DFGla~ 545 (667)
.+|||||++|||+..|..... ..|+||||.||++- ++|. -||+|||.||
T Consensus 93 vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Ar 172 (732)
T KOG4250|consen 93 VLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAAR 172 (732)
T ss_pred eEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeecccccc
Confidence 899999999999988865422 12459999999994 3333 5999999999
Q ss_pred cccCCCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCC
Q 042735 546 FLKPDSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRG 592 (667)
Q Consensus 546 ~~~~~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~ 592 (667)
.++++. ..++++||+.|.+|| |+..+|.|||||++||.+||..||-
T Consensus 173 el~d~s-~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~ 225 (732)
T KOG4250|consen 173 ELDDNS-LFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFI 225 (732)
T ss_pred cCCCCC-eeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCC
Confidence 887655 556789999999998 5667999999999999999999975
|
|
| >PHA03390 pk1 serine/threonine-protein kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-27 Score=237.53 Aligned_cols=224 Identities=21% Similarity=0.298 Sum_probs=158.1
Q ss_pred HHHHHHHcCCcCccee--ecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEE
Q 042735 414 VEIIRAINDFDAKYCI--GSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGF 489 (667)
Q Consensus 414 ~~~~~~~~~f~~~~~l--g~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~ 489 (667)
.+.....++|+..+.+ |+|+||.||++.. .++..+|+|.+...... . .|+.....+ +||||++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~-------~--~e~~~~~~~~~h~~iv~~~~~ 77 (267)
T PHA03390 7 SELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFN-------A--IEPMVHQLMKDNPNFIKLYYS 77 (267)
T ss_pred HHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcc-------h--hhHHHHHHhhcCCCEEEEEEE
Confidence 3444556677776666 9999999999976 45778888887542111 0 122222212 69999999999
Q ss_pred EEeCCceEEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCC-ceEEeccccc
Q 042735 490 CSHARHSILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEH-KAHVSDFGIA 544 (667)
Q Consensus 490 ~~~~~~~~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~-~~kl~DFGla 544 (667)
+...+..++||||+++|+|.+.+..... ..|.||||+||+++.++ .+||+|||++
T Consensus 78 ~~~~~~~~iv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~ 157 (267)
T PHA03390 78 VTTLKGHVLIMDYIKDGDLFDLLKKEGKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLC 157 (267)
T ss_pred EecCCeeEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccc
Confidence 9999999999999999999988754321 11349999999999988 9999999999
Q ss_pred ccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCC
Q 042735 545 KFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618 (667)
Q Consensus 545 ~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (667)
+..... ....|+..|+||| ++.++|||||||++|||+||+.||.............. .......+.
T Consensus 158 ~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~----~~~~~~~~~ 229 (267)
T PHA03390 158 KIIGTP----SCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLL----KRQQKKLPF 229 (267)
T ss_pred eecCCC----ccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHH----HhhcccCCc
Confidence 865432 2346899999999 45689999999999999999999863221111111110 111111111
Q ss_pred CCCchHHHHHHHHHHHHhccccCCCCCCC-HHHHHHHHHHh
Q 042735 619 PSPDVQGKLISIMEVAFSCLDVSPESRPT-MQTITQQLLFS 658 (667)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt-~~ev~~~l~~~ 658 (667)
. + .....+.+++.+||+.+|.+||+ ++|++++.|+.
T Consensus 230 ~-~---~~~~~~~~li~~~l~~~p~~R~~~~~~~l~h~~~~ 266 (267)
T PHA03390 230 I-K---NVSKNANDFVQSMLKYNINYRLTNYNEIIKHPFLK 266 (267)
T ss_pred c-c---ccCHHHHHHHHHHhccChhhCCchHHHHhcCCccc
Confidence 1 1 12234667888999999999996 69999988874
|
|
| >cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=248.05 Aligned_cols=235 Identities=21% Similarity=0.300 Sum_probs=165.7
Q ss_pred HHHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe-CCc
Q 042735 418 RAINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH-ARH 495 (667)
Q Consensus 418 ~~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~-~~~ 495 (667)
...++|+..+.||+|+||.||+|.. .++..+|||++....... ...+.+.+|++++++++|||||++++++.. ...
T Consensus 7 ~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~ 84 (328)
T cd07856 7 EITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTP--VLAKRTYRELKLLKHLRHENIISLSDIFISPLED 84 (328)
T ss_pred ccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEeccccccc--chhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCc
Confidence 4567899999999999999999975 468889999876533221 234568899999999999999999999876 557
Q ss_pred eEEEEEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 496 SILIYEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
.++|+||+ +++|.+.+..... ..|.||||+||+++.++.+||+|||+++....
T Consensus 85 ~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~--- 160 (328)
T cd07856 85 IYFVTELL-GTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQDP--- 160 (328)
T ss_pred EEEEeehh-ccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCccccccccCC---
Confidence 89999998 4688776643221 12349999999999999999999999985432
Q ss_pred CcccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCC-----------Chhhhh----hhhcc
Q 042735 553 NWSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILP-----------SPSVIN----MRLDE 610 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~-----------~~~~~~----~~~~~ 610 (667)
......|++.|+|||+ +.++|||||||++|||+||+.||........ ...... ....+
T Consensus 161 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (328)
T cd07856 161 QMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLR 240 (328)
T ss_pred CcCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHH
Confidence 2234567889999993 4579999999999999999999753221000 000000 00000
Q ss_pred c---cCCCCCCCCCc-hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 611 M---LDPRLPPPSPD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 611 ~---~~~~~~~~~~~-~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
. .....+.+..+ .......+.+++.+||+.+|++|||+++++.+.|+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~~~~~ 292 (328)
T cd07856 241 FVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAHPYLA 292 (328)
T ss_pred HHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCCccc
Confidence 0 00000000000 001123577888999999999999999999988774
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U |
| >cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=241.35 Aligned_cols=231 Identities=23% Similarity=0.349 Sum_probs=159.5
Q ss_pred CcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc---CCCCeeEEEEEEEeCCc---
Q 042735 423 FDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI---RHRNIVKFYGFCSHARH--- 495 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l---~H~niv~~~g~~~~~~~--- 495 (667)
|+..+.||+|+||.||+|+... +..+|+|++....... .....+.+|++++.++ +|||++++++++...+.
T Consensus 1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~ 78 (287)
T cd07838 1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEE--GIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRE 78 (287)
T ss_pred CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccc--hhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCC
Confidence 4567889999999999998764 7889999986543221 1234566788777665 59999999999988776
Q ss_pred --eEEEEEecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccc
Q 042735 496 --SILIYEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFL 547 (667)
Q Consensus 496 --~~lv~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~ 547 (667)
.+++|||+++ +|.+++..... ..|.|+||+||+++.++.+||+|||++...
T Consensus 79 ~~~~l~~e~~~~-~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~ 157 (287)
T cd07838 79 LKLTLVFEHVDQ-DLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIY 157 (287)
T ss_pred ceeEEEehhccc-CHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCcceec
Confidence 9999999984 78776543210 123499999999999999999999999876
Q ss_pred cCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh---------hh----
Q 042735 548 KPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM---------RL---- 608 (667)
Q Consensus 548 ~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~---------~~---- 608 (667)
..... .....|+..|+||| ++.++|||||||++|||+||++|+............... ..
T Consensus 158 ~~~~~-~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (287)
T cd07838 158 SFEMA-LTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVSL 236 (287)
T ss_pred cCCcc-cccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHhcCCCccc
Confidence 43322 22345788999999 366899999999999999999987633211000000000 00
Q ss_pred -ccccCCCCCCCCCc-hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 609 -DEMLDPRLPPPSPD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 609 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.............. .......+.+++.+||+.||++||+++|++++.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~~~~~ 287 (287)
T cd07838 237 PRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQHPYF 287 (287)
T ss_pred chhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhcCcCC
Confidence 00000000000000 01122456788999999999999999999987654
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both |
| >cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=239.67 Aligned_cols=219 Identities=26% Similarity=0.389 Sum_probs=166.1
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|+||.||+|.. .++..+|+|++...... ......+.+|++++++++||||+++++++.+....++||
T Consensus 1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~--~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~ 78 (256)
T cd08530 1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMS--QKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVM 78 (256)
T ss_pred CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhcc--HHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEe
Confidence 467788999999999999975 46788999987643221 233457889999999999999999999999999999999
Q ss_pred EecCCCChHHHhccc-----cC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 501 EYLKRGSLATNLSND-----AA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 501 ey~~~g~L~~~l~~~-----~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
||+++++|.+++... .. ..+.||+|+||+++.++.+|++|||+++.....
T Consensus 79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~-- 156 (256)
T cd08530 79 EYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLKKN-- 156 (256)
T ss_pred hhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccchhhhccC--
Confidence 999999998876441 10 113399999999999999999999999876544
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
......|++.|+||| ++.++|+||||+++|||++|+.||..... ...... ......+.... ..
T Consensus 157 ~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~-----~~~~~~---~~~~~~~~~~~---~~ 225 (256)
T cd08530 157 MAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSM-----QDLRYK---VQRGKYPPIPP---IY 225 (256)
T ss_pred CcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHH---HhcCCCCCCch---hh
Confidence 222356889999999 35689999999999999999999853221 111111 11111111111 22
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHH
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQL 655 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l 655 (667)
...+.+++.+|+..+|++|||+.|+++++
T Consensus 226 ~~~~~~li~~~l~~~p~~Rp~~~~~l~~p 254 (256)
T cd08530 226 SQDLQNFIRSMLQVKPKLRPNCDKILASP 254 (256)
T ss_pred CHHHHHHHHHHcCCCcccCCCHHHHhcCC
Confidence 34577888999999999999999999864
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an |
| >cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-28 Score=249.70 Aligned_cols=235 Identities=20% Similarity=0.275 Sum_probs=160.7
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC----
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR---- 494 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~---- 494 (667)
+++|+..+.||+|+||.||+|... +++.+|||++......+. ....+.+|++++++++||||+++++++.+..
T Consensus 7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~ 84 (311)
T cd07866 7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDG--FPITALREIKILKKLKHPNVVPLIDMAVERPDKSK 84 (311)
T ss_pred cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCC--cchhHHHHHHHHHhcCCCCccchhhheeccccccc
Confidence 578999999999999999999864 578899998754322111 1235678999999999999999999875543
Q ss_pred ----ceEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccc
Q 042735 495 ----HSILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAK 545 (667)
Q Consensus 495 ----~~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~ 545 (667)
..++||||+.+ ++...+.... ...|.||||+||++++++.+||+|||+++
T Consensus 85 ~~~~~~~lv~~~~~~-~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~ 163 (311)
T cd07866 85 RKRGSVYMVTPYMDH-DLSGLLENPSVKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLAR 163 (311)
T ss_pred ccCceEEEEEecCCc-CHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcCccch
Confidence 46999999985 5554443211 11244999999999999999999999998
Q ss_pred cccCCCC-----------CcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh--
Q 042735 546 FLKPDSS-----------NWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN-- 605 (667)
Q Consensus 546 ~~~~~~~-----------~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~-- 605 (667)
....... ..+...|++.|+||| ++.++|||||||++|||+||++||..............
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~~~~ 243 (311)
T cd07866 164 PYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLC 243 (311)
T ss_pred hccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHh
Confidence 6543211 123346788999999 35679999999999999999999753221100000000
Q ss_pred -----------hhhcc----ccCCCCCCCCCc-hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 606 -----------MRLDE----MLDPRLPPPSPD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 606 -----------~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..+.. ......+..... .......+.+++.+|++.+|++|||+.|++.+.||
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~~~~f 311 (311)
T cd07866 244 GTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALEHPYF 311 (311)
T ss_pred CCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhcCCCC
Confidence 00000 000001100000 00111357789999999999999999999988765
|
Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic |
| >cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-28 Score=244.54 Aligned_cols=224 Identities=24% Similarity=0.394 Sum_probs=168.2
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~l 498 (667)
++|...+.||+|+||.||+|... ++..+|+|.+...... .....+.+.+|++++++++ ||||+++++++...+..++
T Consensus 1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~-~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~l 79 (280)
T cd05581 1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLI-KEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYF 79 (280)
T ss_pred CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhcc-chHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEE
Confidence 36778889999999999999864 6888999987653221 1223457889999999999 9999999999999999999
Q ss_pred EEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCC---
Q 042735 499 IYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS--- 551 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~--- 551 (667)
||||+++|+|.+.+..... ..|.|+||+||+++.++.++++|||++.......
T Consensus 80 v~e~~~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~ 159 (280)
T cd05581 80 VLEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPE 159 (280)
T ss_pred EEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCccccccCCccccc
Confidence 9999999999888754321 1123999999999999999999999998654322
Q ss_pred -----------------CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhh
Q 042735 552 -----------------SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRL 608 (667)
Q Consensus 552 -----------------~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~ 608 (667)
.......|+..|+||| ++.++||||||+++||+++|+.|+....... ... ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~----~~~-~~ 234 (280)
T cd05581 160 SNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYL----TFQ-KI 234 (280)
T ss_pred cCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHHH----HHH-HH
Confidence 1123356889999999 3568999999999999999999986433110 000 00
Q ss_pred ccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCH----HHHHHHHHH
Q 042735 609 DEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTM----QTITQQLLF 657 (667)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~----~ev~~~l~~ 657 (667)
. ......+... ...+.+++.+||+.+|++|||+ ++++++.||
T Consensus 235 ~-~~~~~~~~~~------~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~~~~~ 280 (280)
T cd05581 235 L-KLEYSFPPNF------PPDAKDLIEKLLVLDPQDRLGVNEGYDELKAHPFF 280 (280)
T ss_pred H-hcCCCCCCcc------CHHHHHHHHHHhcCCHhhCCCcccCHHHHhcCCCC
Confidence 0 0111122111 1246678889999999999999 999988764
|
Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto |
| >cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=249.04 Aligned_cols=243 Identities=19% Similarity=0.273 Sum_probs=169.2
Q ss_pred CHHHHHHHHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEE
Q 042735 412 DYVEIIRAINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFC 490 (667)
Q Consensus 412 ~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~ 490 (667)
...++....++|+..+.||+|+||.||+|.. .++..||+|++..... .....+.+.+|++++.+++||||+++++++
T Consensus 8 ~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~ 85 (345)
T cd07877 8 LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ--SIIHAKRTYRELRLLKHMKHENVIGLLDVF 85 (345)
T ss_pred HHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcch--hhHHHHHHHHHHHHHHHcCCCcccceeeee
Confidence 3445666778999999999999999999975 5688899998865322 122345688999999999999999999988
Q ss_pred EeC------CceEEEEEecCCCChHHHhcccc-----------------------CCcccccccCCeeecCCCceEEecc
Q 042735 491 SHA------RHSILIYEYLKRGSLATNLSNDA-----------------------AAEELDISSKNVLLDLEHKAHVSDF 541 (667)
Q Consensus 491 ~~~------~~~~lv~ey~~~g~L~~~l~~~~-----------------------~~~~~dlk~~NiLld~~~~~kl~DF 541 (667)
... ...++++||+ +++|.+.+.... ...|.||||+||+++.++.+||+||
T Consensus 86 ~~~~~~~~~~~~~lv~~~~-~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~df 164 (345)
T cd07877 86 TPARSLEEFNDVYLVTHLM-GADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDF 164 (345)
T ss_pred eecccccccccEEEEehhc-ccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEecc
Confidence 643 3467788876 778876654321 1124499999999999999999999
Q ss_pred cccccccCCCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC-----------Chhh
Q 042735 542 GIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP-----------SPSV 603 (667)
Q Consensus 542 Gla~~~~~~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~-----------~~~~ 603 (667)
|+++..... .....||..|+||| ++.++|||||||++|||++|+.||........ .+..
T Consensus 165 g~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~ 241 (345)
T cd07877 165 GLARHTDDE---MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAEL 241 (345)
T ss_pred ccccccccc---ccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHH
Confidence 999864322 23457899999999 35689999999999999999999753221000 0000
Q ss_pred hhhh----hccccC--CCCCCCCCc--hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 604 INMR----LDEMLD--PRLPPPSPD--VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 604 ~~~~----~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.... ....+. +..+..... .......+.+++.+|++.+|++|||+.+++++.||...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~f~~~ 306 (345)
T cd07877 242 LKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQY 306 (345)
T ss_pred HhhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcChhhhhc
Confidence 0000 000000 000000000 00112346788899999999999999999999998743
|
Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14 |
| >cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-27 Score=241.59 Aligned_cols=232 Identities=21% Similarity=0.297 Sum_probs=164.5
Q ss_pred CcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|+..+.||+|++|.||+|... +++.+++|++....... .....+.+|++++++++||||+++++++..++..++|||
T Consensus 1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e 78 (283)
T cd05118 1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESE--GIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFE 78 (283)
T ss_pred CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccc--hhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEe
Confidence 456678999999999999864 67889999886543221 234578899999999999999999999999999999999
Q ss_pred ecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 502 YLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 502 y~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
|+++ ++.+.+.... ...|.||||+||+++.++.+||+|||.+............
T Consensus 79 ~~~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~~~~ 157 (283)
T cd05118 79 FMDT-DLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTH 157 (283)
T ss_pred ccCC-CHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcccccC
Confidence 9985 7776664421 0113399999999999999999999999876544322333
Q ss_pred ccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh-------hhhccccC------CCC
Q 042735 557 LVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN-------MRLDEMLD------PRL 616 (667)
Q Consensus 557 ~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~-------~~~~~~~~------~~~ 616 (667)
..++..|+|||. +.++|||||||++|||+||+.||.............. .......+ ...
T Consensus 158 ~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (283)
T cd05118 158 YVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSF 237 (283)
T ss_pred ccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhh
Confidence 568889999993 5679999999999999999998753321100000000 00000000 000
Q ss_pred CCC-----CCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 617 PPP-----SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 617 ~~~-----~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
+.. ..........+.+++.+||+.+|.+||++.+++.+.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~~~~~ 283 (283)
T cd05118 238 PKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALAHPYF 283 (283)
T ss_pred ccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhhCCCC
Confidence 000 00011123467789999999999999999999988663
|
Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They |
| >cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=239.98 Aligned_cols=224 Identities=21% Similarity=0.273 Sum_probs=159.3
Q ss_pred CCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCC-chHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPS-DQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~-~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
+|...+.||+|+||.||+|.... +..+++|..+..... ........+.+|+.++++++||||+++++++.+.+..++|
T Consensus 1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 80 (260)
T cd08222 1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCII 80 (260)
T ss_pred CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEE
Confidence 36677889999999999997644 344555554332111 1112234577899999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc----------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 500 YEYLKRGSLATNLSNDA----------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~----------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
|||+++++|.+.+.... ...|.|+||+||+++. +.+||+|||+++......
T Consensus 81 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~ 159 (260)
T cd08222 81 TEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSC 159 (260)
T ss_pred EEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEeec-CCEeecccCceeecCCCc
Confidence 99999999987664210 0113499999999975 569999999998765443
Q ss_pred CCcccccccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 552 SNWSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
.......|++.|+|||+ +.++||||||+++|||++|+.|+..... .... . .......+.. +. .
T Consensus 160 ~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~----~~~~-~---~~~~~~~~~~-~~--~ 228 (260)
T cd08222 160 DLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNF----LSVV-L---RIVEGPTPSL-PE--T 228 (260)
T ss_pred ccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccH----HHHH-H---HHHcCCCCCC-cc--h
Confidence 33345678999999993 5689999999999999999999752211 1111 1 1111111111 11 1
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
...++.+++.+||..+|++||++.|++++.|+
T Consensus 229 ~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~ 260 (260)
T cd08222 229 YSRQLNSIMQSMLNKDPSLRPSAAEILRNPFI 260 (260)
T ss_pred hcHHHHHHHHHHhcCChhhCcCHHHHhhCCCC
Confidence 22356778889999999999999999988653
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check |
| >cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3 | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-27 Score=242.19 Aligned_cols=221 Identities=24% Similarity=0.356 Sum_probs=160.3
Q ss_pred CcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|.....||+|+||.||+|.. .++..+++|++...... .....+.+.+|++++++++|||++++++++.+.+..|+|||
T Consensus 23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 101 (313)
T cd06633 23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQ-TNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVME 101 (313)
T ss_pred hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccC-chHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEe
Confidence 44556799999999999976 45788999987643221 22334568899999999999999999999999999999999
Q ss_pred ecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 502 YLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 502 y~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
|+. |++.+.+.... ...|.||||+||+++.++.+||+|||++..... ...
T Consensus 102 ~~~-~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~----~~~ 176 (313)
T cd06633 102 YCL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSP----ANS 176 (313)
T ss_pred cCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCCCcccCC----CCC
Confidence 996 46655543211 112349999999999999999999999875332 234
Q ss_pred ccccccccCCCC---------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 557 LVGTYRYVAPDY---------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 557 ~~Gt~~y~aPE~---------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
..|+..|+|||+ +.++|||||||++|||++|+.|+...... ....... ....+.... .. ..
T Consensus 177 ~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~---~~~~~~~--~~~~~~~~~--~~---~~ 246 (313)
T cd06633 177 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM---SALYHIA--QNDSPTLQS--NE---WT 246 (313)
T ss_pred ccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChH---HHHHHHH--hcCCCCCCc--cc---cC
Confidence 578999999994 34689999999999999999997532210 0000000 000111111 11 11
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..+.+++.+||+.+|.+||++.+++++.++..
T Consensus 247 ~~l~~li~~~l~~~P~~Rp~~~~~l~~~~~~~ 278 (313)
T cd06633 247 DSFRGFVDYCLQKIPQERPASAELLRHDFVRR 278 (313)
T ss_pred HHHHHHHHHHccCChhhCcCHHHHhcCcccCC
Confidence 24667888999999999999999999877753
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co |
| >cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=247.61 Aligned_cols=236 Identities=20% Similarity=0.283 Sum_probs=167.2
Q ss_pred CCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC-----c
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR-----H 495 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~-----~ 495 (667)
+|...+.||+|+||.||+|... .+..+|+|++..... .....+.+.+|+.++++++||||+++++++...+ .
T Consensus 1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~ 78 (330)
T cd07834 1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFD--DLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFND 78 (330)
T ss_pred CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccc--cchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccc
Confidence 4677889999999999999865 488899998865321 1233467899999999999999999999998775 7
Q ss_pred eEEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
.++||||+++ +|.+.+.... ...|.||||+||+++.++.+||+|||++.......
T Consensus 79 ~~lv~e~~~~-~l~~~l~~~~~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~ 157 (330)
T cd07834 79 VYIVTELMET-DLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDE 157 (330)
T ss_pred eEEEecchhh-hHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceEeecccc
Confidence 8999999984 7877664421 11234999999999999999999999998765443
Q ss_pred ---CCcccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh---------------h
Q 042735 552 ---SNWSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN---------------M 606 (667)
Q Consensus 552 ---~~~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~---------------~ 606 (667)
.......||+.|+|||+ +.++|||||||++|||+||+.||...........+.. .
T Consensus 158 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 237 (330)
T cd07834 158 DEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSE 237 (330)
T ss_pred cccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhhcccc
Confidence 12334568899999993 4579999999999999999999853221000000000 0
Q ss_pred hhccccC---CCCCCCCC-chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 607 RLDEMLD---PRLPPPSP-DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 607 ~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.....+. ........ ........+.+++.+||+.+|++|||+++++++.|+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~ 295 (330)
T cd07834 238 KARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQL 295 (330)
T ss_pred chhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhh
Confidence 0000000 00000000 000112356788999999999999999999999998644
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and |
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=263.94 Aligned_cols=227 Identities=24% Similarity=0.371 Sum_probs=157.8
Q ss_pred HHHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc-
Q 042735 418 RAINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH- 495 (667)
Q Consensus 418 ~~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~- 495 (667)
+-..+|+..+.||+||||.||+++- -+|+.+|||++.-.. ....-....+|+.+++++.|||||+||..+.+...
T Consensus 476 RY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~---s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~ 552 (1351)
T KOG1035|consen 476 RYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKA---SDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAE 552 (1351)
T ss_pred hHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCch---HHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCc
Confidence 4567899999999999999999985 478999999997643 22334568899999999999999999986643211
Q ss_pred --------------------------------------------------------------------------------
Q 042735 496 -------------------------------------------------------------------------------- 495 (667)
Q Consensus 496 -------------------------------------------------------------------------------- 495 (667)
T Consensus 553 ~~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~ 632 (1351)
T KOG1035|consen 553 LTVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSN 632 (1351)
T ss_pred cccccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccccc
Confidence
Q ss_pred --------------------------------------eEEEEEecCCCChHHHhccc----------------------
Q 042735 496 --------------------------------------SILIYEYLKRGSLATNLSND---------------------- 515 (667)
Q Consensus 496 --------------------------------------~~lv~ey~~~g~L~~~l~~~---------------------- 515 (667)
+||=||||+.-.+.+.+...
T Consensus 633 tS~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaY 712 (1351)
T KOG1035|consen 633 TSDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAY 712 (1351)
T ss_pred ccccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence 23334444443333322211
Q ss_pred ---cCCcccccccCCeeecCCCceEEeccccccccc----C--------------CCCCcccccccccccCCC-------
Q 042735 516 ---AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLK----P--------------DSSNWSALVGTYRYVAPD------- 567 (667)
Q Consensus 516 ---~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~----~--------------~~~~~~~~~Gt~~y~aPE------- 567 (667)
+...|+||||.||++|++..|||+|||+|+... . .....|..+||.-|+|||
T Consensus 713 IH~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~ 792 (1351)
T KOG1035|consen 713 IHDQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSS 792 (1351)
T ss_pred HHhCceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhccccc
Confidence 112233999999999999999999999998722 0 011345678999999999
Q ss_pred --CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCC
Q 042735 568 --YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESR 645 (667)
Q Consensus 568 --~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~R 645 (667)
|+.|+|+||+|||++||+.- |+.. ......+...-++.+|.+..........-..++...++.||.+|
T Consensus 793 ~~Yn~KiDmYSLGIVlFEM~yP---F~Ts-------MERa~iL~~LR~g~iP~~~~f~~~~~~~e~slI~~Ll~hdP~kR 862 (1351)
T KOG1035|consen 793 NKYNSKIDMYSLGIVLFEMLYP---FGTS-------MERASILTNLRKGSIPEPADFFDPEHPEEASLIRWLLSHDPSKR 862 (1351)
T ss_pred ccccchhhhHHHHHHHHHHhcc---CCch-------HHHHHHHHhcccCCCCCCcccccccchHHHHHHHHHhcCCCccC
Confidence 78899999999999999854 3211 11122233344555555522222233334466778899999999
Q ss_pred CCHHHHHHHHHH
Q 042735 646 PTMQTITQQLLF 657 (667)
Q Consensus 646 Pt~~ev~~~l~~ 657 (667)
||+.|++..-++
T Consensus 863 PtA~eLL~s~ll 874 (1351)
T KOG1035|consen 863 PTATELLNSELL 874 (1351)
T ss_pred CCHHHHhhccCC
Confidence 999999986443
|
|
| >cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-27 Score=242.25 Aligned_cols=232 Identities=22% Similarity=0.307 Sum_probs=165.0
Q ss_pred CcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|+....||+|+||.||+|... +++.+|+|.+..... .....+.+.+|++++++++|||++++++++.+.+..++|||
T Consensus 1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~--~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e 78 (282)
T cd07829 1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNE--EEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFE 78 (282)
T ss_pred CeeehcccccCcceEEEeeecCCCcEEEEEEeccccc--cccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEec
Confidence 455678999999999999875 488899998875431 12234568899999999999999999999999999999999
Q ss_pred ecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 502 YLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 502 y~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
|++ ++|.+.+.... ...|.||+|+||+++.++.+||+|||+++...........
T Consensus 79 ~~~-~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~ 157 (282)
T cd07829 79 YCD-MDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTH 157 (282)
T ss_pred CcC-cCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcccccCCCccccCc
Confidence 998 58988775431 0123499999999999999999999999876544333334
Q ss_pred ccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhh----------hhhhccc--cCCCCC
Q 042735 557 LVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVI----------NMRLDEM--LDPRLP 617 (667)
Q Consensus 557 ~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~ 617 (667)
..++..|+|||+ +.++|||||||++|||++|+.||............. ....... .+...+
T Consensus 158 ~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (282)
T cd07829 158 EVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFP 237 (282)
T ss_pred cccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhccccccccccc
Confidence 556788999993 458999999999999999999975432110000000 0000000 000011
Q ss_pred CCCCc-----hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 618 PPSPD-----VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 618 ~~~~~-----~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..... .......+.+++.+||+.+|++||++++++.+.||
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~p~~ 282 (282)
T cd07829 238 KFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALKHPYF 282 (282)
T ss_pred ccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhhCcCC
Confidence 00000 00012357789999999999999999999998775
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the |
| >PHA02882 putative serine/threonine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=238.91 Aligned_cols=229 Identities=18% Similarity=0.203 Sum_probs=146.5
Q ss_pred cCCcCcceeecccCeEEEEEEeCCC----ceEEEEecCCCCCCchHHh-------HHHHHHHHHHHHhcCCCCeeEEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSK----EFLAVKKFNSPLPSDQIAD-------QKEFFAEIEALTKIRHRNIVKFYGF 489 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~----~~~avk~~~~~~~~~~~~~-------~~~~~~E~~~l~~l~H~niv~~~g~ 489 (667)
..|...+.||+|+||.||+|...++ ..+|+|+..........+. ......+...+..++|+|+++++++
T Consensus 12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~ 91 (294)
T PHA02882 12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC 91 (294)
T ss_pred CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence 4688889999999999999987554 3455554322111100000 0122344455667899999999997
Q ss_pred EEeCC----ceEEEEEecCCCChHHHhcc------------------------ccCCcccccccCCeeecCCCceEEecc
Q 042735 490 CSHAR----HSILIYEYLKRGSLATNLSN------------------------DAAAEELDISSKNVLLDLEHKAHVSDF 541 (667)
Q Consensus 490 ~~~~~----~~~lv~ey~~~g~L~~~l~~------------------------~~~~~~~dlk~~NiLld~~~~~kl~DF 541 (667)
+.... ..++++|++.. ++.+.+.. .....|.||||+|||++.++.+||+||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~~~~~~l~DF 170 (294)
T PHA02882 92 GSFKRCRMYYRFILLEKLVE-NTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYIIDY 170 (294)
T ss_pred eeEecCCceEEEEEEehhcc-CHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCcEEEEEc
Confidence 76543 34677887643 33322211 112235699999999999999999999
Q ss_pred cccccccCCC-------CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhh-hhh
Q 042735 542 GIAKFLKPDS-------SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVI-NMR 607 (667)
Q Consensus 542 Gla~~~~~~~-------~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~-~~~ 607 (667)
|+|+...... .......||+.|+||| |+.++|||||||++|||+||+.||............. ...
T Consensus 171 Gla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~~ 250 (294)
T PHA02882 171 GIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDF 250 (294)
T ss_pred CCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHHH
Confidence 9998654321 1123357999999999 6789999999999999999999986432110000000 000
Q ss_pred hccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHH
Q 042735 608 LDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655 (667)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l 655 (667)
...+.......+ . ....+.+++..||..+|++||+++++.+.+
T Consensus 251 ~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~ 293 (294)
T PHA02882 251 IKRLHEGKIKIK--N---ANKFIYDFIECVTKLSYEEKPDYDALIKIF 293 (294)
T ss_pred HHHhhhhhhccC--C---CCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence 111111111111 1 112466788899999999999999998754
|
|
| >cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-27 Score=234.00 Aligned_cols=216 Identities=25% Similarity=0.345 Sum_probs=163.0
Q ss_pred eecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCCCC
Q 042735 429 IGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGS 507 (667)
Q Consensus 429 lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~g~ 507 (667)
||+|+||.||++... +++.+|+|.+....... ......+..|++++++++||||+++++.+..++..++||||+++++
T Consensus 1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~ 79 (250)
T cd05123 1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIK-RKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGE 79 (250)
T ss_pred CCCCCceEEEEEEECCCCcEEEEEEeehhhhcc-hHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCc
Confidence 689999999999865 47889999876543221 2234578999999999999999999999999999999999999999
Q ss_pred hHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcccccccccc
Q 042735 508 LATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRY 563 (667)
Q Consensus 508 L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y 563 (667)
|.+.+..... ..|.||||+||+++.++.++|+|||++..............|+..|
T Consensus 80 L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 159 (250)
T cd05123 80 LFSHLSKEGRFSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEY 159 (250)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEcCCCcEEEeecCcceecccCCCcccCCcCCccc
Confidence 9888754321 1133999999999999999999999998765443333456789999
Q ss_pred cCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhc
Q 042735 564 VAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSC 637 (667)
Q Consensus 564 ~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 637 (667)
+|||. +.++|+||||+++||+++|+.||..... ..... .......+.+... ...+.+++.+|
T Consensus 160 ~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~----~~~~~----~~~~~~~~~~~~~----~~~l~~~i~~~ 227 (250)
T cd05123 160 LAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDR----KEIYE----KILKDPLRFPEFL----SPEARDLISGL 227 (250)
T ss_pred cChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH----HHHHH----HHhcCCCCCCCCC----CHHHHHHHHHH
Confidence 99993 5689999999999999999999853321 11111 1111111111111 12466788899
Q ss_pred cccCCCCCCCH---HHHHHHHHH
Q 042735 638 LDVSPESRPTM---QTITQQLLF 657 (667)
Q Consensus 638 l~~~p~~RPt~---~ev~~~l~~ 657 (667)
|..+|++|||+ .++..+.||
T Consensus 228 l~~~p~~R~~~~~~~~l~~~~~f 250 (250)
T cd05123 228 LQKDPTKRLGSGGAEEIKAHPFF 250 (250)
T ss_pred hcCCHhhCCCcccHHHHHhCCCC
Confidence 99999999999 788877654
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the |
| >cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-27 Score=250.50 Aligned_cols=235 Identities=20% Similarity=0.304 Sum_probs=166.0
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc---
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH--- 495 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~--- 495 (667)
.++|+....||+|+||.||+|+.. ++..+|||++...... ....+.+.+|+.++++++||||+++++++...+.
T Consensus 14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 91 (343)
T cd07851 14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQS--AIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLED 91 (343)
T ss_pred cCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccch--hhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccc
Confidence 467888899999999999999874 5788999987643221 2234567889999999999999999998876554
Q ss_pred ---eEEEEEecCCCChHHHhcccc-----------------------CCcccccccCCeeecCCCceEEecccccccccC
Q 042735 496 ---SILIYEYLKRGSLATNLSNDA-----------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 496 ---~~lv~ey~~~g~L~~~l~~~~-----------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~ 549 (667)
.++|+||+ +++|.+.+.... ...|.||||+||+++.++.+||+|||++.....
T Consensus 92 ~~~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~ 170 (343)
T cd07851 92 FQDVYLVTHLM-GADLNNIVKCQKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHTDD 170 (343)
T ss_pred cccEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEccccccccccc
Confidence 89999998 568887664422 112449999999999999999999999986543
Q ss_pred CCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh-------hhc------
Q 042735 550 DSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM-------RLD------ 609 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~-------~~~------ 609 (667)
. .....||..|+||| ++.++|||||||++|||+||+.||............... ...
T Consensus 171 ~---~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 247 (343)
T cd07851 171 E---MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSES 247 (343)
T ss_pred c---ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHHHhhccchh
Confidence 2 23457889999999 356899999999999999999998532211000000000 000
Q ss_pred --cccCCCCCCCCCch----HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 610 --EMLDPRLPPPSPDV----QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 610 --~~~~~~~~~~~~~~----~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..+........... ......+.+++.+||+.+|++|||+.||+++.|+...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~h~~~~~~ 304 (343)
T cd07851 248 ARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALAHPYLAEY 304 (343)
T ss_pred HHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhcCCCcccc
Confidence 00000000000000 0112357789999999999999999999999888643
|
Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK |
| >cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6 | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-27 Score=248.51 Aligned_cols=235 Identities=23% Similarity=0.293 Sum_probs=161.5
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC------
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA------ 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~------ 493 (667)
.+|...+.||+|+||.||+|.. .++..+|+|++..... ...+.+.+|++++++++||||+++++++...
T Consensus 5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~----~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~ 80 (342)
T cd07854 5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDP----QSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTE 80 (342)
T ss_pred cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCC----chHHHHHHHHHHHHhcCCCcchhhHhhhccccccccc
Confidence 5788889999999999999976 5578899998754322 2345688999999999999999999876543
Q ss_pred --------CceEEEEEecCCCChHHHhcccc-----------------------CCcccccccCCeeec-CCCceEEecc
Q 042735 494 --------RHSILIYEYLKRGSLATNLSNDA-----------------------AAEELDISSKNVLLD-LEHKAHVSDF 541 (667)
Q Consensus 494 --------~~~~lv~ey~~~g~L~~~l~~~~-----------------------~~~~~dlk~~NiLld-~~~~~kl~DF 541 (667)
...++||||++ ++|.+.+.... ...|.||||+||+++ +++.+|++||
T Consensus 81 ~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~~kl~df 159 (342)
T cd07854 81 DVGSLTELNSVYIVQEYME-TDLANVLEQGPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDF 159 (342)
T ss_pred ccccccccceEEEEeeccc-ccHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCceEEECCc
Confidence 35789999998 58876654321 112449999999998 4567899999
Q ss_pred cccccccCCCC---CcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhh--------
Q 042735 542 GIAKFLKPDSS---NWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV-------- 603 (667)
Q Consensus 542 Gla~~~~~~~~---~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~-------- 603 (667)
|+++....... ......|+..|+||| ++.++|||||||++|||++|+.||............
T Consensus 160 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~ 239 (342)
T cd07854 160 GLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVR 239 (342)
T ss_pred ccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCC
Confidence 99986543211 112346788999999 345899999999999999999998532210000000
Q ss_pred ---hhhhh----ccccCCCCCCCCCc---hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 604 ---INMRL----DEMLDPRLPPPSPD---VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 604 ---~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..... ............+. ......++.+++.+||+.+|++|||+.|++.+.|+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h~~~~~~ 306 (342)
T cd07854 240 EEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALMHPYMSCY 306 (342)
T ss_pred hHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhCCCccccc
Confidence 00000 00000000000000 00112346688899999999999999999999998643
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi |
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-28 Score=246.65 Aligned_cols=234 Identities=21% Similarity=0.323 Sum_probs=180.8
Q ss_pred HHcCCcCcceeecccCeEEEEEEeCCCc-eEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELPSKE-FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~~~~-~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
.+.++.....||-|+||+|-.+...+.. .+|.|.+++..-. +.+.++....|-.+|...+.|.||++|-.|.+.+..|
T Consensus 418 ~l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIV-dtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvY 496 (732)
T KOG0614|consen 418 KLSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIV-DTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVY 496 (732)
T ss_pred chhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhcc-chhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhh
Confidence 3466777788999999999999876544 4888887765433 2345677889999999999999999999999999999
Q ss_pred EEEEecCCCChHHHhccccCC------------------------cccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 498 LIYEYLKRGSLATNLSNDAAA------------------------EELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~~------------------------~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
+.||-|-||++...|+..... ...||||+|+++|.+|-+||.|||+|+.+.....+
T Consensus 497 mLmEaClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~KT 576 (732)
T KOG0614|consen 497 MLMEACLGGELWTILRDRGSFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRKT 576 (732)
T ss_pred hhHHhhcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHHHhcCceeccCChhheeeccCCceEEeehhhHHHhccCCce
Confidence 999999999999888754321 12399999999999999999999999998877666
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
| ++||||.|+||| .+.++|.||+||++|||+||++||...+.+..+..+.. .++. -.+|.....
T Consensus 577 w-TFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~ILk-Gid~---i~~Pr~I~k----- 646 (732)
T KOG0614|consen 577 W-TFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNLILK-GIDK---IEFPRRITK----- 646 (732)
T ss_pred e-eecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHh-hhhh---hhcccccch-----
Confidence 5 489999999999 46789999999999999999999986654433322211 1111 112221111
Q ss_pred HHHHHHHHhccccCCCCCCC-----HHHHHHHHHHhhhhhcc
Q 042735 628 ISIMEVAFSCLDVSPESRPT-----MQTITQQLLFSLVYFSY 664 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt-----~~ev~~~l~~~~~~~~~ 664 (667)
...+++.+-+..+|.+|-- ..+|.+|-||....|+-
T Consensus 647 -~a~~Lik~LCr~~P~ERLG~~~~gI~DIkkH~Wf~gfdweg 687 (732)
T KOG0614|consen 647 -TATDLIKKLCRDNPTERLGYQKGGINDIKKHRWFEGFDWEG 687 (732)
T ss_pred -hHHHHHHHHHhcCcHhhhccccCChHHHHhhhhhhcCChhh
Confidence 2334555666788999876 78999999999887764
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-29 Score=259.70 Aligned_cols=300 Identities=25% Similarity=0.420 Sum_probs=137.7
Q ss_pred CcEEeccCCcCc-CCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcc
Q 042735 5 LRELHLRDNYLT-GLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALE 82 (667)
Q Consensus 5 L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~ 82 (667)
.+-.|++.|.++ +.+|.....+..++-|.|.+.++. .+|++++.|.+|++|.+++|++.. +-..+.. ..|+.+.+.
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhh
Confidence 344555555555 344554455555555555555554 455555555555555555555431 2222222 224444555
Q ss_pred cccccc-cCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCc
Q 042735 83 NNHFTG-NLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGE 161 (667)
Q Consensus 83 ~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 161 (667)
.|++.. -+|..+..+..|+.|+|+.|+++ ..|..+...+++-.|+|++|+|..++...|.+++.|-+||||+|++ ..
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL-e~ 164 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL-EM 164 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh-hh
Confidence 554432 23444445555555555555544 3344444445555555555555444444444555555555555544 23
Q ss_pred cCccCCCCCCCCEEEccCCcCCC-------------------------CcCccccCCCCcCeeeccCCcccccCCccccC
Q 042735 162 IASNWGKCPKLSTLNVSMNNITR-------------------------SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGK 216 (667)
Q Consensus 162 ~~~~~~~l~~L~~L~L~~n~l~~-------------------------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 216 (667)
+|+.+..+.+|++|.|++|.+.- .+|.++..|.+|..+|||.|.+. ..|+.+-.
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~ 243 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK 243 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh
Confidence 44444444444444444443311 13333444444444444444443 34444444
Q ss_pred CcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCc-cccchhhhcCCCCCEE
Q 042735 217 LNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFI-QELPKELGKLVQLSEL 295 (667)
Q Consensus 217 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~-~~~p~~l~~l~~L~~L 295 (667)
+++|+.|+|++|.++ .+.-..+...+|++|+||.|+++. +|++++.+++|+.|.+.+|++. ..+|+.++++.+|..+
T Consensus 244 l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred hhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 444444444444443 222233333444444444444442 3444555555555544444432 2244444444444444
Q ss_pred ECcCCCCCCcCcccccC
Q 042735 296 ELSHNFLGREIPSQICS 312 (667)
Q Consensus 296 ~l~~n~l~~~ip~~~~~ 312 (667)
..++|.+ .-+|+.+|.
T Consensus 322 ~aanN~L-ElVPEglcR 337 (1255)
T KOG0444|consen 322 HAANNKL-ELVPEGLCR 337 (1255)
T ss_pred Hhhcccc-ccCchhhhh
Confidence 4444443 334444443
|
|
| >KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-27 Score=227.19 Aligned_cols=239 Identities=22% Similarity=0.326 Sum_probs=173.8
Q ss_pred HcCCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~ 497 (667)
+++|+..++||+|+|++|..+++.. .+.+|+|++++....+ .++..-...|-.+..+. +||.+|-++.+|..+..++
T Consensus 249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nd-dedidwvqtek~vfe~asn~pflvglhscfqtesrlf 327 (593)
T KOG0695|consen 249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVND-DEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLF 327 (593)
T ss_pred cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCC-cccchhHHhhHHHHHhccCCCeEEehhhhhcccceEE
Confidence 5789999999999999999998754 5779999887654432 23334455666666655 5999999999999999999
Q ss_pred EEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 498 LIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
.|.||++||+|.-+.+..+ .....|+|.+|||+|.+|++|++|||+++.--.....
T Consensus 328 fvieyv~ggdlmfhmqrqrklpeeharfys~ei~lal~flh~rgiiyrdlkldnvlldaeghikltdygmcke~l~~gd~ 407 (593)
T KOG0695|consen 328 FVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLGPGDT 407 (593)
T ss_pred EEEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccCCceeecccchhhcCCCCCcc
Confidence 9999999999964443321 1112399999999999999999999999965444555
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
.+++||||.|+||| |.-.+|+|++||+|+||+.|+.||+.+....+.....+.....++...+.-+..- .
T Consensus 408 tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilekqiriprsl----s 483 (593)
T KOG0695|consen 408 TSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEKQIRIPRSL----S 483 (593)
T ss_pred cccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhhccccccee----e
Confidence 67899999999998 7789999999999999999999998655333322222222222222222211111 1
Q ss_pred HHHHHHHHhccccCCCCCC------CHHHHHHHHHHhhhhhc
Q 042735 628 ISIMEVAFSCLDVSPESRP------TMQTITQQLLFSLVYFS 663 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RP------t~~ev~~~l~~~~~~~~ 663 (667)
.+...+...-+.+||.+|- -++++..+.+|..+.|+
T Consensus 484 vkas~vlkgflnkdp~erlgc~~~~g~~dik~h~ffr~idwd 525 (593)
T KOG0695|consen 484 VKASHVLKGFLNKDPKERLGCRPQTGFSDIKSHAFFRSIDWD 525 (593)
T ss_pred hhhHHHHHHhhcCCcHHhcCCCcccchhhhhcchhhhhCCHH
Confidence 1223344566899999884 36788888888776665
|
|
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=260.59 Aligned_cols=125 Identities=26% Similarity=0.309 Sum_probs=104.1
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
+++|...+.||+|+||.||+|... +++.||||++...... .......+.+|+.++..++|||||++++++......++
T Consensus 3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~-~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~l 81 (669)
T cd05610 3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMI-NKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYL 81 (669)
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhcc-CHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEE
Confidence 467888999999999999999875 6788999998653221 12334578899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccc
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAK 545 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~ 545 (667)
||||+++|+|.+++.... ...|.||||+|||++.++.+||+|||+++
T Consensus 82 VmEy~~g~~L~~li~~~~~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLKP~NILl~~~g~vkL~DFGls~ 152 (669)
T cd05610 82 VMEYLIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSK 152 (669)
T ss_pred EEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence 999999999988764321 12245999999999999999999999986
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-27 Score=241.13 Aligned_cols=245 Identities=22% Similarity=0.316 Sum_probs=170.7
Q ss_pred cCHHHHHHHHc---CCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEE
Q 042735 411 FDYVEIIRAIN---DFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKF 486 (667)
Q Consensus 411 ~~~~~~~~~~~---~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~ 486 (667)
-.|..+.++-- -|..++.||-|+||.|.+++.-+ ...+|.|.+.+...... ......++|-+||+..+.+=||++
T Consensus 616 SnYiRLkRaKMdKSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~r-nQvaHVKAERDILAEADn~WVVrL 694 (1034)
T KOG0608|consen 616 SNYIRLKRAKMDKSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMR-NQVAHVKAERDILAEADNEWVVRL 694 (1034)
T ss_pred hhHHHHHHhhccccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhh-hhhhhhhhhhhhHhhcCCcceEEE
Confidence 45666666643 37778889999999999997644 56789998765422211 123457789999999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEeccc
Q 042735 487 YGFCSHARHSILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFG 542 (667)
Q Consensus 487 ~g~~~~~~~~~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFG 542 (667)
|-.|.+.+.+|.||||++||++...|....+ ..|.||||+|||||.+|++||+|||
T Consensus 695 yySFQDkdnLYFVMdYIPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFG 774 (1034)
T KOG0608|consen 695 YYSFQDKDNLYFVMDYIPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFG 774 (1034)
T ss_pred EEEeccCCceEEEEeccCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccCCceeeeecc
Confidence 9999999999999999999999877654322 2245999999999999999999999
Q ss_pred cccccc---------C------CC-----------C----------------CcccccccccccCCC------CCCCchH
Q 042735 543 IAKFLK---------P------DS-----------S----------------NWSALVGTYRYVAPD------YRKKCDV 574 (667)
Q Consensus 543 la~~~~---------~------~~-----------~----------------~~~~~~Gt~~y~aPE------~~~~~DV 574 (667)
++.-+. . +. . .+...+||+.|+||| |+.-+|+
T Consensus 775 LCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdw 854 (1034)
T KOG0608|consen 775 LCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDW 854 (1034)
T ss_pred ccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchh
Confidence 996431 0 00 0 012468999999999 6788999
Q ss_pred HHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHH-HHHhccccCCC-CCCCHHHHH
Q 042735 575 YSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME-VAFSCLDVSPE-SRPTMQTIT 652 (667)
Q Consensus 575 ~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Cl~~~p~-~RPt~~ev~ 652 (667)
||.|||||||+.|+.||...........+.++. ..++-....... .+ ..+ |...|...|-. -+--++||.
T Consensus 855 ws~gvil~em~~g~~pf~~~tp~~tq~kv~nw~--~~l~~~~~~~ls--~e----~~~li~kLc~sad~RLGkng~d~vK 926 (1034)
T KOG0608|consen 855 WSVGVILYEMLVGQPPFLADTPGETQYKVINWR--NFLHIPYQGNLS--KE----ALDLIQKLCCSADSRLGKNGADQVK 926 (1034)
T ss_pred hHhhHHHHHHhhCCCCccCCCCCcceeeeeehh--hccccccccccC--HH----HHHHHHHHhcChhhhhcccchhhhh
Confidence 999999999999999985333222222222221 222322221111 11 122 22345544321 234567899
Q ss_pred HHHHHhhhhhcc
Q 042735 653 QQLLFSLVYFSY 664 (667)
Q Consensus 653 ~~l~~~~~~~~~ 664 (667)
.|.||..+.|+.
T Consensus 927 aHpfFkgIDfss 938 (1034)
T KOG0608|consen 927 AHPFFKGIDFSS 938 (1034)
T ss_pred cCccccccchHh
Confidence 999999999875
|
|
| >cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=243.68 Aligned_cols=235 Identities=19% Similarity=0.263 Sum_probs=164.7
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC----
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR---- 494 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~---- 494 (667)
.++|...+.||+|+||.||+|.. .++..||||++..... .....+.+.+|++++++++||||+++++++....
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 91 (343)
T cd07880 14 PDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQ--SELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDR 91 (343)
T ss_pred ccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEeccccc--chHHHHHHHHHHHHHHhcCCCCccceeeeecCCccccc
Confidence 45788889999999999999975 5688899998754322 2223456889999999999999999999987643
Q ss_pred --ceEEEEEecCCCChHHHhcccc-----------------------CCcccccccCCeeecCCCceEEecccccccccC
Q 042735 495 --HSILIYEYLKRGSLATNLSNDA-----------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 495 --~~~lv~ey~~~g~L~~~l~~~~-----------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~ 549 (667)
..++||||+ +++|.+.+.... ...|.||||+||+++.++.+|++|||+++....
T Consensus 92 ~~~~~lv~e~~-~~~l~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~ 170 (343)
T cd07880 92 FHDFYLVMPFM-GTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQTDS 170 (343)
T ss_pred cceEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeccccccccc
Confidence 358999999 678876654321 112449999999999999999999999986543
Q ss_pred CCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh------hhccccC---
Q 042735 550 DSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM------RLDEMLD--- 613 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~------~~~~~~~--- 613 (667)
. .....|++.|+||| ++.++|||||||++||+++|+.||............... .....+.
T Consensus 171 ~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (343)
T cd07880 171 E---MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSED 247 (343)
T ss_pred C---ccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchh
Confidence 2 23356789999999 345799999999999999999998632211000000000 0000000
Q ss_pred -----CCCCCCCCch-----HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 614 -----PRLPPPSPDV-----QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 614 -----~~~~~~~~~~-----~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..++...... ......+.+++.+|++.+|++|||+.+++.+.||...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~~ 304 (343)
T cd07880 248 AKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALAHPYFEEF 304 (343)
T ss_pred HHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhcCccHhhh
Confidence 0000000000 0112246788899999999999999999999988754
|
Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12 |
| >cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=239.47 Aligned_cols=234 Identities=19% Similarity=0.276 Sum_probs=159.4
Q ss_pred CCcCcceeecccCeEEEEEEeC-C--CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeC----
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP-S--KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHA---- 493 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~-~--~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~---- 493 (667)
+|+..+.||+|+||.||+|+.. . +..+|+|++...... ....+.+.+|++++.+++ |||||++++++...
T Consensus 1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~--~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~ 78 (332)
T cd07857 1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSK--KILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNF 78 (332)
T ss_pred CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEecccccc--chhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccC
Confidence 3667788999999999999864 3 678999987643221 122456889999999995 99999999976432
Q ss_pred CceEEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccC
Q 042735 494 RHSILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~ 549 (667)
...++++||+. ++|.+.+.... ...|.||||+||+++.++.+||+|||+++....
T Consensus 79 ~~~~~~~e~~~-~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~ 157 (332)
T cd07857 79 NELYLYEELME-ADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFSE 157 (332)
T ss_pred CcEEEEEeccc-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCceeccc
Confidence 45788899886 57877664321 122449999999999999999999999986543
Q ss_pred CCC----CcccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCC-----------CChhhhhh-
Q 042735 550 DSS----NWSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSIL-----------PSPSVINM- 606 (667)
Q Consensus 550 ~~~----~~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~-----------~~~~~~~~- 606 (667)
... ......||+.|+|||+ +.++|||||||++|||++|+.||....... +.......
T Consensus 158 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (332)
T cd07857 158 NPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLSRI 237 (332)
T ss_pred ccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHHHHhh
Confidence 211 1234578999999993 457999999999999999999975322100 00000000
Q ss_pred ---hhccccC--CCCCCCC-C-chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 607 ---RLDEMLD--PRLPPPS-P-DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 607 ---~~~~~~~--~~~~~~~-~-~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
....... ...+... . ........+.+++.+|++.+|++|||+.|++.+.|+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~~~~~ 296 (332)
T cd07857 238 GSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALEHPYLA 296 (332)
T ss_pred hhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhh
Confidence 0000000 0000000 0 0000123567889999999999999999999998874
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co |
| >KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-27 Score=236.57 Aligned_cols=228 Identities=24% Similarity=0.358 Sum_probs=160.0
Q ss_pred CcCcceeecccCeEEEEEE-eCCCceEEEEecCCCCCC---chHHhHHHHHHHHHHHHhcCCCCeeEEEEEEE-eCCceE
Q 042735 423 FDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPS---DQIADQKEFFAEIEALTKIRHRNIVKFYGFCS-HARHSI 497 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~---~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~-~~~~~~ 497 (667)
|-....||+|+|+.||+|. +...+.||||+-.....- ......+...+|.+|...++||.||++|+|+. +.+..+
T Consensus 465 YLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFC 544 (775)
T KOG1151|consen 465 YLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFC 544 (775)
T ss_pred HHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccce
Confidence 4445679999999999995 566777899864322110 11122345779999999999999999999986 456788
Q ss_pred EEEEecCCCChHHHhccccC--------------------------CcccccccCCeeec---CCCceEEeccccccccc
Q 042735 498 LIYEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLD---LEHKAHVSDFGIAKFLK 548 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld---~~~~~kl~DFGla~~~~ 548 (667)
-|.|||+|.+|.-+|..+.. ..+.||||.|||+- ..|.+||+|||++++++
T Consensus 545 TVLEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMd 624 (775)
T KOG1151|consen 545 TVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMD 624 (775)
T ss_pred eeeeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecchhhhcc
Confidence 99999999999877654321 12349999999994 46889999999999987
Q ss_pred CCCCC-------cccccccccccCCCC----------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhh-hcc
Q 042735 549 PDSSN-------WSALVGTYRYVAPDY----------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR-LDE 610 (667)
Q Consensus 549 ~~~~~-------~~~~~Gt~~y~aPE~----------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~-~~~ 610 (667)
.+... .+...||..|++||. +.|+||||.|||+|..+.|+.||+..... ..+.... +..
T Consensus 625 ddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQ---QdILqeNTIlk 701 (775)
T KOG1151|consen 625 DDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQ---QDILQENTILK 701 (775)
T ss_pred CCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhH---HHHHhhhchhc
Confidence 65321 345789999999992 56999999999999999999999743211 1111100 000
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 611 MLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.....+|+.+ .. ..+...++.+|++..-++|....++..+.++
T Consensus 702 AtEVqFP~KP-vV---sseAkaFIRRCLaYRKeDR~DV~qLA~dpyl 744 (775)
T KOG1151|consen 702 ATEVQFPPKP-VV---SSEAKAFIRRCLAYRKEDRIDVQQLACDPYL 744 (775)
T ss_pred ceeccCCCCC-cc---CHHHHHHHHHHHHhhhhhhhhHHHHccCccc
Confidence 0111122211 11 1134467889999999999998888876554
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-29 Score=254.03 Aligned_cols=290 Identities=26% Similarity=0.374 Sum_probs=218.2
Q ss_pred CCCCCCEEEccCcccc-ccCCccccCCCCCCeeeccccccceeCCCCCccc-ccCEEEcccccccccCCccccCCCCccE
Q 042735 25 NLKSLVKLGLGGNQFR-GSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALER 102 (667)
Q Consensus 25 ~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 102 (667)
-++-.+-.|+++|.++ +..|.....++++++|.|...++. .+|..++.. .|+.|.+++|++. .+...+..++.|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 4677888999999999 689999999999999999999987 688888874 5999999999986 45567788899999
Q ss_pred EEeeCcccc-cccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCc
Q 042735 103 VIVGGNHFR-GPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNN 181 (667)
Q Consensus 103 L~l~~n~~~-~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 181 (667)
+++..|++. .-+|..+..+..|..|||+.|+++ ..|..+...+++.+|+||+|+|....-+.|-++..|-.|+||+|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 999999984 347888999999999999999997 678889999999999999999965544567799999999999999
Q ss_pred CCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeeccccc-ccccCcccccCCCCCCeeeccCCcCCccchh
Q 042735 182 ITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQ-LIGHLPSEIGSLTKLEFLNLSTNRFSSLIPE 260 (667)
Q Consensus 182 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 260 (667)
+. .+|+.+..|..|++|+|++|.+...--..+-.|++|++|.+++.+ -...+|.++..+.+|+.+|||.|.+.. +|+
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPe 239 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPE 239 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chH
Confidence 97 577789999999999999997754433444556666666666533 223466666666666666666666653 466
Q ss_pred hhhcccCCCeecCCCccCc----------------------cccchhhhcCCCCCEEECcCCCCC-CcCcccccCCcccc
Q 042735 261 SLGNLLKLHYLDLSKYQFI----------------------QELPKELGKLVQLSELELSHNFLG-REIPSQICSMECCE 317 (667)
Q Consensus 261 ~~~~l~~L~~L~ls~n~~~----------------------~~~p~~l~~l~~L~~L~l~~n~l~-~~ip~~~~~~~~~~ 317 (667)
++-++.+|+.|+||+|+++ ..+|+.+.++++|+.|...+|.+. ..||+.++.+..++
T Consensus 240 cly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred HHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 6666666666666666542 234555555555555555555443 34555555555444
Q ss_pred cc
Q 042735 318 VF 319 (667)
Q Consensus 318 ~~ 319 (667)
+|
T Consensus 320 vf 321 (1255)
T KOG0444|consen 320 VF 321 (1255)
T ss_pred HH
Confidence 44
|
|
| >KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-26 Score=221.00 Aligned_cols=235 Identities=19% Similarity=0.290 Sum_probs=172.8
Q ss_pred ceeecccCeEEEEEE-eCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceEEEEEecC
Q 042735 427 YCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
+.+|+|+|+.|--+. ..++..+|||++.+. . .-.+.+..+|++++.... |+||++++++|+++...|+|||-|.
T Consensus 84 e~LGeGAyasVqtcv~i~t~~EYAVKiidKq-~---gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~ 159 (463)
T KOG0607|consen 84 ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQ-P---GHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMR 159 (463)
T ss_pred HHhcCccceeeeeeeeeccchhhhhhhhhcC-C---chHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEeccc
Confidence 469999999998875 678899999998764 1 234567899999999886 9999999999999999999999999
Q ss_pred CCChHHHhcccc------------------------CCcccccccCCeeecCCC---ceEEecccccccccCCC------
Q 042735 505 RGSLATNLSNDA------------------------AAEELDISSKNVLLDLEH---KAHVSDFGIAKFLKPDS------ 551 (667)
Q Consensus 505 ~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~---~~kl~DFGla~~~~~~~------ 551 (667)
||.|..+++... ...|.|+||+|||-.... -+|||||.+........
T Consensus 160 GGplLshI~~~~~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spas 239 (463)
T KOG0607|consen 160 GGPLLSHIQKRKHFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPAS 239 (463)
T ss_pred CchHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCC
Confidence 999987765421 223559999999996543 48999999886543221
Q ss_pred -CCcccccccccccCCC-----------CCCCchHHHHHHHHHHHHhCCCCCCCCc-----cCCCCh-hhh-hhhhcccc
Q 042735 552 -SNWSALVGTYRYVAPD-----------YRKKCDVYSFRVLALEVIKGKHPRGFVS-----SILPSP-SVI-NMRLDEML 612 (667)
Q Consensus 552 -~~~~~~~Gt~~y~aPE-----------~~~~~DV~sfGvvl~ElltG~~p~~~~~-----~~~~~~-~~~-~~~~~~~~ 612 (667)
....+.+|+..||||| |+.++|.||+|||+|-|+.|.+||...- |-+... .+. +.....+-
T Consensus 240 tP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQ 319 (463)
T KOG0607|consen 240 TPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQ 319 (463)
T ss_pred CccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHh
Confidence 1234568999999999 7889999999999999999999985221 111100 011 11122223
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhccC
Q 042735 613 DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYA 665 (667)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~~~ 665 (667)
+....-|..++.....+..+++..-+..++.+|-++.++++++|+....-++|
T Consensus 320 EGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vlnhPw~~~~~~eka 372 (463)
T KOG0607|consen 320 EGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLNHPWVQRCAPEKA 372 (463)
T ss_pred ccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccCCccccccchhcc
Confidence 33344444444444445566777778899999999999999999876654443
|
|
| >PLN03225 Serine/threonine-protein kinase SNT7; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-26 Score=252.97 Aligned_cols=235 Identities=17% Similarity=0.181 Sum_probs=146.2
Q ss_pred HHcCCcCcceeecccCeEEEEEEeCC-----CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEE----
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELPS-----KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGF---- 489 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~~-----~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~---- 489 (667)
..++|+..+.||+|+||.||+|.... +..+|||++..... .+.+..| .+.+..|.+++.+...
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~------~e~~~~e--~l~~~~~~~~~~~~~~~~~~ 201 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA------VEIWMNE--RVRRACPNSCADFVYGFLEP 201 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch------hHHHHHH--HHHhhchhhHHHHHHhhhcc
Confidence 45789999999999999999998744 57899998754211 1111111 1222222233222211
Q ss_pred --EEeCCceEEEEEecCCCChHHHhcccc--------------------------------------------CCccccc
Q 042735 490 --CSHARHSILIYEYLKRGSLATNLSNDA--------------------------------------------AAEELDI 523 (667)
Q Consensus 490 --~~~~~~~~lv~ey~~~g~L~~~l~~~~--------------------------------------------~~~~~dl 523 (667)
+......++||||+++|+|.+++.... ...|.||
T Consensus 202 ~~~~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDL 281 (566)
T PLN03225 202 VSSKKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDV 281 (566)
T ss_pred cccccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcC
Confidence 245678999999999999987764321 1123499
Q ss_pred ccCCeeecC-CCceEEecccccccccCCC-CCcccccccccccCCC-C---------------------------CCCch
Q 042735 524 SSKNVLLDL-EHKAHVSDFGIAKFLKPDS-SNWSALVGTYRYVAPD-Y---------------------------RKKCD 573 (667)
Q Consensus 524 k~~NiLld~-~~~~kl~DFGla~~~~~~~-~~~~~~~Gt~~y~aPE-~---------------------------~~~~D 573 (667)
||+|||++. ++.+||+|||+|+.+.... .......||+.||||| | ..++|
T Consensus 282 KP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~D 361 (566)
T PLN03225 282 KPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFD 361 (566)
T ss_pred CHHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcc
Confidence 999999995 6899999999998654322 2234568999999999 2 23459
Q ss_pred HHHHHHHHHHHHhCCCCCCCCccC----CCChhhhhhhhccccCCCCCCCCCc----hHHHHHHHHHHHHhccccCCCCC
Q 042735 574 VYSFRVLALEVIKGKHPRGFVSSI----LPSPSVINMRLDEMLDPRLPPPSPD----VQGKLISIMEVAFSCLDVSPESR 645 (667)
Q Consensus 574 V~sfGvvl~ElltG~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Cl~~~p~~R 645 (667)
||||||++|||+++..|++..... ................+........ .........+++.+|++.||++|
T Consensus 362 VwSlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~kR 441 (566)
T PLN03225 362 IYSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGRQR 441 (566)
T ss_pred cHHHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccCCcccC
Confidence 999999999999987764311000 0000000000001111111000000 00001123478889999999999
Q ss_pred CCHHHHHHHHHHhhhh
Q 042735 646 PTMQTITQQLLFSLVY 661 (667)
Q Consensus 646 Pt~~ev~~~l~~~~~~ 661 (667)
||+.|+++|.||....
T Consensus 442 ~ta~e~L~Hpff~~~~ 457 (566)
T PLN03225 442 ISAKAALAHPYFDREG 457 (566)
T ss_pred CCHHHHhCCcCcCCCC
Confidence 9999999999986543
|
|
| >KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-27 Score=209.19 Aligned_cols=167 Identities=23% Similarity=0.389 Sum_probs=132.5
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHH-HhcCCCCeeEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEAL-TKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l-~~l~H~niv~~~g~~~~~~~~~l 498 (667)
++......||+|+||.|-+-++ .+|...|||++...... ..+++..+|+++. +....|.+|+|||.+.+....|+
T Consensus 46 d~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~---q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwI 122 (282)
T KOG0984|consen 46 DDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNS---QEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWI 122 (282)
T ss_pred hhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcCh---HHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEE
Confidence 3445567799999999988875 67899999999876542 3466788999875 45679999999999999999999
Q ss_pred EEEecCCCChHHHhc-----------------------------cccCCcccccccCCeeecCCCceEEecccccccccC
Q 042735 499 IYEYLKRGSLATNLS-----------------------------NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 499 v~ey~~~g~L~~~l~-----------------------------~~~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~ 549 (667)
.||.|.- ||..+.. +.-...|.|+||+|||++.+|.+|+||||++..+..
T Consensus 123 cME~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~d 201 (282)
T KOG0984|consen 123 CMELMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICDFGISGYLVD 201 (282)
T ss_pred eHHHhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEcccccceeehh
Confidence 9998863 4543221 111123459999999999999999999999998764
Q ss_pred CCCCcccccccccccCCC----------CCCCchHHHHHHHHHHHHhCCCCCC
Q 042735 550 DSSNWSALVGTYRYVAPD----------YRKKCDVYSFRVLALEVIKGKHPRG 592 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE----------~~~~~DV~sfGvvl~ElltG~~p~~ 592 (667)
.- ..+.-.|--.||||| |+-||||||+|+++.||.+++.|++
T Consensus 202 Si-Akt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~ 253 (282)
T KOG0984|consen 202 SI-AKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYE 253 (282)
T ss_pred hh-HHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhcccccc
Confidence 32 223356788999999 7789999999999999999999975
|
|
| >KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-26 Score=238.32 Aligned_cols=231 Identities=22% Similarity=0.310 Sum_probs=164.1
Q ss_pred CCcCcceeecccCeEEEEEE-eCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-C-----CCeeEEEEEEEeCC
Q 042735 422 DFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-H-----RNIVKFYGFCSHAR 494 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H-----~niv~~~g~~~~~~ 494 (667)
+|++.+.||+|.||+|-+|. ..+++.||||+++... ....+-..|+.+|..++ | -|+|+++++|...+
T Consensus 187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k-----~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~ 261 (586)
T KOG0667|consen 187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKK-----RFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRN 261 (586)
T ss_pred EEEEEEEecccccceeEEEEecCCCcEEEEEeeccCh-----HHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccccc
Confidence 67889999999999999996 5668999999987532 33445667999999887 3 58999999999999
Q ss_pred ceEEEEEecCCCChHHHhccccC--------------------------CcccccccCCeeecC--CCceEEeccccccc
Q 042735 495 HSILIYEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDL--EHKAHVSDFGIAKF 546 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~--~~~~kl~DFGla~~ 546 (667)
+.+||+|.+.. +|++++..... ..|-||||+||||-+ ...+||+|||.|..
T Consensus 262 HlciVfELL~~-NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~ 340 (586)
T KOG0667|consen 262 HLCIVFELLST-NLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCF 340 (586)
T ss_pred ceeeeehhhhh-hHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEecccccc
Confidence 99999998864 78887765421 123499999999964 34799999999987
Q ss_pred ccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCC---------------------------
Q 042735 547 LKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGF--------------------------- 593 (667)
Q Consensus 547 ~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~--------------------------- 593 (667)
..... .+.+-+..|-||| |+.+.||||||||+.||.||.+=|..
T Consensus 341 ~~q~v---ytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne~DQl~~I~e~lG~Pp~~mL~~~~~ 417 (586)
T KOG0667|consen 341 ESQRV---YTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDNEYDQLARIIEVLGLPPPKMLDTAKK 417 (586)
T ss_pred cCCcc---eeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCCHHHHHHHHHHHhCCCCHHHHHhccc
Confidence 55332 2456778999999 89999999999999999999653310
Q ss_pred ----Ccc--CCCChhhhhh------------hhcc-ccCCCCCCCCCc----hH-HHHHHHHHHHHhccccCCCCCCCHH
Q 042735 594 ----VSS--ILPSPSVINM------------RLDE-MLDPRLPPPSPD----VQ-GKLISIMEVAFSCLDVSPESRPTMQ 649 (667)
Q Consensus 594 ----~~~--~~~~~~~~~~------------~~~~-~~~~~~~~~~~~----~~-~~~~~~~~~~~~Cl~~~p~~RPt~~ 649 (667)
... ..+....... .... ..+.+.|+.... .. ..-..+++++.+|++.||.+|+|..
T Consensus 418 ~~kff~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R~tp~ 497 (586)
T KOG0667|consen 418 AHKFFTSLKGFPRLCVETSAPRGTKSPEVRKYYRKARLERRGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAERITPA 497 (586)
T ss_pred cceehhccCCceeeeeeecccccccchhhhhhhhhhcccccCCCCCcccchhcccccHHHHHHHHHHHhccCchhcCCHH
Confidence 000 0000000000 0000 011111211111 01 1224678999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 042735 650 TITQQLLFSLVY 661 (667)
Q Consensus 650 ev~~~l~~~~~~ 661 (667)
|+++|.|+....
T Consensus 498 qal~Hpfl~~~~ 509 (586)
T KOG0667|consen 498 QALNHPFLTGTS 509 (586)
T ss_pred HHhcCccccccc
Confidence 999999987443
|
|
| >KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-26 Score=218.67 Aligned_cols=239 Identities=21% Similarity=0.283 Sum_probs=165.2
Q ss_pred HHcCCcCcceeecccCeEEEEEEeC-C----CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe-
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELP-S----KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH- 492 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~-~----~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~- 492 (667)
-...|+....||+|.||.||+|... + +..+|+|+++........ .....||+.+++.++|||||.+..++..
T Consensus 22 ~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGi--S~SAcREiaL~REl~h~nvi~Lv~Vfl~~ 99 (438)
T KOG0666|consen 22 DLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGI--SMSACREIALLRELKHPNVISLVKVFLSH 99 (438)
T ss_pred HHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCc--CHHHHHHHHHHHHhcCCcchhHHHHHhcc
Confidence 3467888899999999999999532 2 236999999765432222 2457799999999999999999999887
Q ss_pred CCceEEEEEecCCCChHHHhccccCC-----------------------------cccccccCCeeecCC----CceEEe
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDAAA-----------------------------EELDISSKNVLLDLE----HKAHVS 539 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~~~-----------------------------~~~dlk~~NiLld~~----~~~kl~ 539 (667)
+...++++||.+. +|...++.+... .|.|+||+|||+..+ |.|||+
T Consensus 100 d~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIa 178 (438)
T KOG0666|consen 100 DKKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIA 178 (438)
T ss_pred CceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEee
Confidence 7789999999986 777666433221 133999999999877 999999
Q ss_pred cccccccccCCCC---CcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccC----CCChhhhh
Q 042735 540 DFGIAKFLKPDSS---NWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSI----LPSPSVIN 605 (667)
Q Consensus 540 DFGla~~~~~~~~---~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~----~~~~~~~~ 605 (667)
|||++|.....-. ....++-|..|-||| |+.+.||||.|||..||+|-++-|.....- .+.....-
T Consensus 179 DlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl 258 (438)
T KOG0666|consen 179 DLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQL 258 (438)
T ss_pred cccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHH
Confidence 9999998754322 123456799999999 899999999999999999987655321110 01110000
Q ss_pred hhhccccC----CCCCCC--CCchH------------------------HHHHHHHHHHHhccccCCCCCCCHHHHHHHH
Q 042735 606 MRLDEMLD----PRLPPP--SPDVQ------------------------GKLISIMEVAFSCLDVSPESRPTMQTITQQL 655 (667)
Q Consensus 606 ~~~~~~~~----~~~~~~--~~~~~------------------------~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l 655 (667)
.++.+++. ..+|.- .|+.. .......++....+..||-+|-|+++.+++.
T Consensus 259 ~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRIta~qAleh~ 338 (438)
T KOG0666|consen 259 DRIFEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRITAEQALEHP 338 (438)
T ss_pred HHHHHHcCCCccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhccHHHHhccc
Confidence 11111110 001000 00000 0011245677789999999999999999998
Q ss_pred HHhhh
Q 042735 656 LFSLV 660 (667)
Q Consensus 656 ~~~~~ 660 (667)
+|-..
T Consensus 339 yF~~d 343 (438)
T KOG0666|consen 339 YFTED 343 (438)
T ss_pred ccccC
Confidence 88654
|
|
| >KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-27 Score=243.78 Aligned_cols=226 Identities=26% Similarity=0.381 Sum_probs=169.9
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
-++|+....+|+|.||.||||+. ++++..|||.++-... .+.+...+|+-+++..+|||||.|+|.+...+..|+
T Consensus 14 ~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~----dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwi 89 (829)
T KOG0576|consen 14 QDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPG----DDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWI 89 (829)
T ss_pred ccchhheeeecCCcccchhhhcccccCchhhheeeeccCC----ccccccccceeeeecCCCcChHHHHhhhhhhcCcEE
Confidence 36788889999999999999975 6788999998865322 123346689999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
+||||.+|+|.+..+... ...|+|||-.|||+.+.|.+|++|||.+......-...
T Consensus 90 cMEycgggslQdiy~~TgplselqiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~gDvklaDfgvsaqitati~Kr 169 (829)
T KOG0576|consen 90 CMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDEGDVKLADFGVSAQITATIAKR 169 (829)
T ss_pred EEEecCCCcccceeeecccchhHHHHHHHhhhhccchhhhcCCcccccccccceeecccCceeecccCchhhhhhhhhhh
Confidence 999999999977543211 12356999999999999999999999998766554455
Q ss_pred ccccccccccCCC---------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 555 SALVGTYRYVAPD---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 555 ~~~~Gt~~y~aPE---------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
..+.||++||||| |.+++|||+.|+...|+..-++|-. ...+.....-+ .....+| +...+...
T Consensus 170 ksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplf---dlhpmr~l~Lm-TkS~~qp---p~lkDk~k 242 (829)
T KOG0576|consen 170 KSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLF---DLHPMRALFLM-TKSGFQP---PTLKDKTK 242 (829)
T ss_pred hcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCccc---ccchHHHHHHh-hccCCCC---CcccCCcc
Confidence 6789999999999 7889999999999999988888732 11111111100 0111111 11112223
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
....+.+++..|+-++|.+|||++.++++.+
T Consensus 243 ws~~fh~fvK~altknpKkRptaeklL~h~f 273 (829)
T KOG0576|consen 243 WSEFFHNFVKGALTKNPKKRPTAEKLLQHPF 273 (829)
T ss_pred chHHHHHHHHHHhcCCCccCCChhhheecee
Confidence 3445778888999999999999998877544
|
|
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-26 Score=237.20 Aligned_cols=214 Identities=22% Similarity=0.302 Sum_probs=160.8
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~ 497 (667)
++.|+....+|.|+|+.|.++.. .+++..+||++.+... .-.+|+.++... .||||+++.+.+.++.+.|
T Consensus 321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~--------~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~ 392 (612)
T KOG0603|consen 321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRAD--------DNQDEIPISLLVRDHPNIVKSHDVYEDGKEIY 392 (612)
T ss_pred chhhccccccCCCCccceeeeeccccccchhheecccccc--------ccccccchhhhhcCCCcceeecceecCCceee
Confidence 56677777899999999999865 5678899999876421 123567666655 5999999999999999999
Q ss_pred EEEEecCCCChHHHhcccc-----------------------CCcccccccCCeee-cCCCceEEecccccccccCCCCC
Q 042735 498 LIYEYLKRGSLATNLSNDA-----------------------AAEELDISSKNVLL-DLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~-----------------------~~~~~dlk~~NiLl-d~~~~~kl~DFGla~~~~~~~~~ 553 (667)
+|||++.+|.+.+.+.... ...+.|+||+|||+ +..+++||+|||.++.....
T Consensus 393 ~v~e~l~g~ell~ri~~~~~~~~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~--- 469 (612)
T KOG0603|consen 393 LVMELLDGGELLRRIRSKPEFCSEASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS--- 469 (612)
T ss_pred eeehhccccHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhCchh---
Confidence 9999999998866553321 12234999999999 59999999999999987654
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
..+-+=|..|.||| |++++|+|||||+||||++|+.|+.... ...... ..+..+...... .
T Consensus 470 ~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P----~~~ei~---~~i~~~~~s~~v------S 536 (612)
T KOG0603|consen 470 CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHP----AGIEIH---TRIQMPKFSECV------S 536 (612)
T ss_pred hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCC----chHHHH---HhhcCCcccccc------C
Confidence 22345678899998 8999999999999999999999975321 111111 111111111111 1
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
....+++..||+.||.+||+|.++..+.|+
T Consensus 537 ~~AKdLl~~LL~~dP~~Rl~~~~i~~h~w~ 566 (612)
T KOG0603|consen 537 DEAKDLLQQLLQVDPALRLGADEIGAHPWF 566 (612)
T ss_pred HHHHHHHHHhccCChhhCcChhhhccCcch
Confidence 234567779999999999999999999999
|
|
| >KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-26 Score=232.97 Aligned_cols=221 Identities=21% Similarity=0.302 Sum_probs=166.2
Q ss_pred cceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 426 KYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
.+++|+|.||+||-|.. ++|+.||||++.+....... ..+..+|++||.+++||.||.+-..|+..+..+.|||-+.
T Consensus 569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kq--esqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~ 646 (888)
T KOG4236|consen 569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQ--ESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLH 646 (888)
T ss_pred HhhccCCcceeeecceecccCceeeeeeeecccCCCch--HHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhc
Confidence 46799999999999975 56899999999876554332 3568899999999999999999999999999999999987
Q ss_pred CCChHHHhcccc-------------------------CCcccccccCCeeecCC---CceEEecccccccccCCCCCccc
Q 042735 505 RGSLATNLSNDA-------------------------AAEELDISSKNVLLDLE---HKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 505 ~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~---~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
|.-|.-.|.... ...|.|+||+|||+... -.+||||||+||+..+.. ...+
T Consensus 647 GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEks-FRrs 725 (888)
T KOG4236|consen 647 GDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKS-FRRS 725 (888)
T ss_pred chHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchhh-hhhh
Confidence 654544443221 11233999999999643 258999999999987543 3456
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
++|||.|+||| |...-|+||.|||+|--+.|..||....++.. ++-++....+...+.+.....
T Consensus 726 VVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdInd----------QIQNAaFMyPp~PW~eis~~A 795 (888)
T KOG4236|consen 726 VVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDIND----------QIQNAAFMYPPNPWSEISPEA 795 (888)
T ss_pred hcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccchhH----------HhhccccccCCCchhhcCHHH
Confidence 89999999999 77888999999999999999999874433211 111122211122222233345
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
++++..-++..-++|-|....+.+.|...
T Consensus 796 idlIn~LLqVkm~kRysvdk~lsh~Wlq~ 824 (888)
T KOG4236|consen 796 IDLINNLLQVKMRKRYSVDKSLSHPWLQD 824 (888)
T ss_pred HHHHHHHHHHHHHHhcchHhhccchhhhc
Confidence 67777888999999999999998887653
|
|
| >cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=222.40 Aligned_cols=197 Identities=17% Similarity=0.183 Sum_probs=144.3
Q ss_pred ccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCCCChHH
Q 042735 432 GRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLAT 510 (667)
Q Consensus 432 g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~g~L~~ 510 (667)
|.||.||+++. .+++.+|+|++.... .+.+|...+....||||+++++++.+.+..++||||+++|+|.+
T Consensus 4 g~~~~v~~~~~~~~~~~~~~K~i~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~ 74 (237)
T cd05576 4 GVIDKVLLVMDTRTQQTFILKGLRKSS---------EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWS 74 (237)
T ss_pred cccceEEEEEEccCCcEEEEEeecchh---------hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHH
Confidence 88999999976 567889999876421 23455566666779999999999999999999999999999988
Q ss_pred Hhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcccccccccccCC
Q 042735 511 NLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566 (667)
Q Consensus 511 ~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aP 566 (667)
.+.... ...|.||||+||+++.++.+|++|||.+...... .....++..|+||
T Consensus 75 ~l~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~---~~~~~~~~~y~aP 151 (237)
T cd05576 75 HISKFLNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDS---CDGEAVENMYCAP 151 (237)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEecccchhccccc---cccCCcCccccCC
Confidence 764321 1123499999999999999999999988765432 1234567789999
Q ss_pred CC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhcccc
Q 042735 567 DY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDV 640 (667)
Q Consensus 567 E~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~ 640 (667)
|+ +.++||||+||++|||++|+.|+..... .. .......++... ...+.+++.+|++.
T Consensus 152 E~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~------~~----~~~~~~~~~~~~------~~~~~~li~~~l~~ 215 (237)
T cd05576 152 EVGGISEETEACDWWSLGAILFELLTGKTLVECHPS------GI----NTHTTLNIPEWV------SEEARSLLQQLLQF 215 (237)
T ss_pred cccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCch------hc----ccccccCCcccC------CHHHHHHHHHHccC
Confidence 93 5689999999999999999987542110 00 000111122111 12456788899999
Q ss_pred CCCCCCCH-----HHHHHHHH
Q 042735 641 SPESRPTM-----QTITQQLL 656 (667)
Q Consensus 641 ~p~~RPt~-----~ev~~~l~ 656 (667)
||++||++ +|++.+.|
T Consensus 216 dp~~R~~~~~~~~~~~~~h~~ 236 (237)
T cd05576 216 NPTERLGAGVAGVEDIKSHPF 236 (237)
T ss_pred CHHHhcCCCccchHHHHcCCC
Confidence 99999996 67766654
|
Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha |
| >KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-26 Score=213.47 Aligned_cols=226 Identities=20% Similarity=0.306 Sum_probs=168.5
Q ss_pred HcCCcCc-ceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEe----
Q 042735 420 INDFDAK-YCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSH---- 492 (667)
Q Consensus 420 ~~~f~~~-~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~---- 492 (667)
++||.+. ++||-|-.|.|..+.. ++++.+|.|++.+. ....+|+++.-.. .|||||.++++|..
T Consensus 60 tedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds---------~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~ 130 (400)
T KOG0604|consen 60 TEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS---------PKARREVELHWMASGHPHIVSIIDVYENSYQG 130 (400)
T ss_pred hhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC---------HHHHhHhhhhhhhcCCCceEEeehhhhhhccC
Confidence 4555443 4699999999999865 56788999987542 2345788876555 49999999998864
Q ss_pred CCceEEEEEecCCCChHHHhccccC--------------------------CcccccccCCeeecC---CCceEEecccc
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDL---EHKAHVSDFGI 543 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~---~~~~kl~DFGl 543 (667)
.+.+.+|||.|+||+|+..++..+. ..|.||||+|+|... +-.+||+|||+
T Consensus 131 rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGF 210 (400)
T KOG0604|consen 131 RKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGF 210 (400)
T ss_pred ceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEeccccc
Confidence 3567899999999999988865421 113499999999963 55789999999
Q ss_pred cccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCC
Q 042735 544 AKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617 (667)
Q Consensus 544 a~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (667)
|+.... .....+.|-||+|+||| |+..+|+||+||++|-|+.|.+||--.......+... +.+......
T Consensus 211 AK~t~~-~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk----~rI~~gqy~ 285 (400)
T KOG0604|consen 211 AKETQE-PGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMK----RRIRTGQYE 285 (400)
T ss_pred ccccCC-CccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccCChhHH----hHhhccCcc
Confidence 997543 23455678899999999 7889999999999999999999985333221122211 222333444
Q ss_pred CCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
-+.+++........++++..+..+|++|-|.+|++.+.|-..
T Consensus 286 FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~hpwi~~ 327 (400)
T KOG0604|consen 286 FPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMDHPWINQ 327 (400)
T ss_pred CCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhcCchhcc
Confidence 455666666666778888899999999999999999988654
|
|
| >KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-25 Score=195.78 Aligned_cols=166 Identities=23% Similarity=0.398 Sum_probs=131.5
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+|+..+.||+|.||+||+|+. .+++.||.|+++-.... ........+||-+++.++|+|||++++....++..-+|+
T Consensus 3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrldddd--egvpssalreicllkelkhknivrl~dvlhsdkkltlvf 80 (292)
T KOG0662|consen 3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDD--EGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVF 80 (292)
T ss_pred chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCC--CCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeH
Confidence 455667899999999999975 56789999988643222 223356889999999999999999999999999999999
Q ss_pred EecCCCChHHHhcc-------------------------ccCCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 501 EYLKRGSLATNLSN-------------------------DAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 501 ey~~~g~L~~~l~~-------------------------~~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
|||.. +|..+... .....+.|+||+|.|+..+|+.|++|||+++...-.....+
T Consensus 81 e~cdq-dlkkyfdslng~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ngelkladfglarafgipvrcys 159 (292)
T KOG0662|consen 81 EFCDQ-DLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYS 159 (292)
T ss_pred HHhhH-HHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEecccchhhhcCCceEeee
Confidence 99973 33222211 01122459999999999999999999999998765544556
Q ss_pred cccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCC
Q 042735 556 ALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHP 590 (667)
Q Consensus 556 ~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p 590 (667)
+.+-|..|.+|+ |+...|+||-|||+.|+.....|
T Consensus 160 aevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrp 201 (292)
T KOG0662|consen 160 AEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRP 201 (292)
T ss_pred ceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCC
Confidence 667899999998 67889999999999999985555
|
|
| >PLN03224 probable serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-25 Score=235.24 Aligned_cols=236 Identities=15% Similarity=0.187 Sum_probs=152.3
Q ss_pred HcCCcCcceeecccCeEEEEEEe-----------------CCCceEEEEecCCCCCCchH----------HhHHHHHHHH
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-----------------PSKEFLAVKKFNSPLPSDQI----------ADQKEFFAEI 472 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-----------------~~~~~~avk~~~~~~~~~~~----------~~~~~~~~E~ 472 (667)
.++|+..++||+|+||.||+|.. ..++.||||++......... ...+.+..|+
T Consensus 144 ~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~ 223 (507)
T PLN03224 144 SDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEA 223 (507)
T ss_pred ccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHH
Confidence 57899999999999999999964 23457999997642211000 0112345677
Q ss_pred HHHHhcCCCCe-----eEEEEEEEe--------CCceEEEEEecCCCChHHHhcccc-----------------------
Q 042735 473 EALTKIRHRNI-----VKFYGFCSH--------ARHSILIYEYLKRGSLATNLSNDA----------------------- 516 (667)
Q Consensus 473 ~~l~~l~H~ni-----v~~~g~~~~--------~~~~~lv~ey~~~g~L~~~l~~~~----------------------- 516 (667)
..+.+++|.++ ++++|+|.. .+..++||||+++|+|.++++...
T Consensus 224 ~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~ 303 (507)
T PLN03224 224 YMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQ 303 (507)
T ss_pred HHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhccc
Confidence 78888877665 677887753 356899999999999988875311
Q ss_pred -------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC-cccccccccccCCCCC-
Q 042735 517 -------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN-WSALVGTYRYVAPDYR- 569 (667)
Q Consensus 517 -------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~-~~~~~Gt~~y~aPE~~- 569 (667)
...|.||||+||+++.++.+||+|||+++........ .....+|+.|+|||..
T Consensus 304 ~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~l~ 383 (507)
T PLN03224 304 DKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELV 383 (507)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChhhhc
Confidence 0112399999999999999999999999765432211 1123458899999931
Q ss_pred ---------------------------CCchHHHHHHHHHHHHhCCC-CCCCCccCCCC----hhhhhhh-hccccCCCC
Q 042735 570 ---------------------------KKCDVYSFRVLALEVIKGKH-PRGFVSSILPS----PSVINMR-LDEMLDPRL 616 (667)
Q Consensus 570 ---------------------------~~~DV~sfGvvl~ElltG~~-p~~~~~~~~~~----~~~~~~~-~~~~~~~~~ 616 (667)
.+.||||+||++|||++|.. |+......... ....... ........+
T Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~~~~~ 463 (507)
T PLN03224 384 MPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQKYDF 463 (507)
T ss_pred CCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhcccCCCc
Confidence 13699999999999999985 54321111000 0000000 000001111
Q ss_pred CCCCCchHHHHHHHHHHHHhccccCC---CCCCCHHHHHHHHHHhh
Q 042735 617 PPPSPDVQGKLISIMEVAFSCLDVSP---ESRPTMQTITQQLLFSL 659 (667)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~Cl~~~p---~~RPt~~ev~~~l~~~~ 659 (667)
+. .. .......+++.+++..+| .+|+|++|+++|.||.-
T Consensus 464 ~~-~d---~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~Hp~f~~ 505 (507)
T PLN03224 464 SL-LD---RNKEAGWDLACKLITKRDQANRGRLSVGQALSHRFFLP 505 (507)
T ss_pred cc-cc---ccChHHHHHHHHHhccCCCCcccCCCHHHHhCCCCcCC
Confidence 10 11 111235567778888765 68999999999999843
|
|
| >smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.1e-25 Score=217.13 Aligned_cols=212 Identities=27% Similarity=0.430 Sum_probs=157.9
Q ss_pred cCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCCCChHHH
Q 042735 433 RHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATN 511 (667)
Q Consensus 433 ~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~g~L~~~ 511 (667)
+||.||+|.... +..+|+|++........ .+.+.+|++.+++++|+||++++|++......++++||+++++|.+.
T Consensus 1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~---~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~ 77 (244)
T smart00220 1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKK---RERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDL 77 (244)
T ss_pred CceEEEEEEECCCCcEEEEEEecccccccH---HHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHH
Confidence 589999998764 88899999865432211 46799999999999999999999999999999999999999999887
Q ss_pred hccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcccccccccccCCC
Q 042735 512 LSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD 567 (667)
Q Consensus 512 l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE 567 (667)
+..... ..|.|++|+||+++.++.++++|||.+....... ......|+..|++||
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~~~~pE 156 (244)
T smart00220 78 LKKRGRLSEDEARFYARQILSALEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGG-LLTTFVGTPEYMAPE 156 (244)
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCCCcEEEccccceeeecccc-ccccccCCcCCCCHH
Confidence 754321 1133999999999999999999999998765432 223456889999999
Q ss_pred ------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccC
Q 042735 568 ------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVS 641 (667)
Q Consensus 568 ------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~ 641 (667)
++.++||||||+++||+++|+.|+..... ...... ............. ......+.+++.+||..+
T Consensus 157 ~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~---~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~i~~~l~~~ 228 (244)
T smart00220 157 VLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQ---LLELFK----KIGKPKPPFPPPE-WKISPEAKDLIRKLLVKD 228 (244)
T ss_pred HHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc---HHHHHH----HHhccCCCCcccc-ccCCHHHHHHHHHHccCC
Confidence 46799999999999999999999753211 011111 1111111111000 001235778889999999
Q ss_pred CCCCCCHHHHHHHHH
Q 042735 642 PESRPTMQTITQQLL 656 (667)
Q Consensus 642 p~~RPt~~ev~~~l~ 656 (667)
|++||++.+++++.+
T Consensus 229 p~~Rp~~~~~~~~~~ 243 (244)
T smart00220 229 PEKRLTAEEALQHPF 243 (244)
T ss_pred chhccCHHHHhhCCC
Confidence 999999999998654
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. |
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-27 Score=231.00 Aligned_cols=291 Identities=32% Similarity=0.451 Sum_probs=177.0
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeecccccccee----------------
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGS---------------- 66 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~---------------- 66 (667)
.+|+.|++++|.+.. .|.+++.+..|+.|+..+|+++ ..|+.++++.+|..|++.+|++...
T Consensus 114 ~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~ 191 (565)
T KOG0472|consen 114 ISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCN 191 (565)
T ss_pred hhhhhhhccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccc
Confidence 455666666666654 3444555666666666666665 4555555555555555555555433
Q ss_pred ------CCCCCccc-ccCEEEcccccccccCCccccCCCCccEEEeeCcccccccCcc-CCCCCCCcEEEccCCcccccc
Q 042735 67 ------IPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKC-LRNCPNLVRISLEGNNMRGTI 138 (667)
Q Consensus 67 ------~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~-l~~l~~L~~L~L~~n~~~~~~ 138 (667)
+|+.++.+ .|+-|+|..|.+. .+| .|.++..|..+.++.|++. .+|.. ..+++.|..|||..|+++ ..
T Consensus 192 ~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~ 267 (565)
T KOG0472|consen 192 SNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EV 267 (565)
T ss_pred hhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cC
Confidence 33333332 2444444444443 222 3444444444444444444 23333 336777777777777776 45
Q ss_pred chhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCC----------------------------------
Q 042735 139 SEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITR---------------------------------- 184 (667)
Q Consensus 139 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---------------------------------- 184 (667)
|+.++.+.+|.+||+|+|.++ .+|.+++++ +|+.|-+-+|.+..
T Consensus 268 Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred chHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 667777777777777777775 356666777 77777777776510
Q ss_pred ------------------------------CcCccccCC---CCcCeeeccCCccc-----------------------c
Q 042735 185 ------------------------------SIPLEIGNL---STLNEFDLSLNHIV-----------------------G 208 (667)
Q Consensus 185 ------------------------------~~p~~~~~l---~~L~~L~L~~n~l~-----------------------~ 208 (667)
.+|.+...- .-....+++.|++. +
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is 425 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS 425 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc
Confidence 000000000 00222334444432 2
Q ss_pred cCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCC-----------------------ccchhhhhcc
Q 042735 209 KIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFS-----------------------SLIPESLGNL 265 (667)
Q Consensus 209 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----------------------~~~p~~~~~l 265 (667)
.+|..+..+++|..|+|++|-+. .+|..++.+..||.||++.|+|. ...|..+.++
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 34455667788889999888776 68888888888999999888764 2234447788
Q ss_pred cCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCC
Q 042735 266 LKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLG 303 (667)
Q Consensus 266 ~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 303 (667)
.+|..||+.+|. ...+|..+++|.+|++|++++|+|.
T Consensus 505 ~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 505 RNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhcceeccCCCc-hhhCChhhccccceeEEEecCCccC
Confidence 889999998777 5678888999999999999999985
|
|
| >KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-26 Score=209.01 Aligned_cols=235 Identities=20% Similarity=0.314 Sum_probs=159.1
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe-------
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH------- 492 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~------- 492 (667)
+.|+....||+|.||.||+|+.+ .++.||+|++.-... .........+|++++..++|+|++.++..|..
T Consensus 17 ~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmene--KeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r 94 (376)
T KOG0669|consen 17 SKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENE--KEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNR 94 (376)
T ss_pred hHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhcc--ccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccc
Confidence 34556678999999999999864 466789987542111 11122356799999999999999999988753
Q ss_pred -CCceEEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEeccccccc
Q 042735 493 -ARHSILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKF 546 (667)
Q Consensus 493 -~~~~~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~ 546 (667)
....|+|+++|+. +|+-.|..... ..|.|+||.|+||+.+|.+||+|||+++.
T Consensus 95 ~r~t~ylVf~~ceh-DLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgilklADFGlar~ 173 (376)
T KOG0669|consen 95 DRATFYLVFDFCEH-DLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGILKLADFGLARA 173 (376)
T ss_pred ccceeeeeHHHhhh-hHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceEEeeccccccc
Confidence 2358999999985 67666554311 12449999999999999999999999986
Q ss_pred ccCCC----CCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCC-----------------CccCC
Q 042735 547 LKPDS----SNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGF-----------------VSSIL 598 (667)
Q Consensus 547 ~~~~~----~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~-----------------~~~~~ 598 (667)
+.... ..++..+-|..|.+|| |+.+.|||.-|||+.||+||.+-+.. ...++
T Consensus 174 fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkevW 253 (376)
T KOG0669|consen 174 FSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVW 253 (376)
T ss_pred eecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcccC
Confidence 64322 1234456699999998 78899999999999999999876431 11122
Q ss_pred CChhhhhhhhccccC-CCCCCCC-CchHHHHH------HHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 599 PSPSVINMRLDEMLD-PRLPPPS-PDVQGKLI------SIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 599 ~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~------~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
+...... +...+. +.++... ......+. ..++++...+..||.+|+.+.+++.+.||-..
T Consensus 254 P~~d~lp--L~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh~~F~kd 321 (376)
T KOG0669|consen 254 PNVDNLP--LYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNHDFFWKD 321 (376)
T ss_pred CCcccch--HHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhchhhhhcC
Confidence 2111100 000000 0011000 00011111 34567778899999999999999999998654
|
|
| >KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-24 Score=208.24 Aligned_cols=224 Identities=20% Similarity=0.287 Sum_probs=160.5
Q ss_pred HcCCcCcceeecccCeEEEEEEeCC------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe-
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPS------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH- 492 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~- 492 (667)
-.++.....+-+|.||+||+|.+++ .+.+.||.++.... .-....|..|.-.+..+.|||+..+.|++.+
T Consensus 283 r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS---~iQv~~~L~es~lly~~sH~nll~V~~V~ie~ 359 (563)
T KOG1024|consen 283 RCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHAS---QIQVNLLLQESMLLYGASHPNLLSVLGVSIED 359 (563)
T ss_pred hhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhccc---HHHHHHHHHHHHHHhcCcCCCccceeEEEeec
Confidence 3456667778999999999996543 34577777654322 1223468899999999999999999998865
Q ss_pred CCceEEEEEecCCCChHHHhc-----cccCCc---------------------------ccccccCCeeecCCCceEEec
Q 042735 493 ARHSILIYEYLKRGSLATNLS-----NDAAAE---------------------------ELDISSKNVLLDLEHKAHVSD 540 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~-----~~~~~~---------------------------~~dlk~~NiLld~~~~~kl~D 540 (667)
....+.+|.|+.-|+|..+|. +...++ |-||.++|++||+.-.+||+|
T Consensus 360 ~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd~LqVkltD 439 (563)
T KOG1024|consen 360 YATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDDQLQVKLTD 439 (563)
T ss_pred cCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehhheeEEecc
Confidence 467889999999999999887 211111 129999999999999999999
Q ss_pred ccccccccCCCC-Ccc-cccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccc
Q 042735 541 FGIAKFLKPDSS-NWS-ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEM 611 (667)
Q Consensus 541 FGla~~~~~~~~-~~~-~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~ 611 (667)
=.++|-+-+.+- ... ..-....||+|| |..++|||||||+||||+| |+.|+...+. ..... .+
T Consensus 440 saLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDP-----fEm~~---yl 511 (563)
T KOG1024|consen 440 SALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDP-----FEMEH---YL 511 (563)
T ss_pred chhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCH-----HHHHH---HH
Confidence 999996544321 111 112346899998 8899999999999999998 8999753321 11110 11
Q ss_pred cC-CCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 612 LD-PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 612 ~~-~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.| .++..|. . +.-++..+|.-||+..|++||+++|++.-|..-
T Consensus 512 kdGyRlaQP~-N---CPDeLf~vMacCWallpeeRPsf~Qlv~cLseF 555 (563)
T KOG1024|consen 512 KDGYRLAQPF-N---CPDELFTVMACCWALLPEERPSFSQLVICLSEF 555 (563)
T ss_pred hccceecCCC-C---CcHHHHHHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 12 1222221 1 122566788899999999999999999887653
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-26 Score=227.39 Aligned_cols=303 Identities=29% Similarity=0.432 Sum_probs=209.4
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEc
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLAL 81 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L 81 (667)
..++.|+.++|++.. .|..+..+.+|..|+.+.|.+. .+|++++.+..|..|+..+|+++ ++|+.+.+ ..|..|++
T Consensus 91 ~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~ 167 (565)
T KOG0472|consen 91 EALKSLNVSHNKLSE-LPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDL 167 (565)
T ss_pred HHHHHhhcccchHhh-ccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhc
Confidence 457789999999975 6888899999999999999998 78999999999999999999998 56666665 45888888
Q ss_pred ccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCcccc---------------------ccch
Q 042735 82 ENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRG---------------------TISE 140 (667)
Q Consensus 82 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~---------------------~~~~ 140 (667)
.+|++....|..+. +..|+.++...|.+. .+|+.++.|.+|..|+|..|++.. .+|.
T Consensus 168 ~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpa 245 (565)
T KOG0472|consen 168 EGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPA 245 (565)
T ss_pred cccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHH
Confidence 88887644333333 555555555555443 344455555555555555555431 2333
Q ss_pred h-hhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCccccc----------
Q 042735 141 A-FGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGK---------- 209 (667)
Q Consensus 141 ~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~---------- 209 (667)
. ...+.++.+|||.+|++ .+.|+.++.+.+|++|++++|.|++ +|.++++| .|+.|-+.+|-+..+
T Consensus 246 e~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~ 322 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQ 322 (565)
T ss_pred HHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHH
Confidence 3 34778888888888887 4678888888888888888888874 66778887 777777777654211
Q ss_pred ----------------------------CCcccc---CCcc--------------------------cceeeccccccc-
Q 042735 210 ----------------------------IPKEFG---KLNS--------------------------LTKLILRGNQLI- 231 (667)
Q Consensus 210 ----------------------------~p~~~~---~l~~--------------------------L~~L~L~~n~l~- 231 (667)
.+..|. .+.+ ....+++.|++.
T Consensus 323 ~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e 402 (565)
T KOG0472|consen 323 EVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE 402 (565)
T ss_pred HHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhh
Confidence 000000 0001 233444444432
Q ss_pred ----------------------ccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCc----------
Q 042735 232 ----------------------GHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFI---------- 279 (667)
Q Consensus 232 ----------------------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~---------- 279 (667)
+.+|..+..+++|..|+|++|.+.. +|..++.+..|+.|+++.|+|-
T Consensus 403 lPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq 481 (565)
T KOG0472|consen 403 LPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQ 481 (565)
T ss_pred hhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh-cchhhhhhhhhheecccccccccchHHHhhHH
Confidence 2445566788999999999998875 6999999999999999999751
Q ss_pred ------------cccch-hhhcCCCCCEEECcCCCCCCcCcccccCCcc
Q 042735 280 ------------QELPK-ELGKLVQLSELELSHNFLGREIPSQICSMEC 315 (667)
Q Consensus 280 ------------~~~p~-~l~~l~~L~~L~l~~n~l~~~ip~~~~~~~~ 315 (667)
+.++. .+..|.+|.+||+.+|.+ ..||..++.+..
T Consensus 482 ~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl-q~IPp~Lgnmtn 529 (565)
T KOG0472|consen 482 TLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL-QQIPPILGNMTN 529 (565)
T ss_pred HHHHHHhccccccccChHHhhhhhhcceeccCCCch-hhCChhhccccc
Confidence 22332 366777777777777776 456666655543
|
|
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-24 Score=227.60 Aligned_cols=215 Identities=24% Similarity=0.361 Sum_probs=154.1
Q ss_pred CcCcceeecccCeE-EEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceEEEE
Q 042735 423 FDAKYCIGSGRHGS-VYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 423 f~~~~~lg~g~~g~-vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~lv~ 500 (667)
|...+++|.|..|+ ||+|.+. ++.||||++... ...-..+||..++.-+ |||||++||.-.+....||..
T Consensus 511 ~~~~eilG~Gs~Gt~Vf~G~ye-~R~VAVKrll~e-------~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIal 582 (903)
T KOG1027|consen 511 FSPKEILGYGSNGTVVFRGVYE-GREVAVKRLLEE-------FFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIAL 582 (903)
T ss_pred eccHHHcccCCCCcEEEEEeeC-CceehHHHHhhH-------hHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEe
Confidence 44556688998775 7999884 568999987432 2223568999998876 999999999999999999999
Q ss_pred EecCCCChHHHhcccc----------------------------CCcccccccCCeeecC---C--CceEEecccccccc
Q 042735 501 EYLKRGSLATNLSNDA----------------------------AAEELDISSKNVLLDL---E--HKAHVSDFGIAKFL 547 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~----------------------------~~~~~dlk~~NiLld~---~--~~~kl~DFGla~~~ 547 (667)
|.|.- +|.+.+.... ...|.||||+||||+. + .+|+|+|||+++.+
T Consensus 583 ELC~~-sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl 661 (903)
T KOG1027|consen 583 ELCAC-SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKL 661 (903)
T ss_pred hHhhh-hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEeccccccccc
Confidence 99974 6766665420 0113499999999986 3 47899999999988
Q ss_pred cCCCCC---cccccccccccCCCC------CCCchHHHHHHHHHHHHhC-CCCCCCCccCCCChhhhhhhhccccCCCCC
Q 042735 548 KPDSSN---WSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKG-KHPRGFVSSILPSPSVINMRLDEMLDPRLP 617 (667)
Q Consensus 548 ~~~~~~---~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (667)
..+... .....||-+|+|||. ..++|++|+|||+|..+|| .+||+-...-. ..+. .....-...
T Consensus 662 ~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~--~NIl----~~~~~L~~L 735 (903)
T KOG1027|consen 662 AGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQ--ANIL----TGNYTLVHL 735 (903)
T ss_pred CCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhh--hhhh----cCccceeee
Confidence 766443 345679999999993 4578999999999999996 89987321100 0000 000000001
Q ss_pred CCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.+.+++ ...+++.+++..+|..||++.+|+.|++|
T Consensus 736 ~~~~d~-----eA~dLI~~ml~~dP~~RPsa~~VL~HPlF 770 (903)
T KOG1027|consen 736 EPLPDC-----EAKDLISRMLNPDPQLRPSATDVLNHPLF 770 (903)
T ss_pred ccCchH-----HHHHHHHHhcCCCcccCCCHHHHhCCCcc
Confidence 111111 34577789999999999999999998776
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=232.54 Aligned_cols=297 Identities=23% Similarity=0.248 Sum_probs=165.7
Q ss_pred CCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEccc
Q 042735 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALEN 83 (667)
Q Consensus 4 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~ 83 (667)
+|+.|++.+|.+.. .|..| .+.+|+.|+|++|++. .+|..+..+++|+.|+|++|...+.+|......+|+.|+|++
T Consensus 590 ~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 590 KLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSD 666 (1153)
T ss_pred ccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecC
Confidence 35555555555543 24433 3556666666666665 455556666666666666654434455422224566666666
Q ss_pred ccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccC
Q 042735 84 NHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIA 163 (667)
Q Consensus 84 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 163 (667)
|.....+|..+..+.+|+.|++++|..-+.+|..+ ++++|+.|+|++|......|.. ..+|+.|++++|.+. .+|
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP 741 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFP 741 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccc
Confidence 65555566666666666666666654444455443 5666666666666543333322 345666666666653 344
Q ss_pred ccCCCCCCCCEEEccCCcCC-------CCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcc
Q 042735 164 SNWGKCPKLSTLNVSMNNIT-------RSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPS 236 (667)
Q Consensus 164 ~~~~~l~~L~~L~L~~n~l~-------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 236 (667)
..+ .+++|+.|.+.++... ...+..+...++|+.|+|++|...+.+|..++++++|+.|++++|...+.+|.
T Consensus 742 ~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 742 SNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred ccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 332 3444444444432211 01111122234667777777766666777777777777777777654455665
Q ss_pred cccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCcCcccccCCc
Q 042735 237 EIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSME 314 (667)
Q Consensus 237 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~~ 314 (667)
.+ ++++|+.|++++|.....+|.. ..+|+.|++++|.+ ..+|.++..+++|+.|++++|.-...+|..+..+.
T Consensus 821 ~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i-~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~ 893 (1153)
T PLN03210 821 GI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGI-EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK 893 (1153)
T ss_pred CC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCC-ccChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence 54 5677777777766544444432 24566777776664 35676777777777777776555455655544443
|
syringae 6; Provisional |
| >cd00180 PKc Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-21 Score=186.99 Aligned_cols=181 Identities=34% Similarity=0.547 Sum_probs=147.2
Q ss_pred eecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCCCC
Q 042735 429 IGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGS 507 (667)
Q Consensus 429 lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~g~ 507 (667)
||+|++|.||++.... +..+++|++....... ..+.+.+|++.+++++|++++++++++......++++||+++++
T Consensus 1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~---~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~ 77 (215)
T cd00180 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSS---LLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGS 77 (215)
T ss_pred CCcCCceEEEEEEecCCCcEEEEEEeccccchh---HHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCc
Confidence 6899999999998754 8889999986532211 24579999999999999999999999999999999999999999
Q ss_pred hHHHhccc--cCC-----------------------cccccccCCeeecC-CCceEEecccccccccCCCCCcccccccc
Q 042735 508 LATNLSND--AAA-----------------------EELDISSKNVLLDL-EHKAHVSDFGIAKFLKPDSSNWSALVGTY 561 (667)
Q Consensus 508 L~~~l~~~--~~~-----------------------~~~dlk~~NiLld~-~~~~kl~DFGla~~~~~~~~~~~~~~Gt~ 561 (667)
|.+++... ... .|.|++|.||+++. ++.++|+|||.+..............+..
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 157 (215)
T cd00180 78 LKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTP 157 (215)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhhcccCCC
Confidence 99887643 111 12399999999999 89999999999987654322223356788
Q ss_pred cccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHH
Q 042735 562 RYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634 (667)
Q Consensus 562 ~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (667)
.|++||. +.++|+|++|++++|+ ..+.+++
T Consensus 158 ~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l-------------------------------------------~~~~~~l 194 (215)
T cd00180 158 AYMAPEVLLGKGYYSEKSDIWSLGVILYEL-------------------------------------------PELKDLI 194 (215)
T ss_pred CccChhHhcccCCCCchhhhHHHHHHHHHH-------------------------------------------HHHHHHH
Confidence 9999983 3579999999999998 2456778
Q ss_pred HhccccCCCCCCCHHHHHHHH
Q 042735 635 FSCLDVSPESRPTMQTITQQL 655 (667)
Q Consensus 635 ~~Cl~~~p~~RPt~~ev~~~l 655 (667)
..|++.+|++||+++++++++
T Consensus 195 ~~~l~~~p~~R~~~~~l~~~~ 215 (215)
T cd00180 195 RKMLQKDPEKRPSAKEILEHL 215 (215)
T ss_pred HHHhhCCcccCcCHHHHhhCC
Confidence 899999999999999998753
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which |
| >KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.8e-23 Score=185.97 Aligned_cols=234 Identities=20% Similarity=0.332 Sum_probs=165.9
Q ss_pred HcCCcCcceeecccCeEEEEEE-eCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCC--c
Q 042735 420 INDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHAR--H 495 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~--~ 495 (667)
+++|+..+.+|+|.|+.||.|. ..+.+.++||.++.. ..+.+.+|+.++..++ |||||++++...++. .
T Consensus 37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPV-------kkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~Skt 109 (338)
T KOG0668|consen 37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPV-------KKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKT 109 (338)
T ss_pred cchHHHHHHHcCccHhhHhcccccCCCceEEEeeechH-------HHHHHHHHHHHHHhccCCCCeeehhhhhcCccccC
Confidence 4677777889999999999996 466778999987642 2456889999999999 999999999998764 5
Q ss_pred eEEEEEecCCCChHHHhcc---------------------ccCCcccccccCCeeecC-CCceEEecccccccccCCCCC
Q 042735 496 SILIYEYLKRGSLATNLSN---------------------DAAAEELDISSKNVLLDL-EHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~---------------------~~~~~~~dlk~~NiLld~-~~~~kl~DFGla~~~~~~~~~ 553 (667)
..+|+||+.+-+....... .....|.|+||.|+++|. .-..++.|.|+|.+..+...
T Consensus 110 paLiFE~v~n~Dfk~ly~tl~d~dIryY~~elLkALdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~e- 188 (338)
T KOG0668|consen 110 PSLIFEYVNNTDFKQLYPTLTDYDIRYYIYELLKALDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKE- 188 (338)
T ss_pred chhHhhhhccccHHHHhhhhchhhHHHHHHHHHHHHhHHHhcCcccccCCcceeeechhhceeeeeecchHhhcCCCce-
Confidence 6799999999886543221 123346699999999994 56799999999998876543
Q ss_pred cccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccC----------CCChhhhh--hhhccccCC
Q 042735 554 WSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSI----------LPSPSVIN--MRLDEMLDP 614 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~----------~~~~~~~~--~~~~~~~~~ 614 (667)
....+.+..|--|| |+..-|+|||||++.+|+..+.||-..... ........ ....-.+||
T Consensus 189 YnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp 268 (338)
T KOG0668|consen 189 YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDP 268 (338)
T ss_pred eeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCCh
Confidence 44556677888898 678899999999999999999997421110 00000000 000001121
Q ss_pred CCCC--------C-----CCchHHH-HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 615 RLPP--------P-----SPDVQGK-LISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 615 ~~~~--------~-----~~~~~~~-~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.... + .++.... ..+.++++..-+..|-.+|||+.|.+.+.+|..+.
T Consensus 269 ~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~HpyF~~~~ 329 (338)
T KOG0668|consen 269 QFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMAHPYFAPVR 329 (338)
T ss_pred hHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHhcCchHHHHH
Confidence 1100 0 0010111 13566777788999999999999999999997654
|
|
| >KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-22 Score=199.37 Aligned_cols=231 Identities=24% Similarity=0.353 Sum_probs=161.9
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCC--C----CeeEEEEEEEe
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH--R----NIVKFYGFCSH 492 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H--~----niv~~~g~~~~ 492 (667)
..+|.+...+|+|.||.|-++-. ..+..||||+++.. .+..+..+-|++++.++.+ | -+|++.+||..
T Consensus 88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V-----~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdy 162 (415)
T KOG0671|consen 88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNV-----DKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDY 162 (415)
T ss_pred ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHH-----HHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhc
Confidence 46788888999999999999853 45789999998653 2344567789999999942 2 27888889999
Q ss_pred CCceEEEEEecCCCChHHHhccccCC--------------------------cccccccCCeeecC--------------
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDAAA--------------------------EELDISSKNVLLDL-------------- 532 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~~~--------------------------~~~dlk~~NiLld~-------------- 532 (667)
.++.++|+|.+ |-|+.+++...... .|.||||+|||+-+
T Consensus 163 rghiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~ 241 (415)
T KOG0671|consen 163 RGHICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVC 241 (415)
T ss_pred cCceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEeccCCccc
Confidence 99999999976 34788887653211 13399999999832
Q ss_pred ------CCceEEecccccccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCcc----
Q 042735 533 ------EHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSS---- 596 (667)
Q Consensus 533 ------~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~---- 596 (667)
+..+||.|||-|....+. .++++.|..|-||| +...+||||+||||+|+.||..-|.....
T Consensus 242 ~~r~~ks~~I~vIDFGsAtf~~e~---hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHL 318 (415)
T KOG0671|consen 242 FIRPLKSTAIKVIDFGSATFDHEH---HSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHL 318 (415)
T ss_pred eeccCCCcceEEEecCCcceeccC---cceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHH
Confidence 335889999999875443 35678999999999 57899999999999999999875532110
Q ss_pred -----C-CCChh--hhhhhhcc-----ccCC-----------CCCCCCC------chHHHHHHHHHHHHhccccCCCCCC
Q 042735 597 -----I-LPSPS--VINMRLDE-----MLDP-----------RLPPPSP------DVQGKLISIMEVAFSCLDVSPESRP 646 (667)
Q Consensus 597 -----~-~~~~~--~~~~~~~~-----~~~~-----------~~~~~~~------~~~~~~~~~~~~~~~Cl~~~p~~RP 646 (667)
+ .+.+. +.....+. -+|. ...++.+ ....+..++.+++.+.+..||.+|+
T Consensus 319 aMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~Ri 398 (415)
T KOG0671|consen 319 AMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRI 398 (415)
T ss_pred HHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccc
Confidence 0 01110 00000000 0110 0000000 1123455788999999999999999
Q ss_pred CHHHHHHHHHHhh
Q 042735 647 TMQTITQQLLFSL 659 (667)
Q Consensus 647 t~~ev~~~l~~~~ 659 (667)
|+.|++++.||..
T Consensus 399 Tl~EAL~HpFF~~ 411 (415)
T KOG0671|consen 399 TLREALSHPFFAR 411 (415)
T ss_pred cHHHHhcCHHhhc
Confidence 9999999999864
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-21 Score=215.00 Aligned_cols=265 Identities=25% Similarity=0.274 Sum_probs=209.4
Q ss_pred CCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEccc
Q 042735 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALEN 83 (667)
Q Consensus 4 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~ 83 (667)
+-..|+|++|.|+. +|..+. ++|+.|++.+|+|+. +|. .+++|++|+|++|+|+ .+|... .+|+.|+|++
T Consensus 202 ~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~lp--~sL~~L~Ls~ 271 (788)
T PRK15387 202 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVLP--PGLLELSIFS 271 (788)
T ss_pred CCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCcc--cccceeeccC
Confidence 35679999999986 566654 589999999999984 665 2689999999999998 456532 4699999999
Q ss_pred ccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccC
Q 042735 84 NHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIA 163 (667)
Q Consensus 84 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 163 (667)
|.++. +|..+ .+|+.|++++|+++. +|. ..++|+.|+|++|++++. |.. ..+|+.|++++|.+.+ +|
T Consensus 272 N~L~~-Lp~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 272 NPLTH-LPALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred Cchhh-hhhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC---cccccccccccCcccc-cc
Confidence 99874 34322 578899999999985 454 357899999999999864 432 3468899999999864 55
Q ss_pred ccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCC
Q 042735 164 SNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTK 243 (667)
Q Consensus 164 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 243 (667)
.. ..+|+.|+|++|++++ +|.. .++|+.|++++|++.. +|.. ..+|+.|++++|.+.+ +|.. .++
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~ 403 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSE 403 (788)
T ss_pred cc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccC
Confidence 42 2589999999999985 5543 3578889999999985 5643 3579999999999985 5543 368
Q ss_pred CCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCcCccccc
Q 042735 244 LEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQIC 311 (667)
Q Consensus 244 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ip~~~~ 311 (667)
|+.|++++|++++ +|... .+|+.|++++|++. .+|..++.+++|+.|++++|++++.+|..+.
T Consensus 404 L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 404 LKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred CCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 9999999999987 56543 46788999999965 7999999999999999999999988776553
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-21 Score=226.69 Aligned_cols=277 Identities=21% Similarity=0.222 Sum_probs=159.3
Q ss_pred CCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcccccccccCCccccCCCCccEEEee
Q 042735 28 SLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERVIVG 106 (667)
Q Consensus 28 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 106 (667)
+|+.|++.+|.+. .+|..| .+.+|+.|+|.+|++. .+|..+.. .+|+.|+|++|.....+| .+..+++|+.|+++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec
Confidence 3555555555443 344444 2445555555555543 23333332 235555555443333333 24444555555555
Q ss_pred CcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCc
Q 042735 107 GNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSI 186 (667)
Q Consensus 107 ~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 186 (667)
+|.....+|..+.++++|+.|++++|.....+|..+ .+++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~l 740 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EF 740 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cc
Confidence 544444445555555555555555543323333322 4455555555555433333321 234555555555543 23
Q ss_pred CccccCCCCcCeeeccCCccc-------ccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccch
Q 042735 187 PLEIGNLSTLNEFDLSLNHIV-------GKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIP 259 (667)
Q Consensus 187 p~~~~~l~~L~~L~L~~n~l~-------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 259 (667)
|..+ .+++|+.|++..+... ...+..+...++|+.|+|++|...+.+|..++++++|+.|++++|...+.+|
T Consensus 741 P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 741 PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred cccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 3322 3455555555442211 0111112234689999999998888899999999999999999986555677
Q ss_pred hhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCcCcccccCCcccccc
Q 042735 260 ESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEVF 319 (667)
Q Consensus 260 ~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~~~~ 319 (667)
..+ ++++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|..+..+..+..+
T Consensus 820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L 874 (1153)
T PLN03210 820 TGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFL 874 (1153)
T ss_pred CCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEE
Confidence 766 7899999999999877777753 468999999999985 688877776665544
|
syringae 6; Provisional |
| >smart00221 STYKc Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-20 Score=184.16 Aligned_cols=167 Identities=30% Similarity=0.529 Sum_probs=137.0
Q ss_pred CcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
|+..+.||+|++|.||+|.... +..+|+|.+...... ...+.+.+|++.+.+++|+|++++++++......++++|
T Consensus 1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~---~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e 77 (225)
T smart00221 1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTE---KQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVME 77 (225)
T ss_pred CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccch---HHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEe
Confidence 4566789999999999998765 788999998654321 235678999999999999999999999999999999999
Q ss_pred ecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCC-CCcc
Q 042735 502 YLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS-SNWS 555 (667)
Q Consensus 502 y~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~-~~~~ 555 (667)
|+++++|.+++..... ..+.|++++||+++.++.++|+|||.+....... ....
T Consensus 78 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~ 157 (225)
T smart00221 78 YCEGGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALLK 157 (225)
T ss_pred ccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCccccccc
Confidence 9999999888754321 1123999999999999999999999998765432 1223
Q ss_pred cccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCC
Q 042735 556 ALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRG 592 (667)
Q Consensus 556 ~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~ 592 (667)
...|+..|++||. +.++|||+||++++||++|+.||.
T Consensus 158 ~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~ 201 (225)
T smart00221 158 TVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFS 201 (225)
T ss_pred ceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCcc
Confidence 4568889999994 358999999999999999999985
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-20 Score=205.86 Aligned_cols=247 Identities=26% Similarity=0.331 Sum_probs=196.0
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcc
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALE 82 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~ 82 (667)
++|+.|++++|+|+.+ |. .+++|++|+|++|+|+. +|.. .++|+.|+|++|.++ .+|..+ ..|+.|+|+
T Consensus 222 ~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~-~Lp~lp--~~L~~L~Ls 290 (788)
T PRK15387 222 AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT-HLPALP--SGLCKLWIF 290 (788)
T ss_pred cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh-hhhhch--hhcCEEECc
Confidence 3689999999999974 54 36899999999999994 5643 578999999999987 455533 358899999
Q ss_pred cccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCcc
Q 042735 83 NNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEI 162 (667)
Q Consensus 83 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 162 (667)
+|+++. +|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|.+++ +|. ...+|+.|+|++|++.+ +
T Consensus 291 ~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~Ls~-L 357 (788)
T PRK15387 291 GNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT---LPSGLQELSVSDNQLAS-L 357 (788)
T ss_pred CCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc---cccccceEecCCCccCC-C
Confidence 999984 4432 3689999999999986 3432 2468889999999985 443 22589999999999975 5
Q ss_pred CccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCC
Q 042735 163 ASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLT 242 (667)
Q Consensus 163 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 242 (667)
|.. ..+|+.|++++|.+.. +|.. ..+|+.|+|++|.+.+ +|.. ..+|+.|++++|++.+ +|.. ..
T Consensus 358 P~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~ 422 (788)
T PRK15387 358 PTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PS 422 (788)
T ss_pred CCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hh
Confidence 543 3578889999999985 5543 3579999999999985 5543 3679999999999985 6653 35
Q ss_pred CCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcC
Q 042735 243 KLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKL 289 (667)
Q Consensus 243 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l 289 (667)
+|+.|++++|+++. +|..+.++++|+.|++++|++.+..|..+..+
T Consensus 423 ~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 423 GLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred hhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 78899999999985 79999999999999999999998888877444
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8e-23 Score=200.69 Aligned_cols=287 Identities=21% Similarity=0.191 Sum_probs=199.8
Q ss_pred CCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccc-cccceeCCCCCccc-ccCEEEc
Q 042735 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE-NNLSGSIPPSVGNL-MLTVLAL 81 (667)
Q Consensus 4 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~~-~L~~L~L 81 (667)
...+|.|..|+|+.++|.+|+.+++|++|||++|+|+.+-|++|.+|.+|..|-+.+ |+|+...-..|+.+ .|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456788999999998888999999999999999999988999999999887777766 88875444556664 4888888
Q ss_pred ccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCc
Q 042735 82 ENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGE 161 (667)
Q Consensus 82 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 161 (667)
.-|++.......+..+.++..|.+..|.+..+-...+..+..++.+.+..|.+-. .. +|+.|.= +...
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dC---nL~wla~----~~a~ 215 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DC---NLPWLAD----DLAM 215 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----cc---ccchhhh----HHhh
Confidence 8888887777777777888888888887775555577777788888777776321 11 1222100 1122
Q ss_pred cCccCCCCCCCCEEEccCCcCCCCcCccccC-CCCcCeeeccCCcccccCCc-cccCCcccceeecccccccccCccccc
Q 042735 162 IASNWGKCPKLSTLNVSMNNITRSIPLEIGN-LSTLNEFDLSLNHIVGKIPK-EFGKLNSLTKLILRGNQLIGHLPSEIG 239 (667)
Q Consensus 162 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~ 239 (667)
.|..+++.....-..+.++++....+..|.. +..+..-..+.+...+..|. .|..|++|++|+|++|+++++-+.+|.
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 3444455555555555555554433333321 11222212222333334443 477888888888888888877777888
Q ss_pred CCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCC
Q 042735 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFL 302 (667)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l 302 (667)
++..+++|.|..|++.......|.++..|+.|+|.+|+++...|..|..+.+|.+|++-.|++
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 888888888888888776667778888888888888888888888888888888888887766
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.9e-22 Score=213.53 Aligned_cols=282 Identities=29% Similarity=0.302 Sum_probs=183.1
Q ss_pred EeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEccccccc
Q 042735 8 LHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFT 87 (667)
Q Consensus 8 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~ 87 (667)
|+|++|.+. . ....++.+|++|....|++... -...++|+.|+.++|.++. +-..+...+|++++++.|+++
T Consensus 183 ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~-~~~~p~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 183 LDLRYNEME-V--LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTT-LDVHPVPLNLQYLDISHNNLS 254 (1081)
T ss_pred eecccchhh-h--hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCccee-eccccccccceeeecchhhhh
Confidence 777777765 1 2345677777777777776532 2245678888888887763 333344456899999999988
Q ss_pred ccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCC
Q 042735 88 GNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWG 167 (667)
Q Consensus 88 ~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 167 (667)
+ +|.+++.+.+|+.+.+..|++. .+|..+..+.+|+.|....|.+. .+|.....+++|++|+|..|.+....+..+.
T Consensus 255 ~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~ 331 (1081)
T KOG0618|consen 255 N-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLA 331 (1081)
T ss_pred c-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHh
Confidence 4 4588999999999999999885 56777777888888888888886 5666677788888888888887543332233
Q ss_pred CCCC-CCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCe
Q 042735 168 KCPK-LSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEF 246 (667)
Q Consensus 168 ~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 246 (667)
.+.. |+.|+.+.|++....-..=..++.|+.|++.+|++++.+-+.+.++++|+.|+|++|++.......+.++..|+.
T Consensus 332 v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Lee 411 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEE 411 (1081)
T ss_pred hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHH
Confidence 3332 555555555554322222233456666666666666666556666666666666666665333345566666666
Q ss_pred eeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCC
Q 042735 247 LNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLG 303 (667)
Q Consensus 247 L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 303 (667)
|+||+|+++. +|+++.++..|++|....|++ ..+| ++..++.|+.+|++.|+++
T Consensus 412 L~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l-~~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 412 LNLSGNKLTT-LPDTVANLGRLHTLRAHSNQL-LSFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred Hhcccchhhh-hhHHHHhhhhhHHHhhcCCce-eech-hhhhcCcceEEecccchhh
Confidence 6666666654 456666666666666655553 3455 5556666666666666654
|
|
| >KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-20 Score=177.14 Aligned_cols=225 Identities=20% Similarity=0.293 Sum_probs=151.1
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEE-EEEeCCce
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYG-FCSHARHS 496 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g-~~~~~~~~ 496 (667)
.+.|++.+.+|+|.||.+-.++++ +.+.+++|.+..+.. .+++|.+|...--.+. |.|||.-|+ .|...+..
T Consensus 23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~t-----t~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~Y 97 (378)
T KOG1345|consen 23 EDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQT-----TQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAY 97 (378)
T ss_pred hhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchh-----hHHHHHHHhccceeeccchhhhHHHHHHhhcCceE
Confidence 356788889999999999999875 467788898776532 3567999988766665 999998886 45667788
Q ss_pred EEEEEecCCCChHHHhccccC-----------------------CcccccccCCeeec--CCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLD--LEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld--~~~~~kl~DFGla~~~~~~~ 551 (667)
+.++||++.|+|...+..... ..|.|||.+|||+- +..++|+||||..+.....-
T Consensus 98 vF~qE~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV 177 (378)
T KOG1345|consen 98 VFVQEFAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTV 177 (378)
T ss_pred EEeeccCccchhhhhcCcccccHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEecCCccEEEeeecccccccCcee
Confidence 899999999999876654322 12459999999993 44589999999997643221
Q ss_pred CCcccccccccccCCC-----------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCC
Q 042735 552 SNWSALVGTYRYVAPD-----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE-----------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (667)
...--+..|-||| ....+|||.|||++|-++||+.||.. .++...+-...+....-..++.|...
T Consensus 178 ---~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQk-a~~~d~~Y~~~~~w~~rk~~~~P~~F 253 (378)
T KOG1345|consen 178 ---KYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQK-ASIMDKPYWEWEQWLKRKNPALPKKF 253 (378)
T ss_pred ---hhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchh-hhccCchHHHHHHHhcccCccCchhh
Confidence 1223455688887 25678999999999999999999873 22222221111111122223333222
Q ss_pred CchHHHHHHHHHHHHhccccCCCCC---CCHHHHHHHHH
Q 042735 621 PDVQGKLISIMEVAFSCLDVSPESR---PTMQTITQQLL 656 (667)
Q Consensus 621 ~~~~~~~~~~~~~~~~Cl~~~p~~R---Pt~~ev~~~l~ 656 (667)
... ....+++..+-+..+|++| .++......+|
T Consensus 254 ~~f---s~~a~r~Fkk~lt~~~~drcki~~~kk~rk~~w 289 (378)
T KOG1345|consen 254 NPF---SEKALRLFKKSLTPRFKDRCKIWTAKKMRKCLW 289 (378)
T ss_pred ccc---CHHHHHHHHHhcCCcccccchhHHHHHHHHHHH
Confidence 111 1234555567788888888 44444444444
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8e-20 Score=204.85 Aligned_cols=202 Identities=26% Similarity=0.381 Sum_probs=105.5
Q ss_pred CCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEccc
Q 042735 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALEN 83 (667)
Q Consensus 4 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~ 83 (667)
+...|+++++.++. +|..+ .++|+.|+|++|+|+ .+|..+. ++|++|+|++|+++ .+|..+. .+|+.|+|++
T Consensus 179 ~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~-~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP-DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh-ccccEEECcC
Confidence 45678888887775 35443 256888888888887 4565553 47888888888776 4555432 2477777777
Q ss_pred ccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccC
Q 042735 84 NHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIA 163 (667)
Q Consensus 84 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 163 (667)
|.+. .+|..+. .+|+.|++++|+++. +|..+. ++|+.|+|++|++++. |..+. .+|+.|++++|.+.. +|
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccC-cccch--hhHHHHHhcCCcccc-CC
Confidence 7765 3444432 355666666665552 343332 3555555555555532 22111 244555555555432 23
Q ss_pred ccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeeccccccc
Q 042735 164 SNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLI 231 (667)
Q Consensus 164 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 231 (667)
..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|.+. .+|..+ .++|+.|++++|.++
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence 221 1344555555554443 332221 34444444444443 223222 134444444444443
|
|
| >KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-20 Score=179.84 Aligned_cols=231 Identities=22% Similarity=0.333 Sum_probs=153.6
Q ss_pred CcCcceeecccCeEEEEE-EeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC------Cc
Q 042735 423 FDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA------RH 495 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~-~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~------~~ 495 (667)
|.....+|.|.- .|..| ..-.+++||+|+...+... ....++..+|..++..+.|+||++++.++... .+
T Consensus 19 y~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n--~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e 95 (369)
T KOG0665|consen 19 YVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQN--QTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQE 95 (369)
T ss_pred eeeecccCCCCc-eEEecchhhccCceehhhhcCcccc--CccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHh
Confidence 333445666655 34444 2345788999998766322 23456778999999999999999999998653 46
Q ss_pred eEEEEEecCCCChHHHhcc----------------------ccCCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 496 SILIYEYLKRGSLATNLSN----------------------DAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~----------------------~~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
.|+|||||.. +|...+.. .....+.||||+||++..+..+||.|||+|+....+ -.
T Consensus 96 ~y~v~e~m~~-nl~~vi~~elDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~-~~ 173 (369)
T KOG0665|consen 96 VYLVMELMDA-NLCQVILMELDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTD-FM 173 (369)
T ss_pred HHHHHHhhhh-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecchhheeeccchhhcccCcc-cc
Confidence 7999999974 55443321 112335699999999999999999999999875544 23
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccC---------C--CChhhh--------h---
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSI---------L--PSPSVI--------N--- 605 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~---------~--~~~~~~--------~--- 605 (667)
.+-.+.|..|-||| |.+.+||||.||++.||++|+.-|.....+ . +.+.-. .
T Consensus 174 mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~ 253 (369)
T KOG0665|consen 174 MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVE 253 (369)
T ss_pred cCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhh
Confidence 45678899999999 678899999999999999997543211000 0 000000 0
Q ss_pred -------hhhcccc-CCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 606 -------MRLDEML-DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 606 -------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
....+.+ |..++.......-......+++.++|..+|++|-+++++++|.++.
T Consensus 254 ~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~HPY~~ 314 (369)
T KOG0665|consen 254 NRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRHPYIK 314 (369)
T ss_pred cChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhcCCeee
Confidence 0000000 1111111111111122345778899999999999999999999886
|
|
| >KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-21 Score=179.71 Aligned_cols=233 Identities=24% Similarity=0.340 Sum_probs=158.2
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC-----Cc
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA-----RH 495 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~-----~~ 495 (667)
|.+..+.||-|+||.||-+.. ++|+.||.|++..... ....-+.+.+|++.+..++|.|+...++..... .+
T Consensus 54 Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq--~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqE 131 (449)
T KOG0664|consen 54 DIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQ--NLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQE 131 (449)
T ss_pred cCCCCCcccccceeEEEeccCCCCccchhHhhcchHHH--HHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHH
Confidence 344567899999999999975 6789999999865322 233457899999999999999999998877543 35
Q ss_pred eEEEEEecCCCChHHHhccc------------------------cCCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 496 SILIYEYLKRGSLATNLSND------------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~------------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
+|.+.|.|.. +|.+.+-.. +...+.||||.|.|+..+...||||||+||..+.+.
T Consensus 132 iYV~TELmQS-DLHKIIVSPQ~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~ 210 (449)
T KOG0664|consen 132 LYVLTELMQS-DLHKIIVSPQALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLARTWDQRD 210 (449)
T ss_pred HHHHHHHHHh-hhhheeccCCCCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCceEEecccccccccchhh
Confidence 6777787763 555443221 112345999999999999999999999999866554
Q ss_pred C-CcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccC---------CCChhhhhhh------h
Q 042735 552 S-NWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSI---------LPSPSVINMR------L 608 (667)
Q Consensus 552 ~-~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~---------~~~~~~~~~~------~ 608 (667)
. .++..+-|-+|.||| |+.+.||||.|||+.|++.++.-|.....+ ...+..+.++ .
T Consensus 211 ~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACEGAk 290 (449)
T KOG0664|consen 211 RLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACEGAK 290 (449)
T ss_pred hhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhhhhH
Confidence 3 345566788999999 788999999999999999887554321111 1111111111 0
Q ss_pred ccccCCCCCCCC--------CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 609 DEMLDPRLPPPS--------PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 609 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
..++.....++. ... ..-.+...+....+..||++|-+.++.+.+++..
T Consensus 291 ~H~LR~~~k~Ps~~vLYtlsS~~-~~~heav~~~~~~l~~d~dkris~~~A~~~~~~~ 347 (449)
T KOG0664|consen 291 NHVLRAGLRAPDTQRLYKIASPD-DKNHEAVDLLQKLLHFDPDKRISVEEALQHRYLE 347 (449)
T ss_pred HHhhccCCCCCCccceeeecCCc-ccchHHHHHHHHHhCCCCcccccHhhhccccccc
Confidence 111211111110 000 0111233455567899999999999998887654
|
|
| >KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-20 Score=188.15 Aligned_cols=172 Identities=23% Similarity=0.333 Sum_probs=134.1
Q ss_pred HHHcCCcCcceeecccCeEEEEEEeCCC-ceEEEEecCCCCCCch--HHh--HHHHHHHHHHHHhcC---CCCeeEEEEE
Q 042735 418 RAINDFDAKYCIGSGRHGSVYRAELPSK-EFLAVKKFNSPLPSDQ--IAD--QKEFFAEIEALTKIR---HRNIVKFYGF 489 (667)
Q Consensus 418 ~~~~~f~~~~~lg~g~~g~vy~~~~~~~-~~~avk~~~~~~~~~~--~~~--~~~~~~E~~~l~~l~---H~niv~~~g~ 489 (667)
....+|...+.+|+|+||.|+.|.++.+ ..|+||.+.+..-..+ .++ ....-.||+||+.++ |+||++++++
T Consensus 558 ~k~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdf 637 (772)
T KOG1152|consen 558 KKFSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDF 637 (772)
T ss_pred cccccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhhe
Confidence 3456788899999999999999987654 5677887655322111 111 123457999999998 9999999999
Q ss_pred EEeCCceEEEEEec-CCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEeccccc
Q 042735 490 CSHARHSILIYEYL-KRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIA 544 (667)
Q Consensus 490 ~~~~~~~~lv~ey~-~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla 544 (667)
|++++..||+||-- ++-+|++++..+. ...|+|||-+||++|.+|-+||.|||-|
T Consensus 638 FEddd~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~g~~klidfgsa 717 (772)
T KOG1152|consen 638 FEDDDYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSNGFVKLIDFGSA 717 (772)
T ss_pred eecCCeeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhccccccccCceecccccccEEEecCCeEEEeeccch
Confidence 99999999999964 3447777664321 1224599999999999999999999999
Q ss_pred ccccCCCCCcccccccccccCCC------C-CCCchHHHHHHHHHHHHhCCCCC
Q 042735 545 KFLKPDSSNWSALVGTYRYVAPD------Y-RKKCDVYSFRVLALEVIKGKHPR 591 (667)
Q Consensus 545 ~~~~~~~~~~~~~~Gt~~y~aPE------~-~~~~DV~sfGvvl~ElltG~~p~ 591 (667)
...+... ..+++||.+|.||| | ...-|||++||+||.++..+.||
T Consensus 718 a~~ksgp--fd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpy 769 (772)
T KOG1152|consen 718 AYTKSGP--FDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPY 769 (772)
T ss_pred hhhcCCC--cceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCC
Confidence 8766443 45789999999999 3 34679999999999999988886
|
|
| >smart00750 KIND kinase non-catalytic C-lobe domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-19 Score=168.64 Aligned_cols=125 Identities=18% Similarity=0.286 Sum_probs=88.1
Q ss_pred ccCCeeecCCCceEEecccccccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccC
Q 042735 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSI 597 (667)
Q Consensus 524 k~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~ 597 (667)
||+|||++.++.+|+ ||+++...... ..||+.||||| |+.++|||||||++|||+||+.||......
T Consensus 38 kp~Nil~~~~~~~~~--fG~~~~~~~~~-----~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~ 110 (176)
T smart00750 38 KSGNILLTWDGLLKL--DGSVAFKTPEQ-----SRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEEREL 110 (176)
T ss_pred CcccEeEcCccceee--ccceEeecccc-----CCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchh
Confidence 999999999999999 99998764322 36899999999 578999999999999999999997532211
Q ss_pred CCChhhhhhhhccccCCCCCCCCCchHHHH--HHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 598 LPSPSVINMRLDEMLDPRLPPPSPDVQGKL--ISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
. .......... .+..+.......... ..+.+++.+||+.+|++|||+.|++++++...
T Consensus 111 ~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~ 170 (176)
T smart00750 111 S---AILEILLNGM-PADDPRDRSNLESVSAARSFADFMRVCASRLPQRREAANHYLAHCRALF 170 (176)
T ss_pred c---HHHHHHHHHh-ccCCccccccHHHHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHHH
Confidence 1 1111111111 111111111111111 25788999999999999999999999998764
|
It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.9e-22 Score=193.08 Aligned_cols=274 Identities=20% Similarity=0.226 Sum_probs=175.1
Q ss_pred CCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcccccccccCCccccCCCCccEEEee
Q 042735 27 KSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVG 106 (667)
Q Consensus 27 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 106 (667)
++-..|+|..|+|+.+.|.+|..+++||.|||++|+|+..-|..|.. +..+..|.+.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G-----------------------L~~l~~Lvly 123 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG-----------------------LASLLSLVLY 123 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh-----------------------hHhhhHHHhh
Confidence 34567777788887777777777888888888888777666665554 3333333332
Q ss_pred C-cccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCC--
Q 042735 107 G-NHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNIT-- 183 (667)
Q Consensus 107 ~-n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-- 183 (667)
+ |+|+......|.++..|+.|.+.-|++.-...+.|..+++|..|.+.+|.+...--.+|..+..++++.+..|.+.
T Consensus 124 g~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 124 GNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred cCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence 2 4444333344555555666666666665555556666666666666666554332335566666666666555521
Q ss_pred ----------CCcCccccCCCCcCeeeccCCcccccCCcccc-CCcccceeecccccccccCc-ccccCCCCCCeeeccC
Q 042735 184 ----------RSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFG-KLNSLTKLILRGNQLIGHLP-SEIGSLTKLEFLNLST 251 (667)
Q Consensus 184 ----------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~ 251 (667)
...|..++.........+.++++..+-+..|. .+.++..-..+.+...+.-| ..|.+|++|+.|+|++
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence 12334455555555555666665544443332 22233222223333333334 4699999999999999
Q ss_pred CcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCcCcccccCCcccccccccc
Q 042735 252 NRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEVFCTIT 323 (667)
Q Consensus 252 N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~~~~~~~~ 323 (667)
|.++.+-+.+|.++..++.|.|..|++...-...|..+..|++|+|++|+|+.-.|..+-.+..+..++.++
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence 999999999999999999999999998766677889999999999999999887776665554444443333
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.4e-21 Score=206.20 Aligned_cols=288 Identities=27% Similarity=0.288 Sum_probs=182.3
Q ss_pred CCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEE
Q 042735 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLA 80 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~ 80 (667)
+.+|+.|....|++..+. -.-++|+.|+.++|.++...+ -..-.+|++++++.|+++ .+|.++.. .+|+.++
T Consensus 198 ~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~ 270 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALN 270 (1081)
T ss_pred ccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEec
Confidence 456667777777765431 234667777777777762221 122446777777777776 45555555 4577777
Q ss_pred cccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCC-CCEEECcCCccC
Q 042735 81 LENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLN-LTFLDISDNNFF 159 (667)
Q Consensus 81 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~ 159 (667)
..+|++ ..+|..+....+|+.|.+..|.+.. +|.....++.|++|+|..|++...++..+..+.. |..|+.+.|.+.
T Consensus 271 ~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~ 348 (1081)
T KOG0618|consen 271 ANHNRL-VALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS 348 (1081)
T ss_pred ccchhH-HhhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc
Confidence 777777 3566667777777777777777763 4555667777888888888776554444444443 566666666654
Q ss_pred CccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCccccc
Q 042735 160 GEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239 (667)
Q Consensus 160 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 239 (667)
....-.=..++.|+.|.+.+|.++...-+.+.+.++|+.|+|++|++.......+.+|..|+.|+||+|+++ .+|.++.
T Consensus 349 ~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva 427 (1081)
T KOG0618|consen 349 TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVA 427 (1081)
T ss_pred ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHH
Confidence 322111123456777777777776655445667777777777777766444445667777777777777775 5667777
Q ss_pred CCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCC
Q 042735 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNF 301 (667)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~ 301 (667)
.+..|++|...+|++.. .| .+..+++|+.+|++.|++....-......++|++||+++|.
T Consensus 428 ~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 77777777777777764 35 56667777777777776643322222233677777777775
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.3e-19 Score=196.73 Aligned_cols=248 Identities=21% Similarity=0.351 Sum_probs=194.9
Q ss_pred CCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcccccccccCCccccCCCCccEEEee
Q 042735 27 KSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVG 106 (667)
Q Consensus 27 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 106 (667)
.+...|+|++++++ .+|..+ .++|+.|+|++|+|+ .+|..+. .+|+.|+|++|.++. +|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~-~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI--PEQITTLILDNNELK-SLPENLQ-GNIKTLYANSNQLTS-IPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc--ccCCcEEEecCCCCC-cCChhhc-cCCCEEECCCCcccc-CChhhh--ccccEEECc
Confidence 56789999999998 577765 368999999999998 5666554 479999999999984 555443 479999999
Q ss_pred CcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCc
Q 042735 107 GNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSI 186 (667)
Q Consensus 107 ~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 186 (667)
+|++. .+|..+. .+|+.|+|++|+++. +|..+. .+|+.|++++|++.+ +|..+. ++|+.|++++|.++. +
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence 99998 5676554 589999999999985 555443 589999999999874 555433 478999999999985 5
Q ss_pred CccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhccc
Q 042735 187 PLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLL 266 (667)
Q Consensus 187 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 266 (667)
|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|++. .+|..+ .++|+.|+|++|.++.. |..+. .
T Consensus 320 P~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~L-P~~l~--~ 388 (754)
T PRK15370 320 PETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNL-PENLP--A 388 (754)
T ss_pred Ccccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCC-CHhHH--H
Confidence 54432 689999999999885 566553 78999999999987 567655 36899999999999864 65554 3
Q ss_pred CCCeecCCCccCccccchhh----hcCCCCCEEECcCCCCCC
Q 042735 267 KLHYLDLSKYQFIQELPKEL----GKLVQLSELELSHNFLGR 304 (667)
Q Consensus 267 ~L~~L~ls~n~~~~~~p~~l----~~l~~L~~L~l~~n~l~~ 304 (667)
.|+.|++++|++. .+|..+ +.++.+..|++.+|++..
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 6899999999976 566544 445888999999999863
|
|
| >KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-19 Score=184.10 Aligned_cols=231 Identities=20% Similarity=0.278 Sum_probs=157.7
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC------CCCeeEEEEEEEeC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR------HRNIVKFYGFCSHA 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~------H~niv~~~g~~~~~ 493 (667)
+.|.+....|+|-|+.|.+|.. ..+..||||++... +.. .+.=.+|+++|.+|. --|.++|+..|...
T Consensus 432 ~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnN----E~M-~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hk 506 (752)
T KOG0670|consen 432 SRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNN----EVM-HKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHK 506 (752)
T ss_pred ceeEEEeccccceeeeeeeccccCCCCeeEEEEeecc----hHH-hhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhc
Confidence 4577777789999999999975 45778999998652 222 345568999999983 45789999999999
Q ss_pred CceEEEEEecCCCChHHHhcccc---------------------------CCcccccccCCeeecCC-CceEEecccccc
Q 042735 494 RHSILIYEYLKRGSLATNLSNDA---------------------------AAEELDISSKNVLLDLE-HKAHVSDFGIAK 545 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~---------------------------~~~~~dlk~~NiLld~~-~~~kl~DFGla~ 545 (667)
++++||+|-+. -+|.+.|..-. ...|-||||+|||+.+. ..+||||||-|.
T Consensus 507 nHLClVFE~Ls-lNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~ 585 (752)
T KOG0670|consen 507 NHLCLVFEPLS-LNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNESKNILKLCDFGSAS 585 (752)
T ss_pred ceeEEEehhhh-chHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceEeccCcceeeeccCcccc
Confidence 99999999765 36766664211 01123999999999865 568999999998
Q ss_pred cccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCC------------ccCCCCh------
Q 042735 546 FLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFV------------SSILPSP------ 601 (667)
Q Consensus 546 ~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~------------~~~~~~~------ 601 (667)
...... .+-..-+..|-||| |+..-|+||.||+|||+.||+.-|... ..-.+..
T Consensus 586 ~~~ene--itPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~MLrl~me~KGk~p~KmlRKgq 663 (752)
T KOG0670|consen 586 FASENE--ITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQMLRLFMELKGKFPNKMLRKGQ 663 (752)
T ss_pred cccccc--ccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHHHHHHHHHhcCCCcHHHhhhcc
Confidence 755332 22233456899999 889999999999999999998543200 0000000
Q ss_pred ------------------hhhh-hhhc--cccCC------CC---CCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHH
Q 042735 602 ------------------SVIN-MRLD--EMLDP------RL---PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651 (667)
Q Consensus 602 ------------------~~~~-~~~~--~~~~~------~~---~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev 651 (667)
.+.. .... ..+.| .+ +.-+.+....+..+.++...|+..||++|-|..|.
T Consensus 664 F~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP~KRit~nqA 743 (752)
T KOG0670|consen 664 FKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDPEKRITVNQA 743 (752)
T ss_pred hhhhhcccccceEEEeccccccceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccChhhcCCHHHH
Confidence 0000 0000 00011 00 00112233456678889999999999999999999
Q ss_pred HHHHHHhh
Q 042735 652 TQQLLFSL 659 (667)
Q Consensus 652 ~~~l~~~~ 659 (667)
++|.|+..
T Consensus 744 L~HpFi~~ 751 (752)
T KOG0670|consen 744 LKHPFITE 751 (752)
T ss_pred hcCCcccC
Confidence 99998753
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-19 Score=210.92 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=111.0
Q ss_pred HhcCC-CCeeEEEEEE-------EeCCceEEEEEecCCCChHHHhcccc-------------------------CCcccc
Q 042735 476 TKIRH-RNIVKFYGFC-------SHARHSILIYEYLKRGSLATNLSNDA-------------------------AAEELD 522 (667)
Q Consensus 476 ~~l~H-~niv~~~g~~-------~~~~~~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~d 522 (667)
++++| +||++++++| .+.+..+.++||+ +++|.+++.... ...|.|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~gIvHrD 105 (793)
T PLN00181 27 KSLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHSQGIVVHN 105 (793)
T ss_pred chhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhCCeeecc
Confidence 34556 6888888887 2334567788987 559998885421 112349
Q ss_pred cccCCeeecC-------------------CCceEEecccccccccCCC----------------CCcccccccccccCCC
Q 042735 523 ISSKNVLLDL-------------------EHKAHVSDFGIAKFLKPDS----------------SNWSALVGTYRYVAPD 567 (667)
Q Consensus 523 lk~~NiLld~-------------------~~~~kl~DFGla~~~~~~~----------------~~~~~~~Gt~~y~aPE 567 (667)
|||+||||+. ++.+|++|||+++...... ......+||+.|||||
T Consensus 106 lKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE 185 (793)
T PLN00181 106 VRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPE 185 (793)
T ss_pred CCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChh
Confidence 9999999954 4566777777776432100 0011246899999999
Q ss_pred ------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccC
Q 042735 568 ------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVS 641 (667)
Q Consensus 568 ------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~ 641 (667)
|+.++|||||||+||||++|..|+..... ...........+... ........++.+||+.+
T Consensus 186 ~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~L~~~ 252 (793)
T PLN00181 186 EDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSR------TMSSLRHRVLPPQIL-------LNWPKEASFCLWLLHPE 252 (793)
T ss_pred hhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHH------HHHHHHHhhcChhhh-------hcCHHHHHHHHHhCCCC
Confidence 57899999999999999999888542110 000000111111110 11223456777899999
Q ss_pred CCCCCCHHHHHHHHHHhh
Q 042735 642 PESRPTMQTITQQLLFSL 659 (667)
Q Consensus 642 p~~RPt~~ev~~~l~~~~ 659 (667)
|.+||+|.||+++.|+..
T Consensus 253 P~~Rps~~eil~h~~~~~ 270 (793)
T PLN00181 253 PSCRPSMSELLQSEFINE 270 (793)
T ss_pred hhhCcChHHHhhchhhhh
Confidence 999999999999988754
|
|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-19 Score=165.65 Aligned_cols=215 Identities=21% Similarity=0.305 Sum_probs=150.2
Q ss_pred CcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 425 AKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 425 ~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
....|.+...|..|+|++..+. +++|++..... ..+..+.|..|.-.++-+.||||..++|.|..+....++..||+
T Consensus 194 l~tkl~e~hsgelwrgrwqgnd-ivakil~vr~~--t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp 270 (448)
T KOG0195|consen 194 LITKLAESHSGELWRGRWQGND-IVAKILNVREV--TARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMP 270 (448)
T ss_pred hhhhhccCCCcccccccccCcc-hhhhhhhhhhc--chhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeecc
Confidence 4456788899999999997766 44555543211 22334579999999999999999999999999999999999999
Q ss_pred CCChHHHhccccCC----------------------------cccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 505 RGSLATNLSNDAAA----------------------------EELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 505 ~g~L~~~l~~~~~~----------------------------~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
.|+|+..|++.... ...-+.+..|++|++.++||+- |=+++.-+. ..
T Consensus 271 ~gslynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~lns~hvmidedltarism-ad~kfsfqe----~g 345 (448)
T KOG0195|consen 271 FGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTARISM-ADTKFSFQE----VG 345 (448)
T ss_pred chHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecchhhhheec-ccceeeeec----cc
Confidence 99999999864311 0116788999999999999851 111110000 01
Q ss_pred ccccccccCCCC---------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 557 LVGTYRYVAPDY---------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 557 ~~Gt~~y~aPE~---------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
..-.|.||+||. .+++|+|||.|++||+.|++.||...+.+.- .-...-+.+.+.+|+....
T Consensus 346 r~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmec----gmkialeglrv~ippgis~----- 416 (448)
T KOG0195|consen 346 RAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMEC----GMKIALEGLRVHIPPGISR----- 416 (448)
T ss_pred cccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhh----hhhhhhccccccCCCCccH-----
Confidence 123578999993 3478999999999999999999864332211 1111223344555544322
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
-+.+++.-|+..||.+||.+..|+--|+.
T Consensus 417 -hm~klm~icmnedpgkrpkfdmivpilek 445 (448)
T KOG0195|consen 417 -HMNKLMNICMNEDPGKRPKFDMIVPILEK 445 (448)
T ss_pred -HHHHHHHHHhcCCCCcCCCcceehhhHHH
Confidence 24456667999999999999988865543
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.1e-20 Score=190.05 Aligned_cols=275 Identities=23% Similarity=0.224 Sum_probs=157.0
Q ss_pred EEeccCCcCc-CCCCccccCCCCCCEEEccCccccc----cCCccccCCCCCCeeeccccccce------eCCCCCcc-c
Q 042735 7 ELHLRDNYLT-GLIPTETWNLKSLVKLGLGGNQFRG----SLPSSVGNLSSLRYLFLFENNLSG------SIPPSVGN-L 74 (667)
Q Consensus 7 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~------~~p~~~~~-~ 74 (667)
.|+|+.+.++ ...+..+..+.+|++|++++|.++. .++..+...++|++|+++++.+.+ .++..+.. .
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 5788888887 3445556677889999999998853 245566677889999998887652 11112222 2
Q ss_pred ccCEEEcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCcccc----ccchhhhcC-CCCC
Q 042735 75 MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRG----TISEAFGIY-LNLT 149 (667)
Q Consensus 75 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~----~~~~~~~~l-~~L~ 149 (667)
+|+.|+|++|.+.+..+..+..+.. . ++|+.|++++|++++ .+...+..+ ++|+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~--------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~ 140 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLR--------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhc--------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCce
Confidence 3555555555554333222222222 1 235555555555542 122233444 5566
Q ss_pred EEECcCCccCCc----cCccCCCCCCCCEEEccCCcCCCC----cCccccCCCCcCeeeccCCccccc----CCccccCC
Q 042735 150 FLDISDNNFFGE----IASNWGKCPKLSTLNVSMNNITRS----IPLEIGNLSTLNEFDLSLNHIVGK----IPKEFGKL 217 (667)
Q Consensus 150 ~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l 217 (667)
.|++++|.+.+. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+. +...+..+
T Consensus 141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~ 220 (319)
T cd00116 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL 220 (319)
T ss_pred EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc
Confidence 666666655421 223344555666666666666531 222334445667777776665432 22334556
Q ss_pred cccceeecccccccccCccccc-----CCCCCCeeeccCCcCCc----cchhhhhcccCCCeecCCCccCccc----cch
Q 042735 218 NSLTKLILRGNQLIGHLPSEIG-----SLTKLEFLNLSTNRFSS----LIPESLGNLLKLHYLDLSKYQFIQE----LPK 284 (667)
Q Consensus 218 ~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~ls~n~~~~~----~p~ 284 (667)
++|+.|++++|.+.+.....+. ..+.|+.|++++|.++. .+...+..+++|+.+++++|.+... +..
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 6777777777776542222221 23678888888887762 1234455567788888888877644 444
Q ss_pred hhhcC-CCCCEEECcCCCC
Q 042735 285 ELGKL-VQLSELELSHNFL 302 (667)
Q Consensus 285 ~l~~l-~~L~~L~l~~n~l 302 (667)
.+... ..|++|++.+|++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 301 SLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHhhcCCchhhcccCCCCC
Confidence 44444 6788888887753
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8e-18 Score=173.82 Aligned_cols=145 Identities=20% Similarity=0.201 Sum_probs=107.7
Q ss_pred HcCCcCcceeecccCeEEEEEEeC--CCceEEEEecCCCCCC-chHHhHHHHHHHHHHHHhcCCCCeeE-EEEEEEeCCc
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP--SKEFLAVKKFNSPLPS-DQIADQKEFFAEIEALTKIRHRNIVK-FYGFCSHARH 495 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~--~~~~~avk~~~~~~~~-~~~~~~~~~~~E~~~l~~l~H~niv~-~~g~~~~~~~ 495 (667)
.++|+..+.||+|+||+||+|... ++..+|||+....... ......+.|.+|++++.+++|+|+|. ++++ +.
T Consensus 17 ~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~----~~ 92 (365)
T PRK09188 17 SARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT----GK 92 (365)
T ss_pred cCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc----CC
Confidence 467889999999999999999764 4667899986532110 11223456999999999999999995 5432 46
Q ss_pred eEEEEEecCCCChHHHhccc-----------------cCCccccc-ccCCeeecCCCceEEecccccccccCCCCC----
Q 042735 496 SILIYEYLKRGSLATNLSND-----------------AAAEELDI-SSKNVLLDLEHKAHVSDFGIAKFLKPDSSN---- 553 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~-----------------~~~~~~dl-k~~NiLld~~~~~kl~DFGla~~~~~~~~~---- 553 (667)
.|+||||+++++|....... ....|.|| ||+|||++.++.+||+|||+|+........
T Consensus 93 ~~LVmE~~~G~~L~~~~~~~~~~~~~~i~~aL~~lH~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~~~~~~~~~ 172 (365)
T PRK09188 93 DGLVRGWTEGVPLHLARPHGDPAWFRSAHRALRDLHRAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRRRGALYRIA 172 (365)
T ss_pred cEEEEEccCCCCHHHhCccchHHHHHHHHHHHHHHHHCCCeeCCCCCcceEEEcCCCCEEEEECccceecccCcchhhhh
Confidence 79999999999996321110 11234599 999999999999999999999976543211
Q ss_pred ----cccccccccccCCCC
Q 042735 554 ----WSALVGTYRYVAPDY 568 (667)
Q Consensus 554 ----~~~~~Gt~~y~aPE~ 568 (667)
.+...|++.|+|||+
T Consensus 173 ~~~d~~~~~~~~~~~~pe~ 191 (365)
T PRK09188 173 AYEDLRHLLKHKRTYAPDA 191 (365)
T ss_pred hhhhhhhhhccCccCCccc
Confidence 245678999999995
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-19 Score=188.19 Aligned_cols=257 Identities=23% Similarity=0.252 Sum_probs=182.2
Q ss_pred EEEccCcccc-ccCCccccCCCCCCeeecccccccee----CCCCCcc-cccCEEEcccccccccCCccccCCCCccEEE
Q 042735 31 KLGLGGNQFR-GSLPSSVGNLSSLRYLFLFENNLSGS----IPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERVI 104 (667)
Q Consensus 31 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 104 (667)
.|+|.++.++ ...+..+..+++|+.|++++|.++.. ++..+.. ..++.|+++++.+.+. +
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~------------- 67 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-P------------- 67 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-c-------------
Confidence 5677777776 34445566777788888888877431 2222222 2355566555544310 0
Q ss_pred eeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCC---CCEEECcCCccCC----ccCccCCCC-CCCCEEE
Q 042735 105 VGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLN---LTFLDISDNNFFG----EIASNWGKC-PKLSTLN 176 (667)
Q Consensus 105 l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~ 176 (667)
.....++..+.++++|+.|++++|.+.+..+..+..+.+ |+.|++++|.+.+ .+...+..+ ++|+.|+
T Consensus 68 ----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~ 143 (319)
T cd00116 68 ----RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143 (319)
T ss_pred ----hHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE
Confidence 000223456777899999999999998666666666665 9999999999863 233455667 8999999
Q ss_pred ccCCcCCCC----cCccccCCCCcCeeeccCCccccc----CCccccCCcccceeeccccccccc----CcccccCCCCC
Q 042735 177 VSMNNITRS----IPLEIGNLSTLNEFDLSLNHIVGK----IPKEFGKLNSLTKLILRGNQLIGH----LPSEIGSLTKL 244 (667)
Q Consensus 177 L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L 244 (667)
+++|.+++. ++..+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.+.+. +...+..+++|
T Consensus 144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L 223 (319)
T cd00116 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL 223 (319)
T ss_pred cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence 999999843 334567778999999999998742 233455667999999999988643 34456678999
Q ss_pred CeeeccCCcCCccchhhhhc-----ccCCCeecCCCccCc----cccchhhhcCCCCCEEECcCCCCCCc
Q 042735 245 EFLNLSTNRFSSLIPESLGN-----LLKLHYLDLSKYQFI----QELPKELGKLVQLSELELSHNFLGRE 305 (667)
Q Consensus 245 ~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~ls~n~~~----~~~p~~l~~l~~L~~L~l~~n~l~~~ 305 (667)
++|++++|.+++.....+.. ...|+.|++++|.+. ..+...+..+++|+++++++|.+...
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 99999999998643333332 379999999999875 23455667778999999999999754
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-18 Score=172.21 Aligned_cols=232 Identities=19% Similarity=0.300 Sum_probs=160.2
Q ss_pred cCCcCcceeecccCeEEEEEEeC----CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCc
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARH 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~----~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~ 495 (667)
..|.....||+|.|++||+|... ....||+|.+..... ......|++.|..+. |.||+++.+++..++.
T Consensus 36 ~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~------p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~ 109 (418)
T KOG1167|consen 36 NAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS------PSRILNELEMLYRLGGSDNIIKLNGCFRNNDQ 109 (418)
T ss_pred hhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccC------chHHHHHHHHHHHhccchhhhcchhhhccCCe
Confidence 45778889999999999999643 456799998865332 235789999999997 9999999999999999
Q ss_pred eEEEEEecCCCChHHHhccc---------------------cCCcccccccCCeeec-CCCceEEeccccccccc-----
Q 042735 496 SILIYEYLKRGSLATNLSND---------------------AAAEELDISSKNVLLD-LEHKAHVSDFGIAKFLK----- 548 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~---------------------~~~~~~dlk~~NiLld-~~~~~kl~DFGla~~~~----- 548 (667)
..+|+||++.-+..+++..- ....|.||||+|+|.+ ..+.-.|.|||+|...+
T Consensus 110 v~ivlp~~~H~~f~~l~~~l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~ 189 (418)
T KOG1167|consen 110 VAIVLPYFEHDRFRDLYRSLSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQT 189 (418)
T ss_pred eEEEecccCccCHHHHHhcCCHHHHHHHHHHHHHHhhhhhccCccccCCCccccccccccCCceEEechhHHHHHhhhhh
Confidence 99999999988776654331 1233569999999998 45678899999997211
Q ss_pred ------------C-CC--------------CC------------cccccccccccCCC-------CCCCchHHHHHHHHH
Q 042735 549 ------------P-DS--------------SN------------WSALVGTYRYVAPD-------YRKKCDVYSFRVLAL 582 (667)
Q Consensus 549 ------------~-~~--------------~~------------~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ 582 (667)
+ .. .. .....||+||-||| .+.++||||-|||++
T Consensus 190 ~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~L 269 (418)
T KOG1167|consen 190 EHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILL 269 (418)
T ss_pred hhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeeccceee
Confidence 0 00 00 01246999999999 367899999999999
Q ss_pred HHHhCCCCCCCCccCCCCh-------------------------------hhhhhh-hccccC-CCCCC-CC-----Cch
Q 042735 583 EVIKGKHPRGFVSSILPSP-------------------------------SVINMR-LDEMLD-PRLPP-PS-----PDV 623 (667)
Q Consensus 583 ElltG~~p~~~~~~~~~~~-------------------------------~~~~~~-~~~~~~-~~~~~-~~-----~~~ 623 (667)
-+++++.||-....-.... ...... --+-++ ..+.. .. ...
T Consensus 270 slls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~ 349 (418)
T KOG1167|consen 270 SLLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYKSRQPNTEREIG 349 (418)
T ss_pred hhhccccccccCccccchHHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhcccccccceeeccc
Confidence 9999999964110000000 000000 000000 00000 00 000
Q ss_pred H-HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 624 Q-GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 624 ~-~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
. .....+.++..+|++.+|.+|-|+++.++|.+|.
T Consensus 350 ~d~~~~~~~dlLdk~le~np~kRitAEeALkHpFF~ 385 (418)
T KOG1167|consen 350 SDVFPALLLDLLDKCLELNPQKRITAEDALKHPFFD 385 (418)
T ss_pred cccccHHHHHHHHHHccCChhhcccHHHHhcCcCCc
Confidence 0 1122567888899999999999999999998875
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.5e-19 Score=153.13 Aligned_cols=166 Identities=31% Similarity=0.548 Sum_probs=119.5
Q ss_pred CCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcC
Q 042735 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLN 197 (667)
Q Consensus 118 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 197 (667)
+.++.+++.|.|+.|+++. .|..++.+.+|+.|++++|++ .++|.+++.+++|+.|+++.|++. .+|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 4566777788888888874 455677788888888888887 467777888888888888888775 5777788888888
Q ss_pred eeeccCCcccc-cCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCc
Q 042735 198 EFDLSLNHIVG-KIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKY 276 (667)
Q Consensus 198 ~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n 276 (667)
.|||++|.+.. .+|..|-.|+.|+.|+|++|.+. .+|..++++++|+.|.+.+|.+-. +|..++.+..|+.|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccc
Confidence 88888777653 35666777777777777777764 667777777777777777777654 4667777777777777777
Q ss_pred cCccccchhhhcC
Q 042735 277 QFIQELPKELGKL 289 (667)
Q Consensus 277 ~~~~~~p~~l~~l 289 (667)
++ ..+|.+++.+
T Consensus 184 rl-~vlppel~~l 195 (264)
T KOG0617|consen 184 RL-TVLPPELANL 195 (264)
T ss_pred ee-eecChhhhhh
Confidence 63 3455555543
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.5e-19 Score=153.42 Aligned_cols=163 Identities=29% Similarity=0.493 Sum_probs=136.5
Q ss_pred CCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEE
Q 042735 96 RNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTL 175 (667)
Q Consensus 96 ~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 175 (667)
.+.+.++|.++.|+++ .+|+.+..+.+|+.|++.+|++. .+|..++.+++|+.|++.-|++. .+|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3455666667777766 45666888888888888888886 57778888888888888888774 678889999999999
Q ss_pred EccCCcCCC-CcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcC
Q 042735 176 NVSMNNITR-SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRF 254 (667)
Q Consensus 176 ~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 254 (667)
+|++|++.. .+|..|..|..|+.|+|++|.+. .+|+.++.+++|+.|.+..|.+. .+|.+++.+..|++|.+.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 999988865 68999999999999999999986 68889999999999999999987 6899999999999999999999
Q ss_pred Cccchhhhhc
Q 042735 255 SSLIPESLGN 264 (667)
Q Consensus 255 ~~~~p~~~~~ 264 (667)
+-. |..+++
T Consensus 186 ~vl-ppel~~ 194 (264)
T KOG0617|consen 186 TVL-PPELAN 194 (264)
T ss_pred eec-Chhhhh
Confidence 865 444544
|
|
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.3e-18 Score=177.68 Aligned_cols=213 Identities=25% Similarity=0.336 Sum_probs=152.3
Q ss_pred eecccCeEEEEEEe----CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceEEEEEec
Q 042735 429 IGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSILIYEYL 503 (667)
Q Consensus 429 lg~g~~g~vy~~~~----~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~lv~ey~ 503 (667)
+|+|.||.|+.++. ..+..+|.|..++........ .....|..++...+ ||.+|++.-.+..+...+++++|.
T Consensus 2 lg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~--~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~ 79 (612)
T KOG0603|consen 2 LGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDR--THTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFL 79 (612)
T ss_pred CCcCCCcchHHHHHhccccccchhhhhcccccccccccc--cccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhc
Confidence 68999999998743 345668888776543322222 25667888899888 999999999999999999999999
Q ss_pred CCCChHHHhccccCC------------------------cccccccCCeeecCCCceEEecccccccccCCCCCcccccc
Q 042735 504 KRGSLATNLSNDAAA------------------------EELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559 (667)
Q Consensus 504 ~~g~L~~~l~~~~~~------------------------~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~G 559 (667)
.+|++...+...... ...|+|++||++|.+|++|+.|||+++....... .||
T Consensus 80 rgg~lft~l~~~~~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~----~cg 155 (612)
T KOG0603|consen 80 RGGDLFTRLSKEVMFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKI----ACG 155 (612)
T ss_pred ccchhhhccccCCchHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhhHhHhhhh----ccc
Confidence 999998776543211 1229999999999999999999999997654332 299
Q ss_pred cccccCCC----CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHH
Q 042735 560 TYRYVAPD----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF 635 (667)
Q Consensus 560 t~~y~aPE----~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (667)
|..||||| +...+|.|||||+++||+||-.||.. .+.. .+....++.+. ......-++..
T Consensus 156 t~eymApEI~~gh~~a~D~ws~gvl~felltg~~pf~~--------~~~~----~Il~~~~~~p~----~l~~~a~~~~~ 219 (612)
T KOG0603|consen 156 TYEYRAPEIINGHLSAADWWSFGVLAFELLTGTLPFGG--------DTMK----RILKAELEMPR----ELSAEARSLFR 219 (612)
T ss_pred chhhhhhHhhhccCCcccchhhhhhHHHHhhCCCCCch--------HHHH----HHhhhccCCch----hhhHHHHHHHH
Confidence 99999999 46789999999999999999999763 1111 11111111111 11112223444
Q ss_pred hccccCCCCCCC-----HHHHHHHHHHhhhhhc
Q 042735 636 SCLDVSPESRPT-----MQTITQQLLFSLVYFS 663 (667)
Q Consensus 636 ~Cl~~~p~~RPt-----~~ev~~~l~~~~~~~~ 663 (667)
.....+|..|-- ..|++++.++....|+
T Consensus 220 ~l~~r~p~nrLg~~~~~~~eik~h~f~~~i~~~ 252 (612)
T KOG0603|consen 220 QLFKRNPENRLGAGPDGVDEIKQHEFFQSIDWN 252 (612)
T ss_pred HHHhhCHHHHhccCcchhHHHhccchheeeeHh
Confidence 566777777754 4678888887776665
|
|
| >KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-16 Score=166.49 Aligned_cols=185 Identities=24% Similarity=0.403 Sum_probs=127.3
Q ss_pred HHhcCCCCeeEEEEEEEeCCceEEEEEecCCCChHHHhccccC--------------------------CcccccccCCe
Q 042735 475 LTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAA--------------------------AEELDISSKNV 528 (667)
Q Consensus 475 l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~Ni 528 (667)
|+.+.|.|+.+++|.+.++...+.|.+||+.|+|.+.+..+.. ..|-.++++|+
T Consensus 1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nC 80 (484)
T KOG1023|consen 1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSNC 80 (484)
T ss_pred CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhcCcceeeeeeccccc
Confidence 3568899999999999999999999999999999988765321 11227999999
Q ss_pred eecCCCceEEecccccccccCC--CCCcccccccccccCCCC-------------CCCchHHHHHHHHHHHHhCCCCCCC
Q 042735 529 LLDLEHKAHVSDFGIAKFLKPD--SSNWSALVGTYRYVAPDY-------------RKKCDVYSFRVLALEVIKGKHPRGF 593 (667)
Q Consensus 529 Lld~~~~~kl~DFGla~~~~~~--~~~~~~~~Gt~~y~aPE~-------------~~~~DV~sfGvvl~ElltG~~p~~~ 593 (667)
++|..+.+|++|||+....... ........-..-|.|||. +.++||||||++++|+++.+.||+.
T Consensus 81 lvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~ 160 (484)
T KOG1023|consen 81 LVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDL 160 (484)
T ss_pred eeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCcccc
Confidence 9999999999999999876431 111111223346899982 4569999999999999999999874
Q ss_pred CccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 594 VSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.........+. ..+...-.....+......+....+..++.+||..+|++||++++|-..+.....
T Consensus 161 ~~~~~~~~eii-~~~~~~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~ 226 (484)
T KOG1023|consen 161 RNLVEDPDEII-LRVKKGGSNPFRPSIELLNELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTINK 226 (484)
T ss_pred ccccCChHHHH-HHHHhcCCCCcCcchhhhhhcchHHHHHHHHhcccChhhCccHHHHHhhhhhhcc
Confidence 33222211111 1111101111111111111222257788889999999999999999887665543
|
|
| >PRK10359 lipopolysaccharide core biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-16 Score=151.14 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=118.8
Q ss_pred CcCHHHHHHH--HcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHH------HHHHHHHHHhcCCC
Q 042735 410 KFDYVEIIRA--INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKE------FFAEIEALTKIRHR 481 (667)
Q Consensus 410 ~~~~~~~~~~--~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~------~~~E~~~l~~l~H~ 481 (667)
...+.++... -++|...+++|+|+||.||.+.. ++..+|+|.+.......+.. ... |.+|+..+.++.||
T Consensus 18 ~~~~~~~~~~~l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~-~~~f~~g~~~e~Ea~~l~rL~~~ 95 (232)
T PRK10359 18 DNKYKEIFDDFLSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERF-LKSFVKGDYYENLIVQTDRVRSE 95 (232)
T ss_pred cccHHHHHHHHhhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHH-HHhhhhhHHHHHHHHHHHHHHHC
Confidence 3345555443 36788999999999999999866 46679999987654433222 222 67999999999999
Q ss_pred CeeEEEEEEEeC--------CceEEEEEecCCCChHHHhccc----------------cCCcccccccCCeeecCCCceE
Q 042735 482 NIVKFYGFCSHA--------RHSILIYEYLKRGSLATNLSND----------------AAAEELDISSKNVLLDLEHKAH 537 (667)
Q Consensus 482 niv~~~g~~~~~--------~~~~lv~ey~~~g~L~~~l~~~----------------~~~~~~dlk~~NiLld~~~~~k 537 (667)
+|.....++... ...++||||++|.+|.+..... ....|.|+||+||+++.++ ++
T Consensus 96 GI~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~~~~~~~~~i~~~l~~lH~~gi~H~Dikp~Nili~~~g-i~ 174 (232)
T PRK10359 96 GLASLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMPEISEDVKAKIKASIESLHQHGMVSGDPHKGNFIVSKNG-LR 174 (232)
T ss_pred CCCcceEeeeecccccccccCCeEEEEEEECCccHHHhhhccHHHHHHHHHHHHHHHHcCCccCCCChHHEEEeCCC-EE
Confidence 999999986643 3578999999999997753211 1122449999999999988 99
Q ss_pred EecccccccccCCCCCcccccccccccC-CCCCCCchHHHHHHHHHHHH
Q 042735 538 VSDFGIAKFLKPDSSNWSALVGTYRYVA-PDYRKKCDVYSFRVLALEVI 585 (667)
Q Consensus 538 l~DFGla~~~~~~~~~~~~~~Gt~~y~a-PE~~~~~DV~sfGvvl~Ell 585 (667)
++|||..+........ .. |+- =+|..++|+|||||++.-..
T Consensus 175 liDfg~~~~~~e~~a~-d~------~vler~y~~~~di~~lg~~~~~~~ 216 (232)
T PRK10359 175 IIDLSGKRCTAQRKAK-DR------IDLERHYGIKNEIKDLGYYLLIYK 216 (232)
T ss_pred EEECCCcccccchhhH-HH------HHHHhHhcccccccceeEeehHHH
Confidence 9999998765432211 10 110 01567899999999887653
|
|
| >COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-14 Score=151.76 Aligned_cols=228 Identities=26% Similarity=0.375 Sum_probs=160.1
Q ss_pred CcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCC-CeeEEEEEEEeCCceEEEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR-NIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~-niv~~~g~~~~~~~~~lv~e 501 (667)
|.....+|.|+||.||++... ..+++|.+........ .....|.+|+.+++.+.|+ +++++++++......++++|
T Consensus 2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (384)
T COG0515 2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKS-KEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVME 78 (384)
T ss_pred ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccch-hHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEe
Confidence 456678999999999999877 6788898876443221 2356799999999999988 79999999977777899999
Q ss_pred ecCCCChHHHhcccc----C-----------------------CcccccccCCeeecCCC-ceEEecccccccccCCCC-
Q 042735 502 YLKRGSLATNLSNDA----A-----------------------AEELDISSKNVLLDLEH-KAHVSDFGIAKFLKPDSS- 552 (667)
Q Consensus 502 y~~~g~L~~~l~~~~----~-----------------------~~~~dlk~~NiLld~~~-~~kl~DFGla~~~~~~~~- 552 (667)
|+.++++.+.+.... . ..|.|+||+||+++..+ .+|++|||.++.......
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~ 158 (384)
T COG0515 79 YVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGST 158 (384)
T ss_pred cCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCcc
Confidence 999999986554321 0 12349999999999888 799999999986554332
Q ss_pred -----CcccccccccccCCCC---------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCC
Q 042735 553 -----NWSALVGTYRYVAPDY---------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618 (667)
Q Consensus 553 -----~~~~~~Gt~~y~aPE~---------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (667)
......||..|+|||. ....|+||+|++++++++|..|+............. ........+....
T Consensus 159 ~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 237 (384)
T COG0515 159 SSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTL-KIILELPTPSLAS 237 (384)
T ss_pred ccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHH-HHHHhcCCccccc
Confidence 2356789999999992 235799999999999999999965332110001111 1111111110111
Q ss_pred CCCch--HHHHHHHHHHHHhccccCCCCCCCHHHHHHH
Q 042735 619 PSPDV--QGKLISIMEVAFSCLDVSPESRPTMQTITQQ 654 (667)
Q Consensus 619 ~~~~~--~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~ 654 (667)
..... ......+.+++..|+..+|..|.++.+....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 275 (384)
T COG0515 238 PLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSH 275 (384)
T ss_pred ccCccccchhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence 11110 0112345677889999999999999887766
|
|
| >KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-16 Score=174.64 Aligned_cols=232 Identities=19% Similarity=0.235 Sum_probs=153.8
Q ss_pred CcceeecccCeEEEEEEe-CCCceEEEEecCCC--CCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 425 AKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSP--LPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 425 ~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~--~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
....+|.|++|.|+.+.. ......+.|.+... ...........+..|.-+-+.++|||++.....+.+.....-+||
T Consensus 322 ~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~mE 401 (601)
T KOG0590|consen 322 PGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSME 401 (601)
T ss_pred ccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhhh
Confidence 456899999998887753 34444555544311 111111122236678888889999999888887777766666699
Q ss_pred ecCCCChHHHhccc-c-----------------------CCcccccccCCeeecCCCceEEecccccccccCCC----CC
Q 042735 502 YLKRGSLATNLSND-A-----------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS----SN 553 (667)
Q Consensus 502 y~~~g~L~~~l~~~-~-----------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~----~~ 553 (667)
||++ +|+..+... . ...++|+|++|++++.+|.+||+|||.+....-.. ..
T Consensus 402 ~~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~ 480 (601)
T KOG0590|consen 402 YCPY-DLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKNIHE 480 (601)
T ss_pred cccH-HHHHHHhcccccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEecCCceEEeecCcceeeccCcchhhhh
Confidence 9999 998877653 1 11245999999999999999999999997654222 22
Q ss_pred cccccccccccCCC------CC-CCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 WSALVGTYRYVAPD------YR-KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~-~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
...++|+-.|+||| |+ ...||||.|||+..|++|+.||.......... .......... ...++..-....
T Consensus 481 ~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~l 557 (601)
T KOG0590|consen 481 SSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSF--KTNNYSDQRN-IFEGPNRLLSLL 557 (601)
T ss_pred hcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccch--hhhccccccc-cccChHHHHHhc
Confidence 45678999999999 33 35899999999999999999986432211110 0000000000 001111111112
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
......++.+.++.+|.+|-|+++|++.-|+..+
T Consensus 558 p~~~~~~~~~~l~~~P~~R~ti~~i~~d~W~~~i 591 (601)
T KOG0590|consen 558 PRETRIIIYRMLQLDPTKRITIEQILNDEWIRSI 591 (601)
T ss_pred hhhHHHHHHHHccCChhheecHHHHhhChHhhhc
Confidence 2234567778999999999999999999888643
|
|
| >KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.6e-15 Score=148.27 Aligned_cols=79 Identities=22% Similarity=0.394 Sum_probs=62.9
Q ss_pred cCCcCcceeecccCeEEEEEE-eCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-C-------CCeeEEEEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-H-------RNIVKFYGFCS 491 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H-------~niv~~~g~~~ 491 (667)
.+|.+.+.||.|.|++||+|- ....+.||+|+.+.. ....+..+.||++|++++ + .+||+|++.|.
T Consensus 78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA-----qhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~Fk 152 (590)
T KOG1290|consen 78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA-----QHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFK 152 (590)
T ss_pred ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehh-----hHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccce
Confidence 467788999999999999995 466788999997652 123456788999999885 2 37999999996
Q ss_pred e----CCceEEEEEecC
Q 042735 492 H----ARHSILIYEYLK 504 (667)
Q Consensus 492 ~----~~~~~lv~ey~~ 504 (667)
. +.+.++|+||+-
T Consensus 153 hsGpNG~HVCMVfEvLG 169 (590)
T KOG1290|consen 153 HSGPNGQHVCMVFEVLG 169 (590)
T ss_pred ecCCCCcEEEEEehhhh
Confidence 5 568899999874
|
|
| >PRK12274 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-14 Score=133.37 Aligned_cols=163 Identities=10% Similarity=0.021 Sum_probs=114.9
Q ss_pred cCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceEEEEEe
Q 042735 424 DAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSILIYEY 502 (667)
Q Consensus 424 ~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~lv~ey 502 (667)
.....+++|+||+||.+.- .+..++.+.+.....-........|.+|+++|+++. |+++++++++ ...+++|||
T Consensus 5 ~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmey 79 (218)
T PRK12274 5 AVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSY 79 (218)
T ss_pred ccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEee
Confidence 4557899999999998766 455566565543211101111235889999999996 5889999886 346899999
Q ss_pred cCCCChHHHhcccc-----------------CCccccc-ccCCeeecCCCceEEecccccccccCCCCC----c------
Q 042735 503 LKRGSLATNLSNDA-----------------AAEELDI-SSKNVLLDLEHKAHVSDFGIAKFLKPDSSN----W------ 554 (667)
Q Consensus 503 ~~~g~L~~~l~~~~-----------------~~~~~dl-k~~NiLld~~~~~kl~DFGla~~~~~~~~~----~------ 554 (667)
+.|.+|.+...... ...|.|| ||+|||++.++.++|+|||+|......... .
T Consensus 80 I~G~~L~~~~~~~~~~~~~qi~~~L~~lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~ 159 (218)
T PRK12274 80 LAGAAMYQRPPRGDLAYFRAARRLLQQLHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRH 159 (218)
T ss_pred ecCccHHhhhhhhhHHHHHHHHHHHHHHHHCcCccCCCCCcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHH
Confidence 99999976542211 1234599 799999999999999999999865433210 0
Q ss_pred ---ccccccccccCCC----CCC----CchHHHHHHHHHHHHhCCCCC
Q 042735 555 ---SALVGTYRYVAPD----YRK----KCDVYSFRVLALEVIKGKHPR 591 (667)
Q Consensus 555 ---~~~~Gt~~y~aPE----~~~----~~DV~sfGvvl~ElltG~~p~ 591 (667)
.-...++.|++|+ ... ..+.++-|.-+|.++||+.+.
T Consensus 160 llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~ 207 (218)
T PRK12274 160 LLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLH 207 (218)
T ss_pred HHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCc
Confidence 0113577888886 122 357889999999999999874
|
|
| >cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-13 Score=129.06 Aligned_cols=119 Identities=19% Similarity=0.227 Sum_probs=82.2
Q ss_pred cceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHH----------------------hHHHHHHHHHHHHhcCCCCe
Q 042735 426 KYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIA----------------------DQKEFFAEIEALTKIRHRNI 483 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~----------------------~~~~~~~E~~~l~~l~H~ni 483 (667)
..+||+|+||.||+|...+|+.||||+++......... ......+|++.+.++.|+++
T Consensus 2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v 81 (190)
T cd05147 2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI 81 (190)
T ss_pred CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 35799999999999998889999999986542211100 01123459999999988776
Q ss_pred eEEEEEEEeCCceEEEEEecCCCChHHH-hcc------------------------ccCCcccccccCCeeecCCCceEE
Q 042735 484 VKFYGFCSHARHSILIYEYLKRGSLATN-LSN------------------------DAAAEELDISSKNVLLDLEHKAHV 538 (667)
Q Consensus 484 v~~~g~~~~~~~~~lv~ey~~~g~L~~~-l~~------------------------~~~~~~~dlk~~NiLld~~~~~kl 538 (667)
.....+.. ...++||||++++++... +.. .....|.|+||+|||++ ++.++|
T Consensus 82 ~~p~~~~~--~~~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli~-~~~v~L 158 (190)
T cd05147 82 PCPEPILL--KSHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQDCRLVHADLSEYNLLYH-DGKLYI 158 (190)
T ss_pred CCCcEEEe--cCCEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEE-CCcEEE
Confidence 44333322 234899999998876432 111 11123459999999998 578999
Q ss_pred ecccccccc
Q 042735 539 SDFGIAKFL 547 (667)
Q Consensus 539 ~DFGla~~~ 547 (667)
+|||+|...
T Consensus 159 iDFG~a~~~ 167 (190)
T cd05147 159 IDVSQSVEH 167 (190)
T ss_pred EEccccccC
Confidence 999999754
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c |
| >cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.5e-13 Score=126.24 Aligned_cols=120 Identities=22% Similarity=0.222 Sum_probs=85.8
Q ss_pred cceeecccCeEEEEEEeCCCceEEEEecCCCCCCch----------------------HHhHHHHHHHHHHHHhcCCCCe
Q 042735 426 KYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQ----------------------IADQKEFFAEIEALTKIRHRNI 483 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~----------------------~~~~~~~~~E~~~l~~l~H~ni 483 (667)
...||+|+||+||+|...+|+.||||.+........ ......+.+|.+.+.+++|+++
T Consensus 2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i 81 (190)
T cd05145 2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV 81 (190)
T ss_pred CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 357999999999999877899999999875422100 0001234689999999999988
Q ss_pred eEEEEEEEeCCceEEEEEecCCCChHHH-hccc------------------------cCCcccccccCCeeecCCCceEE
Q 042735 484 VKFYGFCSHARHSILIYEYLKRGSLATN-LSND------------------------AAAEELDISSKNVLLDLEHKAHV 538 (667)
Q Consensus 484 v~~~g~~~~~~~~~lv~ey~~~g~L~~~-l~~~------------------------~~~~~~dlk~~NiLld~~~~~kl 538 (667)
.....+... ..++||||++++++... +... ....|.|+||+||+++ ++.++|
T Consensus 82 ~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll~-~~~~~l 158 (190)
T cd05145 82 PVPEPILLK--KNVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYH-DGKPYI 158 (190)
T ss_pred CCceEEEec--CCEEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEEE-CCCEEE
Confidence 554444333 24899999998854322 2111 1223459999999999 899999
Q ss_pred eccccccccc
Q 042735 539 SDFGIAKFLK 548 (667)
Q Consensus 539 ~DFGla~~~~ 548 (667)
+|||+++...
T Consensus 159 iDFG~a~~~~ 168 (190)
T cd05145 159 IDVSQAVELD 168 (190)
T ss_pred EEcccceecC
Confidence 9999998754
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-14 Score=156.77 Aligned_cols=215 Identities=21% Similarity=0.261 Sum_probs=144.9
Q ss_pred CCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYE 501 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~e 501 (667)
++...+.+|+++|=+|.+|+.+.|. |+||++.+....-..+.-++-.+|++ ...++|||.+.+.-+-...+..|||-+
T Consensus 24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAAylvRq 101 (1431)
T KOG1240|consen 24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAAYLVRQ 101 (1431)
T ss_pred ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHHHHHHH
Confidence 4566778999999999999998887 88998866543222222233344555 667789999999888777788888888
Q ss_pred ecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEeccccccc--ccCCCC-Cc
Q 042735 502 YLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKF--LKPDSS-NW 554 (667)
Q Consensus 502 y~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~--~~~~~~-~~ 554 (667)
|..+ +|++.+..... .-|-|||.+|||++.-.=+.|+||.--|. ++.++. ..
T Consensus 102 yvkh-nLyDRlSTRPFL~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPadf 180 (1431)
T KOG1240|consen 102 YVKH-NLYDRLSTRPFLVLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPADF 180 (1431)
T ss_pred HHhh-hhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHcCccccccccceEEEeeechhhhhcccccCCccCCCCCcccc
Confidence 8875 78777654321 11239999999999777789999976553 222221 11
Q ss_pred c----cccccccccCCCC-----------------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCC----hhhhhhhh
Q 042735 555 S----ALVGTYRYVAPDY-----------------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPS----PSVINMRL 608 (667)
Q Consensus 555 ~----~~~Gt~~y~aPE~-----------------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~----~~~~~~~~ 608 (667)
+ +..-...|+|||- +++.||||.|||+.|+++ |++||... ....+ .......+
T Consensus 181 ~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LS-QL~aYr~~~~~~~e~~L 259 (1431)
T KOG1240|consen 181 TFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLS-QLLAYRSGNADDPEQLL 259 (1431)
T ss_pred eEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHH-HHHhHhccCccCHHHHH
Confidence 1 2223357999991 246799999999999988 67777521 11111 01111222
Q ss_pred ccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHH
Q 042735 609 DEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQ 654 (667)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~ 654 (667)
+++-|. .+..++..+++.||++|-++++.++.
T Consensus 260 e~Ied~--------------~~Rnlil~Mi~rdPs~RlSAedyL~~ 291 (1431)
T KOG1240|consen 260 EKIEDV--------------SLRNLILSMIQRDPSKRLSAEDYLQK 291 (1431)
T ss_pred HhCcCc--------------cHHHHHHHHHccCchhccCHHHHHHh
Confidence 222221 24456778899999999999999987
|
|
| >KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.6e-12 Score=130.79 Aligned_cols=224 Identities=20% Similarity=0.204 Sum_probs=145.2
Q ss_pred CCcCcceeecccCeEEEEEEeCCC--ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCC----CCeeEEEEEE-EeCC
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPSK--EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH----RNIVKFYGFC-SHAR 494 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~~--~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H----~niv~~~g~~-~~~~ 494 (667)
.|...+.||+|+||.||.|..... ..+|+|......... . ..+..|+.++..+.+ +++..+++.. ....
T Consensus 19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~---~-~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~ 94 (322)
T KOG1164|consen 19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSK---P-SVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTED 94 (322)
T ss_pred ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCC---C-ccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCc
Confidence 688899999999999999986553 467887654322111 1 146778888888873 6899999988 4778
Q ss_pred ceEEEEEecCCCChHHHhcccc--------------------------CCcccccccCCeeecCC-----CceEEecccc
Q 042735 495 HSILIYEYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLE-----HKAHVSDFGI 543 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~-----~~~kl~DFGl 543 (667)
..|+||+.+ |.+|.+...... ...|.||||+|+++... ..+.+.|||+
T Consensus 95 ~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGl 173 (322)
T KOG1164|consen 95 FNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGL 173 (322)
T ss_pred eeEEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCC
Confidence 899999965 457766542111 12245999999999855 4689999999
Q ss_pred cc--cccCCCC-------C-cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhh
Q 042735 544 AK--FLKPDSS-------N-WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR 607 (667)
Q Consensus 544 a~--~~~~~~~-------~-~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~ 607 (667)
|+ ....... . ...+.||..|+++. ..++-|+||++-++.|+..|..||................
T Consensus 174 ar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~~~~~ 253 (322)
T KOG1164|consen 174 ARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKFEKDP 253 (322)
T ss_pred CccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHHHHHHHh
Confidence 98 3221111 1 22456999999985 5778999999999999999999985433211111111111
Q ss_pred hccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 608 LDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
....... ... .... .+.++...+-..+...+|--..+...+..
T Consensus 254 ~~~~~~~-~~~---~~~~---~~~~~~~~~~~~~~~~~Pdy~~~~~~l~~ 296 (322)
T KOG1164|consen 254 RKLLTDR-FGD---LKPE---EFAKILEYIDSLDYEDKPDYEKLAELLKD 296 (322)
T ss_pred hhhcccc-ccC---CChH---HHHHHHHHhhccCCcCCCCHHHHHHHHHH
Confidence 1111111 111 1112 23334444455788899998888766543
|
|
| >PRK10345 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-12 Score=125.16 Aligned_cols=117 Identities=17% Similarity=0.210 Sum_probs=85.3
Q ss_pred CcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-----CCCCeeEEEEEEEeCC---
Q 042735 423 FDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-----RHRNIVKFYGFCSHAR--- 494 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-----~H~niv~~~g~~~~~~--- 494 (667)
.+....||+|+||.||. .+.....+||++..... ...+.+.+|+++++++ +||||++++|++.+..
T Consensus 4 L~~~~~LG~G~~~~Vy~--hp~~~~k~IKv~~~~~~----~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g 77 (210)
T PRK10345 4 LSEQSPLGTGRHRKCYA--HPEDAQRCIKIVYHRGD----GGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTG 77 (210)
T ss_pred cCCcceecCCCceEEEE--CCCCcCeEEEEEecccc----chHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCe
Confidence 34567899999999996 44434457888754211 2345689999999999 6799999999998863
Q ss_pred ceE-EEEEe--cCCCChHHHhccccCC----------------------cccccccCCeeecC----CCceEEecccccc
Q 042735 495 HSI-LIYEY--LKRGSLATNLSNDAAA----------------------EELDISSKNVLLDL----EHKAHVSDFGIAK 545 (667)
Q Consensus 495 ~~~-lv~ey--~~~g~L~~~l~~~~~~----------------------~~~dlk~~NiLld~----~~~~kl~DFGla~ 545 (667)
..+ +|+|| +++|+|.+.+...... .+.||||+|||++. ++.++|+||+-++
T Consensus 78 ~v~~~I~e~~G~~~~tL~~~l~~~~~~e~~~~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~ 157 (210)
T PRK10345 78 YVYDVIADFDGKPSITLTEFAEQCRYEEDVAQLRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIGES 157 (210)
T ss_pred EEEEEEecCCCCcchhHHHHHHcccccHhHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCCc
Confidence 333 78999 6689998888543211 12399999999974 3479999954443
|
|
| >KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.9e-13 Score=137.00 Aligned_cols=147 Identities=20% Similarity=0.320 Sum_probs=101.3
Q ss_pred CceEEEEEecCCCChHHHhccccC----------------C--------cccccccCCeeecCCCceEEecccccccccC
Q 042735 494 RHSILIYEYLKRGSLATNLSNDAA----------------A--------EELDISSKNVLLDLEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~~----------------~--------~~~dlk~~NiLld~~~~~kl~DFGla~~~~~ 549 (667)
...|+.|++|..++|.+|+..... + .+.|+||.||....+..+||.|||+......
T Consensus 329 ~~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~yk~~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~ 408 (516)
T KOG1033|consen 329 VYLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEYKGLIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDK 408 (516)
T ss_pred cchhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhhccchhhhccccccccccchhhhhhhhhheeeccc
Confidence 357899999999999999963211 1 1449999999999999999999999987654
Q ss_pred CC------CCcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCC
Q 042735 550 DS------SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRL 616 (667)
Q Consensus 550 ~~------~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (667)
.. ...+...||..||+|| |..|+|+||+|++|+|+++ =..++. ......++-|..+
T Consensus 409 ~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~e-----------r~~t~~d~r~g~i 477 (516)
T KOG1033|consen 409 DETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFE-----------RIATLTDIRDGII 477 (516)
T ss_pred CCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHH-----------HHHhhhhhhcCCC
Confidence 43 1245678999999999 7899999999999999997 222221 0111122233333
Q ss_pred CCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHH
Q 042735 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQ 654 (667)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~ 654 (667)
|+... ..-..-..+.+..+...|.+||++.++..+
T Consensus 478 p~~~~---~d~p~e~~ll~~lls~~p~~RP~~~~~~~~ 512 (516)
T KOG1033|consen 478 PPEFL---QDYPEEYTLLQQLLSPSPEERPSAIEVALH 512 (516)
T ss_pred ChHHh---hcCcHHHHHHHHhcCCCcccCchHHHHhhh
Confidence 32110 001112356667899999999966655543
|
|
| >PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=136.73 Aligned_cols=126 Identities=15% Similarity=0.231 Sum_probs=93.8
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCc---hHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSD---QIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~---~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
..|...+.||+|+||.||+|.+.....++.++..+..... .....+.+.+|++++.+++|++++..+.++......+
T Consensus 333 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~ 412 (535)
T PRK09605 333 RRKIPDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEKT 412 (535)
T ss_pred cccCccceeccCCcEEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCCE
Confidence 3445678899999999999987655433322222211111 1122356889999999999999999888888878889
Q ss_pred EEEEecCCCChHHHhcc----------------ccCCcccccccCCeeecCCCceEEecccccccc
Q 042735 498 LIYEYLKRGSLATNLSN----------------DAAAEELDISSKNVLLDLEHKAHVSDFGIAKFL 547 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~----------------~~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~ 547 (667)
+||||+++++|.+.+.. .....|.|+||+|||+ .++.++|+|||+++..
T Consensus 413 lv~E~~~g~~L~~~l~~~~~~~~~i~~~L~~lH~~giiHrDlkp~NILl-~~~~~~liDFGla~~~ 477 (535)
T PRK09605 413 IVMEYIGGKDLKDVLEGNPELVRKVGEIVAKLHKAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKYS 477 (535)
T ss_pred EEEEecCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCChHHEEE-ECCcEEEEeCcccccC
Confidence 99999999999887631 1123356999999999 5789999999999864
|
|
| >PRK14879 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=119.49 Aligned_cols=118 Identities=16% Similarity=0.224 Sum_probs=92.0
Q ss_pred ceeecccCeEEEEEEeCCCceEEEEecCCCCCCch----HHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEe
Q 042735 427 YCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQ----IADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEY 502 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~----~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey 502 (667)
+.||+|++|.||+|.. .+..++||+......... ......+.+|++++..++|+++.....++.+....++||||
T Consensus 2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~ 80 (211)
T PRK14879 2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY 80 (211)
T ss_pred cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence 4689999999999987 556688887654322111 11234688999999999999998888887778889999999
Q ss_pred cCCCChHHHhcccc--------------------CCcccccccCCeeecCCCceEEeccccccc
Q 042735 503 LKRGSLATNLSNDA--------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKF 546 (667)
Q Consensus 503 ~~~g~L~~~l~~~~--------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~ 546 (667)
++|++|.+.+.... ...|.|++|+||+++ ++.++|+|||.++.
T Consensus 81 ~~G~~L~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~ 143 (211)
T PRK14879 81 IEGEPLKDLINSNGMEELELSREIGRLVGKLHSAGIIHGDLTTSNMILS-GGKIYLIDFGLAEF 143 (211)
T ss_pred eCCcCHHHHHHhccHHHHHHHHHHHHHHHHHHhCCcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence 99999987764321 122449999999999 88999999999875
|
|
| >cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-11 Score=118.26 Aligned_cols=122 Identities=20% Similarity=0.165 Sum_probs=88.7
Q ss_pred CcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCch------------------HHhHHHHHHHHHHHHhcCCC--C
Q 042735 423 FDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQ------------------IADQKEFFAEIEALTKIRHR--N 482 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~------------------~~~~~~~~~E~~~l~~l~H~--n 482 (667)
|...+.||+|+||.||+|..++++.+|||++........ ......+.+|..++.++.|+ .
T Consensus 17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~ 96 (198)
T cd05144 17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFP 96 (198)
T ss_pred hhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCC
Confidence 556688999999999999988899999998654221000 00112467899999999887 4
Q ss_pred eeEEEEEEEeCCceEEEEEecCCCChHHHhc-cc-----------------cCCcccccccCCeeecCCCceEEeccccc
Q 042735 483 IVKFYGFCSHARHSILIYEYLKRGSLATNLS-ND-----------------AAAEELDISSKNVLLDLEHKAHVSDFGIA 544 (667)
Q Consensus 483 iv~~~g~~~~~~~~~lv~ey~~~g~L~~~l~-~~-----------------~~~~~~dlk~~NiLld~~~~~kl~DFGla 544 (667)
+.+.++. ...++||||+++++|..... .. ....|.|+||+||++++++.++|+|||.+
T Consensus 97 v~~~~~~----~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~~~~~~~liDfg~~ 172 (198)
T cd05144 97 VPKPIDW----NRHAVVMEYIDGVELYRVRVLEDPEEVLDEILEEIVKAYKHGIIHGDLSEFNILVDDDEKIYIIDWPQM 172 (198)
T ss_pred CCceeec----CCceEEEEEeCCcchhhccccccHHHHHHHHHHHHHHHHHCCCCcCCCCcccEEEcCCCcEEEEECCcc
Confidence 4555442 45689999999999866543 11 11224499999999999999999999999
Q ss_pred cccc
Q 042735 545 KFLK 548 (667)
Q Consensus 545 ~~~~ 548 (667)
....
T Consensus 173 ~~~~ 176 (198)
T cd05144 173 VSTD 176 (198)
T ss_pred ccCC
Confidence 6543
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom |
| >KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-12 Score=142.18 Aligned_cols=214 Identities=21% Similarity=0.241 Sum_probs=125.6
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+.++.|..|+||.||.++++. .+++|. ++++.. -+.|- ++.....|.+| |=|... +=.
T Consensus 83 ~df~~IklisngAygavylvrh~~trqrfa~-kiNkq~---------lilRn--ilt~a~npfvv---gDc~tl---lk~ 144 (1205)
T KOG0606|consen 83 SDFNTIKLISNGAYGAVYLVRHKETRQRFAM-KINKQN---------LILRN--ILTFAGNPFVV---GDCATL---LKN 144 (1205)
T ss_pred cccceeEeeccCCCCceeeeeccccccchhh-cccccc---------hhhhc--cccccCCccee---chhhhh---ccc
Confidence 588999999999999999998765 456777 443311 01111 44555566666 222110 000
Q ss_pred EEecCCCC-hH-HHhccccCCcccccccCCeeecCCCceEEecccccccccCCC---------------CCccccccccc
Q 042735 500 YEYLKRGS-LA-TNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS---------------SNWSALVGTYR 562 (667)
Q Consensus 500 ~ey~~~g~-L~-~~l~~~~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~---------------~~~~~~~Gt~~ 562 (667)
+--.+.+- |+ ++++ .....+.|+||+|.+|..=|++|++|||+++..--.. -....++|||.
T Consensus 145 ~g~lPvdmvla~Eylh-~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPe 223 (1205)
T KOG0606|consen 145 IGPLPVDMVLAVEYLH-SYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPE 223 (1205)
T ss_pred CCCCcchhhHHhHhhc-cCCeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCcc
Confidence 00000000 11 1122 2345567999999999999999999999998531100 01134699999
Q ss_pred ccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHh
Q 042735 563 YVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFS 636 (667)
Q Consensus 563 y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (667)
|.||| |...+|+|++|+|+||.+.|+.||........ ....+.+. ..++...+.. ..+..+++.+
T Consensus 224 yiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpeel----fg~visd~--i~wpE~dea~---p~Ea~dli~~ 294 (1205)
T KOG0606|consen 224 YIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEEL----FGQVISDD--IEWPEEDEAL---PPEAQDLIEQ 294 (1205)
T ss_pred ccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHHH----Hhhhhhhh--ccccccCcCC---CHHHHHHHHH
Confidence 99999 67789999999999999999999764311000 00000000 0111111111 1123345556
Q ss_pred ccccCCCCC---CCHHHHHHHHHHhhhhh
Q 042735 637 CLDVSPESR---PTMQTITQQLLFSLVYF 662 (667)
Q Consensus 637 Cl~~~p~~R---Pt~~ev~~~l~~~~~~~ 662 (667)
-++.+|..| +.+-+|.++-+|..-.|
T Consensus 295 LL~qnp~~Rlgt~ga~evk~h~ff~~LDw 323 (1205)
T KOG0606|consen 295 LLRQNPLCRLGTGGALEVKQHGFFQLLDW 323 (1205)
T ss_pred HHHhChHhhcccchhhhhhhccceeeccc
Confidence 788899888 45566666666654433
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-13 Score=142.34 Aligned_cols=171 Identities=26% Similarity=0.393 Sum_probs=96.2
Q ss_pred CcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcccc
Q 042735 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENN 84 (667)
Q Consensus 5 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n 84 (667)
-...||+.|++. ++|..++.+..|+.|.|.+|.|. .+|..+++|..|.+|||+.|+++ .+|..+..+-|++|-+++|
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVSNN 153 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEecC
Confidence 344566666665 35666666666777777777665 56666777777777777777665 5566666666666666666
Q ss_pred cccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCc
Q 042735 85 HFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIAS 164 (667)
Q Consensus 85 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 164 (667)
+++ .+| ..++.++.|..|+.+.|++. .+|..++.+.+|+.|.+..|++. .+|.
T Consensus 154 kl~-~lp------------------------~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~ 206 (722)
T KOG0532|consen 154 KLT-SLP------------------------EEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE 206 (722)
T ss_pred ccc-cCC------------------------cccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence 664 334 44444445555555555543 34444555555555555555543 2333
Q ss_pred cCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCccc
Q 042735 165 NWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIV 207 (667)
Q Consensus 165 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 207 (667)
.+. .-.|..||++.|++. .+|..|.+|+.|++|-|.+|-+.
T Consensus 207 El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 207 ELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 333 223555555555554 35555555555555555555543
|
|
| >TIGR03724 arch_bud32 Kae1-associated kinase Bud32 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-11 Score=117.39 Aligned_cols=117 Identities=15% Similarity=0.248 Sum_probs=88.6
Q ss_pred eeecccCeEEEEEEeCCCceEEEEecCCCCCCc----hHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEec
Q 042735 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSD----QIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYL 503 (667)
Q Consensus 428 ~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~----~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~ 503 (667)
.||+|+||.||+|.+ ++..+++|+........ .....+++.+|++++..++|+++.....++......++||||+
T Consensus 1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~ 79 (199)
T TIGR03724 1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI 79 (199)
T ss_pred CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence 379999999999986 45678888754322111 1122356889999999999987666666666777789999999
Q ss_pred CCCChHHHhcccc-----------------CCcccccccCCeeecCCCceEEeccccccc
Q 042735 504 KRGSLATNLSNDA-----------------AAEELDISSKNVLLDLEHKAHVSDFGIAKF 546 (667)
Q Consensus 504 ~~g~L~~~l~~~~-----------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~ 546 (667)
+|++|.+.+.... ...|.|++|.||+++ ++.+++.|||+++.
T Consensus 80 ~g~~l~~~~~~~~~~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~ 138 (199)
T TIGR03724 80 EGKPLKDVIEEGNDELLREIGRLVGKLHKAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKY 138 (199)
T ss_pred CCccHHHHHhhcHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence 9999987764421 112449999999999 89999999999875
|
Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine. |
| >PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-11 Score=120.76 Aligned_cols=200 Identities=20% Similarity=0.223 Sum_probs=111.9
Q ss_pred cCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCC-----------CCeeEEEEEEE
Q 042735 424 DAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH-----------RNIVKFYGFCS 491 (667)
Q Consensus 424 ~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H-----------~niv~~~g~~~ 491 (667)
.....||.|+++.||.+... +++.+|||++..... ......+++.+|.-....+.+ .-++.+ +...
T Consensus 15 ~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~-~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~-d~~~ 92 (288)
T PF14531_consen 15 VRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPAD-ASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPL-DLLR 92 (288)
T ss_dssp EEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESST-THTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---S-EEEE
T ss_pred EEccccccCCceEEEEEEEccCCceEEEEEEecccc-cchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeee-EEEE
Confidence 45678999999999999874 588999998754432 233345677777755544333 222222 2111
Q ss_pred ---------eCC--------ceEEEEEecCCCChHHHhcc---cc----------------------------CCccccc
Q 042735 492 ---------HAR--------HSILIYEYLKRGSLATNLSN---DA----------------------------AAEELDI 523 (667)
Q Consensus 492 ---------~~~--------~~~lv~ey~~~g~L~~~l~~---~~----------------------------~~~~~dl 523 (667)
... ..+++|.-+ .++|.+.+.. .. ..-|-||
T Consensus 93 i~~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~GlVHgdi 171 (288)
T PF14531_consen 93 IPGKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYGLVHGDI 171 (288)
T ss_dssp ETTS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEEEST-
T ss_pred EcCCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcceEeccc
Confidence 111 224566655 4577654321 10 0112399
Q ss_pred ccCCeeecCCCceEEecccccccccCCCCCcccccccccccCCC--------------CCCCchHHHHHHHHHHHHhCCC
Q 042735 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD--------------YRKKCDVYSFRVLALEVIKGKH 589 (667)
Q Consensus 524 k~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE--------------~~~~~DV~sfGvvl~ElltG~~ 589 (667)
||+|++++.+|.++|+||+........ ......+.+|.+|| |+.+.|.|++|+++|.|+.|+.
T Consensus 172 ~~~nfll~~~G~v~Lg~F~~~~r~g~~---~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~l 248 (288)
T PF14531_consen 172 KPENFLLDQDGGVFLGDFSSLVRAGTR---YRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRL 248 (288)
T ss_dssp SGGGEEE-TTS-EEE--GGGEEETTEE---EEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-
T ss_pred ceeeEEEcCCCCEEEcChHHHeecCce---eeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccC
Confidence 999999999999999999877643221 11123456788887 3557799999999999999999
Q ss_pred CCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCC
Q 042735 590 PRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESR 645 (667)
Q Consensus 590 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~R 645 (667)
|++.......... ..-+ +.. -...+..++...++.+|++|
T Consensus 249 Pf~~~~~~~~~~~-------~f~~------C~~---~Pe~v~~LI~~lL~~~~~~R 288 (288)
T PF14531_consen 249 PFGLSSPEADPEW-------DFSR------CRD---MPEPVQFLIRGLLQRNPEDR 288 (288)
T ss_dssp STCCCGGGSTSGG-------GGTT------SS------HHHHHHHHHHT-SSGGGS
T ss_pred CCCCCCccccccc-------cchh------cCC---cCHHHHHHHHHHccCCcccC
Confidence 9875432211110 0000 111 11234556668899999887
|
|
| >KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4e-11 Score=116.50 Aligned_cols=166 Identities=21% Similarity=0.296 Sum_probs=123.3
Q ss_pred CCcCcceeecccCeEEEEEE-eCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~lv 499 (667)
.|.+.+.||+|+||..+.|. +-.++.||||--...... -+...|.+.-+.|. .+.|-..|-|..++.+-.||
T Consensus 29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~A------PQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLV 102 (449)
T KOG1165|consen 29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSEA------PQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILV 102 (449)
T ss_pred cceeccccccCcceeeecccccccCceEEEEeccccCCc------chHHHHHHHHHHHcCCCCCCceeeeccccchhhhh
Confidence 67888999999999999996 678899999965432211 12445555555554 68999999888889889999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCC-----CceEEecccccccccC
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLE-----HKAHVSDFGIAKFLKP 549 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~-----~~~kl~DFGla~~~~~ 549 (667)
+|.+ |-||.+.+.-.. .....||||+|.||... ..+.+.|||+|+...+
T Consensus 103 idLL-GPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrD 181 (449)
T KOG1165|consen 103 IDLL-GPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRD 181 (449)
T ss_pred hhhh-CcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhhhcC
Confidence 9976 567766543110 01123999999999754 3588999999997654
Q ss_pred CCC-------CcccccccccccCC------CCCCCchHHHHHHHHHHHHhCCCCCCCC
Q 042735 550 DSS-------NWSALVGTYRYVAP------DYRKKCDVYSFRVLALEVIKGKHPRGFV 594 (667)
Q Consensus 550 ~~~-------~~~~~~Gt~~y~aP------E~~~~~DV~sfGvvl~ElltG~~p~~~~ 594 (667)
... ......||.+||+= |...+-|.=|+|=++.-.+.|..||...
T Consensus 182 p~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGL 239 (449)
T KOG1165|consen 182 PKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGL 239 (449)
T ss_pred ccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccc
Confidence 321 12456899999986 4667889999999999999999998743
|
|
| >KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.6e-11 Score=118.63 Aligned_cols=164 Identities=23% Similarity=0.300 Sum_probs=99.9
Q ss_pred cCCCCeeEEEEEEEe---------------------------CCceEEEEEecCCCChHHHhcccc--------------
Q 042735 478 IRHRNIVKFYGFCSH---------------------------ARHSILIYEYLKRGSLATNLSNDA-------------- 516 (667)
Q Consensus 478 l~H~niv~~~g~~~~---------------------------~~~~~lv~ey~~~g~L~~~l~~~~-------------- 516 (667)
-+|||||++.++|.+ +...|+||.-.+. +|++++....
T Consensus 273 a~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~~~s~r~~~~~laQlL 351 (598)
T KOG4158|consen 273 AKHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTRHRSYRTGRVILAQLL 351 (598)
T ss_pred CCCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcCCCchHHHHHHHHHHH
Confidence 369999999998753 3456777754332 5555543221
Q ss_pred ---------CCcccccccCCeee--cCCCc--eEEecccccccccCC------CCCcccccccccccCCCC---------
Q 042735 517 ---------AAEELDISSKNVLL--DLEHK--AHVSDFGIAKFLKPD------SSNWSALVGTYRYVAPDY--------- 568 (667)
Q Consensus 517 ---------~~~~~dlk~~NiLl--d~~~~--~kl~DFGla~~~~~~------~~~~~~~~Gt~~y~aPE~--------- 568 (667)
...|.|+|++|||+ |+|+. ..|+|||.+-.-+.. .+..-...|.-.-||||.
T Consensus 352 Eav~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~PGp~a 431 (598)
T KOG4158|consen 352 EAVTHLHKHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVPGPNA 431 (598)
T ss_pred HHHHHHHHccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcCCCCce
Confidence 12345999999999 44444 578999987432211 111112346678899993
Q ss_pred ---CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCC
Q 042735 569 ---RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESR 645 (667)
Q Consensus 569 ---~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~R 645 (667)
-.|+|.|+.|-+.||+++...||-....+.... . ..++--=|.++...+. .+.+++..-++.||.+|
T Consensus 432 vvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~--r--~Yqe~qLPalp~~vpp------~~rqlV~~lL~r~pskR 501 (598)
T KOG4158|consen 432 VVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDT--R--TYQESQLPALPSRVPP------VARQLVFDLLKRDPSKR 501 (598)
T ss_pred eeccchhhhhhhhhhHHHHhccCCcccccchheech--h--hhhhhhCCCCcccCCh------HHHHHHHHHhcCCcccc
Confidence 258999999999999999999975311111100 0 0111111333333333 23355667799999999
Q ss_pred CCHHHHH
Q 042735 646 PTMQTIT 652 (667)
Q Consensus 646 Pt~~ev~ 652 (667)
|+..-..
T Consensus 502 vsp~iAA 508 (598)
T KOG4158|consen 502 VSPNIAA 508 (598)
T ss_pred CCccHHH
Confidence 9965443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.2e-13 Score=137.90 Aligned_cols=179 Identities=35% Similarity=0.460 Sum_probs=107.9
Q ss_pred CCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEc
Q 042735 98 GALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177 (667)
Q Consensus 98 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 177 (667)
.--...+++.|++. .+|..+..+-.|+.|.|..|.+. .+|..++++..|++|||+.|++. .+|..++.|+ |+.|.+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 33444566666665 45666666666666666666665 55666666666777777766664 4455555544 666666
Q ss_pred cCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCcc
Q 042735 178 SMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL 257 (667)
Q Consensus 178 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 257 (667)
++|+++ .+|..++.+.+|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..| .|..||+|.|+++.
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~- 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISY- 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceee-
Confidence 666665 45566666666666666666654 34555666666666666666654 455555533 45666666666653
Q ss_pred chhhhhcccCCCeecCCCccCccccchhh
Q 042735 258 IPESLGNLLKLHYLDLSKYQFIQELPKEL 286 (667)
Q Consensus 258 ~p~~~~~l~~L~~L~ls~n~~~~~~p~~l 286 (667)
+|-.|.+|..|++|-|.+|.+ +.-|..+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPL-qSPPAqI 253 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPL-QSPPAQI 253 (722)
T ss_pred cchhhhhhhhheeeeeccCCC-CCChHHH
Confidence 466666666666666655553 3444443
|
|
| >KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-11 Score=111.90 Aligned_cols=175 Identities=22% Similarity=0.268 Sum_probs=127.4
Q ss_pred HHHHHHHHcCCcCcceeecccCeEEEEEE-eCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCC-CCeeEEEEEE
Q 042735 413 YVEIIRAINDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH-RNIVKFYGFC 490 (667)
Q Consensus 413 ~~~~~~~~~~f~~~~~lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H-~niv~~~g~~ 490 (667)
.++++.+ ..|...+.||+|+||.+|.|. ..+|+.||+|.-..... .-+...|.++-+.++| ..|..++-|.
T Consensus 8 ~~~~iv~-gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~------hpqL~yEskvY~iL~~g~GiP~i~~y~ 80 (341)
T KOG1163|consen 8 LEELIVG-GKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAK------HPQLLYESKVYRILQGGVGIPHIRHYG 80 (341)
T ss_pred hhhheec-cceEEEEeecCCchhheeeeeeccCCceEEEEeecccCC------CcchhHHHHHHHHhccCCCCchhhhhc
Confidence 3444433 578889999999999999996 57899999997544321 1246678888888875 5566666777
Q ss_pred EeCCceEEEEEecCCCChHHHhccc-------------------------cCCcccccccCCeeecC---CCceEEeccc
Q 042735 491 SHARHSILIYEYLKRGSLATNLSND-------------------------AAAEELDISSKNVLLDL---EHKAHVSDFG 542 (667)
Q Consensus 491 ~~~~~~~lv~ey~~~g~L~~~l~~~-------------------------~~~~~~dlk~~NiLld~---~~~~kl~DFG 542 (667)
.+...-.+|||.. |.+|.+.+.-. ....|.||||+|.|..- ...+.++|||
T Consensus 81 ~e~~ynvlVMdLL-GPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFG 159 (341)
T KOG1163|consen 81 TEKDYNVLVMDLL-GPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFG 159 (341)
T ss_pred cccccceeeeecc-CccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHhhccccccCCccceeeccccccceEEEEecc
Confidence 7888889999976 56776654210 11234599999999963 3467899999
Q ss_pred ccccccCCCCC-------cccccccccccCC------CCCCCchHHHHHHHHHHHHhCCCCCCCCc
Q 042735 543 IAKFLKPDSSN-------WSALVGTYRYVAP------DYRKKCDVYSFRVLALEVIKGKHPRGFVS 595 (667)
Q Consensus 543 la~~~~~~~~~-------~~~~~Gt~~y~aP------E~~~~~DV~sfGvvl~ElltG~~p~~~~~ 595 (667)
+|+...+.... -+...||..|.+- |...+-|+=|.|-+|.-.-.|..||....
T Consensus 160 LaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglk 225 (341)
T KOG1163|consen 160 LAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLK 225 (341)
T ss_pred chhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccc
Confidence 99976543211 2346799999764 45677899999999999999999987544
|
|
| >smart00090 RIO RIO-like kinase | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.5e-11 Score=115.29 Aligned_cols=121 Identities=20% Similarity=0.203 Sum_probs=85.6
Q ss_pred CcCcceeecccCeEEEEEE--eCCCceEEEEecCCCCCCch------------------H--HhHHHHHHHHHHHHhcCC
Q 042735 423 FDAKYCIGSGRHGSVYRAE--LPSKEFLAVKKFNSPLPSDQ------------------I--ADQKEFFAEIEALTKIRH 480 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~--~~~~~~~avk~~~~~~~~~~------------------~--~~~~~~~~E~~~l~~l~H 480 (667)
|+..+.||+|+||.||+|. ..+|..||||.+........ . .....+.+|++.+.++.|
T Consensus 30 ~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~ 109 (237)
T smart00090 30 SAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYE 109 (237)
T ss_pred HHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5567889999999999998 56889999998864321100 0 012346789999999986
Q ss_pred C--CeeEEEEEEEeCCceEEEEEecCCCChHHHhcc------------------------ccC-CcccccccCCeeecCC
Q 042735 481 R--NIVKFYGFCSHARHSILIYEYLKRGSLATNLSN------------------------DAA-AEELDISSKNVLLDLE 533 (667)
Q Consensus 481 ~--niv~~~g~~~~~~~~~lv~ey~~~g~L~~~l~~------------------------~~~-~~~~dlk~~NiLld~~ 533 (667)
. .+.+++++ ...++||||++++++...... ... ..|.|+||+||+++ +
T Consensus 110 ~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~-~ 184 (237)
T smart00090 110 AGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLYKEGELVHGDLSEYNILVH-D 184 (237)
T ss_pred cCCCCCeeeEe----cCceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHHhcCCEEeCCCChhhEEEE-C
Confidence 3 34444443 235899999999887543211 011 34559999999999 8
Q ss_pred CceEEeccccccccc
Q 042735 534 HKAHVSDFGIAKFLK 548 (667)
Q Consensus 534 ~~~kl~DFGla~~~~ 548 (667)
+.++|+|||.++...
T Consensus 185 ~~i~LiDFg~a~~~~ 199 (237)
T smart00090 185 GKVVIIDVSQSVELD 199 (237)
T ss_pred CCEEEEEChhhhccC
Confidence 899999999987543
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.9e-11 Score=127.81 Aligned_cols=200 Identities=32% Similarity=0.453 Sum_probs=137.1
Q ss_pred EEEcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCC-CCcEEEccCCccccccchhhhcCCCCCEEECcCC
Q 042735 78 VLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCP-NLVRISLEGNNMRGTISEAFGIYLNLTFLDISDN 156 (667)
Q Consensus 78 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 156 (667)
.+++..|.+.... ..+.....++.|++..|.+.. +|.....+. +|+.|++++|.+. .++..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4566666653222 223334567777777777764 344455553 7888888888876 34456777888888888888
Q ss_pred ccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcc
Q 042735 157 NFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPS 236 (667)
Q Consensus 157 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 236 (667)
++. .+|...+.++.|+.|++++|++. .+|..+..+..|++|++++|... ..+..+..+.++..|.+.+|++. .++.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 775 44544446778888888888886 45555555666888888888432 34556777888888888888765 3466
Q ss_pred cccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhh
Q 042735 237 EIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL 286 (667)
Q Consensus 237 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l 286 (667)
.++.+++|+.|++++|.++...+ ++.+.+|+.|++++|.+....|...
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 77788888888888888876533 7778888888888888776666543
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.2e-11 Score=127.60 Aligned_cols=200 Identities=38% Similarity=0.543 Sum_probs=158.2
Q ss_pred EEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCC-CCCEEECcCCccCCccCccCCCCCCCCEEEccCC
Q 042735 102 RVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYL-NLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180 (667)
Q Consensus 102 ~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 180 (667)
.+.+..|.+.... ..+..++.++.|++.+|.++. ++.....+. +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 5677777764332 335566889999999999984 555566664 9999999999985 55567889999999999999
Q ss_pred cCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchh
Q 042735 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPE 260 (667)
Q Consensus 181 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 260 (667)
++.. +|...+.++.|+.|++++|++. .+|.....+..|+.|.+++|.+. ..+..+..+.++..|.+.+|++... +.
T Consensus 174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cc
Confidence 9984 5555558889999999999987 45665566677999999999643 4667788899999999999998753 77
Q ss_pred hhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCcCcccc
Q 042735 261 SLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQI 310 (667)
Q Consensus 261 ~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ip~~~ 310 (667)
.++.++.|+.|++++|++.. ++. ++.+.+|+.|++++|.+....|...
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred hhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchhhh
Confidence 88888999999999998654 444 8889999999999999987776544
|
|
| >KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.4e-12 Score=139.52 Aligned_cols=226 Identities=21% Similarity=0.272 Sum_probs=155.2
Q ss_pred CCcCcceeecccCeEEEEEEeCC--CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPS--KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~--~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~l 498 (667)
.|...+.||+|+|+.|-...... ...+|+|.+.... ...........|..+-..+. |+|++++++.....+..++
T Consensus 21 ~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~--~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~ 98 (601)
T KOG0590|consen 21 QYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPP--KSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLL 98 (601)
T ss_pred cccccccccccccchhhhhhhcCCCcceeeccCCCCCC--CccchhhhcCccccccccccccccccccCCccCCCccccc
Confidence 34555669999999998876533 3446666554432 11222334456777777777 9999999999999999999
Q ss_pred EEEecCCCChHHHh-cccc--------------------------CCcccccccCCeeecCCC-ceEEecccccccccC-
Q 042735 499 IYEYLKRGSLATNL-SNDA--------------------------AAEELDISSKNVLLDLEH-KAHVSDFGIAKFLKP- 549 (667)
Q Consensus 499 v~ey~~~g~L~~~l-~~~~--------------------------~~~~~dlk~~NiLld~~~-~~kl~DFGla~~~~~- 549 (667)
+.||..+|++...+ ..+. ..-+.|+||+|.+++..+ ..|++|||+|.....
T Consensus 99 ~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~ 178 (601)
T KOG0590|consen 99 SLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDESGSALKIADFGLATAYRNK 178 (601)
T ss_pred ccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcccccccCCCCCccchhccCCCcccCCCchhhcccccc
Confidence 99999999998777 3221 111349999999999999 999999999987654
Q ss_pred CCC--Ccccccc-cccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCC---C
Q 042735 550 DSS--NWSALVG-TYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPR---L 616 (667)
Q Consensus 550 ~~~--~~~~~~G-t~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~ 616 (667)
... .....+| ++.|+|||. ....|+||.|+++.-+++|..||+......... ....... -
T Consensus 179 ~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~-------~~~~~~~~~~~ 251 (601)
T KOG0590|consen 179 NGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRY-------SSWKSNKGRFT 251 (601)
T ss_pred CCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccccccccccc-------eeecccccccc
Confidence 222 1234578 999999993 346899999999999999999987443222110 0111110 0
Q ss_pred CCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..+... ......++..+++..+|..|.+.+++....+...
T Consensus 252 ~~~~~~---~~~~~~~~l~k~l~~~~~~r~s~~~~~~d~~~~~ 291 (601)
T KOG0590|consen 252 QLPWNS---ISDQAHDLLHKILKENPSNRLSIEELKLDNWLSS 291 (601)
T ss_pred cCcccc---CChhhhhcccccccCCchhccccccccccccccc
Confidence 111111 1113445556788899999999999887766654
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-10 Score=131.03 Aligned_cols=113 Identities=34% Similarity=0.549 Sum_probs=100.7
Q ss_pred CcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCC
Q 042735 195 TLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274 (667)
Q Consensus 195 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls 274 (667)
.++.|+|++|.+.|.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCccccchhhhcC-CCCCEEECcCCCCCCcCc
Q 042735 275 KYQFIQELPKELGKL-VQLSELELSHNFLGREIP 307 (667)
Q Consensus 275 ~n~~~~~~p~~l~~l-~~L~~L~l~~n~l~~~ip 307 (667)
+|++.+.+|..++.+ .++..+++.+|......|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999988764 467889999987544333
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-10 Score=130.34 Aligned_cols=94 Identities=35% Similarity=0.531 Sum_probs=90.1
Q ss_pred ccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECc
Q 042735 219 SLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELS 298 (667)
Q Consensus 219 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~ 298 (667)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|++.+.+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCcccccC
Q 042735 299 HNFLGREIPSQICS 312 (667)
Q Consensus 299 ~n~l~~~ip~~~~~ 312 (667)
+|.+.+.+|..+..
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99999999988765
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-11 Score=123.64 Aligned_cols=208 Identities=25% Similarity=0.239 Sum_probs=119.2
Q ss_pred CCCCcEEeccCCcCcCCCC-ccccCCCCCCEEEccCccccccCC--ccccCCCCCCeeeccccccceeCCCCCc--cccc
Q 042735 2 LTNLRELHLRDNYLTGLIP-TETWNLKSLVKLGLGGNQFRGSLP--SSVGNLSSLRYLFLFENNLSGSIPPSVG--NLML 76 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~~~L 76 (667)
+.+|+...|.+..+..... .....|++++.|||++|-|..+.| .-...|++|+.|+|+.|++......... ..+|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 4556666666666643221 234466677777777776654322 2234566677777776666421111111 1234
Q ss_pred CEEEcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCC
Q 042735 77 TVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDN 156 (667)
Q Consensus 77 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 156 (667)
+.|.|+.|.++.. .+..++..+|+|+.|+|..|..-..-......+..|+.|||++|
T Consensus 200 K~L~l~~CGls~k-----------------------~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N 256 (505)
T KOG3207|consen 200 KQLVLNSCGLSWK-----------------------DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN 256 (505)
T ss_pred heEEeccCCCCHH-----------------------HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC
Confidence 5555555544311 22334556677777777777533344445566677788888877
Q ss_pred ccCCcc-CccCCCCCCCCEEEccCCcCCCC-cCcc-----ccCCCCcCeeeccCCccccc-CCccccCCcccceeecccc
Q 042735 157 NFFGEI-ASNWGKCPKLSTLNVSMNNITRS-IPLE-----IGNLSTLNEFDLSLNHIVGK-IPKEFGKLNSLTKLILRGN 228 (667)
Q Consensus 157 ~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~p~~-----~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n 228 (667)
.+.... -...+.++.|+.|+++.|.+... .|.. ....++|+.|+++.|++... .-..+..+++|+.|....|
T Consensus 257 ~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 257 NLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 764322 23456777788888887777643 2222 24567888888888887421 1123455677777777778
Q ss_pred cccc
Q 042735 229 QLIG 232 (667)
Q Consensus 229 ~l~~ 232 (667)
.++.
T Consensus 337 ~ln~ 340 (505)
T KOG3207|consen 337 YLNK 340 (505)
T ss_pred cccc
Confidence 7764
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-11 Score=114.63 Aligned_cols=135 Identities=29% Similarity=0.285 Sum_probs=99.3
Q ss_pred hhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcc
Q 042735 140 EAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNS 219 (667)
Q Consensus 140 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 219 (667)
.....+..|+.||||+|.|. .+.++..-+|+++.|++++|.+... ..+..+++|+.||||+|.++. +..+=..|.+
T Consensus 278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGN 353 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGN 353 (490)
T ss_pred EecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcC
Confidence 33444556778888888774 5666777778888888888888643 237778888889999888763 4444456778
Q ss_pred cceeecccccccccCcccccCCCCCCeeeccCCcCCccc-hhhhhcccCCCeecCCCccCcc
Q 042735 220 LTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLI-PESLGNLLKLHYLDLSKYQFIQ 280 (667)
Q Consensus 220 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~ls~n~~~~ 280 (667)
++.|.|+.|.+. .-+.+++|-+|..||+++|++...- -..+++++.|+++.|.+|.+.+
T Consensus 354 IKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 354 IKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred EeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 889999999874 2346778888999999999986531 3467888999999999888654
|
|
| >cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.5e-10 Score=103.29 Aligned_cols=114 Identities=17% Similarity=0.109 Sum_probs=90.0
Q ss_pred cceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCC--CCeeEEEEEEEeCCceEEEEEec
Q 042735 426 KYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH--RNIVKFYGFCSHARHSILIYEYL 503 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H--~niv~~~g~~~~~~~~~lv~ey~ 503 (667)
.+.+|+|.++.||++...+ ..+++|....... ...+.+|+.++..++| +++++++++....+..+++|||+
T Consensus 3 ~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~------~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~ 75 (155)
T cd05120 3 IKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK------GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWI 75 (155)
T ss_pred ceecccccccceEEEEecC-CeEEEEecCCCCc------hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEec
Confidence 4678999999999999865 6789998754321 3468899999999987 59999999988888899999999
Q ss_pred CCCChHHH-----h-------------ccc--cCCcccccccCCeeecCCCceEEeccccccc
Q 042735 504 KRGSLATN-----L-------------SND--AAAEELDISSKNVLLDLEHKAHVSDFGIAKF 546 (667)
Q Consensus 504 ~~g~L~~~-----l-------------~~~--~~~~~~dlk~~NiLld~~~~~kl~DFGla~~ 546 (667)
+++.+... . +.. ....|.|++|+||+++..+.+++.|||.++.
T Consensus 76 ~g~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~ 138 (155)
T cd05120 76 EGETLDEVSEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY 138 (155)
T ss_pred CCeecccCCHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence 99877421 0 110 0123459999999999989999999999875
|
The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves |
| >PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=106.49 Aligned_cols=121 Identities=15% Similarity=0.209 Sum_probs=87.6
Q ss_pred cceee-cccCeEEEEEEeCCCceEEEEecCCCCC-----C----chHHhHHHHHHHHHHHHhcCCCCe--eEEEEEEEeC
Q 042735 426 KYCIG-SGRHGSVYRAELPSKEFLAVKKFNSPLP-----S----DQIADQKEFFAEIEALTKIRHRNI--VKFYGFCSHA 493 (667)
Q Consensus 426 ~~~lg-~g~~g~vy~~~~~~~~~~avk~~~~~~~-----~----~~~~~~~~~~~E~~~l~~l~H~ni--v~~~g~~~~~ 493 (667)
...|| .|+.|+||++... +..++||.+..... . ........+.+|++++.+++|++| ++.+++....
T Consensus 36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~ 114 (239)
T PRK01723 36 ARVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR 114 (239)
T ss_pred CceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence 46788 8999999999885 66788887743210 0 011233568899999999998885 6777765432
Q ss_pred C----ceEEEEEecCC-CChHHHhcccc-------------------CCcccccccCCeeecCCCceEEecccccccc
Q 042735 494 R----HSILIYEYLKR-GSLATNLSNDA-------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFL 547 (667)
Q Consensus 494 ~----~~~lv~ey~~~-g~L~~~l~~~~-------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~ 547 (667)
. ..++||||+++ .+|.+.+.... ...|.|+||.|||++.++.++|+|||.++..
T Consensus 115 ~~~~~~~~lV~e~l~G~~~L~~~l~~~~l~~~~~~~i~~~l~~lH~~GI~HrDlkp~NILv~~~~~v~LIDfg~~~~~ 192 (239)
T PRK01723 115 HGLFYRADILIERIEGARDLVALLQEAPLSEEQWQAIGQLIARFHDAGVYHADLNAHNILLDPDGKFWLIDFDRGELR 192 (239)
T ss_pred cCcceeeeEEEEecCCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHCCCCCCCCCchhEEEcCCCCEEEEECCCcccC
Confidence 2 23599999997 68877764322 1224499999999999999999999998763
|
|
| >TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.1e-10 Score=118.55 Aligned_cols=128 Identities=17% Similarity=0.175 Sum_probs=87.4
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchH------------------------------------Hh
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQI------------------------------------AD 464 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~------------------------------------~~ 464 (667)
..|+ .+.||+|++|+||+|++.+|+.||||+........-. ..
T Consensus 118 ~~fd-~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 196 (437)
T TIGR01982 118 AEFE-EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRR 196 (437)
T ss_pred hhCC-CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHH
Confidence 4455 3679999999999999999999999997643211000 00
Q ss_pred HHHHHHHHHHHHhcC----CCCeeEEEEEEEe-CCceEEEEEecCCCChHHHhcccc-----------------------
Q 042735 465 QKEFFAEIEALTKIR----HRNIVKFYGFCSH-ARHSILIYEYLKRGSLATNLSNDA----------------------- 516 (667)
Q Consensus 465 ~~~~~~E~~~l~~l~----H~niv~~~g~~~~-~~~~~lv~ey~~~g~L~~~l~~~~----------------------- 516 (667)
+-.|.+|++.+.+++ |.+-|.+-.++.+ ....++||||++|++|.+......
T Consensus 197 Eldf~~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~~~~~~~ia~~~~~~~l~ql~~~ 276 (437)
T TIGR01982 197 ELDLRREAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRD 276 (437)
T ss_pred HHCHHHHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 113566776666653 3334444444432 345789999999999876543210
Q ss_pred CCcccccccCCeeecCCCceEEecccccccccC
Q 042735 517 AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 517 ~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~ 549 (667)
..-|.|++|.||+++.++.+++.|||+++.+.+
T Consensus 277 g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~ 309 (437)
T TIGR01982 277 GFFHADLHPGNIFVLKDGKIIALDFGIVGRLSE 309 (437)
T ss_pred CceeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence 011339999999999999999999999987653
|
This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species. |
| >cd05119 RIO RIO kinase family, catalytic domain | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-09 Score=102.50 Aligned_cols=118 Identities=22% Similarity=0.214 Sum_probs=78.6
Q ss_pred cceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhH--------------------HHHHHHHHHHHhcCCCC--e
Q 042735 426 KYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQ--------------------KEFFAEIEALTKIRHRN--I 483 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~--------------------~~~~~E~~~l~~l~H~n--i 483 (667)
.+.||+|+||+||+|...+++.||||++............ .....|.+.+.++.+.. +
T Consensus 2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~ 81 (187)
T cd05119 2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV 81 (187)
T ss_pred CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence 3579999999999999888899999987643221111000 01135666677765443 4
Q ss_pred eEEEEEEEeCCceEEEEEecCCC-----ChHHHhc-------------------cccCCcccccccCCeeecCCCceEEe
Q 042735 484 VKFYGFCSHARHSILIYEYLKRG-----SLATNLS-------------------NDAAAEELDISSKNVLLDLEHKAHVS 539 (667)
Q Consensus 484 v~~~g~~~~~~~~~lv~ey~~~g-----~L~~~l~-------------------~~~~~~~~dlk~~NiLld~~~~~kl~ 539 (667)
.+.+++ ...++||||+++| .+.+... ......|.|+||+||+++ ++.++++
T Consensus 82 ~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~-~~~~~li 156 (187)
T cd05119 82 PKPIDL----NRHVLVMEFIGGDGIPAPRLKDVRLLEDPEELYDQILELMRKLYREAGLVHGDLSEYNILVD-DGKVYII 156 (187)
T ss_pred CceEec----CCCEEEEEEeCCCCccChhhhhhhhcccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE-CCcEEEE
Confidence 455543 2468999999994 3332211 102233569999999999 9999999
Q ss_pred ccccccccc
Q 042735 540 DFGIAKFLK 548 (667)
Q Consensus 540 DFGla~~~~ 548 (667)
|||.+....
T Consensus 157 Dfg~a~~~~ 165 (187)
T cd05119 157 DVPQAVEID 165 (187)
T ss_pred ECccccccc
Confidence 999997543
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct |
| >PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.9e-09 Score=112.67 Aligned_cols=128 Identities=16% Similarity=0.243 Sum_probs=89.5
Q ss_pred HcCCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCc----------------------------h--------H
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSD----------------------------Q--------I 462 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~----------------------------~--------~ 462 (667)
..+|+. +.||+|++|+||+|++++ |+.||||+........ . .
T Consensus 119 F~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l 197 (537)
T PRK04750 119 FDDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTL 197 (537)
T ss_pred HHhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHH
Confidence 456776 689999999999999987 9999999986432100 0 0
Q ss_pred HhHHHHHHHHHHHHhcC----CCCeeEEEEEEEe-CCceEEEEEecCCCChHHH--hcccc-------------------
Q 042735 463 ADQKEFFAEIEALTKIR----HRNIVKFYGFCSH-ARHSILIYEYLKRGSLATN--LSNDA------------------- 516 (667)
Q Consensus 463 ~~~~~~~~E~~~l~~l~----H~niv~~~g~~~~-~~~~~lv~ey~~~g~L~~~--l~~~~------------------- 516 (667)
..+-.|.+|++.+.+++ +.+.|.+-.++.+ ....++||||++|+.+.+. +....
T Consensus 198 ~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif 277 (537)
T PRK04750 198 HDELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVF 277 (537)
T ss_pred HHhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 00113556666665553 5556666565544 4567899999999999763 22211
Q ss_pred --CCcccccccCCeeecCCC----ceEEeccccccccc
Q 042735 517 --AAEELDISSKNVLLDLEH----KAHVSDFGIAKFLK 548 (667)
Q Consensus 517 --~~~~~dlk~~NiLld~~~----~~kl~DFGla~~~~ 548 (667)
..-|.|+||.||+++.++ .+++.|||++..+.
T Consensus 278 ~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~ 315 (537)
T PRK04750 278 RDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLN 315 (537)
T ss_pred hCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECC
Confidence 111349999999999988 99999999998654
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.8e-11 Score=117.88 Aligned_cols=205 Identities=22% Similarity=0.270 Sum_probs=138.3
Q ss_pred CCccEEEeeCcccccccC-ccCCCCCCCcEEEccCCcccccc--chhhhcCCCCCEEECcCCccCCccCcc-CCCCCCCC
Q 042735 98 GALERVIVGGNHFRGPIP-KCLRNCPNLVRISLEGNNMRGTI--SEAFGIYLNLTFLDISDNNFFGEIASN-WGKCPKLS 173 (667)
Q Consensus 98 ~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~L~~n~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~ 173 (667)
.+|+...+.+.......- .-...|++++.|+|+.|-+...- -.....+++|+.|+|+.|.+.-...+. -..+++|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 456666666665542211 24567888999999988776432 234567889999999999875333222 23578899
Q ss_pred EEEccCCcCCCC-cCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCc--ccccCCCCCCeeecc
Q 042735 174 TLNVSMNNITRS-IPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLP--SEIGSLTKLEFLNLS 250 (667)
Q Consensus 174 ~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls 250 (667)
.|.|+.|.++.. +......+|+|+.|+|..|...........-+..|+.|+|++|++.. .+ ...+.++.|+.|+++
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhcc
Confidence 999999988632 11224457899999999885333333445667889999999998763 33 356788999999999
Q ss_pred CCcCCcc-chhh-----hhcccCCCeecCCCccCccccc--hhhhcCCCCCEEECcCCCCCC
Q 042735 251 TNRFSSL-IPES-----LGNLLKLHYLDLSKYQFIQELP--KELGKLVQLSELELSHNFLGR 304 (667)
Q Consensus 251 ~N~l~~~-~p~~-----~~~l~~L~~L~ls~n~~~~~~p--~~l~~l~~L~~L~l~~n~l~~ 304 (667)
.+.+.++ .|+. ...+++|++|+++.|++.. ++ ..+..+.+|+.|.+..|++..
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhcccccccc
Confidence 9888754 2333 3457888999999888632 22 245566777777777787754
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.4e-11 Score=119.06 Aligned_cols=136 Identities=24% Similarity=0.271 Sum_probs=82.1
Q ss_pred CCCCCCEEEccCCcCCCC----cCccccCCCCcCeeeccCCccccc----CCccccCCcccceeeccccccccc----Cc
Q 042735 168 KCPKLSTLNVSMNNITRS----IPLEIGNLSTLNEFDLSLNHIVGK----IPKEFGKLNSLTKLILRGNQLIGH----LP 235 (667)
Q Consensus 168 ~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p 235 (667)
.-+.|+++..++|++... +...|...+.|+.+.+..|.+... +...|..+++|++|||.+|.++.. +-
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 345566666666665321 122344556677777777665321 123456677777777777776521 23
Q ss_pred ccccCCCCCCeeeccCCcCCccchhhh----h-cccCCCeecCCCccCccc----cchhhhcCCCCCEEECcCCCCC
Q 042735 236 SEIGSLTKLEFLNLSTNRFSSLIPESL----G-NLLKLHYLDLSKYQFIQE----LPKELGKLVQLSELELSHNFLG 303 (667)
Q Consensus 236 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~-~l~~L~~L~ls~n~~~~~----~p~~l~~l~~L~~L~l~~n~l~ 303 (667)
..+..+++|+.|+++++.+...-...| . ..++|+.|.+.+|.++.. +-..+...+.|..|+|++|.++
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 345566778888888777764432222 2 356788888888876532 2223456788888899998874
|
|
| >KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-09 Score=123.79 Aligned_cols=163 Identities=23% Similarity=0.314 Sum_probs=116.6
Q ss_pred HcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC---CCCeeEEEEEEEeCCce
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR---HRNIVKFYGFCSHARHS 496 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~---H~niv~~~g~~~~~~~~ 496 (667)
-..|.+...||+|+||+||+|...+++.||+|.-+.+..- +|.--.+++.||+ -+-|..+...+.-.+.-
T Consensus 697 ~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~W-------EfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S 769 (974)
T KOG1166|consen 697 GEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPW-------EFYICLQVMERLKPQMLPSIMHISSAHVFQNAS 769 (974)
T ss_pred ceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCce-------eeeehHHHHHhhchhhhcchHHHHHHHccCCcc
Confidence 3567788889999999999999888999999986544321 1222234455555 23444455555567778
Q ss_pred EEEEEecCCCChHHHhccccCC------------------------cccccccCCeeecC-------CCceEEecccccc
Q 042735 497 ILIYEYLKRGSLATNLSNDAAA------------------------EELDISSKNVLLDL-------EHKAHVSDFGIAK 545 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~~------------------------~~~dlk~~NiLld~-------~~~~kl~DFGla~ 545 (667)
++|+||.+.|+|.+.+...... .|-||||+|.||.. ...++|+|||.+-
T Consensus 770 ~lv~ey~~~Gtlld~~N~~~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~si 849 (974)
T KOG1166|consen 770 VLVSEYSPYGTLLDLINTNKVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSI 849 (974)
T ss_pred eeeeeccccccHHHhhccCCCCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccceEEEecccce
Confidence 8999999999999887643211 12399999999932 3458999999996
Q ss_pred cccC--CCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCC
Q 042735 546 FLKP--DSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKH 589 (667)
Q Consensus 546 ~~~~--~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~ 589 (667)
-+.. +.......++|-.+-.+| .+..+|-|.+.-+++-|+.|+.
T Consensus 850 Dm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y 901 (974)
T KOG1166|consen 850 DMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY 901 (974)
T ss_pred eeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence 4432 222344566777777777 4668999999999999999974
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5e-10 Score=128.43 Aligned_cols=265 Identities=25% Similarity=0.264 Sum_probs=120.6
Q ss_pred CCcEEeccCCc--CcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCccc-ccCEEE
Q 042735 4 NLRELHLRDNY--LTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNL-MLTVLA 80 (667)
Q Consensus 4 ~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~-~L~~L~ 80 (667)
+|+.|-+..|. +..+....|..++.|++|||++|.=-+.+|+.++.|-+||+|+|++..+. .+|..++++ .|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 45555555554 33333333455666666666665544456666666666666666666665 556555553 366666
Q ss_pred cccccccccCCccccCCCCccEEEeeCccc--ccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCC----EEECc
Q 042735 81 LENNHFTGNLRHNICRNGALERVIVGGNHF--RGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLT----FLDIS 154 (667)
Q Consensus 81 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~--~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~----~L~L~ 154 (667)
+..+.....++...+.+.+|++|.+..... ....-..+.++.+|+.|....... .+-..+..+++|. .+.+.
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhc
Confidence 665554434444445556666665544331 111112223333333333322211 0111122222222 22222
Q ss_pred CCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccC------CCCcCeeeccCCcccccCCccccCCcccceeecccc
Q 042735 155 DNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGN------LSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGN 228 (667)
Q Consensus 155 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 228 (667)
++.. ...+.++..+.+|+.|.+.++.+....-..... ++++..+....+... ..+.+....++|+.|.+..+
T Consensus 703 ~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 703 GCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSC 780 (889)
T ss_pred cccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecc
Confidence 2111 233445566667777777666654321111110 111222222111111 11222234566777777766
Q ss_pred cccccCcccccCCCCCCeeeccCCcCCcc-chhhhhcccCCCeecC
Q 042735 229 QLIGHLPSEIGSLTKLEFLNLSTNRFSSL-IPESLGNLLKLHYLDL 273 (667)
Q Consensus 229 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l 273 (667)
.....+.+....+..+..+-+..+.+.+. .-...+.++++..+.+
T Consensus 781 ~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l 826 (889)
T KOG4658|consen 781 RLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL 826 (889)
T ss_pred cccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc
Confidence 66555555555555555555555555554 2333344444444433
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.3e-10 Score=109.57 Aligned_cols=138 Identities=26% Similarity=0.259 Sum_probs=107.8
Q ss_pred cCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCC
Q 042735 114 IPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNL 193 (667)
Q Consensus 114 ~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 193 (667)
.-..+..+..|++|||++|.|+ .+.++..-.+.++.|++|+|.+.. ..++..+++|+.|+|++|.++. +...-.++
T Consensus 276 ~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KL 351 (490)
T KOG1259|consen 276 ALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLAE-CVGWHLKL 351 (490)
T ss_pred eEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhHh-hhhhHhhh
Confidence 3344555678889999999887 566778888899999999998853 3347788999999999998874 33444567
Q ss_pred CCcCeeeccCCcccccCCccccCCcccceeeccccccccc-CcccccCCCCCCeeeccCCcCCcc
Q 042735 194 STLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGH-LPSEIGSLTKLEFLNLSTNRFSSL 257 (667)
Q Consensus 194 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~ 257 (667)
-+++.|.|+.|.+.. -..++.|-+|..||+++|++... -...+|+||.|+.+.|.+|.+.+.
T Consensus 352 GNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred cCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 788999999998753 24577888999999999998632 235789999999999999999875
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6e-11 Score=116.33 Aligned_cols=241 Identities=23% Similarity=0.251 Sum_probs=126.8
Q ss_pred CCCcEEeccCCcCcCC----CCccccCCCCCCEEEccCcc---ccccCCc-------cccCCCCCCeeeccccccceeCC
Q 042735 3 TNLRELHLRDNYLTGL----IPTETWNLKSLVKLGLGGNQ---FRGSLPS-------SVGNLSSLRYLFLFENNLSGSIP 68 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~---l~~~~p~-------~~~~l~~L~~L~L~~n~l~~~~p 68 (667)
..++.|+||+|.+... +...+.+.++|+.-++++-- +...+|+ ++...++|+.||||+|-+.-.-+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 3556666666666421 22333445566666665442 1112222 23344466666666665543322
Q ss_pred CCCcc-----cccCEEEcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccc----cc
Q 042735 69 PSVGN-----LMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGT----IS 139 (667)
Q Consensus 69 ~~~~~-----~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~----~~ 139 (667)
..+.. ..|+.|.|.+|.+...-...+.. .|..| . .-....+-++|+.+...+|++... +.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l--~-------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFEL--A-------VNKKAASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHH--H-------HHhccCCCcceEEEEeeccccccccHHHHH
Confidence 22221 23555666666553111000000 00000 0 011233445666666666665422 23
Q ss_pred hhhhcCCCCCEEECcCCccCCc----cCccCCCCCCCCEEEccCCcCCCC----cCccccCCCCcCeeeccCCcccccCC
Q 042735 140 EAFGIYLNLTFLDISDNNFFGE----IASNWGKCPKLSTLNVSMNNITRS----IPLEIGNLSTLNEFDLSLNHIVGKIP 211 (667)
Q Consensus 140 ~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p 211 (667)
..|...+.|+.+.++.|.|... +..++..+++|+.|+|.+|-++.. +...+..++.|++|++++|.+...-.
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga 258 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA 258 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH
Confidence 3455556677777776665321 123456677777777777766532 23345566778888888777653322
Q ss_pred cc----c-cCCcccceeecccccccc----cCcccccCCCCCCeeeccCCcC
Q 042735 212 KE----F-GKLNSLTKLILRGNQLIG----HLPSEIGSLTKLEFLNLSTNRF 254 (667)
Q Consensus 212 ~~----~-~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l 254 (667)
.. + ...++|++|.|.+|.++. .+-..+...+.|..|+|++|.+
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 11 1 336788888888888763 2233455678899999999998
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-09 Score=101.28 Aligned_cols=16 Identities=44% Similarity=0.530 Sum_probs=5.0
Q ss_pred cCCCCCCeeeccCCcC
Q 042735 239 GSLTKLEFLNLSTNRF 254 (667)
Q Consensus 239 ~~l~~L~~L~Ls~N~l 254 (667)
..+++|++|+|.+|.+
T Consensus 110 ~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 110 SSLPKLRVLSLEGNPV 125 (175)
T ss_dssp GG-TT--EEE-TT-GG
T ss_pred HcCCCcceeeccCCcc
Confidence 3444444444444444
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.6e-10 Score=83.56 Aligned_cols=61 Identities=41% Similarity=0.542 Sum_probs=56.6
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeecccccc
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNL 63 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 63 (667)
++|+.|++++|+|+.+.+..|.++++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5799999999999988888999999999999999999988889999999999999999975
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-10 Score=124.62 Aligned_cols=196 Identities=24% Similarity=0.221 Sum_probs=91.7
Q ss_pred CCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccC-ccCCCCCCCCEE
Q 042735 97 NGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIA-SNWGKCPKLSTL 175 (667)
Q Consensus 97 ~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 175 (667)
+.+|+.|++++|.|+... .+..++.|+.|++.+|.|+.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+
T Consensus 117 ~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l 191 (414)
T KOG0531|consen 117 LVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEEL 191 (414)
T ss_pred hhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHH
Confidence 334444444444444322 234445566666666665432 223335566666666665543222 1 3455556666
Q ss_pred EccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcc--cceeecccccccccCcccccCCCCCCeeeccCCc
Q 042735 176 NVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNS--LTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNR 253 (667)
Q Consensus 176 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 253 (667)
++.+|.+.... .+..+..+..+++..|.+...-+ +..+.. |+.+++++|++.. .+..+..+..+..|++.+|+
T Consensus 192 ~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 192 DLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred hccCCchhccc--chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcc
Confidence 66666554221 22233334444555555542211 122222 6666666666542 22445556666666666666
Q ss_pred CCccchhhhhcccCCCeecCCCccCccc---cchh-hhcCCCCCEEECcCCCCCC
Q 042735 254 FSSLIPESLGNLLKLHYLDLSKYQFIQE---LPKE-LGKLVQLSELELSHNFLGR 304 (667)
Q Consensus 254 l~~~~p~~~~~l~~L~~L~ls~n~~~~~---~p~~-l~~l~~L~~L~l~~n~l~~ 304 (667)
+.... .+.....+..+....|.+... .... ....+.++.+.+..|+...
T Consensus 267 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 267 ISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 65431 222333444444444443211 1111 3345556666666665533
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-09 Score=100.78 Aligned_cols=125 Identities=26% Similarity=0.274 Sum_probs=29.5
Q ss_pred cCCCCCCEEEccCccccccCCcccc-CCCCCCeeeccccccceeCCCCCcccccCEEEcccccccccCCccc-cCCCCcc
Q 042735 24 WNLKSLVKLGLGGNQFRGSLPSSVG-NLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNI-CRNGALE 101 (667)
Q Consensus 24 ~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~L~ 101 (667)
.+...+++|+|++|+|+. + +.++ .+.+|+.|+|++|.|+. ++..-....|+.|+|++|.++.. ...+ ..+++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LEGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-ccCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence 345566777777777663 2 3344 46667777777776652 33322223455555555555422 1111 1233444
Q ss_pred EEEeeCccccccc-CccCCCCCCCcEEEccCCccccccc---hhhhcCCCCCEEE
Q 042735 102 RVIVGGNHFRGPI-PKCLRNCPNLVRISLEGNNMRGTIS---EAFGIYLNLTFLD 152 (667)
Q Consensus 102 ~L~l~~n~~~~~~-p~~l~~l~~L~~L~L~~n~~~~~~~---~~~~~l~~L~~L~ 152 (667)
.|++++|++...- -..+..+++|+.|+|.+|.++.... ..+..+++|+.||
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 4444444443211 0233445555555555555543211 1234445555544
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-10 Score=123.37 Aligned_cols=244 Identities=24% Similarity=0.233 Sum_probs=133.3
Q ss_pred CCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcccccccccCCccccCCCCccEEE
Q 042735 26 LKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERVI 104 (667)
Q Consensus 26 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 104 (667)
+..++.++++.|.|.. +-..+..+++|+.|++.+|+|... ...+.. .+|++|+|++|.++... .+..+..|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 4444445555555442 223344555555555555555422 111221 33555555555554322 122334466666
Q ss_pred eeCcccccccCccCCCCCCCcEEEccCCccccccc-hhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCC
Q 042735 105 VGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTIS-EAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNIT 183 (667)
Q Consensus 105 l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 183 (667)
+.+|.++.. ..+..+++|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.. ...+..+..+..+++..|.++
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccce
Confidence 666666533 234557777777777777765433 2 4666777777777777632 333344455555577777765
Q ss_pred CCcCccccCCC--CcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCcc---c
Q 042735 184 RSIPLEIGNLS--TLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL---I 258 (667)
Q Consensus 184 ~~~p~~~~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~ 258 (667)
..-+ +..+. .|+.+++++|.+.. .+..+..+..+..|++.+|++... ..+.....+..+.+..|.+... .
T Consensus 222 ~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (414)
T KOG0531|consen 222 KLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAIS 296 (414)
T ss_pred eccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhh
Confidence 4322 22222 37788888887653 235566777788888888876532 2334455666666666666532 1
Q ss_pred hhh-hhcccCCCeecCCCccCccccc
Q 042735 259 PES-LGNLLKLHYLDLSKYQFIQELP 283 (667)
Q Consensus 259 p~~-~~~l~~L~~L~ls~n~~~~~~p 283 (667)
... ......++.+.+..|......+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 297 QEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccccccccccccccccCccccccc
Confidence 111 3445667777777776554444
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.9e-09 Score=120.39 Aligned_cols=125 Identities=21% Similarity=0.186 Sum_probs=68.1
Q ss_pred CcEEeccCCcCcCCCCccccCCCCCCEEEccCcc--ccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEc
Q 042735 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQ--FRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLAL 81 (667)
Q Consensus 5 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L 81 (667)
.+...+-+|.+..+ +.. .+.++|++|-+.+|. +....++.|..++.|+.|||++|.=-+.+|..++. .+|++|+|
T Consensus 525 ~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred eeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 34445555555432 222 234466666666664 44333334556677777777666544566666665 34666666
Q ss_pred ccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCC
Q 042735 82 ENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGN 132 (667)
Q Consensus 82 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n 132 (667)
++..++ .+|..+.++..|.+|++..+.....+|.....|++|++|.+...
T Consensus 603 ~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 603 SDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 666665 55555555566666665555444344444444556665555433
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-08 Score=76.85 Aligned_cols=59 Identities=31% Similarity=0.436 Sum_probs=29.4
Q ss_pred CCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCc
Q 042735 123 NLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNN 181 (667)
Q Consensus 123 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 181 (667)
+|++|++++|+++...+..|..+++|++|++++|.+....+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554444455555555555555555544444444555555555554443
|
... |
| >KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-08 Score=105.37 Aligned_cols=215 Identities=24% Similarity=0.259 Sum_probs=142.1
Q ss_pred CcCcceeec--ccCeEEEEEEe---CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCce
Q 042735 423 FDAKYCIGS--GRHGSVYRAEL---PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHS 496 (667)
Q Consensus 423 f~~~~~lg~--g~~g~vy~~~~---~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~ 496 (667)
|.....+|. |.+|.||.+.. .++..+|+|+-+...... .....=.+|+....+++ |+|.|+.+..+...+..
T Consensus 116 ~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p--~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~l 193 (524)
T KOG0601|consen 116 FPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPP--LDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGIL 193 (524)
T ss_pred cccccccccCCCCCceeecccCCcccCCcccccccccCCCCCc--cccccccchhhcccccCccccccccCcccccCCcc
Confidence 455667899 99999999965 457778998754432211 11223456777777887 99999999999999999
Q ss_pred EEEEEecCCCChHHHhccc-----------------c----C--------CcccccccCCeeecCC-CceEEeccccccc
Q 042735 497 ILIYEYLKRGSLATNLSND-----------------A----A--------AEELDISSKNVLLDLE-HKAHVSDFGIAKF 546 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~-----------------~----~--------~~~~dlk~~NiLld~~-~~~kl~DFGla~~ 546 (667)
++-.|++. .++..+-+.. . + ..+.|+||.||.+..+ ...+++|||+...
T Consensus 194 fiqtE~~~-~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~~~~s~~~~df~~v~~ 272 (524)
T KOG0601|consen 194 FIQTELCG-ESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTSDWTSCKLTDFGLVSK 272 (524)
T ss_pred eeeecccc-chhHHhhhcccccCCchhhhhHHhhhhhcccccccccCCCcccccccchhheecccccceeecCCcceeEE
Confidence 99999887 4554332210 0 1 1123999999999988 8899999999987
Q ss_pred ccCCCCCc-----ccccccccccCCC-----CCCCchHHHHHHHHHHHHhCCCCCCC---CccCCCChhhhhhhhccccC
Q 042735 547 LKPDSSNW-----SALVGTYRYVAPD-----YRKKCDVYSFRVLALEVIKGKHPRGF---VSSILPSPSVINMRLDEMLD 613 (667)
Q Consensus 547 ~~~~~~~~-----~~~~Gt~~y~aPE-----~~~~~DV~sfGvvl~ElltG~~p~~~---~~~~~~~~~~~~~~~~~~~~ 613 (667)
+....-.. ....|-..|++|| |+.++|+||+|.+..|-.+|...... ..|..- +...
T Consensus 273 i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~---------r~~~- 342 (524)
T KOG0601|consen 273 ISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQL---------RQGY- 342 (524)
T ss_pred ccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCcccc---------cccc-
Confidence 66543111 1125677899999 56789999999999999998765321 122110 0100
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHH
Q 042735 614 PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQ 654 (667)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~ 654 (667)
++.. .+.....++.......++.+|..|++.+.++..
T Consensus 343 --ip~e--~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l 379 (524)
T KOG0601|consen 343 --IPLE--FCEGGSSSLRSVTSQMLDEDPRLRLTAQILTAL 379 (524)
T ss_pred --Cchh--hhcCcchhhhhHHHHhcCcchhhhhHHHHHhcc
Confidence 1100 000111122224557799999999999887754
|
|
| >cd05151 ChoK Choline Kinase (ChoK) | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.4e-07 Score=84.72 Aligned_cols=111 Identities=22% Similarity=0.229 Sum_probs=78.0
Q ss_pred ceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCee-EEEEEEEeCCceEEEEEecCC
Q 042735 427 YCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV-KFYGFCSHARHSILIYEYLKR 505 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv-~~~g~~~~~~~~~lv~ey~~~ 505 (667)
+.++.|.++.||+++.. +..+++|....... ....+.+|++++..+.+.+++ +++++. ....++||||+++
T Consensus 4 ~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~-----~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G 75 (170)
T cd05151 4 SPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTE-----LLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEG 75 (170)
T ss_pred eecCCcccCceEEEEEC-CeEEEEEeCCCCcc-----cccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCC
Confidence 45788999999999875 66799998654321 112466889999888765544 455443 3345899999999
Q ss_pred CChHHH-----------------hccccC----CcccccccCCeeecCCCceEEeccccccc
Q 042735 506 GSLATN-----------------LSNDAA----AEELDISSKNVLLDLEHKAHVSDFGIAKF 546 (667)
Q Consensus 506 g~L~~~-----------------l~~~~~----~~~~dlk~~NiLld~~~~~kl~DFGla~~ 546 (667)
.++... ++.... ..|.|++|.||+++ ++.+++.|||.+..
T Consensus 76 ~~l~~~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~ 136 (170)
T cd05151 76 SELLTEDFSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM 136 (170)
T ss_pred CccccccccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence 887531 111111 14569999999999 67899999999864
|
The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph |
| >KOG1266 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.1e-08 Score=94.62 Aligned_cols=171 Identities=18% Similarity=0.249 Sum_probs=105.7
Q ss_pred HHHHhcCCCCeeEEEEEEEeCC-----ceEEEEEecCCCChHHHhccccC------------------------------
Q 042735 473 EALTKIRHRNIVKFYGFCSHAR-----HSILIYEYLKRGSLATNLSNDAA------------------------------ 517 (667)
Q Consensus 473 ~~l~~l~H~niv~~~g~~~~~~-----~~~lv~ey~~~g~L~~~l~~~~~------------------------------ 517 (667)
+-+-.+.|-|||+++.|+.+.+ ....+.|||..|++..+|++.+.
T Consensus 119 dnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~Pp 198 (458)
T KOG1266|consen 119 DNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCDPP 198 (458)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccCCc
Confidence 4566778999999999986543 46788999999999988865321
Q ss_pred CcccccccCCeeecCCCceEEecccccccccCC----CCCcccccccccccCCCCC------CCchHHHHHHHHHHHHhC
Q 042735 518 AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD----SSNWSALVGTYRYVAPDYR------KKCDVYSFRVLALEVIKG 587 (667)
Q Consensus 518 ~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~----~~~~~~~~Gt~~y~aPE~~------~~~DV~sfGvvl~ElltG 587 (667)
+.+-++..+-|.+..+|-+|+.--.....-... ......-.|-++|-||||. ..+|||+||...+||..|
T Consensus 199 iihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemail 278 (458)
T KOG1266|consen 199 IIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAIL 278 (458)
T ss_pred cccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHHh
Confidence 111277788899998888888532111110000 0011223467899999974 478999999999999988
Q ss_pred CCC-CCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 588 KHP-RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 588 ~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
..- ....+.+.... -+...........+. +.+..|++..|..||+|.+++.|+...
T Consensus 279 Eiq~tnseS~~~~ee---------~ia~~i~~len~lqr------~~i~kcl~~eP~~rp~ar~llfHpllf 335 (458)
T KOG1266|consen 279 EIQSTNSESKVEVEE---------NIANVIIGLENGLQR------GSITKCLEGEPNGRPDARLLLFHPLLF 335 (458)
T ss_pred eeccCCCcceeehhh---------hhhhheeeccCcccc------CcCcccccCCCCCCcchhhhhcCceee
Confidence 742 22111111100 000000000111111 234489999999999999998875443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.8e-09 Score=111.18 Aligned_cols=127 Identities=27% Similarity=0.284 Sum_probs=83.9
Q ss_pred CccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEcc
Q 042735 99 ALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVS 178 (667)
Q Consensus 99 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 178 (667)
.|...+.+.|.+. .+..++.-++.|+.|+|+.|+++.. +.+..+++|++|||++|++....--...++. |..|+++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 3444455555554 3445566677788888888887643 3677778888888888887543222233444 8888888
Q ss_pred CCcCCCCcCccccCCCCcCeeeccCCcccccCC-ccccCCcccceeeccccccc
Q 042735 179 MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIP-KEFGKLNSLTKLILRGNQLI 231 (667)
Q Consensus 179 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~ 231 (667)
+|.++.. ..+.+|.+|+.||+++|-+.+.-. .-++.|..|+.|+|.+|.+.
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8877643 247788888888888887764321 22566777888888888764
|
|
| >KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-07 Score=98.88 Aligned_cols=220 Identities=20% Similarity=0.202 Sum_probs=141.8
Q ss_pred HHHcCCcCcceeecccCeEEEEEEe--CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCC
Q 042735 418 RAINDFDAKYCIGSGRHGSVYRAEL--PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHAR 494 (667)
Q Consensus 418 ~~~~~f~~~~~lg~g~~g~vy~~~~--~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~ 494 (667)
.-+.+|.....||.|.|+.||+... .++..+++|......... .+...-..|+-+...+. |.+++.++..+...+
T Consensus 262 ~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~--~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r 339 (524)
T KOG0601|consen 262 CKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATF--ASDIFSLGEVILEAILGSHLPSVGKNSSWSQLR 339 (524)
T ss_pred eecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccch--HhhhcchhhhhHhhHhhcccccCCCCCCccccc
Confidence 3456888899999999999999865 457789999876543321 11122235555555554 999999988888888
Q ss_pred ceEEEEEecCCCChHHHhc------cc------------------cCCcccccccCCeeecCC-CceEEecccccccccC
Q 042735 495 HSILIYEYLKRGSLATNLS------ND------------------AAAEELDISSKNVLLDLE-HKAHVSDFGIAKFLKP 549 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~------~~------------------~~~~~~dlk~~NiLld~~-~~~kl~DFGla~~~~~ 549 (667)
..|+=-|||++++...... .+ ....++|+||+||++..+ +.-+++|||.+..+..
T Consensus 340 ~~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t~~~~ 419 (524)
T KOG0601|consen 340 QGYIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIHSKLFVHLDVKPSNILISNDGFFSKLGDFGCWTRLAF 419 (524)
T ss_pred cccCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhccccccchhhhcccccccceeeccchhhhhccccccccccce
Confidence 8889999999998764331 10 011245999999999876 7889999999875322
Q ss_pred CCCCccccccccccc--CCC------CCCCchHHHHHHHHHHHHhCCCCC-CCCccCCCChhhhhhhhccccCCCCCCCC
Q 042735 550 DSSNWSALVGTYRYV--APD------YRKKCDVYSFRVLALEVIKGKHPR-GFVSSILPSPSVINMRLDEMLDPRLPPPS 620 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~--aPE------~~~~~DV~sfGvvl~ElltG~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (667)
. ..+..++-+++ +++ +..++|+||||..+.|.+||..-. ....|. .+..-.-+..+...
T Consensus 420 ~---~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~~~~---------~i~~~~~p~~~~~~ 487 (524)
T KOG0601|consen 420 S---SGVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGVQSL---------TIRSGDTPNLPGLK 487 (524)
T ss_pred e---cccccccccccccchhhccccccccccccccccccccccccCcccCcccccce---------eeecccccCCCchH
Confidence 1 12233333444 332 457899999999999999997531 111111 00111111122111
Q ss_pred CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 621 ~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
..+..++......++..||.+.+...+..|.
T Consensus 488 -------~~~q~~~kv~~~~~~~~~~l~~~l~~~~~~~ 518 (524)
T KOG0601|consen 488 -------LQLQVLLKVMINPDRKRRPSAVELSLHSEFY 518 (524)
T ss_pred -------HhhhhhhhhhcCCccccchhhhhhcccchhh
Confidence 1223344456788999999998888776654
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-08 Score=108.48 Aligned_cols=126 Identities=29% Similarity=0.242 Sum_probs=70.4
Q ss_pred CCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecc
Q 042735 147 NLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILR 226 (667)
Q Consensus 147 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 226 (667)
.|.+.+.+.|.+. .+..++.-++.|+.|+|++|+++..- .+..|+.|++|||++|.+....--...++. |+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 3555555566553 34455556666677777777665432 456666677777777766532111222333 6667777
Q ss_pred cccccccCcccccCCCCCCeeeccCCcCCccc-hhhhhcccCCCeecCCCccC
Q 042735 227 GNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLI-PESLGNLLKLHYLDLSKYQF 278 (667)
Q Consensus 227 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~ls~n~~ 278 (667)
+|.++. -..+.+|.+|+.||+++|-+.+.- -..++.+..|+.|+|.+|.+
T Consensus 241 nN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 776642 124556666677777776665431 11234455666666666654
|
|
| >KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-07 Score=106.22 Aligned_cols=233 Identities=19% Similarity=0.244 Sum_probs=141.5
Q ss_pred HHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
..++|...+-+-+|.++.++-+.-. .+...+.|.......... .+.+...++-.++-..+||.+++..-.+......+
T Consensus 802 S~d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~-~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rsP~~ 880 (1205)
T KOG0606|consen 802 SPDGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRT-NDYESIRSKSNILITPRSPAVVRSFPSFPCRSPLP 880 (1205)
T ss_pred CCccceecccccCCCCcccccCCccccccccchhhhccchhhcc-ccccccCCccCccccCCCCceecccCCCCCCCCcc
Confidence 4466777777888999999887543 233333333221100000 00111223333444456788887766655667789
Q ss_pred EEEEecCCCChHHHhcccc-----C-------------------CcccccccCCeeecCCCceEEecccccccccC----
Q 042735 498 LIYEYLKRGSLATNLSNDA-----A-------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKP---- 549 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~-----~-------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~---- 549 (667)
+|++|..+|++...|+... + ..+.|++|.|++...+++.+++|||.......
T Consensus 881 L~~~~~~~~~~~Skl~~~~~~saepaRs~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~p~ 960 (1205)
T KOG0606|consen 881 LVGHYLNGGDLPSKLHNSGCLSAEPARSPILERVQSLESLHSSLRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIPPT 960 (1205)
T ss_pred hhhHHhccCCchhhhhcCCCcccccccchhHHHHhhhhccccchhhcccccccchhhcccCCcccCccccccccccccCc
Confidence 9999999999988876432 0 12349999999999999999999984432110
Q ss_pred --C----C---------------------CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCcc
Q 042735 550 --D----S---------------------SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSS 596 (667)
Q Consensus 550 --~----~---------------------~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~ 596 (667)
. . .......||+.|.||| ....+|+|++|++++|.++|.+|+.....
T Consensus 961 ~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~tp 1040 (1205)
T KOG0606|consen 961 TDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAETP 1040 (1205)
T ss_pred CCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCcch
Confidence 0 0 0012457999999999 34578999999999999999999863321
Q ss_pred CCCChhhhhhhhccccCC--CCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHH---HHHHHHHHhhhhhc
Q 042735 597 ILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQ---TITQQLLFSLVYFS 663 (667)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~---ev~~~l~~~~~~~~ 663 (667)
. . + .+.+... .++..... ...+..+++.+-+..+|.+|-.|. ++..+.+|.-+.++
T Consensus 1041 q---~-~----f~ni~~~~~~~p~g~~~---~s~~aq~~~~~ll~~~~~qr~~a~~~~e~k~~~~~~~~~~~ 1101 (1205)
T KOG0606|consen 1041 Q---Q-I----FENILNRDIPWPEGPEE---GSYEAQDLINRLLTEEPTQRLGAKGAAEVKGHPFFQDVDWE 1101 (1205)
T ss_pred h---h-h----hhccccCCCCCCCCccc---cChhhhhhhhhhhccCchhccCcccccccccCCccCCCCcc
Confidence 1 1 1 1122211 12111111 111223344456788999997776 77777777666554
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.8e-08 Score=93.97 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=50.4
Q ss_pred CCCCCEEEccCccccccC-Ccccc-CCCCCCeeecccccccee--CCCCCcc-cccCEEEcccccccccCCccccCCCCc
Q 042735 26 LKSLVKLGLGGNQFRGSL-PSSVG-NLSSLRYLFLFENNLSGS--IPPSVGN-LMLTVLALENNHFTGNLRHNICRNGAL 100 (667)
Q Consensus 26 l~~L~~L~L~~n~l~~~~-p~~~~-~l~~L~~L~L~~n~l~~~--~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L 100 (667)
+.-++.|-|.++.|...- -..|+ ..+.++.|||.+|+|++. +-..+.. +.|++|+|+.|.+...+...-....+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 344445555555554211 11222 245566777777766531 1111222 346666666666654443332334455
Q ss_pred cEEEeeCcccccc-cCccCCCCCCCcEEEccCCc
Q 042735 101 ERVIVGGNHFRGP-IPKCLRNCPNLVRISLEGNN 133 (667)
Q Consensus 101 ~~L~l~~n~~~~~-~p~~l~~l~~L~~L~L~~n~ 133 (667)
+.|.+.+..+.-. ....+.++|.++.|+++.|+
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 5555554444221 22334455555555555553
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.7e-06 Score=88.45 Aligned_cols=144 Identities=12% Similarity=0.115 Sum_probs=98.6
Q ss_pred EeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecCCCC--------h----
Q 042735 441 ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGS--------L---- 508 (667)
Q Consensus 441 ~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~~g~--------L---- 508 (667)
+..++..|.|..++.... .......+-++.++.+|||||++|+..+...+..|+|.|-+.--. .
T Consensus 33 ~k~~~~~vsVF~~~~~~~----~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~Pl~~~lk~l~~~~v~~ 108 (690)
T KOG1243|consen 33 RKADGGPVSVFVYKRSNG----EVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVRPLETVLKELGKEEVCL 108 (690)
T ss_pred eeccCCceEEEEEeCCCc----hhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccccHHHHHHHhHHHHHHH
Confidence 455677888887754322 112335567788999999999999999999999999999764221 1
Q ss_pred --H------HHhccccCCcccccccCCeeecCCCceEEecccccccccCCCCCcccccccccccCCCCCCC----chHHH
Q 042735 509 --A------TNLSNDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKK----CDVYS 576 (667)
Q Consensus 509 --~------~~l~~~~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE~~~~----~DV~s 576 (667)
+ .+|.++....|-+|.-+.|.+++.|+.||++|-++..............--..|..|+-..+ .|.|-
T Consensus 109 Gl~qIl~AL~FL~~d~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~~~s~~s~D~~~ 188 (690)
T KOG1243|consen 109 GLFQILAALSFLNDDCNLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEIDPSEWSIDSWG 188 (690)
T ss_pred HHHHHHHHHHHHhccCCeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhcCccccchhhhh
Confidence 0 12334445556689999999999999999999888654322210011111123556653333 49999
Q ss_pred HHHHHHHHHhCC
Q 042735 577 FRVLALEVIKGK 588 (667)
Q Consensus 577 fGvvl~ElltG~ 588 (667)
||++++|++.|.
T Consensus 189 Lg~li~el~ng~ 200 (690)
T KOG1243|consen 189 LGCLIEELFNGS 200 (690)
T ss_pred HHHHHHHHhCcc
Confidence 999999999994
|
|
| >COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.3e-06 Score=76.20 Aligned_cols=118 Identities=18% Similarity=0.257 Sum_probs=81.6
Q ss_pred eeecccCeEEEEEEeCCCceEEEEec-CCCCCC---chHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEec
Q 042735 428 CIGSGRHGSVYRAELPSKEFLAVKKF-NSPLPS---DQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYL 503 (667)
Q Consensus 428 ~lg~g~~g~vy~~~~~~~~~~avk~~-~~~~~~---~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~ 503 (667)
.+++|+-+.+|.+.+.+.. +.+|.- ++.+.. ++.-..+.-.+|++++++++---|-.-+=+..+++...|+|||+
T Consensus 3 ~i~~GAEa~i~~~~~~g~~-av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~I 81 (204)
T COG3642 3 LIKQGAEAIIYLTDFLGLP-AVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEYI 81 (204)
T ss_pred hhhCCcceeEEeeeccCcc-eEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEEe
Confidence 4788999999999874433 555532 332221 11122346788999999887544444444556788889999999
Q ss_pred CCCChHHHhcccc-----------------CCcccccccCCeeecCCCceEEecccccccc
Q 042735 504 KRGSLATNLSNDA-----------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFL 547 (667)
Q Consensus 504 ~~g~L~~~l~~~~-----------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~ 547 (667)
+|-.|.+.+.... ...|-|+.++||++..+. +.+.|||++...
T Consensus 82 ~G~~lkd~l~~~~~~~~r~vG~~vg~lH~~givHGDLTtsNiIl~~~~-i~~IDfGLg~~s 141 (204)
T COG3642 82 EGELLKDALEEARPDLLREVGRLVGKLHKAGIVHGDLTTSNIILSGGR-IYFIDFGLGEFS 141 (204)
T ss_pred CChhHHHHHHhcchHHHHHHHHHHHHHHhcCeecCCCccceEEEeCCc-EEEEECCccccc
Confidence 9998887776541 112339999999997654 999999999853
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.3e-07 Score=88.33 Aligned_cols=103 Identities=18% Similarity=0.116 Sum_probs=61.8
Q ss_pred EEeccCCcCcCCCCc-cc-cCCCCCCEEEccCccccccC--CccccCCCCCCeeeccccccceeCCCC-CcccccCEEEc
Q 042735 7 ELHLRDNYLTGLIPT-ET-WNLKSLVKLGLGGNQFRGSL--PSSVGNLSSLRYLFLFENNLSGSIPPS-VGNLMLTVLAL 81 (667)
Q Consensus 7 ~L~L~~n~l~~~~p~-~~-~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~~~L~~L~L 81 (667)
.|.+.++.|..+... .| ...+.++.|||.+|+|+.+. -.-+.+|+.|++|+|+.|.+...+-.. +...+|++|.|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 455556655433221 12 25678889999999988542 234568899999999999886332222 22346888888
Q ss_pred ccccccccCCc-cccCCCCccEEEeeCcc
Q 042735 82 ENNHFTGNLRH-NICRNGALERVIVGGNH 109 (667)
Q Consensus 82 ~~n~l~~~~~~-~~~~~~~L~~L~l~~n~ 109 (667)
.+.++...--. .+..++.++.|.++.|+
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 88887643222 22334455555555553
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.4e-07 Score=88.29 Aligned_cols=175 Identities=21% Similarity=0.213 Sum_probs=72.2
Q ss_pred CcEEEccCCccccc-cchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCC--cCccccCCCCcCeee
Q 042735 124 LVRISLEGNNMRGT-ISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRS--IPLEIGNLSTLNEFD 200 (667)
Q Consensus 124 L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~ 200 (667)
|+.|||++..|+.. +...+..+.+|+.|.|.++++...+...+..-.+|+.|+|+.+.--.. ...-+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 45555555444321 112233444455555555555444444444444555555554421100 111234455555555
Q ss_pred ccCCcccccCCcc-ccC-Ccccceeecccccc---cccCcccccCCCCCCeeeccCCcCCc-cchhhhhcccCCCeecCC
Q 042735 201 LSLNHIVGKIPKE-FGK-LNSLTKLILRGNQL---IGHLPSEIGSLTKLEFLNLSTNRFSS-LIPESLGNLLKLHYLDLS 274 (667)
Q Consensus 201 L~~n~l~~~~p~~-~~~-l~~L~~L~L~~n~l---~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~ls 274 (667)
|+.|.+....... +.+ -++|..|+|+++.- ...+..-...+++|..|||++|.--. ..-..|..++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 5555433221110 000 13445555554321 01111112345556666665543221 111223345555555555
Q ss_pred CccCccccchh---hhcCCCCCEEECcCC
Q 042735 275 KYQFIQELPKE---LGKLVQLSELELSHN 300 (667)
Q Consensus 275 ~n~~~~~~p~~---l~~l~~L~~L~l~~n 300 (667)
.| .+.+|.. +...+.|.+|++.++
T Consensus 347 RC--Y~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 347 RC--YDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hh--cCCChHHeeeeccCcceEEEEeccc
Confidence 44 2344443 334455555555443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.7e-08 Score=92.27 Aligned_cols=175 Identities=19% Similarity=0.224 Sum_probs=92.0
Q ss_pred CCcEEeccCCcCcCC-CCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccc-ccee-CCCCCcc-cccCEE
Q 042735 4 NLRELHLRDNYLTGL-IPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN-LSGS-IPPSVGN-LMLTVL 79 (667)
Q Consensus 4 ~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~-~p~~~~~-~~L~~L 79 (667)
.|+.||||+..|+.- .-.-++.+++|+.|.|.++++++.+-..+++-.+|+.|+|+.+. ++.. ..-.+.+ ..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477888888877631 12234568888888888888888888888888888888888763 2210 0000111 237777
Q ss_pred EcccccccccCCc-cccC-CCCccEEEeeCcc---cccccCccCCCCCCCcEEEccCCc-cccccchhhhcCCCCCEEEC
Q 042735 80 ALENNHFTGNLRH-NICR-NGALERVIVGGNH---FRGPIPKCLRNCPNLVRISLEGNN-MRGTISEAFGIYLNLTFLDI 153 (667)
Q Consensus 80 ~L~~n~l~~~~~~-~~~~-~~~L~~L~l~~n~---~~~~~p~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L 153 (667)
+|+-|.+.-..-. .+.. ..+|+.|+++|.. ....+..-...+|+|..|||++|. ++...-..|-.++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 7777765432111 0100 2345555555431 111111223445666666665543 22222234445555555555
Q ss_pred cCCccCCccCc---cCCCCCCCCEEEccCC
Q 042735 154 SDNNFFGEIAS---NWGKCPKLSTLNVSMN 180 (667)
Q Consensus 154 ~~n~l~~~~~~---~~~~l~~L~~L~L~~n 180 (667)
+.|.. .+|. .+...+.|.+|++.++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 55532 2332 2234444555554443
|
|
| >cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.9e-05 Score=74.91 Aligned_cols=81 Identities=11% Similarity=0.154 Sum_probs=59.6
Q ss_pred ceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCC--CCeeEEEEEEEeCC---ceEEEEE
Q 042735 427 YCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH--RNIVKFYGFCSHAR---HSILIYE 501 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H--~niv~~~g~~~~~~---~~~lv~e 501 (667)
+.++.|..+.||+++..+|..+++|........ .....+.+|++++..+++ .++.+++++..... ..++|||
T Consensus 4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~---~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e 80 (223)
T cd05154 4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALL---PSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVME 80 (223)
T ss_pred eecCCCccceEEEEEecCCcceEEEeCCCcccC---cccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEE
Confidence 468999999999998877678999986543211 123457889999999876 44567777766542 5689999
Q ss_pred ecCCCChHH
Q 042735 502 YLKRGSLAT 510 (667)
Q Consensus 502 y~~~g~L~~ 510 (667)
|++|+++.+
T Consensus 81 ~i~G~~l~~ 89 (223)
T cd05154 81 RVDGRVLRD 89 (223)
T ss_pred EeCCEecCC
Confidence 999887643
|
This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.7e-07 Score=76.15 Aligned_cols=81 Identities=28% Similarity=0.438 Sum_probs=35.5
Q ss_pred CCCEEEccCCcCCCCcCcccc-CCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeec
Q 042735 171 KLSTLNVSMNNITRSIPLEIG-NLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNL 249 (667)
Q Consensus 171 ~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 249 (667)
.|...+|++|.+.. +|..|. ..+.++.|+|++|+++ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|-.|+.
T Consensus 54 el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 34444555555442 222222 2234444555555444 23444444555555555555443 33333334444444444
Q ss_pred cCCcC
Q 042735 250 STNRF 254 (667)
Q Consensus 250 s~N~l 254 (667)
.+|.+
T Consensus 131 ~~na~ 135 (177)
T KOG4579|consen 131 PENAR 135 (177)
T ss_pred CCCcc
Confidence 44444
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.1e-05 Score=55.93 Aligned_cols=36 Identities=44% Similarity=0.596 Sum_probs=15.8
Q ss_pred CCcEEeccCCcCcCCCCccccCCCCCCEEEccCcccc
Q 042735 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFR 40 (667)
Q Consensus 4 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 40 (667)
+|++|++++|+|+.+ |..+.+|++|++|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence 444555555555432 333444555555555555444
|
... |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.1e-06 Score=80.75 Aligned_cols=243 Identities=19% Similarity=0.133 Sum_probs=117.7
Q ss_pred CCCcEEeccCCcCcCCC----CccccCCCCCCEEEccCcccc---ccCC-------ccccCCCCCCeeeccccccceeCC
Q 042735 3 TNLRELHLRDNYLTGLI----PTETWNLKSLVKLGLGGNQFR---GSLP-------SSVGNLSSLRYLFLFENNLSGSIP 68 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~---~~~p-------~~~~~l~~L~~L~L~~n~l~~~~p 68 (667)
..++.++||+|.|...- ...+.+-++|++.+++.-... ..++ .++.++++|+..+||+|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 34566666666664321 222334456666665554221 1112 134455666666666666654444
Q ss_pred CCCcc-----cccCEEEcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccc----
Q 042735 69 PSVGN-----LMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTIS---- 139 (667)
Q Consensus 69 ~~~~~-----~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~---- 139 (667)
..++. ..|..|.|++|.+...-...+++ .|.. + ..-+-..+-|.|+......|++..-..
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--l-------a~nKKaa~kp~Le~vicgrNRlengs~~~~a 178 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--L-------AYNKKAADKPKLEVVICGRNRLENGSKELSA 178 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--H-------HHHhhhccCCCceEEEeccchhccCcHHHHH
Confidence 43321 23666666666553111111110 0000 0 000112344566666666666532211
Q ss_pred hhhhcCCCCCEEECcCCccCCccC-----ccCCCCCCCCEEEccCCcCCCC----cCccccCCCCcCeeeccCCcccccC
Q 042735 140 EAFGIYLNLTFLDISDNNFFGEIA-----SNWGKCPKLSTLNVSMNNITRS----IPLEIGNLSTLNEFDLSLNHIVGKI 210 (667)
Q Consensus 140 ~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~ 210 (667)
..+..-.+|+++.+..|.|...-. -....+.+|+.|+|.+|.++-. +...+...+.|++|.+.+|-++..-
T Consensus 179 ~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G 258 (388)
T COG5238 179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEG 258 (388)
T ss_pred HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcccc
Confidence 112222456666666665432100 1123456677777777766521 2222334455777777777665332
Q ss_pred Ccc----c--cCCcccceeecccccccccCccc-------ccCCCCCCeeeccCCcCCc
Q 042735 211 PKE----F--GKLNSLTKLILRGNQLIGHLPSE-------IGSLTKLEFLNLSTNRFSS 256 (667)
Q Consensus 211 p~~----~--~~l~~L~~L~L~~n~l~~~~p~~-------~~~l~~L~~L~Ls~N~l~~ 256 (667)
..+ | ...++|+.|-..+|...+.+-.. -+.+|-|..|.+.+|++..
T Consensus 259 ~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 259 VKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred HHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 221 1 12466777777777654432211 1457788888888898864
|
|
| >cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.5e-05 Score=69.82 Aligned_cols=116 Identities=19% Similarity=0.279 Sum_probs=75.0
Q ss_pred ceeecccCeEEEEEEeCC-------CceEEEEecCCCCC----------Cch--------HHhHHHH----HHHHHHHHh
Q 042735 427 YCIGSGRHGSVYRAELPS-------KEFLAVKKFNSPLP----------SDQ--------IADQKEF----FAEIEALTK 477 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~~-------~~~~avk~~~~~~~----------~~~--------~~~~~~~----~~E~~~l~~ 477 (667)
.+||.|.-+.||.|.-.+ +..+|||..+.... .+. ....+.+ .+|.+.|.+
T Consensus 3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r 82 (197)
T cd05146 3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR 82 (197)
T ss_pred CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999997543 46899997753210 000 0001223 389999998
Q ss_pred cCC--CCeeEEEEEEEeCCceEEEEEecCCCChHH-Hhc------------------------cccCCcccccccCCeee
Q 042735 478 IRH--RNIVKFYGFCSHARHSILIYEYLKRGSLAT-NLS------------------------NDAAAEELDISSKNVLL 530 (667)
Q Consensus 478 l~H--~niv~~~g~~~~~~~~~lv~ey~~~g~L~~-~l~------------------------~~~~~~~~dlk~~NiLl 530 (667)
+.- -++-+.+++ ...++||||+.++.+.. .+. ......|-|+++.|||+
T Consensus 83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~~l~H~~glVHGDLs~~NIL~ 158 (197)
T cd05146 83 MQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYKECNLVHADLSEYNMLW 158 (197)
T ss_pred HHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEE
Confidence 863 456666654 45789999998753311 110 01112244999999999
Q ss_pred cCCCceEEecccccccc
Q 042735 531 DLEHKAHVSDFGIAKFL 547 (667)
Q Consensus 531 d~~~~~kl~DFGla~~~ 547 (667)
+ ++.+.++|||.+-..
T Consensus 159 ~-~~~v~iIDF~qav~~ 174 (197)
T cd05146 159 H-DGKVWFIDVSQSVEP 174 (197)
T ss_pred E-CCcEEEEECCCceeC
Confidence 7 578999999987643
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown. |
| >KOG3087 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00018 Score=65.51 Aligned_cols=121 Identities=18% Similarity=0.169 Sum_probs=79.4
Q ss_pred CcceeecccCeEEEEEEeCCCceEEEEecC-CCCC---CchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 425 AKYCIGSGRHGSVYRAELPSKEFLAVKKFN-SPLP---SDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 425 ~~~~lg~g~~g~vy~~~~~~~~~~avk~~~-~~~~---~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
....+-+|+-+.|+++.+. |+.+.||.-. +.+. .++.-..++..+|++++.+++--.|..-.=++.+...-.|+|
T Consensus 11 ~l~likQGAEArv~~~~~~-Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~M 89 (229)
T KOG3087|consen 11 SLELIKQGAEARVPRGSFS-GEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYM 89 (229)
T ss_pred cceeeeccceeeEeeeccC-CceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEE
Confidence 5567899999999999884 5556666432 2221 122223457889999999887444444444555666677899
Q ss_pred EecCCC-ChHHHhccccC--------------------------CcccccccCCeeecCCC---ceEEeccccccc
Q 042735 501 EYLKRG-SLATNLSNDAA--------------------------AEELDISSKNVLLDLEH---KAHVSDFGIAKF 546 (667)
Q Consensus 501 ey~~~g-~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~---~~kl~DFGla~~ 546 (667)
||+++- ++.+++..... ..|-||..+||++..++ .+.+.|||++..
T Consensus 90 E~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~ 165 (229)
T KOG3087|consen 90 EFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSV 165 (229)
T ss_pred EeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhCCeecccccccceEEecCCCcCceEEEeecchhc
Confidence 999873 45555532110 11229999999996544 457999999864
|
|
| >COG0661 AarF Predicted unusual protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00034 Score=75.97 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=87.7
Q ss_pred HcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCC---------------------Cc-----h----------HH
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLP---------------------SD-----Q----------IA 463 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~---------------------~~-----~----------~~ 463 (667)
.+.|+. ..|+.++-|+||+|++.+|+.||||+...... .. - ..
T Consensus 125 F~eF~~-~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~ 203 (517)
T COG0661 125 FSEFEP-EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLR 203 (517)
T ss_pred HHHcCC-CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHH
Confidence 345543 57899999999999999999999998764321 00 0 01
Q ss_pred hHHHHHHHHHHHHhc----CCCCeeEEEEEEEe-CCceEEEEEecCCCChHHHh--ccccCC------------------
Q 042735 464 DQKEFFAEIEALTKI----RHRNIVKFYGFCSH-ARHSILIYEYLKRGSLATNL--SNDAAA------------------ 518 (667)
Q Consensus 464 ~~~~~~~E~~~l~~l----~H~niv~~~g~~~~-~~~~~lv~ey~~~g~L~~~l--~~~~~~------------------ 518 (667)
.+-.|.+|+.-+.++ ++.-=|++-.+|++ .....++|||++|-.+.+.. ......
T Consensus 204 ~ElDy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~g~d~k~ia~~~~~~f~~q~~~ 283 (517)
T COG0661 204 EELDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLR 283 (517)
T ss_pred HHhCHHHHHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 112355666655554 34444555555554 56678999999998887653 221111
Q ss_pred ---cccccccCCeeecCCCceEEecccccccccC
Q 042735 519 ---EELDISSKNVLLDLEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 519 ---~~~dlk~~NiLld~~~~~kl~DFGla~~~~~ 549 (667)
-|-|..|.||+++.+|+.-+-|||+.....+
T Consensus 284 dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~ 317 (517)
T COG0661 284 DGFFHADPHPGNILVRSDGRIVLLDFGIVGRLDP 317 (517)
T ss_pred cCccccCCCccceEEecCCcEEEEcCcceecCCH
Confidence 1239999999999999999999999876543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.6e-05 Score=55.09 Aligned_cols=38 Identities=39% Similarity=0.537 Sum_probs=32.7
Q ss_pred CCCCEEEccCccccccCCccccCCCCCCeeeccccccce
Q 042735 27 KSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSG 65 (667)
Q Consensus 27 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 65 (667)
++|++|+|++|+|+ .+|..+++|++|++|++++|+|+.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999999999 567789999999999999999974
|
... |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.9e-06 Score=80.05 Aligned_cols=239 Identities=17% Similarity=0.142 Sum_probs=143.6
Q ss_pred CCCCCCEEEccCccccccCC----ccccCCCCCCeeecccccc---ceeCCCCCcccccCEEEcccccccccCCccccCC
Q 042735 25 NLKSLVKLGLGGNQFRGSLP----SSVGNLSSLRYLFLFENNL---SGSIPPSVGNLMLTVLALENNHFTGNLRHNICRN 97 (667)
Q Consensus 25 ~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~l---~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 97 (667)
.+..+..++||+|.|...-- ..+.+-.+|+..++++-.. ...+|..+. .+-..+.++
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~----------------~Ll~aLlkc 91 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLV----------------MLLKALLKC 91 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHH----------------HHHHHHhcC
Confidence 36677777777777763222 2334445666666554311 111121111 111234455
Q ss_pred CCccEEEeeCcccccccCc----cCCCCCCCcEEEccCCccccccch-------------hhhcCCCCCEEECcCCccCC
Q 042735 98 GALERVIVGGNHFRGPIPK----CLRNCPNLVRISLEGNNMRGTISE-------------AFGIYLNLTFLDISDNNFFG 160 (667)
Q Consensus 98 ~~L~~L~l~~n~~~~~~p~----~l~~l~~L~~L~L~~n~~~~~~~~-------------~~~~l~~L~~L~L~~n~l~~ 160 (667)
+.|+..+++.|.|....|. -++.-+.|.+|.|++|.+.-.--. -...-+.|++.....|++..
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence 6666666666666555553 345667888888888876321111 12355789999999998742
Q ss_pred ccC----ccCCCCCCCCEEEccCCcCCCC-----cCccccCCCCcCeeeccCCccccc----CCccccCCcccceeeccc
Q 042735 161 EIA----SNWGKCPKLSTLNVSMNNITRS-----IPLEIGNLSTLNEFDLSLNHIVGK----IPKEFGKLNSLTKLILRG 227 (667)
Q Consensus 161 ~~~----~~~~~l~~L~~L~L~~n~l~~~-----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~ 227 (667)
-.. ..+..-..|+.+.+.+|.|... .-..+..+.+|+.|||.+|.++.. +...+..++.|+.|.+.+
T Consensus 172 gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 172 GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence 111 1223335789999999987532 011245678999999999988632 234466778899999999
Q ss_pred ccccccCccc----cc--CCCCCCeeeccCCcCCccc------hhhh-hcccCCCeecCCCccCc
Q 042735 228 NQLIGHLPSE----IG--SLTKLEFLNLSTNRFSSLI------PESL-GNLLKLHYLDLSKYQFI 279 (667)
Q Consensus 228 n~l~~~~p~~----~~--~l~~L~~L~Ls~N~l~~~~------p~~~-~~l~~L~~L~ls~n~~~ 279 (667)
|-++..-..+ |. ..++|..|-..+|...+-+ |... .+++-|..|.+.+|++.
T Consensus 252 Clls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 252 CLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 9776322221 22 3578999999998775432 2221 24667778888888753
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.8e-06 Score=73.99 Aligned_cols=103 Identities=20% Similarity=0.167 Sum_probs=50.3
Q ss_pred cEEeccCCcCcCC--CCccccCCCCCCEEEccCccccccCCcccc-CCCCCCeeeccccccceeCCCCCcc-cccCEEEc
Q 042735 6 RELHLRDNYLTGL--IPTETWNLKSLVKLGLGGNQFRGSLPSSVG-NLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLAL 81 (667)
Q Consensus 6 ~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L 81 (667)
-.++|+++.+..+ .+........|...+|++|.+. .+|..|. ..+-++.|+|++|.|+ .+|..+.. ..|+.|++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 3455555555422 1122233444555566666655 3444333 3335566666666655 34444444 23666666
Q ss_pred ccccccccCCccccCCCCccEEEeeCcccc
Q 042735 82 ENNHFTGNLRHNICRNGALERVIVGGNHFR 111 (667)
Q Consensus 82 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 111 (667)
+.|.+.. .|.-+..+.++..|+..+|...
T Consensus 108 ~~N~l~~-~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNPLNA-EPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccCcccc-chHHHHHHHhHHHhcCCCCccc
Confidence 6665542 2333444555555555555543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 667 | ||||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 1e-28 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 7e-10 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 2e-28 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 7e-10 | ||
| 3tl8_A | 349 | The Avrptob-Bak1 Complex Reveals Two Structurally S | 8e-19 | ||
| 3uim_A | 326 | Structural Basis For The Impact Of Phosphorylation | 2e-18 | ||
| 2qkw_B | 321 | Structural Basis For Activation Of Plant Immunity B | 6e-17 | ||
| 3hgk_A | 327 | Crystal Structure Of Effect Protein Avrptob Complex | 4e-16 | ||
| 3p86_A | 309 | Crystal Structure Of Ctr1 Kinase Domain Mutant D676 | 9e-15 | ||
| 2nry_A | 307 | Crystal Structure Of Irak-4 Length = 307 | 1e-14 | ||
| 3ppz_A | 309 | Crystal Structure Of Ctr1 Kinase Domain In Complex | 3e-14 | ||
| 2nru_A | 307 | Crystal Structure Of Irak-4 Length = 307 | 3e-14 | ||
| 2oib_A | 301 | Crystal Structure Of Irak4 Kinase Domain Apo Form L | 5e-14 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 6e-14 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 3e-10 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 4e-04 | ||
| 3sxr_A | 268 | Crystal Structure Of Bmx Non-Receptor Tyrosine Kina | 2e-13 | ||
| 2o8y_A | 298 | Apo Irak4 Kinase Domain Length = 298 | 6e-13 | ||
| 3com_A | 314 | Crystal Structure Of Mst1 Kinase Length = 314 | 7e-12 | ||
| 3v5j_A | 266 | Crystal Structure Of Interleukin-2 Inducible T-Cell | 2e-11 | ||
| 3miy_A | 266 | X-Ray Crystal Structure Of Itk Complexed With Sunit | 2e-11 | ||
| 1sm2_A | 264 | Crystal Structure Of The Phosphorylated Interleukin | 2e-11 | ||
| 4hct_A | 269 | Crystal Structure Of Itk In Complex With Compound 5 | 2e-11 | ||
| 3pyy_A | 298 | Discovery And Characterization Of A Cell-Permeable, | 3e-11 | ||
| 3qgw_A | 286 | Crystal Structure Of Itk Kinase Bound To An Inhibit | 4e-11 | ||
| 3q4z_A | 306 | Structure Of Unphosphorylated Pak1 Kinase Domain Le | 6e-11 | ||
| 3dk7_A | 277 | Crystal Structure Of Mutant Abl Kinase Domain In Co | 6e-11 | ||
| 1f3m_C | 297 | Crystal Structure Of Human SerineTHREONINE KINASE P | 7e-11 | ||
| 3q52_A | 306 | Structure Of Phosphorylated Pak1 Kinase Domain Leng | 7e-11 | ||
| 3fxz_A | 297 | Crystal Structure Of Pak1 Kinase Domain With Ruthen | 9e-11 | ||
| 2fo0_A | 495 | Organization Of The Sh3-Sh2 Unit In Active And Inac | 9e-11 | ||
| 2wtw_A | 285 | Aurora-A Inhibitor Structure (2nd Crystal Form) Len | 9e-11 | ||
| 1yhv_A | 297 | Crystal Structure Of Pak1 Kinase Domain With Two Po | 9e-11 | ||
| 3t9t_A | 267 | Crystal Structure Of Btk Mutant (F435t,K596r) Compl | 9e-11 | ||
| 2e2b_A | 293 | Crystal Structure Of The C-Abl Kinase Domain In Com | 1e-10 | ||
| 2g1t_A | 287 | A Src-Like Inactive Conformation In The Abl Tyrosin | 1e-10 | ||
| 2hzi_A | 277 | Abl Kinase Domain In Complex With Pd180970 Length = | 1e-10 | ||
| 3qri_A | 277 | The Crystal Structure Of Human Abl1 Kinase Domain I | 1e-10 | ||
| 1opl_A | 537 | Structural Basis For The Auto-Inhibition Of C-Abl T | 1e-10 | ||
| 2qoh_A | 288 | Crystal Structure Of Abl Kinase Bound With Ppy-a Le | 1e-10 | ||
| 2hiw_A | 287 | Crystal Structure Of Inactive Conformation Abl Kina | 1e-10 | ||
| 3qrj_A | 277 | The Crystal Structure Of Human Abl1 Kinase Domain T | 1e-10 | ||
| 2hz0_A | 270 | Abl Kinase Domain In Complex With Nvp-Aeg082 Length | 1e-10 | ||
| 2z60_A | 288 | Crystal Structure Of The T315i Mutant Of Abl Kinase | 1e-10 | ||
| 2f4j_A | 287 | Structure Of The Kinase Domain Of An Imatinib-Resis | 1e-10 | ||
| 1opk_A | 495 | Structural Basis For The Auto-Inhibition Of C-Abl T | 1e-10 | ||
| 2gqg_A | 278 | X-Ray Crystal Structure Of Dasatinib (Bms-354825) B | 1e-10 | ||
| 1jpa_A | 312 | Crystal Structure Of Unphosphorylated Ephb2 Recepto | 1e-10 | ||
| 3cd3_A | 377 | Crystal Structure Of Phosphorylated Human Feline Sa | 1e-10 | ||
| 2hyy_A | 273 | Human Abl Kinase Domain In Complex With Imatinib (S | 1e-10 | ||
| 2g2f_A | 287 | A Src-Like Inactive Conformation In The Abl Tyrosin | 1e-10 | ||
| 3oxz_A | 284 | Crystal Structure Of Abl Kinase Domain Bound With A | 1e-10 | ||
| 3oy3_A | 284 | Crystal Structure Of Abl T315i Mutant Kinase Domain | 1e-10 | ||
| 1fpu_A | 293 | Crystal Structure Of Abl Kinase Domain In Complex W | 1e-10 | ||
| 2v7a_A | 286 | Crystal Structure Of The T315i Abl Mutant In Comple | 1e-10 | ||
| 3nrm_A | 283 | Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito | 2e-10 | ||
| 2wtv_A | 285 | Aurora-A Inhibitor Structure Length = 285 | 2e-10 | ||
| 3h9r_A | 330 | Crystal Structure Of The Kinase Domain Of Type I Ac | 2e-10 | ||
| 3bkb_A | 377 | Crystal Structure Of Human Feline Sarcoma Viral Onc | 2e-10 | ||
| 3v5q_A | 297 | Discovery Of A Selective Trk Inhibitor With Efficac | 2e-10 | ||
| 2wqe_A | 262 | Structure Of S155r Aurora-A Somatic Mutant Length = | 2e-10 | ||
| 3h0y_A | 268 | Aurora A In Complex With A Bisanilinopyrimidine Len | 2e-10 | ||
| 4dym_A | 301 | Crystal Structure Of The Acvr1 Kinase Domain In Com | 3e-10 | ||
| 3dk3_A | 293 | Crystal Structure Of Mutant Abl Kinase Domain In Co | 3e-10 | ||
| 3mtf_A | 301 | Crystal Structure Of The Acvr1 Kinase In Complex Wi | 3e-10 | ||
| 4aoj_A | 329 | Human Trka In Complex With The Inhibitor Az-23 Leng | 4e-10 | ||
| 1mq4_A | 272 | Crystal Structure Of Aurora-A Protein Kinase Length | 4e-10 | ||
| 4f0i_A | 300 | Crystal Structure Of Apo Trka Length = 300 | 5e-10 | ||
| 4f0f_A | 287 | Crystal Structure Of The Roco4 Kinase Domain Bound | 5e-10 | ||
| 2j4z_A | 306 | Structure Of Aurora-2 In Complex With Pha-680626 Le | 5e-10 | ||
| 2j50_A | 280 | Structure Of Aurora-2 In Complex With Pha-739358 Le | 5e-10 | ||
| 2xru_A | 280 | Aurora-A T288e Complexed With Pha-828300 Length = 2 | 5e-10 | ||
| 4gt5_A | 306 | Crystal Structure Of The Inactive Trka Kinase Domai | 6e-10 | ||
| 3o50_A | 267 | Crystal Structure Of Benzamide 9 Bound To Auroraa L | 6e-10 | ||
| 2x6d_A | 285 | Aurora-A Bound To An Inhibitor Length = 285 | 6e-10 | ||
| 2w1d_A | 275 | Structure Determination Of Aurora Kinase In Complex | 6e-10 | ||
| 3e5a_A | 268 | Crystal Structure Of Aurora A In Complex With Vx-68 | 6e-10 | ||
| 2xng_A | 283 | Structure Of Aurora-A Bound To A Selective Imidazop | 6e-10 | ||
| 4aw5_A | 291 | Complex Of The Ephb4 Kinase Domain With An Oxindole | 6e-10 | ||
| 3dk6_A | 293 | Crystal Structure Of Mutant Abl Kinase Domain In Co | 6e-10 | ||
| 3coh_A | 268 | Crystal Structure Of Aurora-A In Complex With A Pen | 7e-10 | ||
| 2vwu_A | 302 | Ephb4 Kinase Domain Inhibitor Complex Length = 302 | 7e-10 | ||
| 2hen_A | 286 | Crystal Structure Of The Ephb2 Receptor Kinase Doma | 7e-10 | ||
| 1muo_A | 297 | Crystal Structure Of Aurora-2, An Oncogenic Serine- | 7e-10 | ||
| 2dwb_A | 285 | Aurora-A Kinase Complexed With Amppnp Length = 285 | 8e-10 | ||
| 4f1o_A | 287 | Crystal Structure Of The L1180t Mutant Roco4 Kinase | 8e-10 | ||
| 3s95_A | 310 | Crystal Structure Of The Human Limk1 Kinase Domain | 8e-10 | ||
| 2c6d_A | 275 | Aurora A Kinase Activated Mutant (T287d) In Complex | 9e-10 | ||
| 3r21_A | 271 | Design, Synthesis, And Biological Evaluation Of Pyr | 1e-09 | ||
| 2c6e_A | 283 | Aurora A Kinase Activated Mutant (T287d) In Complex | 1e-09 | ||
| 3unz_A | 279 | Aurora A In Complex With Rpm1679 Length = 279 | 1e-09 | ||
| 3fdn_A | 279 | Structure-Based Drug Design Of Novel Aurora Kinase | 1e-09 | ||
| 3lau_A | 287 | Crystal Structure Of Aurora2 Kinase In Complex With | 1e-09 | ||
| 3ha6_A | 268 | Crystal Structure Of Aurora A In Complex With Tpx2 | 1e-09 | ||
| 3kul_B | 325 | Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep | 1e-09 | ||
| 2w1c_A | 275 | Structure Determination Of Aurora Kinase In Complex | 1e-09 | ||
| 1ol5_A | 282 | Structure Of Aurora-A 122-403, Phosphorylated On Th | 1e-09 | ||
| 2bmc_A | 306 | Aurora-2 T287d T288d Complexed With Pha-680632 Leng | 1e-09 | ||
| 2ogv_A | 317 | Crystal Structure Of The Autoinhibited Human C-Fms | 2e-09 | ||
| 3qbn_A | 281 | Structure Of Human Aurora A In Complex With A Diami | 2e-09 | ||
| 2xne_A | 272 | Structure Of Aurora-A Bound To An Imidazopyrazine I | 2e-09 | ||
| 2qok_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f: | 2e-09 | ||
| 3kul_A | 325 | Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep | 2e-09 | ||
| 3d14_A | 272 | Crystal Structure Of Mouse Aurora A (Asn186->gly, L | 2e-09 | ||
| 3lcd_A | 329 | Inhibitor Bound To A Dfg-In Structure Of The Kinase | 2e-09 | ||
| 1ol6_A | 282 | Structure Of Unphosphorylated D274n Mutant Of Auror | 3e-09 | ||
| 4f1m_A | 287 | Crystal Structure Of The G1179s Roco4 Kinase Domain | 3e-09 | ||
| 3gvu_A | 292 | The Crystal Structure Of Human Abl2 In Complex With | 3e-09 | ||
| 3dzq_A | 361 | Human Epha3 Kinase Domain In Complex With Inhibitor | 4e-09 | ||
| 2qoc_A | 344 | Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp | 4e-09 | ||
| 3daj_A | 272 | Crystal Structure Of Aurora A Complexed With An Inh | 4e-09 | ||
| 2gsf_A | 373 | The Human Epha3 Receptor Tyrosine Kinase And Juxtam | 4e-09 | ||
| 3fxx_A | 371 | Human Epha3 Kinase And Juxtamembrane Region Bound T | 4e-09 | ||
| 2qoi_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f: | 4e-09 | ||
| 2qof_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f | 4e-09 | ||
| 2qod_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y602f | 4e-09 | ||
| 1yoj_A | 283 | Crystal Structure Of Src Kinase Domain Length = 283 | 5e-09 | ||
| 2qol_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596:y | 5e-09 | ||
| 2qoo_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f: | 6e-09 | ||
| 2dq7_X | 283 | Crystal Structure Of Fyn Kinase Domain Complexed Wi | 6e-09 | ||
| 2vwi_A | 303 | Structure Of The Osr1 Kinase, A Hypertension Drug T | 7e-09 | ||
| 3dak_A | 290 | Crystal Structure Of Domain-Swapped Osr1 Kinase Dom | 7e-09 | ||
| 2qon_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f: | 7e-09 | ||
| 4gs6_A | 315 | Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz | 8e-09 | ||
| 4fk3_A | 292 | B-Raf Kinase V600e Oncogenic Mutant In Complex With | 1e-08 | ||
| 2eva_A | 307 | Structural Basis For The Interaction Of Tak1 Kinase | 1e-08 | ||
| 2vrx_A | 285 | Structure Of Aurora B Kinase In Complex With Zm4474 | 1e-08 | ||
| 3og7_A | 289 | B-Raf Kinase V600e Oncogenic Mutant In Complex With | 1e-08 | ||
| 2bfx_B | 284 | Mechanism Of Aurora-B Activation By Incenp And Inhi | 1e-08 | ||
| 3c4c_A | 280 | B-Raf Kinase In Complex With Plx4720 Length = 280 | 2e-08 | ||
| 2bfy_A | 284 | Complex Of Aurora-B With Incenp And Hesperidin. Len | 2e-08 | ||
| 3pix_A | 274 | Crystal Structure Of Btk Kinase Domain Complexed Wi | 2e-08 | ||
| 2i1m_A | 333 | Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An | 2e-08 | ||
| 3g6h_A | 286 | Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma | 2e-08 | ||
| 3ocs_A | 271 | Crystal Structure Of Bruton's Tyrosine Kinase In Co | 2e-08 | ||
| 3gen_A | 283 | The 1.6 A Crystal Structure Of Human Bruton's Tyros | 2e-08 | ||
| 2hel_A | 306 | Crystal Structure Of A Mutant Epha4 Kinase Domain ( | 3e-08 | ||
| 3p08_A | 267 | Crystal Structure Of The Human Btk Kinase Domain Le | 3e-08 | ||
| 3k54_A | 283 | Structures Of Human Bruton's Tyrosine Kinase In Act | 3e-08 | ||
| 2qob_A | 344 | Human Epha3 Kinase Domain, Base Structure Length = | 3e-08 | ||
| 3oez_A | 286 | Crystal Structure Of The L317i Mutant Of The Chicke | 3e-08 | ||
| 1k2p_A | 263 | Crystal Structure Of Bruton's Tyrosine Kinase Domai | 4e-08 | ||
| 3geq_A | 286 | Structural Basis For The Chemical Rescue Of Src Kin | 4e-08 | ||
| 2qo7_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Dephos | 4e-08 | ||
| 3dtc_A | 271 | Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp | 4e-08 | ||
| 2jav_A | 279 | Human Kinase With Pyrrole-Indolinone Ligand Length | 4e-08 | ||
| 3bea_A | 333 | Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A P | 5e-08 | ||
| 3dqw_A | 286 | C-Src Kinase Domain Thr338ile Mutant In Complex Wit | 5e-08 | ||
| 1mqb_A | 333 | Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro | 6e-08 | ||
| 1fmk_A | 452 | Crystal Structure Of Human Tyrosine-Protein Kinase | 6e-08 | ||
| 2oiq_A | 286 | Crystal Structure Of Chicken C-Src Kinase Domain In | 7e-08 | ||
| 2r2p_A | 295 | Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep | 7e-08 | ||
| 1y57_A | 452 | Structure Of Unphosphorylated C-Src In Complex With | 7e-08 | ||
| 3svv_A | 286 | Crystal Structure Of T338c C-Src Covalently Bound T | 7e-08 | ||
| 2bdf_A | 279 | Src Kinase In Complex With Inhibitor Ap23451 Length | 7e-08 | ||
| 1k9a_A | 450 | Crystal Structure Analysis Of Full-Length Carboxyl- | 8e-08 | ||
| 1v0o_A | 288 | Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho | 8e-08 | ||
| 1yol_A | 283 | Crystal Structure Of Src Kinase Domain In Complex W | 9e-08 | ||
| 3d7u_B | 277 | Structural Basis For The Recognition Of C-Src By It | 9e-08 | ||
| 1v0b_A | 288 | Crystal Structure Of The T198a Mutant Of Pfpk5 Leng | 9e-08 | ||
| 2h8h_A | 535 | Src Kinase In Complex With A Quinazoline Inhibitor | 9e-08 | ||
| 1ksw_A | 452 | Structure Of Human C-Src Tyrosine Kinase (Thr338gly | 9e-08 | ||
| 2xik_A | 294 | Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K | 1e-07 | ||
| 1yi6_A | 276 | C-Term Tail Segment Of Human Tyrosine Kinase (258-5 | 1e-07 | ||
| 3d7t_A | 269 | Structural Basis For The Recognition Of C-Src By It | 1e-07 | ||
| 3u4w_A | 275 | Src In Complex With Dna-Templated Macrocyclic Inhib | 1e-07 | ||
| 2xyu_A | 285 | Crystal Structure Of Epha4 Kinase Domain In Complex | 1e-07 | ||
| 3d7u_A | 263 | Structural Basis For The Recognition Of C-Src By It | 1e-07 | ||
| 2y6m_A | 291 | Crystal Structure Of Epha4 Kinase Domain Length = 2 | 1e-07 | ||
| 2w5a_A | 279 | Human Nek2 Kinase Adp-Bound Length = 279 | 1e-07 | ||
| 1ob3_A | 288 | Structure Of P. Falciparum Pfpk5 Length = 288 | 1e-07 | ||
| 2qq7_A | 286 | Crystal Structure Of Drug Resistant Src Kinase Doma | 1e-07 | ||
| 3lco_A | 324 | Inhibitor Bound To A Dfg-Out Structure Of The Kinas | 1e-07 | ||
| 2i0v_A | 335 | C-Fms Tyrosine Kinase In Complex With A Quinolone I | 1e-07 | ||
| 1byg_A | 278 | Kinase Domain Of Human C-Terminal Src Kinase (Csk) | 1e-07 | ||
| 3oct_A | 265 | Crystal Structure Of Bruton's Tyrosine Kinase Mutan | 2e-07 | ||
| 2hwo_A | 286 | Crystal Structure Of Src Kinase Domain In Complex W | 2e-07 | ||
| 3ggf_A | 301 | Crystal Structure Of Human SerineTHREONINE-Protein | 2e-07 | ||
| 3my0_A | 305 | Crystal Structure Of The Acvrl1 (Alk1) Kinase Domai | 2e-07 | ||
| 1uwj_A | 276 | The Complex Of Mutant V599e B-raf And Bay439006 Len | 2e-07 | ||
| 2ptk_A | 453 | Chicken Src Tyrosine Kinase Length = 453 | 3e-07 | ||
| 3idp_A | 300 | B-Raf V600e Kinase Domain In Complex With An Aminoi | 3e-07 | ||
| 3eyg_A | 290 | Crystal Structures Of Jak1 And Jak2 Inhibitor Compl | 3e-07 | ||
| 4fr4_A | 384 | Crystal Structure Of Human SerineTHREONINE-Protein | 3e-07 | ||
| 4h58_A | 275 | Braf In Complex With Compound 3 Length = 275 | 3e-07 | ||
| 4g9r_A | 307 | B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr | 3e-07 | ||
| 4fif_A | 346 | Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid | 4e-07 | ||
| 4e4l_A | 302 | Jak1 Kinase (Jh1 Domain) In Complex With Compound 3 | 4e-07 | ||
| 1uwh_A | 276 | The Complex Of Wild Type B-Raf And Bay439006 Length | 4e-07 | ||
| 2fb8_A | 281 | Structure Of The B-Raf Kinase Domain Bound To Sb-59 | 4e-07 | ||
| 3q96_A | 282 | B-Raf Kinase Domain In Complex With A Tetrahydronap | 4e-07 | ||
| 4af3_A | 292 | Human Aurora B Kinase In Complex With Incenp And Vx | 5e-07 | ||
| 4dbn_A | 284 | Crystal Structure Of The Kinase Domain Of Human B-R | 5e-07 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 5e-07 | ||
| 3d4q_A | 307 | Pyrazole-Based Inhibitors Of B-Raf Kinase Length = | 6e-07 | ||
| 4fie_A | 423 | Full-Length Human Pak4 Length = 423 | 6e-07 | ||
| 3ii5_A | 306 | The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi | 6e-07 | ||
| 2c30_A | 321 | Crystal Structure Of The Human P21-Activated Kinase | 6e-07 | ||
| 4a4x_A | 279 | Nek2-Ede Bound To Cct248662 Length = 279 | 7e-07 | ||
| 2hk5_A | 270 | Hck Kinase In Complex With Lck Targetted Inhibitor | 7e-07 | ||
| 4asz_A | 299 | Crystal Structure Of Apo Trkb Kinase Domain Length | 7e-07 | ||
| 2xa4_A | 298 | Inhibitors Of Jak2 Kinase Domain Length = 298 | 9e-07 | ||
| 1qcf_A | 454 | Crystal Structure Of Hck In Complex With A Src Fami | 1e-06 | ||
| 2ayp_A | 269 | Crystal Structure Of Chk1 With An Indol Inhibitor L | 2e-06 | ||
| 4fsy_A | 279 | Crystal Structure Of The Chk1 Length = 279 | 2e-06 | ||
| 2br1_A | 297 | Structure-Based Design Of Novel Chk1 Inhibitors: In | 2e-06 | ||
| 1ia8_A | 289 | The 1.7 A Crystal Structure Of Human Cell Cycle Che | 2e-06 | ||
| 1zlt_A | 295 | Crystal Structure Of Chk1 Complexed With A Hymenald | 2e-06 | ||
| 2e9v_A | 268 | Structure Of H-Chk1 Complexed With A859017 Length = | 2e-06 | ||
| 4fsz_A | 279 | Crystal Structure Of The Chk1 Length = 279 | 2e-06 | ||
| 2ydj_A | 276 | Discovery Of Checkpoint Kinase Inhibitor Azd7762 By | 2e-06 | ||
| 2ghg_A | 269 | H-Chk1 Complexed With A431994 Length = 269 | 2e-06 | ||
| 4aaa_A | 331 | Crystal Structure Of The Human Cdkl2 Kinase Domain | 2e-06 | ||
| 2r0u_A | 323 | Crystal Structure Of Chek1 In Complex With Inhibito | 2e-06 | ||
| 2x8e_A | 276 | Discovery Of A Novel Class Of Triazolones As Checkp | 2e-06 | ||
| 2hog_A | 322 | Crystal Structure Of Chek1 In Complex With Inhibito | 2e-06 | ||
| 2bva_A | 292 | Crystal Structure Of The Human P21-Activated Kinase | 2e-06 | ||
| 1zys_A | 273 | Co-Crystal Structure Of Checkpoint Kinase Chk1 With | 2e-06 | ||
| 2cdz_A | 303 | Crystal Structure Of The Human P21-Activated Kinase | 2e-06 | ||
| 2x4z_A | 296 | Crystal Structure Of The Human P21-Activated Kinase | 2e-06 | ||
| 3jvr_A | 271 | Characterization Of The Chk1 Allosteric Inhibitor B | 2e-06 | ||
| 3io7_A | 313 | 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel | 2e-06 | ||
| 4fst_A | 269 | Crystal Structure Of The Chk1 Length = 269 | 2e-06 | ||
| 2q0n_A | 301 | Structure Of Human P21 Activating Kinase 4 (Pak4) I | 2e-06 | ||
| 4fsm_A | 279 | Crystal Structure Of The Chk1 Length = 279 | 2e-06 | ||
| 4fsn_A | 278 | Crystal Structure Of The Chk1 Length = 278 | 2e-06 | ||
| 3ot3_A | 273 | X-Ray Crystal Structure Of Compound 22k Bound To Hu | 2e-06 | ||
| 3jy9_A | 311 | Janus Kinase 2 Inhibitors Length = 311 | 2e-06 | ||
| 4ft3_A | 279 | Crystal Structure Of The Chk1 Length = 279 | 3e-06 | ||
| 4fsw_A | 279 | Crystal Structure Of The Chk1 Length = 279 | 3e-06 | ||
| 3ugc_A | 295 | Structural Basis Of Jak2 Inhibition By The Type Ii | 3e-06 | ||
| 2omv_A | 461 | Crystal Structure Of Inla S192n Y369s/hec1 Complex | 3e-06 | ||
| 3zhp_C | 294 | Human Mst3 (stk24) In Complex With Mo25beta Length | 3e-06 | ||
| 1fot_A | 318 | Structure Of The Unliganded Camp-Dependent Protein | 3e-06 | ||
| 4bbe_A | 298 | Aminoalkylpyrimidine Inhibitor Complexes With Jak2 | 3e-06 | ||
| 3lpb_A | 295 | Crystal Structure Of Jak2 Complexed With A Potent 2 | 3e-06 | ||
| 2og8_A | 265 | Crystal Structure Of Aminoquinazoline 36 Bound To L | 3e-06 | ||
| 3q32_A | 301 | Structure Of Janus Kinase 2 With A Pyrrolotriazine | 3e-06 | ||
| 3bys_A | 277 | Co-Crystal Structure Of Lck And Aminopyrimidine Ami | 4e-06 | ||
| 2b7a_A | 293 | The Structural Basis Of Janus Kinase 2 Inhibition B | 4e-06 | ||
| 2w1i_A | 326 | Structure Determination Of Aurora Kinase In Complex | 4e-06 | ||
| 3e62_A | 293 | Fragment Based Discovery Of Jak-2 Inhibitors Length | 4e-06 | ||
| 2ofv_A | 277 | Crystal Structure Of Aminoquinazoline 1 Bound To Lc | 4e-06 | ||
| 3tjc_A | 298 | Co-Crystal Structure Of Jak2 With Thienopyridine 8 | 4e-06 | ||
| 2pl0_A | 289 | Lck Bound To Imatinib Length = 289 | 4e-06 | ||
| 2of2_A | 271 | Crystal Structure Of Furanopyrimidine 8 Bound To Lc | 4e-06 | ||
| 4hge_A | 300 | Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 | 4e-06 | ||
| 4aqc_A | 301 | Triazolopyridine-Based Inhibitor Of Janus Kinase 2 | 4e-06 | ||
| 3rvg_A | 303 | Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido | 4e-06 | ||
| 4e4m_A | 302 | Jak2 Kinase (Jh1 Domain) In Complex With Compound 3 | 4e-06 | ||
| 4fsu_A | 279 | Crystal Structure Of The Chk1 Length = 279 | 5e-06 | ||
| 3a4o_X | 286 | Lyn Kinase Domain Length = 286 | 5e-06 | ||
| 3srv_A | 277 | Crystal Structure Of Spleen Tyrosine Kinase (Syk) I | 6e-06 | ||
| 3ubd_A | 304 | Structure Of N-Terminal Domain Of Rsk2 Kinase In Co | 6e-06 | ||
| 4fl3_A | 635 | Structural And Biophysical Characterization Of The | 6e-06 | ||
| 2rei_A | 318 | Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep | 6e-06 | ||
| 2omz_A | 466 | Crystal Structure Of Inla Y369a/hec1 Complex Length | 6e-06 | ||
| 2f57_A | 317 | Crystal Structure Of The Human P21-activated Kinase | 6e-06 | ||
| 4fl2_A | 636 | Structural And Biophysical Characterization Of The | 6e-06 | ||
| 3g51_A | 325 | Structural Diversity Of The Active Conformation Of | 7e-06 | ||
| 4el9_A | 305 | Structure Of N-Terminal Kinase Domain Of Rsk2 With | 7e-06 | ||
| 3ckw_A | 304 | Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3 | 7e-06 | ||
| 3lck_A | 271 | The Kinase Domain Of Human Lymphocyte Kinase (Lck), | 7e-06 | ||
| 3g2f_A | 336 | Crystal Structure Of The Kinase Domain Of Bone Morp | 7e-06 | ||
| 3bym_A | 272 | X-Ray Co-Crystal Structure Aminobenzimidazole Triaz | 8e-06 | ||
| 4f4p_A | 273 | Syk In Complex With Ligand Lasw836 Length = 273 | 8e-06 | ||
| 3ckx_A | 304 | Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3 | 8e-06 | ||
| 3srv_B | 277 | Crystal Structure Of Spleen Tyrosine Kinase (Syk) I | 8e-06 | ||
| 1xba_A | 291 | Crystal Structure Of Apo Syk Tyrosine Kinase Domain | 8e-06 | ||
| 4dfl_A | 274 | Crystal Structure Of Spleen Tyrosine Kinase Complex | 9e-06 | ||
| 3emg_A | 291 | Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylami | 9e-06 | ||
| 1qpe_A | 279 | Structural Analysis Of The Lymphocyte-Specific Kina | 9e-06 | ||
| 2ofu_A | 273 | X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam | 9e-06 | ||
| 3a7f_A | 303 | Human Mst3 Kinase Length = 303 | 9e-06 | ||
| 3kxz_A | 287 | The Complex Crystal Structure Of Lck With A Probe M | 9e-06 | ||
| 3kmm_A | 288 | Structure Of Human Lck Kinase With A Small Molecule | 9e-06 | ||
| 3tub_A | 293 | Crystal Structure Of Syk Kinase Domain With 1-(5-(6 | 1e-05 | ||
| 3vf8_A | 299 | Crystal Structure Of Spleen Tyrosine Kinase Syk Cat | 1e-05 | ||
| 2zm1_A | 285 | Crystal Structure Of Imidazo Pyrazin 1 Bound To The | 1e-05 | ||
| 4b8c_D | 727 | Nuclease Module Of The Yeast Ccr4-Not Complex Lengt | 1e-05 | ||
| 2p0c_A | 313 | Catalytic Domain Of The Proto-Oncogene Tyrosine-Pro | 1e-05 | ||
| 1qpd_A | 279 | Structural Analysis Of The Lymphocyte-specific Kina | 1e-05 | ||
| 4e6d_A | 298 | Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W | 1e-05 | ||
| 2o6s_A | 208 | Structural Diversity Of The Hagfish Variable Lympho | 1e-05 | ||
| 1u59_A | 287 | Crystal Structure Of The Zap-70 Kinase Domain In Co | 1e-05 | ||
| 4fmz_A | 347 | Crystal Structure Of An Internalin (Inlf) From List | 2e-05 | ||
| 1ad5_A | 438 | Src Family Kinase Hck-Amp-Pnp Complex Length = 438 | 2e-05 | ||
| 4bc6_A | 293 | Crystal Structure Of Human Serine Threonine Kinase- | 2e-05 | ||
| 1gzk_A | 315 | Molecular Mechanism For The Regulation Of Protein K | 3e-05 | ||
| 3f69_A | 311 | Crystal Structure Of The Mycobacterium Tuberculosis | 3e-05 | ||
| 3f61_A | 311 | Crystal Structure Of M. Tuberculosis Pknb Leu33aspV | 3e-05 | ||
| 1gzn_A | 335 | Structure Of Pkb Kinase Domain Length = 335 | 3e-05 | ||
| 3orm_A | 311 | Mycobacterium Tuberculosis Pknb Kinase Domain D76a | 3e-05 | ||
| 1mrv_A | 339 | Crystal Structure Of An Inactive Akt2 Kinase Domain | 3e-05 | ||
| 2j7t_A | 302 | Crystal Structure Of Human Serine Threonine Kinase- | 3e-05 | ||
| 1o6y_A | 299 | Catalytic Domain Of Pknb Kinase From Mycobacterium | 3e-05 | ||
| 4eqm_A | 294 | Structural Analysis Of Staphylococcus Aureus Serine | 3e-05 | ||
| 1mru_A | 311 | Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob | 3e-05 | ||
| 3q4t_A | 322 | Crystal Structure Of Activin Receptor Type-Iia (Acv | 4e-05 | ||
| 4hvd_A | 314 | Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h | 4e-05 | ||
| 2jdo_A | 342 | Structure Of Pkb-Beta (Akt2) Complexed With Isoquin | 4e-05 | ||
| 3e87_A | 335 | Crystal Structures Of The Kinase Domain Of Akt2 In | 4e-05 | ||
| 1o6l_A | 337 | Crystal Structure Of An Activated Akt/protein Kinas | 4e-05 | ||
| 1o6k_A | 336 | Structure Of Activated Form Of Pkb Kinase Domain S4 | 4e-05 | ||
| 3ori_A | 311 | Mycobacterium Tuberculosis Pknb Kinase Domain L33d | 4e-05 | ||
| 2zv7_A | 279 | Lyn Tyrosine Kinase Domain, Apo Form Length = 279 | 5e-05 | ||
| 2wd1_A | 292 | Human C-Met Kinase In Complex With Azaindole Inhibi | 5e-05 | ||
| 3q6u_A | 308 | Structure Of The Apo Met Receptor Kinase In The Dua | 5e-05 | ||
| 3dkg_A | 317 | Sgx Clone 5698a109kfg1h1 Length = 317 | 5e-05 | ||
| 4gg5_A | 319 | Crystal Structure Of Cmet In Complex With Novel Inh | 6e-05 | ||
| 3dkc_A | 317 | Sgx Clone 5698a65kfg1h1 Length = 317 | 6e-05 | ||
| 2g15_A | 318 | Structural Characterization Of Autoinhibited C-Met | 6e-05 | ||
| 3a4p_A | 319 | Human C-Met Kinase Domain Complexed With 6-Benzylox | 6e-05 | ||
| 2wgj_A | 306 | X-Ray Structure Of Pf-02341066 Bound To The Kinase | 6e-05 | ||
| 3cth_A | 314 | Crystal Structure Of The Tyrosine Kinase Domain Of | 6e-05 | ||
| 3q6w_A | 307 | Structure Of Dually-phosphorylated Met Receptor Kin | 6e-05 | ||
| 3qti_A | 314 | C-Met Kinase In Complex With Nvp-Bvu972 Length = 31 | 6e-05 | ||
| 3lq8_A | 302 | Structure Of The Kinase Domain Of C-Met Bound To Xl | 6e-05 | ||
| 3i5n_A | 309 | Crystal Structure Of C-Met With Triazolopyridazine | 6e-05 | ||
| 1u5q_A | 348 | Crystal Structure Of The Tao2 Kinase Domain: Activa | 6e-05 | ||
| 3sls_A | 304 | Crystal Structure Of Human Mek-1 Kinase In Complex | 7e-05 | ||
| 1r0p_A | 312 | Crystal Structure Of The Tyrosine Kinase Domain Of | 7e-05 | ||
| 2rfn_A | 310 | X-ray Structure Of C-met With Inhibitor. Length = 3 | 7e-05 | ||
| 3f66_A | 298 | Human C-Met Kinase In Complex With Quinoxaline Inhi | 7e-05 | ||
| 3rfs_A | 272 | Design Of A Binding Scaffold Based On Variable Lymp | 7e-05 | ||
| 3pjc_A | 315 | Crystal Structure Of Jak3 Complexed With A Potent A | 8e-05 | ||
| 2gcd_A | 309 | Tao2 Kinase Domain-Staurosporine Structure Length = | 8e-05 | ||
| 3c1x_A | 373 | Crystal Structure Of The Tyrosine Kinase Domain Of | 9e-05 | ||
| 2uv2_A | 287 | Crystal Structure Of Human Ste20-Like Kinase Bound | 9e-05 | ||
| 2qkr_A | 313 | Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5 | 9e-05 | ||
| 3niz_A | 311 | Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5 | 1e-04 | ||
| 2j51_A | 325 | Crystal Structure Of Human Ste20-Like Kinase Bound | 1e-04 | ||
| 2jfm_A | 325 | Crystal Structure Of Human Ste20-Like Kinase (Unlig | 1e-04 | ||
| 3lxk_A | 327 | Structural And Thermodynamic Characterization Of Th | 1e-04 | ||
| 1fvr_A | 327 | Tie2 Kinase Domain Length = 327 | 1e-04 | ||
| 2oo8_X | 317 | Synthesis, Structural Analysis, And Sar Studies Of | 1e-04 | ||
| 3omv_A | 307 | Crystal Structure Of C-Raf (Raf-1) Length = 307 | 1e-04 | ||
| 1p8t_A | 285 | Crystal Structure Of Nogo-66 Receptor Length = 285 | 2e-04 | ||
| 2jfl_A | 325 | Crystal Structure Of Human Ste20-Like Kinase ( Diph | 2e-04 | ||
| 2x7f_A | 326 | Crystal Structure Of The Kinase Domain Of Human Tra | 2e-04 | ||
| 1ozn_A | 285 | 1.5a Crystal Structure Of The Nogo Receptor Ligand | 2e-04 | ||
| 3q5i_A | 504 | Crystal Structure Of Pbanka_031420 Length = 504 | 2e-04 | ||
| 2ozo_A | 613 | Autoinhibited Intact Human Zap-70 Length = 613 | 2e-04 | ||
| 4e20_A | 290 | Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda | 2e-04 | ||
| 4e1z_A | 291 | Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda | 2e-04 | ||
| 4an2_A | 301 | Crystal Structures Of Human Mek1 With Carboxamide-B | 2e-04 | ||
| 2omx_A | 462 | Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX | 2e-04 | ||
| 4apc_A | 350 | Crystal Structure Of Human Nima-Related Kinase 1 (N | 2e-04 | ||
| 3uto_A | 573 | Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin- | 3e-04 | ||
| 2z7q_A | 321 | Crystal Structure Of The N-Terminal Kinase Domain O | 3e-04 | ||
| 1o6s_A | 466 | Internalin (Listeria Monocytogenes) E-Cadherin (Hum | 3e-04 | ||
| 4dc2_A | 396 | Structure Of Pkc In Complex With A Substrate Peptid | 3e-04 | ||
| 3g0f_A | 336 | Kit Kinase Domain Mutant D816h In Complex With Suni | 3e-04 | ||
| 3is5_A | 285 | Crystal Structure Of Cdpk Kinase Domain From Toxopl | 3e-04 | ||
| 4fg7_A | 293 | Crystal Structure Of Human Calcium/calmodulin-depen | 3e-04 | ||
| 3kb7_A | 311 | Crystal Structure Of Polo-Like Kinase 1 In Complex | 4e-04 | ||
| 3a8w_A | 345 | Crystal Structure Of Pkciota Kinase Domain Length = | 4e-04 | ||
| 3zh8_A | 349 | A Novel Small Molecule Apkc Inhibitor Length = 349 | 4e-04 | ||
| 1a06_A | 332 | Calmodulin-Dependent Protein Kinase From Rat Length | 4e-04 | ||
| 4ebw_A | 304 | Structure Of Focal Adhesion Kinase Catalytic Domain | 4e-04 | ||
| 2yac_A | 311 | Crystal Structure Of Polo-Like Kinase 1 In Complex | 4e-04 | ||
| 1mp8_A | 281 | Crystal Structure Of Focal Adhesion Kinase (Fak) Le | 4e-04 | ||
| 1koa_A | 491 | Twitchin Kinase Fragment (C.Elegans), Autoregulated | 4e-04 | ||
| 2wqb_A | 324 | Structure Of The Tie2 Kinase Domain In Complex With | 4e-04 | ||
| 1py5_A | 326 | Crystal Structure Of Tgf-Beta Receptor I Kinase Wit | 4e-04 | ||
| 2jed_A | 352 | The Crystal Structure Of The Kinase Domain Of The P | 4e-04 | ||
| 2rku_A | 294 | Structure Of Plk1 In Complex With Bi2536 Length = 2 | 5e-04 | ||
| 1b6c_B | 342 | Crystal Structure Of The Cytoplasmic Domain Of The | 5e-04 | ||
| 3pxk_A | 282 | Focal Adhesion Kinase Catalytic Domain In Complex W | 5e-04 | ||
| 3orn_A | 307 | Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In | 5e-04 | ||
| 2ou7_A | 335 | Structure Of The Catalytic Domain Of Human Polo-Lik | 5e-04 | ||
| 1zrz_A | 364 | Crystal Structure Of The Catalytic Domain Of Atypic | 5e-04 | ||
| 3thb_A | 333 | Structure Of Plk1 Kinase Domain In Complex With A B | 5e-04 | ||
| 3tzm_A | 309 | Tgf-Beta Receptor Type 1 In Complex With Sb431542 L | 5e-04 | ||
| 2v5q_A | 315 | Crystal Structure Of Wild-type Plk-1 Kinase Domain | 5e-04 | ||
| 2wot_A | 306 | Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl) | 5e-04 | ||
| 2jkk_A | 276 | Focal Adhesion Kinase Catalytic Domain In Complex W | 5e-04 | ||
| 2etm_A | 281 | Crystal Structure Of Focal Adhesion Kinase Domain C | 5e-04 | ||
| 1t46_A | 313 | Structural Basis For The Autoinhibition And Sti-571 | 5e-04 | ||
| 2j0m_B | 276 | Crystal Structure A Two-Chain Complex Between The F | 5e-04 | ||
| 1pkg_A | 329 | Structure Of A C-kit Kinase Product Complex Length | 5e-04 | ||
| 2i0e_A | 353 | Structure Of Catalytic Domain Of Human Protein Kina | 5e-04 | ||
| 3tt0_A | 382 | Co-Structure Of Fibroblast Growth Factor Receptor 1 | 5e-04 | ||
| 3lxn_A | 318 | Structural And Thermodynamic Characterization Of Th | 5e-04 | ||
| 3pfq_A | 674 | Crystal Structure And Allosteric Activation Of Prot | 6e-04 | ||
| 1vjy_A | 303 | Crystal Structure Of A Naphthyridine Inhibitor Of H | 6e-04 | ||
| 1t45_A | 331 | Structural Basis For The Autoinhibition And Sti-571 | 6e-04 | ||
| 2y4i_B | 319 | Ksr2-Mek1 Heterodimer Length = 319 | 6e-04 | ||
| 4eut_A | 396 | Structure Of Bx-795 Complexed With Unphosphorylated | 6e-04 | ||
| 3bz3_A | 276 | Crystal Structure Analysis Of Focal Adhesion Kinase | 6e-04 | ||
| 3g0e_A | 336 | Kit Kinase Domain In Complex With Sunitinib Length | 6e-04 | ||
| 4fg9_A | 320 | Crystal Structure Of Human Calcium/calmodulin-depen | 6e-04 | ||
| 4aw2_A | 437 | Crystal Structure Of Cdc42 Binding Protein Kinase A | 6e-04 | ||
| 1rw8_A | 301 | Crystal Structure Of Tgf-Beta Receptor I Kinase Wit | 6e-04 | ||
| 3orx_A | 316 | Pdk1 Mutant Bound To Allosteric Disulfide Fragment | 6e-04 | ||
| 4fg8_A | 315 | Crystal Structure Of Human Calcium/calmodulin-depen | 7e-04 | ||
| 3qfv_A | 415 | Mrck Beta In Complex With Tpca-1 Length = 415 | 7e-04 | ||
| 4g31_A | 299 | Crystal Structure Of Gsk6414 Bound To Perk (R587-R1 | 7e-04 | ||
| 3gqi_A | 326 | Crystal Structure Of Activated Receptor Tyrosine Ki | 7e-04 | ||
| 2jkm_A | 276 | Focal Adhesion Kinase Catalytic Domain In Complex W | 7e-04 | ||
| 2f2u_A | 402 | Crystal Structure Of The Rho-Kinase Kinase Domain L | 7e-04 | ||
| 3tku_A | 433 | Mrck Beta In Complex With Fasudil Length = 433 | 7e-04 | ||
| 3nay_A | 311 | Pdk1 In Complex With Inhibitor Mp6 Length = 311 | 7e-04 | ||
| 3nax_A | 311 | Pdk1 In Complex With Inhibitor Mp7 Length = 311 | 8e-04 | ||
| 4agu_A | 311 | Crystal Structure Of The Human Cdkl1 Kinase Domain | 8e-04 | ||
| 2biy_A | 310 | Structure Of Pdk1-S241a Mutant Kinase Domain Length | 8e-04 | ||
| 3kex_A | 325 | Crystal Structure Of The Catalytically Inactive Kin | 8e-04 | ||
| 2j0k_A | 656 | Crystal Structure Of A Fragment Of Focal Adhesion K | 8e-04 | ||
| 2omt_A | 462 | Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt | 9e-04 | ||
| 3vw6_A | 269 | Crystal Structure Of Human Apoptosis Signal-Regulat | 9e-04 | ||
| 4dfy_A | 371 | Crystal Structure Of R194a Mutant Of Camp-Dependent | 9e-04 | ||
| 3lmg_A | 344 | Crystal Structure Of The Erbb3 Kinase Domain In Com | 9e-04 | ||
| 3e6j_A | 229 | Crystal Structure Of Variable Lymphocyte Receptor ( | 9e-04 |
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349 | Back alignment and structure |
|
| >pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326 | Back alignment and structure |
|
| >pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321 | Back alignment and structure |
|
| >pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327 | Back alignment and structure |
|
| >pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309 | Back alignment and structure |
|
| >pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307 | Back alignment and structure |
|
| >pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309 | Back alignment and structure |
|
| >pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307 | Back alignment and structure |
|
| >pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268 | Back alignment and structure |
|
| >pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298 | Back alignment and structure |
|
| >pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314 | Back alignment and structure |
|
| >pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266 | Back alignment and structure |
|
| >pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266 | Back alignment and structure |
|
| >pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264 | Back alignment and structure |
|
| >pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269 | Back alignment and structure |
|
| >pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298 | Back alignment and structure |
|
| >pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286 | Back alignment and structure |
|
| >pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306 | Back alignment and structure |
|
| >pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277 | Back alignment and structure |
|
| >pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297 | Back alignment and structure |
|
| >pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306 | Back alignment and structure |
|
| >pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297 | Back alignment and structure |
|
| >pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285 | Back alignment and structure |
|
| >pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297 | Back alignment and structure |
|
| >pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267 | Back alignment and structure |
|
| >pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293 | Back alignment and structure |
|
| >pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287 | Back alignment and structure |
|
| >pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277 | Back alignment and structure |
|
| >pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277 | Back alignment and structure |
|
| >pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537 | Back alignment and structure |
|
| >pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288 | Back alignment and structure |
|
| >pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287 | Back alignment and structure |
|
| >pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277 | Back alignment and structure |
|
| >pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270 | Back alignment and structure |
|
| >pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288 | Back alignment and structure |
|
| >pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287 | Back alignment and structure |
|
| >pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495 | Back alignment and structure |
|
| >pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278 | Back alignment and structure |
|
| >pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312 | Back alignment and structure |
|
| >pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377 | Back alignment and structure |
|
| >pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273 | Back alignment and structure |
|
| >pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287 | Back alignment and structure |
|
| >pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284 | Back alignment and structure |
|
| >pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284 | Back alignment and structure |
|
| >pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293 | Back alignment and structure |
|
| >pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286 | Back alignment and structure |
|
| >pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283 | Back alignment and structure |
|
| >pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285 | Back alignment and structure |
|
| >pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 330 | Back alignment and structure |
|
| >pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377 | Back alignment and structure |
|
| >pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297 | Back alignment and structure |
|
| >pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262 | Back alignment and structure |
|
| >pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268 | Back alignment and structure |
|
| >pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex With The Imidazo[1,2-B]pyridazine Inhibitor K00135 Length = 301 | Back alignment and structure |
|
| >pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293 | Back alignment and structure |
|
| >pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2- Aminopyridine Inhibitor Length = 301 | Back alignment and structure |
|
| >pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329 | Back alignment and structure |
|
| >pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272 | Back alignment and structure |
|
| >pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300 | Back alignment and structure |
|
| >pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287 | Back alignment and structure |
|
| >pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306 | Back alignment and structure |
|
| >pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280 | Back alignment and structure |
|
| >pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280 | Back alignment and structure |
|
| >pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306 | Back alignment and structure |
|
| >pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267 | Back alignment and structure |
|
| >pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285 | Back alignment and structure |
|
| >pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275 | Back alignment and structure |
|
| >pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268 | Back alignment and structure |
|
| >pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283 | Back alignment and structure |
|
| >pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291 | Back alignment and structure |
|
| >pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293 | Back alignment and structure |
|
| >pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268 | Back alignment and structure |
|
| >pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302 | Back alignment and structure |
|
| >pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286 | Back alignment and structure |
|
| >pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297 | Back alignment and structure |
|
| >pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285 | Back alignment and structure |
|
| >pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287 | Back alignment and structure |
|
| >pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310 | Back alignment and structure |
|
| >pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275 | Back alignment and structure |
|
| >pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271 | Back alignment and structure |
|
| >pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283 | Back alignment and structure |
|
| >pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279 | Back alignment and structure |
|
| >pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279 | Back alignment and structure |
|
| >pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287 | Back alignment and structure |
|
| >pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268 | Back alignment and structure |
|
| >pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325 | Back alignment and structure |
|
| >pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275 | Back alignment and structure |
|
| >pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282 | Back alignment and structure |
|
| >pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306 | Back alignment and structure |
|
| >pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317 | Back alignment and structure |
|
| >pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281 | Back alignment and structure |
|
| >pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272 | Back alignment and structure |
|
| >pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373 | Back alignment and structure |
|
| >pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325 | Back alignment and structure |
|
| >pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272 | Back alignment and structure |
|
| >pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329 | Back alignment and structure |
|
| >pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282 | Back alignment and structure |
|
| >pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287 | Back alignment and structure |
|
| >pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292 | Back alignment and structure |
|
| >pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361 | Back alignment and structure |
|
| >pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344 | Back alignment and structure |
|
| >pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272 | Back alignment and structure |
|
| >pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373 | Back alignment and structure |
|
| >pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371 | Back alignment and structure |
|
| >pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373 | Back alignment and structure |
|
| >pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373 | Back alignment and structure |
|
| >pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373 | Back alignment and structure |
|
| >pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283 | Back alignment and structure |
|
| >pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373 | Back alignment and structure |
|
| >pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373 | Back alignment and structure |
|
| >pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283 | Back alignment and structure |
|
| >pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303 | Back alignment and structure |
|
| >pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290 | Back alignment and structure |
|
| >pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373 | Back alignment and structure |
|
| >pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315 | Back alignment and structure |
|
| >pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292 | Back alignment and structure |
|
| >pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307 | Back alignment and structure |
|
| >pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285 | Back alignment and structure |
|
| >pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289 | Back alignment and structure |
|
| >pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280 | Back alignment and structure |
|
| >pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284 | Back alignment and structure |
|
| >pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274 | Back alignment and structure |
|
| >pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor Length = 333 | Back alignment and structure |
|
| >pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286 | Back alignment and structure |
|
| >pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271 | Back alignment and structure |
|
| >pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283 | Back alignment and structure |
|
| >pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306 | Back alignment and structure |
|
| >pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267 | Back alignment and structure |
|
| >pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283 | Back alignment and structure |
|
| >pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344 | Back alignment and structure |
|
| >pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286 | Back alignment and structure |
|
| >pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263 | Back alignment and structure |
|
| >pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286 | Back alignment and structure |
|
| >pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373 | Back alignment and structure |
|
| >pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271 | Back alignment and structure |
|
| >pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279 | Back alignment and structure |
|
| >pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor Length = 333 | Back alignment and structure |
|
| >pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286 | Back alignment and structure |
|
| >pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333 | Back alignment and structure |
|
| >pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452 | Back alignment and structure |
|
| >pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286 | Back alignment and structure |
|
| >pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295 | Back alignment and structure |
|
| >pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452 | Back alignment and structure |
|
| >pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286 | Back alignment and structure |
|
| >pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279 | Back alignment and structure |
|
| >pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450 | Back alignment and structure |
|
| >pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288 | Back alignment and structure |
|
| >pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283 | Back alignment and structure |
|
| >pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277 | Back alignment and structure |
|
| >pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288 | Back alignment and structure |
|
| >pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535 | Back alignment and structure |
|
| >pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452 | Back alignment and structure |
|
| >pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294 | Back alignment and structure |
|
| >pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276 | Back alignment and structure |
|
| >pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269 | Back alignment and structure |
|
| >pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275 | Back alignment and structure |
|
| >pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285 | Back alignment and structure |
|
| >pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263 | Back alignment and structure |
|
| >pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291 | Back alignment and structure |
|
| >pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279 | Back alignment and structure |
|
| >pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288 | Back alignment and structure |
|
| >pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286 | Back alignment and structure |
|
| >pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase Domain Of Csf-1r Length = 324 | Back alignment and structure |
|
| >pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone Inhibitor Length = 335 | Back alignment and structure |
|
| >pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278 | Back alignment and structure |
|
| >pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265 | Back alignment and structure |
|
| >pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286 | Back alignment and structure |
|
| >pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301 | Back alignment and structure |
|
| >pdb|3MY0|A Chain A, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound To Ldn- 193189 Length = 305 | Back alignment and structure |
|
| >pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276 | Back alignment and structure |
|
| >pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453 | Back alignment and structure |
|
| >pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300 | Back alignment and structure |
|
| >pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290 | Back alignment and structure |
|
| >pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384 | Back alignment and structure |
|
| >pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275 | Back alignment and structure |
|
| >pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307 | Back alignment and structure |
|
| >pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346 | Back alignment and structure |
|
| >pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302 | Back alignment and structure |
|
| >pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276 | Back alignment and structure |
|
| >pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281 | Back alignment and structure |
|
| >pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282 | Back alignment and structure |
|
| >pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292 | Back alignment and structure |
|
| >pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
| >pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307 | Back alignment and structure |
|
| >pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423 | Back alignment and structure |
|
| >pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306 | Back alignment and structure |
|
| >pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321 | Back alignment and structure |
|
| >pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279 | Back alignment and structure |
|
| >pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270 | Back alignment and structure |
|
| >pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299 | Back alignment and structure |
|
| >pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298 | Back alignment and structure |
|
| >pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454 | Back alignment and structure |
|
| >pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269 | Back alignment and structure |
|
| >pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279 | Back alignment and structure |
|
| >pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297 | Back alignment and structure |
|
| >pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289 | Back alignment and structure |
|
| >pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295 | Back alignment and structure |
|
| >pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268 | Back alignment and structure |
|
| >pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279 | Back alignment and structure |
|
| >pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276 | Back alignment and structure |
|
| >pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269 | Back alignment and structure |
|
| >pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331 | Back alignment and structure |
|
| >pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323 | Back alignment and structure |
|
| >pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276 | Back alignment and structure |
|
| >pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322 | Back alignment and structure |
|
| >pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292 | Back alignment and structure |
|
| >pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273 | Back alignment and structure |
|
| >pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303 | Back alignment and structure |
|
| >pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296 | Back alignment and structure |
|
| >pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271 | Back alignment and structure |
|
| >pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313 | Back alignment and structure |
|
| >pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269 | Back alignment and structure |
|
| >pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301 | Back alignment and structure |
|
| >pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279 | Back alignment and structure |
|
| >pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278 | Back alignment and structure |
|
| >pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273 | Back alignment and structure |
|
| >pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311 | Back alignment and structure |
|
| >pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279 | Back alignment and structure |
|
| >pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279 | Back alignment and structure |
|
| >pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295 | Back alignment and structure |
|
| >pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294 | Back alignment and structure |
|
| >pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318 | Back alignment and structure |
|
| >pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298 | Back alignment and structure |
|
| >pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295 | Back alignment and structure |
|
| >pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265 | Back alignment and structure |
|
| >pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301 | Back alignment and structure |
|
| >pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277 | Back alignment and structure |
|
| >pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293 | Back alignment and structure |
|
| >pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326 | Back alignment and structure |
|
| >pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293 | Back alignment and structure |
|
| >pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277 | Back alignment and structure |
|
| >pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298 | Back alignment and structure |
|
| >pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289 | Back alignment and structure |
|
| >pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271 | Back alignment and structure |
|
| >pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300 | Back alignment and structure |
|
| >pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301 | Back alignment and structure |
|
| >pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303 | Back alignment and structure |
|
| >pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302 | Back alignment and structure |
|
| >pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279 | Back alignment and structure |
|
| >pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286 | Back alignment and structure |
|
| >pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277 | Back alignment and structure |
|
| >pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304 | Back alignment and structure |
|
| >pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635 | Back alignment and structure |
|
| >pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318 | Back alignment and structure |
|
| >pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466 | Back alignment and structure |
|
| >pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317 | Back alignment and structure |
|
| >pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636 | Back alignment and structure |
|
| >pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325 | Back alignment and structure |
|
| >pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305 | Back alignment and structure |
|
| >pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304 | Back alignment and structure |
|
| >pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271 | Back alignment and structure |
|
| >pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A Resolution Length = 336 | Back alignment and structure |
|
| >pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272 | Back alignment and structure |
|
| >pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836 Length = 273 | Back alignment and structure |
|
| >pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304 | Back alignment and structure |
|
| >pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277 | Back alignment and structure |
|
| >pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain Length = 291 | Back alignment and structure |
|
| >pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With A Sulfonamidopyrazine Piperidine Inhibitor Length = 274 | Back alignment and structure |
|
| >pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylaminopyrimidines As Potent Inhibitors Of Spleen Tyrosine Kinase (Syk) Length = 291 | Back alignment and structure |
|
| >pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279 | Back alignment and structure |
|
| >pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273 | Back alignment and structure |
|
| >pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303 | Back alignment and structure |
|
| >pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287 | Back alignment and structure |
|
| >pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288 | Back alignment and structure |
|
| >pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7- Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2- Phenylcyclopropyl)urea Length = 293 | Back alignment and structure |
|
| >pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic Domain With Pyrazolylbenzimidazole Inhibitor 416 Length = 299 | Back alignment and structure |
|
| >pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285 | Back alignment and structure |
|
| >pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727 | Back alignment and structure |
|
| >pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein Kina Length = 313 | Back alignment and structure |
|
| >pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279 | Back alignment and structure |
|
| >pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298 | Back alignment and structure |
|
| >pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208 | Back alignment and structure |
|
| >pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287 | Back alignment and structure |
|
| >pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347 | Back alignment and structure |
|
| >pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438 | Back alignment and structure |
|
| >pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293 | Back alignment and structure |
|
| >pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315 | Back alignment and structure |
|
| >pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311 | Back alignment and structure |
|
| >pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311 | Back alignment and structure |
|
| >pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335 | Back alignment and structure |
|
| >pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311 | Back alignment and structure |
|
| >pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339 | Back alignment and structure |
|
| >pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302 | Back alignment and structure |
|
| >pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299 | Back alignment and structure |
|
| >pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294 | Back alignment and structure |
|
| >pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311 | Back alignment and structure |
|
| >pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322 | Back alignment and structure |
|
| >pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314 | Back alignment and structure |
|
| >pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342 | Back alignment and structure |
|
| >pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335 | Back alignment and structure |
|
| >pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337 | Back alignment and structure |
|
| >pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336 | Back alignment and structure |
|
| >pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311 | Back alignment and structure |
|
| >pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279 | Back alignment and structure |
|
| >pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292 | Back alignment and structure |
|
| >pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308 | Back alignment and structure |
|
| >pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317 | Back alignment and structure |
|
| >pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319 | Back alignment and structure |
|
| >pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317 | Back alignment and structure |
|
| >pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318 | Back alignment and structure |
|
| >pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319 | Back alignment and structure |
|
| >pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306 | Back alignment and structure |
|
| >pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314 | Back alignment and structure |
|
| >pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307 | Back alignment and structure |
|
| >pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314 | Back alignment and structure |
|
| >pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302 | Back alignment and structure |
|
| >pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309 | Back alignment and structure |
|
| >pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348 | Back alignment and structure |
|
| >pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304 | Back alignment and structure |
|
| >pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312 | Back alignment and structure |
|
| >pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310 | Back alignment and structure |
|
| >pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298 | Back alignment and structure |
|
| >pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272 | Back alignment and structure |
|
| >pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315 | Back alignment and structure |
|
| >pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309 | Back alignment and structure |
|
| >pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373 | Back alignment and structure |
|
| >pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313 | Back alignment and structure |
|
| >pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311 | Back alignment and structure |
|
| >pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325 | Back alignment and structure |
|
| >pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325 | Back alignment and structure |
|
| >pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327 | Back alignment and structure |
|
| >pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327 | Back alignment and structure |
|
| >pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317 | Back alignment and structure |
|
| >pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307 | Back alignment and structure |
|
| >pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285 | Back alignment and structure |
|
| >pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325 | Back alignment and structure |
|
| >pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326 | Back alignment and structure |
|
| >pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285 | Back alignment and structure |
|
| >pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504 | Back alignment and structure |
|
| >pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613 | Back alignment and structure |
|
| >pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290 | Back alignment and structure |
|
| >pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291 | Back alignment and structure |
|
| >pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301 | Back alignment and structure |
|
| >pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350 | Back alignment and structure |
|
| >pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573 | Back alignment and structure |
|
| >pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321 | Back alignment and structure |
|
| >pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466 | Back alignment and structure |
|
| >pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From Par-3 Length = 396 | Back alignment and structure |
|
| >pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib Length = 336 | Back alignment and structure |
|
| >pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285 | Back alignment and structure |
|
| >pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293 | Back alignment and structure |
|
| >pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311 | Back alignment and structure |
|
| >pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain Length = 345 | Back alignment and structure |
|
| >pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor Length = 349 | Back alignment and structure |
|
| >pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332 | Back alignment and structure |
|
| >pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In Complex With Novel Allosteric Inhibitor Length = 304 | Back alignment and structure |
|
| >pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311 | Back alignment and structure |
|
| >pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak) Length = 281 | Back alignment and structure |
|
| >pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491 | Back alignment and structure |
|
| >pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324 | Back alignment and structure |
|
| >pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Inhibitor Length = 326 | Back alignment and structure |
|
| >pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352 | Back alignment and structure |
|
| >pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294 | Back alignment and structure |
|
| >pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I Tgf-Beta Receptor In Complex With Fkbp12 Length = 342 | Back alignment and structure |
|
| >pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Pyrrolo[2,3- D]thiazole Length = 282 | Back alignment and structure |
|
| >pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307 | Back alignment and structure |
|
| >pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335 | Back alignment and structure |
|
| >pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical Protein Kinase C-Iota Length = 364 | Back alignment and structure |
|
| >pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333 | Back alignment and structure |
|
| >pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542 Length = 309 | Back alignment and structure |
|
| >pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315 | Back alignment and structure |
|
| >pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3- Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine Length = 306 | Back alignment and structure |
|
| >pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276 | Back alignment and structure |
|
| >pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative Length = 281 | Back alignment and structure |
|
| >pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C-kit Tyrosine Kinase Length = 313 | Back alignment and structure |
|
| >pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And Kinase Domains Of Focal Adhesion Kinase. Length = 276 | Back alignment and structure |
|
| >pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex Length = 329 | Back alignment and structure |
|
| >pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353 | Back alignment and structure |
|
| >pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382 | Back alignment and structure |
|
| >pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318 | Back alignment and structure |
|
| >pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674 | Back alignment and structure |
|
| >pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human Tgf- Beta Type I Receptor Length = 303 | Back alignment and structure |
|
| >pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C- Kit Tyrosine Kinase Length = 331 | Back alignment and structure |
|
| >pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer Length = 319 | Back alignment and structure |
|
| >pdb|4EUT|A Chain A, Structure Of Bx-795 Complexed With Unphosphorylated Human Tbk1 Kinase- Uld Domain Length = 396 | Back alignment and structure |
|
| >pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A Methanesulfonamide Diaminopyrimidine Inhibitor Length = 276 | Back alignment and structure |
|
| >pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib Length = 336 | Back alignment and structure |
|
| >pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320 | Back alignment and structure |
|
| >pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha (Mrck Alpha) Length = 437 | Back alignment and structure |
|
| >pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp Site Inhibitor Length = 301 | Back alignment and structure |
|
| >pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316 | Back alignment and structure |
|
| >pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315 | Back alignment and structure |
|
| >pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1 Length = 415 | Back alignment and structure |
|
| >pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299 | Back alignment and structure |
|
| >pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326 | Back alignment and structure |
|
| >pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276 | Back alignment and structure |
|
| >pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain Length = 402 | Back alignment and structure |
|
| >pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil Length = 433 | Back alignment and structure |
|
| >pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311 | Back alignment and structure |
|
| >pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311 | Back alignment and structure |
|
| >pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311 | Back alignment and structure |
|
| >pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310 | Back alignment and structure |
|
| >pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase Domain Of The Human Epidermal Growth Factor Receptor 3 (Her3) Length = 325 | Back alignment and structure |
|
| >pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains. Length = 656 | Back alignment and structure |
|
| >pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269 | Back alignment and structure |
|
| >pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371 | Back alignment and structure |
|
| >pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex With Amp-Pnp Length = 344 | Back alignment and structure |
|
| >pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 285 bits (732), Expect = 3e-86
Identities = 93/319 (29%), Positives = 141/319 (44%), Gaps = 10/319 (3%)
Query: 1 NLT-NLRELHLRDNYLTGLIPTETWN--LKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLF 57
NL+ +L L L N +G I +L +L L N F G +P ++ N S L L
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 58 LFENNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPK 116
L N LSG+IP S+G+L L L L N G + + LE +I+ N G IP
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 117 CLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLN 176
L NC NL ISL N + G I + G NL L +S+N+F G I + G C L L+
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544
Query: 177 VSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGN--QLIGHL 234
++ N +IP + S ++ N I GK + GN + G
Sbjct: 545 LNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600
Query: 235 PSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSE 294
++ L+ N+++ + + N + +LD+S +PKE+G + L
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660
Query: 295 LELSHNFLGREIPSQICSM 313
L L HN + IP ++ +
Sbjct: 661 LNLGHNDISGSIPDEVGDL 679
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 284 bits (728), Expect = 9e-86
Identities = 105/320 (32%), Positives = 149/320 (46%), Gaps = 8/320 (2%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+ + L+ L + N L+G L L + NQF G +P L SL+YL L E
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAE 278
Query: 61 NNLSGSIPPSV-GNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPK-C 117
N +G IP + G LT L L NHF G + LE + + N+F G +P
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFG-IYLNLTFLDISDNNFFGEIASNWGKCPK--LST 174
L L + L N G + E+ + +L LD+S NNF G I N + PK L
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398
Query: 175 LNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHL 234
L + N T IP + N S L LS N++ G IP G L+ L L L N L G +
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 235 PSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSE 294
P E+ + LE L L N + IP L N L+++ LS + E+PK +G+L L+
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 295 LELSHNFLGREIPSQICSME 314
L+LS+N IP+++
Sbjct: 519 LKLSNNSFSGNIPAELGDCR 538
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 276 bits (709), Expect = 5e-83
Identities = 97/319 (30%), Positives = 138/319 (43%), Gaps = 9/319 (2%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
NL L + N + IP + +L L + GN+ G ++ + L+ L +
Sbjct: 198 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGPIPKCL 118
N G IPP L L L+L N FTG + + L + + GNHF G +P
Sbjct: 257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 119 RNCPNLVRISLEGNNMRGTI-SEAFGIYLNLTFLDISDNNFFGEIASNWGKC-PKLSTLN 176
+C L ++L NN G + + L LD+S N F GE+ + L TL+
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Query: 177 VSMNNITRSIPLEIGN--LSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHL 234
+S NN + I + +TL E L N GKIP + L L L N L G +
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Query: 235 PSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSE 294
PS +GSL+KL L L N IP+ L + L L L E+P L L+
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 295 LELSHNFLGREIPSQICSM 313
+ LS+N L EIP I +
Sbjct: 495 ISLSNNRLTGEIPKWIGRL 513
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 275 bits (705), Expect = 2e-82
Identities = 95/311 (30%), Positives = 142/311 (45%), Gaps = 7/311 (2%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
N + L LHL NYL+G IP+ +L L L L N G +P + + +L L L
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N+L+G IP + N L ++L NN TG + I R L + + N F G IP L
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
+C +L+ + L N GTI A + I+ N G+ + +
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMF---KQS-GKIAANFIAGKRYVYIKNDGMKKECHGAG 591
Query: 180 N--NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSE 237
N ++ LST N +++ G F S+ L + N L G++P E
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 238 IGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELEL 297
IGS+ L LNL N S IP+ +G+L L+ LDLS + +P+ + L L+E++L
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 298 SHNFLGREIPS 308
S+N L IP
Sbjct: 712 SNNNLSGPIPE 722
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 267 bits (685), Expect = 2e-79
Identities = 93/322 (28%), Positives = 142/322 (44%), Gaps = 14/322 (4%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETW---NLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLF 57
L +L L L N ++G L L + GN+ G + V +L +L
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLD 206
Query: 58 LFENNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPK 116
+ NN S I P +G+ L L + N +G+ I L+ + + N F GPIP
Sbjct: 207 VSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265
Query: 117 CLRNCPNLVRISLEGNNMRGTISEAFGIYL-NLTFLDISDNNFFGEIASNWGKCPKLSTL 175
+L +SL N G I + LT LD+S N+F+G + +G C L +L
Sbjct: 266 L--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323
Query: 176 NVSMNNITRSIPLE-IGNLSTLNEFDLSLNHIVGKIPKEFGKL-NSLTKLILRGNQLIGH 233
+S NN + +P++ + + L DLS N G++P+ L SL L L N G
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383
Query: 234 LPSEIG--SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQ 291
+ + L+ L L N F+ IP +L N +L L LS +P LG L +
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443
Query: 292 LSELELSHNFLGREIPSQICSM 313
L +L+L N L EIP ++ +
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYV 465
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 266 bits (683), Expect = 3e-79
Identities = 87/321 (27%), Positives = 132/321 (41%), Gaps = 11/321 (3%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETW-NLKSLVKLGLGGNQFRGSLPSSVGNLS-SLRYLFL 58
+ + L L L N +G +P +T ++ L L L N+F G LP S+ NLS SL L L
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 59 FENNLSGSIPPSVGNLM---LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIP 115
NN SG I P++ L L L+NN FTG + + L + + N+ G IP
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 116 KCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTL 175
L + L + L N + G I + L L + N+ GEI S C L+ +
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 176 NVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLP 235
++S N +T IP IG L L LS N G IP E G SL L L N G +P
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 236 SEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS--KYQFIQELPKELGKLVQLS 293
+ + + ++ N + + N + +F ++L +L +
Sbjct: 556 AAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611
Query: 294 ELELSHNFLGREIPSQICSME 314
++ G +
Sbjct: 612 PCNITSRVYGGHTSPTFDNNG 632
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 239 bits (612), Expect = 4e-69
Identities = 88/325 (27%), Positives = 135/325 (41%), Gaps = 18/325 (5%)
Query: 1 NLTNLRELHLRDNYLT---GLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLF 57
+ + L L + + +L L L L + GS+ +SL L
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106
Query: 58 LFENNLSGSIPP--SVGNL-MLTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGP 113
L N+LSG + S+G+ L L + +N + + +LE + + N G
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166
Query: 114 IPKCLR---NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCP 170
C L +++ GN + G + +NL FLD+S NNF I G C
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCS 223
Query: 171 KLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL 230
L L++S N ++ I + L ++S N VG IP L SL L L N+
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF 281
Query: 231 IGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKE-LGK 288
G +P + G+ L L+LS N F +P G+ L L LS F ELP + L K
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 289 LVQLSELELSHNFLGREIPSQICSM 313
+ L L+LS N E+P + ++
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNL 366
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 3e-64
Identities = 77/264 (29%), Positives = 114/264 (43%), Gaps = 7/264 (2%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+ L L L N LTG IP+ N +L + L N+ G +P +G L +L L L
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N+ SG+IP +G+ L L L N F G + + + N G ++
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA----ANFIAGKRYVYIK 579
Query: 120 NCPNLVRISLEGN--NMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177
N GN +G SE +I+ + G + + + L++
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 178 SMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSE 237
S N ++ IP EIG++ L +L N I G IP E G L L L L N+L G +P
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 238 IGSLTKLEFLNLSTNRFSSLIPES 261
+ +LT L ++LS N S IPE
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPEM 723
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 6e-58
Identities = 78/298 (26%), Positives = 126/298 (42%), Gaps = 15/298 (5%)
Query: 23 TWNLKSLVKLGLGGNQFR---GSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVL 79
T + + L ++ SS+ +L+ L LFL ++++GS+ + LT L
Sbjct: 46 TCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSL 105
Query: 80 ALENNHFTGNL--RHNICRNGALERVIVGGNHFRGPIPK-CLRNCPNLVRISLEGNNMRG 136
L N +G + ++ L+ + V N P +L + L N++ G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165
Query: 137 TISEAFGIYLN---LTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNL 193
+ + L L IS N G++ + +C L L+VS NN + IP +G+
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDC 222
Query: 194 STLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNR 253
S L D+S N + G + L L + NQ +G +P L L++L+L+ N+
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENK 280
Query: 254 FSSLIPESL-GNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQI 310
F+ IP+ L G L LDLS F +P G L L LS N E+P
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 224 bits (574), Expect = 3e-68
Identities = 77/298 (25%), Positives = 117/298 (39%), Gaps = 32/298 (10%)
Query: 8 LHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGS--LPSSVGNLSSLRYLFLF-ENNLS 64
+ G++ + L L G +PSS+ NL L +L++ NNL
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90
Query: 65 GSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPN 123
G IPP++ L L L + + + + G IP L
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVS------------------------GAIPDFLSQIKT 126
Query: 124 LVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLST-LNVSMNNI 182
LV + N + GT+ + NL + N G I ++G KL T + +S N +
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 183 TRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLT 242
T IP NL+ L DLS N + G FG + K+ L N L L +G
Sbjct: 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK 244
Query: 243 KLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN 300
L L+L NR +P+ L L LH L++S E+P+ G L + ++N
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 2e-65
Identities = 72/276 (26%), Positives = 104/276 (37%), Gaps = 29/276 (10%)
Query: 37 NQFRGSLPSSVGNLSSLRYLFLFENNLSGS--IPPSVGNL-MLTVLALENNHFTGNLRHN 93
+ G L + + L L NL IP S+ NL L L +
Sbjct: 36 RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI--------- 86
Query: 94 ICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDI 153
N+ GPIP + L + + N+ G I + L LD
Sbjct: 87 --------------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 154 SDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEF-DLSLNHIVGKIPK 212
S N G + + P L + N I+ +IP G+ S L +S N + GKIP
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 213 EFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLD 272
F LN L + L N L G GS + ++L+ N + + +G L+ LD
Sbjct: 193 TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLD 250
Query: 273 LSKYQFIQELPKELGKLVQLSELELSHNFLGREIPS 308
L + LP+ L +L L L +S N L EIP
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 6e-62
Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 30/256 (11%)
Query: 1 NLTNLRELHLRD-NYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLF 59
NL L L++ N L G IP L L L + G++P + + +L L
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 60 ENNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCL 118
N LSG++PPS+ +L L + + N + G IP
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRIS------------------------GAIPDSY 169
Query: 119 RNCPNLVR-ISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177
+ L +++ N + G I F LNL F+D+S N G+ + +G +++
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFA-NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 178 SMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSE 237
+ N++ + ++G LN DL N I G +P+ +L L L + N L G +P
Sbjct: 229 AKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Query: 238 IGSLTKLEFLNLSTNR 253
G+L + + + N+
Sbjct: 288 -GNLQRFDVSAYANNK 302
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 192 bits (491), Expect = 3e-56
Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 31/240 (12%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
LT L L++ ++G IP +K+LV L N G+LP S+ +L +L +
Sbjct: 99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158
Query: 61 NNLSGSIPPSVGNL--MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCL 118
N +SG+IP S G+ + T + + N T G IP
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLT------------------------GKIPPTF 194
Query: 119 RNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVS 178
N NL + L N + G S FG N + ++ N+ ++ G L+ L++
Sbjct: 195 ANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLR 252
Query: 179 MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLI--GHLPS 236
N I ++P + L L+ ++S N++ G+IP+ G L N+ + LP+
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPA 311
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 156 bits (398), Expect = 3e-43
Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 25/208 (12%)
Query: 108 NHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWG 167
+ G + + + L G N+ I S+
Sbjct: 36 RTWLGVLCDTDTQTYRVNNLDLSGLNLPKP----------------------YPIPSSLA 73
Query: 168 KCPKLSTLNVS-MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILR 226
P L+ L + +NN+ IP I L+ L+ ++ ++ G IP ++ +L L
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 227 GNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLH-YLDLSKYQFIQELPKE 285
N L G LP I SL L + NR S IP+S G+ KL + +S+ + ++P
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 286 LGKLVQLSELELSHNFLGREIPSQICSM 313
L L+ ++LS N L + S
Sbjct: 194 FANL-NLAFVDLSRNMLEGDASVLFGSD 220
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 206 bits (525), Expect = 5e-58
Identities = 55/326 (16%), Positives = 108/326 (33%), Gaps = 33/326 (10%)
Query: 1 NLTNLRELHLRDNYLTGL-IPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLF 59
++ +++ N L + T +K L L NQ G LP+ G+ L L L
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLA 361
Query: 60 ENNLSGSIPPSVGNLM--LTVLALENNHFTGNLRH-NICRNGALERVIVGGNHFRG---- 112
N ++ IP + + L+ +N + + + N
Sbjct: 362 YNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420
Query: 113 ---PIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNF-------FGEI 162
P+ N+ I+L N + E F L+ +++ N +
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480
Query: 163 ASNWGKCPKLSTLNVSMNNITRSIPLEI--GNLSTLNEFDLSLNHIVGKIPKEFGKLNSL 220
N+ L+++++ N +T + + L L DLS N P + ++L
Sbjct: 481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL 538
Query: 221 TKLILR------GNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
+R GN+ + P I L L + +N + + N + LD+
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN---ISVLDIK 595
Query: 275 KYQFIQELPKELGKLVQLSELELSHN 300
I + ++ L ++
Sbjct: 596 DNPNISIDLSYVCPYIEAGMYMLFYD 621
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 202 bits (517), Expect = 7e-57
Identities = 53/346 (15%), Positives = 106/346 (30%), Gaps = 60/346 (17%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFR--------GSLPSSVGNLSS 52
NL +L ++ + + +PT L + + + N+ +
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306
Query: 53 LRYLFLFENNL-SGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHF 110
++ +++ NNL + + S+ + L +L N G
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG---------------------- 344
Query: 111 RGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNW--GK 168
+ L ++L N + + G + L + N I + +
Sbjct: 345 ---KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKS 400
Query: 169 CPKLSTLNVSMNNIT-------RSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLT 221
+S ++ S N I + ++ +LS N I + F + L+
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460
Query: 222 KLILRGNQL-------IGHLPSEIGSLTKLEFLNLSTNRFSSLIPE-SLGNLLKLHYLDL 273
+ L GN L + + L ++L N+ + L + L L +DL
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520
Query: 274 SKYQFIQELPKELGKLVQLSELELSH------NFLGREIPSQICSM 313
S F + P + L + + N RE P I
Sbjct: 521 SYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 201 bits (514), Expect = 2e-56
Identities = 46/328 (14%), Positives = 101/328 (30%), Gaps = 26/328 (7%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRG----SLPSSVGNLSSLRYL 56
+ + L L +G +P L L L LG + + P + S
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 57 FLFENNLSGSIPPSVGN---LMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGP 113
+ + L + ++ +++ + ++ N+
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF- 197
Query: 114 IPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLS 173
+ K + L + + + N + + W L+
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLKDLT 252
Query: 174 TLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIV--------GKIPKEFGKLNSLTKLIL 225
+ V +P + L + +++ N + + + + + +
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312
Query: 226 RGNQLI-GHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPK 284
N L + + + + KL L N+ +P G+ +KL L+L+ Y I E+P
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLA-YNQITEIPA 370
Query: 285 EL-GKLVQLSELELSHNFLGREIPSQIC 311
G Q+ L +HN L + IP+
Sbjct: 371 NFCGFTEQVENLSFAHNKL-KYIPNIFD 397
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 6e-55
Identities = 58/359 (16%), Positives = 119/359 (33%), Gaps = 73/359 (20%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETW-------------------NLKSLVKLGLGGNQFRG 41
LT LR+ ++ ++ E W NLK L + +
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263
Query: 42 SLPSSVGNLSSLRYLFLFENNL--------SGSIPPSVGNL-MLTVLALENNHFTGNLRH 92
LP+ + L ++ + + N + ++ + N+
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT---- 319
Query: 93 NICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLD 152
P+ L+ L + N + G + AFG + L L+
Sbjct: 320 -------------------FPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLN 359
Query: 153 ISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIP--LEIGNLSTLNEFDLSLNHIVG-- 208
++ N A+ G ++ L+ + N + IP + ++S ++ D S N I
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD 418
Query: 209 -----KIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL------ 257
+ K +++ + L NQ+ + + L +NL N + +
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478
Query: 258 -IPESLGNLLKLHYLDLSKYQFIQELPKEL--GKLVQLSELELSHNFLGREIPSQICSM 313
E+ N L +DL + + +L + L L ++LS+N + P+Q +
Sbjct: 479 DENENFKNTYLLTSIDLR-FNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNS 535
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 1e-45
Identities = 48/288 (16%), Positives = 103/288 (35%), Gaps = 22/288 (7%)
Query: 37 NQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNL-MLTVLALENNHFTGNLR---- 91
+ + S+ + + L L SG +P ++G L L VLAL ++ N R
Sbjct: 67 DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126
Query: 92 HNICRNGALERVIVGGNHFRGPIPKCL--RNCPNLVRISLEGNNMRGTISEAFGIYLNLT 149
I N + E+ H++ + +L++ + + + +I ++ I L T
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186
Query: 150 FLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGK 209
+ NN ++ + KL + + E +
Sbjct: 187 QIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENE-----NSEYAQQYKT 240
Query: 210 IPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL--------IPES 261
++ L LT + + + LP+ + +L +++ +N++ NR S
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300
Query: 262 LGNLLKLHYLDLSKYQFIQ-ELPKELGKLVQLSELELSHNFLGREIPS 308
K+ + + + L K+ +L LE +N L ++P+
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA 348
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 6e-22
Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 7/154 (4%)
Query: 167 GKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVG----KIPKEFGKLNSLTK 222
+++ L++ + +P IG L+ L L + PK S +
Sbjct: 78 NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137
Query: 223 LILRGNQLIGHLPSEIG--SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQ 280
+ L ++++ I +S LK + I
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN-IT 196
Query: 281 ELPKELGKLVQLSELELSHNFLGREIPSQICSME 314
+ K + +L +L + + ++ E + E
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 5e-15
Identities = 22/148 (14%), Positives = 45/148 (30%), Gaps = 6/148 (4%)
Query: 172 LSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLI 231
L + ++N S F+ L+ + +T L L G
Sbjct: 35 LKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGAS 94
Query: 232 GHLPSEIGSLTKLEFLNLSTNRFS----SLIPESLGNLLKLHYLDLSKYQFIQELPKELG 287
G +P IG LT+LE L L ++ P+ + + + + +
Sbjct: 95 GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDP 154
Query: 288 KLV--QLSELELSHNFLGREIPSQICSM 313
+ L + ++ + + I
Sbjct: 155 REDFSDLIKDCINSDPQQKSIKKSSRIT 182
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 7e-57
Identities = 68/335 (20%), Positives = 117/335 (34%), Gaps = 21/335 (6%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L L+ L+L+ N L+ L +L +L L N + + +L L L
Sbjct: 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTGNLRH--NICRNGALERVIVGGNHFRGPIPKC 117
N LS + + L L L L NN +I N +L+++ + N + P C
Sbjct: 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLN---LTFLDISDNNFFGEIASNWG--KCPKL 172
L + L + +++E + L + L +S++ + + K L
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250
Query: 173 STLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIG 232
+ L++S NN+ L L F L N+I L ++ L L+ +
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310
Query: 233 HL---------PSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQF-IQEL 282
+ L LE LN+ N + L+ L YL LS ++ L
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370
Query: 283 PKELGK---LVQLSELELSHNFLGREIPSQICSME 314
E L L L+ N + + +
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 2e-54
Identities = 68/334 (20%), Positives = 109/334 (32%), Gaps = 17/334 (5%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
TN+ L+L N L L L L +G N P L L+ L L N
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 62 NLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
LS + LT L L +N + + L + + N
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLN--LTFLDISDNNFFGEIASNWGKCPKLSTLNVS 178
NL + L N ++ SE I+ N L L++S N + +L L ++
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203
Query: 179 MNNITRSIPLEIG---NLSTLNEFDLSLNHIVGKIPKEFGKLN--SLTKLILRGNQLIGH 233
+ S+ ++ +++ LS + + F L +LT L L N L
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263
Query: 234 LPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQEL---------PK 284
L +LE+ L N L SL L + YL+L + Q +
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323
Query: 285 ELGKLVQLSELELSHNFLGREIPSQICSMECCEV 318
L L L + N + + + +
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 190 bits (486), Expect = 2e-52
Identities = 73/333 (21%), Positives = 115/333 (34%), Gaps = 25/333 (7%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
TNL L L N L + L L L N + S+ L ++RYL L
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305
Query: 61 N---------NLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNH- 109
+ +L S L L L +E+N G + L+ + + +
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365
Query: 110 -FRGPIPKCLRNCPN--LVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN- 165
R + + + L ++L N + S+AF +L LD+ N E+
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
Query: 166 WGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHI--VGKIPKEFGKLNSLTKL 223
W + + +S N + + +L L + V P F L +LT L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485
Query: 224 ILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL--------IPESLGNLLKLHYLDLSK 275
L N + + L KLE L+L N + L L L LH L+L
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545
Query: 276 YQFIQELPKELGKLVQLSELELSHNFLGREIPS 308
F + + L +L ++L N L S
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 3e-52
Identities = 72/336 (21%), Positives = 128/336 (38%), Gaps = 22/336 (6%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVG---NLSSLRYLF 57
++L++L L N + P + L L L Q SL + +S+R L
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228
Query: 58 LFENNLSGSIPPSVGNLM---LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPI 114
L + LS + + L LT+L L N+ + LE + N+ +
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288
Query: 115 PKCLRNCPNLVRISLEGNNMRGTIS---------EAFGIYLNLTFLDISDNNFFGEIASN 165
L N+ ++L+ + + +IS +F L L++ DN+ G ++
Sbjct: 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348
Query: 166 WGKCPKLSTLNVSMNNIT-RSIPLEIG---NLSTLNEFDLSLNHIVGKIPKEFGKLNSLT 221
+ L L++S + + R++ E S L+ +L+ N I F L L
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408
Query: 222 KLILRGNQLIGHLP-SEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS--KYQF 278
L L N++ L E L + + LS N++ L S + L L L +
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468
Query: 279 IQELPKELGKLVQLSELELSHNFLGREIPSQICSME 314
+ P L L+ L+LS+N + + +E
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 6e-52
Identities = 70/326 (21%), Positives = 113/326 (34%), Gaps = 26/326 (7%)
Query: 1 NLTNLRELHLRDNY---------LTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLS 51
L N+R L+L+ ++ L + LK L L + N G + L
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353
Query: 52 SLRYLFLFENNLSGSIPP-----SVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVG 106
+L+YL L + S S+ + L +L L N + G LE + +G
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413
Query: 107 GNHFRGPIP-KCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNF--FGEIA 163
N + + R N+ I L N +F + +L L +
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473
Query: 164 SNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHI--------VGKIPKEFG 215
S + L+ L++S NNI + L L DL N++ G
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533
Query: 216 KLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSK 275
L+ L L L N L +L+ ++L N ++L N + L L+L K
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593
Query: 276 YQFIQELPKELGK-LVQLSELELSHN 300
K G L+EL++ N
Sbjct: 594 NLITSVEKKVFGPAFRNLTELDMRFN 619
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 1e-49
Identities = 65/330 (19%), Positives = 105/330 (31%), Gaps = 11/330 (3%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
+ LT +P + ++ L L NQ R ++ S L L + N
Sbjct: 4 VSHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 63 LSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNC 121
+S P L ML VL L++N + L + + N +
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNF--FGEIASNWGKCPKLSTLNVSM 179
NL+ + L N + T NL L +S+N + L L +S
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFG---KLNSLTKLILRGNQLIGHLPS 236
N I P + L L+ + + ++ S+ L L +QL +
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240
Query: 237 EIGSL--TKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSE 294
L T L L+LS N + + +S L +L Y L L L +
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300
Query: 295 LELSHNFLGREIPSQICSMECCEVFCTITN 324
L L +F + I F +
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKC 330
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 6e-40
Identities = 59/326 (18%), Positives = 103/326 (31%), Gaps = 22/326 (6%)
Query: 1 NLTNLRELHLRDNYLTGLIPTET----WNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYL 56
L NL+ L L +++ + T L L L N+ + L L L
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410
Query: 57 FLFENNLSGSIPPSV-GNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRG-- 112
L N + + L + + L N + R++ +L+R+++ +
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470
Query: 113 PIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNN--------FFGEIAS 164
P + NL + L NN+ + L LD+ NN G
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 530
Query: 165 NWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLI 224
L LN+ N +L L DL LN++ F SL L
Sbjct: 531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590
Query: 225 LRGNQLIGHLPSEIG-SLTKLEFLNLSTNRFSSLIP--ESLGNLLKLHYLDLSK--YQFI 279
L+ N + G + L L++ N F N + + ++ + ++
Sbjct: 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYL 650
Query: 280 QELPKEL-GKLVQLSELELSHNFLGR 304
P G V+L + +
Sbjct: 651 CNTPPHYHGFPVRLFDTSSCKDSAHH 676
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 5e-54
Identities = 74/293 (25%), Positives = 128/293 (43%), Gaps = 52/293 (17%)
Query: 410 KFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFF 469
+F E+ A ++F K +G G G VY+ L +AVK+ Q + +F
Sbjct: 19 RFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEE--RTQ-GGELQFQ 75
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDA------------- 516
E+E ++ HRN+++ GFC +L+Y Y+ GS+A+ L
Sbjct: 76 TEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQR 135
Query: 517 ----AAEEL--------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS-AL 557
+A L D+ + N+LLD E +A V DFG+AK + ++ + A+
Sbjct: 136 IALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAV 195
Query: 558 VGTYRYVAPDYR------KKCDVYSFRVLALEVIKGK------HPRGFVSSILPS---PS 602
GT ++AP+Y +K DV+ + V+ LE+I G+ +L
Sbjct: 196 RGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGL 255
Query: 603 VINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ +L+ ++D L D + + +++VA C SP RP M + + L
Sbjct: 256 LKEKKLEALVDVDLQGNYKDEE--VEQLIQVALLCTQSSPMERPKMSEVVRML 306
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 5e-52
Identities = 86/313 (27%), Positives = 132/313 (42%), Gaps = 55/313 (17%)
Query: 389 REGQRSPQNSQGLLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFL 448
+ + + V++ A N+FD K+ IG G G VY+ L +
Sbjct: 7 KATNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKV 66
Query: 449 AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL 508
A+K+ S Q +EF EIE L+ RH ++V GFC ILIY+Y++ G+L
Sbjct: 67 ALKRRTPE--SSQ--GIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNL 122
Query: 509 ATNLSNDA-----------------AAEEL-----------DISSKNVLLDLEHKAHVSD 540
+L AA L D+ S N+LLD ++D
Sbjct: 123 KRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITD 182
Query: 541 FGIAK-FLKPDSSNWSALV-GTYRYVAPDYRK------KCDVYSFRVLALEVIKGKHPRG 592
FGI+K + D ++ S +V GT Y+ P+Y K DVYSF V+ EV+ +
Sbjct: 183 FGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSA-- 240
Query: 593 FVSSILPS----------PSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSP 642
+ LP S N +L++++DP L + L + A CL +S
Sbjct: 241 -IVQSLPREMVNLAEWAVESHNNGQLEQIVDPNL-ADKIRPES-LRKFGDTAVKCLALSS 297
Query: 643 ESRPTMQTITQQL 655
E RP+M + +L
Sbjct: 298 EDRPSMGDVLWKL 310
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 9e-51
Identities = 57/363 (15%), Positives = 110/363 (30%), Gaps = 53/363 (14%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETW-------------------NLKSLVKLGLGGNQFRG 41
LT L+ ++ ++ T W NLK L + L
Sbjct: 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505
Query: 42 SLPSSVGNLSSLRYLFLFENNLSG---------SIPPSVGNL-MLTVLALENNHFTG-NL 90
LP + +L L+ L + N + + + + N+
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565
Query: 91 RHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTF 150
++ + L + N R + L + L+ N + + +
Sbjct: 566 SASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEG 623
Query: 151 LDISDNNFFG-EIASNWGKCPKLSTLNVSMNNITR-----SIPLEIGNLSTLNEFDLSLN 204
L S N N + +++ S N I S ++ + LS N
Sbjct: 624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683
Query: 205 HIVGKIPKEFGKLNSLTKLILRGNQL-------IGHLPSEIGSLTKLEFLNLSTNRFSSL 257
I + F + ++ +IL N + + + L ++L N+ +SL
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743
Query: 258 IPE-SLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH------NFLGREIPSQI 310
+ L L +D+S F P + QL + H N + R+ P+ I
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802
Query: 311 CSM 313
+
Sbjct: 803 TTC 805
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 3e-49
Identities = 53/324 (16%), Positives = 106/324 (32%), Gaps = 32/324 (9%)
Query: 1 NLTNLRELHLRDNYLTGLIPTET-WNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLF 59
++ ++ N L + + + L L N+ R + G L L L
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLD 603
Query: 60 ENNLSGSIPPSVGNLM--LTVLALENNHFTGNLRH-NICRNGALERVIVGGNHFRG---- 112
N + IP + L +N N + V N
Sbjct: 604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662
Query: 113 -PIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNF-------FGEIAS 164
N ++L N ++ +E F ++ + +S+N
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722
Query: 165 NWGKCPKLSTLNVSMNNITRSIPLEI--GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTK 222
N+ L+T+++ N +T S+ + L L+ D+S N P + + L
Sbjct: 723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKA 780
Query: 223 LILR------GNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKY 276
+R GN+++ P+ I + L L + +N + E L +L+ LD++
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADN 837
Query: 277 QFIQELPKELGKLVQLSELELSHN 300
I + ++ L ++
Sbjct: 838 PNISIDVTSVCPYIEAGMYVLLYD 861
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 9e-47
Identities = 51/354 (14%), Positives = 105/354 (29%), Gaps = 46/354 (12%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
N + L L G +P L L L G + S + +
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380
Query: 61 NNLSGSIPPSVGNLM--LTVLALENNHFTGN-----LRHNICRNGALERVIVGGNHFRGP 113
+ + + L + L + N ++ + + ++ N
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF- 439
Query: 114 IPKCLRNCPNLVRISLEGNNMRGTISEAFGIYL-------------------NLTFLDIS 154
I K ++ L I + +LT +++
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499
Query: 155 DNNFFGEIASNWGKCPKLSTLNVSMNNIT---------RSIPLEIGNLSTLNEFDLSLNH 205
+ ++ P+L +LN++ N + + + F + N+
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559
Query: 206 IVGKIPKE--FGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLG 263
+ P K+ L L N++ G+ KL L L N+ IPE
Sbjct: 560 LEE-FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFC 615
Query: 264 NLLK-LHYLDLSKYQFIQELPK--ELGKLVQLSELELSHNFLGREIPSQICSME 314
+ L S + ++ +P + + ++ S+N +G E + CSM+
Sbjct: 616 AFTDQVEGLGFS-HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 7e-43
Identities = 54/362 (14%), Positives = 105/362 (29%), Gaps = 59/362 (16%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPS-SVGNLSSLRYLFLF 59
LT L+ L + T + ++ R + L L
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404
Query: 60 EN----------------------------NLSGSIPPSVGNL-MLTVLALENNHFTGNL 90
++ N I ++ L L ++ N+ FT
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY-- 462
Query: 91 RHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTF 150
E N +L + L + + L
Sbjct: 463 ---DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519
Query: 151 LDISDNNF---------FGEIASNWGKCPKLSTLNVSMNNITRSIPLE--IGNLSTLNEF 199
L+I+ N + +A + PK+ + NN+ P + + L
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLL 578
Query: 200 DLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS-LTKLEFLNLSTNRFSSLI 258
D N + + + FG LT L L NQ+ +P + + ++E L S N+ +
Sbjct: 579 DCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIP 635
Query: 259 PE-SLGNLLKLHYLDLSKYQFIQELPKELG------KLVQLSELELSHNFLGREIPSQIC 311
+ ++ + +D S Y I + + K + S + LS+N + +
Sbjct: 636 NIFNAKSVYVMGSVDFS-YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694
Query: 312 SM 313
+
Sbjct: 695 TG 696
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 155 bits (392), Expect = 2e-39
Identities = 52/323 (16%), Positives = 101/323 (31%), Gaps = 30/323 (9%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
+ + + I + WN + + + + N + L L
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNFNKEL------DMWGDQPGVDLDNNGRVTGLSLAGFG 334
Query: 63 LSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKC-LRN 120
G +P ++G L L VL+ + T + R + + R K L
Sbjct: 335 AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY 394
Query: 121 CPNLVRISLEGNNMRG---TISEAFGIYLNLTFLDISD-NNFFGEIASNWGKCPKLSTLN 176
L L + + ++L I + N I+ + KL +
Sbjct: 395 DQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIY 454
Query: 177 VSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPS 236
+ + T + + + L LT + L + LP
Sbjct: 455 FANSPFTYDNIAVD-----WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509
Query: 237 EIGSLTKLEFLNLSTNRFSSL---------IPESLGNLLKLHYLDLSKYQFIQELPKE-- 285
+ L +L+ LN++ NR S + + K+ + Y ++E P
Sbjct: 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG-YNNLEEFPASAS 568
Query: 286 LGKLVQLSELELSHNFLGREIPS 308
L K+V+L L+ HN + R + +
Sbjct: 569 LQKMVKLGLLDCVHNKV-RHLEA 590
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 7e-26
Identities = 32/203 (15%), Positives = 65/203 (32%), Gaps = 14/203 (6%)
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177
L N + +SL G +G + +A G L L ++ +
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378
Query: 178 SMNNITRSIP-LEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL------ 230
+ I + + LN DL + I E + +++ L+ Q+
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNR 436
Query: 231 IGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLV 290
I + I LTKL+ + + + F+ Y + L
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE-----NEELSWSNLK 491
Query: 291 QLSELELSHNFLGREIPSQICSM 313
L+++EL + ++P + +
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDL 514
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 8/86 (9%), Positives = 26/86 (30%)
Query: 228 NQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELG 287
+ ++ + ++ L+L+ +P+++G L +L L +
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 288 KLVQLSELELSHNFLGREIPSQICSM 313
+ + E + +
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDY 394
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 170 bits (434), Expect = 4e-48
Identities = 51/316 (16%), Positives = 89/316 (28%), Gaps = 48/316 (15%)
Query: 1 NLTNLRELHLRDNYLTGLIPT-ETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLF 59
N N + L E V L L P LS L+++ +
Sbjct: 54 NSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTID 112
Query: 60 ENNLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCL 118
L +P ++ L L L N +P +
Sbjct: 113 AAGLM-ELPDTMQQFAGLETLTLARNPLRA-------------------------LPASI 146
Query: 119 RNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVS 178
+ L +S+ + E L +L +
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEH---------------QGLVNLQSLRLE 191
Query: 179 MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI 238
I S+P I NL L + + + + L L +L LRG + + P
Sbjct: 192 WTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIF 249
Query: 239 GSLTKLEFLNLS-TNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELEL 297
G L+ L L + +L P + L +L LDL + LP + +L + +
Sbjct: 250 GGRAPLKRLILKDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308
Query: 298 SHNFLGREIPSQICSM 313
+ + + +
Sbjct: 309 PPHLQAQLDQHRPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 1e-31
Identities = 39/300 (13%), Positives = 70/300 (23%), Gaps = 64/300 (21%)
Query: 25 NLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENN 84
+ L G+ + + + S +
Sbjct: 10 HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN---NPQIETRTGR 66
Query: 85 HFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGI 144
L +
Sbjct: 67 ALKA-------------------------TADLLEDATQP-------------------- 81
Query: 145 YLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLN 204
L++ + + L + + + +P + + L L+ N
Sbjct: 82 --GRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN 137
Query: 205 HIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS---------LTKLEFLNLSTNRFS 255
+ +P LN L +L +R + LP + S L L+ L L
Sbjct: 138 PLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196
Query: 256 SLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMEC 315
SL P S+ NL L L + + L + L +L EL+L R P
Sbjct: 197 SL-PASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 6e-25
Identities = 24/180 (13%), Positives = 51/180 (28%), Gaps = 10/180 (5%)
Query: 147 NLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHI 206
L + + + + + N + + +
Sbjct: 13 GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRAL 68
Query: 207 VGKIPKEFGKLNS--LTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGN 264
L LR L P + L+ L+ + + L P+++
Sbjct: 69 K-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQ 125
Query: 265 LLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEVFCTITN 324
L L L++ ++ LP + L +L EL + E+P + S + + N
Sbjct: 126 FAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 13/106 (12%), Positives = 26/106 (24%), Gaps = 22/106 (20%)
Query: 231 IGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQF------------ 278
+G + E L + + L + + D +++
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60
Query: 279 -------IQELPKELGKLVQ--LSELELSHNFLGREIPSQICSMEC 315
++ L Q LEL L + P Q +
Sbjct: 61 ETRTGRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSH 105
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 2e-47
Identities = 62/350 (17%), Positives = 107/350 (30%), Gaps = 41/350 (11%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+ L+ L L + + +L L L L GN + + LSSL+ L E
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGPIPKCL 118
NL+ +G+L L L + +N N LE + + N + L
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Query: 119 RNCPNL----VRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNW-GKCPKLS 173
R + + + L N M AF + L L + +N + L
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228
Query: 174 TLNVSMN------NITRSIPLEIGNLSTLNEFDLSLNHI---VGKIPKEFGKLNSLTKLI 224
+ + N+ + + L L + L ++ + I F L +++
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288
Query: 225 LRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLL------------------ 266
L + + L L +F L +L
Sbjct: 289 LVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346
Query: 267 -KLHYLDLS--KYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSM 313
L +LDLS F + L L+LS N + + S +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGL 395
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 2e-47
Identities = 63/327 (19%), Positives = 112/327 (34%), Gaps = 20/327 (6%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWN---LKSLVKLGLGGNQ------FRGSLPSSVGNLS 51
L L L E ++ L+ L L + + + + L+
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282
Query: 52 SLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFR 111
++ L + + N L L N F + L +
Sbjct: 283 NVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF-----TSNK 336
Query: 112 GPIPKCLRNCPNLVRISLEGNNM--RGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKC 169
G + P+L + L N + +G S++ +L +LD+S N ++SN+
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL 395
Query: 170 PKLSTLNVSMNNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGN 228
+L L+ +N+ + + +L L D+S H F L+SL L + GN
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 229 QLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELG 287
+ +I L L FL+LS + L P + +L L L++S F
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515
Query: 288 KLVQLSELELSHNFLGREIPSQICSME 314
L L L+ S N + ++
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFP 542
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 170 bits (434), Expect = 1e-45
Identities = 68/308 (22%), Positives = 104/308 (33%), Gaps = 15/308 (4%)
Query: 1 NLTNLRELHLRDNYL---TGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLF 57
L NL R YL I L ++ L S ++L
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLE 310
Query: 58 LFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNH--FRGPIP 115
L + +L L G + +LE + + N F+G
Sbjct: 311 LVNCKFGQFPTLKLKSL----KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366
Query: 116 KCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEI-ASNWGKCPKLST 174
+ +L + L N + T+S F L LD +N S + L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Query: 175 LNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKE-FGKLNSLTKLILRGNQLIGH 233
L++S + + LS+L ++ N + F +L +LT L L QL
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 234 LPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLV-QL 292
P+ SL+ L+ LN+S N F SL L L LD S + +EL L
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545
Query: 293 SELELSHN 300
+ L L+ N
Sbjct: 546 AFLNLTQN 553
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 7e-42
Identities = 56/313 (17%), Positives = 100/313 (31%), Gaps = 17/313 (5%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
+ + L L N L L ++ L L L + + + +LS L L L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 63 LSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRG-PIPKCLRN 120
+ + L L L + I L+ + V N + +P+ N
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDIS---DNNFFGEIASNWGKCPKLSTLNV 177
NL + L N ++ + + L++S N I K +L L +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207
Query: 178 SMNNITRSIP-LEIGNLSTLNEFDLSLNHIVGKIPKE---FGKLNSLTKLILRGNQL--- 230
N + ++ I L+ L L L + E L L L + +L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
Query: 231 ---IGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELG 287
+ + LT + +L + + S +L+L +F Q +L
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKLK 325
Query: 288 KLVQLSELELSHN 300
L +L+
Sbjct: 326 SLKRLTFTSNKGG 338
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 3e-34
Identities = 56/258 (21%), Positives = 97/258 (37%), Gaps = 10/258 (3%)
Query: 1 NLTNLRELHLRDNYLT--GLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFL 58
+L +L L L N L+ G + SL L L N + S+ L L +L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403
Query: 59 FENNLSGSIPPSVGNLM--LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPK 116
+NL SV + L L + + H +LE + + GN F+
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 117 C-LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTL 175
NL + L + AF +L L++S NNFF + L L
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523
Query: 176 NVSMNNITRSIPLEIGNL-STLNEFDLSLNHIVGKIPKE--FGKLNSLTKLILRGNQLIG 232
+ S+N+I S E+ + S+L +L+ N + + +L++ ++
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMEC 583
Query: 233 HLPSEIGSLTKLEFLNLS 250
PS+ + + LN++
Sbjct: 584 ATPSDKQGM-PVLSLNIT 600
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 2e-32
Identities = 51/197 (25%), Positives = 77/197 (39%), Gaps = 9/197 (4%)
Query: 117 CLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLN 176
C+ PN+ N + + LD+S N + ++ P+L L+
Sbjct: 3 CVEVVPNIT-YQCMELNFYKIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLD 58
Query: 177 VSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPS 236
+S I +LS L+ L+ N I F L+SL KL+ L
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 237 EIGSLTKLEFLNLSTNRFSSL-IPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLS-- 293
IG L L+ LN++ N S +PE NL L +LDLS + +L L Q+
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 294 --ELELSHNFLGREIPS 308
L+LS N + P
Sbjct: 179 NLSLDLSLNPMNFIQPG 195
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-15
Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 6/114 (5%)
Query: 200 DLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIP 259
+L+ I +P S L L N L S +L+ L+LS ++
Sbjct: 16 ELNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Query: 260 ESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSM 313
+ +L L L L+ L L +L L I +
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 5e-47
Identities = 70/340 (20%), Positives = 120/340 (35%), Gaps = 34/340 (10%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+ L L L N L + T K+L L + N +L L+L
Sbjct: 79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTG-----------------NLRHN--------I 94
N++S P L VL +NN NL N
Sbjct: 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198
Query: 95 CRNGALERVIVGGNHFRGPIPKCLRNC--PNLVRISLEGNNMRGTISEAFGI--YLNLTF 150
+ + + GG I K L+N +L + E + F +++
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258
Query: 151 LDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKI 210
+++ + FF ++ + L L+++ +++ +P + LSTL + LS N
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317
Query: 211 PKEFGKLNSLTKLILRGNQLIGHLPSE-IGSLTKLEFLNLSTNR--FSSLIPESLGNLLK 267
SLT L ++GN L + + +L L L+LS + S L NL
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377
Query: 268 LHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIP 307
L L+LS + + + + QL L+L+ L +
Sbjct: 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 2e-46
Identities = 60/309 (19%), Positives = 100/309 (32%), Gaps = 8/309 (2%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L NL L L + + + L L L N +++ +L++LF +
Sbjct: 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
+S + N L L L +NH + L+ + N + +
Sbjct: 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174
Query: 120 NCPNLVRISLE-GNNMRGTISEAFGIYLNLTFLDISDNNFFGEI--ASNWGKCPKLSTLN 176
+ +SL N I L+ I L
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234
Query: 177 VSMNNITRSIPLEIGNLSTLN--EFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHL 234
+ P L ++ +L ++ F + L +L L + L
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSEL 293
Query: 235 PSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKE-LGKLVQLS 293
PS + L+ L+ L LS N+F +L S N L +L + EL L L L
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353
Query: 294 ELELSHNFL 302
EL+LSH+ +
Sbjct: 354 ELDLSHDDI 362
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 5e-46
Identities = 72/307 (23%), Positives = 114/307 (37%), Gaps = 10/307 (3%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
++ ++L+ +Y + L +L L LPS + LS+L+ L L N
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSAN 311
Query: 62 NLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFR--GPIPKC 117
S N LT L+++ N L N L + + +
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIA-SNWGKCPKLSTLN 176
LRN +L ++L N +EAF L LD++ + A S + L LN
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431
Query: 177 VSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKE---FGKLNSLTKLILRGNQLIGH 233
+S + + S L L +L NH ++ L L L+L L
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491
Query: 234 LPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLS 293
SL + ++LS NR +S E+L +L + YL+L+ LP L L Q
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR 550
Query: 294 ELELSHN 300
+ L N
Sbjct: 551 TINLRQN 557
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 8e-44
Identities = 59/345 (17%), Positives = 103/345 (29%), Gaps = 37/345 (10%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFL-F 59
N L L+L N+++ + + + + L L N + +L L L
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186
Query: 60 ENNLSGSIPPSVGNLM-LTVLALENNHFT-----------------GNLRHN-------- 93
N I P + L G
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246
Query: 94 ---ICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTF 150
++E + + ++F L + L ++ + L
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKK 305
Query: 151 LDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLE-IGNLSTLNEFDLSLNHI--V 207
L +S N F + P L+ L++ N + + NL L E DLS + I
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365
Query: 208 GKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPES-LGNLL 266
+ L+ L L L N+ + +LE L+L+ R +S NL
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425
Query: 267 KLHYLDLSKYQFIQELPKE-LGKLVQLSELELSHNFLGREIPSQI 310
L L+LS + + ++ L L L L N + +
Sbjct: 426 LLKVLNLS-HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 1e-43
Identities = 69/323 (21%), Positives = 127/323 (39%), Gaps = 12/323 (3%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLK--SLVKLGLGGNQFRGSLPSSVGNLSSLRYLFL 58
+ +L D + P L S+ + L + F ++ S L+ L L
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285
Query: 59 FENNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPI-PK 116
+LS +P + L L L L N F + + +L + + GN R +
Sbjct: 286 TATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344
Query: 117 CLRNCPNLVRISLEGNNMR--GTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLST 174
CL N NL + L +++ + +L L++S N + +CP+L
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404
Query: 175 LNVSMNNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL--- 230
L+++ + NL L +LS + + + F L +L L L+GN
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464
Query: 231 IGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLV 290
+ + +L +LE L LS SS+ + +L ++++DLS + + L L
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524
Query: 291 QLSELELSHNFLGREIPSQICSM 313
+ L L+ N + +PS + +
Sbjct: 525 GI-YLNLASNHISIILPSLLPIL 546
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 2e-42
Identities = 54/314 (17%), Positives = 90/314 (28%), Gaps = 7/314 (2%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
+ L N L + T L +L L L Q + + L L L N
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91
Query: 62 NLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
L ++ L L + + LE + +G NH
Sbjct: 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDIS-DNNFFGEIASNWGKCPKLSTLNVSM 179
L + + N + E T L ++ + N I +LN
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211
Query: 180 NNITRSIPLEIGN--LSTLNEFDLSLNHIVGKIPKEFGKL--NSLTKLILRGNQLIGHLP 235
I + N + +L P F L S+ + L+ +
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271
Query: 236 SEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSEL 295
+ + L+ L+L+ S +P L L L L LS +F L+ L
Sbjct: 272 NTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330
Query: 296 ELSHNFLGREIPSQ 309
+ N E+ +
Sbjct: 331 SIKGNTKRLELGTG 344
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 5e-42
Identities = 64/320 (20%), Positives = 105/320 (32%), Gaps = 13/320 (4%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWN--LKSLVKLGLGGNQFRGSLPSSVGNLS--SLRYL 56
+ + L+ +I N ++SL P+ L S+ +
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259
Query: 57 FLFENNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIP 115
L ++ + L L L H + L + L+++++ N F
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ 318
Query: 116 KCLRNCPNLVRISLEGNNMRGTI-SEAFGIYLNLTFLDISDNN--FFGEIASNWGKCPKL 172
N P+L +S++GN R + + NL LD+S ++ L
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378
Query: 173 STLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKE-FGKLNSLTKLILRGNQLI 231
+LN+S N L DL+ + K + F L+ L L L + L
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438
Query: 232 GHLPSEIGSLTKLEFLNLSTNRFSSLI---PESLGNLLKLHYLDLSKYQFIQELPKELGK 288
L L+ LNL N F SL L +L L LS
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498
Query: 289 LVQLSELELSHNFLGREIPS 308
L ++ ++LSHN L
Sbjct: 499 LKMMNHVDLSHNRLTSSSIE 518
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 1e-29
Identities = 38/265 (14%), Positives = 67/265 (25%), Gaps = 7/265 (2%)
Query: 54 RYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGP 113
+ L+ IP ++ N L N R L + +
Sbjct: 15 KTYNCENLGLN-EIPGTLPNS-TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72
Query: 114 IPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLS 173
++ L + L N + A L L L
Sbjct: 73 HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132
Query: 174 TLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL-IG 232
+L + N+I+ + L D N I ++ L T L L N I
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192
Query: 233 HLPSEIGSLTKLEFLNLSTNRFSSLIPESLGN--LLKLHYLDLSKYQFIQELPKELGKLV 290
+ + LN + +I + L N + L P L
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252
Query: 291 QLS--ELELSHNFLGREIPSQICSM 313
++S + L ++ +
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCF 277
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 2e-29
Identities = 52/282 (18%), Positives = 100/282 (35%), Gaps = 13/282 (4%)
Query: 1 NLTNLRELHLRDNYLTGLIPTET-WNLKSLVKLGLGGNQFRGS--LPSSVGNLSSLRYLF 57
N +L L ++ N + T NL++L +L L + S + NLS L+ L
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382
Query: 58 LFENNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGPIP 115
L N + L +L L + +N L+ + + +
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442
Query: 116 KCLRNCPNLVRISLEGNNMRGTI---SEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKL 172
+ P L ++L+GN+ + + L L +S + + +
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502
Query: 173 STLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIG 232
+ +++S N +T S + +L + +L+ NHI +P L+ + LR N L
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
Query: 233 HLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
++ LE+ + + N L + LS
Sbjct: 562 ----TCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLS 599
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 8e-47
Identities = 64/309 (20%), Positives = 107/309 (34%), Gaps = 73/309 (23%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFA 470
+ GR G V++A+L ++ +AVK F Q +
Sbjct: 14 LGTENLYFQSMPLQLLEVKARGRFGCVWKAQLLNEY-VAVKIF-----PIQDKQSWQNEY 67
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHS----ILIYEYLKRGSLATNLSN------------ 514
E+ +L ++H NI++F G LI + ++GSL+ L
Sbjct: 68 EVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELCHIA 127
Query: 515 -DAAA------EEL--------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553
A E++ DI SKNVLL A ++DFG+A + S
Sbjct: 128 ETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSA 187
Query: 554 WS--ALVGTYRYVAP-----------DYRKKCDVYSFRVLALEVIKGKHPRG-------- 592
VGT RY+AP D + D+Y+ ++ E+
Sbjct: 188 GDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYML 247
Query: 593 -FVSSILPSPSVINMR---LDEMLDPRLPP--PSPDVQGKLISIMEVAFSCLDVSPESRP 646
F I PS+ +M+ + + P L L +E C D E+R
Sbjct: 248 PFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIE---ECWDHDAEARL 304
Query: 647 TMQTITQQL 655
+ + +++
Sbjct: 305 SAGCVGERI 313
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 9e-45
Identities = 73/295 (24%), Positives = 119/295 (40%), Gaps = 58/295 (19%)
Query: 411 FDYVEIIRAINDFDAKYC------IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIAD 464
F + E+ N+FD + +G G G VY+ + + +AVKK + +
Sbjct: 15 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTT-VAVKKLAAMVDITTEEL 73
Query: 465 QKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--- 521
+++F EI+ + K +H N+V+ GF S L+Y Y+ GSL LS L
Sbjct: 74 KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWH 133
Query: 522 ------------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW--- 554
DI S N+LLD A +SDFG+A+ +
Sbjct: 134 MRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLAR-ASEKFAQTVMT 192
Query: 555 SALVGTYRYVAPDY-----RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVI----- 604
S +VGT Y+AP+ K D+YSF V+ LE+I G V ++
Sbjct: 193 SRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPA---VDEHREPQLLLDIKEE 249
Query: 605 ----NMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+++ +D ++ + ++ VA CL RP ++ + Q L
Sbjct: 250 IEDEEKTIEDYIDKKMNDADST---SVEAMYSVASQCLHEKKNKRPDIKKVQQLL 301
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 1e-42
Identities = 51/298 (17%), Positives = 97/298 (32%), Gaps = 15/298 (5%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
N + + D+ L + + + ++ +L L GN + + + L L L
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N L L L L NN+ + ++E + N+ +
Sbjct: 68 NVLY-ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VS--CSR 118
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFG-EIASNWGKCPKLSTLNVSM 179
I L N + G + +LD+ N A L LN+
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
N I + ++ + L DLS N + + EF +T + LR N+L+ + +
Sbjct: 179 NFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234
Query: 240 SLTKLEFLNLSTNRFSSL-IPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELE 296
LE +L N F + + ++ + + + +E + L
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-31
Identities = 44/262 (16%), Positives = 99/262 (37%), Gaps = 18/262 (6%)
Query: 42 SLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLM--LTVLALENNHFTGNLRHNICRNGA 99
++ N + + + +++L S+ + L L N + ++
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59
Query: 100 LERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFF 159
LE + + N + L + L + L N + + + ++ L ++NN
Sbjct: 60 LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN-I 111
Query: 160 GEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVG-KIPKEFGKLN 218
++ + G + ++ N IT L+ G S + DL LN I + +
Sbjct: 112 SRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169
Query: 219 SLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQF 278
+L L L+ N + + ++ KL+ L+LS+N+ + + + + ++ L +
Sbjct: 170 TLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNK- 225
Query: 279 IQELPKELGKLVQLSELELSHN 300
+ + K L L +L N
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGN 247
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 4e-22
Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 32/197 (16%)
Query: 138 ISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLN 197
I E ++D++ +AS + L++S N +++ ++ + L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 198 EFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFS-- 255
+LS N + + L++L L L N + E+ +E L+ + N S
Sbjct: 62 LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRV 114
Query: 256 -------------------SLIPESLGNLLKLHYLDLSKYQFIQELPKE--LGKLVQLSE 294
L G ++ YLDL + I + L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEH 173
Query: 295 LELSHNFLGREIPSQIC 311
L L +NF+ ++ Q+
Sbjct: 174 LNLQYNFI-YDVKGQVV 189
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 8/126 (6%)
Query: 185 SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKL 244
+I N + ++ + + + ++ +L L GN L +++ TKL
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 245 EFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGR 304
E LNLS+N + L +L L LDL+ +EL + L ++N +
Sbjct: 61 ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-S 112
Query: 305 EIPSQI 310
+
Sbjct: 113 RVSCSR 118
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 9e-41
Identities = 66/347 (19%), Positives = 108/347 (31%), Gaps = 42/347 (12%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLK----SLVKLGLGGNQFRGSLPSSVGNLSSLRYL 56
NLTNL + L NY+ + + L+ + L + N + L L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHEL 209
Query: 57 FLFENNLSGSIPPSVGNLM--LTVLALENNHFTGNLRHNICRNGALERVIV--------G 106
L N S +I + + L V L F I +E +
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269
Query: 107 GNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYL-------------------N 147
+ N+ +SL G +++
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF 329
Query: 148 LTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIP--LEIGNLSTLNEFDLSLNH 205
L L ++ N G I+ P LS L++S N ++ S ++L DLS N
Sbjct: 330 LKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387
Query: 206 IVGKIPKEFGKLNSLTKLILRGNQLIGHLP-SEIGSLTKLEFLNLSTNRFSSLIPESLGN 264
+ + F L L L + + L S SL KL +L++S
Sbjct: 388 AII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446
Query: 265 LLKLHYLDLSKYQFIQELPKE-LGKLVQLSELELSHNFLGREIPSQI 310
L L+ L ++ F L+ L+LS L +I +
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL-EQISWGV 492
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 9e-39
Identities = 53/314 (16%), Positives = 103/314 (32%), Gaps = 19/314 (6%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLG--------LGGNQFRGSLPSSVGNLSS 52
NL L L E + + L L L++
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286
Query: 53 LRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRG 112
+ + L ++ + + L++ ++ L+ + + N
Sbjct: 287 VSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF---LKSLTLTMNKGSI 342
Query: 113 PIPKCLRNCPNLVRISLEGNNMRGTISEAFGI--YLNLTFLDISDNNFFGEIASNWGKCP 170
P+L + L N + + ++ +L LD+S N +++N+
Sbjct: 343 SFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLE 399
Query: 171 KLSTLNVSMNNITRSIPLE-IGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQ 229
+L L+ + + R +L L D+S + F L SL L + GN
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459
Query: 230 LIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGK 288
+ S + + T L FL+LS + + L +L L++S + +
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519
Query: 289 LVQLSELELSHNFL 302
L LS L+ S N +
Sbjct: 520 LYSLSTLDCSFNRI 533
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 4e-37
Identities = 61/327 (18%), Positives = 111/327 (33%), Gaps = 26/327 (7%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRG-SLPSSVGNLSSLRYLFLF 59
LT+L L + L L L +L KL + N LP+ NL++L ++ L
Sbjct: 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161
Query: 60 ENNLSGSIPPSVGNL-----MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPI 114
N + + L + L + N ++ + L + + GN I
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNI 220
Query: 115 PK-CLRNCPNLVRISLEGNNMRGTISEAFG--------IYLNLTFLDISDNNFFGEIASN 165
K CL+N L L + + + + ++ N F +
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280
Query: 166 WGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLIL 225
+ +S ++++ +I ++ + + + P L L L L
Sbjct: 281 FHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQL-KQFP--TLDLPFLKSLTL 335
Query: 226 RGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNL--LKLHYLDLSKYQFIQELP 283
N+ + + +L L +L+LS N S S +L L +LDLS +
Sbjct: 336 TMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS 392
Query: 284 KELGKLVQLSELELSHNFLGREIPSQI 310
L +L L+ H+ L R
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSA 419
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 1e-36
Identities = 59/312 (18%), Positives = 98/312 (31%), Gaps = 19/312 (6%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
++ + + L N L L N L L L + + L L L L N
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 63 LSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRG-PIPKCLRN 120
+ P S L L L I + L+++ V N +P N
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDIS---DNNFFGEIASNWGKCPKLSTLNV 177
NLV + L N ++ +++S N I + KL L +
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211
Query: 178 SMNNITRSIP-LEIGNLSTLNEFDLSLNHIVGKI------PKEFGKLNSLTKLILR--GN 228
N + +I + NL+ L+ L L + P L +T R
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271
Query: 229 QLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGK 288
+ L + ++L+ L E + K L + + Q +++ P
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQ-LKQFPT--LD 326
Query: 289 LVQLSELELSHN 300
L L L L+ N
Sbjct: 327 LPFLKSLTLTMN 338
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 5e-36
Identities = 54/278 (19%), Positives = 95/278 (34%), Gaps = 11/278 (3%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L N+ + L + L + L + Q + P+ +L L+ L L
Sbjct: 283 CLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLK-QFPTL--DLPFLKSLTLTM 337
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFT--GNLRHNICRNGALERVIVGGNHFRGPIPKCL 118
N S V L+ L L N + G ++ +L + + N +
Sbjct: 338 NKGS-ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANF 395
Query: 119 RNCPNLVRISLEGNNMRGTIS-EAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177
L + + + ++ AF L +LDIS N + + L+TL +
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455
Query: 178 SMNNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPS 236
+ N+ + + N + L DLS + F L+ L L + N L+ S
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515
Query: 237 EIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
L L L+ S NR + L + +L+
Sbjct: 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 7e-35
Identities = 67/327 (20%), Positives = 110/327 (33%), Gaps = 22/327 (6%)
Query: 1 NLTNLRELHLRDNYLTGLIPTET-WNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLF-- 57
L EL LR N+ + I NL L L +F+ + S + L
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261
Query: 58 ------LFENNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHF 110
L N L ++ ++L ++ ++ + + +
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQL 319
Query: 111 RGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDN--NFFGEIASNWGK 168
+ P + P L ++L N +G+IS +L++LD+S N +F G + +
Sbjct: 320 KQ-FPT--LDLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374
Query: 169 CPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKE-FGKLNSLTKLILRG 227
L L++S N + L L D + + F L L L +
Sbjct: 375 TNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433
Query: 228 NQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPES-LGNLLKLHYLDLSKYQFIQELPKEL 286
LT L L ++ N F + N L +LDLSK Q Q
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493
Query: 287 GKLVQLSELELSHNFLGREIPSQICSM 313
L +L L +SHN L S +
Sbjct: 494 DTLHRLQLLNMSHNNLLFLDSSHYNQL 520
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 3e-29
Identities = 48/277 (17%), Positives = 92/277 (33%), Gaps = 10/277 (3%)
Query: 65 GSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNL 124
GS+ P + + + + + +I + + + + N + N L
Sbjct: 2 GSLNPCIEVVPNITYQCMDQKLS-KVPDDIPSS--TKNIDLSFNPLKILKSYSFSNFSEL 58
Query: 125 VRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITR 184
+ L + +A+ +L+ L ++ N ++ L L +
Sbjct: 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118
Query: 185 SIPLEIGNLSTLNEFDLSLNHIVG-KIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTK 243
IG L TL + +++ N I K+P F L +L + L N + +++ L +
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178
Query: 244 LEF----LNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGK-LVQLSELELS 298
L++S N I + +KLH L L + K + L L L
Sbjct: 179 NPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237
Query: 299 HNFLGREIPSQICSMECCEVFCTITNSVPTNNFLNCQ 335
E +I E C +T + N
Sbjct: 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 6e-29
Identities = 53/235 (22%), Positives = 84/235 (35%), Gaps = 8/235 (3%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNL--SSLRYLFL 58
+L L+ L L N + I + L SL L L N S S +L +SLR+L L
Sbjct: 326 DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383
Query: 59 FENNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGPIPK 116
N + + L L L +++ + + L + + + +
Sbjct: 384 SFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442
Query: 117 CLRNCPNLVRISLEGNNMRGTI-SEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTL 175
+L + + GN+ + S F NLTFLD+S + +L L
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502
Query: 176 NVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL 230
N+S NN+ L +L+ D S N I SL L N +
Sbjct: 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 2e-23
Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 4/186 (2%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
+LR L L N ++ L+ L L + + S +L L YL +
Sbjct: 374 GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432
Query: 60 ENNLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGPIPKC 117
N L L L + N F N N+ N L + +
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177
L +++ NN+ S + +L+ LD S N L+ N+
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552
Query: 178 SMNNIT 183
+ N++
Sbjct: 553 TNNSVA 558
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 3e-40
Identities = 72/320 (22%), Positives = 138/320 (43%), Gaps = 34/320 (10%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+L L+ +T ++ E L+S+ KL + G + + L++L YL L
Sbjct: 20 DLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNG 75
Query: 61 NNLSGSIPPSVGNLM-LTVLALENNHFT-----GNLRHNICRNGALERVIVGGNHFRGPI 114
N ++ P + NL+ LT L + N T NL + L + + ++
Sbjct: 76 NQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTN-------LRELYLNEDNISDIS 126
Query: 115 PKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLST 174
P L N + ++L N+ +S L +L ++++ + + L +
Sbjct: 127 P--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKV--KDVTPIANLTDLYS 181
Query: 175 LNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHL 234
L+++ N I PL +L++L+ F +N I P + L L + N++
Sbjct: 182 LSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-- 235
Query: 235 PSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSE 294
S + +L++L +L + TN+ S + ++ +L KL L++ I ++ L L QL+
Sbjct: 236 LSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVG-SNQISDIS-VLNNLSQLNS 291
Query: 295 LELSHNFLGREIPSQICSME 314
L L++N LG E I +
Sbjct: 292 LFLNNNQLGNEDMEVIGGLT 311
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 2e-39
Identities = 80/303 (26%), Positives = 126/303 (41%), Gaps = 44/303 (14%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
LTNL L+L N +T + P NL L L +G N+ + S++ NL++LR L+L E
Sbjct: 64 YLTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNE 119
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
+N+S P + NL + L L NH L
Sbjct: 120 DNISDISP--LANLTKMYSLNLGANHNLS-------------------------DLSPLS 152
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
N L +++ + ++ +L L ++ N E S L +
Sbjct: 153 NMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQI--EDISPLASLTSLHYFTAYV 208
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
N IT P+ N++ LN + N I P L+ LT L + NQ+ + +
Sbjct: 209 NQITDITPV--ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVK 262
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
LTKL+ LN+ +N+ S + L NL +L+ L L+ Q E + +G L L+ L LS
Sbjct: 263 DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320
Query: 300 NFL 302
N +
Sbjct: 321 NHI 323
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 6e-39
Identities = 64/275 (23%), Positives = 102/275 (37%), Gaps = 20/275 (7%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
NL L L++ N +T + + NL +L +L L + S + NL+ + L L
Sbjct: 86 NLVKLTNLYIGTNKITDISALQ--NLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGA 141
Query: 61 NNLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N+ S + N+ L L + + I L + + N P L
Sbjct: 142 NHNL-SDLSPLSNMTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDISP--LA 196
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
+ +L + N + T L L I +N S +L+ L +
Sbjct: 197 SLTSLHYFTAYVNQI--TDITPVANMTRLNSLKIGNNKI--TDLSPLANLSQLTWLEIGT 252
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
N I+ I + +L+ L ++ N I L+ L L L NQL IG
Sbjct: 253 NQIS-DIN-AVKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
LT L L LS N + + P L +L K+ D +
Sbjct: 309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 3e-30
Identities = 57/280 (20%), Positives = 104/280 (37%), Gaps = 32/280 (11%)
Query: 29 LVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLM-LTVLALENNHFT 87
L P +L+ L + +++ + L +T L +
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA 57
Query: 88 -----GNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAF 142
L + LE + + GN P L N L + + N + T A
Sbjct: 58 SIQGIEYLTN-------LEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISAL 106
Query: 143 GIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLS 202
NL L ++++N S K+ +LN+ N+ + + N++ LN ++
Sbjct: 107 QNLTNLRELYLNEDNI--SDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVT 163
Query: 203 LNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESL 262
+ + P L L L L NQ+ S + SLT L + N+ + + P +
Sbjct: 164 ESKVKDVTP--IANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--V 217
Query: 263 GNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFL 302
N+ +L+ L + + I +L L L QL+ LE+ N +
Sbjct: 218 ANMTRLNSLKIGNNK-ITDLS-PLANLSQLTWLEIGTNQI 255
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 4e-40
Identities = 50/304 (16%), Positives = 97/304 (31%), Gaps = 17/304 (5%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
N + + D+ L + + + ++ +L L GN + + + L L L
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N L L L L NN+ + ++E + N+ +
Sbjct: 68 NVLY-ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VS--CSR 118
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFG-EIASNWGKCPKLSTLNVSM 179
I L N + G + +LD+ N A L LN+
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
N I + ++ + L DLS N + + EF +T + LR N+L+ + +
Sbjct: 179 NFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234
Query: 240 SLTKLEFLNLSTNRFSSL-IPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELS 298
LE +L N F + + ++ + + + +E + +
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE--ECTVPTLGHYG 292
Query: 299 HNFL 302
Sbjct: 293 AYCC 296
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 6e-30
Identities = 43/263 (16%), Positives = 100/263 (38%), Gaps = 16/263 (6%)
Query: 42 SLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGAL 100
++ N + + + +++L ++ + + L L N + ++ L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 101 ERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFG 160
E + + N + L + L + L N + + + ++ L ++NN
Sbjct: 61 ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN-IS 112
Query: 161 EIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVG-KIPKEFGKLNS 219
++ + G + ++ N IT L+ G S + DL LN I + ++
Sbjct: 113 RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 220 LTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFI 279
L L L+ N + + ++ KL+ L+LS+N+ + + + + ++ L + +
Sbjct: 171 LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNK-L 226
Query: 280 QELPKELGKLVQLSELELSHNFL 302
+ K L L +L N
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGF 249
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 1e-28
Identities = 36/305 (11%), Positives = 81/305 (26%), Gaps = 33/305 (10%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRG-SLPSSVGNLSSLRYLFLF 59
+ ++L +N +T L + + L L N+ + + +L +L L
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 60 ENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N + + V L L L +N + +
Sbjct: 178 YNFIY-DVKGQVVFAKLKTLDLSSNKLAF-------------------------MGPEFQ 211
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
+ + ISL N + I +A NL D+ N F ++ V+
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAK 269
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL----IGHLP 235
+ + + +L +L + L
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329
Query: 236 SEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSEL 295
E + + ++ ++ ++I + L+ K +++ +L
Sbjct: 330 CERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGT 389
Query: 296 ELSHN 300
Sbjct: 390 LQQAV 394
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 5e-21
Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 32/197 (16%)
Query: 138 ISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLN 197
I E ++D++ +AS + L++S N +++ ++ + L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 198 EFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFS-- 255
+LS N + + L++L L L N + E+ +E L+ + N S
Sbjct: 62 LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRV 114
Query: 256 -------------------SLIPESLGNLLKLHYLDLSKYQFIQELPKE--LGKLVQLSE 294
L G ++ YLDL + I + L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEH 173
Query: 295 LELSHNFLGREIPSQIC 311
L L +NF+ ++ Q+
Sbjct: 174 LNLQYNFI-YDVKGQVV 189
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 5e-16
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 8/126 (6%)
Query: 185 SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKL 244
+I N + ++ + + + ++ +L L GN L +++ TKL
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 245 EFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGR 304
E LNLS+N + L +L L LDL+ +EL + L ++N +
Sbjct: 61 ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-S 112
Query: 305 EIPSQI 310
+
Sbjct: 113 RVSCSR 118
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 8e-40
Identities = 65/263 (24%), Positives = 105/263 (39%), Gaps = 50/263 (19%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IG+G G+V+RAE + +AVK + EF E+ + ++RH NIV F G
Sbjct: 45 IGAGSFGTVHRAEWHGSD-VAVKILMEQDFHAERV--NEFLREVAIMKRLRHPNIVLFMG 101
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------------------------- 521
+ + ++ EYL RGSL L A E+L
Sbjct: 102 AVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIV 161
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DYRKKCD 573
++ S N+L+D ++ V DFG+++ + + GT ++AP +K D
Sbjct: 162 HRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSD 221
Query: 574 VYSFRVLALEVIKGKHP-RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
VYSF V+ E+ + P L V+ + +P ++ +I+E
Sbjct: 222 VYSFGVILWELATLQQPWGN-----LNPAQVVAAVGFKCKRLEIPRNLNP---QVAAIIE 273
Query: 633 VAFSCLDVSPESRPTMQTITQQL 655
C P RP+ TI L
Sbjct: 274 ---GCWTNEPWKRPSFATIMDLL 293
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 7e-39
Identities = 60/280 (21%), Positives = 111/280 (39%), Gaps = 61/280 (21%)
Query: 414 VEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIE 473
+ +I + + + +G G G V +A+ +K+ +A+K+ S +++K F E+
Sbjct: 2 LHMID-YKEIEVEEVVGRGAFGVVCKAKWRAKD-VAIKQIESE------SERKAFIVELR 53
Query: 474 ALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------ 521
L+++ H NIVK YG C + L+ EY + GSL L
Sbjct: 54 QLSRVNHPNIVKLYGACLNPV--CLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQC 111
Query: 522 ------------------DISSKNVLLDLEHK-AHVSDFGIAKFLKPDSSNWSALVGTYR 562
D+ N+LL + DFG A ++ ++ + G+
Sbjct: 112 SQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQ---THMTNNKGSAA 168
Query: 563 YVAP------DYRKKCDVYSFRVLALEVIKGKHP-RGFVSSILPSPSVINMRLDEMLDPR 615
++AP +Y +KCDV+S+ ++ EVI + P ++ R
Sbjct: 169 WMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGT------R 222
Query: 616 LPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P ++ + S+M C P RP+M+ I + +
Sbjct: 223 PPLIK-NLPKPIESLMT---RCWSKDPSQRPSMEEIVKIM 258
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 3e-38
Identities = 77/302 (25%), Positives = 127/302 (42%), Gaps = 24/302 (7%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L NL +++ +N LT + P + NL LV + + NQ + + NL++L L LF
Sbjct: 66 YLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFN 121
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N ++ I P L L L +N + + +L+++ GN P L N
Sbjct: 122 NQIT-DIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LAN 175
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
L R+ + N + + NL L ++N + G L L+++ N
Sbjct: 176 LTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNGN 231
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240
+ I + +L+ L + DL+ N I P L LT+L L NQ+ S +
Sbjct: 232 QLK-DIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISPLAG 285
Query: 241 LTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN 300
LT L L L+ N+ + P + NL L YL L I ++ + L +L L +N
Sbjct: 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN-ISDIS-PVSSLTKLQRLFFYNN 341
Query: 301 FL 302
+
Sbjct: 342 KV 343
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 4e-37
Identities = 74/323 (22%), Positives = 120/323 (37%), Gaps = 44/323 (13%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L + L +T + +L + L + V L++L +
Sbjct: 22 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 77
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTG-------------NLRHN-------ICRNGA 99
N L+ P + NL L + + NN L +N +
Sbjct: 78 NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 135
Query: 100 LERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFF 159
L R+ + N L +L ++S GN + + L LDIS N
Sbjct: 136 LNRLELSSNTISDISA--LSGLTSLQQLSF-GNQVTD--LKPLANLTTLERLDISSNKV- 189
Query: 160 GEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNS 219
S K L +L + N I+ PL G L+ L+E L+ N + K L +
Sbjct: 190 -SDISVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQL--KDIGTLASLTN 244
Query: 220 LTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFI 279
LT L L NQ+ + + LTKL L L N+ S++ P L L L L+L++ Q +
Sbjct: 245 LTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ-L 299
Query: 280 QELPKELGKLVQLSELELSHNFL 302
+++ + L L+ L L N +
Sbjct: 300 EDIS-PISNLKNLTYLTLYFNNI 321
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 8e-37
Identities = 60/303 (19%), Positives = 110/303 (36%), Gaps = 24/303 (7%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
LT+L++L N +T L P NL +L +L + N+ S + L++L L
Sbjct: 154 GLTSLQQLSF-GNQVTDLKPLA--NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATN 208
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N +S P +G L L L+L N + L + + N P L
Sbjct: 209 NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
L + L N + LT L++++N S L+ L +
Sbjct: 263 GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYF 318
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
NNI+ P+ +L+ L N + L ++ L NQ+ + +
Sbjct: 319 NNISDISPV--SSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISD--LTPLA 372
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
+LT++ L L+ +++ N+ + + I P + +E +++
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITW 430
Query: 300 NFL 302
N
Sbjct: 431 NLP 433
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-25
Identities = 57/264 (21%), Positives = 102/264 (38%), Gaps = 32/264 (12%)
Query: 45 SSVGNLSSLRYLFLFENNLSGSIPPSVGNL-MLTVLALENNHFT-----GNLRHNICRNG 98
+ L+ L + N++ ++ +L +T L + L +
Sbjct: 18 FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNN------ 69
Query: 99 ALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNF 158
L ++ N P L+N LV I + N + NLT L + +N
Sbjct: 70 -LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLFNNQI 124
Query: 159 FGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLN 218
L+ L +S N I+ L L++L + N + P L
Sbjct: 125 TDIDPL--KNLTNLNRLELSSNTISDISAL--SGLTSLQQLSFG-NQVTDLKP--LANLT 177
Query: 219 SLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQF 278
+L +L + N++ S + LT LE L + N+ S + P LG L L L L+ Q
Sbjct: 178 TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ- 232
Query: 279 IQELPKELGKLVQLSELELSHNFL 302
++++ L L L++L+L++N +
Sbjct: 233 LKDIG-TLASLTNLTDLDLANNQI 255
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 11/132 (8%)
Query: 172 LSTLNVSMNN-ITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL 230
L + ++ + I + L+ + L ++ + L+ +T L +
Sbjct: 3 LGSATITQDTPINQIFTDT--ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58
Query: 231 IGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLV 290
+ L L +N S N+ + + P L NL KL + ++ I ++ L L
Sbjct: 59 KS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN-NNQIADIT-PLANLT 112
Query: 291 QLSELELSHNFL 302
L+ L L +N +
Sbjct: 113 NLTGLTLFNNQI 124
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 8e-38
Identities = 62/268 (23%), Positives = 100/268 (37%), Gaps = 55/268 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IG G G VYRA E +AVK D + E + ++H NI+ G
Sbjct: 15 IGIGGFGKVYRAFWIGDE-VAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRG 73
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------------------------D 522
C + L+ E+ + G L LS ++ D
Sbjct: 74 VCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRD 133
Query: 523 ISSKNVLLDLEHKAH--------VSDFGIAKFLKPDSSNWSALVGTYRYVAP------DY 568
+ S N+L+ + + ++DFG+A+ + + G Y ++AP +
Sbjct: 134 LKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTK--MSAAGAYAWMAPEVIRASMF 191
Query: 569 RKKCDVYSFRVLALEVIKGKHP-RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627
K DV+S+ VL E++ G+ P RG + +V L +P P+
Sbjct: 192 SKGSDVWSYGVLLWELLTGEVPFRG-----IDGLAVAYGVAMNKLALPIPSTCPE---PF 243
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ME C + P SRP+ I QL
Sbjct: 244 AKLME---DCWNPDPHSRPSFTNILDQL 268
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 2e-37
Identities = 62/319 (19%), Positives = 108/319 (33%), Gaps = 82/319 (25%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFA 470
E +++ IG GR+G+VY+ L + AVK F+ +++ F
Sbjct: 3 AAASEPSLDLDNLKLLELIGRGRYGAVYKGSLDERPV-AVKVFSFA-------NRQNFIN 54
Query: 471 EIE--ALTKIRHRNIVKFYGFCSHARHSI-----LIYEYLKRGSLATNLSNDAAAEEL-- 521
E + + H NI +F L+ EY GSL LS +
Sbjct: 55 EKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSDWVSSC 114
Query: 522 ------------------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
D++S+NVL+ + +SDFG++ L +
Sbjct: 115 RLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNR 174
Query: 552 SNWS--------ALVGTYRYVAP-------------DYRKKCDVYSFRVLALEVIKGKHP 590
+ VGT RY+AP K+ D+Y+ ++ E+
Sbjct: 175 LVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTD 234
Query: 591 RG-----------FVSSILPSPSVINMR---LDEMLDPRLPPPSPDVQGKLISIMEVAFS 636
F + + P+ +M+ E P+ P + + S+ E
Sbjct: 235 LFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIED 294
Query: 637 CLDVSPESRPTMQTITQQL 655
C D E+R T Q +++
Sbjct: 295 CWDQDAEARLTAQXAEERM 313
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 5e-37
Identities = 62/263 (23%), Positives = 107/263 (40%), Gaps = 47/263 (17%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IGSG G+VY+ + +AVK N P+ Q + F E+ L K RH NI+ F G
Sbjct: 32 IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQ--LQAFKNEVGVLRKTRHVNILLFMG 87
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------------------------DI 523
+ + + +I + ++ + SL +L E+ D+
Sbjct: 88 YSTAPQLAI-VTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDL 146
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLK--PDSSNWSALVGTYRYVAP---------DYRKKC 572
S N+ L ++ + DFG+A S + L G+ ++AP Y +
Sbjct: 147 KSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQS 206
Query: 573 DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
DVY+F ++ E++ G+ P S+I +I M L P L + ++ +M
Sbjct: 207 DVYAFGIVLYELMTGQLP---YSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMA 263
Query: 633 VAFSCLDVSPESRPTMQTITQQL 655
CL + RP+ I ++
Sbjct: 264 ---ECLKKKRDERPSFPRILAEI 283
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 7e-37
Identities = 56/314 (17%), Positives = 112/314 (35%), Gaps = 23/314 (7%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L N + + +++ + L + + + L L Q + +++ L++
Sbjct: 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102
Query: 61 NNLSGSIPPSVGNLM--LTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGPIPKC 117
N + +PP V + LTVL LE N + +L I N L + + N+
Sbjct: 103 NAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177
+ +L + L N + + + +L ++S N S + L+
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDA 212
Query: 178 SMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSE 237
S N+I + L L N++ L ++ L N+ + +
Sbjct: 213 SHNSINV---VRGPVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNE-LEKIMYH 266
Query: 238 I-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELE 296
+ +LE L +S NR + + + L LDLS + + + + +L L
Sbjct: 267 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLY 324
Query: 297 LSHNFLGREIPSQI 310
L HN + +
Sbjct: 325 LDHNSI-VTLKLST 337
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 9e-32
Identities = 58/317 (18%), Positives = 107/317 (33%), Gaps = 22/317 (6%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
++H+ E L + + + R LP+++ + + L L
Sbjct: 19 YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 77
Query: 60 ENNLSGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGPIPK 116
+ + I + L + N L ++ +N L +++ N
Sbjct: 78 DLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRG 135
Query: 117 CLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLN 176
N P L +S+ NN+ + F +L L +S N + P L N
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL--SLIPSLFHAN 192
Query: 177 VSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPS 236
VS N ++ + + E D S N I + LT L L+ N L +
Sbjct: 193 VSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD--TA 242
Query: 237 EIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELE 296
+ + L ++LS N ++ + +L L +S + + L + L L+
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLD 301
Query: 297 LSHNFLGREIPSQICSM 313
LSHN L +
Sbjct: 302 LSHNHL-LHVERNQPQF 317
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 6e-29
Identities = 60/279 (21%), Positives = 104/279 (37%), Gaps = 22/279 (7%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
N+ L L L N L+ L N L L + N + +SL+ L L
Sbjct: 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLS 173
Query: 60 ENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N L+ + S L + N + + A+E + N +
Sbjct: 174 SNRLT-HVDLS-LIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINV-VRG--P 223
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN-WGKCPKLSTLNVS 178
L + L+ NN+ T + Y L +D+S N +I + + K +L L +S
Sbjct: 224 VNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYIS 280
Query: 179 MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI 238
N + ++ L + TL DLS NH++ + + + + L L L N I L +
Sbjct: 281 NNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS-IVTLK--L 335
Query: 239 GSLTKLEFLNLSTNRFSSL-IPESLGNLLKLHYLDLSKY 276
+ L+ L LS N + + N+ + D ++
Sbjct: 336 STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 4e-24
Identities = 50/299 (16%), Positives = 107/299 (35%), Gaps = 21/299 (7%)
Query: 19 IPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSV--GNLML 76
I + + + L++ + + + + +P ++ +
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71
Query: 77 TVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRG 136
+L L + + ++++ +G N R P +N P L + LE N++
Sbjct: 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131
Query: 137 TISEAFGIYLNLTFLDISDNNFFGEIASN-WGKCPKLSTLNVSMNNITRSIPLEIGNLST 195
F LT L +S+NN I + + L L +S N +T +++ + +
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPS 187
Query: 196 LNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFS 255
L ++S N + ++ +L N I + +L L L N +
Sbjct: 188 LFHANVSYNLL-----STLAIPIAVEELDASHNS-INVVRG--PVNVELTILKLQHNNLT 239
Query: 256 SLIPESLGNLLKLHYLDLSKYQFIQELPKE-LGKLVQLSELELSHNFLGREIPSQICSM 313
L N L +DLS + ++++ K+ +L L +S+N L + +
Sbjct: 240 DT--AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPI 294
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 5/128 (3%)
Query: 185 SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLTK 243
I + + + + E LN+ + + + + LP+ + S +
Sbjct: 12 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQ 70
Query: 244 LEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKE-LGKLVQLSELELSHNFL 302
+E LNL+ + + + + L + + I+ LP + L+ L L N L
Sbjct: 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTVLVLERNDL 129
Query: 303 GREIPSQI 310
+P I
Sbjct: 130 -SSLPRGI 136
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 2e-36
Identities = 65/272 (23%), Positives = 110/272 (40%), Gaps = 59/272 (21%)
Query: 429 IGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQ---KEFFAEIEALTKIRHRNIV 484
IG G G V++ L K +A+K + +EF E+ ++ + H NIV
Sbjct: 27 IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLSN---------------DAAA--EEL------ 521
K YG + ++ E++ G L L + D A E +
Sbjct: 87 KLYGLMHNPPR--MVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPP 144
Query: 522 ----DISSKNVLLDLEHK-----AHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------ 566
D+ S N+ L + A V+DFG+++ S S L+G ++++AP
Sbjct: 145 IVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQ-SVHSV--SGLLGNFQWMAPETIGAE 201
Query: 567 --DYRKKCDVYSFRVLALEVIKGKHP-RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623
Y +K D YSF ++ ++ G+ P + INM +E L P +P P
Sbjct: 202 EESYTEKADTYSFAMILYTILTGEGPFDEYSYG---KIKFINMIREEGLRPTIPEDCPP- 257
Query: 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+L +++E C P+ RP I ++L
Sbjct: 258 --RLRNVIE---LCWSGDPKKRPHFSYIVKEL 284
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 6e-36
Identities = 70/311 (22%), Positives = 114/311 (36%), Gaps = 46/311 (14%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
L++ ++ LT L P + L + N SLP+ L R L + N
Sbjct: 39 NNGNAVLNVGESGLTTL-PDC--LPAHITTLVIPDNNLT-SLPALPPEL---RTLEVSGN 91
Query: 62 NLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
L+ S+P L+ L++ + H L ++ + GN +P
Sbjct: 92 QLT-SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLTS-LPVLP-- 140
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
P L +S+ N + ++ L L +N + L L+VS N
Sbjct: 141 -PGLQELSVSDNQLA-SLPALPS---ELCKLWAYNNQL-TSLPMLPSG---LQELSVSDN 191
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240
+ S+P L L ++ L + P + L +LI+ GN+L LP
Sbjct: 192 QLA-SLPTLPSELYKLWAYNNRLTSL----PAL---PSGLKELIVSGNRL-TSLPVLPSE 242
Query: 241 LTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN 300
L +L +S NR +SL P L L + + Q + LP+ L L + + L N
Sbjct: 243 LKEL---MVSGNRLTSL-PMLPSGL---LSLSVYRNQ-LTRLPESLIHLSSETTVNLEGN 294
Query: 301 FLGREIPSQIC 311
L E Q
Sbjct: 295 PL-SERTLQAL 304
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-26
Identities = 59/315 (18%), Positives = 98/315 (31%), Gaps = 52/315 (16%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
LR L + N LT L P L L LP+ S L L++F
Sbjct: 79 LPPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTH----LPAL---PSGLCKLWIFG 130
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N L+ S+P L L++ +N +L L ++ N +P
Sbjct: 131 NQLT-SLPVLPPGL--QELSVSDNQLA-SLPALPSE---LCKLWAYNNQLTS-LPMLP-- 180
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDN-------------------NFFGE 161
L +S+ N + ++ L L +N N
Sbjct: 181 -SGLQELSVSDNQLA-SLPTLPS---ELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS 235
Query: 162 IASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLT 221
+ + L L VS N +T S+P+ L +L + N + ++P+ L+S T
Sbjct: 236 LPVLPSE---LKELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSET 287
Query: 222 KLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQE 281
+ L GN L + +T + RF + LH + +
Sbjct: 288 TVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH--LAAADWLVPA 345
Query: 282 LPKELGKLVQLSELE 296
E +
Sbjct: 346 REGEPAPADRWHMFG 360
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 1e-18
Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 20/146 (13%)
Query: 169 CPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGN 228
+ LNV + +T ++P + + + N++ +P +L L + GN
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPEL---RTLEVSGN 91
Query: 229 QLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGK 288
QL LP L +L + +L L L + Q + LP
Sbjct: 92 QLT-SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQ-LTSLPVLPP- 141
Query: 289 LVQLSELELSHNFLGREIPSQICSME 314
L EL +S N L +P+ +
Sbjct: 142 --GLQELSVSDNQL-ASLPALPSELC 164
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 4e-35
Identities = 68/305 (22%), Positives = 112/305 (36%), Gaps = 9/305 (2%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
T R L L N + L E + L +L L N P + NL +LR L L N
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 63 LSGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
L IP V G LT L + N L + L+ + VG N +
Sbjct: 92 LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
+L +++LE N+ +EA L L + N ++ + +L L +S
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKE-FGKLNSLTKLILRGNQLIGHLPSEI- 238
++ L ++ ++ +P L L L L N I + +
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP-ISTIEGSML 268
Query: 239 GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL-GKLVQLSELEL 297
L +L+ + L + + + P + L L L++S Q + L + + + L L L
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLIL 327
Query: 298 SHNFL 302
N L
Sbjct: 328 DSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 2e-34
Identities = 63/280 (22%), Positives = 116/280 (41%), Gaps = 11/280 (3%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
+ +L EL L +N ++ + P NL +L LGL N+ + +P V LS+L L +
Sbjct: 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDIS 112
Query: 60 ENNLSGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKC 117
EN + + + L L + +N +LE++ + + +
Sbjct: 113 ENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177
L + L+ + L N+ +F L L+IS + + N L++L++
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231
Query: 178 SMNNITRSIPLE-IGNLSTLNEFDLSLNHIVGKIPKE-FGKLNSLTKLILRGNQLIGHLP 235
+ N+T ++P + +L L +LS N I I +L L ++ L G Q + +
Sbjct: 232 THCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQ-LAVVE 288
Query: 236 SEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
L L LN+S N+ ++L ++ L L L
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-24
Identities = 56/260 (21%), Positives = 86/260 (33%), Gaps = 33/260 (12%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
NL NLR L LR N L + L +L KL + N+ L +L +L+ L + +
Sbjct: 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137
Query: 61 NNLSGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCL 118
N+L I G L L LE + T + L + + +
Sbjct: 138 NDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196
Query: 119 RNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN-WGKCPKLSTLNV 177
+ L + + T++ LNLT L I+ N + L LN+
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNL 255
Query: 178 SMNNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKE----------------------- 213
S N I+ +I + L L E L + +
Sbjct: 256 SYNPIS-TIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313
Query: 214 --FGKLNSLTKLILRGNQLI 231
F + +L LIL N L
Sbjct: 314 SVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 4e-21
Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 8/195 (4%)
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN-WGKCPKLSTLNVSMN 180
+ L N ++ + F + +L L++++N + + L TL + N
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSN 90
Query: 181 NITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI- 238
+ IPL + LS L + D+S N IV + F L +L L + N + ++
Sbjct: 91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAF 148
Query: 239 GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKE-LGKLVQLSELEL 297
L LE L L +S+ E+L +L L L L I + +L +L LE+
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEI 207
Query: 298 SHNFLGREIPSQICS 312
SH +
Sbjct: 208 SHWPYLDTMTPNCLY 222
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 6e-35
Identities = 69/342 (20%), Positives = 116/342 (33%), Gaps = 61/342 (17%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNL-------------KSLVKLGLGGNQFRGSLPSSV 47
N+ + E + + P + +L L SLP
Sbjct: 32 NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELP 90
Query: 48 GNLSSLRYLFLFENNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVG 106
+L SL N+L+ +P +L L V + LE + V
Sbjct: 91 PHLESLV---ASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVS 139
Query: 107 GNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNW 166
N +P+ L+N L I ++ N+ + + + +L F+ +N E
Sbjct: 140 NNQLEK-LPE-LQNSSFLKIIDVDNNS----LKKLPDLPPSLEFIAAGNNQL--EELPEL 191
Query: 167 GKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILR 226
P L+ + N++ +P +L ++ N + + E L LT +
Sbjct: 192 QNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNIL--EELPELQNLPFLTTIYAD 245
Query: 227 GNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL 286
N L LP SL LN+ N + L PE +L L + + + ELP L
Sbjct: 246 NNLLK-TLPDLPPSLEA---LNVRDNYLTDL-PELPQSLTFLDVSENI-FSGLSELPPNL 299
Query: 287 GKL--------------VQLSELELSHNFLGREIPSQICSME 314
L L EL +S+N L E+P+ +E
Sbjct: 300 YYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPPRLE 340
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 9e-33
Identities = 77/342 (22%), Positives = 119/342 (34%), Gaps = 60/342 (17%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
EL L + L+ L P +L+SLV N LP +L SL
Sbjct: 70 DRQAHELELNNLGLSSL-PELPPHLESLV---ASCNSLT-ELPELPQSLKSLLVDNNNLK 124
Query: 62 NLSGSIP---------------PSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIV 105
LS P P + N L ++ ++NN L +LE +
Sbjct: 125 ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAA 180
Query: 106 GGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN 165
G N +P+ L+N P L I + N+ + + + L+L + +N E
Sbjct: 181 GNNQLEE-LPE-LQNLPFLTAIYADNNS----LKKLPDLPLSLESIVAGNNIL--EELPE 232
Query: 166 WGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLIL 225
P L+T+ N + ++P +L LN D L +P+ L L
Sbjct: 233 LQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLT----DLPELPQSLTFLDVSEN 287
Query: 226 RGNQLIGHLPS-------------EIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLD 272
+ L P+ LE LN+S N+ L P L L
Sbjct: 288 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-PALPPRL---ERLI 343
Query: 273 LSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSME 314
S + E+P+ L +L + +N L RE P S+E
Sbjct: 344 ASFNH-LAEVPELPQNL---KQLHVEYNPL-REFPDIPESVE 380
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 6e-32
Identities = 57/328 (17%), Positives = 108/328 (32%), Gaps = 58/328 (17%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+ T L+E + LT + P E N+KS + +++ + P G + L +
Sbjct: 9 SNTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
L L N + +L LE ++ N +P+ ++
Sbjct: 68 CLDRQ----------AHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQS 112
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNF--FGEIASNWGKCPKLSTLNVS 178
+L+ + + L +L +S+N E+ L ++V
Sbjct: 113 LKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLEKLPEL----QNSSFLKIIDVD 161
Query: 179 MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL------IG 232
N++ +P +L + N + ++P E L LT + N L
Sbjct: 162 NNSLK-KLPDLPPSLEFI---AAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKLPDLPL 215
Query: 233 HL------------PSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQ 280
L E+ +L L + N +L P+ +L L+ D +
Sbjct: 216 SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL-PDLPPSLEALNVRDNY----LT 270
Query: 281 ELPKELGKLVQLSELELSHNFLGREIPS 308
+LP+ L L E + L P+
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPPN 298
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-31
Identities = 50/309 (16%), Positives = 95/309 (30%), Gaps = 42/309 (13%)
Query: 18 LIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLT 77
I + L + + +P N+ S + + + PP G
Sbjct: 2 FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60
Query: 78 VLALENNHFTGNLRHNICRN----------GALERVIVGGNHFRGPIPKCLRNCPNLVRI 127
++ + N LE ++ N +P+ ++ +L+
Sbjct: 61 AVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVD 119
Query: 128 SLEGNNMRGTISEAFGIYLNLTFLDISDNNF--FGEIASNWGKCPKLSTLNVSMNNITRS 185
+ + L +L +S+N E+ L ++V N++
Sbjct: 120 NNNLKALSDLPP-------LLEYLGVSNNQLEKLPEL----QNSSFLKIIDVDNNSLK-K 167
Query: 186 IPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLE 245
+P +L + N + ++P E L LT + N L LP SL
Sbjct: 168 LPDLPPSLEFI---AAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLES-- 219
Query: 246 FLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGRE 305
+ N L L NL L + ++ LP L L + N+L +
Sbjct: 220 -IVAGNNILEEL--PELQNLPFLTTIYADNNL-LKTLPDLPPS---LEALNVRDNYL-TD 271
Query: 306 IPSQICSME 314
+P S+
Sbjct: 272 LPELPQSLT 280
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 8e-29
Identities = 64/316 (20%), Positives = 106/316 (33%), Gaps = 54/316 (17%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
+L + +N L L E NL L + N + LP SL + N
Sbjct: 172 PPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLK-KLPDL---PLSLESIVAGNN 225
Query: 62 NLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
L P + NL LT + +NN L LE + V N+ +P+ ++
Sbjct: 226 ILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLTD-LPELPQS 278
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
L + + NL +L+ S N I S P L LNVS N
Sbjct: 279 LTFLDVSENIFSGLSELPP-------NLYYLNASSNE----IRSLCDLPPSLEELNVSNN 327
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240
+ +P L L S NH+ ++P+ +L +L + N L P S
Sbjct: 328 KLI-ELPALPPRLERL---IASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIPES 378
Query: 241 LT----------------KLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPK 284
+ L+ L++ TN P+ ++ L ++ + +
Sbjct: 379 VEDLRMNSHLAEVPELPQNLKQLHVETNPLREF-PDIPESV---EDLRMNSERVVDPYEF 434
Query: 285 ELGKLVQLSELELSHN 300
+L + H+
Sbjct: 435 AHETTDKLEDDVFEHH 450
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-26
Identities = 57/293 (19%), Positives = 101/293 (34%), Gaps = 50/293 (17%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
NL L ++ +N L L SL + G N + NL L ++
Sbjct: 193 NLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNIL--EELPELQNLPFLTTIYADN 246
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N L ++P +L L + +N+ T +L +L + V N F G + +
Sbjct: 247 NLLK-TLPDLPPSL--EALNVRDNYLT-DLPELP---QSLTFLDVSENIFSG-LSELP-- 296
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
PNL ++ N I + +L L++S+N E+ + P+L L S N
Sbjct: 297 -PNLYYLNASSNE----IRSLCDLPPSLEELNVSNNKL-IELPAL---PPRLERLIASFN 347
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKL----------------NSLTKLI 224
++ +P NL L + N + + P + +L +L
Sbjct: 348 HLA-EVPELPQNLKQL---HVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLH 402
Query: 225 LRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQ 277
+ N L P S+ L +++ R + KL +
Sbjct: 403 VETNPLR-EFPDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVFEHHH 451
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 8e-35
Identities = 51/267 (19%), Positives = 92/267 (34%), Gaps = 59/267 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+ G +++ + + VK S + + ++F E L H N++ G
Sbjct: 18 LNENHSGELWKGRWQGND-IVVKVLKVRDWSTRKS--RDFNEECPRLRIFSHPNVLPVLG 74
Query: 489 FCSH--ARHSILIYEYLKRGSL----------------ATNLSNDAA-------AEE--- 520
C A H LI ++ GSL A + D A E
Sbjct: 75 ACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLI 134
Query: 521 --LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP---------DYR 569
++S++V++D + A +S + + + +VAP R
Sbjct: 135 PRHALNSRSVMIDEDMTARISMADVKFSFQSPGR-----MYAPAWVAPEALQKKPEDTNR 189
Query: 570 KKCDVYSFRVLALEVIKGKHP-RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
+ D++SF VL E++ + P L + + E L P +PP +
Sbjct: 190 RSADMWSFAVLLWELVTREVPFAD-----LSNMEIGMKVALEGLRPTIPPGISP---HVS 241
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQL 655
+M+ C++ P RP I L
Sbjct: 242 KLMK---ICMNEDPAKRPKFDMIVPIL 265
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-34
Identities = 57/272 (20%), Positives = 98/272 (36%), Gaps = 57/272 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+G G G + + V K + Q+ F E++ + + H N++KF G
Sbjct: 18 LGKGCFGQAIKVTHRETGEVMVMKELIRFDEET---QRTFLKEVKVMRCLEHPNVLKFIG 74
Query: 489 FCSHARHSILIYEYLKRGSLATNLSN---------------DAAA-----EEL-----DI 523
+ I EY+K G+L + + D A+ + D+
Sbjct: 75 VLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDL 134
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFL--------------KPDSSNWSALVGTYRYVAP--- 566
+S N L+ V+DFG+A+ + KPD +VG ++AP
Sbjct: 135 NSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMI 194
Query: 567 ---DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623
Y +K DV+SF ++ E+I + P ++ L+ P P+
Sbjct: 195 NGRSYDEKVDVFSFGIVLCEIIGRVNADPD-----YLPRTMDFGLNVRGFLDRYCP-PNC 248
Query: 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
I C D+ PE RP+ + L
Sbjct: 249 PPSFFPIT---VRCCDLDPEKRPSFVKLEHWL 277
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 3e-34
Identities = 51/273 (18%), Positives = 89/273 (32%), Gaps = 62/273 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IG GR G VY +A++ + ++ K F E+ A + RH N+V F G
Sbjct: 41 IGKGRFGQVYHGRW--HGEVAIRLIDIERDNEDQL--KAFKREVMAYRQTRHENVVLFMG 96
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------------------------DI 523
C H +I K +L + + + ++ D+
Sbjct: 97 ACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDL 156
Query: 524 SSKNVLLDLEHKAHVSDFGIAK-----FLKPDSSNWSALVGTYRYVAP------------ 566
SKNV D K ++DFG+ G ++AP
Sbjct: 157 KSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEE 215
Query: 567 ---DYRKKCDVYSFRVLALEVIKGKHP-RGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622
+ K DV++ + E+ + P + P+ ++I M +
Sbjct: 216 DKLPFSKHSDVFALGTIWYELHAREWPFKT-----QPAEAIIWQMGTGM---KPNLSQIG 267
Query: 623 VQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ ++ I+ C E RPT + L
Sbjct: 268 MGKEISDILL---FCWAFEQEERPTFTKLMDML 297
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 4e-34
Identities = 72/294 (24%), Positives = 112/294 (38%), Gaps = 77/294 (26%)
Query: 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIE--ALTKIRHRNIVK 485
C+G GR+G V+R + AVK F+S D+K +F E E +RH NI+
Sbjct: 15 CVGKGRYGEVWRGSWQGENV-AVKIFSSR-------DEKSWFRETELYNTVMLRHENILG 66
Query: 486 FYGFCSHARHSI----LIYEYLKRGSL-------------ATNLSNDAAA------EEL- 521
F +RHS LI Y + GSL + A+ E+
Sbjct: 67 FIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIF 126
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSS----NWSALVGTYRYVAP 566
D+ SKN+L+ + ++D G+A ++ + VGT RY+AP
Sbjct: 127 GTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAP 186
Query: 567 ------------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSI-LP-------SPSVINM 606
D K+ D+++F ++ EV + G V P PS +M
Sbjct: 187 EVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDM 246
Query: 607 R---LDEMLDPRLPP--PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
R + P +P S L +M+ C +P +R T I + L
Sbjct: 247 RKVVCVDQQRPNIPNRWFSDPTLTSLAKLMK---ECWYQNPSARLTALRIKKTL 297
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 5e-34
Identities = 56/307 (18%), Positives = 112/307 (36%), Gaps = 24/307 (7%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
L N + + +++ + L + + + L L Q + + +++ L++
Sbjct: 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG 107
Query: 60 ENNLSGSIPPSVGNLM--LTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGPIPK 116
N + +PP V + LTVL LE N + +L I N L + + N+
Sbjct: 108 FNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDD 165
Query: 117 CLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLN 176
+ +L + L N + + + +L ++S N S + L+
Sbjct: 166 TFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELD 217
Query: 177 VSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPS 236
S N+I + L L N++ L ++ L N+ + +
Sbjct: 218 ASHNSINV---VRGPVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNE-LEKIMY 271
Query: 237 EI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSEL 295
+ +LE L +S NR + + + L LDLS + + + + +L L
Sbjct: 272 HPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENL 329
Query: 296 ELSHNFL 302
L HN +
Sbjct: 330 YLDHNSI 336
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 1e-29
Identities = 56/313 (17%), Positives = 104/313 (33%), Gaps = 20/313 (6%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
++H+ E L + + + R + + + + L L +
Sbjct: 25 YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 84
Query: 61 NNLSGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGPIPKC 117
+ I + L + N L ++ +N L +++ N
Sbjct: 85 LQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGI 142
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177
N P L +S+ NN+ + F +L L +S N + + P L NV
Sbjct: 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSL--IPSLFHANV 199
Query: 178 SMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSE 237
S N ++ + + E D S N I + LT L L+ N L
Sbjct: 200 SYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTAW- 249
Query: 238 IGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELEL 297
+ + L ++LS N ++ + +L L +S + + L + L L+L
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDL 308
Query: 298 SHNFLGREIPSQI 310
SHN L +
Sbjct: 309 SHNHL-LHVERNQ 320
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-27
Identities = 53/276 (19%), Positives = 85/276 (30%), Gaps = 45/276 (16%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
N+ L L L N L+ L N L L + N + +SL+ L L
Sbjct: 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLS 179
Query: 60 ENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N L+ + S+ L + N + L
Sbjct: 180 SNRLT-HVDLSL-IPSLFHANVSYNLLST-----------------------------LA 208
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
+ + N++ + LT L + NN + P L +++S
Sbjct: 209 IPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNL--TDTAWLLNYPGLVEVDLSY 263
Query: 180 NNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI 238
N + I + L +S N +V + + +L L L N L+ H+
Sbjct: 264 NELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 320
Query: 239 GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
+LE L L N +L L L L LS
Sbjct: 321 PQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLS 353
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 8e-12
Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 5/129 (3%)
Query: 184 RSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLT 242
+ I + + + + E LN+ + + + + LP+ + S
Sbjct: 17 KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFR 75
Query: 243 KLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKE-LGKLVQLSELELSHNF 301
++E LNL+ + + + + L + + I+ LP + L+ L L N
Sbjct: 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTVLVLERND 134
Query: 302 LGREIPSQI 310
L +P I
Sbjct: 135 L-SSLPRGI 142
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 1e-33
Identities = 62/314 (19%), Positives = 113/314 (35%), Gaps = 22/314 (7%)
Query: 1 NLTNLRELHL------RDNYLTGLIPTETWNLKSLVKLGLGGNQ---FRGSLPSSVGNLS 51
L L L + L + L +L + + L+
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282
Query: 52 SLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFR 111
++ L + + N L L N F ++ L+R+ N
Sbjct: 283 NVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFG-QFPTLKLKS--LKRLTFTSNKGG 338
Query: 112 GPIPKCLRNCPNLVRISLEGNNMR--GTISEAFGIYLNLTFLDISDNNFFGEIASNWGKC 169
+ P+L + L N + G S++ +L +LD+S N ++SN+
Sbjct: 339 NAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 395
Query: 170 PKLSTLNVSMNNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGN 228
+L L+ +N+ + + +L L D+S H F L+SL L + GN
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 229 QLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKE-L 286
+ +I L L FL+LS + L P + +L L L+++ Q ++ +P
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIF 514
Query: 287 GKLVQLSELELSHN 300
+L L ++ L N
Sbjct: 515 DRLTSLQKIWLHTN 528
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 7e-32
Identities = 64/329 (19%), Positives = 104/329 (31%), Gaps = 29/329 (8%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSL----VKLGLGGNQFRGSLPSSVGNLSSLRYL 56
NLTNL L L N + + T+ L + + L L N + L L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKL 205
Query: 57 FLFENNLSGSIPPSVGNLM--LTVLALENNHFTGNLR---------HNICRNGALERVIV 105
L N S ++ + + L V L F +C E +
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265
Query: 106 GGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN 165
+++ I N+ SL + ++ L++ + F
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPT-- 321
Query: 166 WGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHI--VGKIPKEFGKLNSLTKL 223
K L L + N + +L +L DLS N + G + SL L
Sbjct: 322 -LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 224 ILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPES-LGNLLKLHYLDLSKYQFIQEL 282
L N +I + S L +LE L+ + + S +L L YLD+S +
Sbjct: 379 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVA 436
Query: 283 PKE-LGKLVQLSELELSHNFLGREIPSQI 310
L L L+++ N I
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 2e-29
Identities = 64/355 (18%), Positives = 115/355 (32%), Gaps = 53/355 (14%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFR-GSLPSSVGNLSSLRYLFLF 59
L++L++L + L L +LK+L +L + N + LP NL++L +L L
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 60 ENNLSG---------------------------SIPPSVGNLM-LTVLALENNHFTGNLR 91
N + I P + L L L NN + N+
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217
Query: 92 HNICRNGA-------LERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRG---TISEA 141
+ A + + L NL + I +
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277
Query: 142 FGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDL 201
F N++ + E ++ L + + L++ +L L
Sbjct: 278 FNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL---TF 332
Query: 202 SLNHIVGKIPKEFGKLNSLTKLILRGNQL--IGHLPSEIGSLTKLEFLNLSTNRFSSLIP 259
+ N L SL L L N L G T L++L+LS N + +
Sbjct: 333 TSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MS 389
Query: 260 ESLGNLLKLHYLDLSKYQFIQELPKE--LGKLVQLSELELSHNFLGREIPSQICS 312
+ L +L +LD + ++++ + L L L++SH R + I +
Sbjct: 390 SNFLGLEQLEHLDFQ-HSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFN 442
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 3e-28
Identities = 59/318 (18%), Positives = 100/318 (31%), Gaps = 24/318 (7%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
+ + L L N L L ++ L L L + + + +LS L L L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 63 LSGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFR-GPIPKCLR 119
+ S+ G L L + I L+ + V N + +P+
Sbjct: 88 IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDIS---DNNFFGEIASNWGKCPKLSTLN 176
N NL + L N ++ + + L++S N I K +L L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206
Query: 177 VSMNNITRSIPLE-IGNLSTLNEFDLSL------NHIVGKIPKEFGKLNSLTKLILRGNQ 229
+ N + ++ I L+ L L L ++ L +LT R
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 230 L---IGHLPSEIGSLTKLEFLNLSTNRFSSLIPES-LGNLLKLHYLDLSKYQFIQELPKE 285
L + + LT + +L + + S L ++ QF
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT----- 321
Query: 286 LGKLVQLSELELSHNFLG 303
KL L L + N G
Sbjct: 322 -LKLKSLKRLTFTSNKGG 338
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 2e-26
Identities = 55/261 (21%), Positives = 91/261 (34%), Gaps = 15/261 (5%)
Query: 1 NLTNLRELHLRDNYLTGLIP-TETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLF 59
LTN+ L + + + + + L + QF L SL+ L
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT------LKLKSLKRLTFT 333
Query: 60 ENNLSGSIPPSVGNLMLTVLALENNHFT--GNLRHNICRNGALERVIVGGNHFRGPIPKC 117
N + V L L L N + G + +L+ + + N +
Sbjct: 334 SNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN 391
Query: 118 LRNCPNLVRISLEGNNMRGTISE-AFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLN 176
L + + +N++ F NL +LDIS + + L L
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451
Query: 177 VSMNNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLP 235
++ N+ + +I L L DLS + P F L+SL L + NQL +P
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVP 510
Query: 236 SEI-GSLTKLEFLNLSTNRFS 255
I LT L+ + L TN +
Sbjct: 511 DGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 7e-22
Identities = 52/255 (20%), Positives = 87/255 (34%), Gaps = 15/255 (5%)
Query: 60 ENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
E N IP ++ L L N ++ L+ + + + +
Sbjct: 16 ELNFY-KIPDNLPFS-TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
+ +L + L GN ++ AF +L L + N G L LNV+
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 180 NNITR-SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLT----KLILRGNQLIGHL 234
N I +P NL+ L DLS N I + L+ + L L N + +
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFI 192
Query: 235 PSEIGSLTKLEFLNLSTNRFS-SLIPESLGNLLKLHYLDLSKYQF-----IQELPKE-LG 287
+L L L N S +++ + L L L +F +++ K L
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252
Query: 288 KLVQLSELELSHNFL 302
L L+ E +L
Sbjct: 253 GLCNLTIEEFRLAYL 267
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 1e-20
Identities = 49/224 (21%), Positives = 78/224 (34%), Gaps = 32/224 (14%)
Query: 117 CLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLN 176
C+ PN+ N + + LD+S N + ++ P+L L+
Sbjct: 3 CVEVVPNIT-YQCMELNFYKIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLD 58
Query: 177 VSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPS 236
+S I +LS L+ L+ N I F L+SL KL+ L
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 237 EIGSLTKLEFLNLSTNRFSSL-IPESLGNLLKLHYLDLSKYQF----------------- 278
IG L L+ LN++ N S +PE NL L +LDLS +
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 279 ----------IQELPKELGKLVQLSELELSHNFLGREIPSQICS 312
+ + K ++L +L L +NF +
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 5e-18
Identities = 37/168 (22%), Positives = 60/168 (35%), Gaps = 12/168 (7%)
Query: 170 PKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQ 229
L++S N + + L DLS I + L+ L+ LIL GN
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 230 LIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS--KYQFIQELPKELG 287
+ L+ L+ L +SL +G+L L L+++ Q + LP+
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFS 146
Query: 288 KLVQLSELELSHNFLGREIPSQICSMECCEVFCTITNSVPTNNFLNCQ 335
L L L+LS N + + I C + N L+
Sbjct: 147 NLTNLEHLDLSSNKI-QSIY--------CTDLRVLHQMPLLNLSLDLS 185
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
L NL L L L L PT +L SL L + NQ + S+P + L+SL+ ++L
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLH 526
Query: 60 ENNLSGSIP 68
N S P
Sbjct: 527 TNPWDCSCP 535
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 4e-33
Identities = 70/331 (21%), Positives = 118/331 (35%), Gaps = 31/331 (9%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
L L L NY+ + + L+ L L LG ++ NL +LR L L
Sbjct: 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81
Query: 60 ENNLSGSIPPSV--GNLMLTVLALENNHFT-GNLRHNICRN-GALERVIVGGNHFRG-PI 114
+ + + P G L L L + L+ RN AL R+ + N R +
Sbjct: 82 SSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140
Query: 115 PKCLRNCPNLVRISLEGNNMRGTISEAFG--IYLNLTFLDISDNNFFGEIASNWGKCPK- 171
+L I N + L+F ++ N+ + ++ +WGKC
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200
Query: 172 -----LSTLNVSMNNITRSIP------------LEIGNLSTLNEFDLSLNHIVGKIPKEF 214
L L+VS N T I + + ++I F
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260
Query: 215 GKL--NSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLD 272
L +S+ L L + +L L+ LNL+ N+ + + E+ L L L+
Sbjct: 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320
Query: 273 LSKYQFIQELPKE-LGKLVQLSELELSHNFL 302
LS Y + EL L +++ ++L N +
Sbjct: 321 LS-YNLLGELYSSNFYGLPKVAYIDLQKNHI 350
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-28
Identities = 75/357 (21%), Positives = 127/357 (35%), Gaps = 46/357 (12%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETW--NLKSLVKLGLGGNQFRG-SLPSSVGNLSSLRYLF 57
L +L EL L L+ + + + NLK+L +L L NQ R L S G L+SL+ +
Sbjct: 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154
Query: 58 LFENNLSGSIPPSV----GNLMLTVLALENNHFTGNL------RHNICRNGALERVIVGG 107
N + + L+ +L N + N RN LE + V G
Sbjct: 155 FSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213
Query: 108 NHFRGPIPKCLRNC------------PNLVRISLEGNNMRGTISEAFG--IYLNLTFLDI 153
N + I N +++ +N++ F ++ LD+
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273
Query: 154 SDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKE 213
S F + + L LN++ N I + L L +LS N +
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333
Query: 214 FGKLNSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFSSL--------IPESLGN 264
F L + + L+ N I + + L KL+ L+L N +++ I S
Sbjct: 334 FYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNK 392
Query: 265 LLKLHYLDLSKYQF------IQELPKE--LGKLVQLSELELSHNFLGREIPSQICSM 313
L+ L ++L+ ++ L L ++ L L L+ N Q S
Sbjct: 393 LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 6e-26
Identities = 63/314 (20%), Positives = 103/314 (32%), Gaps = 23/314 (7%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNL--SSLRYLFL 58
N + N ++ ++ G G + + ++ L SS+R+L L
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273
Query: 59 FENNLSGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPK 116
+ S+ V L VL L N L+ + + N
Sbjct: 274 SHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332
Query: 117 CLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLN 176
P + I L+ N++ + F L LD+ DN + P + +
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIF 387
Query: 177 VSMNNITRSIPLEIGNLSTLNEFDLSLNHIVG-KIPKEFGKLNSLTKLILRGNQLIGHLP 235
+S N + L NL+ N LS N + I ++ L LIL N+
Sbjct: 388 LSGNKLVT---LPKINLT-ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443
Query: 236 SEI-GSLTKLEFLNLSTNRF-----SSLIPESLGNLLKLHYLDLSKYQFIQELPKE-LGK 288
+ LE L L N + L + L L L L+ + ++ LP
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN-HNYLNSLPPGVFSH 502
Query: 289 LVQLSELELSHNFL 302
L L L L+ N L
Sbjct: 503 LTALRGLSLNSNRL 516
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 2e-25
Identities = 68/309 (22%), Positives = 116/309 (37%), Gaps = 26/309 (8%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
+++R L L ++ L LK L L L N+ + L +L+ L L N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Query: 62 NLSGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGPIPKCL 118
L + S G + + L+ NH ++ + L+ + + N +
Sbjct: 325 LLG-ELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNAL-----TTI 377
Query: 119 RNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFG-EIASNWGKCPKLSTLNV 177
P++ I L GN + + +S+N +I + P L L +
Sbjct: 378 HFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQILIL 433
Query: 178 SMNNITR-SIPLEIGNLSTLNEFDLSLNHIVGKIPKE-----FGKLNSLTKLILRGNQLI 231
+ N + S +L + L N + E F L+ L L L N L
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493
Query: 232 GHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQ 291
P LT L L+L++NR + L L L+ LD+S+ Q + ++ V
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLE--ILDISRNQ-LLAPNPDV--FVS 548
Query: 292 LSELELSHN 300
LS L+++HN
Sbjct: 549 LSVLDITHN 557
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 2e-24
Identities = 66/360 (18%), Positives = 118/360 (32%), Gaps = 56/360 (15%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNL--KSLVKLGLGGNQFRGSLPSSVGNLS------S 52
L +L+ + N + + E L K+L L N + G
Sbjct: 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205
Query: 53 LRYLFLFENNLSGSIPPSVGN----LMLTVLALENNHFTGNLRHNICR-----------N 97
L L + N + I + N L L ++ + +
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265
Query: 98 GALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNN 157
++ + + + +L ++L N + EAF NL L++S N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 158 FFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKL 217
+SN+ PK++ +++ N+I L L DL N + +
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFI 380
Query: 218 NSLTKLILRGNQL-------------------IGHLPSE--IGSLTKLEFLNLSTNRFSS 256
S+ + L GN+L + +L + + L+ L L+ NRFSS
Sbjct: 381 PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440
Query: 257 LIPESL-GNLLKLHYLDLS----KYQFIQELPKE-LGKLVQLSELELSHNFLGREIPSQI 310
+ L L L + + EL + L L L L+HN+L +P +
Sbjct: 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL-NSLPPGV 499
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 3e-14
Identities = 35/155 (22%), Positives = 52/155 (33%), Gaps = 15/155 (9%)
Query: 173 STLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIG 232
N+T +P L+T LS N+I F L L L L
Sbjct: 7 RIAFYRFCNLT-QVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62
Query: 233 HLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS--KYQFIQELPKELGKL 289
+ E +L L L+L +++ L P++ L L L L L
Sbjct: 63 TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122
Query: 290 VQLSELELSHNFLGREIPSQICSMECCEVFCTITN 324
L+ L+LS N QI S+ F + +
Sbjct: 123 KALTRLDLSKN--------QIRSLYLHPSFGKLNS 149
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 6e-09
Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 15/165 (9%)
Query: 1 NLTNLRELHLRDNYLTGLIPTET-WNLKSLVKLGLGGNQFRGSLPSSV-----GNLSSLR 54
+ +L+ L L N + +T SL +L LG N + + + + LS L+
Sbjct: 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483
Query: 55 YLFLFENNLSGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRG 112
L+L N L+ S+PP V L L+L +N T +++ N LE + + N
Sbjct: 484 VLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISRNQLLA 540
Query: 113 PIPKCLRNCPNLVRISLEGNNMRGTIS-EAFGIYLNLTFLDISDN 156
P P +L + + N F +LN T + I+
Sbjct: 541 PNP---DVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGP 582
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 7e-33
Identities = 63/327 (19%), Positives = 112/327 (34%), Gaps = 34/327 (10%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
LT+L EL ++ L +++ + L L ++ L LSS+RYL L +
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
NL+ S + ++ F G++ + N L+ + C N
Sbjct: 206 TNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264
Query: 121 --------------------CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFG 160
+ R+ + + +S + + + + + ++ F
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324
Query: 161 EIASNWGKCPKLSTLNVSMNNITRSI---PLEIGNLSTLNEFDLSLNHI--VGKIPKEFG 215
S L L++S N + G +L LS NH+ + K +
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 216 KLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSK 275
L +LT L + N +P K+ FLNLS+ + L LD+S
Sbjct: 385 TLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVV---KTCIPQTLEVLDVS- 439
Query: 276 YQFIQELPKELGKLVQLSELELSHNFL 302
+ L +L EL +S N L
Sbjct: 440 NNNLDSFSLFL---PRLQELYISRNKL 463
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 9e-30
Identities = 58/341 (17%), Positives = 122/341 (35%), Gaps = 29/341 (8%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRG-SLPSSVGNLSSLRYLFL- 58
+L +L L L DN+L+ L + L SL L L GN ++ + S NL++L+ L +
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131
Query: 59 FENNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKC 117
S L L L ++ ++ + + + + +
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGI--------YLNLTFLDISDNNFFG--EIASNWG 167
++ + L N+ + L ++D +F ++
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251
Query: 168 KCPKLSTLNVSMNNITRSIPLEIGNLS--------TLNEFDLSLNHIVGKIPKEFGKLNS 219
+ ++ + ++N + P E +S T+ + ++ + + L
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311
Query: 220 LTKLILRGNQLIGHLPSEIGS-LTKLEFLNLSTNRFSSLIPES---LGNLLKLHYLDLS- 274
+ ++ + ++ + +P L LEFL+LS N ++ G L L LS
Sbjct: 312 VKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370
Query: 275 -KYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSME 314
+ +Q+ + L L L+ L++S N +P E
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPE 410
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 1e-29
Identities = 67/327 (20%), Positives = 120/327 (36%), Gaps = 26/327 (7%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
NL+ L L+ + + + ++L SL L L N SL SS G LSSL+YL L
Sbjct: 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLM 106
Query: 60 ENNLSG-SIPPSVGNL-MLTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGPIPK 116
N + NL L L + N +R +L + + R +
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166
Query: 117 CLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLN 176
L++ ++ ++L + + I ++ +L++ D N S S +
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226
Query: 177 VSMNNITR----------SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLN-------- 218
+ + I LS + D +LN + P E ++
Sbjct: 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286
Query: 219 SLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQF 278
++ +L + L L + L K++ + + ++ + +L L +LDLS+
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346
Query: 279 IQELPKE---LGKLVQLSELELSHNFL 302
++E K G L L LS N L
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHL 373
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 9e-26
Identities = 56/331 (16%), Positives = 113/331 (34%), Gaps = 25/331 (7%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
++ L L N +T + + +L L L ++ + +L SL +L L +N
Sbjct: 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 62 NLSGSIPPSV-GNLM-LTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGPIPK-C 117
+LS S+ S G L L L L N + ++ N L+ + +G I +
Sbjct: 85 HLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177
+L + ++ ++R S++ ++ L + + + + L +
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203
Query: 178 SMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLIL----------RG 227
N+ R + + + F +L L + IL
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263
Query: 228 NQLIGHLPSEIGSLTKLEF--------LNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFI 279
N L PSE +++L L++ + L K+ + + + +
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-V 322
Query: 280 QELPKELGK-LVQLSELELSHNFLGREIPSQ 309
+P + L L L+LS N + E
Sbjct: 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 5e-24
Identities = 52/278 (18%), Positives = 88/278 (31%), Gaps = 36/278 (12%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+ T + + ++ +L + L + L ++ + +
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319
Query: 61 NNLSGSIPPSVGNLM--LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCL 118
+ + +P S + L L L N N C
Sbjct: 320 SKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKN---------------------SACK 357
Query: 119 RNCPNLVRISLEGNNMR--GTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLN 176
P+L + L N++R E NLT LDIS N F + + K+ LN
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLN 416
Query: 177 VSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPS 236
+S I + I TL D+S N++ L L +L + N+L LP
Sbjct: 417 LSSTGIR-VVKTCI--PQTLEVLDVSNNNL-DSFSLF---LPRLQELYISRNKLK-TLPD 468
Query: 237 EIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
L + +S N+ S+ L L + L
Sbjct: 469 A-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 4e-21
Identities = 54/258 (20%), Positives = 96/258 (37%), Gaps = 36/258 (13%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+R LH+ YL + T L+ + ++ + ++ S +L SL +L L E
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFR--GPIPKCL 118
N + L+N+ G L+ +++ NH R + L
Sbjct: 344 NLMVE-------------EYLKNSACKGAWPS-------LQTLVLSQNHLRSMQKTGEIL 383
Query: 119 RNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIAS-NWGKCPKLSTLNV 177
NL + + N + ++ + FL++S I L L+V
Sbjct: 384 LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG----IRVVKTCIPQTLEVLDV 438
Query: 178 SMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSE 237
S NN+ S L + L L +S N + +P + L + + NQ + +P
Sbjct: 439 SNNNLD-SFSLFLPRLQEL---YISRNKLK-TLP-DASLFPVLLVMKISRNQ-LKSVPDG 491
Query: 238 I-GSLTKLEFLNLSTNRF 254
I LT L+ + L TN +
Sbjct: 492 IFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 2e-17
Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 8/144 (5%)
Query: 169 CPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGN 228
C + + T SIP + + + DLS N I + +L LIL+ +
Sbjct: 4 CDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60
Query: 229 QLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPK--E 285
+ I + + SL LE L+LS N SSL G L L YL+L Q L
Sbjct: 61 R-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM-GNPYQTLGVTSL 118
Query: 286 LGKLVQLSELELSHNFLGREIPSQ 309
L L L + + EI
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRI 142
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 9e-33
Identities = 62/294 (21%), Positives = 103/294 (35%), Gaps = 77/294 (26%)
Query: 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFF--AEIEALTKIRHRNIVK 485
IG GR+G V+ + ++ AVK F + ++ +F EI +RH NI+
Sbjct: 44 QIGKGRYGEVWMGKWRGEKV-AVKVFFTT-------EEASWFRETEIYQTVLMRHENILG 95
Query: 486 FYGFCSHARHSI----LIYEYLKRGSLATNLSN-------------DAA-------AEEL 521
F S LI +Y + GSL L + + E
Sbjct: 96 FIAADIKGTGSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIF 155
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW----SALVGTYRYVAP 566
D+ SKN+L+ ++D G+A D++ + VGT RY+ P
Sbjct: 156 STQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPP 215
Query: 567 ------------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSI-LPSPSVINMR--LDEM 611
D+YSF ++ EV + G V LP ++ ++M
Sbjct: 216 EVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDM 275
Query: 612 LD--------PRLPPPSPDVQG--KLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ P P + ++ +M C +P SR T + + L
Sbjct: 276 REIVCIKKLRPSFPNRWSSDECLRQMGKLMT---ECWAHNPASRLTALRVKKTL 326
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 1e-32
Identities = 65/294 (22%), Positives = 108/294 (36%), Gaps = 77/294 (26%)
Query: 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIE--ALTKIRHRNIVK 485
IG GR G V+R + +E AVK F+S +++ +F E E +RH NI+
Sbjct: 49 SIGKGRFGEVWRGKWRGEEV-AVKIFSSR-------EERSWFREAEIYQTVMLRHENILG 100
Query: 486 FYGFCSHARHSI----LIYEYLKRGSL-------------ATNLSNDAA-------AEEL 521
F + + L+ +Y + GSL L+ A E +
Sbjct: 101 FIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIV 160
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSS----NWSALVGTYRYVAP 566
D+ SKN+L+ ++D G+A + + VGT RY+AP
Sbjct: 161 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAP 220
Query: 567 ------------DYRKKCDVYSFRVLALEVIKGKHPRGFVSS--------ILPSPSVINM 606
+ K+ D+Y+ ++ E+ + G + PSV M
Sbjct: 221 EVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEM 280
Query: 607 R---LDEMLDPRLPP--PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
R ++ L P +P S + + IM C + +R T I + L
Sbjct: 281 RKVVCEQKLRPNIPNRWQSCEALRVMAKIMR---ECWYANGAARLTALRIKKTL 331
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 6e-30
Identities = 65/302 (21%), Positives = 106/302 (35%), Gaps = 32/302 (10%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L L L ++ +T + E L L KL N +L + ++L YL
Sbjct: 40 QLATLTSLDCHNSSITDMTGIE--KLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDS 94
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N L+ ++ + LT L + N T ++ +N L + N I + +
Sbjct: 95 NKLT-NLDVT-PLTKLTYLNCDTNKLTK---LDVSQNPLLTYLNCARNTLT-EID--VSH 146
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
L + N LT LD S N + + L+ LN N
Sbjct: 147 NTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKI---TELDVSQNKLLNRLNCDTN 201
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240
NIT+ L++ L D S N + +I L LT N L L + +
Sbjct: 202 NITK---LDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELD--VST 252
Query: 241 LTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN 300
L+KL L+ + L + +L Y + I+EL ++ QL L+
Sbjct: 253 LSKLTTLHCIQTDLLEI---DLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAA 307
Query: 301 FL 302
+
Sbjct: 308 GI 309
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-28
Identities = 54/302 (17%), Positives = 97/302 (32%), Gaps = 32/302 (10%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
LT L L+ N LT L + L L N + V + + L L
Sbjct: 104 PLTKLTYLNCDTNKLTKLDVS---QNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHL 157
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N + LT L N T ++ +N L R+ N+ + L
Sbjct: 158 NKKI-TKLDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITK-LD--LNQ 210
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
L + N + I LT+ D S N + KL+TL+
Sbjct: 211 NIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPL---TELDVSTLSKLTTLHCIQT 264
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240
++ +++ + + L F + ++ + L L + + ++
Sbjct: 265 DLLE---IDLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT---ELDLSQ 316
Query: 241 LTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN 300
KL +L L+ + L + + KL L IQ+ +GK+ L+ +
Sbjct: 317 NPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAH-IQDFS-SVGKIPALNNNFEAEG 371
Query: 301 FL 302
Sbjct: 372 QT 373
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-28
Identities = 68/302 (22%), Positives = 105/302 (34%), Gaps = 33/302 (10%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
TNL L N LT L T L L L N+ L S L YL
Sbjct: 83 QNTNLTYLACDSNKLTNLDVT---PLTKLTYLNCDTNKLT-KLDVS--QNPLLTYLNCAR 136
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N L+ I S N LT L N L ++ L + N + +
Sbjct: 137 NTLT-EIDVS-HNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQ 189
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
L R++ + NN+ + + LTFLD S N + +L+ + S+N
Sbjct: 190 NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKL---TEIDVTPLTQLTYFDCSVN 243
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240
+T L++ LS L ++ +I L G + I L ++
Sbjct: 244 PLTE---LDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKEL--DVTH 295
Query: 241 LTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN 300
T+L L+ + L L KL YL L+ + + EL + +L L +
Sbjct: 296 NTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNA 349
Query: 301 FL 302
+
Sbjct: 350 HI 351
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 5e-18
Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 16/181 (8%)
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNN 181
N M+ T + + LT LD +++ + K L+ L + NN
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNN 75
Query: 182 ITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSL 241
IT L++ + L N + + L LT L N+L ++
Sbjct: 76 ITT---LDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT---KLDVSQN 126
Query: 242 TKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNF 301
L +LN + N + + + + +L LD + I +L + QL+ L+ S N
Sbjct: 127 PLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181
Query: 302 L 302
+
Sbjct: 182 I 182
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-28
Identities = 78/319 (24%), Positives = 123/319 (38%), Gaps = 33/319 (10%)
Query: 1 NLTNLRELHLRDNYLTGL-IPTETW-NLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLF 57
L NL L L L G + + L SL L L N + P+S N+ L
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160
Query: 58 LFENNLSGSIPPSV----GNLMLTVLALENNH--------FTGNLRHNICRNGALERVIV 105
L N + SI T+L L + N +N ++ + +
Sbjct: 161 LTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219
Query: 106 GGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN 165
GN F+ + K + +I + + +FG + F D + F G AS
Sbjct: 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG---HTNFKDPDNFTFKGLEASG 276
Query: 166 WGKCPKLSTLNVSMNNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKE-FGKLNSLTKL 223
+ T ++S + I ++ + + + L + L+ N I KI F L L KL
Sbjct: 277 ------VKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL 328
Query: 224 ILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQEL 282
L N L G + S + +L KLE L+LS N +L +S L L L L Q ++ +
Sbjct: 329 NLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSV 386
Query: 283 PKE-LGKLVQLSELELSHN 300
P +L L ++ L N
Sbjct: 387 PDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 4e-26
Identities = 66/341 (19%), Positives = 117/341 (34%), Gaps = 37/341 (10%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFEN 61
++ + L N + L T L+ L L + + ++ LSSL L L N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 62 NLSGSIPPSV-GNLM-LTVLALENNHFTG-NLRHNICRN-GALERVIVGGNHFRGPIPKC 117
+ L L VL L + G L N + +LE +++ N+ + P
Sbjct: 90 QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 118 L-RNCPNLVRISLEGNNMRGTISEAFG-------IYLNL---TFLDISDNNFFGEIASNW 166
N + L N ++ E L L T D+++ E N
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208
Query: 167 GKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEF-------------DLSLNHIVGKIPKE 213
K ++TL++S N S+ + + +
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268
Query: 214 FGKL--NSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHY 270
F L + + L ++ I L + T LE L L+ N + + + L L
Sbjct: 269 FKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327
Query: 271 LDLSKYQFIQELPKEL-GKLVQLSELELSHNFLGREIPSQI 310
L+LS+ + + + L +L L+LS+N + R + Q
Sbjct: 328 LNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHI-RALGDQS 366
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 5e-26
Identities = 74/352 (21%), Positives = 112/352 (31%), Gaps = 61/352 (17%)
Query: 1 NLTNLRELHLRDNYLTGLIPTET-WNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFL 58
L +L+ L + +I T L SL+ L L NQF L + L++L L L
Sbjct: 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTL 110
Query: 59 FENNL-SGSIPPSV----GNLM-----------------------LTVLALENNHFT--- 87
+ NL + + +L VL L N
Sbjct: 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170
Query: 88 -------GNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISE 140
+ R ++ + ++ + L GN + ++++
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230
Query: 141 AFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNL--STLNE 198
F + T +I S + N L S +
Sbjct: 231 RFFDAIAGT-----------KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279
Query: 199 FDLSLNHIVGKIPKE-FGKLNSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFSS 256
DLS + I + K F L +L L N+ I + LT L LNLS N S
Sbjct: 280 CDLSKSKI-FALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGS 337
Query: 257 LIPESLGNLLKLHYLDLSKYQFIQELPKEL-GKLVQLSELELSHNFLGREIP 307
+ NL KL LDLS I+ L + L L EL L N L + +P
Sbjct: 338 IDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQL-KSVP 387
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 1e-19
Identities = 68/285 (23%), Positives = 104/285 (36%), Gaps = 35/285 (12%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETW-NLKSLVKLGLGGNQFRGSLPSSVGNLSS--LRYLF 57
LT+L L LRDN + + P + N++ L L N+ + + N L
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186
Query: 58 LFENNLS-------GSIPPSV--GNLMLTVLALENNHFTG-------------NLRHNIC 95
L L G N +T L L N F ++ I
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246
Query: 96 RNGALERVIVGGNHFRGPIPKCLRN--CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDI 153
N G +F+ P + + L + + + F + +L L +
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306
Query: 154 SDNNFFGEIASN-WGKCPKLSTLNVSMNNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIP 211
+ N +I N + L LN+S N + SI + NL L DLS NHI +
Sbjct: 307 AQNEI-NKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHI-RALG 363
Query: 212 KE-FGKLNSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRF 254
+ F L +L +L L NQL +P I LT L+ + L TN +
Sbjct: 364 DQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 4e-17
Identities = 42/239 (17%), Positives = 80/239 (33%), Gaps = 24/239 (10%)
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN-WGKCPKLSTLNVSMN 180
++ + L N++ +F +L FL + I +N + L L + N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 181 NITRSIPLEI-GNLSTLNEFDLSLNHI-VGKIPKE-FGKLNSLTKLILRGNQLIGHLPSE 237
+ L+ L L+ ++ + F L SL L+LR N + P+
Sbjct: 90 QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 238 I-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLH----------YLDLSKYQFIQELPKEL 286
++ + L+L+ N+ S+ E L N H D+++Y E
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208
Query: 287 GKLVQLSELELSHNFLGREIPSQICS--------MECCEVFCTITNSVPTNNFLNCQKG 337
K ++ L+LS N + + + +S NF +
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 64/310 (20%), Positives = 103/310 (33%), Gaps = 66/310 (21%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
+ L L++N +T + + NLK+L L L N+ P + L L L+L +N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 63 LSGSIPPSV-GNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPK-CLRN 120
L +P + L L + N T + K
Sbjct: 112 LK-ELPEKMPKT--LQELRVHENEITK-------------------------VRKSVFNG 143
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
++ + L N L I + F G KLS + ++
Sbjct: 144 LNQMIVVELGTN--------------PLKSSGIENGAFQG--------MKKLSYIRIADT 181
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKE-FGKLNSLTKLILRGNQLIGHLPSEIG 239
NIT +IP G +L E L N I K+ LN+L KL L N + +
Sbjct: 182 NIT-TIPQ--GLPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKE-------LGKLVQL 292
+ L L+L+ N+ +P L + + + L I + K
Sbjct: 238 NTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASY 295
Query: 293 SELELSHNFL 302
S + L N +
Sbjct: 296 SGVSLFSNPV 305
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 9e-26
Identities = 55/287 (19%), Positives = 100/287 (34%), Gaps = 42/287 (14%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
NL NL L L +N ++ + P L L +L L NQ + LP + +L+ L + E
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHE 130
Query: 61 NNLSGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCL 118
N ++ + SV G + V+ L N + +E
Sbjct: 131 NEIT-KVRKSVFNGLNQMIVVELGTNPLK---------SSGIE-------------NGAF 167
Query: 119 RNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN-WGKCPKLSTLNV 177
+ L I + N+ +LT L + N ++ + L+ L +
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNK-ITKVDAASLKGLNNLAKLGL 223
Query: 178 SMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL------I 231
S N+I+ + N L E L+ N +V K+P + + L N +
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282
Query: 232 GHLPSEIGSLTKLEFLNLSTN--RFSSLIPESLGNLLKLHYLDLSKY 276
P ++L +N ++ + P + + + L Y
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 7e-22
Identities = 48/265 (18%), Positives = 90/265 (33%), Gaps = 44/265 (16%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L L L+L N L +P + K+L +L + N+ S L+ + + L
Sbjct: 98 PLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154
Query: 61 NNL-SGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKC 117
N L S I G L+ + + + + T IP+
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITT-------------------------IPQG 189
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN-WGKCPKLSTLN 176
L P+L + L+GN + + + NL L +S N+ + + P L L+
Sbjct: 190 L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELH 246
Query: 177 VSMNNITRSIPLEIGNLSTLNEFDLSLNHI------VGKIPKEFGKLNSLTKLILRGNQL 230
++ N + +P + + + L N+I P K S + + L N +
Sbjct: 247 LNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305
Query: 231 -IGHLPSEI-GSLTKLEFLNLSTNR 253
+ + + L +
Sbjct: 306 QYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 3e-13
Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 8/142 (5%)
Query: 170 PKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQ 229
P + L++ N IT + NL L+ L N I P F L L +L L NQ
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 230 LIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELG-- 287
L LP L+ L + N + + L ++ ++L ++ E G
Sbjct: 112 L-KELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAF 167
Query: 288 -KLVQLSELELSHNFLGREIPS 308
+ +LS + ++ + IP
Sbjct: 168 QGMKKLSYIRIADTNI-TTIPQ 188
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 8e-13
Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 14/163 (8%)
Query: 143 GIYLNLTFLDISDNNFFGEIASNW-GKCPKLSTLNVSMNNITRSIPLEI-GNLSTLNEFD 200
+ + LD+ NN EI L TL + N I+ I L L
Sbjct: 49 DLPPDTALLDLQ-NNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY 106
Query: 201 LSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFSS--L 257
LS N + ++P++ +L +L + N+ I + + L ++ + L TN S +
Sbjct: 107 LSKNQLK-ELPEKM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162
Query: 258 IPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN 300
+ + KL Y+ ++ I +P+ L L+EL L N
Sbjct: 163 ENGAFQGMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGN 202
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 3e-26
Identities = 66/311 (21%), Positives = 107/311 (34%), Gaps = 69/311 (22%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
+ L L++N ++ L + L+ L L L N+ + L L+ L++ +N+
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 63 LSGSIPPSV-GNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPK-CLRN 120
L IPP++ + L L + +N +PK
Sbjct: 114 LV-EIPPNLPSS--LVELRIHDNRIRK-------------------------VPKGVFSG 145
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
N+ I + GN L F G KL+ L +S
Sbjct: 146 LRNMNCIEMGGN--------------PLENSGFEPGAFDG---------LKLNYLRISEA 182
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKE-FGKLNSLTKLILRGNQLIGHLPSEI- 238
+T IP TLNE L N I I E + + L +L L NQ I + +
Sbjct: 183 KLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ-IRMIENGSL 237
Query: 239 GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKE-------LGKLVQ 291
L L L+L N+ S +P L +L L + L I ++ K
Sbjct: 238 SFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAY 295
Query: 292 LSELELSHNFL 302
+ + L +N +
Sbjct: 296 YNGISLFNNPV 306
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 51/289 (17%), Positives = 89/289 (30%), Gaps = 45/289 (15%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L +L L L +N ++ + L+ L KL + N +P ++ SSL L + +
Sbjct: 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHD 132
Query: 61 NNLSGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCL 118
N + +P V G + + + N LE F G
Sbjct: 133 NRIR-KVPKGVFSGLRNMNCIEMGGNP--------------LENSGFEPGAFDG------ 171
Query: 119 RNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN-WGKCPKLSTLNV 177
L + + + G + L L + N I + KL L +
Sbjct: 172 ---LKLNYLRISEAKLTGIPKDLPE---TLNELHLDHNK-IQAIELEDLLRYSKLYRLGL 224
Query: 178 SMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSE 237
N I + L TL E L N + ++P L L + L N I +
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVGVN 282
Query: 238 I-------GSLTKLEFLNLSTNR--FSSLIPESLGNLLKLHYLDLSKYQ 277
++L N + + P + + + Y+
Sbjct: 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query: 200 DLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIP 259
DL L + +I T L L+ N + + L L L L N+ S +
Sbjct: 42 DLGLKAVPKEISP------DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE 95
Query: 260 ESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPS 308
++ L KL L +SK + E+P L L EL + N + R++P
Sbjct: 96 KAFSPLRKLQKLYISKNH-LVEIPPNL--PSSLVELRIHDNRI-RKVPK 140
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 1e-25
Identities = 52/314 (16%), Positives = 96/314 (30%), Gaps = 56/314 (17%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
N L+ + +L L SLP ++ + L + +
Sbjct: 35 KWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQ 89
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N L S+P +L L +N + +P+ +
Sbjct: 90 NALI-SLPELPASL--EYLDACDNRLST-------------------------LPELPAS 121
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
+L ++ N + + E L +++ NN + L L+V N
Sbjct: 122 LKHL---DVDNNQLT-MLPELPA---LLEYINAD-NNQLTMLPE---LPTSLEVLSVRNN 170
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTK----LILRGNQLIGHLPS 236
+T +P +L L D+S N + +P + + + R N+ I H+P
Sbjct: 171 QLT-FLPELPESLEAL---DVSTNLLES-LPAVPVRNHHSEETEIFFRCRENR-ITHIPE 224
Query: 237 EIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELE 296
I SL + L N SS I ESL + F ++ + +
Sbjct: 225 NILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ--NTLHRPLAD 282
Query: 297 LSHNFLGREIPSQI 310
+ S +
Sbjct: 283 AVTAWFPENKQSDV 296
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-25
Identities = 66/275 (24%), Positives = 96/275 (34%), Gaps = 54/275 (19%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
+N R L+L +N + + +L L L LG N R + L+SL L LF+N
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 63 LSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCP 122
L+ IP
Sbjct: 135 LT-VIPSGA----------------------------------------------FEYLS 147
Query: 123 NLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN-WGKCPKLSTLNVSMNN 181
L + L N + S AF +L LD+ + I+ + L LN+ M N
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207
Query: 182 ITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKE-FGKLNSLTKLILRGNQLIGHLPSE-IG 239
I +P + L L E ++S NH +I F L+SL KL + +Q + +
Sbjct: 208 IK-DMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFD 263
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
L L LNL+ N SSL + L L L L
Sbjct: 264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 4e-19
Identities = 55/216 (25%), Positives = 86/216 (39%), Gaps = 12/216 (5%)
Query: 100 LERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFF 159
+ + N+ + R+ +L + L N++R AF +L L++ DN
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL- 135
Query: 160 GEIASNW-GKCPKLSTLNVSMNNITRSIPLEI-GNLSTLNEFDLS-LNHIVGKIPKE-FG 215
I S KL L + N I SIP + +L DL L + I + F
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFE 193
Query: 216 KLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSK 275
L +L L L + +P+ + L LE L +S N F + P S L L L +
Sbjct: 194 GLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 276 YQFIQELPKE-LGKLVQLSELELSHNFLGREIPSQI 310
Q + + + L L EL L+HN L +P +
Sbjct: 252 SQ-VSLIERNAFDGLASLVELNLAHNNL-SSLPHDL 285
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 5e-18
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 10/170 (5%)
Query: 143 GIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEI-GNLSTLNEFDL 201
GI N +L++ +NN A + L L + N+I I + L++LN +L
Sbjct: 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL 130
Query: 202 SLNHIVGKIPKE-FGKLNSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLS-TNRFSSLI 258
N + IP F L+ L +L LR N I +PS + L L+L + +
Sbjct: 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYIS 188
Query: 259 PESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPS 308
+ L L YL+L I+++P L LV L ELE+S N EI
Sbjct: 189 EGAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELEMSGNHF-PEIRP 235
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 5e-16
Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 8/161 (4%)
Query: 1 NLTNLRELHLRDNYLTGLIPTET-WNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFL 58
L +L L L DN+LT +IP+ L L +L L N S+PS + SL L L
Sbjct: 121 GLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDL 178
Query: 59 FENNLSGSIPPSV-GNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPK 116
E I L L L L + ++ N+ LE + + GNHF P
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DM-PNLTPLVGLEELEMSGNHFPEIRPG 236
Query: 117 CLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNN 157
+L ++ + + + AF +L L+++ NN
Sbjct: 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 219 SLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQF 278
+ L L N + L LE L L N + + L L+ L+L
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW- 134
Query: 279 IQELPKE-LGKLVQLSELELSHNFLGREIPSQI 310
+ +P L +L EL L +N + IPS
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYA 166
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 8e-05
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
L++L++L + ++ ++ + L SLV+L L N SLP + L L L L
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLH 298
Query: 60 ENNL 63
N
Sbjct: 299 HNPW 302
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 4e-25
Identities = 67/276 (24%), Positives = 100/276 (36%), Gaps = 56/276 (20%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
TN R L+L +N + + +L+ L L L N R + L++L L LF+N
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 63 LSGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
L+ +IP L L L NN ++
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIE-----------SIP-------------SYAFNR 158
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
P+L R+ L +S IS+ F G L LN++M
Sbjct: 159 IPSLRRLDLGELKR---LSY------------ISEGAFEG--------LSNLRYLNLAMC 195
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKE-FGKLNSLTKLILRGNQLIGHLPSE-I 238
N+ IP + L L+E DLS NH+ I F L L KL + +Q I +
Sbjct: 196 NLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAF 251
Query: 239 GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
+L L +NL+ N + L + L L + L
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 6e-20
Identities = 56/201 (27%), Positives = 87/201 (43%), Gaps = 11/201 (5%)
Query: 107 GNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNW 166
N + ++ +L + L N++R AF NL L++ DN I +
Sbjct: 73 ENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL-TTIPNGA 131
Query: 167 -GKCPKLSTLNVSMNNITRSIPLEI-GNLSTLNEFDLS-LNHIVGKIPKE-FGKLNSLTK 222
KL L + N I SIP + +L DL L + I + F L++L
Sbjct: 132 FVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRY 189
Query: 223 LILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQEL 282
L L L +P+ + L KL+ L+LS N S++ P S L+ L L + + Q IQ +
Sbjct: 190 LNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVI 246
Query: 283 PKE-LGKLVQLSELELSHNFL 302
+ L L E+ L+HN L
Sbjct: 247 ERNAFDNLQSLVEINLAHNNL 267
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 1e-17
Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 4/141 (2%)
Query: 170 PKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQ 229
LN+ N I +L L LS NHI F L +L L L N+
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 230 LIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKE-LG 287
+ +P+ L+KL+ L L N S+ + + L LDL + + + + +
Sbjct: 124 -LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182
Query: 288 KLVQLSELELSHNFLGREIPS 308
L L L L+ L REIP+
Sbjct: 183 GLSNLRYLNLAMCNL-REIPN 202
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 2e-15
Identities = 42/161 (26%), Positives = 63/161 (39%), Gaps = 8/161 (4%)
Query: 1 NLTNLRELHLRDNYLTGLIPTET-WNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFL 58
L NL L L DN LT IP L L +L L N S+PS + SLR L L
Sbjct: 110 GLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDL 167
Query: 59 FENNLSGSIPPSV-GNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPK 116
E I L L L L + N+ L+ + + GNH P
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPG 225
Query: 117 CLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNN 157
+ +L ++ + + ++ AF +L ++++ NN
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L L EL L N+L+ + P L L KL + +Q + ++ NL SL + L
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264
Query: 61 NNLSGSIPPSVGNLM--LTVLALENN 84
NNL+ +P + + L + L +N
Sbjct: 265 NNLT-LLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
L +L++L + + + + NL+SLV++ L N LP + L L + L
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLH 287
Query: 60 ENNL 63
N
Sbjct: 288 HNPW 291
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 66/267 (24%), Positives = 97/267 (36%), Gaps = 37/267 (13%)
Query: 42 SLPSSVGNLSSLRYLFLFENNLSGSIPPSV-GNL-MLTVLALENNHFTGNLRHNICRNGA 99
S+P+ + SS L L N L S+P V L LT L+L +N +
Sbjct: 21 SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS------------ 65
Query: 100 LERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFF 159
F+G + +L + L N + T+S F L LD +N
Sbjct: 66 ----------FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 114
Query: 160 GEIASNW-GKCPKLSTLNVSMNNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKE-FGK 216
+ L L++S + I LS+L ++ N + F +
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173
Query: 217 LNSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSK 275
L +LT L L Q + L SL+ L+ LN+S N F SL L L LD S
Sbjct: 174 LRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232
Query: 276 YQFIQELPKEL--GKLVQLSELELSHN 300
I K+ L+ L L+ N
Sbjct: 233 NH-IMTSKKQELQHFPSSLAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 49/208 (23%), Positives = 83/208 (39%), Gaps = 7/208 (3%)
Query: 100 LERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNN--MRGTISEAFGIYLNLTFLDISDNN 157
R+ + N + L ++SL N +G S++ +L +LD+S N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 158 FFGEIASNWGKCPKLSTLNVSMNNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGK 216
++SN+ +L L+ +N+ + + +L L D+S H F
Sbjct: 90 V-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 217 LNSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSK 275
L+SL L + GN + +I L L FL+LS + L P + +L L L++S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 276 YQFIQELPKE-LGKLVQLSELELSHNFL 302
L L L L+ S N +
Sbjct: 209 NN-FFSLDTFPYKCLNSLQVLDYSLNHI 235
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 4e-23
Identities = 51/278 (18%), Positives = 94/278 (33%), Gaps = 55/278 (19%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQ--FRGSLPSSVGNLSSLRYLFLFE 60
++ L L N L L L L KL L N F+G S +SL+YL L
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 61 NNLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
N + ++ + L L L ++++ +
Sbjct: 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLK-----QMSEFSV------------------FL 123
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN-WGKCPKLSTLNVS 178
+ NL+ + + + R + F +L L ++ N+F + + + L+ L++S
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 179 MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI 238
+ + P F L+SL L + N L +
Sbjct: 184 QCQLE-QLS-----------------------PTAFNSLSSLQVLNMSHNN-FFSLDTFP 218
Query: 239 -GSLTKLEFLNLSTNRFSSLIPESLGNLLK-LHYLDLS 274
L L+ L+ S N + + L + L +L+L+
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 1e-20
Identities = 34/172 (19%), Positives = 65/172 (37%), Gaps = 10/172 (5%)
Query: 143 GIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIG---NLSTLNEF 199
GI + T L++ N + K +L+ L++S N ++ ++L
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYL 83
Query: 200 DLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSE--IGSLTKLEFLNLSTNRFSSL 257
DLS N ++ + F L L L + + + + SL L +L++S
Sbjct: 84 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVA 141
Query: 258 IPESLGNLLKLHYLDLSKYQFIQELPKE-LGKLVQLSELELSHNFLGREIPS 308
L L L ++ F + + +L L+ L+LS L ++
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSP 192
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 45/234 (19%), Positives = 73/234 (31%), Gaps = 53/234 (22%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
T+L+ L L N + + + L+ L L + + SV +L +L YL +
Sbjct: 76 GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134
Query: 60 ENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
+ +
Sbjct: 135 HTHTR-VAFNGI----------------------------------------------FN 147
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYL-NLTFLDISDNNFFGEIASNWGKC-PKLSTLNV 177
+L + + GN+ + L NLTFLD+S +++ L LN+
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNM 206
Query: 178 SMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKL-NSLTKLILRGNQL 230
S NN L++L D SLNHI+ +E +SL L L N
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 2e-24
Identities = 44/285 (15%), Positives = 85/285 (29%), Gaps = 40/285 (14%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFEN 61
++ L L +N +T + ++ +L L L N ++ +L SL +L L N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110
Query: 62 NLSGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
LS ++ S LT L L N + +
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYK-----TLGETSLF------------------S 146
Query: 120 NCPNLVRISLEGNNMRGTISE-AFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVS 178
+ L + + + I F L L+I ++ + +S L +
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206
Query: 179 MNNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKE--------FGKLNSLTKLILRGNQ 229
M + S++ +L + E K + + +
Sbjct: 207 MKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265
Query: 230 LIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
L + + ++ L L S N+ S+ L L + L
Sbjct: 266 LF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 2e-22
Identities = 48/260 (18%), Positives = 93/260 (35%), Gaps = 26/260 (10%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
NL+ L L N + + +L SL L L N +L SS LSSL +L L
Sbjct: 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLL 132
Query: 60 ENNLSGSIPPS---VGNLMLTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGPIP 115
N ++ + L +L + N ++ LE + + + + P
Sbjct: 133 GNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191
Query: 116 KCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTL 175
K L++ N+ + L + + ++ L++ D +
Sbjct: 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL----------------D 235
Query: 176 NVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLP 235
+ ++ + T ++ + ++ K +++ L +L NQL +P
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VP 293
Query: 236 SEI-GSLTKLEFLNLSTNRF 254
I LT L+ + L TN +
Sbjct: 294 DGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 4e-18
Identities = 45/247 (18%), Positives = 82/247 (33%), Gaps = 24/247 (9%)
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNW-GKCPKLSTLNVSMN 180
+ + L N + + +NL L ++ N I + L L++S N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYN 110
Query: 181 NITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKE-FGKLNSLTKLILRGNQLIGHLPSEI 238
++ ++ LS+L +L N F L L L + + +
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169
Query: 239 -GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL-GKLVQLSELE 296
LT LE L + + S P+SL ++ + +L L Q L + + LE
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLE 228
Query: 297 LSHNFLGREIPSQICSMECCEVFCTITNSVPTNNFLNCQKGYACQKVVLTFQQFSTSAKI 356
L L S++ T + K + + V +T + K+
Sbjct: 229 LRDTDLDTFHFSEL----------------STGETNSLIKKFTFRNVKITDESLFQVMKL 272
Query: 357 CPNLSRL 363
+S L
Sbjct: 273 LNQISGL 279
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 6e-24
Identities = 64/352 (18%), Positives = 120/352 (34%), Gaps = 49/352 (13%)
Query: 1 NLTNLRELHLRDNYLTGLIPTE---------------------------TWNLKSLVKLG 33
N++ L+ L L +L +N +SL +
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172
Query: 34 LGGNQFRGSLPSSVGNLSSLRYLFLFEN-------NLSGSIPPSVGNLMLTVLALENNHF 86
+F L SV +++L + + N L+ L L N
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232
Query: 87 TGN--------LRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTI 138
T N + H ++ V + G + L + +
Sbjct: 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292
Query: 139 SEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNE 198
S + I+ N+ + + + K L+ S N +T ++ G+L+ L
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352
Query: 199 FDLSLNHI--VGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFS 255
L +N + + KI + ++ SL +L + N + L LN+S+N +
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412
Query: 256 SLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIP 307
I L ++ LDL + I+ +PK++ KL L EL ++ N L + +P
Sbjct: 413 DTIFRCL--PPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQL-KSVP 460
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 53/325 (16%), Positives = 105/325 (32%), Gaps = 29/325 (8%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETW-NLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLF 59
NL+ L L N L + + N+ L LGL S + +L+ + L +
Sbjct: 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVL 147
Query: 60 ENNLSGSIPP----SVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIP 115
P L ++ N F L ++ LE +
Sbjct: 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207
Query: 116 KCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTL 175
L L N L L ++ + N+F + W +
Sbjct: 208 YFLSILAKLQTNPKLSN-------------LTLNNIETTWNSFIRILQLVWHT--TVWYF 252
Query: 176 NVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKI-----PKEFGKLNSLTKLILRGNQL 230
++S + + + S + LS++ +V + + +++ +
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312
Query: 231 IGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELG--- 287
++ L+ S N + + E+ G+L +L L L Q ++EL K
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTT 371
Query: 288 KLVQLSELELSHNFLGREIPSQICS 312
++ L +L++S N + + CS
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCS 396
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 1e-18
Identities = 60/341 (17%), Positives = 113/341 (33%), Gaps = 42/341 (12%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFEN 61
L++ NY++ L ++ +L L L + N+ + L SV L YL L N
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN 79
Query: 62 NLSG--------------------SIPPS--VGNLM-LTVLALENNHFTGNLRHNICRNG 98
L ++P GN+ L L L H + I
Sbjct: 80 KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139
Query: 99 ALERVIVGGNHFRGPI-PKCLRNCP--NLVRISLEGNNMRGTISEAFGIYLNLTFLDISD 155
+ ++V G + P+ L++ +L + + + NL +I
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199
Query: 156 N------NFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNL---STLNEFDLSLNHI 206
++F I + PKLS L ++ T + + I L +T+ F +S +
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259
Query: 207 VGKIPKE-----FGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPES 261
G++ L +L+ + + + + N + + +
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319
Query: 262 LGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFL 302
+ +LD S + + G L +L L L N L
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 1e-17
Identities = 50/314 (15%), Positives = 94/314 (29%), Gaps = 41/314 (13%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
N +L + + ++ + +L + + L+ L+
Sbjct: 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223
Query: 61 N----------NLSGSIPPSVGNLMLTVLALENNHFTGNLRHNI--CRNGALERVI---V 105
N N I V + + ++ N G L +L+ + V
Sbjct: 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283
Query: 106 GGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN 165
+ F P N+ + + R LD S+N + N
Sbjct: 284 VSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFEN 343
Query: 166 WGKCPKLSTLNVSMNNITRSIPLEIG---NLSTLNEFDLSLNHIVGKIPKE-FGKLNSLT 221
G +L TL + MN + + + +L + D+S N + K SL
Sbjct: 344 CGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402
Query: 222 KLILRGNQL---------------------IGHLPSEIGSLTKLEFLNLSTNRFSSLIPE 260
L + N L I +P ++ L L+ LN+++N+ S+
Sbjct: 403 SLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG 462
Query: 261 SLGNLLKLHYLDLS 274
L L + L
Sbjct: 463 IFDRLTSLQKIWLH 476
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 2e-15
Identities = 56/262 (21%), Positives = 92/262 (35%), Gaps = 34/262 (12%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETW-----NLKSLVKLGLGGNQFRGSLPSSVGNLSSLRY 55
T + + + L G + + +LK+L + + F S++
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNI 304
Query: 56 LFLFENNLSGSIPPSVGNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPI 114
+ + L NN T + N LE +I+ N +
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK--- 361
Query: 115 PKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNF-FGEIASNWGKCPKLS 173
L I+E +L LDIS N+ + E + L
Sbjct: 362 -------------ELS------KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402
Query: 174 TLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGH 233
+LN+S N +T +I + + DL N I IPK+ KL +L +L + NQL
Sbjct: 403 SLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL-KS 458
Query: 234 LPSEI-GSLTKLEFLNLSTNRF 254
+P I LT L+ + L TN +
Sbjct: 459 VPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 1e-13
Identities = 37/172 (21%), Positives = 59/172 (34%), Gaps = 6/172 (3%)
Query: 143 GIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLS 202
+ T L+IS N S+ KL L +S N I L DLS
Sbjct: 18 DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77
Query: 203 LNHIVGKIPKEFGKLNSLTKLILRGNQLIG-HLPSEIGSLTKLEFLNLSTNRFSSLIPES 261
N + KI +L L L N + E G++++L+FL LST
Sbjct: 78 HNKL-VKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134
Query: 262 LGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSM 313
+ +L L + + ++ + L + L F + I +
Sbjct: 135 IAHLNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDV 184
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 11/144 (7%)
Query: 174 TLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGH 233
++ S N + +P ++ ++S N+I + L+ L LI+ N+ I +
Sbjct: 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQY 59
Query: 234 LPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELP--KELGKLV 290
L + +LE+L+LS N+ + S + L +LDLS F LP KE G +
Sbjct: 60 LDISVFKFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFNAF-DALPICKEFGNMS 115
Query: 291 QLSELELSHNFLGREIPSQICSME 314
QL L LS L + I +
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLN 139
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 1e-23
Identities = 61/302 (20%), Positives = 95/302 (31%), Gaps = 49/302 (16%)
Query: 8 LHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSS---VGNLSSLRYLFLFENNLS 64
L D T+ SL +L + + + V +S L+ L L ++
Sbjct: 49 LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108
Query: 65 GSIPPSVGNLM---LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNC 121
G+ PP + L +L L N + + + + L+
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDA------------------WLAELQQWLK-- 148
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNN 181
P L +S+ + E ++ L+ LD+SDN GE CP
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL---------- 198
Query: 182 ITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS- 240
+ L L + + G L L L N L +
Sbjct: 199 -------KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251
Query: 241 LTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN 300
++L LNLS + P+ L KL LDLS Y + P L Q+ L L N
Sbjct: 252 PSQLNSLNLSFTGLKQV-PKGLPA--KLSVLDLS-YNRLDRNPSPDE-LPQVGNLSLKGN 306
Query: 301 FL 302
Sbjct: 307 PF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 6e-16
Identities = 49/250 (19%), Positives = 86/250 (34%), Gaps = 23/250 (9%)
Query: 1 NLTNLRELHLRDNYLTGLIPT---ETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLF 57
+L+ L +R + I + L +L L + G+ P + +
Sbjct: 66 KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125
Query: 58 LFENNLSGSIPP-------SVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHF 110
L N+S + L VL++ H + AL + + N
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185
Query: 111 RGPIP----KCLRNCPNLVRISLEGNNMR---GTISEAFGIYLNLTFLDISDNNFFGEI- 162
G C P L ++L M G S + L LD+S N+
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
Query: 163 ASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTK 222
A + +L++LN+S + +P + + L+ DLS N + P +L +
Sbjct: 246 APSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR-NPS-PDELPQVGN 300
Query: 223 LILRGNQLIG 232
L L+GN +
Sbjct: 301 LSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 8e-13
Identities = 31/182 (17%), Positives = 52/182 (28%), Gaps = 15/182 (8%)
Query: 145 YLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLN 204
L + I FG + L L + +T + P + + + L+L
Sbjct: 72 RLTVRAARIPSRILFGALRVLGI--SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129
Query: 205 HIVGKIPKEF------GKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFS--- 255
++ + L L + + ++ L L+LS N
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189
Query: 256 ----SLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQIC 311
+L P L L + VQL L+LSHN L + C
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249
Query: 312 SM 313
Sbjct: 250 DW 251
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 56/269 (20%), Positives = 102/269 (37%), Gaps = 48/269 (17%)
Query: 420 INDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ +F + IG G+ VYRA L +A+KK D + + EI+ L ++
Sbjct: 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDA-KARADCIKEIDLLKQL 89
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL----------------- 521
H N++K+Y ++ E G L+ + + + L
Sbjct: 90 NHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSAL 149
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD--- 567
DI NV + + D G+ +F ++ +LVGT Y++P+
Sbjct: 150 EHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIH 209
Query: 568 ---YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP--SPD 622
Y K D++S L E+ + P F + S+ P LP S +
Sbjct: 210 ENGYNFKSDIWSLGCLLYEMAALQSP--FYGDKMNLYSLCKKIEQCDYPP-LPSDHYSEE 266
Query: 623 VQGKLISIMEVAFSCLDVSPESRPTMQTI 651
++ +L++ C++ PE RP + +
Sbjct: 267 LR-QLVN------MCINPDPEKRPDVTYV 288
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 4e-23
Identities = 58/301 (19%), Positives = 101/301 (33%), Gaps = 61/301 (20%)
Query: 387 ANREGQRSPQNSQGLLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRA-ELPSK 445
+ + + P+ +L+ K K E ++ + +G G G V+R + +
Sbjct: 24 SAKLQRLGPETEDNEGVLLTEKLKPVDYEYREEVHWMTHQPRVGRGSFGEVHRMKDKQTG 83
Query: 446 EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY-EYLK 504
AVKK + + E+ A + IV YG + I+ E L+
Sbjct: 84 FQCAVKKVRLEVFRVE---------ELVACAGLSSPRIVPLYGAVRE-GPWVNIFMELLE 133
Query: 505 RGSLATNLSNDAAAEEL------------------------DISSKNVLLDLE-HKAHVS 539
GSL + E D+ + NVLL + +A +
Sbjct: 134 GGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALC 193
Query: 540 DFGIAKFLKPDSSNWSA-----LVGTYRYVAP------DYRKKCDVYSFRVLALEVIKGK 588
DFG A L+PD S + GT ++AP K D++S + L ++ G
Sbjct: 194 DFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGC 253
Query: 589 HPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF--SCLDVSPESRP 646
HP + + + PPP ++ + + L P R
Sbjct: 254 HPW----TQYFRGPLC------LKIASEPPPIREIPPSC-APLTAQAIQEGLRKEPVHRA 302
Query: 647 T 647
+
Sbjct: 303 S 303
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 4e-23
Identities = 72/279 (25%), Positives = 112/279 (40%), Gaps = 62/279 (22%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + E +AVKK L ++F EIE L ++H NI
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKK----LQHSTEEHLRDFEREIEILKSLQHDNI 73
Query: 484 VKFYGFCSHA-RHSI-LIYEYLKRGSLATNLSNDAA---AEEL----------------- 521
VK+ G C A R ++ LI EYL GSL L +L
Sbjct: 74 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 133
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAP---DYRK 570
D++++N+L++ E++ + DFG+ K L D + + AP K
Sbjct: 134 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESK 193
Query: 571 ---KCDVYSFRVLALEVI----KGKHPRGFVSSIL---PSPSVINMRLDEMLDP--RLPP 618
DV+SF V+ E+ K K P ++ +I L E+L RLP
Sbjct: 194 FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR 253
Query: 619 PS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P PD ++ IM C + + RP+ + + ++
Sbjct: 254 PDGCPD---EIYMIMT---ECWNNNVNQRPSFRDLALRV 286
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 4e-23
Identities = 64/278 (23%), Positives = 99/278 (35%), Gaps = 61/278 (21%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + +AVK+ L Q++F EI+ L + I
Sbjct: 31 LGKGNFGSVELCRYDPLGDNTGALVAVKQ----LQHSGPDQQRDFQREIQILKALHSDFI 86
Query: 484 VKFYGFCSHARHS--ILIYEYLKRGSLATNLSNDAA---AEEL----------------- 521
VK+ G L+ EYL G L L A A L
Sbjct: 87 VKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSR 146
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAP---DYRK 570
D++++N+L++ E ++DFG+AK L D + + AP
Sbjct: 147 RCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNI 206
Query: 571 ---KCDVYSFRVLALEVI-KGKHP-----RGFVSSILPSPSVINMRLDEMLDP--RLPPP 619
+ DV+SF V+ E+ RL E+L+ RLP P
Sbjct: 207 FSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAP 266
Query: 620 S--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P ++ +M+ C SP+ RP+ + QL
Sbjct: 267 PACPA---EVHELMK---LCWAPSPQDRPSFSALGPQL 298
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 7e-23
Identities = 50/302 (16%), Positives = 95/302 (31%), Gaps = 43/302 (14%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L N ++ + +T + +L + L G ++ V L++L L L +
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKD 72
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N ++ + P +T L L N N+ +
Sbjct: 73 NQIT-DLAPLKNLTKITELELSGNPLK-----NV---------------------SAIAG 105
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
++ + L + T NL L + N S L L++
Sbjct: 106 LQSIKTLDLTSTQI--TDVTPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNA 161
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240
++ PL NLS L N I I L +L ++ L+ NQ+ S + +
Sbjct: 162 QVSDLTPLA--NLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDV--SPLAN 215
Query: 241 LTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN 300
+ L + L+ ++ NL+ + + I P + + L+ N
Sbjct: 216 TSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA--PATISDNGTYASPNLTWN 273
Query: 301 FL 302
Sbjct: 274 LT 275
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 8e-23
Identities = 67/264 (25%), Positives = 106/264 (40%), Gaps = 53/264 (20%)
Query: 429 IGSGRHGSVYRAELPSKEFL-AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V+ L + L AVK LP D +F E L + H NIV+
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLK---AKFLQEARILKQYSHPNIVRLI 178
Query: 488 GFCSHARHSILIYEYLKRGSLATNL---------------SNDAAA-----EEL-----D 522
G C+ + ++ E ++ G T L DAAA E D
Sbjct: 179 GVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRD 238
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT--YRYVAP---DYRK---KCDV 574
++++N L+ ++ +SDFG+++ S + ++ AP +Y + + DV
Sbjct: 239 LAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDV 298
Query: 575 YSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLISIM 631
+SF +L E G P P++ N + E ++ RLP P + +M
Sbjct: 299 WSFGILLWETFSLGA---------SPYPNLSNQQTREFVEKGGRLPCP-ELCPDAVFRLM 348
Query: 632 EVAFSCLDVSPESRPTMQTITQQL 655
E C P RP+ TI Q+L
Sbjct: 349 E---QCWAYEPGQRPSFSTIYQEL 369
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 8e-23
Identities = 55/275 (20%), Positives = 110/275 (40%), Gaps = 57/275 (20%)
Query: 420 INDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
D++ Y IG+G +G + + L K+ + ++ +++ +E+ L ++
Sbjct: 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEA--EKQMLVSEVNLLREL 62
Query: 479 RHRNIVKFYG-FCSHARHSILIY-EYLKRGSLATNLSNDAAAEEL--------------- 521
+H NIV++Y ++ I EY + G LA+ ++ +
Sbjct: 63 KHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTL 122
Query: 522 ------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRY 563
D+ NV LD + + DFG+A+ L D+S VGT Y
Sbjct: 123 ALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYY 182
Query: 564 VAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617
++P+ Y +K D++S L E+ P F + + ++ E R+P
Sbjct: 183 MSPEQMNRMSYNEKSDIWSLGCLLYELCALMPP--FTAFSQKE---LAGKIREGKFRRIP 237
Query: 618 PP-SPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
S ++ ++I+ L++ RP+++ I
Sbjct: 238 YRYSDELN-EIIT------RMLNLKDYHRPSVEEI 265
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 9e-23
Identities = 63/278 (22%), Positives = 101/278 (36%), Gaps = 60/278 (21%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G G V + E +AVK P + EIE L + H NI
Sbjct: 29 LGEGHFGKVELCRYDPEGDNTGEQVAVKSLK---PESGGNHIADLKKEIEILRNLYHENI 85
Query: 484 VKFYGFCSHARHS--ILIYEYLKRGSLATNLSNDAAA--------------------EEL 521
VK+ G C+ + LI E+L GSL L +
Sbjct: 86 VKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSR 145
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAP---DYRK 570
D++++NVL++ EH+ + DFG+ K ++ D ++ + AP K
Sbjct: 146 QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSK 205
Query: 571 ---KCDVYSFRVLALEVI-KGKHPRGFVSSIL-----PSPSVINMRLDEMLDP--RLPPP 619
DV+SF V E++ ++ L + RL L RLP P
Sbjct: 206 FYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCP 265
Query: 620 S--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
PD ++ +M C + P +R + Q + +
Sbjct: 266 PNCPD---EVYQLMR---KCWEFQPSNRTSFQNLIEGF 297
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 1e-22
Identities = 67/310 (21%), Positives = 113/310 (36%), Gaps = 61/310 (19%)
Query: 395 PQNSQGLLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAEL-----PSKEFLA 449
+ G L +L F+G D + +G G G V + E +A
Sbjct: 8 HHHHHGALEVL-FQGPGDPTVFHK--RYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVA 64
Query: 450 VKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS--ILIYEYLKRGS 507
VK + + EI+ L + H +I+K+ G C A + L+ EY+ GS
Sbjct: 65 VKALK---ADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGS 121
Query: 508 LATNL-SNDAAAEEL----------------------DISSKNVLLDLEHKAHVSDFGIA 544
L L + +L D++++NVLLD + + DFG+A
Sbjct: 122 LRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLA 181
Query: 545 KFLKPDSSNWSALVGT---YRYVAP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFV 594
K + + + AP K DV+SF V E++ +
Sbjct: 182 KAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPP 241
Query: 595 SSIL-----PSPSVINMRLDEMLDP--RLPPPS--PDVQGKLISIMEVAFSCLDVSPESR 645
+ L + +RL E+L+ RLP P P ++ +M+ +C + R
Sbjct: 242 TKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPA---EVYHLMK---NCWETEASFR 295
Query: 646 PTMQTITQQL 655
PT + + L
Sbjct: 296 PTFENLIPIL 305
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 1e-22
Identities = 72/279 (25%), Positives = 112/279 (40%), Gaps = 62/279 (22%)
Query: 429 IGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+G G GSV + E +AVKK L ++F EIE L ++H NI
Sbjct: 49 LGKGNFGSVEMCRYDPLQDNTGEVVAVKK----LQHSTEEHLRDFEREIEILKSLQHDNI 104
Query: 484 VKFYGFCSHA-RHSI-LIYEYLKRGSLATNLSNDAA---AEEL----------------- 521
VK+ G C A R ++ LI EYL GSL L +L
Sbjct: 105 VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 164
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAP---DYRK 570
D++++N+L++ E++ + DFG+ K L D + + AP K
Sbjct: 165 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESK 224
Query: 571 ---KCDVYSFRVLALEVI----KGKHPRGFVSSIL---PSPSVINMRLDEMLDP--RLPP 618
DV+SF V+ E+ K K P ++ +I L E+L RLP
Sbjct: 225 FSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR 284
Query: 619 PS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P PD ++ IM C + + RP+ + + ++
Sbjct: 285 PDGCPD---EIYMIMT---ECWNNNVNQRPSFRDLALRV 317
|
| >4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350 | Back alignment and structure |
|---|
Score = 97.5 bits (243), Expect = 3e-22
Identities = 51/266 (19%), Positives = 99/266 (37%), Gaps = 48/266 (18%)
Query: 420 INDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ + IG G G + +K+ N S + +++E E+ L +
Sbjct: 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSK--EREESRREVAVLANM 80
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAA---EEL-------------- 521
+H NIV++ ++ +Y + G L ++ E+
Sbjct: 81 KHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKH 140
Query: 522 ---------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
DI S+N+ L + + DFGIA+ L A +GT Y++P+
Sbjct: 141 VHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENK 200
Query: 568 -YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP-SPDVQG 625
Y K D+++ + E+ KH F + S + +++ P + S D++
Sbjct: 201 PYNNKSDIWALGCVLYELCTLKHA--FEAG---SMKNLVLKIISGSFPPVSLHYSYDLR- 254
Query: 626 KLISIMEVAFSCLDVSPESRPTMQTI 651
L+S +P RP++ +I
Sbjct: 255 SLVS------QLFKRNPRDRPSVNSI 274
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 7e-22
Identities = 65/266 (24%), Positives = 110/266 (41%), Gaps = 61/266 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVK--KFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKF 486
IGSG+ G V+ +K+ +A+K + + +++F E E + K+ H +V+
Sbjct: 16 IGSGQFGLVHLGYWLNKDKVAIKTIREGAM-------SEEDFIEEAEVMMKLSHPKLVQL 68
Query: 487 YGFCSHARHSILIYEYLKRGSLATNL---------------SNDAAA-----EEL----- 521
YG C L+ E+++ G L+ L D EE
Sbjct: 69 YGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHR 128
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAP---DYRK---KC 572
D++++N L+ VSDFG+ +F+ D +++ GT ++ +P + + K
Sbjct: 129 DLAARNCLVGENQVIKVSDFGMTRFVLDDQ--YTSSTGTKFPVKWASPEVFSFSRYSSKS 186
Query: 573 DVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLIS 629
DV+SF VL EV +GK +P + N + E + RL P +
Sbjct: 187 DVWSFGVLMWEVFSEGK---------IPYENRSNSEVVEDISTGFRLYKP-RLASTHVYQ 236
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
IM C PE RP + +QL
Sbjct: 237 IMN---HCWRERPEDRPAFSRLLRQL 259
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 8e-22
Identities = 51/269 (18%), Positives = 96/269 (35%), Gaps = 58/269 (21%)
Query: 428 CIGSGRHGSVYRA-ELPSKEFLAVKKFN-SPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
IG G +VY+ + + +A + L + + F E E L ++H NIV+
Sbjct: 33 EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSER---QRFKEEAEMLKGLQHPNIVR 89
Query: 486 FYG----FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------------------- 521
FY + +L+ E + G+L T L +
Sbjct: 90 FYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRT 149
Query: 522 ------DISSKNVLLDLEH-KAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP-----DYR 569
D+ N+ + + D G+A + + A++GT ++AP Y
Sbjct: 150 PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFA--KAVIGTPEFMAPEMYEEKYD 207
Query: 570 KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK-LI 628
+ DVY+F + LE+ ++P S + + I R+ + P + K +I
Sbjct: 208 ESVDVYAFGMCMLEMATSEYP----YSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEII 263
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQLLF 657
C+ + + R + + LL
Sbjct: 264 E------GCIRQNKDERYS----IKDLLN 282
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 8e-22
Identities = 70/271 (25%), Positives = 115/271 (42%), Gaps = 60/271 (22%)
Query: 422 DFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIAD-QKEFFAEIEALTKIR 479
F IG G G V++ + +++ +A+K + D+I D Q+E I L++
Sbjct: 23 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQE----ITVLSQCD 78
Query: 480 HRNIVKFYGFCSHARHSIL--IYEYLKRGSLATNLSNDAAAEEL---------------- 521
+ K+YG S+ + + L I EYL GS L E
Sbjct: 79 SPYVTKYYG--SYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLH 136
Query: 522 -------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DY 568
DI + NVLL + ++DFG+A L + VGT ++AP Y
Sbjct: 137 SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAY 196
Query: 569 RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR-LDEMLDPRLPPPSPDVQGKL 627
K D++S + A+E+ +G+ P S + P M+ L L P+ PP+ ++G
Sbjct: 197 DSKADIWSLGITAIELARGEPPH---SELHP------MKVL--FLIPKNNPPT--LEGNY 243
Query: 628 ISIME--VAFSCLDVSPESRPTMQTITQQLL 656
++ V +CL+ P RPT ++LL
Sbjct: 244 SKPLKEFVE-ACLNKEPSFRPT----AKELL 269
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 1e-21
Identities = 64/270 (23%), Positives = 109/270 (40%), Gaps = 63/270 (23%)
Query: 429 IGSGRHGSVYRAELPSKEFL---AVK--KFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+GSG G+V + K+ + AVK K + P+ + E AE + ++ + I
Sbjct: 25 LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALK----DELLAEANVMQQLDNPYI 80
Query: 484 VKFYGFCSHARHSILIYEYLKRGSLAT--------------NLSNDAAA-----EEL--- 521
V+ G C + + E + G L L + + EE
Sbjct: 81 VRMIGICEAESWML-VMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFV 139
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++NVLL +H A +SDFG++K L+ D + + A ++ AP+ Y K
Sbjct: 140 HRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSS 199
Query: 571 KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDVQG 625
K DV+SF VL E G+ P + + ML+ R+ P+ P
Sbjct: 200 KSDVWSFGVLMWEAFSYGQ---------KPYRGMKGSEVTAMLEKGERMGCPAGCPR--- 247
Query: 626 KLISIMEVAFSCLDVSPESRPTMQTITQQL 655
++ +M C E+RP + +L
Sbjct: 248 EMYDLM---NLCWTYDVENRPGFAAVELRL 274
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 1e-21
Identities = 48/194 (24%), Positives = 74/194 (38%), Gaps = 10/194 (5%)
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNW-GKCPKLSTLNVSMN 180
RI L GN + + +F NLT L + N I + L L++S N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDN 90
Query: 181 NITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKE-FGKLNSLTKLILRGNQLIGHLPSEI 238
RS+ L L+ L + ++ F L +L L L+ N + LP +
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA-LQALPDDT 148
Query: 239 -GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKE-LGKLVQLSELE 296
L L L L NR SS+ + L L L L + + + + L +L L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLY 207
Query: 297 LSHNFLGREIPSQI 310
L N L +P++
Sbjct: 208 LFANNL-SALPTEA 220
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 6e-19
Identities = 48/276 (17%), Positives = 85/276 (30%), Gaps = 78/276 (28%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFEN 61
+ + L N ++ + ++L L L N + ++ L+ L L L +N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90
Query: 62 NLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNC 121
S+ P+
Sbjct: 91 AQLRSVDPAT----------------------------------------------FHGL 104
Query: 122 PNLVRISLEGNNMRGTISE-AFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
L + L+ ++ + F L +L + DN
Sbjct: 105 GRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL---------------------- 141
Query: 181 NITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI- 238
+++P + +L L L N I + F L+SL +L+L N+ + H+
Sbjct: 142 ---QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAF 197
Query: 239 GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
L +L L L N S+L E+L L L YL L+
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 5e-17
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 8/163 (4%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETW-NLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFL 58
L L +L L DN + T+ L L L L + L + L++L+YL+L
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYL 136
Query: 59 FENNLSGSIPPSV-GNLM-LTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGPIP 115
+N L ++P +L LT L L N + ++ R +L+R+++ N P
Sbjct: 137 QDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 116 KCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNF 158
R+ L+ + L NN+ +EA L +L ++DN +
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-16
Identities = 46/209 (22%), Positives = 71/209 (33%), Gaps = 32/209 (15%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
NL L L N L + L L +L L N S+ + L L L L
Sbjct: 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113
Query: 60 ENNLSGSIPPSV-GNLM-LTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGPIPK 116
L + P + L L L L++N L + R+ G L + + GN +
Sbjct: 114 RCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPER 171
Query: 117 CLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLN 176
R +L R+ L N + + + F +L TL
Sbjct: 172 AFRGLHSLDRLLLHQNRVA----------------HVHPHAFRD--------LGRLMTLY 207
Query: 177 VSMNNITRSIPLEI-GNLSTLNEFDLSLN 204
+ NN++ ++P E L L L+ N
Sbjct: 208 LFANNLS-ALPTEALAPLRALQYLRLNDN 235
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 2e-21
Identities = 54/290 (18%), Positives = 97/290 (33%), Gaps = 76/290 (26%)
Query: 418 RAINDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
R DF IGSG G V++A+ + +K+ + ++ E++AL
Sbjct: 8 RFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY--------NNEKAEREVKALA 59
Query: 477 KIRHRNIVKFYGF-------------CSHARHSILIY---EYLKRGSLATNLSNDAAA-- 518
K+ H NIV + G S + ++ E+ +G+L +
Sbjct: 60 KLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKL 119
Query: 519 -EEL-----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554
+ L D+ N+ L + + DFG+ LK D
Sbjct: 120 DKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKR- 178
Query: 555 SALVGTYRYVAP------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRL 608
+ GT RY++P DY K+ D+Y+ ++ E++ +
Sbjct: 179 TRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDT----------AFETSKFF 228
Query: 609 DEMLDPRLPPP-SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657
++ D + + L+ L PE RP I + L
Sbjct: 229 TDLRDGIISDIFDKKEK-TLLQ------KLLSKKPEDRPNTSEILRTLTV 271
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 2e-21
Identities = 51/292 (17%), Positives = 103/292 (35%), Gaps = 74/292 (25%)
Query: 418 RAINDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
R + DF+ C+G G G V+ A+ A+K+ P +++ E++AL
Sbjct: 2 RYLTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNREL---AREKVMREVKALA 58
Query: 477 KIRHRNIVKFYGF---------CSHARHSILIY---EYLKRGSLATNLSNDAAAEEL--- 521
K+ H IV+++ + + +Y + ++ +L ++ EE
Sbjct: 59 KLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERS 118
Query: 522 ------------------------DISSKNVLLDLEHKAHVSDFGIAKFLK--------- 548
D+ N+ ++ V DFG+ +
Sbjct: 119 VCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVL 178
Query: 549 ---PDSSNWSALVGTYRYVAP------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILP 599
P + + VGT Y++P Y K D++S ++ E++ +P F + +
Sbjct: 179 TPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELL---YP--FSTQMER 233
Query: 600 SPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
++ ++R + P L + ++ L SP RP I
Sbjct: 234 VRTLTDVRNLKF--PPLFTQKYPCEYVMVQ------DMLSPSPMERPEAINI 277
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 3e-21
Identities = 58/261 (22%), Positives = 98/261 (37%), Gaps = 58/261 (22%)
Query: 428 CIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKF 486
+G G +G VY +L ++ +A+K+ +P + EI ++H+NIV++
Sbjct: 29 VLGKGTYGIVYAGRDLSNQVRIAIKE----IPERDSRYSQPLHEEIALHKHLKHKNIVQY 84
Query: 487 YGFCSHARHSILIY-EYLKRGSLATNLSNDAAAEEL------------------------ 521
G S I I+ E + GSL+ L + +
Sbjct: 85 LGSFSE-NGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQI 143
Query: 522 ---DISSKNVLLDLEHKAHV--SDFGIAKFLKPDSSNWSALVGTYRYVAP--------DY 568
DI NVL++ + + SDFG +K L + GT +Y+AP Y
Sbjct: 144 VHRDIKGDNVLIN-TYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGY 202
Query: 569 RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
K D++S +E+ GK P L P ++ ++ P P+ +
Sbjct: 203 GKAADIWSLGCTIIEMATGKPPF----YELGEPQAAMFKVGMF---KVHPEIPES----M 251
Query: 629 SIMEVAF--SCLDVSPESRPT 647
S AF C + P+ R
Sbjct: 252 SAEAKAFILKCFEPDPDKRAC 272
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 3e-21
Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 55/268 (20%)
Query: 423 FDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
+ IG G G+VY A ++ + + +A+++ N L ++ EI + + ++
Sbjct: 22 YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMN--LQQQP--KKELIINEILVMRENKNP 77
Query: 482 NIVKFYGFCSHARHSIL--IYEYLKRGSLATNLSNDAAAEEL------------------ 521
NIV + S+ L + EYL GSL ++ E
Sbjct: 78 NIVNYLD--SYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN 135
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DYRK 570
DI S N+LL ++ ++DFG + P+ S S +VGT ++AP Y
Sbjct: 136 QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGP 195
Query: 571 KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630
K D++S ++A+E+I+G+ P + P +R ++ P KL S
Sbjct: 196 KVDIWSLGIMAIEMIEGEPPY---LNENP------LRALYLI-ATNGTPELQNPEKL-SA 244
Query: 631 MEVAF--SCLDVSPESRPTMQTITQQLL 656
+ F CL++ E R + ++LL
Sbjct: 245 IFRDFLNRCLEMDVEKRGS----AKELL 268
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 4e-21
Identities = 67/268 (25%), Positives = 109/268 (40%), Gaps = 55/268 (20%)
Query: 423 FDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
D+ IG G G V A E S +AVK + L Q ++ F E+ + +H
Sbjct: 47 LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMD--LRKQQ--RRELLFNEVVIMRDYQHF 102
Query: 482 NIVKFYGFCSHARHSIL--IYEYLKRGSLATNLSNDAAAEEL------------------ 521
N+V+ Y S+ L + E+L+ G+L +S EE
Sbjct: 103 NVVEMYK--SYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQ 160
Query: 522 -----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DYRK 570
DI S ++LL L+ + +SDFG + D +LVGT ++AP Y
Sbjct: 161 GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYAT 220
Query: 571 KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630
+ D++S ++ +E++ G+ P S P ++ + L PPP K+ +
Sbjct: 221 EVDIWSLGIMVIEMVDGEPPY---FSDSP------VQAMKRL-RDSPPPKLKNSHKVSPV 270
Query: 631 MEVAF--SCLDVSPESRPTMQTITQQLL 656
+ F L P+ R T Q+LL
Sbjct: 271 LR-DFLERMLVRDPQERAT----AQELL 293
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 6e-21
Identities = 62/266 (23%), Positives = 107/266 (40%), Gaps = 61/266 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVK--KFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKF 486
+G+G+ G V + + +A+K K S + EF E + + + H +V+
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-------SEDEFIEEAKVMMNLSHEKLVQL 84
Query: 487 YGFCSHARHSILIYEYLKRGSLATNL---------------SNDAAA-----EEL----- 521
YG C+ R +I EY+ G L L D E
Sbjct: 85 YGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHR 144
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAP---DYRK---KC 572
D++++N L++ + VSDFG+++++ D +++ VG+ R+ P Y K K
Sbjct: 145 DLAARNCLVNDQGVVKVSDFGLSRYVLDDE--YTSSVGSKFPVRWSPPEVLMYSKFSSKS 202
Query: 573 DVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLIS 629
D+++F VL E+ GK +P N E + RL P K+ +
Sbjct: 203 DIWAFGVLMWEIYSLGK---------MPYERFTNSETAEHIAQGLRLYRP-HLASEKVYT 252
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
IM SC + RPT + + +
Sbjct: 253 IMY---SCWHEKADERPTFKILLSNI 275
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 6e-21
Identities = 70/264 (26%), Positives = 106/264 (40%), Gaps = 57/264 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
+GSG+ G V + + +AVK S+ EFF E + + K+ H +VKFYG
Sbjct: 16 LGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSED-----EFFQEAQTMMKLSHPKLVKFYG 70
Query: 489 FCSHARHSILIYEYLKRGSLATNL---------------SNDAAA-----EEL-----DI 523
CS ++ EY+ G L L D E D+
Sbjct: 71 VCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDL 130
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAP---DYRK---KCDV 574
+++N L+D + VSDFG+ +++ D + + VGT ++ AP Y K K DV
Sbjct: 131 AARNCLVDRDLCVKVSDFGMTRYVLDDQ--YVSSVGTKFPVKWSAPEVFHYFKYSSKSDV 188
Query: 575 YSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLISIM 631
++F +L EV GK +P N + + RL P + IM
Sbjct: 189 WAFGILMWEVFSLGK---------MPYDLYTNSEVVLKVSQGHRLYRP-HLASDTIYQIM 238
Query: 632 EVAFSCLDVSPESRPTMQTITQQL 655
SC PE RPT Q + +
Sbjct: 239 Y---SCWHELPEKRPTFQQLLSSI 259
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 1e-20
Identities = 59/272 (21%), Positives = 105/272 (38%), Gaps = 61/272 (22%)
Query: 426 KYCIGSGRHGSVYRAELPSKEFL---AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
+G G GSV + ++ A+K + AD +E E + + ++ +
Sbjct: 15 DIELGCGNFGSVRQGVYRMRKKQIDVAIKVLK---QGTEKADTEEMMREAQIMHQLDNPY 71
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSLAT---------------NLSNDAAA-----EEL- 521
IV+ G C + + E G L L + + EE
Sbjct: 72 IVRLIGVCQAEALML-VMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKN 130
Query: 522 ----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK- 570
D++++NVLL H A +SDFG++K L D S ++A ++ AP+ +RK
Sbjct: 131 FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKF 190
Query: 571 --KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDV 623
+ DV+S+ V E + G+ P + + ++ R+ P P
Sbjct: 191 SSRSDVWSYGVTMWEALSYGQK---------PYKKMKGPEVMAFIEQGKRMECPPECPP- 240
Query: 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+L ++M C E RP T+ Q++
Sbjct: 241 --ELYALM---SDCWIYKWEDRPDFLTVEQRM 267
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 2e-20
Identities = 65/287 (22%), Positives = 119/287 (41%), Gaps = 65/287 (22%)
Query: 410 KFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFL-AVK--KFNSPLPSDQIADQK 466
+D E+ R D K+ +G G++G VY AVK K ++ + +
Sbjct: 211 NYDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-------EVE 261
Query: 467 EFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNL-------------- 512
EF E + +I+H N+V+ G C+ +I E++ G+L L
Sbjct: 262 EFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLL 321
Query: 513 --SNDAAA-----EEL-----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560
+ ++ E+ +++++N L+ H V+DFG+++ + D+ ++A G
Sbjct: 322 YMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAHAGA 379
Query: 561 ---YRYVAP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDE 610
++ AP Y K K DV++F VL E+ G P P + ++ E
Sbjct: 380 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGM---------SPYPGIDLSQVYE 430
Query: 611 MLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+L+ R+ P K+ +M +C +P RP+ I Q
Sbjct: 431 LLEKDYRMERP-EGCPEKVYELM---RACWQWNPSDRPSFAEIHQAF 473
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 2e-20
Identities = 51/271 (18%), Positives = 84/271 (30%), Gaps = 55/271 (20%)
Query: 418 RAINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
F +G G +G V++ AVK+ SP + D+ AE+ +
Sbjct: 54 FFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPK--DRARKLAEVGSHE 111
Query: 477 KI-RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAA--EE------------- 520
K+ +H V+ L E SL + A+ E
Sbjct: 112 KVGQHPCCVRLEQAWEEGGILYLQTELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLAL 170
Query: 521 ----------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP---- 566
LD+ N+ L + + DFG+ L + G RY+AP
Sbjct: 171 AHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAG-EVQEGDPRYMAPELLQ 229
Query: 567 -DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPS--PSVINMRLDEMLDPRLPPP-SPD 622
Y DV+S + LEV P +R L P S +
Sbjct: 230 GSYGTAADVFSLGLTILEVACNMEL--------PHGGEGWQQLR-QGYLPPEFTAGLSSE 280
Query: 623 VQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
++ ++ L+ P+ R T + +
Sbjct: 281 LRS-VLV------MMLEPDPKLRATAEALLA 304
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 4e-20
Identities = 65/268 (24%), Positives = 106/268 (39%), Gaps = 57/268 (21%)
Query: 429 IGSGRHGSVYRAEL--PSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IGSG G V L P + + A+K + Q +++F +E + + H NI+
Sbjct: 57 IGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQ---RRDFLSEASIMGQFDHPNII 113
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNLSND----------------AAA----EEL--- 521
+ G + R ++++ EY++ GSL T L A +L
Sbjct: 114 RLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYV 173
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAP---DYRK--- 570
D++++NVL+D VSDFG+++ L+ D G R+ AP +R
Sbjct: 174 HRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSS 233
Query: 571 KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKL 627
DV+SF V+ EV+ G+ P ++ N + ++ RLP P L
Sbjct: 234 ASDVWSFGVVMWEVLAYGE---------RPYWNMTNRDVISSVEEGYRLPAP-MGCPHAL 283
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655
+M C RP I L
Sbjct: 284 HQLM---LDCWHKDRAQRPRFSQIVSVL 308
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 5e-20
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 5/131 (3%)
Query: 170 PKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQ 229
L+ + ++ N+T +E + + ++ H L++L +L + G
Sbjct: 44 NSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKD 99
Query: 230 LIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKL 289
+ + LT L L++S + I + L K++ +DLS I ++ L L
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTL 158
Query: 290 VQLSELELSHN 300
+L L + +
Sbjct: 159 PELKSLNIQFD 169
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-19
Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 11/157 (7%)
Query: 120 NCPNLVRISLEGNNMRGTISEAFGI-YL-NLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177
+L I+L N +++ GI Y N+ L I++ + + L L +
Sbjct: 42 QMNSLTYITLANIN----VTDLTGIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRI 95
Query: 178 SMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSE 237
++T + L++L D+S + I + L + + L N I +
Sbjct: 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MP 154
Query: 238 IGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
+ +L +L+ LN+ + + + KL+ L
Sbjct: 155 LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAF 189
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 2e-15
Identities = 19/131 (14%), Positives = 49/131 (37%), Gaps = 4/131 (3%)
Query: 170 PKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQ 229
+ + + + +++L L+ ++ +++ L +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINV--TDLTGIEYAHNIKDLTINNIH 77
Query: 230 LIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKL 289
+ + I L+ LE L + +S +L L L LD+S + ++ L
Sbjct: 78 -ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135
Query: 290 VQLSELELSHN 300
+++ ++LS+N
Sbjct: 136 PKVNSIDLSYN 146
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 2e-15
Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 5/140 (3%)
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177
+ N+ +++ + T NL L I + + N L+ L++
Sbjct: 62 IEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119
Query: 178 SMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSE 237
S + SI +I L +N DLS N + I L L L ++ + +
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDG-VHDY-RG 176
Query: 238 IGSLTKLEFLNLSTNRFSSL 257
I KL L +
Sbjct: 177 IEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 1e-14
Identities = 26/206 (12%), Positives = 59/206 (28%), Gaps = 33/206 (16%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L + + + + SL + L L + + +++ L +
Sbjct: 21 TFKAYLNGLLGQSSTANITEAQ---MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINN 75
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
+ + + P G L L + T + L
Sbjct: 76 IHAT-NYNPISGLSNLERLRIMGKDVTSD------------------------KIPNLSG 110
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
+L + + + +I + +D+S N +I P+L +LN+ +
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFD 169
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHI 206
+ +E + LN+ I
Sbjct: 170 GVHDYRGIE--DFPKLNQLYAFSQTI 193
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 3e-14
Identities = 33/207 (15%), Positives = 68/207 (32%), Gaps = 35/207 (16%)
Query: 25 NLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLM-LTVLALEN 83
K+ + LG + + + ++SL Y+ L N++ + + + L + N
Sbjct: 21 TFKAYLNGLLGQSS---TANITEAQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINN 75
Query: 84 NHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFG 143
H T N + NL R+ + G ++
Sbjct: 76 IHAT-----NY---------------------NPISGLSNLERLRIMGKDVTSDKIPNLS 109
Query: 144 IYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSL 203
+LT LDIS + I + PK++++++S N I + L L ++
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF 168
Query: 204 NHIVGKIPKEFGKLNSLTKLILRGNQL 230
+ + L +L +
Sbjct: 169 DGVHDYRG--IEDFPKLNQLYAFSQTI 193
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 8e-13
Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 9/140 (6%)
Query: 174 TLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGH 233
+ + +IP L + ++NSLT + L +
Sbjct: 5 QTGLKASQDNVNIPDS--TFKAYLNGLLGQSST---ANITEAQMNSLTYITLANIN-VTD 58
Query: 234 LPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLS 293
L + I ++ L ++ ++ + L L L + + L L L+
Sbjct: 59 L-TGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115
Query: 294 ELELSHNFLGREIPSQICSM 313
L++SH+ I ++I ++
Sbjct: 116 LLDISHSAHDDSILTKINTL 135
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 7e-04
Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 21/86 (24%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLP---------------- 44
LT+L L + + I T+ L + + L N +
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169
Query: 45 -----SSVGNLSSLRYLFLFENNLSG 65
+ + L L+ F + G
Sbjct: 170 GVHDYRGIEDFPKLNQLYAFSQTIGG 195
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 5e-20
Identities = 71/293 (24%), Positives = 112/293 (38%), Gaps = 78/293 (26%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+D++ + IGSG V A P KE +A+K+ N L Q E EI+A+++
Sbjct: 15 DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRIN--LEKCQ-TSMDELLKEIQAMSQCH 71
Query: 480 HRNIVKFYGFCSHARHSIL--IYEYLKRGSLATNLSNDAAAEEL---------------- 521
H NIV +Y S L + + L GS+ + + A E
Sbjct: 72 HPNIVSYY--TSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILRE 129
Query: 522 ----------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL-----VGT 560
D+ + N+LL + ++DFG++ FL VGT
Sbjct: 130 VLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGT 189
Query: 561 YRYVAP-------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR-LDEML 612
++AP Y K D++SF + A+E+ G P P M+ L ML
Sbjct: 190 PCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPY---HKYPP------MKVL--ML 238
Query: 613 DPRLPPPSPDVQGKLISIMEVAFS---------CLDVSPESRPTMQTITQQLL 656
+ PPS + + +++ + CL PE RPT +LL
Sbjct: 239 TLQNDPPSLETGVQDKEMLK-KYGKSFRKMISLCLQKDPEKRPT----AAELL 286
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 8e-20
Identities = 62/268 (23%), Positives = 110/268 (41%), Gaps = 63/268 (23%)
Query: 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G+G+ G V+ A +AVK + F AE + ++H +VK +
Sbjct: 195 KLGAGQFGEVWMATYNKHTKVAVKTMKPGSM-----SVEAFLAEANVMKTLQHDKLVKLH 249
Query: 488 GFCSHARHSILIYEYLKRGSLATNL----------------SNDAAA-----EEL----- 521
+ I I E++ +GSL L S A E+
Sbjct: 250 AVVTKEPIYI-ITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHR 308
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAP---DYRK---KC 572
D+ + N+L+ ++DFG+A+ ++ + ++A G ++ AP ++ K
Sbjct: 309 DLRAANILVSASLVCKIADFGLARVIEDNE--YTAREGAKFPIKWTAPEAINFGSFTIKS 366
Query: 573 DVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDVQGKL 627
DV+SF +L +E++ G+ +P P + N + L+ R+P P P+ +L
Sbjct: 367 DVWSFGILLMEIVTYGR---------IPYPGMSNPEVIRALERGYRMPRPENCPE---EL 414
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655
+IM C PE RPT + I L
Sbjct: 415 YNIM---MRCWKNRPEERPTFEYIQSVL 439
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 1e-19
Identities = 54/347 (15%), Positives = 100/347 (28%), Gaps = 49/347 (14%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV--GNLSSLRYLFL 58
+L L + N L + + SL L L N F LP GNL+ L +L L
Sbjct: 98 FNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGL 153
Query: 59 FENNLSGSIPPSVGNLMLTVLALENNHFTG-------------NLRHNICRNGALERVIV 105
V +L L+ + L+ + + H + +L V V
Sbjct: 154 SAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQV 213
Query: 106 GG-----------------NHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLN- 147
+ + + +++ ++ T + ++
Sbjct: 214 NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273
Query: 148 ----LTFLDISDNNFFGEIASNWGKCPKLST-----LNVSMNNITRSIPLEIGNLSTLNE 198
+ +L+I + I + + +V S + +N
Sbjct: 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333
Query: 199 FDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL- 257
LS++ +S T L N + +L +L+ L L N +
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393
Query: 258 -IPESLGNLLKLHYLDLSKYQFIQELPKEL-GKLVQLSELELSHNFL 302
+ N+ L LD+S + L LS N L
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 5e-19
Identities = 61/359 (16%), Positives = 111/359 (30%), Gaps = 52/359 (14%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L+ LR L L N + L + L L + N+ + ++ ++SLR+L L
Sbjct: 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSF 130
Query: 61 NNLSGSIPPSV--GNLM-LTVLALENN----------------HFTGNLRHNICRNGALE 101
N+ +P GNL LT L L +L + G E
Sbjct: 131 NDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE 189
Query: 102 RVIVGG-----------NHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAF-------G 143
+ + + F + + +L +++ N+ F
Sbjct: 190 SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249
Query: 144 IYLNLTF--LDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGN-----LSTL 196
LN+T ++ + W + + LN+ IT I E L +L
Sbjct: 250 TLLNVTLQHIETTWKCSVKLFQFFWPRP--VEYLNIYNLTITERIDREEFTYSETALKSL 307
Query: 197 NEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSS 256
+ + + + +L + S + FLN + N F+
Sbjct: 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367
Query: 257 LIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMEC 315
+ + L +L L L + ++ K +S LE L + S C
Sbjct: 368 SVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSL-NSLNSHAYDRTC 424
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 9e-19
Identities = 52/346 (15%), Positives = 99/346 (28%), Gaps = 48/346 (13%)
Query: 1 NLTNLRELHLRDNYLTGL------------------------IPTETWNLKSLVKLGLGG 36
NLT L L L L TE+ + + L L
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203
Query: 37 NQ--------FRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTG 88
+ LS+++ L + L + L++ T
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263
Query: 89 NLRHNICRN---GALERVIVGGNHFRGPIPK-----CLRNCPNLVRISLEGNNMRGTISE 140
+ + +E + + I + +L+ ++ +
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323
Query: 141 AFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFD 200
+ ++ + +S ++ + LN + N T S+ L L
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383
Query: 201 LSLNHIVGKIPKEFGKLNSLTKLILRGNQL----IGHLPSEIGSLTKLEFLNLSTNRFSS 256
L N + K +++ L L + LNLS+N +
Sbjct: 384 LQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442
Query: 257 LIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFL 302
+ L K+ LDL + I +PK++ L L EL ++ N L
Sbjct: 443 SVFRCL--PPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQL 485
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 2e-16
Identities = 55/342 (16%), Positives = 105/342 (30%), Gaps = 46/342 (13%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFEN 61
+ L L N ++ L + L L L L N+ R SL V L YL + N
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110
Query: 62 NLSGSIPPSVGNLM-LTVLALENNHFT-----------GNLRH-----------NICRNG 98
L +I + L L L N F L ++
Sbjct: 111 RLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167
Query: 99 ALERVIVGGNHFRGPIPKCLRNC---PNLVRISLEGNN-----MRGTISEAFGIYLNLTF 150
L + + I PN + L + ++ +S +L L+
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227
Query: 151 LDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIP-----LEIGNLSTLNEFDLSLNH 205
+ ++D N + + LNV++ +I + + + ++
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287
Query: 206 IVGKIPKEFG-----KLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPE 260
I +I +E L SL ++ + + ++ LS + +
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347
Query: 261 SLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFL 302
+ +L+ ++ F + + L +L L L N L
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 2e-14
Identities = 49/315 (15%), Positives = 92/315 (29%), Gaps = 42/315 (13%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRG-------SLPSSVGNLSSL 53
+ N LHL + + ++ +L L L + + S + +L
Sbjct: 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251
Query: 54 RYLFLFENNLSG----SIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVI----- 104
+ L + + + L + N T +
Sbjct: 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311
Query: 105 VGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIAS 164
V F + L ++ + TFL+ + N F +
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371
Query: 165 NWGKCPKLSTLNVSMNNITRSIPLEIG---NLSTLNEFDLSLNHI-VGKIPKEFGKLNSL 220
+L TL + N + + N+S+L D+SLN + + S+
Sbjct: 372 GCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430
Query: 221 TKLILRGNQL---------------------IGHLPSEIGSLTKLEFLNLSTNRFSSLIP 259
L L N L I +P ++ L L+ LN+++N+ S+
Sbjct: 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD 490
Query: 260 ESLGNLLKLHYLDLS 274
L L Y+ L
Sbjct: 491 GVFDRLTSLQYIWLH 505
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 1e-12
Identities = 48/266 (18%), Positives = 89/266 (33%), Gaps = 42/266 (15%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWN-----LKSLVKLGLGGNQFRGSLPSSVGNLSSLRY 55
+ L++ + +T I E + LKSL+ + F S + + +
Sbjct: 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333
Query: 56 LFLFENNLSGSIPPSVGNLM--LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGP 113
L ++ I T L N FT ++ L+ +I+ N +
Sbjct: 334 KMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-- 390
Query: 114 IPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNF----FGEIASNWGKC 169
+ + N++ L+ D +
Sbjct: 391 -----------------------NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427
Query: 170 PKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQ 229
+ LN+S N +T S+ + + DL N I IPK+ L +L +L + NQ
Sbjct: 428 ESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQ 484
Query: 230 LIGHLPSEI-GSLTKLEFLNLSTNRF 254
L +P + LT L+++ L N +
Sbjct: 485 L-KSVPDGVFDRLTSLQYIWLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 233 HLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL-GKLVQ 291
H+P ++ + + L+LS N S L + L +L L LS + I+ L +
Sbjct: 45 HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQD 101
Query: 292 LSELELSHNFLGREIPSQ 309
L L++SHN L + I
Sbjct: 102 LEYLDVSHNRL-QNISCC 118
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 1e-19
Identities = 54/282 (19%), Positives = 100/282 (35%), Gaps = 82/282 (29%)
Query: 429 IGSGRHGSVYRAELPSKEFL--------AVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
+G G +++ +K L + FF ++K+ H
Sbjct: 16 LGQGTFTKIFKGVRREVGDYGQLHETEVLLKV----LDKAHRNYSESFFEAASMMSKLSH 71
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSLAT---------------NLSNDAAA-----EE 520
+++V YG C +IL+ E++K GSL T ++ AA EE
Sbjct: 72 KHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEE 131
Query: 521 L-----DISSKNVLLDLEHKAH--------VSDFGIAKFLKPDSSNWSALVGTYRY---- 563
++ +KN+LL E +SD GI+ + P +
Sbjct: 132 NTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDI--------LQERIPW 183
Query: 564 VAP----DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP- 614
V P + + D +SF E+ G P ++ + R + +
Sbjct: 184 VPPECIENPKNLNLATDKWSFGTTLWEICSGGD---------KPLSALDSQRKLQFYEDR 234
Query: 615 -RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+LP P +L +++ +C+D P+ RP+ + I + L
Sbjct: 235 HQLPAPKAA---ELANLIN---NCMDYEPDHRPSFRAIIRDL 270
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 1e-19
Identities = 54/294 (18%), Positives = 98/294 (33%), Gaps = 75/294 (25%)
Query: 418 RAINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
R +DF+ +G G G V +A + A+KK +++ +E+ L
Sbjct: 3 RYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRH---TEE--KLSTILSEVMLLA 57
Query: 477 KIRHRNIVKFYGFCSHARHSIL----------IY---EYLKRGSLA-------TNLSNDA 516
+ H+ +V++Y R+ + ++ EY + G+L N D
Sbjct: 58 SLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDE 117
Query: 517 AAE---EL---------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL- 557
++ D+ N+ +D + DFG+AK +
Sbjct: 118 YWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDS 177
Query: 558 -------------VGTYRYVAP-------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSI 597
+GT YVA Y +K D+YS ++ E+I +I
Sbjct: 178 QNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNI 237
Query: 598 LPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
L + + P V+ K+I +D P RP +T+
Sbjct: 238 L---KKL-RSVSIEFPPDFDDNKMKVEKKIIR------LLIDHDPNKRPGARTL 281
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 1e-19
Identities = 54/304 (17%), Positives = 97/304 (31%), Gaps = 62/304 (20%)
Query: 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFENN 62
+ R +++ +T IP++ ++ ++L + R + L + + +N+
Sbjct: 10 SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQND 65
Query: 63 LSGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
+ I V L + +E N+ P+ +N
Sbjct: 66 VLEVIEADVFSNLPKLHEIRIEKA-----------------------NNLLYINPEAFQN 102
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNW--GKCPKLSTLNVS 178
PNL + + ++ L LDI DN I N G + L ++
Sbjct: 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162
Query: 179 MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI 238
N I I F + N + LP+++
Sbjct: 163 KNGIQ-EIHNSA-----------------------FNGTQLDELNLSDNNN-LEELPNDV 197
Query: 239 -GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELEL 297
+ L++S R SL L NL KL +++LP L KLV L E L
Sbjct: 198 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKLP-TLEKLVALMEASL 253
Query: 298 SHNF 301
++
Sbjct: 254 TYPS 257
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 3e-14
Identities = 60/344 (17%), Positives = 115/344 (33%), Gaps = 61/344 (17%)
Query: 1 NLTNLRELHLRDNYLTGLIPTET-WNLKSLVKLGL-GGNQFRGSLPSSV-GNLSSLRYLF 57
+L ++ + N + +I + NL L ++ + N + NL +L+YL
Sbjct: 52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLL 110
Query: 58 LFENNLSGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIP 115
+ + +P +L +L +++N + N F G
Sbjct: 111 ISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNS---------------FVG--- 151
Query: 116 KCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTL 175
V + L N ++ +I ++ F G +L L
Sbjct: 152 ----LSFESVILWLNKNGIQ----------------EIHNSAFNG---------TQLDEL 182
Query: 176 NVSMNNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHL 234
N+S NN +P ++ S D+S I +P L +L KL R + L
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKL 239
Query: 235 PSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKY--QFIQELPKELGKLVQL 292
P+ + L L +L+ + +LH + Q + + + G+ L
Sbjct: 240 PT-LEKLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSL 298
Query: 293 SELELSHNFLGREIPSQICSMECCEVFCTITNSVPTNNFLNCQK 336
+E S G ++ + C +T S + F C+
Sbjct: 299 AEDNESSYSRGFDMTYTEFDYDLCNEVVDVTCSPKPDAFNPCED 342
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 91.7 bits (227), Expect = 2e-19
Identities = 51/300 (17%), Positives = 90/300 (30%), Gaps = 47/300 (15%)
Query: 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLS 64
+ E + + P + +K L + L+S+ + +++
Sbjct: 1 MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK 56
Query: 65 GSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNL 124
S+ +T L L N T +I K L N NL
Sbjct: 57 -SVQGIQYLPNVTKLFLNGNKLT-----DI---------------------KPLTNLKNL 89
Query: 125 VRISLEGNNMRGTIS--EAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNI 182
+ L+ N I + L L + N + P+L +L + N I
Sbjct: 90 GWLFLDENK----IKDLSSLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKI 143
Query: 183 TRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLT 242
T L L+ L+ L N I I L L L L N I L + L
Sbjct: 144 TDITVLS--RLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNH-ISDL-RALAGLK 197
Query: 243 KLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFL 302
L+ L L + + NL+ + + + + P+ + + + +
Sbjct: 198 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLP 255
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 66.7 bits (162), Expect = 1e-11
Identities = 35/183 (19%), Positives = 62/183 (33%), Gaps = 11/183 (6%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
NL NL L L +N + L + +LK L L L N + + + +L L L+L
Sbjct: 85 NLKNLGWLFLDENKIKDLSSLK--DLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGN 140
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N ++ I L L+LE+N + ++ + L+ + + NH + L
Sbjct: 141 NKIT-DITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS--DLRALAG 195
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
NL + L + + +D + NV +
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP--EIISDDGDYEKPNVKWH 253
Query: 181 NIT 183
Sbjct: 254 LPE 256
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 2e-19
Identities = 61/268 (22%), Positives = 111/268 (41%), Gaps = 63/268 (23%)
Query: 429 IGSGRHGSVYRAELPSKEFL-AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G G++G VY AVK + + +EF E + +I+H N+V+
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFLKEAAVMKEIKHPNLVQLL 75
Query: 488 GFCSHARHSILIYEYLKRGSLATNL----------------SNDAAA-----EEL----- 521
G C+ +I E++ G+L L + ++ E+
Sbjct: 76 GVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHR 135
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAP---DYRK---KC 572
D++++N L+ H V+DFG+++ + D+ ++A G ++ AP Y K K
Sbjct: 136 DLAARNCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAKFPIKWTAPESLAYNKFSIKS 193
Query: 573 DVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDVQGKL 627
DV++F VL E+ G P P + ++ E+L+ R+ P P+ K+
Sbjct: 194 DVWAFGVLLWEIATYGM---------SPYPGIDLSQVYELLEKDYRMERPEGCPE---KV 241
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655
+M +C +P RP+ I Q
Sbjct: 242 YELMR---ACWQWNPSDRPSFAEIHQAF 266
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 2e-19
Identities = 58/270 (21%), Positives = 96/270 (35%), Gaps = 59/270 (21%)
Query: 429 IGSGRHGSVYRAEL--PSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G G G V R E PS + + AVK + S +F E+ A+ + HRN++
Sbjct: 26 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQP-EAMDDFIREVNAMHSLDHRNLI 84
Query: 485 KFYGFCSHARHSI-LIYEYLKRGSLATNLSND----------------AAA----EEL-- 521
+ YG + ++ E GSL L A E
Sbjct: 85 RLYGVVL--TPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRF 142
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAP---DYRK-- 570
D++++N+LL + DFG+ + L + ++ + + AP R
Sbjct: 143 IHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFS 202
Query: 571 -KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP---RLPPPSPDVQG 625
D + F V E+ G+ P + ++ +D RLP P D
Sbjct: 203 HASDTWMFGVTLWEMFTYGQ---------EPWIGLNGSQILHKIDKEGERLPRP-EDCPQ 252
Query: 626 KLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ ++M C PE RPT + L
Sbjct: 253 DIYNVMV---QCWAHKPEDRPTFVALRDFL 279
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613 | Back alignment and structure |
|---|
Score = 91.2 bits (226), Expect = 2e-19
Identities = 58/267 (21%), Positives = 106/267 (39%), Gaps = 57/267 (21%)
Query: 429 IGSGRHGSVYRAELPSKEFL---AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
+G G GSV + ++ A+K + AD +E E + + ++ + IV+
Sbjct: 344 LGCGNFGSVRQGVYRMRKKQIDVAIKVLK---QGTEKADTEEMMREAQIMHQLDNPYIVR 400
Query: 486 FYGFCSHARHSILIYEYLKRGSLAT---------------NLSNDAAA-----EEL---- 521
G C + + E G L L + + EE
Sbjct: 401 LIGVCQAEALML-VMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVH 459
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK---K 571
+++++NVLL H A +SDFG++K L D S ++A ++ AP+ +RK +
Sbjct: 460 RNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSR 519
Query: 572 CDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLI 628
DV+S+ V E + G+ P + + ++ R+ P P+ +L
Sbjct: 520 SDVWSYGVTMWEALSYGQK---------PYKKMKGPEVMAFIEQGKRMECP-PECPPELY 569
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQL 655
++M C E RP T+ Q++
Sbjct: 570 ALM---SDCWIYKWEDRPDFLTVEQRM 593
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 52/271 (19%), Positives = 100/271 (36%), Gaps = 64/271 (23%)
Query: 429 IGSGRHGSVYRAELPSKEF-----LAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+GSG G+VY+ + +A+K+ + KE E + + + ++
Sbjct: 23 LGSGAFGTVYKGLWIPEGEKVKIPVAIKELR---EATSPKANKEILDEAYVMASVDNPHV 79
Query: 484 VKFYGFCSHARHSI-LIYEYLKRGSLAT---------------NLSNDAAA-----EEL- 521
+ G C ++ LI + + G L N A E+
Sbjct: 80 CRLLGICL--TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRR 137
Query: 522 ----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP---DYRK-- 570
D++++NVL+ ++DFG+AK L + + A G +++A +R
Sbjct: 138 LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYT 197
Query: 571 -KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDVQ 624
+ DV+S+ V E++ G P + + +L+ RLP P
Sbjct: 198 HQSDVWSYGVTVWELMTFGSK---------PYDGIPASEISSILEKGERLPQPPICTI-- 246
Query: 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ IM C + +SRP + + +
Sbjct: 247 -DVYMIM---RKCWMIDADSRPKFRELIIEF 273
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 3e-19
Identities = 62/268 (23%), Positives = 112/268 (41%), Gaps = 57/268 (21%)
Query: 429 IGSGRHGSVYRAEL--PSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G+G G V L PSK+ + A+K Q +++F E + + H NI+
Sbjct: 53 VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQ---RRDFLGEASIMGQFDHPNII 109
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNL---------------SNDAAA-----EEL--- 521
+ G + ++ +++ EY++ GSL + L A+ ++
Sbjct: 110 RLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYV 169
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK--- 570
D++++N+L++ VSDFG+ + L+ D G R+ +P+ YRK
Sbjct: 170 HRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTS 229
Query: 571 KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKL 627
DV+S+ ++ EV+ G+ P + N + + +D RLPPP D L
Sbjct: 230 ASDVWSYGIVLWEVMSYGE---------RPYWEMSNQDVIKAVDEGYRLPPP-MDCPAAL 279
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655
+M C +RP + I L
Sbjct: 280 YQLM---LDCWQKDRNNRPKFEQIVSIL 304
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 3e-19
Identities = 60/269 (22%), Positives = 108/269 (40%), Gaps = 65/269 (24%)
Query: 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G+G+ G V+ +AVK F AE + +++H+ +V+ Y
Sbjct: 20 RLGAGQFGEVWMGYYNGHTKVAVKSLK-----QGSMSPDAFLAEANLMKQLQHQRLVRLY 74
Query: 488 GFCSHARHSILI-YEYLKRGSLATNL----------------SNDAAA-----EEL---- 521
+ + I I EY++ GSL L + A EE
Sbjct: 75 AVVT--QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIH 132
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAP---DYRK---K 571
D+ + N+L+ ++DFG+A+ ++ + ++A G ++ AP +Y K
Sbjct: 133 RDLRAANILVSDTLSCKIADFGLARLIEDN--EYTAREGAKFPIKWTAPEAINYGTFTIK 190
Query: 572 CDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDVQGK 626
DV+SF +L E++ G+ +P P + N + + L+ R+ P P+ +
Sbjct: 191 SDVWSFGILLTEIVTHGR---------IPYPGMTNPEVIQNLERGYRMVRPDNCPE---E 238
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQL 655
L +M C PE RPT + L
Sbjct: 239 LYQLM---RLCWKERPEDRPTFDYLRSVL 264
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 3e-19
Identities = 60/266 (22%), Positives = 104/266 (39%), Gaps = 59/266 (22%)
Query: 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G G G V+ +A+K + F E + + K+RH +V+ Y
Sbjct: 191 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-----SPEAFLQEAQVMKKLRHEKLVQLY 245
Query: 488 GFCSHARHSILIYEYLKRGSLATNL-SNDAAAEEL------------------------- 521
S I + EY+ +GSL L L
Sbjct: 246 AVVSEEPIYI-VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHR 304
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAP---DYRK---KC 572
D+ + N+L+ V+DFG+A+ ++ + ++A G ++ AP Y + K
Sbjct: 305 DLRAANILVGENLVCKVADFGLARLIEDNE--YTARQGAKFPIKWTAPEAALYGRFTIKS 362
Query: 573 DVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLIS 629
DV+SF +L E+ KG+ +P P ++N + + ++ R+P P P+ L
Sbjct: 363 DVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERGYRMPCP-PECPESLHD 412
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+M C PE RPT + + L
Sbjct: 413 LM---CQCWRKEPEERPTFEYLQAFL 435
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 3e-19
Identities = 61/269 (22%), Positives = 106/269 (39%), Gaps = 58/269 (21%)
Query: 429 IGSGRHGSVYRAEL-----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
IG+G G VY+ L + +A+K + Q + +F E + + H NI
Sbjct: 52 IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQ---RVDFLGEAGIMGQFSHHNI 108
Query: 484 VKFYGFCSHARHSILIYEYLKRGSLAT---------------NLSNDAAA-----EEL-- 521
++ G S + ++I EY++ G+L + AA +
Sbjct: 109 IRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNY 168
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAPD---YRK-- 570
D++++N+L++ VSDFG+++ L+ D G R+ AP+ YRK
Sbjct: 169 VHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFT 228
Query: 571 -KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGK 626
DV+SF ++ EV+ G+ P + N + + ++ RLP P D
Sbjct: 229 SASDVWSFGIVMWEVMTYGE---------RPYWELSNHEVMKAINDGFRLPTP-MDCPSA 278
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ +M C RP I L
Sbjct: 279 IYQLMM---QCWQQERARRPKFADIVSIL 304
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 4e-19
Identities = 62/272 (22%), Positives = 107/272 (39%), Gaps = 75/272 (27%)
Query: 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G V + + +AVK + +D A + F AE +T++RH N+V+
Sbjct: 200 TIGKGEFGDVMLGDYRGNK-VAVKC----IKND--ATAQAFLAEASVMTQLRHSNLVQLL 252
Query: 488 GFCSHARHSI-LIYEYLKRGSLATNL----------------SNDAAA-----EEL---- 521
G + + ++ EY+ +GSL L S D E
Sbjct: 253 GVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVH 312
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN------WSALVGTYRYVAP---DYRK- 570
D++++NVL+ ++ A VSDFG+ K W+ AP +K
Sbjct: 313 RDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWT---------APEALREKKF 363
Query: 571 --KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDV 623
K DV+SF +L E+ G+ +P P + + ++ ++ P P
Sbjct: 364 STKSDVWSFGILLWEIYSFGR---------VPYPRIPLKDVVPRVEKGYKMDAPDGCPP- 413
Query: 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ +M +C + +RPT + +QL
Sbjct: 414 --AVYDVM---KNCWHLDAATRPTFLQLREQL 440
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 5e-19
Identities = 61/271 (22%), Positives = 103/271 (38%), Gaps = 75/271 (27%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IG G G V + + +AVK + A + F AE +T++RH N+V+ G
Sbjct: 29 IGKGEFGDVMLGDYRGNK-VAVKCIKND------ATAQAFLAEASVMTQLRHSNLVQLLG 81
Query: 489 FCSHARHSILI-YEYLKRGSLATNL----------------SNDAAA-----EEL----- 521
+ + I EY+ +GSL L S D E
Sbjct: 82 VIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHR 141
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN------WSALVGTYRYVAP---DYRK-- 570
D++++NVL+ ++ A VSDFG+ K W+ AP +K
Sbjct: 142 DLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWT---------APEALREKKFS 192
Query: 571 -KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDVQ 624
K DV+SF +L E+ G+ P P + + ++ ++ P P
Sbjct: 193 TKSDVWSFGILLWEIYSFGRV---------PYPRIPLKDVVPRVEKGYKMDAPDGCPP-- 241
Query: 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ +M+ +C + RP+ + +QL
Sbjct: 242 -AVYEVMK---NCWHLDAAMRPSFLQLREQL 268
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 5e-19
Identities = 53/280 (18%), Positives = 93/280 (33%), Gaps = 73/280 (26%)
Query: 422 DFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFA----EIEALTK 477
F K +G G G++ + +AVK+ E F+ E++ L +
Sbjct: 25 SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRIL-----------PECFSFADREVQLLRE 73
Query: 478 I-RHRNIVKFYGFCSHARHSILIYEYLKRGSLA-------TNLSNDAAAEEL-------- 521
H N+++++ + + E +L L
Sbjct: 74 SDEHPNVIRYFCTEKDRQFQYIAIELC-AATLQEYVEQKDFAHLGLEPITLLQQTTSGLA 132
Query: 522 ----------DISSKNVLL-----DLEHKAHVSDFGIAKFLKPDSS---NWSALVGTYRY 563
D+ N+L+ + KA +SDFG+ K L S + GT +
Sbjct: 133 HLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGW 192
Query: 564 VAP---------DYRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEM-L 612
+AP + D++S + VI +G HP G N+ L L
Sbjct: 193 IAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGK-----SLQRQANILLGACSL 247
Query: 613 DPRLPPPSPDVQGK-LISIMEVAFSCLDVSPESRPTMQTI 651
D P DV + LI + + P+ RP+ + +
Sbjct: 248 DCLHPEKHEDVIARELIE------KMIAMDPQKRPSAKHV 281
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 6e-19
Identities = 72/271 (26%), Positives = 117/271 (43%), Gaps = 61/271 (22%)
Query: 423 FDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
FD +G G +GSVY+A + + +A+K+ + +E EI + +
Sbjct: 31 FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVP---VESDL---QEIIKEISIMQQCDSP 84
Query: 482 NIVKFYGFCSHARHSIL--IYEYLKRGSLA-------TNLSNDAAA----EEL------- 521
++VK+YG S+ +++ L + EY GS++ L+ D A L
Sbjct: 85 HVVKYYG--SYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLH 142
Query: 522 -------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DY 568
DI + N+LL+ E A ++DFG+A L + + ++GT ++AP Y
Sbjct: 143 FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY 202
Query: 569 RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR-LDEMLDPRLPPPSPDVQGKL 627
D++S + A+E+ +GK P + I P MR + + P PPP+
Sbjct: 203 NCVADIWSLGITAIEMAEGKPPY---ADIHP------MRAI--FMIPTNPPPTFRKPELW 251
Query: 628 ISIMEVAF--SCLDVSPESRPTMQTITQQLL 656
S F CL SPE R T QLL
Sbjct: 252 -SDNFTDFVKQCLVKSPEQRAT----ATQLL 277
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 8e-19
Identities = 47/295 (15%), Positives = 95/295 (32%), Gaps = 82/295 (27%)
Query: 418 RAINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
R +F IGSG GSV++ + A+K+ S P D++ E+ A
Sbjct: 8 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKR--SKKPLAGSVDEQNALREVYAHA 65
Query: 477 KI-RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE--------------- 520
+ +H ++V+++ + H ++ EY GSLA +S +
Sbjct: 66 VLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVG 125
Query: 521 -------------LDISSKNVLLDLEHKAHVS-------------------DFGIAKFLK 548
+DI N+ + + + D G +
Sbjct: 126 RGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRI- 184
Query: 549 PDSSNWSALVGTYRYVAP-------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSP 601
S+ G R++A + K D+++ + + + P
Sbjct: 185 ---SSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPL----------P 231
Query: 602 SVINM--RLDEMLDPRLPPP-SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
+ + + PR+P S + +L+ + PE RP+ + +
Sbjct: 232 RNGDQWHEIRQGRLPRIPQVLSQEFT-ELLK------VMIHPDPERRPSAMALVK 279
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 9e-19
Identities = 59/266 (22%), Positives = 104/266 (39%), Gaps = 59/266 (22%)
Query: 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G G G V+ +A+K + F E + + K+RH +V+ Y
Sbjct: 274 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-----SPEAFLQEAQVMKKLRHEKLVQLY 328
Query: 488 GFCSHARHSILIYEYLKRGSLATNL-SNDAAAEEL------------------------- 521
S ++ EY+ +GSL L L
Sbjct: 329 AVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHR 387
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---YRYVAP---DYRK---KC 572
D+ + N+L+ V+DFG+A+ ++ + ++A G ++ AP Y + K
Sbjct: 388 DLRAANILVGENLVCKVADFGLARLIEDNE--YTARQGAKFPIKWTAPEAALYGRFTIKS 445
Query: 573 DVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLIS 629
DV+SF +L E+ KG+ +P P ++N + + ++ R+P P P+ L
Sbjct: 446 DVWSFGILLTELTTKGR---------VPYPGMVNREVLDQVERGYRMPCP-PECPESLHD 495
Query: 630 IMEVAFSCLDVSPESRPTMQTITQQL 655
+M C PE RPT + + L
Sbjct: 496 LM---CQCWRKEPEERPTFEYLQAFL 518
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 66/266 (24%), Positives = 108/266 (40%), Gaps = 52/266 (19%)
Query: 420 INDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFN-SPLPSDQIADQKEFFAEIEALTK 477
+ DF+ +G G+ G+VY A E SK LA+K + L + Q E+E +
Sbjct: 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQ--LRREVEIQSH 65
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAA---EEL------- 521
+RH NI++ YG+ A LI EY G++ + A EL
Sbjct: 66 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 125
Query: 522 --------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------D 567
DI +N+LL + ++DFG + SS + L GT Y+ P
Sbjct: 126 HSKRVIHRDIKPENLLLGSAGELKIADFGWSV--HAPSSRRTDLCGTLDYLPPEMIEGRM 183
Query: 568 YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM-RLDEMLDPRLPPP-SPDVQG 625
+ +K D++S VL E + GK P F + + + ++ P + +
Sbjct: 184 HDEKVDLWSLGVLCYEFLVGKPP--F-----EANTYQETYKRISRVEFTFPDFVTEGAR- 235
Query: 626 KLISIMEVAFSCLDVSPESRPTMQTI 651
LIS + L +P RP ++ +
Sbjct: 236 DLISRL------LKHNPSQRPMLREV 255
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 2e-18
Identities = 48/181 (26%), Positives = 70/181 (38%), Gaps = 8/181 (4%)
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNN 181
+ + L N + Y LT L++ G P L TL++S N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQ 88
Query: 182 ITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKE-FGKLNSLTKLILRGNQLIGHLPSEI-G 239
+ S+PL L L D+S N + +P L L +L L+GN+L LP +
Sbjct: 89 LQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL-KTLPPGLLT 145
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
KLE L+L+ N + L L L L L L + + +PK L L
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHG 204
Query: 300 N 300
N
Sbjct: 205 N 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 6e-18
Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 7/162 (4%)
Query: 143 GIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLS 202
+ + T L +S+N + + +L+ LN+ +T + ++ G L L DLS
Sbjct: 28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLS 85
Query: 203 LNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPES 261
N + +P L +LT L + N+ + LP L +L+ L L N +L P
Sbjct: 86 HNQLQ-SLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 262 LGNLLKLHYLDLSKYQFIQELPKEL-GKLVQLSELELSHNFL 302
L KL L L+ + ELP L L L L L N L
Sbjct: 144 LTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSL 184
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 2e-15
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 172 LSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLI 231
+ L++S N + + + L + +L + K+ G L L L L NQL
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQ-VDGTLPVLGTLDLSHNQL- 89
Query: 232 GHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL-GKLV 290
LP +L L L++S NR +SL +L L +L L L + ++ LP L
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTP 148
Query: 291 QLSELELSHNFLGREIPS 308
+L +L L++N L E+P+
Sbjct: 149 KLEKLSLANNNL-TELPA 165
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 2e-12
Identities = 42/159 (26%), Positives = 60/159 (37%), Gaps = 9/159 (5%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
T L +L+L LT L L L L L NQ + SLP L +L L +
Sbjct: 53 PYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109
Query: 61 NNLSGSIPPSV-GNLM-LTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGPIPKC 117
N L+ S+P L L L L+ N L + LE++ + N+
Sbjct: 110 NRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDN 156
L NL + L+ N++ FG L F + N
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 6e-11
Identities = 52/251 (20%), Positives = 75/251 (29%), Gaps = 77/251 (30%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
+ LHL +N L L +L L + L G L L L L N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQ 88
Query: 63 LSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNC 121
L S+P L LTVL + N T +L LR
Sbjct: 89 LQ-SLPLLGQTLPALTVLDVSFNRLT-----------SLP-------------LGALRGL 123
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNN 181
L + L+GN ++ T+ G+ KL L+++ NN
Sbjct: 124 GELQELYLKGNELK-TLPP--GLLTPTP---------------------KLEKLSLANNN 159
Query: 182 ITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSL 241
+T +P + L +L L+L+ N L +P
Sbjct: 160 LT-ELPAGL-----------------------LNGLENLDTLLLQENSL-YTIPKGFFGS 194
Query: 242 TKLEFLNLSTN 252
L F L N
Sbjct: 195 HLLPFAFLHGN 205
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 63/296 (21%), Positives = 113/296 (38%), Gaps = 67/296 (22%)
Query: 406 SFKGKFDYVEIIRAIN---DFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQ 461
S + +Y + R ++ ++ +G G G VY+A + A K S++
Sbjct: 1 SMRKSREYEHVRRDLDPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVI--ETKSEE 58
Query: 462 IADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL--IYEYLKRGSLA-------TNL 512
+ +++ EIE L H IVK G ++ L + E+ G++ L
Sbjct: 59 --ELEDYIVEIEILATCDHPYIVKLLG--AYYHDGKLWIMIEFCPGGAVDAIMLELDRGL 114
Query: 513 SNDAAA----EEL--------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554
+ + L D+ + NVL+ LE ++DFG++
Sbjct: 115 TEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKR 174
Query: 555 SALVGTYRYVAP-----------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV 603
+ +GT ++AP Y K D++S + +E+ + + P + P
Sbjct: 175 DSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPH---HELNP---- 227
Query: 604 INMR-LDEMLDPRLPPPSPDVQGKLISIMEVAF--SCLDVSPESRPTMQTITQQLL 656
MR L + + PP+ K S+ F LD +PE+RP+ QLL
Sbjct: 228 --MRVL--LKIAKSDPPTLLTPSKW-SVEFRDFLKIALDKNPETRPS----AAQLL 274
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 3e-18
Identities = 35/199 (17%), Positives = 72/199 (36%), Gaps = 11/199 (5%)
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNW-GKCPKLSTLNVSMN 180
P+ + L ++R S AF N++ + +S + ++ S+ K++ + +
Sbjct: 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 181 NITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKE--FGKLNSLTKLILRGNQLIGHLPSE 237
I + L L + + P + L + N + +P
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149
Query: 238 I-GSLTK-LEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL--GKLVQLS 293
L L L N F+S + N KL + L+K +++ + K+ G S
Sbjct: 150 AFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208
Query: 294 ELELSHNFLGREIPSQICS 312
L++S + +PS+
Sbjct: 209 LLDVSQTSV-TALPSKGLE 226
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 7e-15
Identities = 40/280 (14%), Positives = 85/280 (30%), Gaps = 63/280 (22%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFEN 61
+ + + IP+ S L L R ++PS NL ++ +++ +
Sbjct: 11 HQEEDFRVTCKDIQR-IPS---LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSID 65
Query: 62 NLSGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
+ +T + + N + P L+
Sbjct: 66 VTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-----------------------PDALK 102
Query: 120 NCPNLVRISLEGNNMRGTISE--AFGIYLNLTFLDISDNNFFGEIASN--WGKCPKLSTL 175
P L + + ++ + L+I+DN + I N G C + TL
Sbjct: 103 ELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL 161
Query: 176 NVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLP 235
+ N T S+ F+ + L + L N+ + +
Sbjct: 162 KLYNNGFT-SVQGYA--------FNGT----------------KLDAVYLNKNKYLTVID 196
Query: 236 SEI--GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDL 273
+ G + L++S ++L + L +L +L +
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-11
Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 11/166 (6%)
Query: 1 NLTNLRELHLRDNYLTGLIPTET-WNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFL 58
NL N+ +++ + + + + +NL + + + + + L L++L +
Sbjct: 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112
Query: 59 FENNLSGSIPPSV---GNLMLTVLALENNHFTGNLRHNICRN--GALERVIVGGNHFRGP 113
F L P + +L + +N + ++ N + + + N F
Sbjct: 113 FNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS- 170
Query: 114 IPKCLRNCPNLVRISLEGNNMRGTISE-AF-GIYLNLTFLDISDNN 157
+ N L + L N I + AF G+Y + LD+S +
Sbjct: 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 7e-04
Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 241 LTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL-GKLVQLSELELSH 299
+ L L ++ + NL + + +S +Q+L L +++ +E+ +
Sbjct: 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 300 NFLGREIPS 308
I
Sbjct: 90 TRNLTYIDP 98
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 1e-17
Identities = 56/270 (20%), Positives = 98/270 (36%), Gaps = 64/270 (23%)
Query: 429 IGSGRHGSVYRAELPSKEFL----AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G G G VY + + AVK + ++++F +E + + H +IV
Sbjct: 20 LGEGFFGEVYEGVYTNHKGEKINVAVKTCK---KDCTLDNKEKFMSEAVIMKNLDHPHIV 76
Query: 485 KFYGFCSHARHSILI-YEYLKRGSLAT---------------NLSNDAAA-----EEL-- 521
K G I E G L S E +
Sbjct: 77 KLIGIIE--EEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINC 134
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP---DYRK--- 570
DI+ +N+L+ + DFG++++++ D + A V ++++P ++R+
Sbjct: 135 VHRDIAVRNILVASPECVKLGDFGLSRYIE-DEDYYKASVTRLPIKWMSPESINFRRFTT 193
Query: 571 KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDVQG 625
DV+ F V E++ GK P + N + +L+ RLP P P
Sbjct: 194 ASDVWMFAVCMWEILSFGKQ---------PFFWLENKDVIGVLEKGDRLPKPDLCPP--- 241
Query: 626 KLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L ++M C D P RP + L
Sbjct: 242 VLYTLMT---RCWDYDPSDRPRFTELVCSL 268
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 1e-17
Identities = 46/314 (14%), Positives = 83/314 (26%), Gaps = 84/314 (26%)
Query: 421 NDFDAKYCIGSGRH--GSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
++ IG G +V A P+ E++ V++ N L + E+
Sbjct: 25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRIN--LEACSNEMVTFLQGELHVSKL 82
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYLKRGSLA---TNLSNDAAAEEL------------- 521
H NIV + ++ ++ GS D E
Sbjct: 83 FNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALD 142
Query: 522 ----------DISSKNVLLDLEHKAHVSDFGIAKFL-------KPDSSNWSALVGTYRYV 564
+ + ++L+ ++ K ++S + + V ++
Sbjct: 143 YIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWL 202
Query: 565 AP--------DYRKKCDVYSFRVLALEVIKGK------HP-------------------R 591
+P Y K D+YS + A E+ G
Sbjct: 203 SPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTST 262
Query: 592 GFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFS---------CLDVSP 642
+ SPS P P FS CL +P
Sbjct: 263 IPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNP 322
Query: 643 ESRPTMQTITQQLL 656
++RP+ LL
Sbjct: 323 DARPS----ASTLL 332
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 2e-17
Identities = 61/299 (20%), Positives = 109/299 (36%), Gaps = 51/299 (17%)
Query: 385 DQANREGQRSPQNSQGLLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAEL-P 443
++ + Q+ + + L+ K K ++ +DF+ +G+G G V++ P
Sbjct: 5 EELELDEQQRKRLE----AFLTQKQKVGELKD----DDFEKISELGAGNGGVVFKVSHKP 56
Query: 444 SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG-FCSHARHSILIYEY 502
S +A K L A + + E++ L + IV FYG F S SI + E+
Sbjct: 57 SGLVMARKLI--HLEIKP-AIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM-EH 112
Query: 503 LKRGSLATNLSNDAAAEEL-------------------------DISSKNVLLDLEHKAH 537
+ GSL L E D+ N+L++ +
Sbjct: 113 MDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIK 172
Query: 538 VSDFGIAKFLKPDSSNWSALVGTYRYVAP------DYRKKCDVYSFRVLALEVIKGKHP- 590
+ DFG++ L S ++ VGT Y++P Y + D++S + +E+ G++P
Sbjct: 173 LCDFGVSGQL--IDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI 230
Query: 591 ---RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRP 646
++ V + PR P + G F LD P
Sbjct: 231 PPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPP 289
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 52/285 (18%), Positives = 92/285 (32%), Gaps = 64/285 (22%)
Query: 422 DFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
+ +G G V E L F A+K+ + D++E E + H
Sbjct: 30 HYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH----EQQDREEAQREADMHRLFNH 85
Query: 481 RNIVKFYGFCSHARHS----ILIYEYLKRGSLATNLSNDAAAEEL--------------- 521
NI++ +C R + L+ + KRG+L +
Sbjct: 86 PNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICR 145
Query: 522 -------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN---------WSALVG 559
D+ N+LL E + + D G W+A
Sbjct: 146 GLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRC 205
Query: 560 TYRYVAP---------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDE 610
T Y AP ++ DV+S + ++ G+ P + SV ++
Sbjct: 206 TISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGP--YDMVFQKGDSVALAVQNQ 263
Query: 611 MLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ P+ P S + +L++ M + V P RP + + QL
Sbjct: 264 LSIPQSPRHSSALW-QLLNSM------MTVDPHQRPHIPLLLSQL 301
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 49/274 (17%), Positives = 92/274 (33%), Gaps = 41/274 (14%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+ +L+ +T + L S+ ++ + + S+ + L ++ LFL
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N L+ I P L L L+ N + L++
Sbjct: 78 NKLT-DIKPLANLKNLGWLFLDENKVK---------------DLSS-----------LKD 110
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
L +SLE N + I L L + +N + + KL TL++ N
Sbjct: 111 LKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDN 166
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240
I+ +PL L+ L LS NHI + L +L L L + + + +
Sbjct: 167 QISDIVPLA--GLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSN 222
Query: 241 LTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
L + + + PE + + ++
Sbjct: 223 LVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVK 254
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 49/206 (23%), Positives = 82/206 (39%), Gaps = 17/206 (8%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L N+ +L L N LT + P NLK+L L L N+ + L SS+ +L L+ L L
Sbjct: 66 YLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEH 121
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N +S I V L L L NN T ++ + R L+ + + N +P L
Sbjct: 122 NGIS-DINGLVHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQISDIVP--LAG 176
Query: 121 CPNLVRISLEGNNMRGTIS--EAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVS 178
L + L N+ IS A NL L++ + ++ +T+
Sbjct: 177 LTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK-- 230
Query: 179 MNNITRSIPLEIGNLSTLNEFDLSLN 204
+ + P I + + ++ +
Sbjct: 231 NTDGSLVTPEIISDDGDYEKPNVKWH 256
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 53/269 (19%), Positives = 101/269 (37%), Gaps = 60/269 (22%)
Query: 429 IGSGRHGSVYRAELPSKEF-----LAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+GSG G+VY+ + +A+K+ + KE E + + + ++
Sbjct: 23 LGSGAFGTVYKGLWIPEGEKVKIPVAIKELR---EATSPKANKEILDEAYVMASVDNPHV 79
Query: 484 VKFYGFCSHARHSI-LIYEYLKRGSLAT---------------NLSNDAAA-----EEL- 521
+ G C ++ LI + + G L N A E+
Sbjct: 80 CRLLGICL--TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRR 137
Query: 522 ----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP---DYRK-- 570
D++++NVL+ ++DFG+AK L + + A G +++A +R
Sbjct: 138 LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYT 197
Query: 571 -KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGK 626
+ DV+S+ V E++ G P + + +L+ RLP P P
Sbjct: 198 HQSDVWSYGVTVWELMTFGSK---------PYDGIPASEISSILEKGERLPQP-PICTID 247
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ IM C + +SRP + + +
Sbjct: 248 VYMIM---VKCWMIDADSRPKFRELIIEF 273
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 69/286 (24%), Positives = 113/286 (39%), Gaps = 74/286 (25%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI- 478
F+ +G+G +G VY+ + + + A+K + + D +++E EI L K
Sbjct: 24 GIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMD--VTGD---EEEEIKQEINMLKKYS 78
Query: 479 RHRNIVKFYGFCSHARHSI--------LIYEYLKRGSLAT---NLSNDAAAEEL------ 521
HRNI +YG + + + L+ E+ GS+ N + EE
Sbjct: 79 HHRNIATYYG--AFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICR 136
Query: 522 -----------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYV 564
DI +NVLL + + DFG++ L + +GT ++
Sbjct: 137 EILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWM 196
Query: 565 AP-----------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR-LDEML 612
AP Y K D++S + A+E+ +G P + P MR L L
Sbjct: 197 APEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPL---CDMHP------MRAL--FL 245
Query: 613 DPRLPPPSPDVQGKLISIMEVAF--SCLDVSPESRPTMQTITQQLL 656
PR P P ++ K S +F SCL + RP T+QL+
Sbjct: 246 IPRNPAPR--LKSKKWSKKFQSFIESCLVKNHSQRPA----TEQLM 285
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 4e-17
Identities = 68/368 (18%), Positives = 114/368 (30%), Gaps = 55/368 (14%)
Query: 1 NLTNLRELHLRDNYLTG-----LIPTETWNLKSLVKLGLGGNQFR----GSLPSSVGNLS 51
L EL+LR N L ++ + KL L G L S++ L
Sbjct: 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP 113
Query: 52 SLRYLFLFENNLSGSIPPSVGNLM------LTVLALENNHFT----GNLRHNICRNGALE 101
+L+ L L +N L + + + L L LE + L + +
Sbjct: 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173
Query: 102 RVIVGGNHFRGP----IPKCLRNCP-NLVRISLEGNNMR----GTISEAFGIYLNLTFLD 152
+ V N + + L++ P L + LE + + +L L
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233
Query: 153 ISDNNFFGE----IASNWGKC-PKLSTLNVSMNNIT----RSIPLEIGNLSTLNEFDLSL 203
+ N + +L TL + IT + + +L E L+
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293
Query: 204 NHI----VGKIPKEFGKLN-SLTKLILRGNQL----IGHLPSEIGSLTKLEFLNLSTNRF 254
N + + + + L L ++ H S + L L +S NR
Sbjct: 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353
Query: 255 S----SLIPESLGNLL-KLHYLDLSKYQF----IQELPKELGKLVQLSELELSHNFLGRE 305
+ + LG L L L+ L L L EL+LS+N LG
Sbjct: 354 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413
Query: 306 IPSQICSM 313
Q+
Sbjct: 414 GILQLVES 421
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 57/337 (16%), Positives = 99/337 (29%), Gaps = 78/337 (23%)
Query: 3 TNLRELHLRDNYLTG-----LIPTETWNLKSLVKLGLGGNQFR----GSLPSSVGNLSSL 53
+++ L ++ L+ L+P L+ + L + S++ +L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPL----LQQCQVVRLDDCGLTEARCKDISSALRVNPAL 58
Query: 54 RYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGP 113
L L N L V + L+ C+ L
Sbjct: 59 AELNLRSNELGDV----------GVHCV-----LQGLQTPSCKIQKL------------- 90
Query: 114 IPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGK----- 168
L+NC ++ G G +S L L +SDN +
Sbjct: 91 ---SLQNC----CLTGAGC---GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP 140
Query: 169 CPKLSTLNVSMNNIT----RSIPLEIGNLSTLNEFDLSLNHI----VGKIPKEFGKLN-S 219
+L L + +++ + + E +S N I V + +
Sbjct: 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200
Query: 220 LTKLILRGNQL----IGHLPSEIGSLTKLEFLNLSTNRFS-----SLIPESLGNLLKLHY 270
L L L + L + S L L L +N+ L P L +L
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260
Query: 271 LDLSKYQF----IQELPKELGKLVQLSELELSHNFLG 303
L + + +L + L L EL L+ N LG
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 36/191 (18%), Positives = 63/191 (32%), Gaps = 23/191 (12%)
Query: 146 LNLTFLDISDNNFFGEIASNWGKC-PKLSTLNVSMNNIT----RSIPLEIGNLSTLNEFD 200
L++ LDI + + + + +T + I + L E +
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 201 LSLNHI----VGKIPKEFGKLN-SLTKLILRGNQL----IGHLPSEIGSLTKLEFLNLST 251
L N + V + + + + KL L+ L G L S + +L L+ L+LS
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 252 NRFSSLIPESLGNLL-----KLHYLDLSKYQF----IQELPKELGKLVQLSELELSHNFL 302
N + L L +L L L + L L EL +S+N +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
Query: 303 GREIPSQICSM 313
+C
Sbjct: 183 NEAGVRVLCQG 193
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 61/349 (17%), Positives = 98/349 (28%), Gaps = 85/349 (24%)
Query: 1 NLTNLRELHLRDNYLTG-----LIPTETWNLKSLVKLGLGGNQFR----GSLPSSVGNLS 51
L L+ELHL DN L L L KL L L S +
Sbjct: 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 170
Query: 52 SLRYLFLFENNLSGSIPPSVG------NLMLTVLALENNHFTG----------------- 88
+ L + N+++ + + L L LE+ T
Sbjct: 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230
Query: 89 --NLRHN--------------ICRNGALERVIVGGNHFRGP----IPKCLRNCPNLVRIS 128
L N + + L + + + + LR +L +S
Sbjct: 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290
Query: 129 LEGNNMRGT----ISEAFGIY-LNLTFLDISDNNF----FGEIASNWGKCPKLSTLNVSM 179
L GN + + E L L + +F +S + L L +S
Sbjct: 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350
Query: 180 NNITRSIPLEIG-----NLSTLNEFDLSLNHI----VGKIPKEFGKLNSLTKLILRGNQL 230
N + + E+ S L L+ + + +SL +L L N L
Sbjct: 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410
Query: 231 IGHLPSEIG----------SLTKLEFLNLSTNRFSSLIPESLGNLLKLH 269
+ G LE L L +S + + L L K
Sbjct: 411 -----GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 454
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 7e-17
Identities = 59/268 (22%), Positives = 104/268 (38%), Gaps = 60/268 (22%)
Query: 429 IGSGRHGSVYRAELPSKEFL----AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G+ G V++ S E A+K + +++F E + + H +IV
Sbjct: 23 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSV---REKFLQEALTMRQFDHPHIV 79
Query: 485 KFYGFCSHARHSILI-YEYLKRGSLAT---------------NLSNDAAA-----EEL-- 521
K G + + + I E G L + + + E
Sbjct: 80 KLIGVIT--ENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRF 137
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP---DYRK--- 570
DI+++NVL+ + DFG++++++ DS+ + A G +++AP ++R+
Sbjct: 138 VHRDIAARNVLVSSNDCVKLGDFGLSRYME-DSTYYKASKGKLPIKWMAPESINFRRFTS 196
Query: 571 KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKL 627
DV+ F V E++ G P V N + ++ RLP P P+ L
Sbjct: 197 ASDVWMFGVCMWEILMHGV---------KPFQGVKNNDVIGRIENGERLPMP-PNCPPTL 246
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQQL 655
S+M C P RP + QL
Sbjct: 247 YSLMT---KCWAYDPSRRPRFTELKAQL 271
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 8e-17
Identities = 53/278 (19%), Positives = 91/278 (32%), Gaps = 60/278 (21%)
Query: 420 INDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK- 477
IND + +GSG G V++ + +AVK+ + + K +++ + K
Sbjct: 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKE---ENKRILMDLDVVLKS 80
Query: 478 IRHRNIVKFYG-FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------------- 521
IV+ +G F ++ I + E + + E
Sbjct: 81 HDCPYIVQCFGTFITNTDVFIAM-ELMGTCAEKLKKRMQGPIPERILGKMTVAIVKALYY 139
Query: 522 ----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP----- 566
D+ N+LLD + + DFGI+ L D G Y+AP
Sbjct: 140 LKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLV-DDKAKDRSAGCAAYMAPERIDP 198
Query: 567 ------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620
DY + DV+S + +E+ G+ P + + + + PP
Sbjct: 199 PDPTKPDYDIRADVWSLGISLVELATGQFP-------YKNCKTD-FEVLTKV-LQEEPPL 249
Query: 621 PDVQGKLISIMEVAF--SCLDVSPESRPTMQTITQQLL 656
S +F CL RP +LL
Sbjct: 250 LPGHMGF-SGDFQSFVKDCLTKDHRKRPK----YNKLL 282
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 61/273 (22%), Positives = 102/273 (37%), Gaps = 63/273 (23%)
Query: 423 FDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR 481
F IG G G+VY A ++ + E +A+KK + ++ E+ L K+RH
Sbjct: 56 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNE-KWQDIIKEVRFLQKLRHP 114
Query: 482 NIVKFYGFCSHARHSIL--IYEYLKRGSLATNLSNDAAAEEL------------------ 521
N +++ G + R + EY + + +E+
Sbjct: 115 NTIQYRG--CYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHS 172
Query: 522 ------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP--------- 566
D+ + N+LL + DFG A + P +S VGT ++AP
Sbjct: 173 HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANS----FVGTPYWMAPEVILAMDEG 228
Query: 567 DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR-LDEMLDPRLPPPSPDVQG 625
Y K DV+S + +E+ + K P ++ M L + P+ +Q
Sbjct: 229 QYDGKVDVWSLGITCIELAERKPPL---FNMNA------MSAL--YHIAQNESPA--LQS 275
Query: 626 KLISIMEVAF--SCLDVSPESRPTMQTITQQLL 656
S F SCL P+ RPT ++ LL
Sbjct: 276 GHWSEYFRNFVDSCLQKIPQDRPT----SEVLL 304
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 55/271 (20%), Positives = 98/271 (36%), Gaps = 64/271 (23%)
Query: 429 IGSGRHGSVYRAEL-----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+GSG G+V++ K + +K Q + + A+ + H +I
Sbjct: 21 LGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDK-SGRQ--SFQAVTDHMLAIGSLDHAHI 77
Query: 484 VKFYGFCSHARHSI-LIYEYLKRGSLAT---------------NLSNDAAA-----EEL- 521
V+ G C S+ L+ +YL GSL N A EE
Sbjct: 78 VRLLGLCP--GSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHG 135
Query: 522 ----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAP---DYRK-- 570
+++++NVLL + V+DFG+A L PD +++A + K
Sbjct: 136 MVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYT 195
Query: 571 -KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDVQ 624
+ DV+S+ V E++ G P + + ++L+ RL P
Sbjct: 196 HQSDVWSYGVTVWELMTFGAE---------PYAGLRLAEVPDLLEKGERLAQPQICTI-- 244
Query: 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ +M C + RPT + + +
Sbjct: 245 -DVYMVM---VKCWMIDENIRPTFKELANEF 271
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 51/258 (19%), Positives = 83/258 (32%), Gaps = 59/258 (22%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFEN 61
+ + L L N L L ++ L L L + + ++ +LS L L L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86
Query: 62 NLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNC 121
+ S+
Sbjct: 87 PIQ-SLALGA----------------------------------------------FSGL 99
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNF-FGEIASNWGKCPKLSTLNVSMN 180
+L ++ N+ + G L L+++ N ++ + L L++S N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Query: 181 NITRSIPLEI----GNLSTLN-EFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLP 235
I SI + LN DLSLN + P F ++ L +L L NQL +P
Sbjct: 160 KIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQL-KSVP 216
Query: 236 SEI-GSLTKLEFLNLSTN 252
I LT L+ + L TN
Sbjct: 217 DGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 11/196 (5%)
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNN 181
+ + L N +R S +F + L LD+S + LSTL ++ N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 182 ITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSE--I 238
I S+ L LS+L + ++ G L +L +L + N I
Sbjct: 88 IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYF 145
Query: 239 GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHY----LDLSKYQFIQELPKELGKLVQLSE 294
+LT LE L+LS+N+ S+ L L ++ LDLS + + K ++L E
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKE 204
Query: 295 LELSHNFLGREIPSQI 310
L L N L + +P I
Sbjct: 205 LALDTNQL-KSVPDGI 219
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 46/211 (21%), Positives = 74/211 (35%), Gaps = 33/211 (15%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
+ L+ L L + + +L L L L GN + SL LSSL+ L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAV 108
Query: 60 ENNLSGSIPPSV-GNLM-LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKC 117
E NL+ S+ G+L L L + +N +P+
Sbjct: 109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQ-----------------------SFKLPEY 144
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDIS---DNNFFGEIASNWGKCPKLST 174
N NL + L N ++ + + L++S N I K +L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE 204
Query: 175 LNVSMNNITRSIPLEI-GNLSTLNEFDLSLN 204
L + N + S+P I L++L + L N
Sbjct: 205 LALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 3e-14
Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 14/177 (7%)
Query: 143 GIYLNLTFLDISDNNFFGEIASN-WGKCPKLSTLNVSMNNITRSIPLEI-GNLSTLNEFD 200
+ + LD+S N + S + P+L L++S I +I +LS L+
Sbjct: 25 NLPFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLI 82
Query: 201 LSLNHIVGKIPKE-FGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLI- 258
L+ N I + F L+SL KL+ L IG L L+ LN++ N S
Sbjct: 83 LTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 259 PESLGNLLKLHYLDLSKYQFIQELPKE-LGKLVQL----SELELSHNFLGREIPSQI 310
PE NL L +LDLS + IQ + L L Q+ L+LS N + I
Sbjct: 142 PEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGA 196
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 63/285 (22%), Positives = 99/285 (34%), Gaps = 80/285 (28%)
Query: 429 IGSGRHGSVYRAEL---PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIV 484
IG G G V +A + + A+K+ D D ++F E+E L K+ H NI+
Sbjct: 33 IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD---DHRDFAGELEVLCKLGHHPNII 89
Query: 485 KFYGFCSHARHSILIYEYLKRGSLATNL-------------SNDAAAEEL---------- 521
G C H + L EY G+L L ++ A L
Sbjct: 90 NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA 149
Query: 522 DI-------SSK----------NVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT---Y 561
D+ S K N+L+ + A ++DFG+++ +
Sbjct: 150 DVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR----GQEVYVKKTMGRLPV 205
Query: 562 RYVAP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP 614
R++A +Y DV+S+ VL E++ G P + L E L
Sbjct: 206 RWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGT---------PYCGMTCAELYEKLPQ 256
Query: 615 --RLPPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
RL P D ++ +M C P RP+ I L
Sbjct: 257 GYRLEKPLNCDD---EVYDLM---RQCWREKPYERPSFAQILVSL 295
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 5e-16
Identities = 64/286 (22%), Positives = 101/286 (35%), Gaps = 83/286 (29%)
Query: 429 IGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
+G G G VY ++ PS +AVK D+ +F E ++K H+N
Sbjct: 38 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLP---EVCSEQDELDFLMEALIISKFNHQN 94
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSLAT---------------------NLSNDAAA--- 518
IV+ G + ++ E + G L + +++ D A
Sbjct: 95 IVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQ 154
Query: 519 --EEL-----DISSKNVLLDLEHKAHV---SDFGIAKFLKPDSSNWSALVGTY------- 561
EE DI+++N LL V DFG+A+ + S Y
Sbjct: 155 YLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAS--------YYRKGGCAM 206
Query: 562 ---RYVAP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEM 611
+++ P K D +SF VL E+ G P PS N + E
Sbjct: 207 LPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYM---------PYPSKSNQEVLEF 257
Query: 612 LDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ R+ PP + G + IM C PE RP I +++
Sbjct: 258 VTSGGRMDPP-KNCPGPVYRIMT---QCWQHQPEDRPNFAIILERI 299
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 7e-16
Identities = 38/198 (19%), Positives = 64/198 (32%), Gaps = 43/198 (21%)
Query: 422 DFDAKY----CIGSGRHGSVYRA-ELPSKEFLAVKKFN-SPLPSDQIADQKEFFAEIEAL 475
F+ Y IG G V R + + AVK + + S ++ E
Sbjct: 21 LFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASIC 80
Query: 476 TKIRHRNIVKFYGFCSHARHSILIYEYL----------KRGSLATNLSNDAAAEEL---- 521
++H +IV+ S +++E++ KR S A+ +
Sbjct: 81 HMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQIL 140
Query: 522 --------------DISSKNVLLDLEHKAH---VSDFGIAKFLKPDSSNWSALVGTYRYV 564
D+ VLL + + + FG+A L VGT ++
Sbjct: 141 EALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFM 200
Query: 565 AP------DYRKKCDVYS 576
AP Y K DV+
Sbjct: 201 APEVVKREPYGKPVDVWG 218
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 1e-15
Identities = 59/274 (21%), Positives = 97/274 (35%), Gaps = 67/274 (24%)
Query: 429 IGSGRHGSVYRAELPSKE----FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L + AVK N +++ F E + H N++
Sbjct: 33 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQ---FLTEGIIMKDFSHPNVL 89
Query: 485 KFYGFCSHARHSIL-IYEYLKRGSLATNL---------------SNDAAA-----EEL-- 521
G C + S L + Y+K G L + A
Sbjct: 90 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKF 149
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY------RYVAP---DYR 569
D++++N +LD + V+DFG+A+ + + ++ +++A +
Sbjct: 150 VHRDLAARNCMLDEKFTVKVADFGLARDM--YDKEYYSVHNKTGAKLPVKWMALESLQTQ 207
Query: 570 K---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--P 621
K K DV+SF VL E++ +G P P V + L RL P P
Sbjct: 208 KFTTKSDVWSFGVLLWELMTRGAP---------PYPDVNTFDITVYLLQGRRLLQPEYCP 258
Query: 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
D L +M C E RP+ + ++
Sbjct: 259 D---PLYEVML---KCWHPKAEMRPSFSELVSRI 286
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 1e-15
Identities = 71/322 (22%), Positives = 110/322 (34%), Gaps = 89/322 (27%)
Query: 396 QNSQGLLSILS--FKGKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFL----A 449
+S GL+ S + K + V I R N +G G GSV L ++ A
Sbjct: 9 HHSSGLVPRGSEELQNKLEDVVIDR--NLLILGKILGEGEFGSVMEGNLKQEDGTSLKVA 66
Query: 450 VKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCS-----HARHSILIYEYLK 504
VK S + + +EF +E + H N+++ G C ++I ++K
Sbjct: 67 VKTMKLDNSSQR--EIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMK 124
Query: 505 RGSLATNLSNDAAAEE-------------LDISS-----------------KNVLLDLEH 534
G L T L +DI+ +N +L +
Sbjct: 125 YGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDM 184
Query: 535 KAHVSDFGIAKFLKPDSSNWSALVGTY----------RYVAP---DYRK---KCDVYSFR 578
V+DFG++K + Y +++A R K DV++F
Sbjct: 185 TVCVADFGLSKKIYSGD--------YYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFG 236
Query: 579 VLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDVQGKLISIMEV 633
V E+ +G P P V N + + L RL P D +L IM
Sbjct: 237 VTMWEIATRGMT---------PYPGVQNHEMYDYLLHGHRLKQPEDCLD---ELYEIMY- 283
Query: 634 AFSCLDVSPESRPTMQTITQQL 655
SC P RPT + QL
Sbjct: 284 --SCWRTDPLDRPTFSVLRLQL 303
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 64/286 (22%), Positives = 99/286 (34%), Gaps = 83/286 (29%)
Query: 429 IGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
+G G G VY ++ PS +AVK D+ +F E ++K H+N
Sbjct: 79 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLP---EVCSEQDELDFLMEALIISKFNHQN 135
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSLATNL---------------------SNDAAA--- 518
IV+ G + ++ E + G L + L + D A
Sbjct: 136 IVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQ 195
Query: 519 --EEL-----DISSKNVLLDLEHKAHV---SDFGIAKFLKPDSSNWSALVGTY------- 561
EE DI+++N LL V DFG+A+ + Y
Sbjct: 196 YLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAG--------YYRKGGCAM 247
Query: 562 ---RYVAP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEM 611
+++ P K D +SF VL E+ G P PS N + E
Sbjct: 248 LPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYM---------PYPSKSNQEVLEF 298
Query: 612 LDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ R+ PP + G + IM C PE RP I +++
Sbjct: 299 VTSGGRMDPP-KNCPGPVYRIMT---QCWQHQPEDRPNFAIILERI 340
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 68/265 (25%), Positives = 112/265 (42%), Gaps = 50/265 (18%)
Query: 420 INDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFN-SPLPSDQIADQKEFFAEIEALTK 477
I+DFD +G G+ G+VY A E +K +A+K S L + + Q EIE +
Sbjct: 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQ--LRREIEIQSH 70
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAA---EEL------- 521
+RH NI++ Y + + L+ E+ RG L +A EEL
Sbjct: 71 LRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYC 130
Query: 522 --------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------D 567
DI +N+L+ + + ++DFG + P + + GT Y+ P
Sbjct: 131 HERKVIHRDIKPENLLMGYKGELKIADFGWSV-HAPSLRRRT-MCGTLDYLPPEMIEGKT 188
Query: 568 YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP-PSPDVQGK 626
+ +K D++ VL E + G P F S PS + + R+ + D + PP S +
Sbjct: 189 HDEKVDLWCAGVLCYEFLVGMPP--FDS---PSHTETHRRIVNV-DLKFPPFLSDGSK-D 241
Query: 627 LISIMEVAFSCLDVSPESRPTMQTI 651
LIS + L P R ++ +
Sbjct: 242 LISKL------LRYHPPQRLPLKGV 260
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-15
Identities = 56/287 (19%), Positives = 96/287 (33%), Gaps = 63/287 (21%)
Query: 414 VEIIRAINDFDAKYCIGSGRHGSVYRAELPSKE----FLAVKKFNSPLPSDQIADQKEFF 469
V I + IG G G VY E + A+K + ++ + F
Sbjct: 14 VLIPHERVVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLS---RITEMQQVEAFL 70
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSIL-IYEYLKRGSLATNL---------------S 513
E + + H N++ G + Y+ G L +
Sbjct: 71 REGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFG 130
Query: 514 NDAAA-----EEL-----DISSKNVLLDLEHKAHVSDFGIAKFL-KPDSSNWSALVGT-- 560
A E D++++N +LD V+DFG+A+ + + +
Sbjct: 131 LQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARL 190
Query: 561 -YRYVAP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEML 612
++ A + K DV+SF VL E++ +G P + L L
Sbjct: 191 PVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGA---------PPYRHIDPFDLTHFL 241
Query: 613 DP--RLPPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
RLP P PD L +M+ C + P RPT + + ++
Sbjct: 242 AQGRRLPQPEYCPD---SLYQVMQ---QCWEADPAVRPTFRVLVGEV 282
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 62/273 (22%), Positives = 96/273 (35%), Gaps = 65/273 (23%)
Query: 429 IGSGRHGSVYRAELPSKE----FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L + AVK N + +F E + H N++
Sbjct: 97 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIG---EVSQFLTEGIIMKDFSHPNVL 153
Query: 485 KFYGFCSHARHSIL-IYEYLKRGSLATNL---------------SNDAAA-----EEL-- 521
G C + S L + Y+K G L + A
Sbjct: 154 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKF 213
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY-----RYVAP---DYRK 570
D++++N +LD + V+DFG+A+ + D S T +++A +K
Sbjct: 214 VHRDLAARNCMLDEKFTVKVADFGLARDMY-DKEFDSVHNKTGAKLPVKWMALESLQTQK 272
Query: 571 ---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PD 622
K DV+SF VL E++ +G P P V + L RL P PD
Sbjct: 273 FTTKSDVWSFGVLLWELMTRGAP---------PYPDVNTFDITVYLLQGRRLLQPEYCPD 323
Query: 623 VQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L +M C E RP+ + ++
Sbjct: 324 ---PLYEVML---KCWHPKAEMRPSFSELVSRI 350
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 4e-15
Identities = 60/333 (18%), Positives = 113/333 (33%), Gaps = 63/333 (18%)
Query: 367 HHPQSGCISVIAYVPIIWDQANREGQRSPQNSQGLLSILSFKGKFDYVEIIR-AINDFDA 425
HH ++ + + A + +R +S L + K E I +
Sbjct: 1 HHHHHHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKASSSANECISVKGRIYSI 60
Query: 426 KYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH--RNI 483
IGSG V++ K+ A+K N L + EI L K++ I
Sbjct: 61 LKQIGSGGSSKVFQVLNEKKQIYAIKYVN--LEEADNQTLDSYRNEIAYLNKLQQHSDKI 118
Query: 484 VKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL---------------------- 521
++ Y + ++ ++ E L + L + +
Sbjct: 119 IRLYDYEITDQYIYMVMEC-GNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIV 177
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAP----------- 566
D+ N L+ + + DFGIA ++PD+++ VG Y+ P
Sbjct: 178 HSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRE 236
Query: 567 ------DYRKKCDVYSFRVLALEVIKGKHP-RGFVSSILPSPSVINMRLDEMLDPRLPPP 619
K DV+S + + GK P + ++ I +L ++DP
Sbjct: 237 NGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQI--------SKLHAIIDPNHEIE 288
Query: 620 SPD-VQGKLISIMEVAFSCLDVSPESRPTMQTI 651
PD + L +++ CL P+ R ++ +
Sbjct: 289 FPDIPEKDLQDVLK---CCLKRDPKQRISIPEL 318
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 4e-15
Identities = 59/288 (20%), Positives = 92/288 (31%), Gaps = 77/288 (26%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-I 478
D IG G +GSV + PS + +AVK+ S + +QK+ +++ + +
Sbjct: 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEK---EQKQLLMDLDVVMRSS 78
Query: 479 RHRNIVKFYG-FCSHARHSILIYEYLKRGSLATNLSNDAA--------------AEEL-- 521
IV+FYG I + E + S +
Sbjct: 79 DCPYIVQFYGALFREGDCWICM-ELMS-TSFDKFYKYVYSVLDDVIPEEILGKITLATVK 136
Query: 522 --------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP- 566
DI N+LLD + DFGI+ L DS + G Y+AP
Sbjct: 137 ALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLV-DSIAKTRDAGCRPYMAPE 195
Query: 567 ---------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617
Y + DV+S + E+ G+ P + +
Sbjct: 196 RIDPSASRQGYDVRSDVWSLGITLYELATGRFPY---PKWNSVFDQLTQVVKG------D 246
Query: 618 PPSPDVQGKLISIMEVAFS---------CLDVSPESRPTMQTITQQLL 656
PP +L + E FS CL RP ++LL
Sbjct: 247 PP------QLSNSEEREFSPSFINFVNLCLTKDESKRPK----YKELL 284
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 5e-15
Identities = 52/270 (19%), Positives = 96/270 (35%), Gaps = 60/270 (22%)
Query: 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH--RNIVK 485
IGSG V++ K+ A+K N L + EI L K++ I++
Sbjct: 35 QIGSGGSSKVFQVLNEKKQIYAIKYVN--LEEADNQTLDSYRNEIAYLNKLQQHSDKIIR 92
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------ 521
Y + ++ ++ E L + L + +
Sbjct: 93 LYDYEITDQYIYMVMEC-GNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHS 151
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAP------------- 566
D+ N L+ + + DFGIA ++PD+++ VGT Y+ P
Sbjct: 152 DLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENG 210
Query: 567 ----DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622
K DV+S + + GK P + + + +L ++DP PD
Sbjct: 211 KSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQIS-------KLHAIIDPNHEIEFPD 263
Query: 623 VQGK-LISIMEVAFSCLDVSPESRPTMQTI 651
+ K L +++ CL P+ R ++ +
Sbjct: 264 IPEKDLQDVLK---CCLKRDPKQRISIPEL 290
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 6e-15
Identities = 57/301 (18%), Positives = 95/301 (31%), Gaps = 61/301 (20%)
Query: 392 QRSPQNSQGLLSILSFKGKFDYVEIIRAINDFDAKYCI----GSGRHGSVYRA-ELPSKE 446
+ L + I Y GSG +G V + +
Sbjct: 5 HHHSSGRENLYFQGDLQATPGMF-ITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHV 63
Query: 447 FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRG 506
A+K S + + E+ L + H NI+K Y F R+ L+ E K G
Sbjct: 64 ERAIKIIRKTSVST--SSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGG 121
Query: 507 SL------ATNLSNDAAAEEL------------------DISSKNVLLDLEHKAH---VS 539
L + AA + D+ +N+LL+ + K +
Sbjct: 122 ELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIV 181
Query: 540 DFGIAKFLKPDSSNWSALVGTYRYVAP-----DYRKKCDVYSFRVLALEVIKGKHP---- 590
DFG++ + +GT Y+AP Y +KCDV+S V+ ++ G P
Sbjct: 182 DFGLSAVFENQKK-MKERLGTAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFGGQ 240
Query: 591 --RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTM 648
+ + + + P S + LI M L + R +
Sbjct: 241 TDQEILRKVE------KGKYT-FDSPEWKNVSEGAK-DLIKQM------LQFDSQRRISA 286
Query: 649 Q 649
Q
Sbjct: 287 Q 287
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 7e-15
Identities = 52/286 (18%), Positives = 97/286 (33%), Gaps = 82/286 (28%)
Query: 429 IGSGRHGSVYRAELPSKEFL----AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G G GSV A+L ++ AVK + + + D +EF E + + H ++
Sbjct: 31 LGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASS--DIEEFLREAACMKEFDHPHVA 88
Query: 485 KFYGFCS------HARHSILIYEYLKRGSLATNLSNDAAAEE-------------LDISS 525
K G ++I ++K G L L E +DI+
Sbjct: 89 KLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIAC 148
Query: 526 -----------------KNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY------- 561
+N +L + V+DFG+++ + Y
Sbjct: 149 GMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGD--------YYRQGCASK 200
Query: 562 ---RYVAP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEM 611
+++A DV++F V E++ +G+ P + N +
Sbjct: 201 LPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQ---------TPYAGIENAEIYNY 251
Query: 612 LDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L RL P P+ ++ +M C P+ RP+ + +L
Sbjct: 252 LIGGNRLKQP-PECMEEVYDLMY---QCWSADPKQRPSFTCLRMEL 293
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-14
Identities = 39/193 (20%), Positives = 74/193 (38%), Gaps = 40/193 (20%)
Query: 422 DFDAKYC----IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
F +Y +G G V R ++ + + A N+ S + D ++ E
Sbjct: 8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSAR--DHQKLEREARICR 65
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL--------- 521
++H NIV+ + S H LI++ + G L S A+ +
Sbjct: 66 LLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLH 125
Query: 522 ---------DISSKNVLLDLEHKAH---VSDFGIAKFLKPDSSNWSALVGTYRYVAP--- 566
++ +N+LL + K ++DFG+A ++ + W GT Y++P
Sbjct: 126 CHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVL 185
Query: 567 ---DYRKKCDVYS 576
Y K D+++
Sbjct: 186 RKDPYGKPVDLWA 198
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 50/273 (18%), Positives = 101/273 (36%), Gaps = 55/273 (20%)
Query: 418 RAINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFN-SPLPSDQIADQKEFFAEIEAL 475
I DF +G G VYRA + + +A+K + + + + E++
Sbjct: 8 EKIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQR--VQNEVKIH 65
Query: 476 TKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL-------ATNLSNDAAAEEL------- 521
+++H +I++ Y + + + L+ E G + S + A +
Sbjct: 66 CQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGM 125
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP---- 566
D++ N+LL ++DFG+A LK L GT Y++P
Sbjct: 126 LYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIAT 185
Query: 567 --DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILP--SPSVINM-RLDEMLDPRLPPP-S 620
+ + DV+S + ++ G+ P + +V N + D +P S
Sbjct: 186 RSAHGLESDVWSLGCMFYTLLIGR---------PPFDTDTVKNTLNKVVLADYEMPSFLS 236
Query: 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
+ + LI + L +P R ++ ++
Sbjct: 237 IEAK-DLIHQL------LRRNPADRLSLSSVLD 262
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 42/193 (21%)
Query: 422 DFDAKYCI----GSGRHGSVYRA-ELPSKEFLAVKKFN-SPLPSDQIADQKEFFAEIEAL 475
F +Y I G G G V + + +++ AVK N + + D E+E L
Sbjct: 19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNK---DTSTILREVELL 75
Query: 476 TKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL-------- 521
K+ H NI+K + + ++ E G L S AA +
Sbjct: 76 KKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGIT 135
Query: 522 ----------DISSKNVLLDLEHKAH---VSDFGIAKFLKPDSSNWSALVGTYRYVAP-- 566
D+ +N+LL+ + K + DFG++ + ++ +GT Y+AP
Sbjct: 136 YMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK-MKDRIGTAYYIAPEV 194
Query: 567 ---DYRKKCDVYS 576
Y +KCDV+S
Sbjct: 195 LRGTYDEKCDVWS 207
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 2e-14
Identities = 51/270 (18%), Positives = 95/270 (35%), Gaps = 60/270 (22%)
Query: 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH--RNIVK 485
IGSG V++ K+ A+K N L + EI L K++ I++
Sbjct: 16 QIGSGGSSKVFQVLNEKKQIYAIKYVN--LEEADNQTLDSYRNEIAYLNKLQQHSDKIIR 73
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------ 521
Y + ++ ++ E L + L + +
Sbjct: 74 LYDYEITDQYIYMVMEC-GNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHS 132
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAP------------- 566
D+ N L+ + + DFGIA ++PD+++ VGT Y+ P
Sbjct: 133 DLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENG 191
Query: 567 ----DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622
K DV+S + + GK P + + + +L ++DP PD
Sbjct: 192 KSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQIS-------KLHAIIDPNHEIEFPD 244
Query: 623 -VQGKLISIMEVAFSCLDVSPESRPTMQTI 651
+ L +++ CL P+ R ++ +
Sbjct: 245 IPEKDLQDVLK---CCLKRDPKQRISIPEL 271
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 2e-14
Identities = 51/286 (17%), Positives = 87/286 (30%), Gaps = 78/286 (27%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFY 487
+G G G+V +AVK+ I EI+ LT+ H N++++Y
Sbjct: 23 LGYGSSGTVVFQGSFQGRPVAVKRML-------IDFCDIALMEIKLLTESDDHPNVIRYY 75
Query: 488 GFCSHARHSILIYEY---------LKRGSLATNLSNDAAAEELDISSK------------ 526
+ R + E + NL + + +
Sbjct: 76 CSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLK 135
Query: 527 ---------NVLLDLEHKAH-------------VSDFGIAKFLKPDSSNWSA----LVGT 560
N+L+ + +SDFG+ K L S++ GT
Sbjct: 136 IIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGT 195
Query: 561 YRYVAPD-------------YRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINM 606
+ AP+ + D++S + ++ KGKHP F ++I
Sbjct: 196 SGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHP--FGDKYSRESNIIRG 253
Query: 607 RLDEMLDPRLPPPSPDVQGK-LISIMEVAFSCLDVSPESRPTMQTI 651
L S + LIS +D P RPT +
Sbjct: 254 IFSLDEMKCLHDRSLIAEATDLIS------QMIDHDPLKRPTAMKV 293
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 61/291 (20%), Positives = 109/291 (37%), Gaps = 89/291 (30%)
Query: 429 IGSGRHGSVYRAEL----PSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
+G G G V+ AE P ++ + AVK L + +++F E E LT ++H++
Sbjct: 49 LGEGAFGKVFLAECHNLLPEQDKMLVAVKA----LKEASESARQDFQREAELLTMLQHQH 104
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSLATNL------------SNDAAAEEL--------- 521
IV+F+G C+ R ++++EY++ G L L D A L
Sbjct: 105 IVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVA 164
Query: 522 ------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRY 563
D++++N L+ + DFG+++ + YR
Sbjct: 165 SQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTD--------YYRV 216
Query: 564 V----------AP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINM 606
P YRK + DV+SF V+ E+ GK P + N
Sbjct: 217 GGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQ---------PWYQLSNT 267
Query: 607 RLDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ + L P ++ +IM C P+ R +++ + +L
Sbjct: 268 EAIDCITQGRELERP-RACPPEVYAIMR---GCWQREPQQRHSIKDVHARL 314
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 46/286 (16%), Positives = 94/286 (32%), Gaps = 83/286 (29%)
Query: 429 IGSGRHGSVYRAEL----PSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
+G G G VY + A+K N + + ++ EF E + + +
Sbjct: 33 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN---EAASMRERIEFLNEASVMKEFNCHH 89
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSLATNL-------SNDAAAEEL-------------- 521
+V+ G S + +++I E + RG L + L +N+
Sbjct: 90 VVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIAD 149
Query: 522 -------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY------- 561
D++++N ++ + + DFG+ + + Y
Sbjct: 150 GMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETD--------YYRKGGKGL 201
Query: 562 ---RYVAP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEM 611
R+++P DV+SF V+ E+ + P + N ++
Sbjct: 202 LPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQ---------PYQGLSNEQVLRF 252
Query: 612 LDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ L P + L +M C +P+ RP+ I +
Sbjct: 253 VMEGGLLDKP-DNCPDMLFELMR---MCWQYNPKMRPSFLEIISSI 294
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 2e-14
Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 12/161 (7%)
Query: 122 PNLVRISLEGNNMRGTISE-AFGIYLNLTFLDISDNNFFGEIASN-WGKCPKLSTLNVSM 179
+ L NN+ +E NL L +S N+ I+S + P L L++S
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSS 97
Query: 180 NNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKE-FGKLNSLTKLILRGNQLIGHLPSE 237
N++ ++ + +L L L NHIV + + F + L KL L NQ+ P E
Sbjct: 98 NHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVE 154
Query: 238 I----GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
+ L KL L+LS+N+ L L L L
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 7e-14
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 12/137 (8%)
Query: 174 TLNVSMNNITRSIPLEI--GNLSTLNEFDLSLNHIVGKIPKE-FGKLNSLTKLILRGNQL 230
L++S NN++ + E L+ L+ LS NH+ I E F + +L L L N L
Sbjct: 43 LLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHL 100
Query: 231 IGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKE---- 285
L + L LE L L N + + ++ +L L LS+ Q I P E
Sbjct: 101 -HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKD 158
Query: 286 LGKLVQLSELELSHNFL 302
KL +L L+LS N L
Sbjct: 159 GNKLPKLMLLDLSSNKL 175
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 3e-11
Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 12/141 (8%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETW-NLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFL 58
LTNL L L N+L I +E + + +L L L N +L + +L +L L L
Sbjct: 62 RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLL 119
Query: 59 FENNLSGSIPPSV-GNL-MLTVLALENNHFT---GNLRHNICRNGALERVIVGGNHFRGP 113
+ N++ + + ++ L L L N + L + + L + + N +
Sbjct: 120 YNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Query: 114 IPKCLRNCPNLVR--ISLEGN 132
L+ P V+ + L N
Sbjct: 179 PLTDLQKLPAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 4e-11
Identities = 40/207 (19%), Positives = 66/207 (31%), Gaps = 51/207 (24%)
Query: 3 TNLRELHLRDNYLTGLIPTET-WNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFE 60
+ L L N L+ L T L +L L L N + S + +LRYL L
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97
Query: 61 NNLSGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCL 118
N+L ++ + L VL L NNH ++
Sbjct: 98 NHLH-TLDEFLFSDLQALEVLLLYNNHIV-----------VVD-------------RNAF 132
Query: 119 RNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVS 178
+ L ++ L N + E + K PKL L++S
Sbjct: 133 EDMAQLQKLYLSQNQISRFPVELI---------------------KDGNKLPKLMLLDLS 171
Query: 179 MNNITRSIPLEIGNLSTLNEFDLSLNH 205
N + + ++ L + L L++
Sbjct: 172 SNKLKKLPLTDLQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 4e-09
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 219 SLTKLILRGNQLIGHLPSEI--GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKY 276
L L N + L +E LT L L LS N + + E+ + L YLDLS
Sbjct: 40 YTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 277 QFIQELPKE-LGKLVQLSELELSHN 300
+ L + L L L L +N
Sbjct: 99 H-LHTLDEFLFSDLQALEVLLLYNN 122
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 6e-04
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 1 NLTNLRELHLRDNYLTGLIP---TETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSL--RY 55
++ L++L+L N ++ + L L+ L L N+ + + + L +
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193
Query: 56 LFLFENNL 63
L+L N L
Sbjct: 194 LYLHNNPL 201
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 3e-14
Identities = 55/278 (19%), Positives = 96/278 (34%), Gaps = 61/278 (21%)
Query: 416 IIRAINDFDAKYCI----GSGRHGSVYRA-ELPSKEFLAVKKFN-SPLPSDQIADQKEFF 469
+ + F +Y G G G V + + + AVK + + D++
Sbjct: 17 VQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKT--DKESLL 74
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL-- 521
E++ L ++ H NI+K Y F + L+ E G L S AA +
Sbjct: 75 REVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQ 134
Query: 522 ----------------DISSKNVLLDLEHKAH---VSDFGIAKFLKPDSSNWSALVGTYR 562
D+ +N+LL+ + K + DFG++ + +GT
Sbjct: 135 VLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKK-MKDKIGTAY 193
Query: 563 YVAP-----DYRKKCDVYSFRVLALEVIKGKHP------RGFVSSILPSPSVINMRLDEM 611
Y+AP Y +KCDV+S V+ ++ G P + + +
Sbjct: 194 YIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVE------KGKYT-F 246
Query: 612 LDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQ 649
P+ S + LI M L P R + +
Sbjct: 247 ELPQWKKVSESAK-DLIRKM------LTYVPSMRISAR 277
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 3e-14
Identities = 47/232 (20%), Positives = 86/232 (37%), Gaps = 45/232 (19%)
Query: 385 DQANREGQRSPQNSQGLLSILSFKGKFDYVEIIRAINDFDAKY------CIGSGRHGSVY 438
D R +S + S + I + FD+ + ++ Y +G GR G V+
Sbjct: 47 DLTERMPVKSKRTSALAVDIPAPPAPFDHRIVTAKQGAVNSFYTVSKTEILGGGRFGQVH 106
Query: 439 RA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497
+ E + LA K + + + D++E EI + ++ H N+++ Y +
Sbjct: 107 KCEETATGLKLAAKI----IKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIV 162
Query: 498 LIYEYLKRGSL-------ATNLSNDAAAE------------------ELDISSKNVLLDL 532
L+ EY+ G L + NL+ LD+ +N+L
Sbjct: 163 LVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVN 222
Query: 533 EHKAHV--SDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYS 576
+ DFG+A+ KP GT ++AP+ D++S
Sbjct: 223 RDAKQIKIIDFGLARRYKPR-EKLKVNFGTPEFLAPEVVNYDFVSFPTDMWS 273
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 3e-14
Identities = 41/198 (20%), Positives = 73/198 (36%), Gaps = 43/198 (21%)
Query: 422 DFDAKYCI----GSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
Y I G+G G V+R E + A K + + +D++ EI+ ++
Sbjct: 154 HVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF----VMTPHESDKETVRKEIQTMS 209
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSL-------ATNLSNDAAAE---------- 519
+RH +V + ++IYE++ G L +S D A E
Sbjct: 210 VLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLC 269
Query: 520 --------ELDISSKNVLLDLEHKAHV--SDFGIAKFLKPDSSNWSALVGTYRYVAPD-- 567
LD+ +N++ + + DFG+ L P + GT + AP+
Sbjct: 270 HMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK-QSVKVTTGTAEFAAPEVA 328
Query: 568 ----YRKKCDVYSFRVLA 581
D++S VL+
Sbjct: 329 EGKPVGYYTDMWSVGVLS 346
|
| >3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 67/294 (22%), Positives = 105/294 (35%), Gaps = 94/294 (31%)
Query: 429 IGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
+G G G V+ AE K +AVK L +A +K+F E E LT ++H +
Sbjct: 23 LGEGAFGKVFLAECYNLSPTKDKMLVAVKA----LKDPTLAARKDFQREAELLTNLQHEH 78
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSL-------------ATNLSNDAAAEEL-------- 521
IVKFYG C I+++EY+K G L + A EL
Sbjct: 79 IVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHI 138
Query: 522 -------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR 562
D++++N L+ + DFG+++ + YR
Sbjct: 139 ASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTD--------YYR 190
Query: 563 YV----------AP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVIN 605
P YRK + DV+SF V+ E+ GK P + N
Sbjct: 191 VGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQ---------PWFQLSN 241
Query: 606 MRLDEMLDP--RLPPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ E + L P P ++ +M C P+ R ++ I + L
Sbjct: 242 TEVIECITQGRVLERPRVCPK---EVYDVML---GCWQREPQQRLNIKEIYKIL 289
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 4e-14
Identities = 53/280 (18%), Positives = 94/280 (33%), Gaps = 65/280 (23%)
Query: 421 NDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK-I 478
+D + +G G +G V + +PS + +AVK+ + + +QK +++ + +
Sbjct: 7 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRA---TVNSQEQKRLLMDLDISMRTV 63
Query: 479 RHRNIVKFYG-FCSHARHSILIYEYLKRGSLATNLSNDAA-------------AEEL--- 521
V FYG I + E + SL A +
Sbjct: 64 DCPFTVTFYGALFREGDVWICM-ELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKA 121
Query: 522 -------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP-- 566
D+ NVL++ + + DFGI+ +L D G Y+AP
Sbjct: 122 LEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLV-DDVAKDIDAGCKPYMAPER 180
Query: 567 --------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618
Y K D++S + +E+ + P S + + + P
Sbjct: 181 INPELNQKGYSVKSDIWSLGITMIELAILRFP-------YDSWGTP-FQQLKQV-VEEPS 231
Query: 619 PSPDVQGKLISIMEVAF--SCLDVSPESRPTMQTITQQLL 656
P S V F CL + + RPT +L+
Sbjct: 232 PQLP--ADKFSAEFVDFTSQCLKKNSKERPT----YPELM 265
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 4e-14
Identities = 58/304 (19%), Positives = 93/304 (30%), Gaps = 71/304 (23%)
Query: 418 RAINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
+ ++ K +G+G G V R + E +A+K+ L +++ + EI+ +
Sbjct: 11 QTCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPK---NRERWCLEIQIMK 67
Query: 477 KIRHRNIVKFY------GFCSHARHSILIYEYLKRGSL---------ATNLSNDAAAEEL 521
K+ H N+V + +L EY + G L L L
Sbjct: 68 KLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLL 127
Query: 522 -DISS---------------K--NVLLDLEHKAH---VSDFGIAKFLKPDSSNWSALVGT 560
DISS K N++L + + D G AK L + VGT
Sbjct: 128 SDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQG-ELCTEFVGT 186
Query: 561 YRYVAPD------YRKKCDVYSFRVLALEVIKGKHP-----------------RGFVSSI 597
+Y+AP+ Y D +SF LA E I G P +
Sbjct: 187 LQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVV 246
Query: 598 LPSPSVINMRLDEMLDP-RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656
+ + P L + + M L R T
Sbjct: 247 YDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCM------LMWHQRQRGTDPQNPNVGC 300
Query: 657 FSLV 660
F +
Sbjct: 301 FQAL 304
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 4e-14
Identities = 58/270 (21%), Positives = 103/270 (38%), Gaps = 64/270 (23%)
Query: 429 IGSGRHGSVYRAEL--PSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G+ G V++ P + A+K + +++F E + + H +IV
Sbjct: 398 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSV---REKFLQEALTMRQFDHPHIV 454
Query: 485 KFYGFCSHARHSILI-YEYLKRGSLAT---------------NLSNDAAA-----EEL-- 521
K G + + + I E G L + + + E
Sbjct: 455 KLIGVIT--ENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRF 512
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY--RYVAPD---YRK--- 570
DI+++NVL+ + DFG++++++ DS+ + A G +++AP+ +R+
Sbjct: 513 VHRDIAARNVLVSSNDCVKLGDFGLSRYME-DSTYYKASKGKLPIKWMAPESINFRRFTS 571
Query: 571 KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPS--PDVQG 625
DV+ F V E++ G P V N + ++ RLP P P
Sbjct: 572 ASDVWMFGVCMWEILMHGV---------KPFQGVKNNDVIGRIENGERLPMPPNCPP--- 619
Query: 626 KLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L S+M C P RP + QL
Sbjct: 620 TLYSLMT---KCWAYDPSRRPRFTELKAQL 646
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 5e-14
Identities = 57/275 (20%), Positives = 97/275 (35%), Gaps = 60/275 (21%)
Query: 418 RAINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFN-SPLPSDQIADQKEFFAEIEAL 475
R+ + +G G + + +KE A K S L ++ EI
Sbjct: 12 RSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREK--MSMEISIH 69
Query: 476 TKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLA------TNLSNDAAAEEL-------- 521
+ H+++V F+GF ++ E +R SL L+ A L
Sbjct: 70 RSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQ 129
Query: 522 ----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP----- 566
D+ N+ L+ + + + DFG+A ++ D L GT Y+AP
Sbjct: 130 YLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSK 189
Query: 567 -DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML------DPRLPPP 619
+ + DV+S + ++ GK P F +S L E + +P
Sbjct: 190 KGHSFEVDVWSIGCIMYTLLVGKPP--FETSCLK----------ETYLRIKKNEYSIPKH 237
Query: 620 -SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
+P LI M L P +RPT+ +
Sbjct: 238 INPVAA-SLIQKM------LQTDPTARPTINELLN 265
|
| >3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 6e-14
Identities = 58/312 (18%), Positives = 97/312 (31%), Gaps = 72/312 (23%)
Query: 392 QRSPQNSQGLLSILSFKGKFDYVEIIRAINDFDAKYCI----GSGRHGSVYRA-ELPSKE 446
+ + L + + Y GSG +G V E
Sbjct: 4 HHHHSSGRENLYFQGIAINPGMY-VRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHS 62
Query: 447 FLAVK---------KFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497
A+K S + +E + EI L + H NI+K + ++
Sbjct: 63 EKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFY 122
Query: 498 LIYEYLKRGSL------ATNLSNDAAAEEL------------------DISSKNVLL--- 530
L+ E+ + G L AA + DI +N+LL
Sbjct: 123 LVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENK 182
Query: 531 --DLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP-----DYRKKCDVYSFRVLALE 583
L K + DFG++ F D +GT Y+AP Y +KCDV+S V+
Sbjct: 183 NSLLNIK--IVDFGLSSFFSKDYK-LRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYI 239
Query: 584 VIKGKHP------RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSC 637
++ G P + + + + S + + +LI +M
Sbjct: 240 LLCGYPPFGGQNDQDIIKKVE------KGKYY-FDFNDWKNISDEAK-ELIKLM------ 285
Query: 638 LDVSPESRPTMQ 649
L R T +
Sbjct: 286 LTYDYNKRCTAE 297
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 7e-14
Identities = 56/264 (21%), Positives = 94/264 (35%), Gaps = 60/264 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFN-SPLPSDQIADQKEFFAEIEALTKIRHRNIVKF 486
+G G + + +KE A K S L ++ EI + H+++V F
Sbjct: 49 LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREK--MSMEISIHRSLAHQHVVGF 106
Query: 487 YGFCSHARHSILIYEYLKRGSLA------TNLSNDAAAEEL------------------D 522
+GF ++ E +R SL L+ A L D
Sbjct: 107 HGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRD 166
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DYRKKCDVYS 576
+ N+ L+ + + + DFG+A ++ D L GT Y+AP + + DV+S
Sbjct: 167 LKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWS 226
Query: 577 FRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML------DPRLPP-PSPDVQGKLIS 629
+ ++ GK P F +S L E + +P +P LI
Sbjct: 227 IGCIMYTLLVGKPP--FETSCLK----------ETYLRIKKNEYSIPKHINPVAA-SLIQ 273
Query: 630 IMEVAFSCLDVSPESRPTMQTITQ 653
M L P +RPT+ +
Sbjct: 274 KM------LQTDPTARPTINELLN 291
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365 | Back alignment and structure |
|---|
Score = 72.3 bits (177), Expect = 9e-14
Identities = 46/295 (15%), Positives = 80/295 (27%), Gaps = 75/295 (25%)
Query: 358 PNLSRLPTNHHPQSGCISVIAYVPIIWDQANR----EGQRSPQNSQGLLSILSFKGKFDY 413
P +S L T P + P WD G P +S + ++ K
Sbjct: 3 PQMSSLGTVDAPNFIVGN-----P--WDDKLIFKLLSGLSKPVSSYP--NTFEWQCKLPA 53
Query: 414 VEIIRAINDFDAKYCI----GSGRHGSVYRAE------LPSKEFLAVKKFNSPLPSDQIA 463
++ + G G VY A +K+ +K P +
Sbjct: 54 IKPKTEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYI 113
Query: 464 DQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAA 517
+ +E L +KFY S+L+ E G+L N
Sbjct: 114 GTQL----MERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVM 169
Query: 518 AEEL-----------------------DISSKNVLL-----------DLEHKAHVSDFGI 543
+ L DI N +L DL + D G
Sbjct: 170 PQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQ 229
Query: 544 AKFLK--PDSSNWSALVGTYRYVAP------DYRKKCDVYSFRVLALEVIKGKHP 590
+ +K P + ++A T + + + D + ++ G +
Sbjct: 230 SIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYM 284
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 9e-14
Identities = 40/194 (20%), Positives = 69/194 (35%), Gaps = 43/194 (22%)
Query: 422 DFDAKYCI----GSGRHGSVYRA-ELPSKEFLAVKKFN-SPLPSDQIADQKEFFAEIEAL 475
F Y + G G V R + A K N L + D ++ E
Sbjct: 3 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSAR---DFQKLEREARIC 59
Query: 476 TKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL-------- 521
K++H NIV+ + L+++ + G L S A+ +
Sbjct: 60 RKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIA 119
Query: 522 ----------DISSKNVLLDLEHK-AHV--SDFGIAKFLKPDSSNWSALVGTYRYVAP-- 566
++ +N+LL + K A V +DFG+A + + W GT Y++P
Sbjct: 120 YCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA-WHGFAGTPGYLSPEV 178
Query: 567 ----DYRKKCDVYS 576
Y K D+++
Sbjct: 179 LKKDPYSKPVDIWA 192
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 9e-14
Identities = 46/277 (16%), Positives = 75/277 (27%), Gaps = 64/277 (23%)
Query: 71 VGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLE 130
+ + +L+ + I + L ++ I L
Sbjct: 1 MARFSIEGKSLKLD--------AITTEDEK------------SVFAVLLEDDSVKEIVLS 40
Query: 131 GNNM--RGT--ISEAFGIYLNLTFLDISDNNF----------FGEIASNWGKCPKLSTLN 176
GN + +SE +L + SD + KCPKL T+
Sbjct: 41 GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100
Query: 177 VSMNNIT----RSIPLEIGNLSTLNEFDLSLNHI-------------VGKIPKEFGKLNS 219
+S N + + + L L N + + K+
Sbjct: 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP 160
Query: 220 LTKLILRGNQL----IGHLPSEIGSLTKLEFLNLSTNRF-----SSLIPESLGNLLKLHY 270
L +I N+L + S L + + N L+ E L +L
Sbjct: 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220
Query: 271 LDLSKYQF----IQELPKELGKLVQLSELELSHNFLG 303
LDL F L L L EL L+ L
Sbjct: 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 50/327 (15%), Positives = 95/327 (29%), Gaps = 60/327 (18%)
Query: 27 KSLVKLGLGGNQFRG----SLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLA-- 80
S+ L + S+ + + S++ + L N + G L+
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI--------GTEAARWLSEN 55
Query: 81 LENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISE 140
+ + + G ++ I + + L CP L + L N T E
Sbjct: 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRL---LLQALLKCPKLHTVRLSDNAFGPTAQE 112
Query: 141 AFGIYL----NLTFLDISDNNF-------------FGEIASNWGKCPKLSTLNVSMNNIT 183
+L L L + +N + P L ++ N +
Sbjct: 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172
Query: 184 ----RSIPLEIGNLSTLNEFDLSLNHI-----VGKIPKEFGKLNSLTKLILRGNQLIG-- 232
+ + L+ + N I + + L L L+ N
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHL 231
Query: 233 ---HLPSEIGSLTKLEFLNLSTNRFSS----LIPESLGNL--LKLHYLDLSKYQF----I 279
L + S L L L+ S+ + ++ L + L L L + +
Sbjct: 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291
Query: 280 QELPKELG-KLVQLSELELSHNFLGRE 305
+ L + K+ L LEL+ N E
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRFSEE 318
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 4e-13
Identities = 43/286 (15%), Positives = 77/286 (26%), Gaps = 56/286 (19%)
Query: 1 NLTNLRELHLRDNYLTG----LIPTETWNLKSLVKLGLGGNQFR----------GSLPSS 46
+++E+ L N + + + K L L +
Sbjct: 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89
Query: 47 VGNLSSLRYLFLFENNLSGSIPPSVGNLM-----LTVLALENNHFT-------------G 88
+ L + L +N + + + + L L L NN
Sbjct: 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149
Query: 89 NLRHNICRNGALERVIVGGNHFRGP----IPKCLRNCPNLVRISLEGNNMR-----GTIS 139
+ L +I G N K ++ L + + N +R +
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209
Query: 140 EAFGIYLNLTFLDISDNNFFGE----IASNWGKCPKLSTLNVSMNNIT----RSI--PLE 189
E L LD+ DN F +A P L L ++ ++ ++
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269
Query: 190 IGNLSTLNEFDLSLNHIVGKIPKEFG-----KLNSLTKLILRGNQL 230
L L N I + K+ L L L GN+
Sbjct: 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 58/347 (16%), Positives = 113/347 (32%), Gaps = 67/347 (19%)
Query: 1 NLTNLRELHLRDNYLTG----LIPTETWNLKSLVKLGLGGNQF--RG--SLPSSVGNLSS 52
+ + L+ + +T + S+ ++ L GN L ++ +
Sbjct: 3 RFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61
Query: 53 LRYLFL---FENNLSGSIPPSVGNLM--------LTVLALENNHFTGN----LRHNICRN 97
L F + IP ++ L+ L + L +N F L + ++
Sbjct: 62 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121
Query: 98 GALERVIVGGNHF-------------RGPIPKCLRNCPNLVRISLEGNNMRG----TISE 140
LE + + N + K +N P L I N + ++
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181
Query: 141 AFGIYLNLTFLDISDNNFFGE-----IASNWGKCPKLSTLNVSMNNIT----RSIPLEIG 191
F + L + + N E + C +L L++ N T ++ + +
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241
Query: 192 NLSTLNEFDLSLNHI----VGKIPKEFGKLN--SLTKLILRGNQL----IGHLPSEIGS- 240
+ L E L+ + + F KL L L L+ N++ + L + I
Sbjct: 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301
Query: 241 LTKLEFLNLSTNRFS------SLIPESLGNLLKLHYLDLSKYQFIQE 281
+ L FL L+ NRFS I E + +L + + +
Sbjct: 302 MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTD 348
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 18/113 (15%)
Query: 219 SLTKLILRGNQL----IGHLPSEIGSLTKLEFLNLSTNRFS----SLIPESLGNLLKLHY 270
S+ L+ + + + + + ++ + LS N + E++ + L
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64
Query: 271 LDLSK----------YQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSM 313
+ S + ++ L + L K +L + LS N G +
Sbjct: 65 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF 117
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 45/192 (23%), Positives = 66/192 (34%), Gaps = 42/192 (21%)
Query: 422 DFDAKYCI----GSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
D + Y + G G G V A + ++ A KK +P + D F EIE +
Sbjct: 6 DINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKK----IPKYFVEDVDRFKQEIEIMK 61
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL--------- 521
+ H NI++ Y L+ E G L AA +
Sbjct: 62 SLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAY 121
Query: 522 ---------DISSKNVLLDLEHKAH---VSDFGIAKFLKPDSSNWSALVGTYRYVAP--- 566
D+ +N L + + DFG+A KP VGT YV+P
Sbjct: 122 CHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPG-KMMRTKVGTPYYVSPQVL 180
Query: 567 --DYRKKCDVYS 576
Y +CD +S
Sbjct: 181 EGLYGPECDEWS 192
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 54/292 (18%), Positives = 89/292 (30%), Gaps = 81/292 (27%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G G +V+R + + A+K FN+ E E L K+ H+NIVK +
Sbjct: 17 LGQGATANVFRGRHKKTGDLFAIKVFNNISFLR---PVDVQMREFEVLKKLNHKNIVKLF 73
Query: 488 GF--CSHARHSILIYEYLKRGSL---------ATNLSNDAAAEEL--------------- 521
+ RH +LI E+ GSL A L L
Sbjct: 74 AIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGI 133
Query: 522 ---DISSKNVLLDLEHKAH----VSDFGIAKFLKPDSSNWSALVGTYRYVAPD------- 567
+I N++ + ++DFG A+ L+ D + +L GT Y+ PD
Sbjct: 134 VHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDD-EQFVSLYGTEEYLHPDMYERAVL 192
Query: 568 -------YRKKCDVYSFRVLALE-----------------------VIKGKHPRGFVSSI 597
Y D++S V +I GK
Sbjct: 193 RKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQ 252
Query: 598 LPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQ 649
I+ D + L + +++ + L+ E
Sbjct: 253 KAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANI------LEADQEKCWGFD 298
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 1e-13
Identities = 63/294 (21%), Positives = 110/294 (37%), Gaps = 93/294 (31%)
Query: 429 IGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHR 481
+G+G G V A + +AVK + +++ +E++ ++ + +H
Sbjct: 54 LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLK---STAHADEKEALMSELKIMSHLGQHE 110
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELD------------------- 522
NIV G C+H ++I EY G L L + E D
Sbjct: 111 NIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFS 170
Query: 523 ---------ISSK----------NVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY-- 561
++SK NVLL H A + DFG+A+ + DS Y
Sbjct: 171 SQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDS--------NYIV 222
Query: 562 --------RYVAP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSV-IN 605
+++AP + DV+S+ +L E+ G + P P + +N
Sbjct: 223 KGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLN---------PYPGILVN 273
Query: 606 MRLDEMLDP--RLPPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ +++ ++ P+ P + SIM+ +C + P RPT Q I L
Sbjct: 274 SKFYKLVKDGYQMAQPAFAPK---NIYSIMQ---ACWALEPTHRPTFQQICSFL 321
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 39/200 (19%), Positives = 71/200 (35%), Gaps = 43/200 (21%)
Query: 416 IIRAINDFDAKY----CIGSGRHGSVYRA-ELPSKEFLAVKKFN-SPLPSDQIADQKEFF 469
++ A F Y +G G V R + A K N L + D ++
Sbjct: 20 MMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSAR---DFQKLE 76
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL-- 521
E K++H NIV+ + L+++ + G L S A+ +
Sbjct: 77 REARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQ 136
Query: 522 ----------------DISSKNVLLDLEHKAH---VSDFGIAKFLKPDSSNWSALVGTYR 562
++ +N+LL + K ++DFG+A + + W GT
Sbjct: 137 ILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA-WHGFAGTPG 195
Query: 563 YVAP------DYRKKCDVYS 576
Y++P Y K D+++
Sbjct: 196 YLSPEVLKKDPYSKPVDIWA 215
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 43/193 (22%)
Query: 422 DFDAKYCI----GSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
Y I GSG G V+R E + K + + D+ EI +
Sbjct: 48 SVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKF----INTPYPLDKYTVKNEISIMN 103
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSL-------ATNLSNDAAAE---------- 519
++ H ++ + +LI E+L G L +S
Sbjct: 104 QLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLK 163
Query: 520 --------ELDISSKNVLLDLEHKAHV--SDFGIAKFLKPDSSNWSALVGTYRYVAPD-- 567
LDI +N++ + + + V DFG+A L PD T + AP+
Sbjct: 164 HMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD-EIVKVTTATAEFAAPEIV 222
Query: 568 ----YRKKCDVYS 576
D+++
Sbjct: 223 DREPVGFYTDMWA 235
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 1e-13
Identities = 55/287 (19%), Positives = 90/287 (31%), Gaps = 79/287 (27%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKF 486
+ G VY A+ + S A+K+ S + E+ + K+ H NIV+F
Sbjct: 36 LAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKN----RAIIQEVCFMKKLSGHPNIVQF 91
Query: 487 YGFCSHARHS-------ILIYEYLKRGSLATNLSNDAAAEEL------------------ 521
S + L+ L +G L L + L
Sbjct: 92 CSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQH 151
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPD-SSNWSAL-----------V 558
D+ +N+LL + + DFG A + +WSA
Sbjct: 152 MHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRN 211
Query: 559 GTYRYVAP----DYRK-----KCDVYSFRVLALEVIKGKHPRGFV-SSILPSPSVINMRL 608
T Y P Y K D+++ + + +HP F + L ++N +
Sbjct: 212 TTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHP--FEDGAKL---RIVNGKY 266
Query: 609 DEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P LI M L V+PE R ++ + QL
Sbjct: 267 SI---PPHDTQYTVFH-SLIRAM------LQVNPEERLSIAEVVHQL 303
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 62/295 (21%), Positives = 106/295 (35%), Gaps = 92/295 (31%)
Query: 429 IGSGRHGSVYRAEL------PSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE KE + AVK +++ D + +E+E + I +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLK-DDATEK--DLSDLVSEMEMMKMIGK 99
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNL-------------SNDAAAEELD---- 522
H+NI+ G C+ +I EY +G+L L N E++
Sbjct: 100 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 159
Query: 523 -------------ISSK----------NVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
++S+ NVL+ + ++DFG+A+ +
Sbjct: 160 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI--------D 211
Query: 560 TY----------RYVAP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPS 602
Y +++AP R + DV+SF VL E+ G P P
Sbjct: 212 YYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGS---------PYPG 262
Query: 603 VINMRLDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ L ++L R+ P + +L +M C P RPT + + + L
Sbjct: 263 IPVEELFKLLKEGHRMDKP-ANCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 313
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 8/164 (4%)
Query: 143 GIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEI-GNLSTLNEFDL 201
I + LD+ N + + + KL L ++ N + ++P I L L +
Sbjct: 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92
Query: 202 SLNHIVGKIPKE-FGKLNSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIP 259
+ N + +P F +L +L +L L NQ + LP + SLTKL +L+L N SL
Sbjct: 93 TDNKLQ-ALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150
Query: 260 ESLGNLLKLHYLDLSKYQFIQELPKEL-GKLVQLSELELSHNFL 302
L L L L Q ++ +P+ KL +L L+L +N L
Sbjct: 151 GVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQL 193
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 6e-13
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 8/182 (4%)
Query: 123 NLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNI 182
+ ++ L+ N + S+AF L L ++DN A + + L TL V+ N +
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 183 TRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKE-FGKLNSLTKLILRGNQLIGHLPSEI-G 239
++P+ + L L E L N + +P F L LT L L N+L LP +
Sbjct: 98 Q-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFD 154
Query: 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL-GKLVQLSELELS 298
LT L+ L L N+ + + L +L L L Q ++ +P+ L +L L+L
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQ 213
Query: 299 HN 300
N
Sbjct: 214 EN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-12
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 175 LNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHL 234
L++ N ++ L+ L L+ N + F +L +L L + N+L L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-AL 100
Query: 235 PSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL-GKLVQL 292
P + L L L L N+ SL P +L KL YL L + +Q LPK + KL L
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSL 159
Query: 293 SELELSHNFLGREIPS 308
EL L +N L + +P
Sbjct: 160 KELRLYNNQL-KRVPE 174
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 7/160 (4%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
LT LR L+L DN L L LK+L L + N+ + +LP V L +L L L
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117
Query: 60 ENNLSGSIPPSV-GNL-MLTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGPIPK 116
N L S+PP V +L LT L+L N +L + +L+ + + N +
Sbjct: 118 RNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEG 175
Query: 117 CLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDN 156
L + L+ N ++ AF L L + +N
Sbjct: 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 3e-11
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 185 SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLTK 243
+IP I + + DL N + K F +L L L L N+L LP+ I L
Sbjct: 30 AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKN 86
Query: 244 LEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL-GKLVQLSELELSHN 300
LE L ++ N+ +L L+ L L L + Q ++ LP + L +L+ L L +N
Sbjct: 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN 143
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 46/230 (20%), Positives = 82/230 (35%), Gaps = 55/230 (23%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFEN 61
+ ++L L+ N L+ L L L L L N+ + +LP+ + L +L L++ +N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95
Query: 62 NLSGSIPPSVGNLM--LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
L ++P V + + L L L+ N +L P+
Sbjct: 96 KLQ-ALPIGVFDQLVNLAELRLDRNQLK-----------SLP-------------PRVFD 130
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
+ L +SL N ++ ++ + G++ LT L L +
Sbjct: 131 SLTKLTYLSLGYNELQ-SLPK--GVFDKLT---------------------SLKELRLYN 166
Query: 180 NNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGN 228
N + +P L+ L L N + F L L L L+ N
Sbjct: 167 NQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 42/276 (15%), Positives = 80/276 (28%), Gaps = 68/276 (24%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L N + +L +T L+ + L + + + SL + + ++L+ L L
Sbjct: 17 GLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSH 72
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N +S + P L++
Sbjct: 73 NQIS-DLSP------------------------------------------------LKD 83
Query: 121 CPNLVRISLEGNNMRGTISEAFGIY-LNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
L +S+ N + GI L+ L + +N + L L++
Sbjct: 84 LTKLEELSVNRNR----LKNLNGIPSACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRN 137
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239
N + + L LS L DL N I +L + + L G + + +
Sbjct: 138 NKLKSIVMLG--FLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCV---NEPVK 190
Query: 240 SLTKLEFLNLSTNRFSSLI-PESLGNLLKLHYLDLS 274
+L N + I P + N +
Sbjct: 191 YQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVL 226
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 44/297 (14%), Positives = 86/297 (28%), Gaps = 68/297 (22%)
Query: 7 ELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGS 66
E R + + P L + VK LG + S LS ++ +N+ S
Sbjct: 1 ESIQRPTPINQVFPDP--GLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ-S 55
Query: 67 IPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVR 126
+ L L L +N + ++ L++ L
Sbjct: 56 LAGMQFFTNLKELHLSHNQIS-----DL---------------------SPLKDLTKLEE 89
Query: 127 ISLEGNNMRGTISEAFGIY-LNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRS 185
+S+ N + GI L+ L + +N + L L++ N +
Sbjct: 90 LSVNRNR----LKNLNGIPSACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLKSI 143
Query: 186 IPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLE 245
+ L LS L DL N I T + L K+
Sbjct: 144 VMLG--FLSKLEVLDLHGNEI--------------TNT------------GGLTRLKKVN 175
Query: 246 FLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFL 302
+++L+ + + + L + + ++I P + + +
Sbjct: 176 WIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWELP 230
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 5e-07
Identities = 40/211 (18%), Positives = 70/211 (33%), Gaps = 46/211 (21%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLS--SLRYLFL 58
TNL+ELHL N ++ L P + +L L +L + N+ ++ + L LFL
Sbjct: 61 FFTNLKELHLSHNQISDLSPLK--DLTKLEELSVNRNRL-----KNLNGIPSACLSRLFL 113
Query: 59 FENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCL 118
N L + L +L++ NN +I L
Sbjct: 114 DNNELR-DTDSLIHLKNLEILSIRNNKLK-----SI---------------------VML 146
Query: 119 RNCPNLVRISLEGNNMRGTISEAFGIY--LNLTFLDISDNNFFGEIASNWGKCPKLSTLN 176
L + L GN I+ G+ + ++D++ + P+L N
Sbjct: 147 GFLSKLEVLDLHGNE----ITNTGGLTRLKKVNWIDLTGQKC---VNEPVKYQPELYITN 199
Query: 177 -VSMNNITRSIPLEIGNLSTLNEFDLSLNHI 206
V + P I N + + +
Sbjct: 200 TVKDPDGRWISPYYISNGGSYVDGCVLWELP 230
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 55/302 (18%), Positives = 91/302 (30%), Gaps = 81/302 (26%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G G +V+R + + A+K FN+ E E L K+ H+NIVK +
Sbjct: 17 LGQGATANVFRGRHKKTGDLFAIKVFNNISFLR---PVDVQMREFEVLKKLNHKNIVKLF 73
Query: 488 GF--CSHARHSILIYEYLKRGSL---------ATNLSNDAAAEEL--------------- 521
+ RH +LI E+ GSL A L L
Sbjct: 74 AIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGI 133
Query: 522 ---DISSKNVLLDLEHKAH----VSDFGIAKFLKPDSSNWSALVGTYRYVAPD------- 567
+I N++ + ++DFG A+ L+ D + +L GT Y+ PD
Sbjct: 134 VHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDD-EQFVSLYGTEEYLHPDMYERAVL 192
Query: 568 -------YRKKCDVYSFRVLALE-----------------------VIKGKHPRGFVSSI 597
Y D++S V +I GK
Sbjct: 193 RKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQ 252
Query: 598 LPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657
I+ D + L + +++ + L+ E +
Sbjct: 253 KAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANI------LEADQEKCWGFDQFFAETSD 306
Query: 658 SL 659
L
Sbjct: 307 IL 308
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 42/206 (20%), Positives = 74/206 (35%), Gaps = 48/206 (23%)
Query: 418 RAINDFDAKY----CIGSGRHGSVYRA-ELPSKEFLAVK-----KFNSPLPSDQIADQKE 467
+ + F Y +G G V R P+ + AVK S + ++
Sbjct: 10 HSTHGFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREA 69
Query: 468 FFAEIEALTKI-RHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEE 520
E++ L K+ H NI++ L+++ +K+G L LS +
Sbjct: 70 TLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKI 129
Query: 521 L------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYR 562
+ D+ +N+LLD + ++DFG + L P + GT
Sbjct: 130 MRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEK-LREVCGTPS 188
Query: 563 YVAP------------DYRKKCDVYS 576
Y+AP Y K+ D++S
Sbjct: 189 YLAPEIIECSMNDNHPGYGKEVDMWS 214
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 62/297 (20%), Positives = 107/297 (36%), Gaps = 96/297 (32%)
Query: 429 IGSGRHGSVYRAELPSKEFL--------AVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE + AVK +++ D + +E+E + I +
Sbjct: 77 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLK-SDATEK--DLSDLISEMEMMKMIGK 133
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNL-------------SNDAAAEEL----- 521
H+NI+ G C+ +I EY +G+L L + E+L
Sbjct: 134 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL 193
Query: 522 ----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
D++++NVL+ ++ ++DFG+A+ +
Sbjct: 194 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI--------D 245
Query: 560 TY----------RYVAP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPS 602
Y +++AP R + DV+SF VL E+ G P P
Sbjct: 246 YYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGS---------PYPG 296
Query: 603 VINMRLDEMLDP--RLPPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
V L ++L R+ PS + +L +M C P RPT + + + L
Sbjct: 297 VPVEELFKLLKEGHRMDKPSNCTN---ELYMMMR---DCWHAVPSQRPTFKQLVEDL 347
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 3e-13
Identities = 58/272 (21%), Positives = 95/272 (34%), Gaps = 62/272 (22%)
Query: 422 DFDAKYCI----GSGRHGSVYRA-ELPSKEFLAVKKFN-SPLPSDQIADQKEFFAEIEAL 475
F +Y I G G G V + + +++ AVK N + + D E+E L
Sbjct: 19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNK---DTSTILREVELL 75
Query: 476 TKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL-------- 521
K+ H NI+K + + ++ E G L S AA +
Sbjct: 76 KKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGIT 135
Query: 522 ----------DISSKNVLL-DLEHKAH--VSDFGIAKFLKPDSSNWSALVGTYRYVAP-- 566
D+ +N+LL E + DFG++ + ++ +GT Y+AP
Sbjct: 136 YMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK-MKDRIGTAYYIAPEV 194
Query: 567 ---DYRKKCDVYSFRVLALEVIKGKHP------RGFVSSILPSPSVINMRLDEMLDPRLP 617
Y +KCDV+S V+ ++ G P + + + P+
Sbjct: 195 LRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVE------TGKYA-FDLPQWR 247
Query: 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQ 649
S D + LI M L P R T
Sbjct: 248 TISDDAK-DLIRKM------LTFHPSLRITAT 272
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 71.7 bits (175), Expect = 3e-13
Identities = 35/194 (18%), Positives = 67/194 (34%), Gaps = 21/194 (10%)
Query: 114 IPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLS 173
+ L +C L + E T + L + + E + +
Sbjct: 364 LQSELESCKELQELEPENKWCLLT--------IILLMRALDPLLYEKETLQYFSTLKAVD 415
Query: 174 TLNVSMNNITRSI-----PLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGN 228
+ + + RS + + + L+ + + +L +T L L N
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHN 473
Query: 229 QLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELP--KEL 286
+L LP + +L LE L S N ++ + + NL +L L L + +Q+ + L
Sbjct: 474 RLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNR-LQQSAAIQPL 529
Query: 287 GKLVQLSELELSHN 300
+L L L N
Sbjct: 530 VSCPRLVLLNLQGN 543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 66.3 bits (161), Expect = 2e-11
Identities = 40/246 (16%), Positives = 77/246 (31%), Gaps = 13/246 (5%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+ +E L + ++ + L + L + L S + + L+ L
Sbjct: 324 GSDSQKECVLLKDRPECWCR-DSATDEQLFRCELSVEKST-VLQSELESCKELQELEPEN 381
Query: 61 NNLSGSIPPSVGNL-MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119
+I + L L +F+ + R L+ + + F
Sbjct: 382 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR---SKFLLENSVLKM 438
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
++ + L ++ T+ L +T LD+S N + L L S
Sbjct: 439 EYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVG-KIPKEFGKLNSLTKLILRGNQLIGHLPSEI 238
N + ++ + NL L E L N + + L L L+GN L
Sbjct: 496 NALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQ 552
Query: 239 GSLTKL 244
L ++
Sbjct: 553 ERLAEM 558
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 66.3 bits (161), Expect = 2e-11
Identities = 38/268 (14%), Positives = 77/268 (28%), Gaps = 13/268 (4%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
+L L D S + L ++ L L
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEK 360
Query: 63 LSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCP 122
+ L L EN L I AL+ ++ + +
Sbjct: 361 STVLQSELESCKELQELEPENKWC---LLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 417
Query: 123 NLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNI 182
+ + S Y ++ L ++ + + + + ++ L++S N +
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRL 475
Query: 183 TRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPS--EIGS 240
++P + L L S N + + L L +L+L N+ + + + S
Sbjct: 476 R-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR-LQQSAAIQPLVS 531
Query: 241 LTKLEFLNLSTNRFSSLIPESLGNLLKL 268
+L LNL N L ++
Sbjct: 532 CPRLVLLNLQGNSLCQ-EEGIQERLAEM 558
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 2e-09
Identities = 28/173 (16%), Positives = 52/173 (30%), Gaps = 11/173 (6%)
Query: 132 NNMRGTISEAFGIYLNLTFLDISDN--NFFGEIASNWGKCPKLSTLNVSMNNITRSIPLE 189
+ L ++S + + +L N +
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA 394
Query: 190 IGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNL 249
+ L E + + P L+ L ++ + + L+L
Sbjct: 395 LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR------SKFLLENSVLKMEYADVRVLHL 448
Query: 250 STNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFL 302
+ + L L LL + +LDLS + ++ LP L L L L+ S N L
Sbjct: 449 AHKDLTVL--CHLEQLLLVTHLDLS-HNRLRALPPALAALRCLEVLQASDNAL 498
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 3e-13
Identities = 62/295 (21%), Positives = 106/295 (35%), Gaps = 92/295 (31%)
Query: 429 IGSGRHGSVYRAELP------SKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKI-R 479
+G G G V AE KE + AVK +++ D + +E+E + I +
Sbjct: 89 LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLK-DDATEK--DLSDLVSEMEMMKMIGK 145
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNL-------------SNDAAAEELD---- 522
H+NI+ G C+ +I EY +G+L L N E++
Sbjct: 146 HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL 205
Query: 523 -------------ISSK----------NVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
++S+ NVL+ + ++DFG+A+ +
Sbjct: 206 VSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI--------D 257
Query: 560 TY----------RYVAP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPS 602
Y +++AP R + DV+SF VL E+ G P P
Sbjct: 258 YYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGG---------SPYPG 308
Query: 603 VINMRLDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ L ++L R+ P + +L +M C P RPT + + + L
Sbjct: 309 IPVEELFKLLKEGHRMDKP-ANCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 359
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 4e-13
Identities = 26/294 (8%), Positives = 61/294 (20%), Gaps = 80/294 (27%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+ G V+ ++ E A+K F + + ++ + A ++ + +
Sbjct: 70 LRVGDRSVVFLVRDVERLEDFALKVFTMGAENSR-SELERLHEATFAAARLLGESPEEAR 128
Query: 488 GFCSHAR--------------------------HSILIYEY-----------LKRGSLAT 510
+ +L+ L +
Sbjct: 129 DRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFR 188
Query: 511 NLSNDAAAEEL-------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
A L + N+ + + + + D
Sbjct: 189 GDEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSAL---WKVG 245
Query: 552 SNWSALVGTYRYVAP--------DYRKKCDVYSFRVLALEVIKGKHP----RGFVSSILP 599
+ A Y + + + + V P +
Sbjct: 246 TRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWK 305
Query: 600 SPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
PS+ D + P V+ LI L+ R +
Sbjct: 306 RPSLRVPGTDSLAFGSCTPLPDFVK-TLIG------RFLNFDRRRRLLPLEAME 352
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 37/196 (18%), Positives = 69/196 (35%), Gaps = 42/196 (21%)
Query: 422 DFDAKYCI----GSGRHGSVYRA-ELPSKEFLAVKKFN--SPLPSDQIADQKEFFAEIEA 474
+ Y I GSG+ V + E + A K S + ++E E+
Sbjct: 9 KVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSI 68
Query: 475 LTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDIS---------- 524
L ++ H N++ + + +LI E + G L L+ + E + +
Sbjct: 69 LRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGV 128
Query: 525 ----SKNVL-LDL-----------EHKAHV--SDFGIAKFLKPDSSNWSALVGTYRYVAP 566
+K + DL H+ DFG+A ++ + + GT +VAP
Sbjct: 129 NYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE-FKNIFGTPEFVAP 187
Query: 567 ------DYRKKCDVYS 576
+ D++S
Sbjct: 188 EIVNYEPLGLEADMWS 203
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 5e-13
Identities = 46/237 (19%), Positives = 76/237 (32%), Gaps = 47/237 (19%)
Query: 386 QANREGQRSPQNSQGLLSILSFKGKFDYVEIIRAINDFDAKY----CIGSGRHGSVYRA- 440
A + Q G D + A +F KY IG G V R
Sbjct: 55 LAEAKKLNDAQPKGTENLYFQSMGPEDELPDWAAAKEFYQKYDPKDVIGRGVSSVVRRCV 114
Query: 441 ELPSKEFLAVKKFN----SPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARH 495
+ AVK P ++ E L ++ H +I+ +
Sbjct: 115 HRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSF 174
Query: 496 SILIYEYLKRGSL------ATNLSNDAAAEEL------------------DISSKNVLLD 531
L+++ +++G L LS + D+ +N+LLD
Sbjct: 175 MFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLD 234
Query: 532 LEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------------DYRKKCDVYS 576
+ +SDFG + L+P L GT Y+AP Y K+ D+++
Sbjct: 235 DNMQIRLSDFGFSCHLEPGEK-LRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWA 290
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 6e-13
Identities = 58/302 (19%), Positives = 100/302 (33%), Gaps = 101/302 (33%)
Query: 429 IGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
+G G G V +A +AVK S + ++ +E L ++ H +
Sbjct: 31 LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLK-ENASPS--ELRDLLSEFNVLKQVNHPH 87
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSLATNL---------------------SNDAAAEEL 521
++K YG CS +LI EY K GSL L + L
Sbjct: 88 VIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERAL 147
Query: 522 D-----------------ISSK----------NVLLDLEHKAHVSDFGIAKFLKPDSSNW 554
++ N+L+ K +SDFG+++ + +
Sbjct: 148 TMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEED--- 204
Query: 555 SALVGTY----------RYVAP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSI 597
+Y +++A + DV+SF VL E++ G
Sbjct: 205 -----SYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGG--------- 250
Query: 598 LPSPSVINMRLDEMLDP--RLPPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
P P + RL +L R+ P + ++ +M C P+ RP I++
Sbjct: 251 NPYPGIPPERLFNLLKTGHRMERPDNCSE---EMYRLML---QCWKQEPDKRPVFADISK 304
Query: 654 QL 655
L
Sbjct: 305 DL 306
|
| >2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 6e-13
Identities = 38/196 (19%), Positives = 69/196 (35%), Gaps = 42/196 (21%)
Query: 422 DFDAKYCI----GSGRHGSVYRA-ELPSKEFLAVKKFN--SPLPSDQIADQKEFFAEIEA 474
+ Y I GSG+ V + E + A K S + ++E E+
Sbjct: 9 KVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSI 68
Query: 475 LTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDIS---------- 524
L ++ H NI+ + + +LI E + G L L+ + E + +
Sbjct: 69 LRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGV 128
Query: 525 ----SKNVL-LDL-----------EHKAHV--SDFGIAKFLKPDSSNWSALVGTYRYVAP 566
+K + DL H+ DFG+A ++ + + GT +VAP
Sbjct: 129 NYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE-FKNIFGTPEFVAP 187
Query: 567 ------DYRKKCDVYS 576
+ D++S
Sbjct: 188 EIVNYEPLGLEADMWS 203
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 8e-13
Identities = 26/230 (11%), Positives = 63/230 (27%), Gaps = 26/230 (11%)
Query: 428 CIGSGRHGSVYRAELPSKEFL----AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI 483
G ++A L A+ + +E + L++I +
Sbjct: 38 FHGGVPPLQFWQAL---DTALDRQVALTFVDPQGVLPD-DVLQETLSRTLRLSRIDKPGV 93
Query: 484 VKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-LDISSKNVLLDLEHKAHVSDFG 542
+ +++ E+++ GSL + + + + AH G
Sbjct: 94 ARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPVGAIRAMQS-LAAAADA-AH--RAG 149
Query: 543 IA-KFLKPD----SSNWSALVGTYRYVAP-DYRKKCDVYSFRVLALEVIKGKHPRGFVSS 596
+A P S + ++ + + + D+ ++ + P +
Sbjct: 150 VALSIDHPSRVRVSIDGDVVLAYPATMPDANPQ--DDIRGIGASLYALLVNRWP--LPEA 205
Query: 597 ILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRP 646
+ S R + P+ + I VA + R
Sbjct: 206 GVRSGLAPAER---DTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIRS 252
|
| >3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 8e-13
Identities = 40/196 (20%), Positives = 72/196 (36%), Gaps = 42/196 (21%)
Query: 422 DFDAKYCI----GSGRHGSVYRA-ELPSKEFLAVKKFN--SPLPSDQIADQKEFFAEIEA 474
+ Y + GSG+ V + + + + A K S + ++E E+
Sbjct: 2 MVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNI 61
Query: 475 LTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDIS---------- 524
L +IRH NI+ + + +LI E + G L L+ + E + +
Sbjct: 62 LREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGV 121
Query: 525 ----SKNVL-LDL-------EHKAH------VSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
SK + DL K + DFGIA ++ + + + GT +VAP
Sbjct: 122 HYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNE-FKNIFGTPEFVAP 180
Query: 567 ------DYRKKCDVYS 576
+ D++S
Sbjct: 181 EIVNYEPLGLEADMWS 196
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 46/197 (23%), Positives = 70/197 (35%), Gaps = 47/197 (23%)
Query: 422 DFDAKYC----IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKE-FFAEIEAL 475
D + +GSG G V+ E S +K + D+ E AEIE L
Sbjct: 19 TIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKT----INKDRSQVPMEQIEAEIEVL 74
Query: 476 TKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL----------ATNLSNDAAAEEL---- 521
+ H NI+K + + ++ E + G L LS AE +
Sbjct: 75 KSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMM 134
Query: 522 --------------DISSKNVLLDLEHKAH---VSDFGIAKFLKPDSSNWSALVGTYRYV 564
D+ +N+L + DFG+A+ K D + GT Y+
Sbjct: 135 NALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEH-STNAAGTALYM 193
Query: 565 AP-----DYRKKCDVYS 576
AP D KCD++S
Sbjct: 194 APEVFKRDVTFKCDIWS 210
|
| >3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 55/294 (18%), Positives = 96/294 (32%), Gaps = 93/294 (31%)
Query: 429 IGSGRHGSVYRAEL----PSKEFL--AVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
+G R G VY+ L P ++ A+K ++EF E +++H N
Sbjct: 17 LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLK-DKAEGP--LREEFRHEAMLRARLQHPN 73
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSL-------------ATNLSNDAAAEEL-------- 521
+V G + + +I+ Y G L + + L
Sbjct: 74 VVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHL 133
Query: 522 -------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTY- 561
D++++NVL+ + +SD G+ + + Y
Sbjct: 134 VAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAAD--------YYK 185
Query: 562 ---------RYVAP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVIN 605
R++AP Y K D++S+ V+ EV G P N
Sbjct: 186 LLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQ---------PYCGYSN 236
Query: 606 MRLDEMLDP--RLPPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EM+ LP P P + ++M C + P RP + I +L
Sbjct: 237 QDVVEMIRNRQVLPCPDDCPA---WVYALMI---ECWNEFPSRRPRFKDIHSRL 284
|
| >2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 42/196 (21%)
Query: 422 DFDAKYCI----GSGRHGSVYRA-ELPSKEFLAVKKFN--SPLPSDQIADQKEFFAEIEA 474
+ D Y GSG+ V + E + A K S + +++ E+
Sbjct: 8 NVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSI 67
Query: 475 LTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAE--------- 519
L +I+H N++ + + ILI E + G L +L+ + A E
Sbjct: 68 LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGV 127
Query: 520 ---------ELDISSKNVLLDLEHKAH----VSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
D+ +N++L + + DFG+A + + + + GT +VAP
Sbjct: 128 YYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNE-FKNIFGTPEFVAP 186
Query: 567 ------DYRKKCDVYS 576
+ D++S
Sbjct: 187 EIVNYEPLGLEADMWS 202
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 43/201 (21%), Positives = 70/201 (34%), Gaps = 47/201 (23%)
Query: 421 NDFDAKYCI----GSGRHGSVYRA-ELPSKEFLAVKKFN----SPLPSDQIADQKEFFAE 471
+Y + GSG G V A E + + +A++ + + + + E
Sbjct: 131 KALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETE 190
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL---- 521
IE L K+ H I+K F A ++ E ++ G L L
Sbjct: 191 IEILKKLNHPCIIKIKNFFD-AEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQML 249
Query: 522 --------------DISSKNVLLDLEHKAH---VSDFGIAKFLKPDSSNWSALVGTYRYV 564
D+ +NVLL + + ++DFG +K L S L GT Y+
Sbjct: 250 LAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSL-MRTLCGTPTYL 308
Query: 565 AP---------DYRKKCDVYS 576
AP Y + D +S
Sbjct: 309 APEVLVSVGTAGYNRAVDCWS 329
|
| >1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 43/198 (21%), Positives = 66/198 (33%), Gaps = 44/198 (22%)
Query: 422 DFDAKYCI----GSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
+ KY I G G G V+R E SK+ K + DQ EI L
Sbjct: 2 ELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKV-----KGTDQVLVKKEISILN 56
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSL-------ATNLSNDAAAE---------- 519
RHRNI+ + ++I+E++ + A L+
Sbjct: 57 IARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQ 116
Query: 520 --------ELDISSKNVLLDLEHKAHV--SDFGIAKFLKPDSSNWSALVGTYRYVAP--- 566
DI +N++ + + +FG A+ LKP N+ L Y AP
Sbjct: 117 FLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG-DNFRLLFTAPEYYAPEVH 175
Query: 567 ---DYRKKCDVYSFRVLA 581
D++S L
Sbjct: 176 QHDVVSTATDMWSLGTLV 193
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 57/297 (19%), Positives = 103/297 (34%), Gaps = 95/297 (31%)
Query: 429 IGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHR 481
+G+G G V A + +AVK PS + +++ +E++ L+ + H
Sbjct: 31 LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK---PSAHLTEREALMSELKVLSYLGNHM 87
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSL-------------ATNLSNDAAAEELDISSK-- 526
NIV G C+ +++I EY G L + +EL + +
Sbjct: 88 NIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDL 147
Query: 527 ---------------------------NVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559
N+LL + DFG+A+ +K D
Sbjct: 148 LSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKND--------S 199
Query: 560 TY----------RYVAP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPS 602
Y +++AP + DV+S+ + E+ G P +
Sbjct: 200 NYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPV------ 253
Query: 603 VINMRLDEMLDP--RLPPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ + +M+ R+ P P ++ IM+ +C D P RPT + I Q +
Sbjct: 254 --DSKFYKMIKEGFRMLSPEHAPA---EMYDIMK---TCWDADPLKRPTFKQIVQLI 302
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 52/254 (20%), Positives = 88/254 (34%), Gaps = 50/254 (19%)
Query: 429 IGSGRHGSVYRAELPSKE-FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G G G VY AE +E +A+K + L SD + + E +++ ++V +
Sbjct: 42 VGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVF-RTRMQREARTAGRLQEPHVVPIH 100
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAA-------------AEEL-----------DI 523
F + + LA L L D+
Sbjct: 101 DFGEIDGQLYVDMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAAGATHRDV 160
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW---SALVGTYRYVAP--------DYRKKC 572
+N+L+ + A++ DFGIA VGT Y+AP YR
Sbjct: 161 KPENILVSADDFAYLVDFGIASAT--TDEKLTQLGNTVGTLYYMAPERFSESHATYR--A 216
Query: 573 DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
D+Y+ + E + G P + SV+ +++ P PS G ++
Sbjct: 217 DIYALTCVLYECLTGSPP--YQGD---QLSVMGAHINQ--AI--PRPSTVRPGIPVAFDA 267
Query: 633 VAFSCLDVSPESRP 646
V + +PE R
Sbjct: 268 VIARGMAKNPEDRY 281
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-12
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
Query: 174 TLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGH 233
+ + N I P L DLS N I P F L SL L+L GN++
Sbjct: 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TE 94
Query: 234 LPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKE-LGKLVQ 291
LP + L L+ L L+ N+ + L ++ +L L+ L L + +Q + K L
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRA 153
Query: 292 LSELELSHN 300
+ + L+ N
Sbjct: 154 IQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 1e-11
Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 10/119 (8%)
Query: 186 IPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLTKL 244
+P I + L N I P F L ++ L NQ+ L + L L
Sbjct: 30 LPETITEI------RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSL 82
Query: 245 EFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL-GKLVQLSELELSHNFL 302
L L N+ + L L L L L+ + I L + L L+ L L N L
Sbjct: 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKL 140
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 9e-10
Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 7/134 (5%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFEN 61
+ E+ L N + + P K L ++ L NQ L L SL L L+ N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90
Query: 62 NLSGSIPPSV-GNL-MLTVLALENNHFTGNLRHNICRN-GALERVIVGGNHFRGPIPKCL 118
++ +P S+ L L +L L N LR + ++ L + + N +
Sbjct: 91 KIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148
Query: 119 RNCPNLVRISLEGN 132
+ + L N
Sbjct: 149 SPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
LR + L +N ++ L P L+SL L L GN+ LP S+ L SL+ L L
Sbjct: 54 PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLN 112
Query: 60 ENNLSGSIPPSV-GNLM-LTVLALENNHFT 87
N ++ + +L L +L+L +N
Sbjct: 113 ANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 34/156 (21%), Positives = 54/156 (34%), Gaps = 32/156 (20%)
Query: 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNN 181
+ I LE N ++ AF Y L +D+S+N ++S
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN--------------QISE------- 70
Query: 182 ITRSIPLEIG---NLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI 238
L L +LN L N I F L SL L+L N++ L +
Sbjct: 71 ------LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI-NCLRVDA 123
Query: 239 -GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDL 273
L L L+L N+ ++ + L + + L
Sbjct: 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 7e-08
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFE 60
L +L L L N +T L + L SL L L N+ L +L +L L L++
Sbjct: 79 LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYD 137
Query: 61 NNLSGSIPPSVGNLM--LTVLALENNHF 86
N L +I + + + + L N F
Sbjct: 138 NKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 247 LNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL-GKLVQLSELELSHNFLGRE 305
+ L N + P + KL +DLS Q I EL + L L+ L L N + E
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKI-TE 94
Query: 306 IPSQI 310
+P +
Sbjct: 95 LPKSL 99
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 60/297 (20%), Positives = 100/297 (33%), Gaps = 96/297 (32%)
Query: 429 IGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHR 481
+G G G V A+ + +AVK + + + +E++ L I H
Sbjct: 35 LGRGAFGQVIEADAFGIDKTATCRTVAVKMLK-EGATHS--EHRALMSELKILIHIGHHL 91
Query: 482 NIVKFYGFCSHARHSI-LIYEYLKRGSLATNL-------------SNDAAAEELD----- 522
N+V G C+ + +I E+ K G+L+T L D + L
Sbjct: 92 NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLI 151
Query: 523 ------------ISSK----------NVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560
++S+ N+LL ++ + DFG+A+ + D
Sbjct: 152 CYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKD--------PD 203
Query: 561 Y----------RYVAP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSV 603
Y +++AP R + DV+SF VL E+ G P P V
Sbjct: 204 YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGAS---------PYPGV 254
Query: 604 -INMRLDEMLDP--RLPPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
I+ L R+ P ++ M C P RPT + + L
Sbjct: 255 KIDEEFCRRLKEGTRMRAPDYTTP---EMYQTML---DCWHGEPSQRPTFSELVEHL 305
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 43/189 (22%), Positives = 68/189 (35%), Gaps = 43/189 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFN----SPLPSDQIADQKEFFAEIEALTKIRHRNI 483
+GSG G V A E + + +A+K + + + + EIE L K+ H I
Sbjct: 18 LGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI 77
Query: 484 VKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL---------------- 521
+K F A ++ E ++ G L L
Sbjct: 78 IKIKNFF-DAEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGII 136
Query: 522 --DISSKNVLLDLEHKAH---VSDFGIAKFLKPDSSNWSALVGTYRYVAP---------D 567
D+ +NVLL + + ++DFG +K L S L GT Y+AP
Sbjct: 137 HRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSL-MRTLCGTPTYLAPEVLVSVGTAG 195
Query: 568 YRKKCDVYS 576
Y + D +S
Sbjct: 196 YNRAVDCWS 204
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 5e-12
Identities = 41/301 (13%), Positives = 89/301 (29%), Gaps = 79/301 (26%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFN-------------SPLPSDQIADQK 466
IND+ + G+ + E +F A+KK+ + +
Sbjct: 30 INDYRIIRTLNQGKFNKIILCE-KDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYD 88
Query: 467 EFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------------ATNL 512
+F E++ +T I++ + G ++ +IYEY++ S+ +
Sbjct: 89 DFKNELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFI 148
Query: 513 SNDAAAE---EL----------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553
+ D+ N+L+D + +SDFG ++++
Sbjct: 149 PIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFGESEYMV--DKK 206
Query: 554 WSALVGTYRYVAP--------DYRKKCDVYSFRVLALEVIKGKHP--------------- 590
GTY ++ P K D++S + + P
Sbjct: 207 IKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIR 266
Query: 591 RGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQT 650
+ L + ++ S + + + L +P R T +
Sbjct: 267 TKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDI-DFLKLF------LRKNPAERITSED 319
Query: 651 I 651
Sbjct: 320 A 320
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 6e-12
Identities = 39/193 (20%), Positives = 63/193 (32%), Gaps = 44/193 (22%)
Query: 422 DFDAKYCI----GSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
+ + GSG V+ + + + A+K EI L
Sbjct: 6 NIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKK----SPAFRDSSLENEIAVLK 61
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL--------- 521
KI+H NIV H L+ + + G L + A+ +
Sbjct: 62 KIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKY 121
Query: 522 ---------DISSKNVLL-DLEHKAHV--SDFGIAKFLKPDSSNWSALVGTYRYVAP--- 566
D+ +N+L E + + +DFG++K + S GT YVAP
Sbjct: 122 LHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQN--GIMSTACGTPGYVAPEVL 179
Query: 567 ---DYRKKCDVYS 576
Y K D +S
Sbjct: 180 AQKPYSKAVDCWS 192
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 8e-12
Identities = 45/249 (18%), Positives = 83/249 (33%), Gaps = 54/249 (21%)
Query: 366 NHHPQSGCISVIAYVPIIWDQANREGQRSPQNSQGLLSILSFKGKFDYVEIIRAINDFDA 425
+HH S + + +S + + + DY +
Sbjct: 3 HHHHHSSGVDL---------GTENLYFQSMSSVTASAAPGTASLVPDYWIDGSNRDALSD 53
Query: 426 KYCI----GSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
+ + G G VYR + +++ A+K + D+K EI L ++ H
Sbjct: 54 FFEVESELGRGATSIVYRCKQKGTQKPYALKVLK------KTVDKKIVRTEIGVLLRLSH 107
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL------------- 521
NI+K L+ E + G L S AA+ +
Sbjct: 108 PNIIKLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHEN 167
Query: 522 -----DISSKNVLL-DLEHKAHV--SDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
D+ +N+L A + +DFG++K ++ + GT Y AP+
Sbjct: 168 GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVL-MKTVCGTPGYCAPEILRGCA 226
Query: 568 YRKKCDVYS 576
Y + D++S
Sbjct: 227 YGPEVDMWS 235
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 51/307 (16%), Positives = 93/307 (30%), Gaps = 111/307 (36%)
Query: 429 IGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
IG G G V++A +AVK S Q +F E + + + N
Sbjct: 55 IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLK-EEASAD--MQADFQREAALMAEFDNPN 111
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSLATNL---------------------SNDAAAEEL 521
IVK G C+ + L++EY+ G L L + L
Sbjct: 112 IVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPL 171
Query: 522 ---------------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554
D++++N L+ ++DFG+++ +
Sbjct: 172 SCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNI------- 224
Query: 555 SALVGTYRYVAPDYRK-----------------------KCDVYSFRVLALEVI-KGKHP 590
Y A Y+ + DV+++ V+ E+ G
Sbjct: 225 --------YSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQ- 275
Query: 591 RGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTM 648
P + + + + L P + +L ++M C P RP+
Sbjct: 276 --------PYYGMAHEEVIYYVRDGNILACP-ENCPLELYNLMR---LCWSKLPADRPSF 323
Query: 649 QTITQQL 655
+I + L
Sbjct: 324 CSIHRIL 330
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 1e-11
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 5/130 (3%)
Query: 174 TLNVSMNNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIG 232
L ++ N T I L L + + S N I F + + +++L N+L
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 233 HLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKE-LGKLV 290
+ ++ L L+ L L +NR + + +S L + L L Q I + L
Sbjct: 96 -VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLH 153
Query: 291 QLSELELSHN 300
LS L L N
Sbjct: 154 SLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 5e-11
Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 8/126 (6%)
Query: 185 SIPLEIGNLSTLNEFDLSLNHIVGKIPK-EFGKLNSLTKLILRGNQLIGHLPSEI-GSLT 242
IP I E L+ N F KL L K+ N+ I + +
Sbjct: 25 KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGAS 81
Query: 243 KLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL-GKLVQLSELELSHNF 301
+ + L++NR ++ + L L L L + I + + L + L L N
Sbjct: 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ 140
Query: 302 LGREIP 307
+ +
Sbjct: 141 I-TTVA 145
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
L LR+++ +N +T + + ++ L N+ ++ + L SL+ L L
Sbjct: 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLR 113
Query: 60 ENNLSGSIPPSV-GNL-MLTVLALENNHFT 87
N ++ + L + +L+L +N T
Sbjct: 114 SNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-08
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFE 60
+ + E+ L N L + L+SL L L N+ + + LSS+R L L++
Sbjct: 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYD 138
Query: 61 NNLSGSIPPSVGNLM--LTVLALENNHF 86
N ++ ++ P + + L+ L L N F
Sbjct: 139 NQIT-TVAPGAFDTLHSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 3 TNLRELHLRDNYLTGLIPTET-WNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFE 60
EL L +N T L T L L K+ N+ + S + + L
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90
Query: 61 NNLSGSIPPSV-GNLM-LTVLALENNHFT 87
N L ++ + L L L L +N T
Sbjct: 91 NRLE-NVQHKMFKGLESLKTLMLRSNRIT 118
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 7e-05
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETW-NLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFL 58
L +L+ L LR N +T + +++ L S+ L L NQ ++ L SL L L
Sbjct: 103 GLESLKTLMLRSNRITCV-GNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNL 160
Query: 59 FEN 61
N
Sbjct: 161 LAN 163
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 43/185 (23%), Positives = 63/185 (34%), Gaps = 46/185 (24%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKE--FFAEIEALTKIR-HRNIV 484
+G G + S + AVK I+ + E EI AL H NIV
Sbjct: 19 LGEGSFSICRKCVHKKSNQAFAVK---------IISKRMEANTQKEITALKLCEGHPNIV 69
Query: 485 KFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL----------------- 521
K + H+ L+ E L G L + S A+ +
Sbjct: 70 KLHEVFHDQLHTFLVMELLNGGELFERIKKKKHFSETEASYIMRKLVSAVSHMHDVGVVH 129
Query: 522 -DISSKNVLL-DLEHKAHV--SDFGIAKFLKPDSSNWSALVGTYRYVAP------DYRKK 571
D+ +N+L D + DFG A+ PD+ T Y AP Y +
Sbjct: 130 RDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDES 189
Query: 572 CDVYS 576
CD++S
Sbjct: 190 CDLWS 194
|
| >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 45/203 (22%)
Query: 416 IIRAINDFDAKYCI-----GSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFF 469
+++ +F+ Y + G G+ V + + + A K + E
Sbjct: 19 YFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQD--CRAEIL 76
Query: 470 AEIEALTKIRHR-NIVKFYGFCSHARHSILIYEYLKRGSL--------ATNLSNDAAAE- 519
EI L + ++ + + ILI EY G + A +S +
Sbjct: 77 HEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRL 136
Query: 520 -----------------ELDISSKNVLLDLEHKAH---VSDFGIAKFLKPDSSNWSALVG 559
LD+ +N+LL + + DFG+++ + ++G
Sbjct: 137 IKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACE-LREIMG 195
Query: 560 TYRYVAP------DYRKKCDVYS 576
T Y+AP D+++
Sbjct: 196 TPEYLAPEILNYDPITTATDMWN 218
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-11
Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 185 SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLTK 243
S+P I + L N I P F L +L +L L NQL G LP + SLT+
Sbjct: 33 SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQ 89
Query: 244 LEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLG 303
L L+L TN+ + L L+ L L + + ELP+ + +L L+ L L N L
Sbjct: 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQL- 147
Query: 304 REIP 307
+ IP
Sbjct: 148 KSIP 151
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
+L NL+EL+L N L L +L L L LG NQ LPS+V L L+ LF+
Sbjct: 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMC 120
Query: 60 ENNLSGSIPPSVGNL-MLTVLALENN 84
N L+ +P + L LT LAL+ N
Sbjct: 121 CNKLT-ELPRGIERLTHLTHLALDQN 145
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
LT L L L N LT L L L +L + N+ LP + L+ L +L L +N
Sbjct: 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145
Query: 62 NLSGSIPPSV-GNLM-LTVLALENN 84
L SIP L LT L N
Sbjct: 146 QLK-SIPHGAFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 3/132 (2%)
Query: 143 GIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEI-GNLSTLNEFDL 201
GI N L + DN + L L + N + ++P+ + +L+ L DL
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDL 95
Query: 202 SLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPES 261
N + F +L L +L + N+L LP I LT L L L N+ S+ +
Sbjct: 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGA 154
Query: 262 LGNLLKLHYLDL 273
L L + L
Sbjct: 155 FDRLSSLTHAYL 166
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 6e-06
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFEN 61
TN + L+L DN +T L P +L +L +L LG NQ +LP V +L+ L L L N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN 98
Query: 62 NLSGSIPPSV-GNLM-LTVLALENNHFT 87
L+ +P +V L+ L L + N T
Sbjct: 99 QLT-VLPSAVFDRLVHLKELFMCCNKLT 125
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 3e-11
Identities = 34/289 (11%), Positives = 83/289 (28%), Gaps = 59/289 (20%)
Query: 414 VEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIE 473
V+ + + + + + E + S +I
Sbjct: 55 VKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSV-KIR 113
Query: 474 ALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------ 521
+ +N V S + + + ++ +L ++ + E+
Sbjct: 114 RMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQI 173
Query: 522 ---------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSS------------NW 554
D+ N+ ++ V DFG+ + D
Sbjct: 174 AEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATH 233
Query: 555 SALVGTYRYVAP------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRL 608
+ VGT Y++P +Y K D++S ++ E++ + + +
Sbjct: 234 TGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELL---YS-------FSTQMERVRII 283
Query: 609 DEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657
++ + + P + +++ L SP RP I + +F
Sbjct: 284 TDVRNLKFPLLFTQKYPQEHMMVQ---DMLSPSPTERPEATDIIENAIF 329
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 418 RAINDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
R + DF+ C+G G G V+ A+ A+K+ P ++ +++ E++AL
Sbjct: 3 RYLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLP---NRELAREKVMREVKALA 59
Query: 477 KIRHRNIVKFYGFCSHARH 495
K+ H IV+++
Sbjct: 60 KLEHPGIVRYFNAWLETPP 78
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 5e-11
Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 11/136 (8%)
Query: 210 IPKEFGKLNSLTKLILRGNQLIGHLPSE-IGSLTKLEFLNLSTNRFSSLIPESLGNLLKL 268
+LT+L + Q + HL + L +L L + + + P++ +L
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82
Query: 269 HYLDLSKYQFIQELPKELGKLVQLSELELSHN---------FLGREIPSQICSMECCEVF 319
L+LS + ++ L + + + L EL LS N +L R + + ++
Sbjct: 83 SRLNLS-FNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141
Query: 320 CTITNSVPTNNFLNCQ 335
C + +C
Sbjct: 142 CHGQGPLAHMPNASCG 157
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 1e-07
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 5/108 (4%)
Query: 169 CPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKE-FGKLNSLTKLILRG 227
S L + + + L E + + + L L L +
Sbjct: 7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65
Query: 228 NQLIGHLPSEIGS-LTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
+ + + + +L LNLS N SL +++ L L L LS
Sbjct: 66 SG-LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLS 111
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 1e-07
Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 1/88 (1%)
Query: 1 NLTNLRELHLRDNYLTGLIPTET-WNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLF 59
NL EL++ + + L L L + + R P + L L L
Sbjct: 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88
Query: 60 ENNLSGSIPPSVGNLMLTVLALENNHFT 87
N L +V L L L L N
Sbjct: 89 FNALESLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 6e-06
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
Query: 170 PKLSTLNVSMNNITRSIPLE-IGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGN 228
L+ L + + + L + L L + + + P F L++L L N
Sbjct: 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90
Query: 229 QLIGHLPSEIGSLTKLEFLNLSTNRF 254
L L + L+ L LS N
Sbjct: 91 ALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 6e-11
Identities = 44/202 (21%), Positives = 67/202 (33%), Gaps = 48/202 (23%)
Query: 415 EIIRAINDFDAKY----CIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFF 469
++ R F Y IG G + R + AVK + D E
Sbjct: 12 QLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIID-----KSKRDPTE-- 64
Query: 470 AEIEALTK-IRHRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL- 521
EIE L + +H NI+ ++ ++ E +K G L S A+ L
Sbjct: 65 -EIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQKFFSEREASAVLF 123
Query: 522 -----------------DISSKNVLLDLEHKAH----VSDFGIAKFLKPDSSNWSALVGT 560
D+ N+L E + DFG AK L+ ++ T
Sbjct: 124 TITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYT 183
Query: 561 YRYVAP------DYRKKCDVYS 576
+VAP Y CD++S
Sbjct: 184 ANFVAPEVLERQGYDAACDIWS 205
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 8e-11
Identities = 43/208 (20%), Positives = 76/208 (36%), Gaps = 58/208 (27%)
Query: 422 DFDAKY-----CIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEAL 475
F+ Y +G G H V L + + AVK + + F E+E L
Sbjct: 9 RFEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKI----IEKQPGHIRSRVFREVEML 64
Query: 476 TKIR-HRNIVKFYGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAEEL-DISS-- 525
+ + HRN+++ F L++E ++ GS+ + + A+ + D++S
Sbjct: 65 YQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKRRHFNELEASVVVQDVASAL 124
Query: 526 -----KNV---------LLDLEHKAHVS-----DFGIAKFLKPDSS-------NWSALVG 559
K + +L EH VS DF + +K + G
Sbjct: 125 DFLHNKGIAHRDLKPENIL-CEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCG 183
Query: 560 TYRYVAP-----------DYRKKCDVYS 576
+ Y+AP Y K+CD++S
Sbjct: 184 SAEYMAPEVVEAFSEEASIYDKRCDLWS 211
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 56/303 (18%), Positives = 99/303 (32%), Gaps = 102/303 (33%)
Query: 429 IGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHR 481
+GSG G V A +AVK ++++ +E++ +T++ H
Sbjct: 53 LGSGAFGKVMNATAYGISKTGVSIQVAVKMLK---EKADSSEREALMSELKMMTQLGSHE 109
Query: 482 NIVKFYGFCSHARHSILIYEYLKRGSL--------------ATNLSNDAAAEELD----- 522
NIV G C+ + LI+EY G L N EE +
Sbjct: 110 NIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVL 169
Query: 523 ------------------ISSK----------NVLLDLEHKAHVSDFGIAKFLKPDSSNW 554
+ K NVL+ + DFG+A+ + D
Sbjct: 170 TFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSD---- 225
Query: 555 SALVGTY----------RYVAP---DYRK---KCDVYSFRVLALEVI-KGKHPRGFVSSI 597
Y +++AP K DV+S+ +L E+ G
Sbjct: 226 ----SNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGV--------- 272
Query: 598 LPSPSV-INMRLDEMLDP--RLPPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTIT 652
P P + ++ +++ ++ P + ++ IM+ SC RP+ +T
Sbjct: 273 NPYPGIPVDANFYKLIQNGFKMDQPFYATE---EIYIIMQ---SCWAFDSRKRPSFPNLT 326
Query: 653 QQL 655
L
Sbjct: 327 SFL 329
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-10
Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 4/130 (3%)
Query: 175 LNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHL 234
L++ + L+ L +L N + F L L L L NQL L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98
Query: 235 PSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL-GKLVQL 292
P + LT+L+ L L N+ SL L KL L L+ Q +Q +P KL L
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNL 157
Query: 293 SELELSHNFL 302
L LS N L
Sbjct: 158 QTLSLSTNQL 167
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 4/150 (2%)
Query: 126 RISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRS 185
++ L+ + F LT+L++ N A + +L TL ++ N + S
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-S 97
Query: 186 IPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLTK 243
+PL + +L+ L++ L N + F +L L +L L NQL +P+ LT
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTN 156
Query: 244 LEFLNLSTNRFSSLIPESLGNLLKLHYLDL 273
L+ L+LSTN+ S+ + L KL + L
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 8e-07
Identities = 32/90 (35%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
LT L L+L N L L +L L LGL NQ SLP V +L+ L L+L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLG 115
Query: 60 ENNLSGSIPPSV--GNLMLTVLALENNHFT 87
N L S+P V L L L N
Sbjct: 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
+LT L +L+L N L L L L +L L NQ + S+P+ L++L+ L L
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 60 ENNLSGSIPPSVGNLM--LTVLALENNHF 86
N L S+P + + L + L N F
Sbjct: 164 TNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 4e-06
Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFE 60
LT L L L +N L L +L L KL LGGNQ + SLPS V L+ L+ L L
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNT 140
Query: 61 NNLSGSIPPSVGNLM--LTVLALENNHFT 87
N L SIP + + L L+L N
Sbjct: 141 NQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ 168
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 5e-06
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 221 TKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQ 280
KL L+ L + LTKL +LNL N+ +L +L +L L L+ Q +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LA 96
Query: 281 ELPKEL-GKLVQLSELELSHNFL 302
LP + L QL +L L N L
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQL 119
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 6e-06
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFEN 61
+ +L L+ L L L L L L NQ + +L + V +L+ L L L N
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANN 93
Query: 62 NLSGSIPPSV--GNLMLTVLALENNHFT 87
L+ S+P V L L L N
Sbjct: 94 QLA-SLPLGVFDHLTQLDKLYLGGNQLK 120
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-10
Identities = 46/125 (36%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 185 SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLTK 243
S+P I + DL N + F +L SLT+L L GN+L LP+ + LT
Sbjct: 21 SVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTS 77
Query: 244 LEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL-GKLVQLSELELSHNFL 302
L +LNLSTN+ SL L +L L L+ Q +Q LP + KL QL +L L N L
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 303 GREIP 307
+ +P
Sbjct: 137 -KSVP 140
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 7e-06
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 143 GIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGN-LSTLNEFDL 201
GI T+LD+ N+ + + L+ L + N + S+P + N L++L +L
Sbjct: 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNL 83
Query: 202 SLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPE 260
S N + F KL L +L L NQL LP + LT+L+ L L N+ S+
Sbjct: 84 STNQLQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142
Query: 261 SLGNLLKLHYLDL 273
L L Y+ L
Sbjct: 143 VFDRLTSLQYIWL 155
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 7e-06
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 175 LNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHL 234
L++ N++ L++L + L N + F KL SLT L L NQL L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-QSL 91
Query: 235 PSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQ 277
P+ + LT+L+ L L+TN+ SL L +L L L + Q
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFE 60
LT+L L+L N L L L L +L L NQ + SLP V L+ L+ L L++
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQ 133
Query: 61 NNLSGSIPPSV-GNLM-LTVLALENN 84
N L S+P V L L + L +N
Sbjct: 134 NQLK-SVPDGVFDRLTSLQYIWLHDN 158
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 55/262 (20%), Positives = 94/262 (35%), Gaps = 57/262 (21%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQI--ADQKEFFAEIEALTKIRHRNIVK 485
IG G V A + + +A+K + Q+ ++ F E+ + + H NIVK
Sbjct: 23 IGKGNFAKVKLARHILTGREVAIKI----IDKTQLNPTSLQKLFREVRIMKILNHPNIVK 78
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------ 521
+ + LI EY G + L +E
Sbjct: 79 LFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHR 138
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DYR-KKCDV 574
D+ ++N+LLD + ++DFG + A G Y AP Y + DV
Sbjct: 139 DLKAENLLLDADMNIKIADFGFSNEFTVG-GKLDAFCGAPPYAAPELFQGKKYDGPEVDV 197
Query: 575 YSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP---SPDVQGKLISIM 631
+S V+ ++ G P F L +R + +L + P S D + L+
Sbjct: 198 WSLGVILYTLVSGSLP--FDGQNLK-----ELR-ERVLRGKYRIPFYMSTDCE-NLLKRF 248
Query: 632 EVAFSCLDVSPESRPTMQTITQ 653
L ++P R T++ I +
Sbjct: 249 ------LVLNPIKRGTLEQIMK 264
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 38/204 (18%), Positives = 64/204 (31%), Gaps = 61/204 (29%)
Query: 421 NDFDAKY-----CIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEA 474
Y +G G +G V + + A+K + D + E++
Sbjct: 24 YAVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALK---------LLYDSPKARQEVDH 74
Query: 475 LTKI-RHRNIVKFYGFC---SHARHSI-LIYEYLKRGSL--------ATNLSNDAAAEEL 521
+ +IV H + + +I E ++ G L + AAE +
Sbjct: 75 HWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIM 134
Query: 522 ------------------DISSKNVLLDLEHKAHVS-----DFGIAKFLKPDSSNWSALV 558
D+ +N+L K + DFG AK ++
Sbjct: 135 RDIGTAIQFLHSHNIAHRDVKPENLL--YTSKEKDAVLKLTDFGFAKETTQNA--LQTPC 190
Query: 559 GTYRYVAP------DYRKKCDVYS 576
T YVAP Y K CD++S
Sbjct: 191 YTPYYVAPEVLGPEKYDKSCDMWS 214
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 5e-10
Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 14/155 (9%)
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
+ +RI E + +EA + L+ I ++ + L +S N
Sbjct: 7 IKDAIRIFEERKS--VVATEAEKVELHGMIPPIE------KMDATLSTLKACKHLALSTN 58
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240
NI + L + L L N I KI ++L +L + NQ I L S I
Sbjct: 59 NIEKISSLS--GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQ-IASL-SGIEK 113
Query: 241 LTKLEFLNLSTNRFSSLIP-ESLGNLLKLHYLDLS 274
L L L +S N+ ++ + L L KL L L+
Sbjct: 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-09
Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 14/128 (10%)
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNH--IVGKIPKEFGKLNSLTKLILRGNQL--IGHLP 235
+ I + + + +L I K+ L + L L N + I L
Sbjct: 9 DAIRIFEERKSVVATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKISSL- 66
Query: 236 SEIGSLTKLEFLNLSTNRFSSLIPESLGNLL-KLHYLDLSKYQFIQELPKELGKLVQLSE 294
+ L L+L N + E+L + L L +S Y I L + KLV L
Sbjct: 67 ---SGMENLRILSLGRNLIKKI--ENLDAVADTLEELWIS-YNQIASL-SGIEKLVNLRV 119
Query: 295 LELSHNFL 302
L +S+N +
Sbjct: 120 LYMSNNKI 127
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 220 LTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFI 279
+L I + + + +L + L LSTN + SL + L L L + I
Sbjct: 27 KVELHGMIPP-IEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNL-I 82
Query: 280 QELPKELGKLVQLSELELSHNFLGREIPSQICSMECCE 317
+++ L EL +S+N + + + +E
Sbjct: 83 KKIENLDAVADTLEELWISYNQI-----ASLSGIEKLV 115
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 4/114 (3%)
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177
L NL +SL N ++ I + L L IS N S K L L +
Sbjct: 66 LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYM 122
Query: 178 SMNNITRSIPLE-IGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL 230
S N IT ++ + L L + L+ N + + +++ R L
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 27/132 (20%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L + L L N + + +++L L LG N + + + +L L++
Sbjct: 46 TLKACKHLALSTNNIEKISSLS--GMENLRILSLGRNLIK-KIENLDAVADTLEELWISY 102
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N ++ S+ + L VL + NN I G ++ L
Sbjct: 103 NQIA-SLSGIEKLVNLRVLYMSNN--------KITNWGEID---------------KLAA 138
Query: 121 CPNLVRISLEGN 132
L + L GN
Sbjct: 139 LDKLEDLLLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+ NLR L L N + + + +L +L + NQ SL S + L +LR L++
Sbjct: 68 GMENLRILSLGRNLIKKIENLDA-VADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSN 124
Query: 61 NNLS--GSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVI 104
N ++ G I L L L N + + N + V+
Sbjct: 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 6e-10
Identities = 43/254 (16%), Positives = 73/254 (28%), Gaps = 62/254 (24%)
Query: 428 CIGSGRHGSVYRAE---LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
CI G G +Y A + + + +K + S Q AE + L ++ H +IV
Sbjct: 87 CIAHGGLGWIYLALDRNVNGRP-VVLKGL---VHSGDAEAQAMAMAERQFLAEVVHPSIV 142
Query: 485 KFYGFCSHARHSI-----LIYEYLKRGSLAT----NLSNDAAAEEL-------------- 521
+ + F H ++ EY+ SL L A L
Sbjct: 143 QIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHSIG 202
Query: 522 ----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP-----DYRKKC 572
D+ +N++L E + + D G + +S L GT + AP
Sbjct: 203 LVYNDLKPENIMLT-EEQLKLIDLGAVSRI--NSFG--YLYGTPGFQAPEIVRTGPTVAT 257
Query: 573 DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIME 632
D+Y+ + + P S
Sbjct: 258 DIYTVGRTLAALTLDLPT--RNG-------------RYVDGLPEDDPVLKTYD---SYGR 299
Query: 633 VAFSCLDVSPESRP 646
+ +D P R
Sbjct: 300 LLRRAIDPDPRQRF 313
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 6e-10
Identities = 99/593 (16%), Positives = 175/593 (29%), Gaps = 209/593 (35%)
Query: 47 VGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALE--NNHFTGN---LRHNICRNGALE 101
V + + Y FL + PS M+T + +E + + N ++N+ R L+
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPS----MMTRMYIEQRDRLYNDNQVFAKYNVSR---LQ 135
Query: 102 RVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFG-------IYLNLTFLDIS 154
+ + + L + ++G + G G + L+
Sbjct: 136 PYLK--------LRQALLELRPAKNVLIDG--VLG-----SGKTWVALDVCLSYKVQCKM 180
Query: 155 DNNFFGEIASNW---GKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIP 211
D F W C T+ + + I N ++ ++ ++ + I
Sbjct: 181 DFKIF------WLNLKNCNSPETVLEMLQKLLYQID---PNWTSRSDHSSNIKLRIHSIQ 231
Query: 212 KEFGKL-------NSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLS-----TNRFSSLI- 258
E +L N L L+L + + NLS T RF +
Sbjct: 232 AELRRLLKSKPYENCL--LVLL----------NVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 259 ---------------------PESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELEL 297
E LLK YLD Q+LP+E+ + + L
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCR----PQDLPREV---LTTNPRRL 330
Query: 298 SHNFLGREIPSQICSME-----CCEVFCTITNSVPTNNFLNCQKGYACQKVVLTFQQFST 352
S + I + + + C+ TI S LN + +K+ F + S
Sbjct: 331 S--IIAESIRDGLATWDNWKHVNCDKLTTIIES-----SLNVLEPAEYRKM---FDRLS- 379
Query: 353 SAKICPNLSRLPTNHHPQSGCISVIAYVPIIWDQANREG---------QRS---PQNSQG 400
+ P + +PT +++ +IW + + S Q +
Sbjct: 380 ---VFPPSAHIPT---------ILLS---LIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 401 LLSILSFKGKFDYVEIIRAINDFDAKYCIGSGRHGSV---YRA--ELPSKEFLAVKKFNS 455
+SI S Y+E+ + + A H S+ Y S +
Sbjct: 425 TISIPSI-----YLELKVKLENEYAL-------HRSIVDHYNIPKTFDSDDL-------I 465
Query: 456 PLPSDQ-----------IADQKEFFAEIEAL--------TKIRHRNIVKFYGFCSHARHS 496
P DQ + E + KIRH +A S
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD------STAWNASGS 519
Query: 497 IL-------IYE-YLKRGSLATNLSNDAAAEELDISSKNVLLDLEHKAHVSDF 541
IL Y+ Y+ ND E L + + L +E S +
Sbjct: 520 ILNTLQQLKFYKPYICD--------NDPKYERLVNAILDFLPKIEENLICSKY 564
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 3e-06
Identities = 74/506 (14%), Positives = 146/506 (28%), Gaps = 167/506 (33%)
Query: 2 LTNLRE--LHLRDN-YLT-------GLIPTETWNLKS-LVKLGLGGNQFRGSLPS----- 45
LR+ L LR + G K+ + + + +
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSG---------KTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 46 SVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICR-NGALERVI 104
++ N +S + L I P+ + + N++ I L R++
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNW---------TSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 105 VGGNHFRGPIPKCL---RN-------------CPNLV-----------------RISLEG 131
+ CL N C L+ ISL+
Sbjct: 239 KSKPY-----ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 132 NNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM------NNITRS 185
++M T E + L +LD + E+ + +S+ + +
Sbjct: 294 HSMTLTPDEVKSLLLK--YLDCRPQDLPREV------L-TTNPRRLSIIAESIRDGLATW 344
Query: 186 IPLEIGNLSTLNE-FDLSLNHIVGKIPKEFGKL-NSLTKLILRGNQLIGHLPSEIGSLTK 243
+ N L + SLN + P E+ K+ + L+ + + I P+ + L+
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRLS--VFPPSAHI---PTIL--LSL 394
Query: 244 L--------------EFLNLS-----TNRFSSLIP-------ESLGNLLKLHYLDLSKYQ 277
+ + S + IP L N LH + Y
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 278 FIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEVFCTITNSVPTNNFLN---- 333
+ + L+ + ++ +G + I E +F + FL+
Sbjct: 455 IPKTFDSD--DLIPPYLDQYFYSHIGHHL-KNIEHPERMTLFRMV--------FLDFRFL 503
Query: 334 ----CQKGYACQK---VVLTFQQFSTSAK-ICPN--------------LSRLPTN-HHPQ 370
A ++ T QQ IC N L ++ N +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 371 SGCISVIAYVP---IIWDQANREGQR 393
+ IA + I+++A+++ QR
Sbjct: 564 YTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 6e-10
Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 15/173 (8%)
Query: 140 EAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIG---NLSTL 196
++ + ++++ P + L + N + I L+ L
Sbjct: 35 VTQNELNSIDQIIANNSDIKSVQGIQ--YLPNVRYLALGGNKLHD-----ISALKELTNL 87
Query: 197 NEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFS 255
L+ N + F KL +L +L+L NQL LP + LT L +LNL+ N+
Sbjct: 88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQ 146
Query: 256 SLIPESLGNLLKLHYLDLSKYQFIQELPKEL-GKLVQLSELELSHNFLGREIP 307
SL L L LDLS Q Q LP+ + KL QL +L L N L + +P
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQL-KSVP 197
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 9e-08
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 14/131 (10%)
Query: 174 TLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGH 233
N+ ++T + L+++++ + + I K + L ++ L L GN+L
Sbjct: 23 KANLKKKSVT-DAVTQNE-LNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKL--- 75
Query: 234 LPSEIG---SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL-GKL 289
+I LT L +L L+ N+ SL L L L L + Q +Q LP + KL
Sbjct: 76 --HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKL 132
Query: 290 VQLSELELSHN 300
L+ L L+HN
Sbjct: 133 TNLTYLNLAHN 143
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 7e-07
Identities = 35/90 (38%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGN-LSSLRYLFLF 59
LTNL L L N L L L +L +L L NQ + SLP V + L++L YL L
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLA 141
Query: 60 ENNLSGSIPPSV-GNLM-LTVLALENNHFT 87
N L S+P V L LT L L N
Sbjct: 142 HNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ 170
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFE 60
L N+R L L N L + + L +L L L GNQ + SLP+ V L++L+ L L E
Sbjct: 62 LPNVRYLALGGNKLHDISALK--ELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVE 118
Query: 61 NNLSGSIPPSVGNLM--LTVLALENNHFT 87
N L S+P V + + LT L L +N
Sbjct: 119 NQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ 146
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 51/239 (21%), Positives = 85/239 (35%), Gaps = 61/239 (25%)
Query: 429 IGSGRHGSVYRAE---LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
+G G V+ A +AVK + L D + F E + + H IV
Sbjct: 20 LGFGGMSEVHLARDLRD--HRDVAVKVLRADLARDPSFYLR-FRREAQNAAALNHPAIVA 76
Query: 486 FY--GFCSHARHSI--LIYEYLKRGSLAT------NLSNDAAAEEL-------------- 521
Y G + ++ EY+ +L ++ A E +
Sbjct: 77 VYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNG 136
Query: 522 ----DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW---SALVGTYRYVAP-------- 566
D+ N+++ + V DFGIA+ + ++ +A++GT +Y++P
Sbjct: 137 IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSV 196
Query: 567 DYRKKCDVYSFRVLALEVIKGKHPRGF------------VSSILPSPSVINMRLDEMLD 613
D R DVYS + EV+ G+ P F V PS + L LD
Sbjct: 197 DARS--DVYSLGCVLYEVLTGEPP--FTGDSPVSVAYQHVREDPIPPSARHEGLSADLD 251
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 60/359 (16%), Positives = 112/359 (31%), Gaps = 79/359 (22%)
Query: 1 NLTNLRELHLRDNYLT-----GLIPTETWNLKSLVKLGLGGNQFRGS--------LPSSV 47
+ L L N L LI S+ L L GN L +
Sbjct: 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA-- 77
Query: 48 GNLSSLRYLFLFENNLSGSIPPSVG------NLMLTVLALENNHFTGNLRHNICRNGALE 101
+++ L L N LS + +TVL L N F+
Sbjct: 78 -IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK------------ 124
Query: 102 RVIVGGNHFRGPIPKCLRNCP-NLVRISLEGNNMRGT----ISEAF-GIYLNLTFLDISD 155
+ + N P ++ ++L GN++ + + I N+ L++
Sbjct: 125 ----SSSE----FKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176
Query: 156 NNFFGE----IASNWGKCPK-LSTLNVSMNNITRSIPLEIG-----NLSTLNEFDLSLNH 205
NN + +A P +++L++S N + E+ + + +L LN
Sbjct: 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236
Query: 206 IVGKIPKEFGKL----NSLTKLILRGNQL-------IGHLPSEIGSLTKLEFLNLSTNRF 254
+ G + L L + L + + L + ++ K+ ++ +
Sbjct: 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296
Query: 255 --------SSLIPESLGNLLKLHYLDLSKY--QFIQELPKELGKLVQLSELELSHNFLG 303
S+LI E G L+ Q Q ++L +L E + L
Sbjct: 297 HPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 9e-07
Identities = 38/233 (16%), Positives = 83/233 (35%), Gaps = 35/233 (15%)
Query: 116 KCLRNCP-NLVRISLEGNNMRGTISEAFGIYL-----NLTFLDISDNNFFGE----IASN 165
+ N P ++ ++L GN++ S+ L N+T L++S N + +
Sbjct: 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103
Query: 166 WGKCP-KLSTLNVSMNNITRSIPLEIGNL-----STLNEFDLSLNHI----VGKIPKEFG 215
P ++ L++ N+ + E +++ +L N + ++ +
Sbjct: 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163
Query: 216 KLN-SLTKLILRGNQL----IGHLPSEIGSL-TKLEFLNLSTNRFSSLIPESLGNLLK-- 267
+ ++ L LRGN L L + S+ + L+LS N L +
Sbjct: 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223
Query: 268 ---LHYLDLSKYQF----IQELPKELGKLVQLSELELSHNFLGREIPSQICSM 313
+ L+L ++ L L L + L ++ + Q ++
Sbjct: 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 42/206 (20%), Positives = 79/206 (38%), Gaps = 30/206 (14%)
Query: 138 ISEAFGIYLNLTFLDISDNNF----FGEIASNWGKCP-KLSTLNVSMNNITRSIPLEIG- 191
+ E I +T LD+S NN E+ + P +++LN+S N++ E+
Sbjct: 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73
Query: 192 ----NLSTLNEFDLSLNHI----VGKIPKEFGKLN-SLTKLILRGNQL----IGHLPSEI 238
+ + +LS N + ++ K + ++T L L N
Sbjct: 74 ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133
Query: 239 GSL-TKLEFLNLSTNRFSSLIPESLGNLLK-----LHYLDLSKYQF----IQELPKELGK 288
+L + LNL N + L +L ++ L+L EL K L
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193
Query: 289 L-VQLSELELSHNFLGREIPSQICSM 313
+ ++ L+LS N LG + +++ +
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELAYI 219
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 38/191 (19%), Positives = 67/191 (35%), Gaps = 55/191 (28%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKF 486
+G G +G V + ++E A+K + D + E+E + + +IV+
Sbjct: 70 LGLGINGKVLQIFNKRTQEKFALK---------MLQDCPKARREVELHWRASQCPHIVRI 120
Query: 487 YGFC----SHARHSILIYEYLKRGSL--------ATNLSNDAAAEEL------------- 521
+ + +++ E L G L + A+E +
Sbjct: 121 VDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI 180
Query: 522 -----DISSKNVLLDLEHKAHVS-----DFGIAKFLKPDSSNWSALVGTYRYVAP----- 566
D+ +N+L K + DFG AK +S + T YVAP
Sbjct: 181 NIAHRDVKPENLL--YTSKRPNAILKLTDFGFAKETTSHNS-LTTPCYTPYYVAPEVLGP 237
Query: 567 -DYRKKCDVYS 576
Y K CD++S
Sbjct: 238 EKYDKSCDMWS 248
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 53/264 (20%), Positives = 95/264 (35%), Gaps = 68/264 (25%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G G +VY AE +A+K P + ++ F E+ +++ H+NIV
Sbjct: 19 LGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKR-FEREVHNSSQLSHQNIVSMI 77
Query: 488 GFCSHARHSILIYEYLKRGSLAT------NLSNDAAAEEL------------------DI 523
L+ EY++ +L+ LS D A DI
Sbjct: 78 DVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDI 137
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDS-SNWSALVGTYRYVAP--------DYRKKCDV 574
+N+L+D + DFGIAK L S + + ++GT +Y +P D D+
Sbjct: 138 KPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECT--DI 195
Query: 575 YSFRVLALEVIKGKHPRGF------------VSSILPSPSVINMRLDEMLDPRLPPPSPD 622
YS ++ E++ G+ P F + +P+ + + +P
Sbjct: 196 YSIGIVLYEMLVGEPP--FNGETAVSIAIKHIQDSVPNVT-------TDVRKDIPQ---- 242
Query: 623 VQGKLISIMEVAFSCLDVSPESRP 646
S+ V + +R
Sbjct: 243 ------SLSNVILRATEKDKANRY 260
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 53/265 (20%), Positives = 96/265 (36%), Gaps = 62/265 (23%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFN-SPLPSDQIADQKEF---FAEIEALTKIRHRNI 483
+GSG G V+ A + + VK + D + + EI L+++ H NI
Sbjct: 32 LGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANI 91
Query: 484 VKFYGFCSHARHSILIYEYLKRG-------SLATNLSND----------AAAEEL----- 521
+K + L+ E G L +A L
Sbjct: 92 IKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKDI 151
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YR-KK 571
DI +N+++ + + DFG A +L+ + GT Y AP+ YR +
Sbjct: 152 IHRDIKDENIVIAEDFTIKLIDFGSAAYLERGK-LFYTFCGTIEYCAPEVLMGNPYRGPE 210
Query: 572 CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP---SPDVQGKLI 628
+++S V ++ ++P F L+E ++ + PP S ++ L+
Sbjct: 211 LEMWSLGVTLYTLVFEENP--FCE------------LEETVEAAIHPPYLVSKELM-SLV 255
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQ 653
S + L PE R T++ +
Sbjct: 256 SGL------LQPVPERRTTLEKLVT 274
|
| >2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 6e-09
Identities = 50/215 (23%), Positives = 78/215 (36%), Gaps = 49/215 (22%)
Query: 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKE---FFAEIEAL 475
+DF+ IG G V ++ + + A+K + + + E F E + L
Sbjct: 60 RDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKI----MNKWDMLKRGEVSCFREERDVL 115
Query: 476 TKIRHRNIVK-FYGFCSHARHSILIYEYLKRGSLATNLSNDA-----------AAEEL-- 521
R I + + F + L+ EY G L T LS AE +
Sbjct: 116 VNGDRRWITQLHFAFQD-ENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMA 174
Query: 522 ------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA-LVGTYRYVAP-- 566
DI N+LLD ++DFG L+ D + S VGT Y++P
Sbjct: 175 IDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEI 234
Query: 567 -----------DYRKKCDVYSFRVLALEVIKGKHP 590
Y +CD ++ V A E+ G+ P
Sbjct: 235 LQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTP 269
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 7e-09
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 10/114 (8%)
Query: 192 NLSTLNEFDLSLNHI-VGKIPKEFGKLNSLTKLILRGNQL--IGHLPSEIGSLTKLEFLN 248
S + E L + GK+ + L L L I +LP L KL+ L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK----LNKLKKLE 70
Query: 249 LSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELP--KELGKLVQLSELELSHN 300
LS NR S + L +L+LS I++L + L KL L L+L +
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-08
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 4/112 (3%)
Query: 119 RNCPNLVRISLEGN-NMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177
R ++ + L+ + + G + + L FL + +N K KL L +
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSIANLPKLNKLKKLEL 71
Query: 178 SMNNITRSIPLEIGNLSTLNEFDLSLNHIVG-KIPKEFGKLNSLTKLILRGN 228
S N ++ + + L +LS N I + KL +L L L
Sbjct: 72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 9e-07
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 216 KLNSLTKLILRGNQL-IGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
+ + +L+L ++ G L +LEFL+ +S+ +L L KL L+LS
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72
Query: 275 KYQFIQELPKELGKLVQLSELELSHNFL 302
+ L K L+ L LS N +
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKI 100
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 31/116 (26%), Positives = 40/116 (34%), Gaps = 27/116 (23%)
Query: 160 GEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNS 219
G++ + +L L+ +T I NL KLN
Sbjct: 32 GKLEGLTDEFEELEFLSTINVGLTS-----IANLP---------------------KLNK 65
Query: 220 LTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL-IPESLGNLLKLHYLDLS 274
L KL L N++ G L L LNLS N+ L E L L L LDL
Sbjct: 66 LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 1 NLTNLRELHLRDNYLTGL--IPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFL 58
L L + LT + +P L L KL L N+ G L +L +L L
Sbjct: 40 EFEELEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95
Query: 59 FENNLS--GSIPPSVGNLMLTVLALENN 84
N + +I P L L L N
Sbjct: 96 SGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 7e-09
Identities = 33/142 (23%), Positives = 46/142 (32%), Gaps = 22/142 (15%)
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIAS--NWGKCPKLSTL 175
N + L G + I +D SDN EI + +L TL
Sbjct: 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTL 69
Query: 176 NVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVG-KIPKEFGKLNSLTKLILRGN------ 228
V+ N I R L L E L+ N +V L SLT L + N
Sbjct: 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129
Query: 229 ----QLIGHLPSEIGSLTKLEF 246
+I +P + L+F
Sbjct: 130 HYRLYVIYKVP----QVRVLDF 147
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-08
Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 12/130 (9%)
Query: 175 LNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL--IG 232
+ ++ I ++ N E DL I I L+ + N++ +
Sbjct: 2 VKLTAELIEQAAQYT--NAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKLD 58
Query: 233 HLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELP--KELGKLV 290
P L +L+ L ++ NR + L L L L+ + EL L L
Sbjct: 59 GFPL----LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN-NSLVELGDLDPLASLK 113
Query: 291 QLSELELSHN 300
L+ L + N
Sbjct: 114 SLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 6e-08
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 4/113 (3%)
Query: 163 ASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTK 222
A+ + + L++ I L L + D S N I K+ F L L
Sbjct: 12 AAQYTNAVRDRELDLRGYKIPVIENLGA-TLDQFDAIDFSDNEIR-KLDG-FPLLRRLKT 68
Query: 223 LILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL-IPESLGNLLKLHYLDLS 274
L++ N++ +L L L L+ N L + L +L L YL +
Sbjct: 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Query: 200 DLSLNHIVGKIPKEFGKLNSLTKLILRGNQL--IGHLPSEIGSLTKLEFLNLSTNRFSSL 257
L+ I + ++ +L LRG ++ I +L + +L + + ++ S N L
Sbjct: 3 KLTAELI-EQAA-QYTNAVRDRELDLRGYKIPVIENLGA---TLDQFDAIDFSDNEIRKL 57
Query: 258 IPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFL 302
+ L +L L ++ + + L L+EL L++N L
Sbjct: 58 --DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 25/137 (18%), Positives = 42/137 (30%), Gaps = 35/137 (25%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSS---LRYLF 57
N REL LR + +I L + N+ R + L+ L
Sbjct: 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-----KLDGFPLLRRLKTLL 70
Query: 58 LFENNLSGSIPPSVGNLM--LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIP 115
+ N + I + + LT L L NN ++ G L+
Sbjct: 71 VNNNRIC-RIGEGLDQALPDLTELILTNN--------SLVELGDLD-------------- 107
Query: 116 KCLRNCPNLVRISLEGN 132
L + +L + + N
Sbjct: 108 -PLASLKSLTYLCILRN 123
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 9e-09
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 192 NLSTLNEFDLSLNHI-VGKIPKEFGKLNSLTKLILRGNQL--IGHLPSEIGSLTKLEFLN 248
+ + E L GKI + +L L L L + +LP L KL+ L
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK----LPKLKKLE 77
Query: 249 LSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELP--KELGKLVQLSELELSHN 300
LS NR + L L +L+LS + ++++ + L KL L L+L +
Sbjct: 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 32/126 (25%), Positives = 43/126 (34%), Gaps = 28/126 (22%)
Query: 150 FLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGK 209
LD +N G+I + L L++ + + NL
Sbjct: 30 VLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLIS-----VSNLP--------------- 68
Query: 210 IPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL-IPESLGNLLKL 268
KL L KL L N++ G L L L LNLS N+ + E L L L
Sbjct: 69 ------KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL 122
Query: 269 HYLDLS 274
LDL
Sbjct: 123 KSLDLF 128
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 217 LNSLTKLILRGNQL-IGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSK 275
++ +L+L + G + LEFL+L S+ +L L KL L+LS+
Sbjct: 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSE 80
Query: 276 YQFIQELPKELGKLVQLSELELSHNFL 302
+ L KL L+ L LS N L
Sbjct: 81 NRIFGGLDMLAEKLPNLTHLNLSGNKL 107
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
NL L L + L + L L KL L N+ G L L +L +L L
Sbjct: 47 EFVNLEFLSLINVGLISVSNLP--KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104
Query: 61 NNLS--GSIPPSVGNLMLTVLALENN 84
N L ++ P L L L N
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 221 TKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQ 280
T+L L GNQ +P E+ + L ++LS NR S+L +S N+ +L L LS + ++
Sbjct: 34 TELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LR 91
Query: 281 ELPKEL-GKLVQLSELELSHNFLGREIP 307
+P L L L L N + +P
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDI-SVVP 118
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFEN 61
++ EL+L N T L+P E N K L + L N+ +L + N++ L L L N
Sbjct: 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYN 88
Query: 62 NLSGSIPPSV--GNLMLTVLALENN 84
L IPP G L +L+L N
Sbjct: 89 RLR-CIPPRTFDGLKSLRLLSLHGN 112
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
N +L + L +N ++ L N+ L+ L L N+ R +P L SLR L L
Sbjct: 52 NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLH 110
Query: 60 ENNLSGSIPPSV-GNLM-LTVLALENN 84
N++S +P +L L+ LA+ N
Sbjct: 111 GNDIS-VVPEGAFNDLSALSHLAIGAN 136
|
| >1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 46/207 (22%), Positives = 76/207 (36%), Gaps = 40/207 (19%)
Query: 420 INDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEF---FAEIEAL 475
DF +G G +V A EL + A+K L I + + E + +
Sbjct: 29 PEDFKFGKILGEGSFSTVVLARELATSREYAIKI----LEKRHIIKENKVPYVTRERDVM 84
Query: 476 TKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNL------SNDAA----AEEL---- 521
+++ H VK Y Y K G L + AE +
Sbjct: 85 SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALE 144
Query: 522 ----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAP--- 566
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P
Sbjct: 145 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELL 204
Query: 567 ---DYRKKCDVYSFRVLALEVIKGKHP 590
K D+++ + +++ G P
Sbjct: 205 TEKSACKSSDLWALGCIIYQLVAGLPP 231
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 2e-08
Identities = 30/298 (10%), Positives = 60/298 (20%), Gaps = 85/298 (28%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVK--KFNSPLPSDQIADQKEFFAEIEALTKIRH----- 480
+G + A + E V F PS+ I KE + L I++
Sbjct: 86 LGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAK 145
Query: 481 --------------RNIVKFYGFCSHARHSILIYEYL-----------------KRGSLA 509
K R ++ + S
Sbjct: 146 VHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTH 205
Query: 510 TNLSNDAA---AEEL---------------DISSKNVLLDLEHKAHVSDFGIAKFL-KPD 550
+L + A ++ + +++LD ++ F
Sbjct: 206 KSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGASA 265
Query: 551 SSNWSALVGTYRYVAP-----------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILP 599
S A D ++ + + P
Sbjct: 266 VSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLP--NTDDAA- 322
Query: 600 SPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657
+ E + V+ L+ L E R + +
Sbjct: 323 ------LGGSEWIFRSCKNIPQPVR-ALLE------GFLRYPKEDRLLPLQAMETPEY 367
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 56/270 (20%), Positives = 90/270 (33%), Gaps = 70/270 (25%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFN--SPLPSDQIADQKEFFAEIEALTKIR----HR 481
+G G G+V+ L + +A+K L ++D E+ L K+ H
Sbjct: 39 LGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHP 98
Query: 482 NIVKFYGFCSHARHSILIYEYLKRG-------SLATNLSND----------AAAEEL--- 521
+++ + +L+ E + L AA +
Sbjct: 99 GVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSR 158
Query: 522 -----DISSKNVLLDLEH---KAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------D 567
DI +N+L+DL K + DFG L ++ GT Y P
Sbjct: 159 GVVHRDIKDENILIDLRRGCAK--LIDFGSGALLH--DEPYTDFDGTRVYSPPEWISRHQ 214
Query: 568 YR-KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP---SPDV 623
Y V+S +L +++ G P F E+L+ L P SPD
Sbjct: 215 YHALPATVWSLGILLYDMVCGDIP--FERD------------QEILEAELHFPAHVSPDC 260
Query: 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
LI CL P SRP+++ I
Sbjct: 261 C-ALIR------RCLAPKPSSRPSLEEILL 283
|
| >3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 65/274 (23%), Positives = 88/274 (32%), Gaps = 76/274 (27%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFN-SPLPSDQIADQKEFFAEIEALTKIRHRNIVKF 486
IGSG G +KE +AVK + + EI +RH NIV+F
Sbjct: 28 IGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQ------REIINHRSLRHPNIVRF 81
Query: 487 YGFCSHARHSILIYEYLKRGSL------ATNLSNDAAAE---EL---------------D 522
H +I EY G L A S D A +L D
Sbjct: 82 KEVILTPTHLAIIMEYASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSMQICHRD 141
Query: 523 ISSKNVLLDLEHKAH--VSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKCDVYSFRVL 580
+ +N LLD + DFG +K S S VGT Y+AP
Sbjct: 142 LKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKST-VGTPAYIAP-------------- 186
Query: 581 ALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP---PPSPDVQGKLIS-IMEVAFS 636
EV+ + G ++ + S V L ML P P P K I I+ V +S
Sbjct: 187 --EVLLRQEYDGKIADVW-SCGVT---LYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYS 240
Query: 637 C-----------------LDVSPESRPTMQTITQ 653
P +R ++ I
Sbjct: 241 IPDDIRISPECCHLISRIFVADPATRISIPEIKT 274
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 5e-08
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 409 GKFDYVEIIRAINDFDAKYCI----GSGRHGSVYRA-ELPSKEFLAVKKFN-SPLPSDQI 462
G+ + ++ + KY + G G +G V A E ++ A+K N + +
Sbjct: 10 GRENLYFQGGSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINP 69
Query: 463 ADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL 508
D + E+ + K+ H NI + Y ++ L+ E G L
Sbjct: 70 KDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHL 115
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 14/64 (21%)
Query: 527 NVLLDLEHKAHV--SDFGIAKFLKP----DSSNWSALVGTYRYVAP--------DYRKKC 572
N L + DFG++K + + GT +VAP Y KC
Sbjct: 198 NFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKC 257
Query: 573 DVYS 576
D +S
Sbjct: 258 DAWS 261
|
| >2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 9e-08
Identities = 58/274 (21%), Positives = 88/274 (32%), Gaps = 76/274 (27%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKE-FFAEIEALTKIRHRNIVKF 486
+G G +G V A ++E +AVK + + D E EI + H N+VKF
Sbjct: 15 LGEGAYGEVQLAVNRVTEEAVAVKIVDM----KRAVDCPENIKKEICINKMLNHENVVKF 70
Query: 487 YGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------D 522
YG L EY G L + D E D
Sbjct: 71 YGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRD 130
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW--SALVGTYRYVAPDYRKKCDVYSFRVL 580
I +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 131 IKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP-------------- 176
Query: 581 ALEVIKGKHPRGFVSSI--------------LP----SPSVINMRLDEMLDPRLPPP--- 619
E++K + + LP S S + L P
Sbjct: 177 --ELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKI 234
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
L+ + L +P +R T+ I +
Sbjct: 235 DSAPL-ALLHKI------LVENPSARITIPDIKK 261
|
| >3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 9e-08
Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 44/210 (20%)
Query: 420 INDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKE---FFAEIEAL 475
D++ IG G G V +++ A+K L ++ + + F+ E + +
Sbjct: 68 AEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKL----LSKFEMIKRSDSAFFWEERDIM 123
Query: 476 TKIRHRNIVK-FYGFCSHARHSILIYEYLKRGSLATNLSNDA---------AAEEL---- 521
+V+ FY F R+ ++ EY+ G L +SN AE +
Sbjct: 124 AFANSPWVVQLFYAFQD-DRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALD 182
Query: 522 ----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS-ALVGTYRYVAP---- 566
D+ N+LLD ++DFG + + VGT Y++P
Sbjct: 183 AIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLK 242
Query: 567 ------DYRKKCDVYSFRVLALEVIKGKHP 590
Y ++CD +S V E++ G P
Sbjct: 243 SQGGDGYYGRECDWWSVGVFLYEMLVGDTP 272
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 1e-07
Identities = 29/299 (9%), Positives = 63/299 (21%), Gaps = 94/299 (31%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVK--KFNSPLPSDQIADQKEFFAEIEALTKIRH----- 480
+G + A + + E V F PS+ I KE + L I++
Sbjct: 81 LGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAK 140
Query: 481 --------------RNIVKFYGFCSHARHSILIYEYL-----------------KRGSLA 509
K R ++ + S
Sbjct: 141 VHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTH 200
Query: 510 TNLSNDAA---AEEL---------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
+L + A ++ + +++LD ++ F
Sbjct: 201 KSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARV 260
Query: 552 SNWSALVGTYRYVAPD-----------------YRKKCDVYSFRVLALEVIKGKHPRGFV 594
+ + P+ D ++ ++ + P
Sbjct: 261 V----SSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLP--IT 314
Query: 595 SSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
+ E + V+ L+ L E R +
Sbjct: 315 KDAA-------LGGSEWIFRSCKNIPQPVR-ALLE------GFLRYPKEDRLLPLQAME 359
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 57/288 (19%), Positives = 96/288 (33%), Gaps = 79/288 (27%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFN------------SPLPSDQIADQKEFFA----- 470
IG G +G V A + A+K + P P
Sbjct: 21 IGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPI 80
Query: 471 -----EIEALTKIRHRNIVKFYGFCSHA--RHSILIYEYLKRGSLATNLSNDAAAEEL-- 521
EI L K+ H N+VK H +++E + +G + + +E+
Sbjct: 81 EQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQAR 140
Query: 522 ---------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT 560
DI N+L+ + ++DFG++ K + S VGT
Sbjct: 141 FYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGT 200
Query: 561 YRYVAP--------DYR-KKCDVYSFRVLALEVIKGKHPRGFVSSILP--SPSVINM--- 606
++AP + K DV++ V L FV P ++ +
Sbjct: 201 PAFMAPESLSETRKIFSGKALDVWAMGVT-LYC--------FVFGQCPFMDERIMCLHSK 251
Query: 607 -RLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
+ + P P + D++ LI+ M LD +PESR + I
Sbjct: 252 IKSQALEFPDQPDIAEDLK-DLITRM------LDKNPESRIVVPEIKL 292
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
L +L +L L+ N LTG+ P + +L LG N+ + + + + L L+ L L+
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLY 110
Query: 60 ENNLSGSIPPSV-GNLM-LTVLALENNHF 86
+N +S + P +L LT L L +N F
Sbjct: 111 DNQIS-CVMPGSFEHLNSLTSLNLASNPF 138
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 9e-07
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 175 LNVSMNNITRSIPLEI-GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGH 233
L ++ N + R + G L L + +L N + G P F + + +L L N++
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-KE 92
Query: 234 LPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDL 273
+ +++ L +L+ LNL N+ S ++P S +L L L+L
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 221 TKLILRGNQLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFI 279
T+L+L N+L + G L L L L N+ + + P + + L L + + I
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-I 90
Query: 280 QELPKEL-GKLVQLSELELSHN 300
+E+ ++ L QL L L N
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDN 112
|
| >3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 56/274 (20%), Positives = 85/274 (31%), Gaps = 76/274 (27%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKE-FFAEIEALTKIRHRNIVKF 486
+G G +G V A ++E +AVK + + D E EI + H N+VKF
Sbjct: 15 LGEGAYGEVQLAVNRVTEEAVAVKI----VDMKRAVDCPENIKKEICINKMLNHENVVKF 70
Query: 487 YGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------D 522
YG L EY G L + D E D
Sbjct: 71 YGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRD 130
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW--SALVGTYRYVAPDYRKKCDVYSFRVL 580
I +N+LLD +SDFG+A + ++ + + GT YVAP
Sbjct: 131 IKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAP-------------- 176
Query: 581 ALEVIKGKHPRGFVSSI--------------LP---SPSVINMRLDEMLDPRLPPP---- 619
E++K + + LP D P
Sbjct: 177 --ELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKI 234
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
L+ + L +P +R T+ I +
Sbjct: 235 DSAPL-ALLHKI------LVENPSARITIPDIKK 261
|
| >4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 51/213 (23%), Positives = 79/213 (37%), Gaps = 47/213 (22%)
Query: 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKE---FFAEIEAL 475
DF+ IG G G V +L + + A+K L ++ + E F E + L
Sbjct: 73 REDFEILKVIGRGAFGEVAVVKLKNADKVFAMKI----LNKWEMLKRAETACFREERDVL 128
Query: 476 TKIRHRNIVK-FYGFCSHARHSILIYEYLKRGSLATNLSNDA-----------AAEEL-- 521
+ I Y F + L+ +Y G L T LS AE +
Sbjct: 129 VNGDSKWITTLHYAFQD-DNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIA 187
Query: 522 ------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA-LVGTYRYVAP-- 566
DI N+L+D+ ++DFG L D + S+ VGT Y++P
Sbjct: 188 IDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEI 247
Query: 567 ---------DYRKKCDVYSFRVLALEVIKGKHP 590
Y +CD +S V E++ G+ P
Sbjct: 248 LQAMEGGKGRYGPECDWWSLGVCMYEMLYGETP 280
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 52.3 bits (124), Expect = 3e-07
Identities = 28/228 (12%), Positives = 67/228 (29%), Gaps = 40/228 (17%)
Query: 106 GGNHFRGPIPKCLRNCPNLVRISLEGNNMR---------GTISEAFGIYLNLTFLDISDN 156
+ I + + + + +S L L I
Sbjct: 123 DCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182
Query: 157 NFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIG--NLSTLNEFDLSLNHIVGKIPKEF 214
N P L +L + + S+ +I +L L + L + +++
Sbjct: 183 NNLSIGKK---PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGV------EDY 233
Query: 215 GKLNSLTKL--ILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGN---LLKLH 269
G + + + L++L + +++ E L +L
Sbjct: 234 GFDGDMNVFRPLFSKD-----------RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282
Query: 270 YLDLSKYQF----IQELPKELGKLVQLSELELSHNFLGREIPSQICSM 313
+D+S + L + K+ L + + +N+L E+ ++
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 7e-06
Identities = 32/210 (15%), Positives = 64/210 (30%), Gaps = 26/210 (12%)
Query: 109 HFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN--W 166
+ + L P L + ++G N +S NL L+I + +
Sbjct: 159 IEQVDLSPVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILG 215
Query: 167 GKCPKLSTLNVSMNNITRSIP---------LEIGNLSTLNEFDLSLNHIVGKIPKEFGK- 216
P L L + + L + + + F +
Sbjct: 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES 275
Query: 217 --LNSLTKLILRGNQL----IGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHY 270
L L + + L L + + L+F+N+ N S + + L L +
Sbjct: 276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMK- 334
Query: 271 LDLSKYQFIQELPKELGKLVQLSELELSHN 300
+D+S + + ++ELE H+
Sbjct: 335 IDVS----DSQEYDDDYSYPMITELEHHHH 360
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 55/268 (20%), Positives = 93/268 (34%), Gaps = 68/268 (25%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFN--SPLPSDQIADQKEFFAEIEALTKIRHR--NI 483
+GSG GSVY + +A+K ++ + E+ L K+ +
Sbjct: 51 LGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGV 110
Query: 484 VKFYGFCSHARHSILIYEY-----------LKRGSLATNLSND------AAAEEL----- 521
++ + +LI E +RG+L L+ A
Sbjct: 111 IRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGV 170
Query: 522 ---DISSKNVLLDLEH---KAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DYR 569
DI +N+L+DL K + DFG LK + ++ GT Y P Y
Sbjct: 171 LHRDIKDENILIDLNRGELK--LIDFGSGALLK--DTVYTDFDGTRVYSPPEWIRYHRYH 226
Query: 570 -KKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP---SPDVQG 625
+ V+S +L +++ G P F +E++ ++ S + Q
Sbjct: 227 GRSAAVWSLGILLYDMVCGDIP--FEHD------------EEIIRGQVFFRQRVSSECQ- 271
Query: 626 KLISIMEVAFSCLDVSPESRPTMQTITQ 653
LI CL + P RPT + I
Sbjct: 272 HLIR------WCLALRPSDRPTFEEIQN 293
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 47/209 (22%), Positives = 81/209 (38%), Gaps = 44/209 (21%)
Query: 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEF---FAEIEAL 475
+ F+ IG G G V + +K+ A+K N + ++ E F E++ +
Sbjct: 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNK----QKCVERNEVRNVFKELQIM 69
Query: 476 TKIRHRNIVK-FYGFCSHARHSILIYEYLKRGSLATNL------SNDAA---AEEL---- 521
+ H +V +Y F ++ + L G L +L + EL
Sbjct: 70 QGLEHPFLVNLWYSFQDEED-MFMVVDLLLGGDLRYHLQQNVHFKEETVKLFICELVMAL 128
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP---- 566
D+ N+LLD H++DF IA L ++ + + GT Y+AP
Sbjct: 129 DYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITT-MAGTKPYMAPEMFS 187
Query: 567 -----DYRKKCDVYSFRVLALEVIKGKHP 590
Y D +S V A E+++G+ P
Sbjct: 188 SRKGAGYSFAVDWWSLGVTAYELLRGRRP 216
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 429 IGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHR 481
+G G G V A+ + +AVK + + +E++ L I H
Sbjct: 30 LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS---EHRALMSELKILIHIGHHL 86
Query: 482 NIVKFYGFCSHARHSI-LIYEYLKRGSLATNLSN 514
N+V G C+ + +I E+ K G+L+T L +
Sbjct: 87 NVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRS 120
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 27/147 (18%)
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGT--YRYVAPD------YRKKCD 573
D++++N+LL ++ + DFG+A+ + D +++AP+ Y + D
Sbjct: 218 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSD 277
Query: 574 VYSFRVLALEVIKGKHPRGFVSSILPSPSV-INMRLDEMLDP--RLPPP--SPDVQGKLI 628
V+SF VL E+ F P P V I+ L R+ P + ++
Sbjct: 278 VWSFGVLLWEI--------FSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTP---EMY 326
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQL 655
M C P RPT + + L
Sbjct: 327 QTML---DCWHGEPSQRPTFSELVEHL 350
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 47/210 (22%), Positives = 76/210 (36%), Gaps = 47/210 (22%)
Query: 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEF---FAEIEAL 475
N F +G G G V ++ + + A KK L +I +K E + L
Sbjct: 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKK----LEKKRIKKRKGEAMALNEKQIL 238
Query: 476 TKIRHRNIVK-FYGFCSHARHSILIYEYLKRGSLATNLSNDA------------AAEEL- 521
K+ R +V Y + + L+ + G L ++ + AAE
Sbjct: 239 EKVNSRFVVSLAYAYETKD-ALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICC 297
Query: 522 -------------DISSKNVLLDLEHKAHV--SDFGIAKFLKPDSSNWSALVGTYRYVAP 566
D+ +N+LLD H+ SD G+A + + VGT Y+AP
Sbjct: 298 GLEDLHRERIVYRDLKPENILLDDH--GHIRISDLGLAVHVPEGQTI-KGRVGTVGYMAP 354
Query: 567 ------DYRKKCDVYSFRVLALEVIKGKHP 590
Y D ++ L E+I G+ P
Sbjct: 355 EVVKNERYTFSPDWWALGCLLYEMIAGQSP 384
|
| >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 44/210 (20%), Positives = 78/210 (37%), Gaps = 44/210 (20%)
Query: 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEF---FAEIEAL 475
+ F +G G G V+ ++ + + A KK L ++ +K + E + L
Sbjct: 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKK----LNKKRLKKRKGYQGAMVEKKIL 239
Query: 476 TKIRHRNIVK-FYGFCSHARHSILIYEYLKRGSLATNLSNDA--------------AAEE 520
K+ R IV Y F + L+ + G + ++ N A+
Sbjct: 240 AKVHSRFIVSLAYAFETKT-DLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQI 298
Query: 521 L--------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
+ D+ +NVLLD + +SD G+A LK + GT ++AP
Sbjct: 299 VSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAP 358
Query: 567 ------DYRKKCDVYSFRVLALEVIKGKHP 590
+Y D ++ V E+I + P
Sbjct: 359 ELLLGEEYDFSVDYFALGVTLYEMIAARGP 388
|
| >2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 67/295 (22%), Positives = 95/295 (32%), Gaps = 94/295 (31%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVK-----KFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
+G G G V E + +AVK K S +I EI+ L RH +
Sbjct: 19 LGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKI------KREIQNLKLFRHPH 72
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------------------- 521
I+K Y S ++ EY+ G L + EE+
Sbjct: 73 IIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMV 132
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV----GTYRYVAPDYRKKCDV 574
D+ +NVLLD A ++DFG++ + + G+ Y AP
Sbjct: 133 VHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE-----FLRTSCGSPNYAAP-------- 179
Query: 575 YSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP----------------- 617
EVI G+ G I S VI L +L LP
Sbjct: 180 --------EVISGRLYAGPEVDIW-SCGVI---LYALLCGTLPFDDEHVPTLFKKIRGGV 227
Query: 618 ---PP--SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
P + V L+ M L V P R T++ I + F SY P
Sbjct: 228 FYIPEYLNRSVA-TLLMHM------LQVDPLKRATIKDIREHEWFKQDLPSYLFP 275
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 32/94 (34%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 185 SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLTK 243
S+P I S+ +L N + F KL LTKL L NQ+ LP + LTK
Sbjct: 21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTK 77
Query: 244 LEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQ 277
L L L N+ SL L +L L L Q
Sbjct: 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ 111
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 221 TKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQ 280
T+L L N+L LT+L L+LS N+ SL L KL L L + + Q
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-Q 89
Query: 281 ELPKEL-GKLVQLSELELSHNFLGREIP 307
LP + KL QL EL L N L + +P
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQL-KSVP 116
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 4e-06
Identities = 32/85 (37%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFEN 61
++ L L N L L L L KL L NQ + SLP V L+ L L+L EN
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHEN 86
Query: 62 NLSGSIPPSV-GNL-MLTVLALENN 84
L S+P V L L LAL+ N
Sbjct: 87 KLQ-SLPNGVFDKLTQLKELALDTN 110
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFE 60
LT L +L L N + L L L L L N+ + SLP+ V L+ L+ L L
Sbjct: 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDT 109
Query: 61 NNLSGSIPPSVGNLM--LTVLALENN 84
N L S+P + + + L + L N
Sbjct: 110 NQLK-SVPDGIFDRLTSLQKIWLHTN 134
|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 47/207 (22%), Positives = 79/207 (38%), Gaps = 41/207 (19%)
Query: 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEF---FAEIEAL 475
+N+F+ +G G G V + + + A+K L + I + E E L
Sbjct: 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKI----LKKEVIVAKDEVAHTLTENRVL 202
Query: 476 TKIRHRNIVK-FYGFCSHARHSILIYEYLKRGSLATNLSNDA----------AAEEL--- 521
RH + Y F +H + EY G L +LS + AE +
Sbjct: 203 QNSRHPFLTALKYSFQTHD-RLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSAL 261
Query: 522 ------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP--- 566
D+ +N++LD + ++DFG+ K D + GT Y+AP
Sbjct: 262 DYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVL 321
Query: 567 ---DYRKKCDVYSFRVLALEVIKGKHP 590
DY + D + V+ E++ G+ P
Sbjct: 322 EDNDYGRAVDWWGLGVVMYEMMCGRLP 348
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 4e-06
Identities = 53/318 (16%), Positives = 94/318 (29%), Gaps = 32/318 (10%)
Query: 1 NLTNLRELHLRDNYLTGL--IPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFL 58
N +L + + D + L NL+ L + ++ L L L
Sbjct: 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL 277
Query: 59 FENNLSGSIPPSVGNLMLTVLALEN-NHFTGNLRHNICRNGALERVIVGGNHFRGPIPKC 117
+ + L L T + I + LE + +
Sbjct: 278 SYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL 337
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177
+ C L R+ +E + + G+ +S +A C +L + V
Sbjct: 338 AQYCKQLKRLRIERGADEQGMEDEEGL--------VSQRGLI-ALAQG---CQELEYMAV 385
Query: 178 SMNNIT----RSIPLEIGNLSTLNEFDLS---------LNHIVGKIPKEFGKLNSLTKLI 224
+++IT SI + NL L L++ V + KL
Sbjct: 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA-FY 444
Query: 225 LRGNQLIGHLPSEIGSL-TKLEFLNLSTNRFSSL-IPESLGNLLKLHYLDLSKYQFIQE- 281
LR L S IG + ++ L S + E L L++ F +
Sbjct: 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504
Query: 282 LPKELGKLVQLSELELSH 299
+ + KL L L +
Sbjct: 505 IAAAVTKLPSLRYLWVQG 522
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 52/345 (15%), Positives = 95/345 (27%), Gaps = 53/345 (15%)
Query: 1 NLTNLRELHLRDNYLT--GLIPTETWNLKSLVKLGLGG-NQFRGSLPSSVG-NLSSLRYL 56
NL L+ +H R ++ L L L L + F S+ + ++ L
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169
Query: 57 FLFENNLSGSIPPSVGNL-----MLTVLALENNHFTG----NLRHNICRNGALERVIVGG 107
+ E++ S + L L VL F +L +L V VG
Sbjct: 170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229
Query: 108 NHFRGP--IPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN 165
K N SL + L L +S +
Sbjct: 230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPIL 288
Query: 166 WGKCPKLSTLNVSM-NNITRSIPLEIGNLSTLNEFDL-------SLNHIVGKIPKEFGKL 217
+ ++ L++ T I L + L + +
Sbjct: 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ----- 343
Query: 218 NSLTKLILRGNQLIGHLPSEIGSLT------------KLEFLNLSTNRFS----SLIPES 261
L +L + + E G ++ +LE++ + + + I
Sbjct: 344 --LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401
Query: 262 LGNLLKLHYLDLSKYQFIQELPKELG------KLVQLSELELSHN 300
L NL + L + + I +LP + G +L
Sbjct: 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446
|
| >3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 6e-06
Identities = 48/210 (22%), Positives = 75/210 (35%), Gaps = 46/210 (21%)
Query: 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEF---FAEIEAL 475
+NDF IG G G VY + + A+K L +I ++ E L
Sbjct: 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKC----LDKKRIKMKQGETLALNERIML 243
Query: 476 TKI---RHRNIVK-FYGFCSHARHSILIYEYLKRGSLATNLSNDA----------AAEEL 521
+ + IV Y F + I + + G L +LS AAE +
Sbjct: 244 SLVSTGDCPFIVCMSYAFHTPD-KLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEII 302
Query: 522 --------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP- 566
D+ N+LLD +SD G+A + A VGT+ Y+AP
Sbjct: 303 LGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH--ASVGTHGYMAPE 360
Query: 567 ------DYRKKCDVYSFRVLALEVIKGKHP 590
Y D +S + ++++G P
Sbjct: 361 VLQKGVAYDSSADWFSLGCMLFKLLRGHSP 390
|
| >2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 8e-06
Identities = 65/293 (22%), Positives = 94/293 (32%), Gaps = 90/293 (30%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVK-----KFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
+G G G V + + +AVK K S +I EI+ L RH +
Sbjct: 24 LGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKI------RREIQNLKLFRHPH 77
Query: 483 IVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------------------- 521
I+K Y S ++ EY+ G L + + +E
Sbjct: 78 IIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMV 137
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDS--SNWSALVGTYRYVAPDYRKKCDVYS 576
D+ +NVLLD A ++DFG++ + G+ Y AP
Sbjct: 138 VHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTS---CGSPNYAAP---------- 184
Query: 577 FRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP------------------- 617
EVI G+ G I S VI L +L LP
Sbjct: 185 ------EVISGRLYAGPEVDIW-SSGVI---LYALLCGTLPFDDDHVPTLFKKICDGIFY 234
Query: 618 -PP--SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
P +P V L+ M L V P R T++ I + F Y P
Sbjct: 235 TPQYLNPSVI-SLLKHM------LQVDPMKRATIKDIREHEWFKQDLPKYLFP 280
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 9e-06
Identities = 39/222 (17%), Positives = 72/222 (32%), Gaps = 36/222 (16%)
Query: 107 GNHFRGPIPKCLRNCPNLVRISLEG----NNMRGTISEAFGIYLNLTFLDISDNNFFGE- 161
G + I + L I L+ ++ I+++F N L +S F
Sbjct: 90 GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFK---NFKVLVLSSCEGFSTD 146
Query: 162 -IASNWGKCPKLSTLNVSMNNITR-------SIPLEIGNLSTLNEF-------DLSLNHI 206
+A+ C L L++ +++ P +L +LN +L +
Sbjct: 147 GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206
Query: 207 VGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLS------TNRFSSLIPE 260
V + P +L L L + L + + +LE L S +
Sbjct: 207 VTRCP-------NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259
Query: 261 SLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFL 302
+L +L L LP +L+ L LS+ +
Sbjct: 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 30/203 (14%), Positives = 65/203 (32%), Gaps = 22/203 (10%)
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYL-----NLTFLDISDNNFFGE----IASNWGK 168
++ N + L S + NL LD+ +++ ++
Sbjct: 126 AKSFKNFKVLVLSSCE---GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182
Query: 169 CPKLSTLNVSM--NNIT-RSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLIL 225
L +LN+S + ++ ++ + L L+ + K+ + L +L
Sbjct: 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242
Query: 226 RGNQLIGH------LPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFI 279
G L + +L L+ + + +P +L L+LS
Sbjct: 243 GGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302
Query: 280 -QELPKELGKLVQLSELELSHNF 301
+L K L + +L L +
Sbjct: 303 SYDLVKLLCQCPKLQRLWVLDYI 325
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 45/317 (14%), Positives = 95/317 (29%), Gaps = 40/317 (12%)
Query: 1 NLTNLRELHLRDNYLT-GLIPTETWNLKSLVKLGLGG-NQF-RGSLPSSVGNLSSLRYLF 57
+ T L E+ L+ +T + + K+ L L F L + +L+ L
Sbjct: 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162
Query: 58 LFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKC 117
L E+++ + + T +L + + + + ALER+
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISC--LASEVSFSALERL-------------- 206
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDIS------DNNFFGEIASNWGKCPK 171
+ CPNL + L ++ L L + + ++ C +
Sbjct: 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266
Query: 172 LSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGK-IPKEFGKLNSLTKLILRGNQL 230
L L+ + + +P S L +LS + + K + L +L +
Sbjct: 267 LRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE 326
Query: 231 IGHLPSEIGSLTKLEFLNLSTNRFSSLIPES----------LGNLLKLHYLDLSKYQF-- 278
L + L L + + + P KL + Q
Sbjct: 327 DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN 386
Query: 279 --IQELPKELGKLVQLS 293
+ + + + +
Sbjct: 387 AALITIARNRPNMTRFR 403
|
| >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 59/290 (20%), Positives = 97/290 (33%), Gaps = 85/290 (29%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVK-----KFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482
+G G G V A +++ +A+K ++ EI L +RH +
Sbjct: 17 LGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRV------EREISYLKLLRHPH 70
Query: 483 IVKFYGFCSHARHSILIYEY---------LKRGSLATNLSND------AAAEEL------ 521
I+K Y + +++ EY +++ + + A E
Sbjct: 71 IIKLYDVITTPTDIVMVIEYAGGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRHKIV 130
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYRKKCDVYSFRV 579
D+ +N+LLD ++DFG++ + + G+ Y AP
Sbjct: 131 HRDLKPENLLLDDNLNVKIADFGLSNIMTDG-NFLKTSCGSPNYAAP------------- 176
Query: 580 LALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP--------------------PP 619
EVI GK G + S ++ L ML RLP P
Sbjct: 177 ---EVINGKLYAGPEVDVW-SCGIV---LYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPD 229
Query: 620 --SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667
SP Q LI M + P R T+Q I + F++ Y P
Sbjct: 230 FLSPGAQ-SLIRRM------IVADPMQRITIQEIRRDPWFNVNLPDYLRP 272
|
| >1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 41/205 (20%)
Query: 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEF---FAEIEAL 475
++ FD +G+G G V + S A+K L ++ K+ E L
Sbjct: 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKI----LDKQKVVKLKQIEHTLNEKRIL 95
Query: 476 TKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNL------SNDAA---AEEL----- 521
+ +VK + ++ EY+ G + ++L S A A ++
Sbjct: 96 QAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFE 155
Query: 522 ----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP----- 566
D+ +N+L+D + V+DFG AK + W+ L GT +AP
Sbjct: 156 YLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAK--RVKGRTWT-LCGTPEALAPEIILS 212
Query: 567 -DYRKKCDVYSFRVLALEVIKGKHP 590
Y K D ++ VL E+ G P
Sbjct: 213 KGYNKAVDWWALGVLIYEMAAGYPP 237
|
| >3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 429 IGSGRHGSVYRA---ELPSKEFLAVKKFNSP-LPSDQIADQKEFFAEIEALTKIRHRNIV 484
+G G +G VY+A + + A+K+ + EI L +++H N++
Sbjct: 29 VGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACR-------EIALLRELKHPNVI 81
Query: 485 KFYG-FCSHARHSI-LIYEYL 503
F SHA + L+++Y
Sbjct: 82 SLQKVFLSHADRKVWLLFDYA 102
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 42/306 (13%), Positives = 91/306 (29%), Gaps = 64/306 (20%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
L++LR+L+L +T + LG + +L + L
Sbjct: 71 LSSLRQLNLAGVRMTP----VKC--TVVAA-VLGSGR------------HALDEVNLASC 111
Query: 62 NLS--GSIPPSVGNLMLTVLALENNHFTGN--------LRHNICRNGALERVIVGGNHFR 111
L G L L L+ N L H+ C+ + + + N
Sbjct: 112 QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQ---ITTLRLSNNPLT 168
Query: 112 GP----IPKCLRNCPNLVRISLEGNNMRGT----ISEAFGIYLNLTFLDISDNNFFGE-- 161
+ + L ++ +SL + ++ L L+++ N
Sbjct: 169 AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228
Query: 162 --IASNWGKCPKLSTLNVSMNNIT-------RSIPLEIGNLSTLNEFDLSLNHIVGKIPK 212
+A + P L L++ N ++ R + + + +
Sbjct: 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV-----S 283
Query: 213 EFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLK----L 268
E+ + + + R + + +L +L +R ++L P LL+ +
Sbjct: 284 EYWSV--ILSEVQRNLNS--WDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEV 339
Query: 269 HYLDLS 274
L
Sbjct: 340 RALLEQ 345
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 185 SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLTK 243
S+P I +T L N I P F +L LT+L L NQL LP+ + LT+
Sbjct: 23 SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQ 79
Query: 244 LEFLNLSTNRFSSLIPE-SLGNLLKLHYLDL 273
L L+L+ N+ S IP + NL L ++ L
Sbjct: 80 LTQLSLNDNQLKS-IPRGAFDNLKSLTHIWL 109
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWN-LKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLF 59
LT L L L +N LT L P ++ L L +L L NQ + S+P NL SL +++L
Sbjct: 53 LTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLL 110
Query: 60 EN 61
N
Sbjct: 111 NN 112
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSV-GNLSSLRYLFLFE 60
L NL++L+ N LT + L L +L L N + S+P NL SL +++L+
Sbjct: 56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYN 114
Query: 61 N 61
N
Sbjct: 115 N 115
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 185 SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI-GSLTK 243
S+P I + L+ N I P F L +L +L N+L +P+ + LT+
Sbjct: 26 SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQ 82
Query: 244 LEFLNLSTNRFSSLIPE-SLGNLLKLHYLDL 273
L L+L+ N S IP + NL L ++ L
Sbjct: 83 LTQLDLNDNHLKS-IPRGAFDNLKSLTHIYL 112
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 54/203 (26%), Positives = 82/203 (40%), Gaps = 53/203 (26%)
Query: 429 IGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK-F 486
IG+G G VY+A+L S E +A+KK + D++ E++ + K+ H NIV+
Sbjct: 62 IGNGSFGVVYQAKLCDSGELVAIKKV--------LQDKRFKNRELQIMRKLDHCNIVRLR 113
Query: 487 YGFCSHARHSI-----LIYEY----LKRGSLATNLSNDAAAEEL---------------- 521
Y F S L+ +Y + R + + +
Sbjct: 114 YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 173
Query: 522 -------DISSKNVLLDLE-HKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------- 566
DI +N+LLD + + DFG AK L N S + Y Y AP
Sbjct: 174 SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRY-YRAPELIFGAT 232
Query: 567 DYRKKCDVYSFR-VLALEVIKGK 588
DY DV+S VLA E++ G+
Sbjct: 233 DYTSSIDVWSAGCVLA-ELLLGQ 254
|
| >2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 47/279 (16%), Positives = 79/279 (28%), Gaps = 82/279 (29%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G G +G V + AVK + EI+ L ++RH+N+++
Sbjct: 13 LGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLV 72
Query: 488 GFCSHA--RHSILIYEYLKRGSL-------ATNLSNDAAAEEL----------------- 521
+ + ++ EY G A
Sbjct: 73 DVLYNEEKQKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVH 132
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV---GTYRYVAPDYRKKCDVYSF 577
DI N+LL +S G+A+ L P +++ G+ + P
Sbjct: 133 KDIKPGNLLLTTGGTLKISALGVAEALHPFAAD-DTCRTSQGSPAFQPP----------- 180
Query: 578 RVLALEVIKGKHP-RGFVSSILPSPSVINMRLDEMLDPRLP------------------- 617
E+ G GF I S V L + P
Sbjct: 181 -----EIANGLDTFSGFKVDIW-SAGVT---LYNITTGLYPFEGDNIYKLFENIGKGSYA 231
Query: 618 -PP--SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
P P + L+ M L+ P R +++ I Q
Sbjct: 232 IPGDCGPPLS-DLLKGM------LEYEPAKRFSIRQIRQ 263
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 667 | |||
| 3omv_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 100.0 | |
| 4gt4_A | 308 | Tyrosine-protein kinase transmembrane receptor RO; | 100.0 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 100.0 | |
| 4b9d_A | 350 | Serine/threonine-protein kinase NEK1; transferase, | 100.0 | |
| 4fih_A | 346 | Serine/threonine-protein kinase PAK 4; kinase doma | 100.0 | |
| 4asz_A | 299 | BDNF/NT-3 growth factors receptor; transferase, TR | 100.0 | |
| 3fpq_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 100.0 | |
| 4fie_A | 423 | Serine/threonine-protein kinase PAK 4; kinase doma | 100.0 | |
| 4aw0_A | 311 | HPDK1, 3-phosphoinositide-dependent protein kinase | 100.0 | |
| 3hyh_A | 275 | Carbon catabolite-derepressing protein kinase; kin | 100.0 | |
| 3ubd_A | 304 | Ribosomal protein S6 kinase alpha-3; kinase-inhibi | 100.0 | |
| 4ase_A | 353 | Vascular endothelial growth factor receptor 2; tra | 100.0 | |
| 3hmm_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 100.0 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4b99_A | 398 | Mitogen-activated protein kinase 7; transferase, i | 100.0 | |
| 3v5w_A | 689 | G-protein coupled receptor kinase 2; inhibitor com | 100.0 | |
| 4f9c_A | 361 | Cell division cycle 7-related protein kinase; Ser/ | 100.0 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 100.0 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 100.0 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 100.0 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 100.0 | |
| 1o6l_A | 337 | RAC-beta serine/threonine protein kinase; protein | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3fe3_A | 328 | MAP/microtubule affinity-regulating kinase 3; seri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 100.0 | |
| 3zgw_A | 347 | Maternal embryonic leucine zipper kinase; transfer | 100.0 | |
| 3soa_A | 444 | Calcium/calmodulin-dependent protein kinase type a | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3niz_A | 311 | Rhodanese family protein; structural genomics, str | 100.0 | |
| 4dc2_A | 396 | Protein kinase C IOTA type; kinase, substrate, cel | 100.0 | |
| 3txo_A | 353 | PKC-L, NPKC-ETA, protein kinase C ETA type; phosph | 100.0 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3a62_A | 327 | Ribosomal protein S6 kinase beta-1; kinase domain, | 100.0 | |
| 2yab_A | 361 | Death-associated protein kinase 2; apoptosis, tran | 100.0 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 100.0 | |
| 2bdw_A | 362 | Hypothetical protein K11E8.1D; kinase, calmodulin | 100.0 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 100.0 | |
| 1tki_A | 321 | Titin; serine kinase, muscle, autoinhibition; 2.00 | 100.0 | |
| 3h4j_B | 336 | AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3a8x_A | 345 | Protein kinase C IOTA type; transferase; HET: TPO; | 100.0 | |
| 2zv2_A | 298 | Calcium/calmodulin-dependent protein kinase kinas; | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3v8s_A | 410 | RHO-associated protein kinase 1; dimerization, myo | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3c0i_A | 351 | Peripheral plasma membrane protein CASK; neurexin, | 100.0 | |
| 3qd2_B | 332 | Eukaryotic translation initiation factor 2-alpha; | 100.0 | |
| 1ob3_A | 288 | PFPK5, cell division control protein 2 homolog; tr | 100.0 | |
| 2y0a_A | 326 | Death-associated protein kinase 1; transferase, ca | 100.0 | |
| 1xjd_A | 345 | Protein kinase C, theta type; PKC-theta, ATP, AMP, | 100.0 | |
| 4fr4_A | 384 | YANK1, serine/threonine-protein kinase 32A; struct | 100.0 | |
| 4aw2_A | 437 | Serine/threonine-protein kinase MRCK alpha; transf | 100.0 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 100.0 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 100.0 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 100.0 | |
| 2pmi_A | 317 | Negative RE, cyclin-dependent protein kinase PHO85 | 100.0 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 100.0 | |
| 1fot_A | 318 | TPK1 delta, CAMP-dependent protein kinase type 1; | 100.0 | |
| 3tki_A | 323 | Serine/threonine-protein kinase CHK1; cell checkpo | 100.0 | |
| 3kn6_A | 325 | Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1 | 100.0 | |
| 3hko_A | 345 | Calcium/calmodulin-dependent protein kinase with d | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 100.0 | |
| 4hcu_A | 269 | Tyrosine-protein kinase ITK/TSK; transferase-trans | 100.0 | |
| 2vd5_A | 412 | DMPK protein; serine/threonine-protein kinase, kin | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3o0g_A | 292 | Cell division protein kinase 5; kinase activator c | 100.0 | |
| 2i0e_A | 353 | Protein kinase C-beta II; serine/threonine protein | 100.0 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 100.0 | |
| 2w4o_A | 349 | Calcium/calmodulin-dependent protein kinase type I | 100.0 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 100.0 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 100.0 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 100.0 | |
| 4eqm_A | 294 | Protein kinase; transferase; HET: ANP; 3.00A {Stap | 100.0 | |
| 1rdq_E | 350 | PKA C-alpha, CAMP-dependent protein kinase, alpha- | 100.0 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 100.0 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4ejn_A | 446 | RAC-alpha serine/threonine-protein kinase; AKT1, a | 100.0 | |
| 3uc3_A | 361 | Serine/threonine-protein kinase SRK2I; SNRK2, ABA | 100.0 | |
| 3c4z_A | 543 | Rhodopsin kinase; Ser/Thr kinase, RGS homology dom | 100.0 | |
| 4agu_A | 311 | Cyclin-dependent kinase-like 1; transferase, phosp | 100.0 | |
| 2y7j_A | 365 | Phosphorylase B kinase gamma catalytic chain, test | 100.0 | |
| 2r5t_A | 373 | Serine/threonine-protein kinase SGK1; AGC protein | 100.0 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 100.0 | |
| 2acx_A | 576 | G protein-coupled receptor kinase 6; GRK, G transf | 100.0 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 100.0 | |
| 2qr7_A | 342 | Ribosomal protein S6 kinase alpha-3; kinase domain | 100.0 | |
| 1u5q_A | 348 | Serine/threonine protein kinase TAO2; transferase; | 100.0 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 2y94_A | 476 | 5'-AMP-activated protein kinase catalytic subunit; | 100.0 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 100.0 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 100.0 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 100.0 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 100.0 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 100.0 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 100.0 | |
| 1vzo_A | 355 | Ribosomal protein S6 kinase alpha 5; protein kinas | 100.0 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 100.0 | |
| 3cok_A | 278 | Serine/threonine-protein kinase PLK4; POLO-like ki | 100.0 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3gni_B | 389 | Strad alpha; kinase fold, pseudokinase, alpha heli | 100.0 | |
| 2eue_A | 275 | Carbon catabolite derepressing protein kinase; kin | 100.0 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 100.0 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 100.0 | |
| 1nxk_A | 400 | MAP kinase-activated protein kinase 2; MK2, phosph | 100.0 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 100.0 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 100.0 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 100.0 | |
| 3gbz_A | 329 | Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide- | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3kk8_A | 284 | Calcium/calmodulin dependent protein kinase II; AT | 100.0 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 100.0 | |
| 2a2a_A | 321 | Death-associated protein kinase 2; autoinhibition, | 100.0 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 100.0 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 100.0 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 100.0 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 100.0 | |
| 3nyv_A | 484 | Calmodulin-domain protein kinase 1; serine/threoni | 100.0 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 100.0 | |
| 3mtl_A | 324 | Cell division protein kinase 16; pctaire1, indirub | 100.0 | |
| 3lij_A | 494 | Calcium/calmodulin dependent protein kinase with A | 100.0 | |
| 3ork_A | 311 | Serine/threonine protein kinase; structural genomi | 100.0 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 100.0 | |
| 3fdn_A | 279 | Serine/threonine-protein kinase 6; aurora kinase i | 100.0 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 100.0 | |
| 1ua2_A | 346 | CAK, cell division protein kinase 7; cell cycle, p | 100.0 | |
| 3oz6_A | 388 | Mitogen-activated protein kinase 1, serine/threon | 100.0 | |
| 3is5_A | 285 | Calcium-dependent protein kinase; CDPK, structural | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 100.0 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2ac3_A | 316 | MAP kinase-interacting serine/threonine kinase 2; | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3rp9_A | 458 | Mitogen-activated protein kinase; structural genom | 100.0 | |
| 2rku_A | 294 | Serine/threonine-protein kinase PLK1; structure of | 100.0 | |
| 4aaa_A | 331 | Cyclin-dependent kinase-like 2; transferase, phosp | 100.0 | |
| 3q5i_A | 504 | Protein kinase; CDPK, malaria, phosphotransferase, | 100.0 | |
| 3dls_A | 335 | PAS domain-containing serine/threonine-protein KI; | 100.0 | |
| 3mwu_A | 486 | Calmodulin-domain protein kinase 1; serine/threoni | 100.0 | |
| 3bhy_A | 283 | Death-associated protein kinase 3; death associate | 100.0 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 100.0 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 100.0 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 100.0 | |
| 2owb_A | 335 | Serine/threonine-protein kinase PLK1; catalytic do | 100.0 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 100.0 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 100.0 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 100.0 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 100.0 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 100.0 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 100.0 | |
| 3ttj_A | 464 | Mitogen-activated protein kinase 10; JNK3, protein | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 100.0 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 100.0 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 100.0 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 100.0 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 100.0 | |
| 2yex_A | 276 | Serine/threonine-protein kinase CHK1; transferase, | 100.0 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 100.0 | |
| 1phk_A | 298 | Phosphorylase kinase; glycogen metabolism, transfe | 100.0 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 100.0 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 100.0 | |
| 2izr_A | 330 | Casein kinase I isoform gamma-3; serine/threonine- | 100.0 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 100.0 | |
| 3mi9_A | 351 | Cell division protein kinase 9; P-TEFB, HIV-1, pro | 100.0 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 100.0 | |
| 3n9x_A | 432 | Phosphotransferase; malaria kinase, structural gen | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 100.0 | |
| 3llt_A | 360 | Serine/threonine kinase-1, pflammer; lammer kinase | 100.0 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 2vgo_A | 284 | Serine/threonine-protein kinase 12-A; nucleotide-b | 99.98 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 99.98 | |
| 2h6d_A | 276 | 5'-AMP-activated protein kinase catalytic subunit | 99.98 | |
| 2h34_A | 309 | Serine/threonine-protein kinase PKNE; apoenzyme, t | 99.98 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 99.98 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 99.98 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 99.98 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 99.98 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 99.98 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 99.98 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.98 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 99.98 | |
| 1x8b_A | 289 | WEE1HU, WEE1-like protein kinase; cell cycle, tran | 99.98 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 99.98 | |
| 2xrw_A | 371 | Mitogen-activated protein kinase 8; transcription, | 99.98 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 99.98 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 99.98 | |
| 3g33_A | 308 | Cell division protein kinase 4; Ser/Thr protein ki | 99.98 | |
| 1cm8_A | 367 | Phosphorylated MAP kinase P38-gamma; phosphorylati | 99.98 | |
| 2ycf_A | 322 | Serine/threonine-protein kinase CHK2; transferase, | 99.98 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.98 | |
| 4fl3_A | 635 | Tyrosine-protein kinase SYK; transferase; HET: ANP | 99.98 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.98 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 99.98 | |
| 2r3i_A | 299 | Cell division protein kinase 2; serine/threonine-p | 99.98 | |
| 3lm5_A | 327 | Serine/threonine-protein kinase 17B; STK17B, serin | 99.98 | |
| 3fme_A | 290 | Dual specificity mitogen-activated protein kinase; | 99.98 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 99.98 | |
| 3qyz_A | 364 | Mitogen-activated protein kinase 1; transferase, s | 99.98 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 99.98 | |
| 3nsz_A | 330 | CK II alpha, casein kinase II subunit alpha; inhib | 99.98 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 99.97 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 99.97 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 99.97 | |
| 1csn_A | 298 | Casein kinase-1; phosphotransferase; HET: ATP; 2.0 | 99.97 | |
| 2i6l_A | 320 | Mitogen-activated protein kinase 6; MAPK6, ERK3, e | 99.97 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 99.97 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.97 | |
| 3byv_A | 377 | Rhoptry kinase; malaria, transferase, structural g | 99.97 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 99.97 | |
| 2wtk_C | 305 | Serine/threonine-protein kinase 11; transferase-me | 99.97 | |
| 4e7w_A | 394 | Glycogen synthase kinase 3; GSK3, PTyr195, transfe | 99.97 | |
| 3q60_A | 371 | ROP5B; pseudokinase, transferase; HET: ATP; 1.72A | 99.97 | |
| 3pg1_A | 362 | Mitogen-activated protein kinase, putative (MAP K | 99.97 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 99.97 | |
| 2wei_A | 287 | Calmodulin-domain protein kinase 1, putative; nucl | 99.97 | |
| 2fst_X | 367 | Mitogen-activated protein kinase 14; active mutant | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 99.97 | |
| 3e3p_A | 360 | Protein kinase, putative glycogen synthase kinase; | 99.97 | |
| 2v62_A | 345 | Serine/threonine-protein kinase VRK2; transferase, | 99.97 | |
| 3op5_A | 364 | Serine/threonine-protein kinase VRK1; adenosine tr | 99.97 | |
| 2b9h_A | 353 | MAP kinase FUS3, mitogen-activated protein kinase | 99.97 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 4exu_A | 371 | Mitogen-activated protein kinase 13; P38 kinase, t | 99.97 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 99.97 | |
| 2pml_X | 348 | PFPK7, Ser/Thr protein kinase; phosphorylati trans | 99.97 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.97 | |
| 3rgf_A | 405 | Cyclin-dependent kinase 8; protein kinase complex, | 99.97 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 99.97 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 99.97 | |
| 3kvw_A | 429 | DYRK2, dual specificity tyrosine-phosphorylation-r | 99.97 | |
| 3eb0_A | 383 | Putative uncharacterized protein; kinase cryptospo | 99.97 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 99.97 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 99.97 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 99.97 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 99.97 | |
| 1wak_A | 397 | Serine/threonine-protein kinase SPRK1; SRPK, trans | 99.97 | |
| 3ll6_A | 337 | Cyclin G-associated kinase; transferase, protein k | 99.97 | |
| 3uzp_A | 296 | CKI-delta, CKID, casein kinase I isoform delta; CK | 99.97 | |
| 4hgt_A | 296 | Casein kinase I isoform delta; CK1D, inhibitor, tr | 99.97 | |
| 3coi_A | 353 | Mitogen-activated protein kinase 13; P38D, P38delt | 99.97 | |
| 3fhr_A | 336 | MAP kinase-activated protein kinase 3; kinase-inhi | 99.97 | |
| 2jii_A | 352 | Serine/threonine-protein kinase VRK3 molecule: VA | 99.97 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 99.97 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.97 | |
| 1blx_A | 326 | Cyclin-dependent kinase 6; inhibitor protein, cycl | 99.97 | |
| 2dyl_A | 318 | Dual specificity mitogen-activated protein kinase | 99.97 | |
| 1z57_A | 339 | Dual specificity protein kinase CLK1; protein tyro | 99.97 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 99.97 | |
| 2vx3_A | 382 | Dual specificity tyrosine-phosphorylation- regula | 99.97 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.97 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 99.97 | |
| 2iwi_A | 312 | Serine/threonine-protein kinase PIM-2; nucleotide- | 99.97 | |
| 3a99_A | 320 | Proto-oncogene serine/threonine-protein kinase PI; | 99.97 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.97 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.97 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.97 | |
| 1q8y_A | 373 | SR protein kinase; transferase; HET: ADP ADE; 2.05 | 99.97 | |
| 3sv0_A | 483 | Casein kinase I-like; typical kinase domain fold, | 99.97 | |
| 2eu9_A | 355 | Dual specificity protein kinase CLK3; kinase domai | 99.96 | |
| 3uqc_A | 286 | Probable conserved transmembrane protein; structur | 99.96 | |
| 3m2w_A | 299 | MAP kinase-activated protein kinase 2; small molec | 99.96 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.96 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.95 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 2vuw_A | 336 | Serine/threonine-protein kinase haspin; cell cycle | 99.94 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.94 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.92 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.91 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.91 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.9 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.9 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.9 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.89 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.89 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.89 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.88 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.88 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.88 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.87 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.87 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.87 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.87 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.84 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.84 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.83 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.82 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.82 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.82 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 99.81 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.79 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.78 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.78 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.77 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.77 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.77 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.77 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.77 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.77 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.77 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.76 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.76 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.75 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.74 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.72 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.72 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.72 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.72 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.71 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.69 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.66 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.65 | |
| 1zar_A | 282 | RIO2 kinase; serine kinase, winged-helix, RIO doma | 99.64 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.64 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.63 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.63 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.63 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.61 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.59 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.59 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.58 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.57 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.56 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.55 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.51 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.5 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.48 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.47 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.39 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.37 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.36 | |
| 1zth_A | 258 | RIO1 serine protein kinase; ribosome biogenesis, r | 99.35 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.34 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.3 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.24 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.21 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.18 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.16 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.11 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.09 | |
| 4gyi_A | 397 | RIO2 kinase; protein kinase, ADP complex, phosphoa | 99.0 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.99 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.92 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.88 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.8 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.73 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.36 | |
| 1nd4_A | 264 | Aminoglycoside 3'-phosphotransferase; protein kina | 98.34 | |
| 3tm0_A | 263 | Aminoglycoside 3'-phosphotransferase; protein kina | 98.33 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.21 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.21 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.15 | |
| 3dxp_A | 359 | Putative acyl-COA dehydrogenase; protein kinase-li | 97.73 | |
| 3sg8_A | 304 | APH(2'')-ID; antibiotic resistance enzyme, transfe | 97.61 | |
| 3r70_A | 320 | Aminoglycoside phosphotransferase; structural geno | 97.54 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.52 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.5 | |
| 4gkh_A | 272 | Aminoglycoside 3'-phosphotransferase APHA1-IAB; py | 97.1 | |
| 3d1u_A | 288 | Putative fructosamine-3-kinase; YP_290396.1, struc | 96.86 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.76 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.54 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.24 | |
| 3tdw_A | 306 | Gentamicin resistance protein; kinase, phosphoryl | 95.87 | |
| 3ovc_A | 362 | Hygromycin-B 4-O-kinase; aminoglycoside phosphotra | 95.74 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.25 | |
| 3jr1_A | 312 | Putative fructosamine-3-kinase; YP_719053.1, struc | 92.71 | |
| 3f7w_A | 288 | Putative fructosamine-3-kinase; YP_290396.1, struc | 92.62 | |
| 2q83_A | 346 | YTAA protein; 2635576, structural genomics, joint | 92.03 | |
| 2pyw_A | 420 | Uncharacterized protein; 5-methylthioribose kinase | 91.61 | |
| 2olc_A | 397 | MTR kinase, methylthioribose kinase; kinase ADP-2H | 89.85 | |
| 2ppq_A | 322 | HSK, HK, homoserine kinase; structural genomics, M | 88.08 | |
| 3feg_A | 379 | Choline/ethanolamine kinase; non-protein kinase, c | 87.33 | |
| 3dxq_A | 301 | Choline/ethanolamine kinase family protein; NP_106 | 85.12 | |
| 3cxl_A | 463 | N-chimerin; SH2, RHO-GAP, structural genomics cons | 81.11 |
| >3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-46 Score=379.37 Aligned_cols=232 Identities=22% Similarity=0.357 Sum_probs=171.2
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
+++...+.||+|+||+||+|++.+ .||||+++.... .....+.|.+|++++++++|||||+++|++.+ +..++||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~--~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm 110 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDP--TPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT 110 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEE
Confidence 467778899999999999998754 489998864332 23445789999999999999999999998865 5689999
Q ss_pred EecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCC--CC
Q 042735 501 EYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS--SN 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~--~~ 553 (667)
|||++|+|.++|.... ...|.||||+|||||+++.+||+|||+|+...... ..
T Consensus 111 Ey~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~ 190 (307)
T 3omv_A 111 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQ 190 (307)
T ss_dssp ECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCBC---------
T ss_pred EcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccCceecccCCccee
Confidence 9999999999885432 11245999999999999999999999998765332 22
Q ss_pred cccccccccccCCC---------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchH
Q 042735 554 WSALVGTYRYVAPD---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE---------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (667)
.+..+||+.||||| |+.|+|||||||++|||+||+.||...... .............|.++...+..
T Consensus 191 ~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~- 266 (307)
T 3omv_A 191 VEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR---DQIIFMVGRGYASPDLSKLYKNC- 266 (307)
T ss_dssp ---CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH---HHHHHHHHTTCCCCCSTTSCTTS-
T ss_pred ecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChH---HHHHHHHhcCCCCCCcccccccc-
Confidence 45578999999999 566899999999999999999998643211 11111111122233322222222
Q ss_pred HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
...+.+++.+||+.||++||||+||+++|+.....+.
T Consensus 267 --~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lp 303 (307)
T 3omv_A 267 --PKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp --CHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred --hHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccCC
Confidence 2356778889999999999999999999887655443
|
| >4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-46 Score=378.01 Aligned_cols=223 Identities=22% Similarity=0.356 Sum_probs=171.2
Q ss_pred cCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
+++...+.||+|+||+||+|++. +++.||||++..... ....++|.+|+.++++++|||||+++|+|.+++
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~---~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~ 102 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAE---GPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQ 102 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CC---C-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccC---hHHHHHHHHHHHHHHhCCCCCCCCcceEEEECC
Confidence 34566778999999999999863 457899999875432 223567999999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhcccc----------------------------------------CCcccccccCCeeecCCC
Q 042735 495 HSILIYEYLKRGSLATNLSNDA----------------------------------------AAEELDISSKNVLLDLEH 534 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~----------------------------------------~~~~~dlk~~NiLld~~~ 534 (667)
..++|||||++|+|.++|.... ...|.||||+|||||+++
T Consensus 103 ~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 103 PLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKL 182 (308)
T ss_dssp SCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG
T ss_pred EEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEECCCC
Confidence 9999999999999999985321 011349999999999999
Q ss_pred ceEEecccccccccCCC--CCcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhh
Q 042735 535 KAHVSDFGIAKFLKPDS--SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVIN 605 (667)
Q Consensus 535 ~~kl~DFGla~~~~~~~--~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~ 605 (667)
++||+|||+|+...... ...+..+||+.||||| |+.++|||||||++|||+| |+.||..... ..+..
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~----~~~~~ 258 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN----QDVVE 258 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH----HHHHH
T ss_pred CEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCH----HHHHH
Confidence 99999999998764332 2234568999999999 7889999999999999999 8999864321 11111
Q ss_pred hhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 606 MRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
. +.....++.++.. ...+.+++.+||+.||++||||+||+++|..
T Consensus 259 ~----i~~~~~~~~p~~~---~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a 303 (308)
T 4gt4_A 259 M----IRNRQVLPCPDDC---PAWVYALMIECWNEFPSRRPRFKDIHSRLRA 303 (308)
T ss_dssp H----HHTTCCCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred H----HHcCCCCCCcccc---hHHHHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence 1 1111111111121 2346788899999999999999999999864
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=380.05 Aligned_cols=225 Identities=24% Similarity=0.472 Sum_probs=168.0
Q ss_pred cCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
++|...+.||+|+||+||+|+++ ++..||||++... .....++|.+|+++|++++|||||+++|+|.+.+
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~----~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~ 116 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA----SESARQDFQREAELLTMLQHQHIVRFFGVCTEGR 116 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC----SHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC----CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC
Confidence 46777889999999999999864 3678999998753 2334578999999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhcccc---------------------------------------CCcccccccCCeeecCCCc
Q 042735 495 HSILIYEYLKRGSLATNLSNDA---------------------------------------AAEELDISSKNVLLDLEHK 535 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~---------------------------------------~~~~~dlk~~NiLld~~~~ 535 (667)
..++|||||++|+|.+++.... ...|.||||+|||||+++.
T Consensus 117 ~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~~~ 196 (329)
T 4aoj_A 117 PLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLV 196 (329)
T ss_dssp SEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTE
T ss_pred EEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEECCCCc
Confidence 9999999999999999875421 0123499999999999999
Q ss_pred eEEecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhh
Q 042735 536 AHVSDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINM 606 (667)
Q Consensus 536 ~kl~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~ 606 (667)
+||+|||+|+....... ..+..+||+.||||| |+.++|||||||++|||+| |+.||..... ......
T Consensus 197 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~----~~~~~~ 272 (329)
T 4aoj_A 197 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN----TEAIDC 272 (329)
T ss_dssp EEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH----HHHHHH
T ss_pred EEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCH----HHHHHH
Confidence 99999999997654322 224568999999999 7889999999999999999 8999864321 111111
Q ss_pred hhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 607 RLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
+.....+..|...+ .++.+++.+||+.||++||||+||+++|.....
T Consensus 273 -i~~g~~~~~p~~~~------~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~ 319 (329)
T 4aoj_A 273 -ITQGRELERPRACP------PEVYAIMRGCWQREPQQRHSIKDVHARLQALAQ 319 (329)
T ss_dssp -HHHTCCCCCCTTCC------HHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHH
T ss_pred -HHcCCCCCCccccc------HHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhh
Confidence 11111222222222 246788889999999999999999999877543
|
| >4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-46 Score=384.46 Aligned_cols=228 Identities=21% Similarity=0.346 Sum_probs=173.8
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
+++|+..+.||+|+||+||+|+. .+++.||||++...... ....+.|.+|+++|++++|||||++++++.+++..|+
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~--~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yi 100 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMS--SKEREESRREVAVLANMKHPNIVQYRESFEENGSLYI 100 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCC--HHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEE
Confidence 36899999999999999999986 56889999998754332 2345689999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 499 IYEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
|||||+||+|.+++..... ..|+||||+|||++.++.+||+|||+|+.......
T Consensus 101 VmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~ 180 (350)
T 4b9d_A 101 VMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVE 180 (350)
T ss_dssp EEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHH
T ss_pred EEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceeecCCcc
Confidence 9999999999998853211 12349999999999999999999999997654333
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
..++.+||+.||||| |+.++||||+||++|||+||+.||..... ..... .+.....++.....
T Consensus 181 ~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~----~~~~~----~i~~~~~~~~~~~~--- 249 (350)
T 4b9d_A 181 LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM----KNLVL----KIISGSFPPVSLHY--- 249 (350)
T ss_dssp HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH----HHHHH----HHHHTCCCCCCTTS---
T ss_pred cccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH----HHHHH----HHHcCCCCCCCccC---
Confidence 345678999999999 78899999999999999999999864321 11111 11111222211111
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..++.+++.+||+.||++|||++|++++.|+...
T Consensus 250 s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~ 283 (350)
T 4b9d_A 250 SYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAKR 283 (350)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHTT
T ss_pred CHHHHHHHHHHccCChhHCcCHHHHhcCHHhhcC
Confidence 1246678889999999999999999999988643
|
| >4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=383.21 Aligned_cols=227 Identities=23% Similarity=0.375 Sum_probs=179.7
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
..|+..+.||+|+||+||+|+. .+|+.||||++..... ...+.+.+|+++|++++|||||++++++.+++..|+|
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~----~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iv 149 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ----QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV 149 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGC----SSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCch----hHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 4588888999999999999986 4688999999864322 1234588999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 500 YEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
||||++|+|.+.+..... ..|.||||+|||++.+|.+||+|||+|+.........++
T Consensus 150 mEy~~gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~ 229 (346)
T 4fih_A 150 MEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKS 229 (346)
T ss_dssp ECCCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCC
T ss_pred EeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccc
Confidence 999999999988764322 124599999999999999999999999987665555667
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
.+||+.||||| |+.++||||+||++|||+||+.||..... ..... .+.....+.++. ......++
T Consensus 230 ~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~----~~~~~-~i~~~~~~~~~~----~~~~s~~~ 300 (346)
T 4fih_A 230 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP----LKAMK-MIRDNLPPRLKN----LHKVSPSL 300 (346)
T ss_dssp CCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH----HHHHH-HHHHSSCCCCSC----GGGSCHHH
T ss_pred cccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH----HHHHH-HHHcCCCCCCCc----cccCCHHH
Confidence 89999999999 78999999999999999999999863221 11111 111111222211 11222356
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.+++.+||+.||++|||++|+++|.||...
T Consensus 301 ~dli~~~L~~dP~~R~ta~e~l~Hp~~~~~ 330 (346)
T 4fih_A 301 KGFLDRLLVRDPAQRATAAELLKHPFLAKA 330 (346)
T ss_dssp HHHHHHHSCSSTTTSCCHHHHTTCGGGGGC
T ss_pred HHHHHHHcCCChhHCcCHHHHhcCHhhcCC
Confidence 788889999999999999999999999754
|
| >4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=375.61 Aligned_cols=223 Identities=26% Similarity=0.445 Sum_probs=171.2
Q ss_pred cCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
++|...+.||+|+||+||+|++. ++..||||+++.. .....++|.+|+++|++++|||||+++|+|.+++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~----~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~ 88 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA----SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGD 88 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC----CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC----ChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC
Confidence 46778889999999999999864 3678999998653 2234578999999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhcccc-------------------------------------CCcccccccCCeeecCCCceE
Q 042735 495 HSILIYEYLKRGSLATNLSNDA-------------------------------------AAEELDISSKNVLLDLEHKAH 537 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~-------------------------------------~~~~~dlk~~NiLld~~~~~k 537 (667)
..++|||||++|+|.++|.... ...|.||||+|||+|+++.+|
T Consensus 89 ~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~~~K 168 (299)
T 4asz_A 89 PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVK 168 (299)
T ss_dssp SEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEE
T ss_pred EEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCCCcEE
Confidence 9999999999999999885421 012349999999999999999
Q ss_pred EecccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhh
Q 042735 538 VSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRL 608 (667)
Q Consensus 538 l~DFGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~ 608 (667)
|+|||+|+........ ....+||+.||||| |+.|+|||||||++|||+| |+.||..... ..+....
T Consensus 169 i~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~----~~~~~~i- 243 (299)
T 4asz_A 169 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN----NEVIECI- 243 (299)
T ss_dssp ECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH----HHHHHHH-
T ss_pred ECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH----HHHHHHH-
Confidence 9999999976543322 22357999999999 7889999999999999999 8999864321 1111111
Q ss_pred ccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 609 DEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.....+..|...+ .++.+++.+||+.||++||||+||.+.|...
T Consensus 244 ~~~~~~~~p~~~~------~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~ 287 (299)
T 4asz_A 244 TQGRVLQRPRTCP------QEVYELMLGCWQREPHMRKNIKGIHTLLQNL 287 (299)
T ss_dssp HHTCCCCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HcCCCCCCCccch------HHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 1111112222222 2467888899999999999999999888754
|
| >3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-45 Score=365.88 Aligned_cols=223 Identities=21% Similarity=0.354 Sum_probs=168.4
Q ss_pred cCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe----CCceEE
Q 042735 424 DAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH----ARHSIL 498 (667)
Q Consensus 424 ~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~----~~~~~l 498 (667)
...+.||+|+||+||+|... ++..||||++...... ....+.|.+|++++++++|||||+++|+|.+ .+..|+
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~--~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~l 106 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT--KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL 106 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC--HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCC--HHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEE
Confidence 44567999999999999864 5788999998653222 2345679999999999999999999999875 345899
Q ss_pred EEEecCCCChHHHhcccc------------------------C--CcccccccCCeeec-CCCceEEecccccccccCCC
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------A--AEELDISSKNVLLD-LEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~--~~~~dlk~~NiLld-~~~~~kl~DFGla~~~~~~~ 551 (667)
|||||++|+|.+++.... . ..|+||||+|||++ .++.+||+|||+|+....
T Consensus 107 vmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~-- 184 (290)
T 3fpq_A 107 VTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA-- 184 (290)
T ss_dssp EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT--
T ss_pred EEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCC--
Confidence 999999999988764311 1 34679999999998 479999999999986432
Q ss_pred CCcccccccccccCCC-----CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 552 SNWSALVGTYRYVAPD-----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE-----~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
...++.+||+.||||| |+.++|||||||++|||+||+.||..... ...... .+.....+...+ ...
T Consensus 185 ~~~~~~~GTp~YmAPE~~~~~y~~~~DiwSlGvilyelltg~~Pf~~~~~----~~~~~~---~i~~~~~~~~~~--~~~ 255 (290)
T 3fpq_A 185 SFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQN----AAQIYR---RVTSGVKPASFD--KVA 255 (290)
T ss_dssp TSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSS----HHHHHH---HHTTTCCCGGGG--GCC
T ss_pred CccCCcccCccccCHHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCc----HHHHHH---HHHcCCCCCCCC--ccC
Confidence 3345679999999999 78999999999999999999999853221 111111 111111111110 011
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..++.+++.+||+.||++|||++|+++|.|+..
T Consensus 256 ~~~~~~li~~~L~~dP~~R~s~~e~l~Hp~~~~ 288 (290)
T 3fpq_A 256 IPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQE 288 (290)
T ss_dssp CHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC-
T ss_pred CHHHHHHHHHHccCChhHCcCHHHHhcCccccC
Confidence 224677888999999999999999999999854
|
| >4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=381.36 Aligned_cols=227 Identities=23% Similarity=0.375 Sum_probs=180.0
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
..|+..+.||+|+||.||+|+. .+|+.||||++...... ..+.+.+|+++|++++|||||++++++.+.+..|+|
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~----~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iV 226 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ----RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV 226 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCS----SGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchh----HHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEE
Confidence 4688889999999999999986 46889999998653221 234588999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 500 YEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
||||+||+|.+.+..... ..|+||||+||||+.+|.+||+|||+|+.........++
T Consensus 227 mEy~~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~ 306 (423)
T 4fie_A 227 MEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKS 306 (423)
T ss_dssp EECCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCC
T ss_pred EeCCCCCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCccccc
Confidence 999999999988754322 224599999999999999999999999987665555667
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
.+||+.||||| |+.++|||||||++|||+||+.||...... .... .+.....+.+.... .....+
T Consensus 307 ~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~----~~~~-~i~~~~~~~~~~~~----~~s~~~ 377 (423)
T 4fie_A 307 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL----KAMK-MIRDNLPPRLKNLH----KVSPSL 377 (423)
T ss_dssp CEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH----HHHH-HHHHSCCCCCSCTT----SSCHHH
T ss_pred cccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH----HHHH-HHHcCCCCCCcccc----cCCHHH
Confidence 89999999999 789999999999999999999998632211 1111 11111222222111 112246
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.+++.+||+.||++|||++|+++|.|+...
T Consensus 378 ~dli~~~L~~dP~~R~ta~ell~Hp~~~~~ 407 (423)
T 4fie_A 378 KGFLDRLLVRDPAQRATAAELLKHPFLAKA 407 (423)
T ss_dssp HHHHHHHSCSSTTTSCCHHHHTTCGGGGGC
T ss_pred HHHHHHHcCCChhHCcCHHHHhcCHHhcCC
Confidence 678889999999999999999999998754
|
| >4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-45 Score=370.06 Aligned_cols=231 Identities=19% Similarity=0.278 Sum_probs=180.4
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||+||+|+. .+++.||||++.+.... .....+.+.+|+++|++++|||||++++++.+.+..|+|
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~-~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yiv 110 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHII-KENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG 110 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHH-HTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCC-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 5799999999999999999986 56889999998642110 112245789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCC--CC
Q 042735 500 YEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS--SN 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~--~~ 553 (667)
||||+||+|.+.+..... ..|+||||+|||++.++.+||+|||+|+.+.... ..
T Consensus 111 mEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~ 190 (311)
T 4aw0_A 111 LSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR 190 (311)
T ss_dssp ECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCC
T ss_pred EecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCccc
Confidence 999999999988864321 1245999999999999999999999999875432 23
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
..+.+||+.||||| |+.++||||+||++|||+||+.||...+. .......... ...+|...+
T Consensus 191 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~----~~~~~~i~~~--~~~~p~~~s------ 258 (311)
T 4aw0_A 191 ANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE----GLIFAKIIKL--EYDFPEKFF------ 258 (311)
T ss_dssp BCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHHT--CCCCCTTCC------
T ss_pred ccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHHcC--CCCCCcccC------
Confidence 45689999999999 78899999999999999999999864321 1111111111 222332222
Q ss_pred HHHHHHHHhccccCCCCCCCHHH------HHHHHHHhhhhhcc
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQT------ITQQLLFSLVYFSY 664 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~e------v~~~l~~~~~~~~~ 664 (667)
.++.+++.+||+.||++|||++| |++|.||..+.|+.
T Consensus 259 ~~~~dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~idw~~ 301 (311)
T 4aw0_A 259 PKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWEN 301 (311)
T ss_dssp HHHHHHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCCTT
T ss_pred HHHHHHHHHHccCCHhHCcChHHHcCCHHHHCCCCcCCCCHHH
Confidence 24567888999999999999987 57888998877653
|
| >3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-44 Score=356.69 Aligned_cols=229 Identities=22% Similarity=0.299 Sum_probs=162.8
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
+++|+..+.||+|+||+||+|+. .+++.||||++.+..... ....+.+.+|++++++++|||||++++++.+.+..|+
T Consensus 12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~i 90 (275)
T 3hyh_A 12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAK-SDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIM 90 (275)
T ss_dssp --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCC-HHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 47899999999999999999986 568899999986543221 2234679999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||| +|+|.+.+.... ...|+||||+|||++.++++||+|||+|+...... ..
T Consensus 91 vmEy~-~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~-~~ 168 (275)
T 3hyh_A 91 VIEYA-GNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN-FL 168 (275)
T ss_dssp EEECC-CEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC----------
T ss_pred EEeCC-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCCeecCCCC-cc
Confidence 99999 689988775432 12245999999999999999999999998765432 34
Q ss_pred ccccccccccCCC------C-CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 555 SALVGTYRYVAPD------Y-RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~-~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
++.+||+.||||| | +.++||||+||++|||+||+.||..... .......... .+.++...+
T Consensus 169 ~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~----~~~~~~i~~~--~~~~p~~~s------ 236 (275)
T 3hyh_A 169 KTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI----PVLFKNISNG--VYTLPKFLS------ 236 (275)
T ss_dssp ------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHHT--CCCCCTTSC------
T ss_pred CCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCH----HHHHHHHHcC--CCCCCCCCC------
Confidence 5679999999999 4 4689999999999999999999863221 1111111111 122222221
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
.++.+++.+||+.||++|||++|++++.|+.....+
T Consensus 237 ~~~~~li~~~L~~dP~~R~s~~eil~hpw~k~~~p~ 272 (275)
T 3hyh_A 237 PGAAGLIKRMLIVNPLNRISIHEIMQDDWFKVDLPE 272 (275)
T ss_dssp HHHHHHHHHHSCSSGGGSCCHHHHHHCHHHHTTCCG
T ss_pred HHHHHHHHHHccCChhHCcCHHHHHcCcccccCCCh
Confidence 245678889999999999999999999999765433
|
| >3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-45 Score=368.18 Aligned_cols=229 Identities=23% Similarity=0.342 Sum_probs=172.2
Q ss_pred cCCcCcceeecccCeEEEEEEeC----CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~----~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
++|+..+.||+|+||+||+|+.. .++.||||++....... .....+.+|++++++++|||||++++++.+++..
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~--~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~ 101 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKV--RDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKL 101 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEE--EECC------CCCCCCCCTTEECEEEEEEETTEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcCh--HHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEE
Confidence 57999999999999999999753 36789999986532211 1223588999999999999999999999999999
Q ss_pred EEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
|+|||||+||+|.+.+.... ...|+||||+|||++.++.+||+|||+|+.......
T Consensus 102 ~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~ 181 (304)
T 3ubd_A 102 YLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK 181 (304)
T ss_dssp EEEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC-----C
T ss_pred EEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCEEecccccceeccCCCc
Confidence 99999999999998875432 122459999999999999999999999997655444
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
...+.+||+.||||| |+.++||||+||++|||+||+.||...+. .......... .+..|...+
T Consensus 182 ~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~----~~~~~~i~~~--~~~~p~~~s----- 250 (304)
T 3ubd_A 182 KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDR----KETMTMILKA--KLGMPQFLS----- 250 (304)
T ss_dssp CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHHC--CCCCCTTSC-----
T ss_pred cccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCH----HHHHHHHHcC--CCCCCCcCC-----
Confidence 556789999999999 78999999999999999999999864321 1111111111 122222222
Q ss_pred HHHHHHHHHhccccCCCCCCC-----HHHHHHHHHHhhhhhc
Q 042735 627 LISIMEVAFSCLDVSPESRPT-----MQTITQQLLFSLVYFS 663 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt-----~~ev~~~l~~~~~~~~ 663 (667)
.++.+++.+||+.||++||| ++|+++|.||..+.|+
T Consensus 251 -~~~~~li~~~L~~dP~~R~ta~~~~~~eil~Hp~f~~idw~ 291 (304)
T 3ubd_A 251 -PEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWN 291 (304)
T ss_dssp -HHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTSGGGTTCCHH
T ss_pred -HHHHHHHHHHcccCHHHCCCCCcCCHHHHHcCccccCCCHH
Confidence 24567888999999999998 5899999999987765
|
| >4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=367.46 Aligned_cols=228 Identities=25% Similarity=0.395 Sum_probs=174.3
Q ss_pred HcCCcCcceeecccCeEEEEEEeCC------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCC-CCeeEEEEEEEe
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPS------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH-RNIVKFYGFCSH 492 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H-~niv~~~g~~~~ 492 (667)
.++|+..+.||+|+||+||+|.+.. ++.||||++..... ....+.|.+|+++|++++| ||||+++|+|.+
T Consensus 63 ~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~---~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~ 139 (353)
T 4ase_A 63 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLLGACTK 139 (353)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECC
T ss_pred HHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccC---hHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEe
Confidence 3678889999999999999998643 35799999875432 2345679999999999975 999999999976
Q ss_pred C-CceEEEEEecCCCChHHHhcccc----------------------------------------CCcccccccCCeeec
Q 042735 493 A-RHSILIYEYLKRGSLATNLSNDA----------------------------------------AAEELDISSKNVLLD 531 (667)
Q Consensus 493 ~-~~~~lv~ey~~~g~L~~~l~~~~----------------------------------------~~~~~dlk~~NiLld 531 (667)
. +..++|||||++|+|.++|.... ...|.||||+|||++
T Consensus 140 ~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NILl~ 219 (353)
T 4ase_A 140 PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLS 219 (353)
T ss_dssp TTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC
T ss_pred cCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCccceeeC
Confidence 5 56899999999999999885321 012449999999999
Q ss_pred CCCceEEecccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChh
Q 042735 532 LEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPS 602 (667)
Q Consensus 532 ~~~~~kl~DFGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~ 602 (667)
+++.+||+|||+|+....+... .+..+||+.||||| |+.++|||||||++|||+| |+.||..... ..
T Consensus 220 ~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~----~~ 295 (353)
T 4ase_A 220 EKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI----DE 295 (353)
T ss_dssp GGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC----SH
T ss_pred CCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCH----HH
Confidence 9999999999999976544332 34568999999999 7899999999999999998 8999864321 11
Q ss_pred hhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 603 VINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.....+.....+..|...+ .++.+++.+||+.||++||||+||+++|.....
T Consensus 296 ~~~~~i~~g~~~~~p~~~~------~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq 347 (353)
T 4ase_A 296 EFCRRLKEGTRMRAPDYTT------PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 347 (353)
T ss_dssp HHHHHHHHTCCCCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCccCC------HHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHH
Confidence 1111122222222332222 246778889999999999999999999876543
|
| >3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=362.16 Aligned_cols=231 Identities=26% Similarity=0.328 Sum_probs=165.6
Q ss_pred CCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC----ceE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR----HSI 497 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~----~~~ 497 (667)
++...+.||+|+||+||+|++ +|+.||||++... ......+.+|+..+.+++|||||+++|+|.+++ ..+
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~-----~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~ 77 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR-----EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGG-----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred EEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECcc-----chhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEE
Confidence 456778899999999999998 5788999998532 111222345666677899999999999998754 579
Q ss_pred EEEEecCCCChHHHhcccc-------------------------------CCcccccccCCeeecCCCceEEeccccccc
Q 042735 498 LIYEYLKRGSLATNLSNDA-------------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKF 546 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~-------------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~ 546 (667)
+|||||++|+|.+++.... ...|.||||+|||+|.++++||+|||+|+.
T Consensus 78 lV~Ey~~~gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~ 157 (303)
T 3hmm_A 78 LVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR 157 (303)
T ss_dssp EEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred EEecCCCCCcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCcc
Confidence 9999999999998775321 223669999999999999999999999997
Q ss_pred ccCCCCC----cccccccccccCCCC------------CCCchHHHHHHHHHHHHhCCCCCCCCccC-CCCh-------h
Q 042735 547 LKPDSSN----WSALVGTYRYVAPDY------------RKKCDVYSFRVLALEVIKGKHPRGFVSSI-LPSP-------S 602 (667)
Q Consensus 547 ~~~~~~~----~~~~~Gt~~y~aPE~------------~~~~DV~sfGvvl~ElltG~~p~~~~~~~-~~~~-------~ 602 (667)
....... ....+||+.|||||+ +.|+|||||||++|||+||++|+...... .+.. .
T Consensus 158 ~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~ 237 (303)
T 3hmm_A 158 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS 237 (303)
T ss_dssp EETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred ccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccch
Confidence 6544322 234689999999993 34799999999999999998876532211 1110 0
Q ss_pred ---hhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 603 ---VINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 603 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..........+|.+|.... ..+....+.+++.+||+.||++||||.||+++|....
T Consensus 238 ~~~~~~~~~~~~~rp~~p~~~~-~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~ 296 (303)
T 3hmm_A 238 VEEMRKVVCEQKLRPNIPNRWQ-SCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLS 296 (303)
T ss_dssp HHHHHHHHTTSCCCCCCCGGGG-SSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCCcccc-chHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHH
Confidence 1111112223333332211 1234456788999999999999999999999987654
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=362.77 Aligned_cols=223 Identities=23% Similarity=0.262 Sum_probs=169.7
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||+||+|+. .+++.||||++..... +.+|++++++++|||||++++++.+++..|+
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~---------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~i 127 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF---------RVEELVACAGLSSPRIVPLYGAVREGPWVNI 127 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC---------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEE
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh---------HHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 45678888999999999999986 4588999999865321 2469999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCC-ceEEecccccccccCCCC-
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEH-KAHVSDFGIAKFLKPDSS- 552 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~-~~kl~DFGla~~~~~~~~- 552 (667)
|||||+||+|.+++.... ...|+||||+|||++.+| ++||+|||+|+.......
T Consensus 128 vmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~ 207 (336)
T 4g3f_A 128 FMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLG 207 (336)
T ss_dssp EECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC------
T ss_pred EEeccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcc
Confidence 999999999999885432 122459999999999987 699999999997754321
Q ss_pred ----CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccC-CCCCCCCC
Q 042735 553 ----NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD-PRLPPPSP 621 (667)
Q Consensus 553 ----~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 621 (667)
....++||+.||||| |+.++|||||||++|||+||+.||...........+. ..... ..+++..+
T Consensus 208 ~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~----~~~~~~~~~~~~~s 283 (336)
T 4g3f_A 208 KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIA----SEPPPIREIPPSCA 283 (336)
T ss_dssp ------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHH----HSCCGGGGSCTTSC
T ss_pred cceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHH----cCCCCchhcCccCC
Confidence 123468999999999 7889999999999999999999986433211111111 11000 01122111
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
..+.+++.+||+.||++|||++|+++++......
T Consensus 284 ------~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~ 317 (336)
T 4g3f_A 284 ------PLTAQAIQEGLRKEPVHRASAMELRRKVGKALQE 317 (336)
T ss_dssp ------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhh
Confidence 2456788899999999999999999998776544
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=391.37 Aligned_cols=327 Identities=31% Similarity=0.443 Sum_probs=242.8
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCcc-ccCCCCCCeeeccccccceeCCCCCccc--c----
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSS-VGNLSSLRYLFLFENNLSGSIPPSVGNL--M---- 75 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~~--~---- 75 (667)
++|+.|+|++|.+++.+|..|.++++|++|+|++|++.+.+|.. ++++++|++|+|++|++++.+|..+... +
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 67777777777777777777777777777777777777666654 6777777777777777766666554431 3
Q ss_pred ----------------------cCEEEcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCc
Q 042735 76 ----------------------LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNN 133 (667)
Q Consensus 76 ----------------------L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~ 133 (667)
|+.|+|++|.+++.+|..+..+++|+.|++++|.+++.+|..+.++++|+.|+|++|.
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc
Confidence 5555555555555666666667777777777777777777777777777777777777
Q ss_pred cccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCcc
Q 042735 134 MRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKE 213 (667)
Q Consensus 134 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 213 (667)
+++.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|+|++|++++.+|..++++++|++|+|++|.+.+.+|..
T Consensus 454 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 533 (768)
T 3rgz_A 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH
Confidence 77777777777777777777777777777777777777888888888777777777777788888888888877777777
Q ss_pred ccCCcccceeecccccccccCcccc-------------------------------------------------------
Q 042735 214 FGKLNSLTKLILRGNQLIGHLPSEI------------------------------------------------------- 238 (667)
Q Consensus 214 ~~~l~~L~~L~L~~n~l~~~~p~~~------------------------------------------------------- 238 (667)
++.+++|+.|++++|.+++.+|..+
T Consensus 534 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (768)
T 3rgz_A 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613 (768)
T ss_dssp GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS
T ss_pred HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence 7788888888888877776666433
Q ss_pred ---------------cCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCC
Q 042735 239 ---------------GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLG 303 (667)
Q Consensus 239 ---------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 303 (667)
+.+++|++|+|++|+++|.+|..+++++.|+.|+|++|++.+.+|..++.+++|+.||+++|.++
T Consensus 614 ~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp CTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 23466778888888888888888888888888888888888888888888888888888888888
Q ss_pred CcCcccccCCcccccc----ccccccCCCC
Q 042735 304 REIPSQICSMECCEVF----CTITNSVPTN 329 (667)
Q Consensus 304 ~~ip~~~~~~~~~~~~----~~~~~~~~~~ 329 (667)
+.+|..+..+..++.+ |.+++.+|..
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 8888887777666554 4456666654
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=354.20 Aligned_cols=228 Identities=21% Similarity=0.405 Sum_probs=163.1
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC----
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR---- 494 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~---- 494 (667)
.+||+..+.||+|+||+||+|+. .+++.||||++.... .....+.+.+|+++|++++|||||++++++.+.+
T Consensus 4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~ 80 (299)
T 4g31_A 4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN---RELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEK 80 (299)
T ss_dssp HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS---SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC----
T ss_pred chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccc
Confidence 46799999999999999999986 468899999986432 2234567999999999999999999999997654
Q ss_pred --------ceEEEEEecCCCChHHHhccccC---------------------------CcccccccCCeeecCCCceEEe
Q 042735 495 --------HSILIYEYLKRGSLATNLSNDAA---------------------------AEELDISSKNVLLDLEHKAHVS 539 (667)
Q Consensus 495 --------~~~lv~ey~~~g~L~~~l~~~~~---------------------------~~~~dlk~~NiLld~~~~~kl~ 539 (667)
..|+|||||++|+|.+++..... ..|.||||+|||++.++.+||+
T Consensus 81 ~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vKl~ 160 (299)
T 4g31_A 81 LQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVG 160 (299)
T ss_dssp ------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEEC
T ss_pred ccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEEEc
Confidence 36899999999999988864321 1244999999999999999999
Q ss_pred cccccccccCCCC------------CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCCh
Q 042735 540 DFGIAKFLKPDSS------------NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSP 601 (667)
Q Consensus 540 DFGla~~~~~~~~------------~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~ 601 (667)
|||+|+....... ..++.+||+.||||| |+.++|||||||++|||++ ||....
T Consensus 161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~------ 231 (299)
T 4g31_A 161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM------ 231 (299)
T ss_dssp CCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH------
T ss_pred cCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc------
Confidence 9999997654321 123468999999999 7899999999999999997 653211
Q ss_pred hhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 602 SVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
..........+...|+ ..........+++.+||+.||++|||+.|++++.|+....|.
T Consensus 232 -~~~~~~~~~~~~~~p~---~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~p 289 (299)
T 4g31_A 232 -ERVRTLTDVRNLKFPP---LFTQKYPCEYVMVQDMLSPSPMERPEAINIIENAVFEDLDFP 289 (299)
T ss_dssp -HHHHHHHHHHTTCCCH---HHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGCCC---
T ss_pred -HHHHHHHHHhcCCCCC---CCcccCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhCCCCCC
Confidence 0001111112222221 122223345678889999999999999999999999876664
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=382.82 Aligned_cols=319 Identities=34% Similarity=0.503 Sum_probs=255.6
Q ss_pred CCCCCcEEeccCCcCcCCCCccccCC-CCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCC-Ccc-cccC
Q 042735 1 NLTNLRELHLRDNYLTGLIPTETWNL-KSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPS-VGN-LMLT 77 (667)
Q Consensus 1 ~L~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~-~~L~ 77 (667)
++++|+.|+|++|.+++.+|..+.++ ++|++|+|++|++++.+|..|+++++|++|+|++|++++.+|.. +.. .+|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 46899999999999998899888775 99999999999999999999999999999999999999888875 665 5699
Q ss_pred EEEcccccccccCCccccCCC---------------------------CccEEEeeCcccccccCccCCCCCCCcEEEcc
Q 042735 78 VLALENNHFTGNLRHNICRNG---------------------------ALERVIVGGNHFRGPIPKCLRNCPNLVRISLE 130 (667)
Q Consensus 78 ~L~L~~n~l~~~~~~~~~~~~---------------------------~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~ 130 (667)
+|+|++|.+++.+|..+..+. +|+.|++++|.+++.+|..+.++++|+.|+|+
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 999999999887777665543 45555555555555666667777777777777
Q ss_pred CCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccC
Q 042735 131 GNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKI 210 (667)
Q Consensus 131 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 210 (667)
+|.+++.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+.++++|++|+|++|.+.+.+
T Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence 77777777777777777777777777777777777777777777777777777777777777888888888888887777
Q ss_pred CccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhh---------------------------
Q 042735 211 PKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLG--------------------------- 263 (667)
Q Consensus 211 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--------------------------- 263 (667)
|..|+.+++|+.|++++|++.+.+|..++.+++|+.|++++|.++|.+|..+.
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence 87788888888888888888777888888888888888888877766665442
Q ss_pred -------------------------------------------cccCCCeecCCCccCccccchhhhcCCCCCEEECcCC
Q 042735 264 -------------------------------------------NLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN 300 (667)
Q Consensus 264 -------------------------------------------~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n 300 (667)
.+++|+.|++++|++.+.+|.+++.++.|+.|++++|
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666 (768)
T ss_dssp CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence 2356778888888888888888888888888888888
Q ss_pred CCCCcCcccccCCcccccc
Q 042735 301 FLGREIPSQICSMECCEVF 319 (667)
Q Consensus 301 ~l~~~ip~~~~~~~~~~~~ 319 (667)
.+++.+|..++.+..++.+
T Consensus 667 ~l~g~ip~~l~~L~~L~~L 685 (768)
T 3rgz_A 667 DISGSIPDEVGDLRGLNIL 685 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEE
T ss_pred ccCCCCChHHhCCCCCCEE
Confidence 8888888888877776655
|
| >4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-40 Score=346.15 Aligned_cols=237 Identities=18% Similarity=0.286 Sum_probs=172.3
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe------C
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH------A 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~------~ 493 (667)
++|+..+.||+|+||+||+|+. .+|+.||||++..... .....+.+.+|+++|++++|||||++++++.. .
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~--~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~ 131 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFD--VVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEF 131 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTS--SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECcccc--chHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccC
Confidence 4689999999999999999986 5689999999875433 23345678999999999999999999999864 3
Q ss_pred CceEEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccC
Q 042735 494 RHSILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~ 549 (667)
+..|+|||||+ |+|.+.+.... ...|.||||+|||++.++.+||+|||+|+.+..
T Consensus 132 ~~~~ivmE~~~-g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~ 210 (398)
T 4b99_A 132 KSVYVVLDLME-SDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCT 210 (398)
T ss_dssp CCEEEEEECCS-EEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC--
T ss_pred CEEEEEEeCCC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEEeecceeeeccc
Confidence 57899999996 67988775432 123559999999999999999999999987643
Q ss_pred C----CCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh------------
Q 042735 550 D----SSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM------------ 606 (667)
Q Consensus 550 ~----~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~------------ 606 (667)
. ....++.+||+.||||| |+.++||||+||++|||+||++||...+.......+...
T Consensus 211 ~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~ 290 (398)
T 4b99_A 211 SPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAV 290 (398)
T ss_dssp -----CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC--
T ss_pred CccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhh
Confidence 2 22345679999999999 477899999999999999999998633211000000000
Q ss_pred ---hh---ccccCCCCCCCCCc-hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 607 ---RL---DEMLDPRLPPPSPD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 607 ---~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.. ...+.+..+.+... ......++.+++.+||+.||++|||++|+++|.||...
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~ 351 (398)
T 4b99_A 291 GAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKY 351 (398)
T ss_dssp ---CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGTTT
T ss_pred hhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcCHhhCcC
Confidence 00 00000111100000 00011246788899999999999999999999999764
|
| >3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=356.56 Aligned_cols=233 Identities=20% Similarity=0.252 Sum_probs=175.6
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCC--chHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPS--DQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~--~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
+++|+..++||+|+||+||+|+. .+|+.||||++.+.... ..........+++.+++.++|||||++++++.+.+..
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence 47899999999999999999986 45889999998542110 1111112223446677788999999999999999999
Q ss_pred EEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
|+|||||+||+|.+++.... ...|+||||+|||||.+|++||+|||+|+......
T Consensus 268 ylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~- 346 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK- 346 (689)
T ss_dssp EEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCC-
T ss_pred EEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEecccceeeecCCCC-
Confidence 99999999999998875432 12245999999999999999999999999765432
Q ss_pred CcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 553 NWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
..+.+||+.||||| |+.++||||+||++|||+||+.||....... ......... ......|...+
T Consensus 347 -~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~-~~~i~~~i~--~~~~~~p~~~S---- 418 (689)
T 3v5w_A 347 -PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD-KHEIDRMTL--TMAVELPDSFS---- 418 (689)
T ss_dssp -CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCC-HHHHHHHHH--HCCCCCCTTSC----
T ss_pred -CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHhhc--CCCCCCCccCC----
Confidence 34679999999999 6788999999999999999999986322110 001111111 11222232222
Q ss_pred HHHHHHHHHHhccccCCCCCCC-----HHHHHHHHHHhhhhhc
Q 042735 626 KLISIMEVAFSCLDVSPESRPT-----MQTITQQLLFSLVYFS 663 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt-----~~ev~~~l~~~~~~~~ 663 (667)
.++.+++.+||+.||.+|++ ++||++|.||..+.|+
T Consensus 419 --~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~HpfF~~idW~ 459 (689)
T 3v5w_A 419 --PELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQ 459 (689)
T ss_dssp --HHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTSGGGTTCCHH
T ss_pred --HHHHHHHHHHccCCHhHCCCCCCCCHHHHhcCccccCCCHH
Confidence 24567888999999999998 8999999999988775
|
| >4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-39 Score=334.59 Aligned_cols=234 Identities=23% Similarity=0.270 Sum_probs=167.0
Q ss_pred HcCCcCcceeecccCeEEEEEEeC----CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCC
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHAR 494 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~----~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~ 494 (667)
.+.|+..+.||+|+||+||+|+.+ .++.||||++.... ....+.+|++++.++ +|||||++++++.+.+
T Consensus 20 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~------~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~ 93 (361)
T 4f9c_A 20 SNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS------HPIRIAAELQCLTVAGGQDNVMGVKYCFRKND 93 (361)
T ss_dssp GGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS------CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETT
T ss_pred cCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc------CHHHHHHHHHHHHHhcCCCCCceEEEEEEECC
Confidence 367999999999999999999742 45789999886432 234578999999998 5999999999999999
Q ss_pred ceEEEEEecCCCChHHHhccc---------------------cCCcccccccCCeeecCC-CceEEecccccccccCCC-
Q 042735 495 HSILIYEYLKRGSLATNLSND---------------------AAAEELDISSKNVLLDLE-HKAHVSDFGIAKFLKPDS- 551 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~---------------------~~~~~~dlk~~NiLld~~-~~~kl~DFGla~~~~~~~- 551 (667)
..|+|||||++|+|.+.+..- ....|+||||+|||++.+ +.+||+|||+|+......
T Consensus 94 ~~~lvmE~~~g~~L~~~~~~l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~ 173 (361)
T 4f9c_A 94 HVVIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKI 173 (361)
T ss_dssp EEEEEEECCCCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSC
T ss_pred EEEEEEeCCCcccHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCccc
Confidence 999999999999998877431 112355999999999976 899999999998654321
Q ss_pred ---------------------------CCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccC
Q 042735 552 ---------------------------SNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSI 597 (667)
Q Consensus 552 ---------------------------~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~ 597 (667)
...++.+||+.||||| |+.++||||+||++|||+||+.||......
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~~~ 253 (361)
T 4f9c_A 174 ELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDD 253 (361)
T ss_dssp GGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSH
T ss_pred cccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCCCH
Confidence 1123468999999999 677899999999999999999998422110
Q ss_pred C--------------------------------CChhhh--hhhhccccCCCCCCCC----------CchHHHHHHHHHH
Q 042735 598 L--------------------------------PSPSVI--NMRLDEMLDPRLPPPS----------PDVQGKLISIMEV 633 (667)
Q Consensus 598 ~--------------------------------~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 633 (667)
. +..... ..... ..+...+... ........+..++
T Consensus 254 ~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DL 332 (361)
T 4f9c_A 254 LTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLR-GMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDL 332 (361)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC-----------------------CTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhc-cccccccccccccccccccccccccCCHHHHHH
Confidence 0 000000 00000 0000000000 0000111246688
Q ss_pred HHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 634 AFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 634 ~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
+.+||+.||++|||++|+++|.||..+
T Consensus 333 l~~lL~~dP~~R~ta~eaL~Hp~f~~i 359 (361)
T 4f9c_A 333 LDKLLDLNPASRITAEEALLHPFFKDM 359 (361)
T ss_dssp HHHHTCSCTTTSCCHHHHHTSGGGTTC
T ss_pred HHHHCcCChhHCcCHHHHhcCcccCCC
Confidence 899999999999999999999998653
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=351.13 Aligned_cols=230 Identities=19% Similarity=0.317 Sum_probs=178.1
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
+++|+..+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|+++|++++|||||++++++.+.+..|+
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~----~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~i 231 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH----ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVM 231 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS----HHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEE
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccc----hhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEE
Confidence 46899999999999999999976 568899999986532 2345678999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCC--CceEEecccccccccCCC
Q 042735 499 IYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLE--HKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~--~~~kl~DFGla~~~~~~~ 551 (667)
|||||+||+|.+++.... ...|+||||+|||++.+ +.+||+|||+|+.+....
T Consensus 232 v~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~ 311 (573)
T 3uto_A 232 IYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ 311 (573)
T ss_dssp EEECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTS
T ss_pred EEeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCC
Confidence 999999999998885321 11245999999999854 899999999999876443
Q ss_pred CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
...+.+||+.||||| |+.++||||+||++|||++|+.||...... ... ..+.......+.+....
T Consensus 312 -~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~----~~~----~~i~~~~~~~~~~~~~~ 382 (573)
T 3uto_A 312 -SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD----ETL----RNVKSCDWNMDDSAFSG 382 (573)
T ss_dssp -EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH----HHH----HHHHTTCCCCCSGGGTT
T ss_pred -ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH----HHH----HHHHhCCCCCCcccccC
Confidence 345678999999999 678999999999999999999998633211 111 11111111111111111
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
....+.+++.+||+.||++|||++|+++|.|+.....
T Consensus 383 ~s~~~~dli~~~L~~dp~~R~t~~e~l~Hpw~~~~~~ 419 (573)
T 3uto_A 383 ISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNA 419 (573)
T ss_dssp SCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTSCCCC
T ss_pred CCHHHHHHHHHHccCChhHCcCHHHHhcCcCcCCCCC
Confidence 1234668888999999999999999999999875443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=338.13 Aligned_cols=303 Identities=22% Similarity=0.198 Sum_probs=200.6
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccC-CccccCCCCCCeeeccccccceeCCCCCcc-cccCEEE
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSL-PSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLA 80 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~ 80 (667)
++|+.|+|++|.++++.|..|.++++|++|+|++|.+.+.+ |..|.++++|++|+|++|++++..|..++. .+|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 57999999999999988999999999999999999987444 678999999999999999999888888887 5699999
Q ss_pred cccccccccCCcc--ccCCCCccEEEeeCcccccccCcc-CCCCCCCcEEEccCCccccccchhhhcC------------
Q 042735 81 LENNHFTGNLRHN--ICRNGALERVIVGGNHFRGPIPKC-LRNCPNLVRISLEGNNMRGTISEAFGIY------------ 145 (667)
Q Consensus 81 L~~n~l~~~~~~~--~~~~~~L~~L~l~~n~~~~~~p~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~l------------ 145 (667)
|++|.+++..+.. +..+.+|+.|++++|.+.+..|.. +.++++|++|+|++|.+++..+..+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755544 888999999999999999887876 8999999999999999998888777655
Q ss_pred ----------------------CCCCEEECcCCccCCccCccCCC-----------------------------------
Q 042735 146 ----------------------LNLTFLDISDNNFFGEIASNWGK----------------------------------- 168 (667)
Q Consensus 146 ----------------------~~L~~L~L~~n~l~~~~~~~~~~----------------------------------- 168 (667)
++|++|++++|.+.+..|..+..
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 34555555555444333222110
Q ss_pred ----CCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCC
Q 042735 169 ----CPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKL 244 (667)
Q Consensus 169 ----l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 244 (667)
.++|+.|++++|.+.+..|..+.++++|++|+|++|.+.+..|..|+++++|+.|+|++|.+.+..|..++++++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 1344444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCc
Q 042735 245 EFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGRE 305 (667)
Q Consensus 245 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ 305 (667)
++|+|++|++++..|..+..+++|+.|++++|++.+..+..+..+++|+.|++++|++...
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 4445444444444444444444444444444444433333344444444445544444443
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-36 Score=328.34 Aligned_cols=302 Identities=21% Similarity=0.133 Sum_probs=274.8
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEc
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLAL 81 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L 81 (667)
++|+.|+|++|.|+++.|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+.. .+|+.|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 47899999999999988899999999999999999999888999999999999999999998665556666 56999999
Q ss_pred ccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCc
Q 042735 82 ENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGE 161 (667)
Q Consensus 82 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 161 (667)
++|.+.+..+..+..+.+|+.|++++|.+.+..|..+.++++|+.|+|++|++++..+..+..+++|+.|++++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 99999998888999999999999999999988888999999999999999999988888899999999999999999888
Q ss_pred cCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCC
Q 042735 162 IASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSL 241 (667)
Q Consensus 162 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 241 (667)
.+..|..+++|+.|++++|.+.+.+|..+....+|+.|+|++|.+.+..+..|..+++|+.|+|++|.+.+..+..|.++
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 88899999999999999998888888777777899999999999986555678999999999999999998888889999
Q ss_pred CCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCC
Q 042735 242 TKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGR 304 (667)
Q Consensus 242 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~ 304 (667)
++|+.|+|++|++++..|..+.++++|+.|++++|++.+..+..|..+++|++|++++|++..
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 999999999999999889999999999999999999887777788899999999999998853
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=343.08 Aligned_cols=312 Identities=19% Similarity=0.228 Sum_probs=254.4
Q ss_pred CCCCCcEEeccCCcCcCC-----------------CCcccc--CCCCCCEEEccCccccccCCccccCCCCCCeeecccc
Q 042735 1 NLTNLRELHLRDNYLTGL-----------------IPTETW--NLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61 (667)
Q Consensus 1 ~L~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 61 (667)
++++|+.|+|++|.+++. +|..+. ++++|++|+|++|++.+.+|..|+++++|++|+|++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 478999999999999985 788888 9999999999999999999999999999999999999
Q ss_pred c-cce-eCCCCCcc-------cccCEEEcccccccccCCc--cccCCCCccEEEeeCcccccccCccCCCCCCCcEEEcc
Q 042735 62 N-LSG-SIPPSVGN-------LMLTVLALENNHFTGNLRH--NICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLE 130 (667)
Q Consensus 62 ~-l~~-~~p~~~~~-------~~L~~L~L~~n~l~~~~~~--~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~ 130 (667)
+ +++ .+|..++. .+|+.|+|++|.++ .+|. .+..+++|+.|++++|+++|.+| .+.++++|+.|+|+
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 8 887 78887766 56999999999998 7887 89999999999999999998888 88889999999999
Q ss_pred CCccccccchhhhcCCC-CCEEECcCCccCCccCccCCCCC--CCCEEEccCCcCCCCcCcccc-------CCCCcCeee
Q 042735 131 GNNMRGTISEAFGIYLN-LTFLDISDNNFFGEIASNWGKCP--KLSTLNVSMNNITRSIPLEIG-------NLSTLNEFD 200 (667)
Q Consensus 131 ~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~p~~~~-------~l~~L~~L~ 200 (667)
+|.++ .+|..+..+++ |++|++++|.+. .+|..+..++ +|+.|++++|.+.+..|..+. .+++|+.|+
T Consensus 362 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 362 YNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp SSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred CCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 99988 67777888888 999999999887 6777776654 888888888888888887777 777888888
Q ss_pred ccCCcccccCCccccCCcccceeecccccccccCccc-ccCCC-------CCCeeeccCCcCCccchhhhh--cccCCCe
Q 042735 201 LSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSE-IGSLT-------KLEFLNLSTNRFSSLIPESLG--NLLKLHY 270 (667)
Q Consensus 201 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~-------~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~ 270 (667)
|++|.+.+..+..+..+++|+.|+|++|+++ .+|.. +..+. +|+.|+|++|+++ .+|..+. .+++|+.
T Consensus 440 Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~ 517 (636)
T 4eco_A 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVG 517 (636)
T ss_dssp CCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCE
T ss_pred CcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCE
Confidence 8888887443344566788888888888887 44443 33232 7888888888887 4566665 7788888
Q ss_pred ecCCCccCccccchhhhcCCCCCEEEC------cCCCCCCcCcccccCCcccccc
Q 042735 271 LDLSKYQFIQELPKELGKLVQLSELEL------SHNFLGREIPSQICSMECCEVF 319 (667)
Q Consensus 271 L~ls~n~~~~~~p~~l~~l~~L~~L~l------~~n~l~~~ip~~~~~~~~~~~~ 319 (667)
|++++|++.+ +|..++.+++|+.|++ ++|.+.+.+|..++.+..+..+
T Consensus 518 L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp EECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred EECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 8888888766 7877888888888888 4566777777777666655544
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=314.74 Aligned_cols=239 Identities=24% Similarity=0.339 Sum_probs=184.3
Q ss_pred CCcCHHHHHHHHcC----------CcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHh
Q 042735 409 GKFDYVEIIRAIND----------FDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477 (667)
Q Consensus 409 ~~~~~~~~~~~~~~----------f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~ 477 (667)
..++++++..++.. |+..+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|+.++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~----~~~~~~~~E~~~l~~ 98 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQ----QRRELLFNEVVIMRD 98 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC----CSHHHHHHHHHHHTT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccch----hHHHHHHHHHHHHHh
Confidence 56888888888764 666678999999999999875 688999999864322 224568899999999
Q ss_pred cCCCCeeEEEEEEEeCCceEEEEEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCC
Q 042735 478 IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEH 534 (667)
Q Consensus 478 l~H~niv~~~g~~~~~~~~~lv~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~ 534 (667)
++|||||++++++...+..++||||+++|+|.+.+..... ..|.||||+||+++.++
T Consensus 99 l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~ 178 (321)
T 2c30_A 99 YQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDG 178 (321)
T ss_dssp CCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC
T ss_pred CCCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCC
Confidence 9999999999999999999999999999999988764321 12349999999999999
Q ss_pred ceEEecccccccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhh
Q 042735 535 KAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRL 608 (667)
Q Consensus 535 ~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~ 608 (667)
.+||+|||+++.............||+.|+||| |+.++|||||||++|||+||+.||..... ......+
T Consensus 179 ~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~-----~~~~~~~ 253 (321)
T 2c30_A 179 RVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSP-----VQAMKRL 253 (321)
T ss_dssp CEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-----HHHHHHH
T ss_pred cEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHH
Confidence 999999999987665444445678999999999 57789999999999999999999853221 1111111
Q ss_pred ccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 609 DEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.....+.... .......+.+++.+||+.||++|||++|++++.|+...
T Consensus 254 ~~~~~~~~~~----~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~~ 301 (321)
T 2c30_A 254 RDSPPPKLKN----SHKVSPVLRDFLERMLVRDPQERATAQELLDHPFLLQT 301 (321)
T ss_dssp HHSSCCCCTT----GGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGGGC
T ss_pred hcCCCCCcCc----cccCCHHHHHHHHHHccCChhhCcCHHHHhcChhhccC
Confidence 1111111111 11112346678889999999999999999999998644
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=311.41 Aligned_cols=226 Identities=24% Similarity=0.417 Sum_probs=176.4
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|.. .+++.||||++..... ...+.+.+|+.++++++|||||++++++...+..++|
T Consensus 20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 95 (297)
T 3fxz_A 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ----PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV 95 (297)
T ss_dssp GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGC----SCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccc----cHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEE
Confidence 5789999999999999999985 5688999998754322 2245688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 500 YEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
|||+++|+|.+.+..... ..|.||||+|||++.++.+||+|||+++...........
T Consensus 96 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~ 175 (297)
T 3fxz_A 96 MEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST 175 (297)
T ss_dssp EECCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCC
T ss_pred EECCCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccccCC
Confidence 999999999988754321 124499999999999999999999999877655555556
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
..||+.|+||| |+.++|||||||++|||+||+.||...... .... .......+....+ ......+
T Consensus 176 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~----~~~~-~~~~~~~~~~~~~----~~~~~~~ 246 (297)
T 3fxz_A 176 MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL----RALY-LIATNGTPELQNP----EKLSAIF 246 (297)
T ss_dssp CCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH----HHHH-HHHHHCSCCCSCG----GGSCHHH
T ss_pred ccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH----HHHH-HHHhCCCCCCCCc----cccCHHH
Confidence 78999999999 678999999999999999999998532210 0000 0001111111111 1112346
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.+++.+||+.||++|||++|++++.|+..
T Consensus 247 ~~li~~~l~~dp~~Rps~~ell~h~~~~~ 275 (297)
T 3fxz_A 247 RDFLNRCLEMDVEKRGSAKELLQHQFLKI 275 (297)
T ss_dssp HHHHHHHSCSSTTTSCCHHHHTTCGGGGG
T ss_pred HHHHHHHccCChhHCcCHHHHhhChhhcc
Confidence 67888999999999999999999998864
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-36 Score=338.57 Aligned_cols=303 Identities=23% Similarity=0.287 Sum_probs=273.5
Q ss_pred CCCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCcc-ccc-cCCccccCC------CCCCeeeccccccceeCCC--C
Q 042735 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQ-FRG-SLPSSVGNL------SSLRYLFLFENNLSGSIPP--S 70 (667)
Q Consensus 1 ~L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~p~--~ 70 (667)
++++|++|+|++|.+.+.+|..+.++++|++|+|++|+ +++ .+|..++.+ ++|++|+|++|+++ .+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 37899999999999999999999999999999999998 998 899999887 99999999999999 7888 7
Q ss_pred Ccc-cccCEEEcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCC-CcEEEccCCccccccchhhhcCC--
Q 042735 71 VGN-LMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPN-LVRISLEGNNMRGTISEAFGIYL-- 146 (667)
Q Consensus 71 ~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~-L~~L~L~~n~~~~~~~~~~~~l~-- 146 (667)
++. .+|+.|+|++|.++|.+| .+..+.+|+.|++++|.++ .+|..+.++++ |+.|+|++|.++ .+|..+....
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 402 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence 777 469999999999999999 8999999999999999999 78888999999 999999999998 6777777655
Q ss_pred CCCEEECcCCccCCccCccCC-------CCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCcc-ccCC-
Q 042735 147 NLTFLDISDNNFFGEIASNWG-------KCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKE-FGKL- 217 (667)
Q Consensus 147 ~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l- 217 (667)
+|++|++++|.+.+..|..+. .+++|+.|+|++|.++...+..+..+++|++|+|++|.+. .+|.. +..+
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~ 481 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN 481 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc
Confidence 899999999999999999888 8889999999999999655555667999999999999998 45543 4333
Q ss_pred ------cccceeecccccccccCccccc--CCCCCCeeeccCCcCCccchhhhhcccCCCeecC------CCccCccccc
Q 042735 218 ------NSLTKLILRGNQLIGHLPSEIG--SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDL------SKYQFIQELP 283 (667)
Q Consensus 218 ------~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l------s~n~~~~~~p 283 (667)
++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|++ ++|++.+.+|
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 39999999999998 6888887 99999999999999998 7999999999999999 5678889999
Q ss_pred hhhhcCCCCCEEECcCCCCCCcCccccc
Q 042735 284 KELGKLVQLSELELSHNFLGREIPSQIC 311 (667)
Q Consensus 284 ~~l~~l~~L~~L~l~~n~l~~~ip~~~~ 311 (667)
..++.+++|++|++++|.+ +.+|..+.
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred HHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 9999999999999999999 78887654
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-36 Score=306.62 Aligned_cols=227 Identities=27% Similarity=0.386 Sum_probs=165.8
Q ss_pred HcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
.++|+..+.||+|+||.||+|+. .+..||||++..... .....+.|.+|++++++++|||||++++++.+.+..++|
T Consensus 36 ~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 3p86_A 36 WCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDF--HAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIV 112 (309)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCC--SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEE
T ss_pred hhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEE
Confidence 46788899999999999999987 577899999875433 233456799999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc---------------------------C--CcccccccCCeeecCCCceEEecccccccccCC
Q 042735 500 YEYLKRGSLATNLSNDA---------------------------A--AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~---------------------------~--~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
|||+++|+|.+.+.... . ..|.||||+||+++.++.+||+|||+++.....
T Consensus 113 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~ 192 (309)
T 3p86_A 113 TEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKAST 192 (309)
T ss_dssp EECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCCC--------
T ss_pred EecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCCCCCcccccc
Confidence 99999999988775321 1 345699999999999999999999999865544
Q ss_pred CCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchH
Q 042735 551 SSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624 (667)
Q Consensus 551 ~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (667)
........||+.|+||| ++.++|||||||++|||+||+.||..... ................+...+
T Consensus 193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~----~~~~~~~~~~~~~~~~~~~~~--- 265 (309)
T 3p86_A 193 FLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNP----AQVVAAVGFKCKRLEIPRNLN--- 265 (309)
T ss_dssp ---------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCH----HHHHHHHHHSCCCCCCCTTSC---
T ss_pred ccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHHhcCCCCCCCccCC---
Confidence 33344568999999999 57899999999999999999999864321 111111100111112222221
Q ss_pred HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..+.+++.+||+.+|++|||++|+++.|....
T Consensus 266 ---~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~ 297 (309)
T 3p86_A 266 ---PQVAAIIEGCWTNEPWKRPSFATIMDLLRPLI 297 (309)
T ss_dssp ---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 24667888999999999999999999887653
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=329.21 Aligned_cols=170 Identities=23% Similarity=0.203 Sum_probs=84.6
Q ss_pred CCCCCEEECcCCccCCc--cCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCC-ccccCCcccc
Q 042735 145 YLNLTFLDISDNNFFGE--IASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIP-KEFGKLNSLT 221 (667)
Q Consensus 145 l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~ 221 (667)
+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.+ +|..+.++++|+.|++++|.+.+..| ..+..+++|+
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 34455555555555433 24444555555555555555443 33445555555555555555544444 3445555555
Q ss_pred eeecccccccccCcccccCCCCCCeeeccCCcCCc-cchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCC
Q 042735 222 KLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSS-LIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN 300 (667)
Q Consensus 222 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n 300 (667)
.|++++|.+.+..|..++++++|++|++++|.+++ .+|..+..+++|+.|++++|++.+..|..++.+++|++|++++|
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 55555555554444455555555555555555544 23444455555555555555554444445555555555555555
Q ss_pred CCCCcCcccccCCcc
Q 042735 301 FLGREIPSQICSMEC 315 (667)
Q Consensus 301 ~l~~~ip~~~~~~~~ 315 (667)
.+.+..|..+..+..
T Consensus 508 ~l~~~~~~~~~~l~~ 522 (606)
T 3vq2_A 508 NLLFLDSSHYNQLYS 522 (606)
T ss_dssp CCSCEEGGGTTTCTT
T ss_pred cCCCcCHHHccCCCc
Confidence 554444444444333
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=311.37 Aligned_cols=242 Identities=31% Similarity=0.477 Sum_probs=185.4
Q ss_pred HHHHHHHcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC
Q 042735 414 VEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA 493 (667)
Q Consensus 414 ~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~ 493 (667)
.++..++++|+..+.||+|+||.||+|...++..||||++..... ...+.+.+|++++++++|||||++++++.+.
T Consensus 32 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 107 (321)
T 2qkw_B 32 VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESS----QGIEEFETEIETLSFCRHPHLVSLIGFCDER 107 (321)
T ss_dssp SCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCS----SHHHHHHHHHHGGGSCCCTTBCCEEEECCCT
T ss_pred HHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccCh----HHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence 344456789999999999999999999988899999998765322 2345799999999999999999999999999
Q ss_pred CceEEEEEecCCCChHHHhccccC----------------------------CcccccccCCeeecCCCceEEecccccc
Q 042735 494 RHSILIYEYLKRGSLATNLSNDAA----------------------------AEELDISSKNVLLDLEHKAHVSDFGIAK 545 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~~----------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~ 545 (667)
+..++||||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++
T Consensus 108 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~ 187 (321)
T 2qkw_B 108 NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISK 187 (321)
T ss_dssp TCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCE
T ss_pred CeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeeccccc
Confidence 999999999999999988754321 1134999999999999999999999998
Q ss_pred cccCCC--CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhh-------hhhhhcc
Q 042735 546 FLKPDS--SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV-------INMRLDE 610 (667)
Q Consensus 546 ~~~~~~--~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~-------~~~~~~~ 610 (667)
...... .......||+.|+||| |+.++|||||||++|||+||+.||............ .......
T Consensus 188 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (321)
T 2qkw_B 188 KGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQ 267 (321)
T ss_dssp ECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCS
T ss_pred ccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHH
Confidence 654322 1234457999999999 688999999999999999999998632211111000 0111122
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 611 MLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.+++...... .......+.+++.+||+.||++|||++|++++|......
T Consensus 268 ~~~~~~~~~~--~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~ 316 (321)
T 2qkw_B 268 IVDPNLADKI--RPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316 (321)
T ss_dssp SSSSSCTTCS--CHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred hcChhhcccc--CHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence 3333333222 234456788899999999999999999999999877544
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=312.93 Aligned_cols=245 Identities=28% Similarity=0.497 Sum_probs=188.2
Q ss_pred CCcCHHHHHHHHcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEE
Q 042735 409 GKFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488 (667)
Q Consensus 409 ~~~~~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g 488 (667)
..+++.++....++|+..+.||+|+||.||+|+..++..||||++...... .....|.+|++++++++|||||++++
T Consensus 18 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~ 94 (326)
T 3uim_A 18 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQ---GGELQFQTEVEMISMAVHRNLLRLRG 94 (326)
T ss_dssp EECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC--------CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred ceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCc---hHHHHHHHHHHHHHhccCCCccceEE
Confidence 457888999899999999999999999999999888999999998654321 11235889999999999999999999
Q ss_pred EEEeCCceEEEEEecCCCChHHHhcccc-------------------------------CCcccccccCCeeecCCCceE
Q 042735 489 FCSHARHSILIYEYLKRGSLATNLSNDA-------------------------------AAEELDISSKNVLLDLEHKAH 537 (667)
Q Consensus 489 ~~~~~~~~~lv~ey~~~g~L~~~l~~~~-------------------------------~~~~~dlk~~NiLld~~~~~k 537 (667)
++.+.+..++||||+++|+|.+.+.... ...|.||||+|||++.++.+|
T Consensus 95 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~k 174 (326)
T 3uim_A 95 FCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAV 174 (326)
T ss_dssp EECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEE
T ss_pred EEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEE
Confidence 9999999999999999999988775321 223459999999999999999
Q ss_pred EecccccccccCCCC-CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhh-------
Q 042735 538 VSDFGIAKFLKPDSS-NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV------- 603 (667)
Q Consensus 538 l~DFGla~~~~~~~~-~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~------- 603 (667)
|+|||+++....... ......||+.|+||| ++.++|||||||++|||+||+.||............
T Consensus 175 l~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 254 (326)
T 3uim_A 175 VGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKG 254 (326)
T ss_dssp ECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTT
T ss_pred eccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHH
Confidence 999999987654332 234456999999999 577999999999999999999998521100000000
Q ss_pred --hhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 604 --INMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 604 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.........+....... .......+.+++.+||+.+|++|||++||+++|...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~ 309 (326)
T 3uim_A 255 LLKEKKLEALVDVDLQGNY--KDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309 (326)
T ss_dssp TTSSCCSTTSSCTTCTTSC--CHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred HhhchhhhhhcChhhcccc--CHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence 01111222233333222 234556788999999999999999999999999864
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-35 Score=300.42 Aligned_cols=246 Identities=29% Similarity=0.450 Sum_probs=189.5
Q ss_pred CCcCHHHHHHHHcCCcCc------ceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCC
Q 042735 409 GKFDYVEIIRAINDFDAK------YCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN 482 (667)
Q Consensus 409 ~~~~~~~~~~~~~~f~~~------~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n 482 (667)
..|++.++..++++|+.. +.||+|+||.||+|.. ++..+|||++............+.|.+|++++++++|||
T Consensus 13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 91 (307)
T 2nru_A 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN 91 (307)
T ss_dssp EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence 468899999999999888 8899999999999987 577899999875433223334567999999999999999
Q ss_pred eeEEEEEEEeCCceEEEEEecCCCChHHHhcccc---------------------------CCcccccccCCeeecCCCc
Q 042735 483 IVKFYGFCSHARHSILIYEYLKRGSLATNLSNDA---------------------------AAEELDISSKNVLLDLEHK 535 (667)
Q Consensus 483 iv~~~g~~~~~~~~~lv~ey~~~g~L~~~l~~~~---------------------------~~~~~dlk~~NiLld~~~~ 535 (667)
|+++++++.+.+..++||||+++|+|.+.+.... ...|.||||+||+++.++.
T Consensus 92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~ 171 (307)
T 2nru_A 92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFT 171 (307)
T ss_dssp BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCC
T ss_pred eEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCCc
Confidence 9999999999999999999999999998875321 0113499999999999999
Q ss_pred eEEecccccccccCCCCC--cccccccccccCCC-----CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh---
Q 042735 536 AHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD-----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN--- 605 (667)
Q Consensus 536 ~kl~DFGla~~~~~~~~~--~~~~~Gt~~y~aPE-----~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~--- 605 (667)
+||+|||+++........ .....||+.|+||| ++.++|||||||++|||+||+.||..............
T Consensus 172 ~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~ 251 (307)
T 2nru_A 172 AKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIE 251 (307)
T ss_dssp EEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTTEECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHH
T ss_pred EEEeecccccccccccccccccccCCCcCcCChHHhcCCCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhh
Confidence 999999999876543221 23457999999999 57899999999999999999999864332211111100
Q ss_pred ---hhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 606 ---MRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 606 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
......++..+.... ......+.+++.+||+.+|++|||+.||+++|...
T Consensus 252 ~~~~~~~~~~~~~~~~~~---~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l 304 (307)
T 2nru_A 252 DEEKTIEDYIDKKMNDAD---STSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEM 304 (307)
T ss_dssp TTSCCHHHHSCSSCSCCC---HHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred hhhhhhhhhccccccccc---hHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence 011222333332222 23445677899999999999999999999998764
|
| >1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-36 Score=309.97 Aligned_cols=231 Identities=21% Similarity=0.323 Sum_probs=178.7
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|+.. +++.||+|++...... .....+.+.+|++++++++|||||++++++.+.+..++
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~l 82 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVII-AKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCF 82 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHH-HTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEE
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhh-hhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEE
Confidence 468999999999999999999874 5889999987542110 11224568899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||+++|+|..++.... ...|.||||+|||++.++.+||+|||+++.........
T Consensus 83 v~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~ 162 (337)
T 1o6l_A 83 VMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM 162 (337)
T ss_dssp EEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCB
T ss_pred EEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCCCcc
Confidence 999999999988775321 12245999999999999999999999998654444445
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
...+||+.|+||| |+.++|||||||++|||+||+.||..... .......... ...++...+ .
T Consensus 163 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~----~~~~~~i~~~--~~~~p~~~s------~ 230 (337)
T 1o6l_A 163 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH----ERLFELILME--EIRFPRTLS------P 230 (337)
T ss_dssp CCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHHC--CCCCCTTSC------H
T ss_pred cccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCH----HHHHHHHHcC--CCCCCCCCC------H
Confidence 6678999999999 57899999999999999999999853221 1111111111 122222222 2
Q ss_pred HHHHHHHhccccCCCCCC-----CHHHHHHHHHHhhhhhc
Q 042735 629 SIMEVAFSCLDVSPESRP-----TMQTITQQLLFSLVYFS 663 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~~ 663 (667)
.+.+++.+||+.||++|| +++||++|.||....|.
T Consensus 231 ~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h~~f~~~~~~ 270 (337)
T 1o6l_A 231 EAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQ 270 (337)
T ss_dssp HHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCCHH
T ss_pred HHHHHHHHHhhcCHHHhcCCCCCCHHHHHcCCCcCCCCHH
Confidence 456788899999999999 99999999999876554
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=324.80 Aligned_cols=316 Identities=19% Similarity=0.152 Sum_probs=263.2
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEc
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLAL 81 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L 81 (667)
.+++.|+|++|.|+++.|..|.++++|++|+|++|++.+..|.+|+++++|++|+|++|++++..|..++. .+|++|+|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 36899999999999999999999999999999999999989999999999999999999999888888887 56999999
Q ss_pred ccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCC--EEECcCCccC
Q 042735 82 ENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLT--FLDISDNNFF 159 (667)
Q Consensus 82 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~--~L~L~~n~l~ 159 (667)
++|.+++..+..+..+.+|+.|++++|.+.+..+..+..+++|+.|+|++|.+++..+..++.+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999987788899999999999999999985544555699999999999999988899999999999 8999999988
Q ss_pred CccCccCCCC---------------------------------------------------CCCCEEEccCCcCCCCcCc
Q 042735 160 GEIASNWGKC---------------------------------------------------PKLSTLNVSMNNITRSIPL 188 (667)
Q Consensus 160 ~~~~~~~~~l---------------------------------------------------~~L~~L~L~~n~l~~~~p~ 188 (667)
+..|..+... .+|+.|++++|.+++..+.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 7766554321 1567778888888777777
Q ss_pred cccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchh-hhhcccC
Q 042735 189 EIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPE-SLGNLLK 267 (667)
Q Consensus 189 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~ 267 (667)
.|.++++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+.+|. .+..+++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 7888888888888888876 5677788888888888888888877777888888888888888887755544 4777888
Q ss_pred CCeecCCCccCcccc--chhhhcCCCCCEEECcCCCCCCcCcccccCCcccccc
Q 042735 268 LHYLDLSKYQFIQEL--PKELGKLVQLSELELSHNFLGREIPSQICSMECCEVF 319 (667)
Q Consensus 268 L~~L~ls~n~~~~~~--p~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~~~~ 319 (667)
|+.|++++|.+.+.. |..+..+++|++|++++|.+.+..|..+..+..+..+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence 888888888876655 6677888888888888888777667666665555444
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=327.88 Aligned_cols=315 Identities=20% Similarity=0.185 Sum_probs=229.6
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEc
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLAL 81 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L 81 (667)
++|+.|+|++|.++++.+..|.++++|++|+|++|++++..|.+|+++++|++|+|++|.+++..|..++. .+|++|+|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 35677777777777666666777777777777777777666667777777777777777776666666655 34777777
Q ss_pred ccccccccCCccccCCCCccEEEeeCccccc-ccCccCCCCCCCcEEEccCCccccccchhhhcC---------------
Q 042735 82 ENNHFTGNLRHNICRNGALERVIVGGNHFRG-PIPKCLRNCPNLVRISLEGNNMRGTISEAFGIY--------------- 145 (667)
Q Consensus 82 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l--------------- 145 (667)
++|.+.+..+..+.++.+|+.|++++|.+.+ .+|..+.++++|++|+|++|++++..+..++.+
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 7777766655666667777777777777664 456667777777777777666655443322211
Q ss_pred --------------------------------------------------------------------------------
Q 042735 146 -------------------------------------------------------------------------------- 145 (667)
Q Consensus 146 -------------------------------------------------------------------------------- 145 (667)
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence
Q ss_pred -----------------------------------CCCCEEECcCCccCCccC--------------------ccCCCCC
Q 042735 146 -----------------------------------LNLTFLDISDNNFFGEIA--------------------SNWGKCP 170 (667)
Q Consensus 146 -----------------------------------~~L~~L~L~~n~l~~~~~--------------------~~~~~l~ 170 (667)
++|+.|++++|.+ +.+| ..+..++
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~ 350 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALP 350 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCT
T ss_pred ccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCC
Confidence 2233333333333 2222 1234567
Q ss_pred CCCEEEccCCcCCCC--cCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCc-ccccCCCCCCee
Q 042735 171 KLSTLNVSMNNITRS--IPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLP-SEIGSLTKLEFL 247 (667)
Q Consensus 171 ~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L 247 (667)
+|+.|++++|.+++. .|..+..+++|++|++++|.+.+ +|..|..+++|+.|++++|.+.+..| ..+..+++|++|
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 788888888888765 37788899999999999998875 55788899999999999999988777 678899999999
Q ss_pred eccCCcCCccchhhhhcccCCCeecCCCccCcc-ccchhhhcCCCCCEEECcCCCCCCcCcccccCCcccccc
Q 042735 248 NLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQ-ELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEVF 319 (667)
Q Consensus 248 ~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~-~~p~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~~~~ 319 (667)
++++|.+++..|..+.++++|+.|++++|++.+ .+|..++.+++|++|++++|.+.+..|..+..+..+..+
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 502 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEE
Confidence 999999998888889999999999999998877 478888999999999999999988888777777666554
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-36 Score=309.23 Aligned_cols=226 Identities=22% Similarity=0.327 Sum_probs=176.3
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|...+.||+|+||.||+|+. .+++.||||++..... .....+.+.+|++++++++|||||++++++.+.+..++
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~l 91 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQL--NPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYL 91 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGS--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEE
Confidence 46789999999999999999986 6788999999864322 22345678999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||+++|+|.+.+.... ...|.||||+|||++.++.+||+|||+++...... ..
T Consensus 92 v~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~~ 170 (328)
T 3fe3_A 92 IMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG-KL 170 (328)
T ss_dssp EECCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSC-GG
T ss_pred EEECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCC-cc
Confidence 999999999988774321 12245999999999999999999999998765432 34
Q ss_pred ccccccccccCCC------C-CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 555 SALVGTYRYVAPD------Y-RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~-~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
...+||+.|+||| | +.++||||+||++|||+||+.||..... .......... ....|...+
T Consensus 171 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~----~~~~~~i~~~--~~~~p~~~s------ 238 (328)
T 3fe3_A 171 DAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL----KELRERVLRG--KYRIPFYMS------ 238 (328)
T ss_dssp GTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHHC--CCCCCTTSC------
T ss_pred ccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCH----HHHHHHHHhC--CCCCCCCCC------
Confidence 5678999999999 3 3689999999999999999999864321 1111111111 112222111
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..+.+++.+||+.||.+|||++|++++.|+...
T Consensus 239 ~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~~ 271 (328)
T 3fe3_A 239 TDCENLLKRFLVLNPIKRGTLEQIMKDRWINAG 271 (328)
T ss_dssp HHHHHHHHHHCCSSTTTSCCHHHHTTCTTTTTT
T ss_pred HHHHHHHHHHCCCChhHCcCHHHHhcCHhhcCC
Confidence 245678889999999999999999999998653
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=321.89 Aligned_cols=317 Identities=21% Similarity=0.210 Sum_probs=221.4
Q ss_pred CCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCC--eeeccccccceeCCCCCccc-----
Q 042735 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLR--YLFLFENNLSGSIPPSVGNL----- 74 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~--~L~L~~n~l~~~~p~~~~~~----- 74 (667)
+++|++|+|++|.++++.+..+..+++|++|+|++|++++..|..|+.+++|+ .|++++|.+++..|..+...
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L 207 (606)
T 3t6q_A 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred CCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccc
Confidence 34555555555555543333333455555555555555555555555566655 55666666555554443321
Q ss_pred -----------------------------------------------ccCEEEcccccccccCCccccCCCCccEEEeeC
Q 042735 75 -----------------------------------------------MLTVLALENNHFTGNLRHNICRNGALERVIVGG 107 (667)
Q Consensus 75 -----------------------------------------------~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 107 (667)
.|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 208 ~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 287 (606)
T 3t6q_A 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287 (606)
T ss_dssp ECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT
T ss_pred ccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccC
Confidence 355566666666665566677778888888888
Q ss_pred cccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCc-cCCCCCCCCEEEccCCcCCCCc
Q 042735 108 NHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIAS-NWGKCPKLSTLNVSMNNITRSI 186 (667)
Q Consensus 108 n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~ 186 (667)
|.++ .+|..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+.++. .+..+++|+.|++++|.+.+..
T Consensus 288 n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 288 THLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp SCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred CccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence 8887 5677788888888888888888877777888888888888888887766654 4778888888888888887655
Q ss_pred --CccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcc-cccCCCCCCeeeccCCcCCccchhhhh
Q 042735 187 --PLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPS-EIGSLTKLEFLNLSTNRFSSLIPESLG 263 (667)
Q Consensus 187 --p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 263 (667)
+..+.++++|++|++++|.+.+..|..|..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+++..|..+.
T Consensus 367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 446 (606)
T 3t6q_A 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446 (606)
T ss_dssp ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence 66777888888888888888777777788888888888888887766554 377778888888888888777777777
Q ss_pred cccCCCeecCCCccCccc---cchhhhcCCCCCEEECcCCCCCCcCcccccCCcccccc
Q 042735 264 NLLKLHYLDLSKYQFIQE---LPKELGKLVQLSELELSHNFLGREIPSQICSMECCEVF 319 (667)
Q Consensus 264 ~l~~L~~L~ls~n~~~~~---~p~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~~~~ 319 (667)
.+++|+.|++++|++.+. .+..+..+++|++|++++|.+.+..|..+..++.+..+
T Consensus 447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 778888888888777652 23457777778888888877776666666665555443
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=307.70 Aligned_cols=233 Identities=24% Similarity=0.305 Sum_probs=171.2
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc----e
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH----S 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~----~ 496 (667)
++|+..+.||+|+||.||+|+.. ++.||||++... ......+.+|+.++++++|||||++++++.+... .
T Consensus 24 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 97 (322)
T 3soc_A 24 MPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQ-----DKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDL 97 (322)
T ss_dssp EEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGG-----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred hhchhhheecccCceEEEEEEEC-CCEEEEEEeecC-----chHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceE
Confidence 67889999999999999999876 688999998532 2233456779999999999999999999987543 6
Q ss_pred EEEEEecCCCChHHHhcccc---------------------------------CCcccccccCCeeecCCCceEEecccc
Q 042735 497 ILIYEYLKRGSLATNLSNDA---------------------------------AAEELDISSKNVLLDLEHKAHVSDFGI 543 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~---------------------------------~~~~~dlk~~NiLld~~~~~kl~DFGl 543 (667)
++||||+++|+|.+++.... ...|.||||+|||++.++.+||+|||+
T Consensus 98 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~ 177 (322)
T 3soc_A 98 WLITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGL 177 (322)
T ss_dssp EEEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred EEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCc
Confidence 99999999999988764321 233559999999999999999999999
Q ss_pred cccccCCCC--CcccccccccccCCCC-----------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhh-------
Q 042735 544 AKFLKPDSS--NWSALVGTYRYVAPDY-----------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV------- 603 (667)
Q Consensus 544 a~~~~~~~~--~~~~~~Gt~~y~aPE~-----------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~------- 603 (667)
++....... ......||+.|+|||. +.++|||||||++|||+||+.||.........+..
T Consensus 178 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~ 257 (322)
T 3soc_A 178 ALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHP 257 (322)
T ss_dssp CEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSC
T ss_pred ccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCC
Confidence 987654332 2334679999999993 23579999999999999999998643221111110
Q ss_pred -----hhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 604 -----INMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 604 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..........+.++... ........+.+++.+||+.||++|||++||+++|.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~ 318 (322)
T 3soc_A 258 SLEDMQEVVVHKKKRPVLRDYW-QKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQR 318 (322)
T ss_dssp CHHHHHHHHTTSCCCCCCCGGG-GSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred chhhhhhhhhcccCCCCccccc-cccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 00011111111111111 111234567889999999999999999999999887543
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=318.63 Aligned_cols=231 Identities=19% Similarity=0.287 Sum_probs=175.9
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|.. .++..+|+|++..... .....+.+.+|++++++++|||||++++++.+.+..++
T Consensus 10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~--~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~l 87 (444)
T 3soa_A 10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKL--SARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYL 87 (444)
T ss_dssp HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSC--HHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEE
T ss_pred cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccC--CHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEE
Confidence 46789999999999999999975 5688899999875432 23345679999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeec---CCCceEEecccccccccCCC
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLD---LEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld---~~~~~kl~DFGla~~~~~~~ 551 (667)
||||+++|+|.+.+.... ...|.||||+|||++ .++.+||+|||+++......
T Consensus 88 v~E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~ 167 (444)
T 3soa_A 88 IFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQ 167 (444)
T ss_dssp EECCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTC
T ss_pred EEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCC
Confidence 999999999988765322 122459999999998 56889999999998776554
Q ss_pred CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
......+||+.|+||| |+.++||||+||++|||++|+.||..... ............+ .+ .+....
T Consensus 168 ~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~----~~~~~~i~~~~~~--~~--~~~~~~ 239 (444)
T 3soa_A 168 QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQ----HRLYQQIKAGAYD--FP--SPEWDT 239 (444)
T ss_dssp CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSH----HHHHHHHHHTCCC--CC--TTTTTT
T ss_pred ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccH----HHHHHHHHhCCCC--CC--cccccc
Confidence 4455678999999999 67899999999999999999999853221 1111111111111 11 111111
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
....+.+++.+||+.||++|||++|++++.|+...
T Consensus 240 ~s~~~~~li~~~L~~dP~~Rpta~e~L~hp~~~~~ 274 (444)
T 3soa_A 240 VTPEAKDLINKMLTINPSKRITAAEALKHPWISHR 274 (444)
T ss_dssp SCHHHHHHHHHHSCSSTTTSCCHHHHHHSCTTHHH
T ss_pred CCHHHHHHHHHHcCCChhHCCCHHHHhcCccccCC
Confidence 12346678889999999999999999999988643
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-35 Score=335.01 Aligned_cols=308 Identities=20% Similarity=0.243 Sum_probs=217.4
Q ss_pred CCCCCcEEeccCCcCcC-----------------CCCcccc--CCCCCCEEEccCccccccCCccccCCCCCCeeecccc
Q 042735 1 NLTNLRELHLRDNYLTG-----------------LIPTETW--NLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61 (667)
Q Consensus 1 ~L~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 61 (667)
+|++|+.|+|++|.|++ .+|..+. ++++|++|+|++|++.+.+|..|+++++|++|+|++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 47899999999999998 2788877 9999999999999999999999999999999999999
Q ss_pred c-cce-eCCCCCccc--------ccCEEEcccccccccCCc--cccCCCCccEEEeeCcccccccCccCCCCCCCcEEEc
Q 042735 62 N-LSG-SIPPSVGNL--------MLTVLALENNHFTGNLRH--NICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISL 129 (667)
Q Consensus 62 ~-l~~-~~p~~~~~~--------~L~~L~L~~n~l~~~~~~--~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L 129 (667)
+ +++ .+|..++.+ +|+.|+|++|.++ .+|. .+..+++|+.|++++|.++ .+| .+.++++|+.|+|
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 8 887 788766553 6999999999998 7887 8999999999999999998 777 8899999999999
Q ss_pred cCCccccccchhhhcCCC-CCEEECcCCccCCccCccCCCCCC--CCEEEccCCcCCCCcCcc---cc--CCCCcCeeec
Q 042735 130 EGNNMRGTISEAFGIYLN-LTFLDISDNNFFGEIASNWGKCPK--LSTLNVSMNNITRSIPLE---IG--NLSTLNEFDL 201 (667)
Q Consensus 130 ~~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~p~~---~~--~l~~L~~L~L 201 (667)
++|.++ .+|..+..+++ |+.|+|++|.+. .+|..+..++. |+.|+|++|.+.+.+|.. +. .+++|+.|+|
T Consensus 603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred cCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 999998 77778888888 999999999887 67777766543 777777777776654421 11 2235555666
Q ss_pred cCCcccccCCcc-ccCCcccceeecccccccccCcccccCC--------CCCCeeeccCCcCCccchhhhh--cccCCCe
Q 042735 202 SLNHIVGKIPKE-FGKLNSLTKLILRGNQLIGHLPSEIGSL--------TKLEFLNLSTNRFSSLIPESLG--NLLKLHY 270 (667)
Q Consensus 202 ~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l--------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~ 270 (667)
++|.+.. +|.. +..+++|+.|+|++|.+. .+|..+... ++|+.|+|++|+++ .+|..+. .+++|+.
T Consensus 681 s~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~ 757 (876)
T 4ecn_A 681 SYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSN 757 (876)
T ss_dssp CSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCE
T ss_pred cCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCE
Confidence 6655552 3332 235555555555555554 333322221 15555555555555 2344444 5555555
Q ss_pred ecCCCccCccccchhhhcCCCCCEEECcC------CCCCCcCcccccCCcccc
Q 042735 271 LDLSKYQFIQELPKELGKLVQLSELELSH------NFLGREIPSQICSMECCE 317 (667)
Q Consensus 271 L~ls~n~~~~~~p~~l~~l~~L~~L~l~~------n~l~~~ip~~~~~~~~~~ 317 (667)
|+|++|++.+ +|..++.+++|+.|++++ |.+.+.+|..+..+..+.
T Consensus 758 L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 758 MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp EECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred EEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence 5555555444 455555555555555543 445555555554444443
|
| >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=303.10 Aligned_cols=233 Identities=21% Similarity=0.330 Sum_probs=171.5
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|+..+.||+|+||.||+|+..+++.+|||++...... ....+.+.+|++++++++|||||++++++.+.+..++||
T Consensus 21 ~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 98 (311)
T 3niz_A 21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAED--EGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF 98 (311)
T ss_dssp CEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC--------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEE
T ss_pred hhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEeccccc--chhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEE
Confidence 678889999999999999999988999999998653221 223457889999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 501 EYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
||+++ +|.+.+.... ...|.||||+|||++.++.+||+|||+++.........+
T Consensus 99 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~ 177 (311)
T 3niz_A 99 EFMEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYT 177 (311)
T ss_dssp ECCSE-EHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC---
T ss_pred cCCCC-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEccCcCceecCCCccccc
Confidence 99995 7766654321 112349999999999999999999999987654444445
Q ss_pred cccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCC----------
Q 042735 556 ALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP---------- 618 (667)
Q Consensus 556 ~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 618 (667)
...||+.|+||| |+.++||||+||++|||+||+.||............. .......+.
T Consensus 178 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~~~~ 252 (311)
T 3niz_A 178 HEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIF-----SILGTPNPREWPQVQELPL 252 (311)
T ss_dssp CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHH-----HHHCCCCTTTSGGGTTSHH
T ss_pred CCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHH-----HHHCCCChHHhhhhhccch
Confidence 568999999999 4678999999999999999999986432211000000 000000000
Q ss_pred ----------CCCc---hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 619 ----------PSPD---VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 619 ----------~~~~---~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
..+. ......++.+++.+||+.||++|||++|++++.||....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~ 308 (311)
T 3niz_A 253 WKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPYFKDLD 308 (311)
T ss_dssp HHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTSC
T ss_pred hhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcCcccccCC
Confidence 0000 000113567888999999999999999999999987543
|
| >4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-36 Score=315.41 Aligned_cols=237 Identities=23% Similarity=0.336 Sum_probs=177.0
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~ 497 (667)
.++|+..+.||+|+||+||+|+.. +++.+|||++.+..... ....+.+.+|..++.++ +|||||++++++.+.+..+
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~-~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 129 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVND-DEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLF 129 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC-----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccC-HHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEE
Confidence 468999999999999999999875 47789999986532211 12234578899999887 7999999999999999999
Q ss_pred EEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 498 LIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
+||||+++|+|..++.... ...|.||||+|||+|.++.+||+|||+|+........
T Consensus 130 lV~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~ 209 (396)
T 4dc2_A 130 FVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT 209 (396)
T ss_dssp EEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCC
T ss_pred EEEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCCCEEEeecceeeecccCCCc
Confidence 9999999999988775421 1224599999999999999999999999864444444
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC-Chhhhhhhhcccc--CCCCCCCCCchH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP-SPSVINMRLDEML--DPRLPPPSPDVQ 624 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~ 624 (667)
....+||+.|+||| |+.++|||||||++|||+||+.||........ ...........+. ...+|...+
T Consensus 210 ~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~s--- 286 (396)
T 4dc2_A 210 TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLS--- 286 (396)
T ss_dssp BCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCCCTTSC---
T ss_pred cccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCCCCcCC---
Confidence 56689999999999 67899999999999999999999863221100 0000000011111 122222221
Q ss_pred HHHHHHHHHHHhccccCCCCCCCH------HHHHHHHHHhhhhhc
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTM------QTITQQLLFSLVYFS 663 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~------~ev~~~l~~~~~~~~ 663 (667)
..+.+++.+||+.||++||++ +||+++.||..+.|+
T Consensus 287 ---~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~Hpff~~i~w~ 328 (396)
T 4dc2_A 287 ---VKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWD 328 (396)
T ss_dssp ---HHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHSTTTTTCCHH
T ss_pred ---HHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcCccccCCCHH
Confidence 245678889999999999984 899999999877654
|
| >3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-36 Score=313.07 Aligned_cols=232 Identities=21% Similarity=0.312 Sum_probs=173.3
Q ss_pred HHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCce
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~ 496 (667)
..++|+..+.||+|+||.||+|+.. +++.||||++..... ......+.+.+|++++..+ +|||||++++++.+.+..
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~-~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~ 99 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVI-LQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRL 99 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHH-HHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHh-cchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEE
Confidence 3578999999999999999999864 578999998864211 1112345688999999988 699999999999999999
Q ss_pred EEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
|+||||+++|+|..++.... ...|.||||+|||++.++.+||+|||+|+.......
T Consensus 100 ~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~~ 179 (353)
T 3txo_A 100 FFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGV 179 (353)
T ss_dssp EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC---
T ss_pred EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEccccceeecccCCc
Confidence 99999999999988775321 123459999999999999999999999986544444
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....+||+.|+||| |+.++|||||||++|||+||+.||..... .......... ....+...+
T Consensus 180 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~----~~~~~~i~~~--~~~~p~~~~----- 248 (353)
T 3txo_A 180 TTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENE----DDLFEAILND--EVVYPTWLH----- 248 (353)
T ss_dssp ------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHHC--CCCCCTTSC-----
T ss_pred cccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCH----HHHHHHHHcC--CCCCCCCCC-----
Confidence 455678999999999 78999999999999999999999863321 1111111111 112222111
Q ss_pred HHHHHHHHHhccccCCCCCCCH------HHHHHHHHHhhhhhc
Q 042735 627 LISIMEVAFSCLDVSPESRPTM------QTITQQLLFSLVYFS 663 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~------~ev~~~l~~~~~~~~ 663 (667)
..+.+++.+||+.+|++||++ +||++|.||....|.
T Consensus 249 -~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~hp~f~~~~w~ 290 (353)
T 3txo_A 249 -EDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFFKEIDWA 290 (353)
T ss_dssp -HHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTSGGGTTCCHH
T ss_pred -HHHHHHHHHHhhhCHHHccCCcccCCHHHHhhCCcccCCCHH
Confidence 245678889999999999999 999999999876654
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-35 Score=299.88 Aligned_cols=228 Identities=24% Similarity=0.411 Sum_probs=172.2
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|... ++..+|+|++... .....+.|.+|++++++++|||||++++++.+++..++|
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~----~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 85 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF----DEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFI 85 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCC----CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccC----CHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEE
Confidence 57888899999999999999874 5788999987542 234567899999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC-
Q 042735 500 YEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN- 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~- 553 (667)
|||+++|+|.+.+..... ..|.||||+||+++.++.+||+|||+++........
T Consensus 86 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~ 165 (310)
T 3s95_A 86 TEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQP 165 (310)
T ss_dssp EECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC------
T ss_pred EEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceecccccccc
Confidence 999999999988864211 123499999999999999999999999876432211
Q ss_pred -------------cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCC
Q 042735 554 -------------WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP 614 (667)
Q Consensus 554 -------------~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~ 614 (667)
....+||+.|+||| |+.++|||||||++|||++|..|+............ ......+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~---~~~~~~~~ 242 (310)
T 3s95_A 166 EGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGL---NVRGFLDR 242 (310)
T ss_dssp --------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSB---CHHHHHHH
T ss_pred cccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhh---hhhccccc
Confidence 12467999999999 678999999999999999999987532211110000 00111111
Q ss_pred CCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 615 RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
..+...+. .+.+++.+||+.||++|||++|+++.|......
T Consensus 243 ~~~~~~~~------~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~ 283 (310)
T 3s95_A 243 YCPPNCPP------SFFPITVRCCDLDPEKRPSFVKLEHWLETLRMH 283 (310)
T ss_dssp TCCTTCCT------THHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCH------HHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 12222222 356788899999999999999999988765443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=313.34 Aligned_cols=308 Identities=21% Similarity=0.180 Sum_probs=251.8
Q ss_pred cEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeC-CCCCcc-cccCEEEccc
Q 042735 6 RELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSI-PPSVGN-LMLTVLALEN 83 (667)
Q Consensus 6 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~-~~L~~L~L~~ 83 (667)
+.++.+++.++.+ |. + .++|++|+|++|+|++..|..|.++++|++|+|++|.+.+.+ |..+.. .+|++|+|++
T Consensus 13 ~~~~c~~~~l~~l-p~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQV-PE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSSC-CC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcccC-CC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4678888888764 54 3 389999999999999988999999999999999999997655 455666 5699999999
Q ss_pred ccccccCCccccCCCCccEEEeeCcccccccCcc--CCCCCCCcEEEccCCccccccchh-hhcCCCCCEEECcCCccCC
Q 042735 84 NHFTGNLRHNICRNGALERVIVGGNHFRGPIPKC--LRNCPNLVRISLEGNNMRGTISEA-FGIYLNLTFLDISDNNFFG 160 (667)
Q Consensus 84 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~--l~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~ 160 (667)
|.+++..|..+.++.+|+.|++++|.+++..|.. +.++++|++|+|++|.+++..|.. +..+++|++|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 9999998999999999999999999999866555 999999999999999999887766 8999999999999999988
Q ss_pred ccCccCCCC----------------------------------CCCCEEEccCCcCCCCcCccccC--------------
Q 042735 161 EIASNWGKC----------------------------------PKLSTLNVSMNNITRSIPLEIGN-------------- 192 (667)
Q Consensus 161 ~~~~~~~~l----------------------------------~~L~~L~L~~n~l~~~~p~~~~~-------------- 192 (667)
..+..+..+ ++|+.|++++|.+.+..|..+..
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 877766544 56778888888776544433221
Q ss_pred -------------------------CCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCee
Q 042735 193 -------------------------LSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFL 247 (667)
Q Consensus 193 -------------------------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 247 (667)
.++|+.|++++|.+.+..|..|+.+++|+.|++++|.+.+..|..|+++++|++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 328 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEE
Confidence 2567888888888887778888888888888888888887777788888888888
Q ss_pred eccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCcCcccccCCcccc
Q 042735 248 NLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECCE 317 (667)
Q Consensus 248 ~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~~ 317 (667)
+|++|.+++..|..+.++++|+.|++++|++.+..|..+..+++|++|++++|.+.+..+..+..++.+.
T Consensus 329 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp ECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence 8888888877788888888888888888888777788888888888888888888654444444444443
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=319.14 Aligned_cols=307 Identities=20% Similarity=0.221 Sum_probs=213.7
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcc
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALE 82 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~ 82 (667)
++|+.|+|++|.++++.|..|.++++|++|+|++|++++..|..|+++++|++|+|++|+++ .+|.. ...+|++|+|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH-PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC-CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc-ccCCccEEecc
Confidence 47899999999999888888999999999999999999888899999999999999999998 46665 55679999999
Q ss_pred cccccc-cCCccccCCCCccEEEeeCcccccccCccCCCCCCC--cEEEccCCcc--ccccchhhhcC------------
Q 042735 83 NNHFTG-NLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNL--VRISLEGNNM--RGTISEAFGIY------------ 145 (667)
Q Consensus 83 ~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L--~~L~L~~n~~--~~~~~~~~~~l------------ 145 (667)
+|.+++ .+|..+..+.+|+.|++++|.+++ ..+..+++| +.|++++|.+ .+..|..+..+
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred CCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 999987 467889999999999999988875 345556666 7777777766 44444444332
Q ss_pred -----------------------------------------------------------------------CCCCEEECc
Q 042735 146 -----------------------------------------------------------------------LNLTFLDIS 154 (667)
Q Consensus 146 -----------------------------------------------------------------------~~L~~L~L~ 154 (667)
++|++|+++
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 255 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEee
Confidence 267777777
Q ss_pred CCccCCccCccC-----CCCCCCCEEEccCCcCCCCcC-c------------------------c-ccCCCCcCeeeccC
Q 042735 155 DNNFFGEIASNW-----GKCPKLSTLNVSMNNITRSIP-L------------------------E-IGNLSTLNEFDLSL 203 (667)
Q Consensus 155 ~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~p-~------------------------~-~~~l~~L~~L~L~~ 203 (667)
+|.+.+.+|..+ ..+++|+.+++++|.+ .+| . . +..+++|++|++++
T Consensus 256 ~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333 (520)
T ss_dssp EEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred cccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeEC
Confidence 777777777766 4554444444444443 122 0 0 14566677777777
Q ss_pred CcccccCCccccCCcccceeecccccccc--cCcccccCCCCCCeeeccCCcCCccchh-hhhcccCCCeecCCCccCcc
Q 042735 204 NHIVGKIPKEFGKLNSLTKLILRGNQLIG--HLPSEIGSLTKLEFLNLSTNRFSSLIPE-SLGNLLKLHYLDLSKYQFIQ 280 (667)
Q Consensus 204 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~ls~n~~~~ 280 (667)
|.+.+..|..++.+++|+.|++++|++.+ .+|..++.+++|++|++++|.+++.+|. .+..+++|+.|++++|++.+
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 77766666666777777777777776664 3445566677777777777777663443 35566666777777666666
Q ss_pred ccchhhhcCCCCCEEECcCCCCCCcCcccccCCcccccc
Q 042735 281 ELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEVF 319 (667)
Q Consensus 281 ~~p~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~~~~ 319 (667)
.+|..+. ++|+.|++++|.+. .+|..+..+..+..+
T Consensus 414 ~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 414 TIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp GGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred chhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 5555443 56666666666665 566555554444433
|
| >3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=306.88 Aligned_cols=231 Identities=21% Similarity=0.313 Sum_probs=166.9
Q ss_pred HcCCcCcceeecccCeEEEEEEe----CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~----~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
.++|+..+.||+|+||.||+|+. .+++.+|+|++..............+.+|++++++++|||||++++++.+.+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 36788999999999999999986 46889999998764322222334568899999999999999999999999999
Q ss_pred eEEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
.++||||+++|+|.+.+.... ...|.||||+|||++.++.+||+|||+++......
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~ 175 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDG 175 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTSCEEECCCSCC-------
T ss_pred EEEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCCcEEEEeCCcccccccCC
Confidence 999999999999988775321 12245999999999999999999999998654433
Q ss_pred CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
......+||+.|+||| |+.++|||||||++|||++|+.||..... .......... ...++...+
T Consensus 176 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~----~~~~~~i~~~--~~~~p~~~~---- 245 (327)
T 3a62_A 176 TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENR----KKTIDKILKC--KLNLPPYLT---- 245 (327)
T ss_dssp ---CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH----HHHHHHHHHT--CCCCCTTSC----
T ss_pred ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCH----HHHHHHHHhC--CCCCCCCCC----
Confidence 3345578999999999 57789999999999999999999863221 1111111111 112222221
Q ss_pred HHHHHHHHHHhccccCCCCCC-----CHHHHHHHHHHhhhhh
Q 042735 626 KLISIMEVAFSCLDVSPESRP-----TMQTITQQLLFSLVYF 662 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~ 662 (667)
..+.+++.+||+.+|++|| +++|+++|.||....|
T Consensus 246 --~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~hp~f~~~~~ 285 (327)
T 3a62_A 246 --QEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINW 285 (327)
T ss_dssp --HHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHSGGGSSCCH
T ss_pred --HHHHHHHHHHHhcCHhhccCCCCCCHHHHHcCCcccCCCH
Confidence 2456788899999999999 8999999999976544
|
| >2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=310.08 Aligned_cols=231 Identities=18% Similarity=0.225 Sum_probs=175.5
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCch--HHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQ--IADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
+.|+..+.||+|+||.||+|+.. ++..+|||.+........ ....+.+.+|+.++++++|||||++++++.+....+
T Consensus 12 ~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~ 91 (361)
T 2yab_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVV 91 (361)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred hceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEE
Confidence 56888999999999999999875 588899998865432111 112457899999999999999999999999999999
Q ss_pred EEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCC----ceEEecccccccccC
Q 042735 498 LIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEH----KAHVSDFGIAKFLKP 549 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~----~~kl~DFGla~~~~~ 549 (667)
+||||+++|+|.+++..... ..|.||||+|||++.++ .+||+|||+++....
T Consensus 92 lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~ 171 (361)
T 2yab_A 92 LILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED 171 (361)
T ss_dssp EEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCT
T ss_pred EEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCC
Confidence 99999999999998864321 12349999999998777 799999999987654
Q ss_pred CCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 550 DSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
.. .....+||+.|+||| |+.++|||||||++|||++|+.||..... .... ..+.......+....
T Consensus 172 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~----~~~~----~~i~~~~~~~~~~~~ 242 (361)
T 2yab_A 172 GV-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK----QETL----ANITAVSYDFDEEFF 242 (361)
T ss_dssp TC-CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH----HHHH----HHHHTTCCCCCHHHH
T ss_pred CC-ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH----HHHH----HHHHhcCCCCCchhc
Confidence 32 234578999999999 67889999999999999999999853221 0111 111111111111101
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
......+.+++.+||..||++|||++|++++.|+...
T Consensus 243 ~~~s~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~ 279 (361)
T 2yab_A 243 SQTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPV 279 (361)
T ss_dssp TTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTSCS
T ss_pred cCCCHHHHHHHHHHCCCChhHCcCHHHHhcCcCcCCC
Confidence 1112346688889999999999999999999998643
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-35 Score=307.40 Aligned_cols=227 Identities=24% Similarity=0.382 Sum_probs=173.5
Q ss_pred cCCcCcceeecccCeEEEEEEeC--------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP--------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCS 491 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~--------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~ 491 (667)
++|...+.||+|+||.||+|+.. ++..||||++.... .....+.+.+|+++++++ +|||||++++++.
T Consensus 81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~ 157 (370)
T 2psq_A 81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA---TEKDLSDLVSEMEMMKMIGKHKNIINLLGACT 157 (370)
T ss_dssp GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC---BHHHHHHHHHHHHHHHHSCCCTTBCCEEEEEC
T ss_pred HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc---CHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEc
Confidence 67888999999999999999752 34569999986532 234456799999999999 8999999999999
Q ss_pred eCCceEEEEEecCCCChHHHhccccC----------------------------------------CcccccccCCeeec
Q 042735 492 HARHSILIYEYLKRGSLATNLSNDAA----------------------------------------AEELDISSKNVLLD 531 (667)
Q Consensus 492 ~~~~~~lv~ey~~~g~L~~~l~~~~~----------------------------------------~~~~dlk~~NiLld 531 (667)
+.+..|+||||+++|+|.+++..... ..|.||||+|||++
T Consensus 158 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~ 237 (370)
T 2psq_A 158 QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVT 237 (370)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhEEEC
Confidence 99999999999999999998864320 11339999999999
Q ss_pred CCCceEEecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChh
Q 042735 532 LEHKAHVSDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPS 602 (667)
Q Consensus 532 ~~~~~kl~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~ 602 (667)
.++.+||+|||+++....... ......||+.|+||| |+.++|||||||++|||+| |+.||..... ..
T Consensus 238 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~----~~ 313 (370)
T 2psq_A 238 ENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV----EE 313 (370)
T ss_dssp TTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG----GG
T ss_pred CCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCH----HH
Confidence 999999999999986654322 223456789999999 6789999999999999999 9999864321 11
Q ss_pred hhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 603 VINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
... .+.....+..+... ...+.+++.+||+.+|++|||+.|++++|......
T Consensus 314 ~~~-~~~~~~~~~~~~~~------~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~ 365 (370)
T 2psq_A 314 LFK-LLKEGHRMDKPANC------TNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTL 365 (370)
T ss_dssp HHH-HHHTTCCCCCCTTS------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHH-HHhcCCCCCCCCCC------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 111 11111112222211 12466788899999999999999999999876543
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=307.70 Aligned_cols=229 Identities=21% Similarity=0.294 Sum_probs=175.6
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|... ++..+|||++...... ....+.+.+|++++++++|||||++++++.+.+..++
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~--~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~l 105 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS--ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL 105 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCC--HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence 467899999999999999999864 5789999998654332 2345678999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCC---CceEEecccccccccCCC
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLE---HKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~---~~~kl~DFGla~~~~~~~ 551 (667)
||||+++|+|.+.+.... ...|.||||+|||++.+ +.+||+|||+++......
T Consensus 106 v~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~ 185 (362)
T 2bdw_A 106 VFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSE 185 (362)
T ss_dssp EECCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCC
T ss_pred EEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCc
Confidence 999999999988775432 12245999999999865 459999999998765332
Q ss_pred CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
.....+||+.|+||| |+.++|||||||++|||+||+.||..... ...... +.......+.+....
T Consensus 186 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~----~~~~~~----i~~~~~~~~~~~~~~ 256 (362)
T 2bdw_A 186 -AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ----HRLYAQ----IKAGAYDYPSPEWDT 256 (362)
T ss_dssp -SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHH----HHHTCCCCCTTGGGG
T ss_pred -ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH----HHHHHH----HHhCCCCCCcccccC
Confidence 334578999999999 67899999999999999999999853221 111111 111111111111112
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
....+.+++.+||+.||++|||+.|++++.|+..
T Consensus 257 ~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~ 290 (362)
T 2bdw_A 257 VTPEAKSLIDSMLTVNPKKRITADQALKVPWICN 290 (362)
T ss_dssp SCHHHHHHHHHHSCSSGGGSCCHHHHTTSHHHHT
T ss_pred CCHHHHHHHHHHcCCChhhCcCHHHHhcCcccCC
Confidence 2335678888999999999999999999998864
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=301.20 Aligned_cols=229 Identities=24% Similarity=0.407 Sum_probs=171.5
Q ss_pred cCCcCcceeecccCeEEEEEEeC----CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~----~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
++|...+.||+|+||.||+|+.. .+..||||++..... ....+.|.+|++++++++|||||++++++.+.+..
T Consensus 49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 125 (325)
T 3kul_A 49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYT---ERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLA 125 (325)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCC---HHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCC
T ss_pred hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCC---HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCcc
Confidence 56788899999999999999874 344599999875422 33456799999999999999999999999999999
Q ss_pred EEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
++||||+++|+|.+++..... ..|.||||+|||++.++.+||+|||+++......
T Consensus 126 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 205 (325)
T 3kul_A 126 MIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDP 205 (325)
T ss_dssp EEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCSSCEECC---
T ss_pred EEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEEECCCCcccccccCc
Confidence 999999999999998854311 1134999999999999999999999998765432
Q ss_pred CC---cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 552 SN---WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 552 ~~---~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
.. .....||+.|+||| |+.++|||||||++|||+| |+.||..... ..... ..........+...
T Consensus 206 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~----~~~~~-~~~~~~~~~~~~~~- 279 (325)
T 3kul_A 206 DAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTN----RDVIS-SVEEGYRLPAPMGC- 279 (325)
T ss_dssp -CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCH----HHHHH-HHHTTCCCCCCTTC-
T ss_pred cceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCH----HHHHH-HHHcCCCCCCCCCc-
Confidence 21 22345678899999 5779999999999999999 9999753221 11111 11111111112111
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
...+.+++.+||+.||++|||+.||++.|.......+
T Consensus 280 -----~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~ 316 (325)
T 3kul_A 280 -----PHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPE 316 (325)
T ss_dssp -----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC
T ss_pred -----CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCcc
Confidence 2246678889999999999999999999988765544
|
| >1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=304.84 Aligned_cols=226 Identities=21% Similarity=0.287 Sum_probs=174.8
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|... ++..+|+|.+... ......+.+|++++++++|||||++++++.+.+..++|
T Consensus 5 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-----~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv 79 (321)
T 1tki_A 5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-----GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMI 79 (321)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-----THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred hceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC-----cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEE
Confidence 57888999999999999999865 5788999987642 12345688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC-------------------------CcccccccCCeeecC--CCceEEecccccccccCCCC
Q 042735 500 YEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDL--EHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~--~~~~kl~DFGla~~~~~~~~ 552 (667)
|||+++|+|.+.+..... ..|.||||+|||++. ++.+||+|||+++......
T Consensus 80 ~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~- 158 (321)
T 1tki_A 80 FEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD- 158 (321)
T ss_dssp ECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC-
T ss_pred EEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCC-
Confidence 999999999998865321 113499999999997 7899999999998765432
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
......||+.|+||| |+.++|||||||++|||+||+.||..... .... ..+.......+.......
T Consensus 159 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~----~~~~----~~i~~~~~~~~~~~~~~~ 230 (321)
T 1tki_A 159 NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN----QQII----ENIMNAEYTFDEEAFKEI 230 (321)
T ss_dssp EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH----HHHH----HHHHHTCCCCCHHHHTTS
T ss_pred ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH----HHHH----HHHHcCCCCCChhhhccC
Confidence 234567999999999 47789999999999999999999853221 1111 111111111111111112
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..++.+++.+||+.||++|||+.|++++.|+...
T Consensus 231 s~~~~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~ 264 (321)
T 1tki_A 231 SIEAMDFVDRLLVKERKSRMTASEALQHPWLKQK 264 (321)
T ss_dssp CHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHSC
T ss_pred CHHHHHHHHHHcCCChhHCcCHHHHhcChhhccC
Confidence 2356788899999999999999999999998653
|
| >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=309.26 Aligned_cols=228 Identities=20% Similarity=0.297 Sum_probs=173.1
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|...+.||+|+||.||+|.. .+++.||||++..... ......+.+.+|+++++.++|||||++++++.+.+..++
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~l 86 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLL-KKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVM 86 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHH-HHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHc-cchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence 46788999999999999999986 5678999998753211 001113468899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||+ +|+|.+.+.... ...|.||||+|||++.++.+||+|||+++...... ..
T Consensus 87 v~E~~-~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~-~~ 164 (336)
T 3h4j_B 87 VIEYA-GGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGN-FL 164 (336)
T ss_dssp EECCC-CEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSB-TT
T ss_pred EEECC-CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCCCEEEEEeccceeccCCc-cc
Confidence 99999 688887764321 11244999999999999999999999998765432 23
Q ss_pred ccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccC--CCCCCCCCchHH
Q 042735 555 SALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD--PRLPPPSPDVQG 625 (667)
Q Consensus 555 ~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 625 (667)
...+||+.|+|||. +.++|||||||++|||+||+.||........ ...+.. ...+...+
T Consensus 165 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~--------~~~i~~~~~~~p~~~s---- 232 (336)
T 3h4j_B 165 KTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL--------FKKVNSCVYVMPDFLS---- 232 (336)
T ss_dssp CCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC--------BCCCCSSCCCCCTTSC----
T ss_pred ccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH--------HHHHHcCCCCCcccCC----
Confidence 45689999999992 4579999999999999999999863221100 001111 11121111
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhcc
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSY 664 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~~ 664 (667)
..+.+++.+||+.||.+|||++|++++.||.....++
T Consensus 233 --~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~~~~~~ 269 (336)
T 3h4j_B 233 --PGAQSLIRRMIVADPMQRITIQEIRRDPWFNVNLPDY 269 (336)
T ss_dssp --HHHHHHHHTTSCSSGGGSCCHHHHTTCHHHHTTCCGG
T ss_pred --HHHHHHHHHHcCCChhHCcCHHHHHhChhhccCCccc
Confidence 2456788899999999999999999999998654443
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-34 Score=317.62 Aligned_cols=298 Identities=23% Similarity=0.212 Sum_probs=218.9
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcc
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALE 82 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~ 82 (667)
++|+.|+|++|.|+++.|..|.++++|++|+|++|+|++..|+.|.++++|++|+|++|+++ .+|.. ...+|+.|+|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC-PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC-CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc-ccccCCEEECC
Confidence 57899999999999888888999999999999999999888899999999999999999998 56665 45679999999
Q ss_pred cccccc-cCCccccCCCCccEEEeeCcccccccCccCCCCCCC--cEEEccCCcc--ccccchhhhcCC-----------
Q 042735 83 NNHFTG-NLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNL--VRISLEGNNM--RGTISEAFGIYL----------- 146 (667)
Q Consensus 83 ~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L--~~L~L~~n~~--~~~~~~~~~~l~----------- 146 (667)
+|.+++ .+|..+.++++|+.|++++|.+++. .+..+++| +.|+|++|.+ ++..+..+..+.
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 206 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSS
T ss_pred CCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCc
Confidence 999987 3467888999999999999988753 34445555 8888888877 554444443322
Q ss_pred ----------------------------------------------------------------------CCCEEECcCC
Q 042735 147 ----------------------------------------------------------------------NLTFLDISDN 156 (667)
Q Consensus 147 ----------------------------------------------------------------------~L~~L~L~~n 156 (667)
+|++|++++|
T Consensus 207 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 286 (562)
T 3a79_B 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286 (562)
T ss_dssp SCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred cchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEecc
Confidence 6777777778
Q ss_pred ccCCccCccC-----------------------------------------------------CCCCCCCEEEccCCcCC
Q 042735 157 NFFGEIASNW-----------------------------------------------------GKCPKLSTLNVSMNNIT 183 (667)
Q Consensus 157 ~l~~~~~~~~-----------------------------------------------------~~l~~L~~L~L~~n~l~ 183 (667)
.+.+.+|..+ ..+++|++|++++|.++
T Consensus 287 ~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~ 366 (562)
T 3a79_B 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366 (562)
T ss_dssp EECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC
T ss_pred EeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccc
Confidence 7777777654 55667777777777777
Q ss_pred CCcCccccCCCCcCeeeccCCccccc--CCccccCCcccceeecccccccccCcc-cccCCCCCCeeeccCCcCCccchh
Q 042735 184 RSIPLEIGNLSTLNEFDLSLNHIVGK--IPKEFGKLNSLTKLILRGNQLIGHLPS-EIGSLTKLEFLNLSTNRFSSLIPE 260 (667)
Q Consensus 184 ~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~ 260 (667)
+..|..+.++++|++|+|++|.+.+. +|..|+.+++|+.|++++|.+.+.+|. .+..+++|++|++++|++++..|.
T Consensus 367 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 446 (562)
T 3a79_B 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446 (562)
T ss_dssp TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS
T ss_pred cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh
Confidence 66666777777777777777776652 234566777777777777777663443 466677777777777777665554
Q ss_pred hhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCcCccc
Q 042735 261 SLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQ 309 (667)
Q Consensus 261 ~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ip~~ 309 (667)
.+. ++|+.|++++|++. .+|..+..+++|++|++++|.++ .+|..
T Consensus 447 ~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 491 (562)
T 3a79_B 447 CLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDG 491 (562)
T ss_dssp SCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTT
T ss_pred hhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHH
Confidence 443 56777777777654 56666667777777777777775 45544
|
| >3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=307.16 Aligned_cols=237 Identities=23% Similarity=0.331 Sum_probs=178.3
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~ 497 (667)
.++|+..+.||+|+||.||+|+.. +++.+|+|++...... .....+.+.+|+.++.++ +|||||++++++.+.+..+
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 86 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVN-DDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLF 86 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSC-SHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhc-chHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEE
Confidence 367899999999999999999875 5788999998654322 223456788999999988 8999999999999999999
Q ss_pred EEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 498 LIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
+||||+++|+|.+++.... ...|.||||+|||++.++++||+|||+++........
T Consensus 87 lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~~ 166 (345)
T 3a8x_A 87 FVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT 166 (345)
T ss_dssp EEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTCC
T ss_pred EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEEeccccccccCCCCc
Confidence 9999999999988775321 1224599999999999999999999999865433344
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCC-hhhhhhhhcccc--CCCCCCCCCchH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPS-PSVINMRLDEML--DPRLPPPSPDVQ 624 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~ 624 (667)
....+||+.|+||| |+.++|||||||++|||+||+.||......... ..........+. ...++...+
T Consensus 167 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~s--- 243 (345)
T 3a8x_A 167 TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLS--- 243 (345)
T ss_dssp BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCCCTTSC---
T ss_pred ccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCCCCCCC---
Confidence 55678999999999 678899999999999999999998632111000 000000001111 122222211
Q ss_pred HHHHHHHHHHHhccccCCCCCCCH------HHHHHHHHHhhhhhc
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTM------QTITQQLLFSLVYFS 663 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~------~ev~~~l~~~~~~~~ 663 (667)
..+.+++.+||+.||++||++ +|+++|.||....|+
T Consensus 244 ---~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~hp~f~~~~w~ 285 (345)
T 3a8x_A 244 ---VKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWD 285 (345)
T ss_dssp ---HHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTSGGGTTCCHH
T ss_pred ---HHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcCCccCCCCHH
Confidence 245678889999999999995 899999999876654
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=299.93 Aligned_cols=229 Identities=23% Similarity=0.333 Sum_probs=166.6
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCch----------------------HHhHHHHHHHHHHHH
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQ----------------------IADQKEFFAEIEALT 476 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~----------------------~~~~~~~~~E~~~l~ 476 (667)
.++|...+.||+|+||.||+|.. .+++.||||++........ ....+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 36788999999999999999986 4578899998865321110 112346899999999
Q ss_pred hcCCCCeeEEEEEEEe--CCceEEEEEecCCCChHHHhcccc-----------------------CCcccccccCCeeec
Q 042735 477 KIRHRNIVKFYGFCSH--ARHSILIYEYLKRGSLATNLSNDA-----------------------AAEELDISSKNVLLD 531 (667)
Q Consensus 477 ~l~H~niv~~~g~~~~--~~~~~lv~ey~~~g~L~~~l~~~~-----------------------~~~~~dlk~~NiLld 531 (667)
+++|||||++++++.+ .+..++||||+++|+|.+.+.... ...|.||||+|||++
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~ 171 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVG 171 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEC
Confidence 9999999999999987 567899999999999876543221 122459999999999
Q ss_pred CCCceEEecccccccccCCCCCcccccccccccCCCC---------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChh
Q 042735 532 LEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDY---------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPS 602 (667)
Q Consensus 532 ~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE~---------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~ 602 (667)
.++.+||+|||+++.............||+.|+|||. +.++|||||||++|||+||+.||...... .
T Consensus 172 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~----~ 247 (298)
T 2zv2_A 172 EDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIM----C 247 (298)
T ss_dssp TTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSHH----H
T ss_pred CCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccHH----H
Confidence 9999999999999876654443455689999999993 34579999999999999999998532210 1
Q ss_pred hhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 603 VINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.......... ..+.. +.. ...+.+++.+||+.||++|||++|++++.|+.
T Consensus 248 ~~~~~~~~~~--~~~~~-~~~---~~~l~~li~~~l~~dp~~R~s~~e~l~hp~~~ 297 (298)
T 2zv2_A 248 LHSKIKSQAL--EFPDQ-PDI---AEDLKDLITRMLDKNPESRIVVPEIKLHPWVT 297 (298)
T ss_dssp HHHHHHHCCC--CCCSS-SCC---CHHHHHHHHHHTCSCTTTSCCHHHHTTCHHHH
T ss_pred HHHHHhcccC--CCCCc-ccc---CHHHHHHHHHHhhcChhhCCCHHHHhcCcccc
Confidence 1111111111 11111 111 12466788899999999999999999999874
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=331.95 Aligned_cols=292 Identities=22% Similarity=0.278 Sum_probs=254.4
Q ss_pred CCccccCCCCCCEEEccCccccc-----------------cCCcccc--CCCCCCeeeccccccceeCCCCCcc-cccCE
Q 042735 19 IPTETWNLKSLVKLGLGGNQFRG-----------------SLPSSVG--NLSSLRYLFLFENNLSGSIPPSVGN-LMLTV 78 (667)
Q Consensus 19 ~p~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~ 78 (667)
+|..|.++++|++|+|++|+|++ .+|..++ ++++|++|+|++|++.+.+|..++. .+|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78889999999999999999998 3899988 9999999999999999999998887 46999
Q ss_pred EEccccc-ccc-cCCccccCCC-------CccEEEeeCcccccccCc--cCCCCCCCcEEEccCCccccccchhhhcCCC
Q 042735 79 LALENNH-FTG-NLRHNICRNG-------ALERVIVGGNHFRGPIPK--CLRNCPNLVRISLEGNNMRGTISEAFGIYLN 147 (667)
Q Consensus 79 L~L~~n~-l~~-~~~~~~~~~~-------~L~~L~l~~n~~~~~~p~--~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 147 (667)
|+|++|+ +++ .+|..+..+. +|+.|++++|+++ .+|. .+.++++|+.|+|++|.++ .+| .|+.+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999998 988 7887666554 9999999999999 7888 8999999999999999998 677 8999999
Q ss_pred CCEEECcCCccCCccCccCCCCCC-CCEEEccCCcCCCCcCccccCCCC--cCeeeccCCcccccCCcc---cc--CCcc
Q 042735 148 LTFLDISDNNFFGEIASNWGKCPK-LSTLNVSMNNITRSIPLEIGNLST--LNEFDLSLNHIVGKIPKE---FG--KLNS 219 (667)
Q Consensus 148 L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~L~~n~l~~~~p~~---~~--~l~~ 219 (667)
|+.|+|++|.+. .+|..+..+++ |+.|+|++|.++ .+|..+..++. |+.|+|++|.+.+.+|.. +. .+++
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 999999999998 88989999999 999999999998 67887877754 999999999998876632 22 3458
Q ss_pred cceeecccccccccCccc-ccCCCCCCeeeccCCcCCccchhhhhc--------ccCCCeecCCCccCccccchhhh--c
Q 042735 220 LTKLILRGNQLIGHLPSE-IGSLTKLEFLNLSTNRFSSLIPESLGN--------LLKLHYLDLSKYQFIQELPKELG--K 288 (667)
Q Consensus 220 L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~--------l~~L~~L~ls~n~~~~~~p~~l~--~ 288 (667)
|+.|+|++|.+. .+|.. +..+++|+.|+|++|+++. +|..+.. +++|+.|+|++|++. .+|..+. .
T Consensus 675 L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 675 ASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp EEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred cCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 999999999998 45555 4589999999999999985 4554433 339999999999977 7899887 9
Q ss_pred CCCCCEEECcCCCCCCcCcccccCCcccccc
Q 042735 289 LVQLSELELSHNFLGREIPSQICSMECCEVF 319 (667)
Q Consensus 289 l~~L~~L~l~~n~l~~~ip~~~~~~~~~~~~ 319 (667)
+++|+.|+|++|.+.+ +|..+..+..+..+
T Consensus 752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781 (876)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred CCCcCEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence 9999999999999987 89888877776655
|
| >3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=322.56 Aligned_cols=239 Identities=20% Similarity=0.311 Sum_probs=178.0
Q ss_pred HHHHHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 416 IIRAINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 416 ~~~~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
+....++|+..+.||+|+||+||+|+.. +++.+|+|++..... ......+.+.+|+.+++.++|||||++++++.+.+
T Consensus 64 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~-~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~ 142 (410)
T 3v8s_A 64 LRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEM-IKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR 142 (410)
T ss_dssp HSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH-HHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred cccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhh-hhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECC
Confidence 3334678999999999999999999875 478899998753110 00011234789999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 495 HSILIYEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
..|+||||+++|+|.+.+..... ..|.||||+|||+|.++.+||+|||+|+......
T Consensus 143 ~~~lV~E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~ 222 (410)
T 3v8s_A 143 YLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEG 222 (410)
T ss_dssp EEEEEECCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTS
T ss_pred EEEEEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeEeeccCC
Confidence 99999999999999988754321 1244999999999999999999999998765432
Q ss_pred C-CcccccccccccCCC----------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCC
Q 042735 552 S-NWSALVGTYRYVAPD----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620 (667)
Q Consensus 552 ~-~~~~~~Gt~~y~aPE----------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (667)
. ...+.+||+.|+||| |+.++|||||||++|||+||+.||...... ...............+...
T Consensus 223 ~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~----~~~~~i~~~~~~~~~p~~~ 298 (410)
T 3v8s_A 223 MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV----GTYSKIMNHKNSLTFPDDN 298 (410)
T ss_dssp EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHH----HHHHHHHTHHHHCCCCTTC
T ss_pred cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChh----hHHHHHHhccccccCCCcc
Confidence 2 234678999999999 456899999999999999999998633211 1111111110011122111
Q ss_pred CchHHHHHHHHHHHHhccccCCCC--CCCHHHHHHHHHHhhhhhc
Q 042735 621 PDVQGKLISIMEVAFSCLDVSPES--RPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 621 ~~~~~~~~~~~~~~~~Cl~~~p~~--RPt~~ev~~~l~~~~~~~~ 663 (667)
.. ...+.+++.+||..+|.+ ||+++||++|.||..+.|.
T Consensus 299 -~~---s~~~~~li~~lL~~~~~rlgR~~~~ei~~Hp~f~~~~w~ 339 (410)
T 3v8s_A 299 -DI---SKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQWA 339 (410)
T ss_dssp -CC---CHHHHHHHHHHSSCGGGCTTSSCHHHHHTSGGGCCSSCC
T ss_pred -cc---cHHHHHHHHHHccChhhhCCCCCHHHHhcCccccCCCHH
Confidence 11 124567888999998988 9999999999999887665
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=309.87 Aligned_cols=310 Identities=21% Similarity=0.155 Sum_probs=279.7
Q ss_pred cEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcccc
Q 042735 6 RELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALENN 84 (667)
Q Consensus 6 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n 84 (667)
+.++.+++.++. +|..+ .++|++|+|++|+|++..|..|.++++|++|+|++|.+++..|..+.. .+|+.|+|++|
T Consensus 14 ~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 578889999986 46654 368999999999999988999999999999999999999888988887 56999999999
Q ss_pred cccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCc
Q 042735 85 HFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIAS 164 (667)
Q Consensus 85 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 164 (667)
.++...+..+.++.+|+.|++++|.+.+..|..+.++++|+.|+|++|.+++..+..|..+++|+.|++++|.+.+..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 99977777789999999999999999999999999999999999999999998899999999999999999999887777
Q ss_pred cCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCC
Q 042735 165 NWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKL 244 (667)
Q Consensus 165 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 244 (667)
.+..+++|+.|+|++|.+.+..+..|.++++|+.|++++|.+.+.+|..+....+|+.|++++|.+.+..+..+..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 89999999999999999998888899999999999999998887788777777799999999999986665789999999
Q ss_pred CeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCcCcccccCCccccc
Q 042735 245 EFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEV 318 (667)
Q Consensus 245 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~~~ 318 (667)
+.|+|++|.+++..+..+.++++|+.|++++|++.+..|..|..+++|+.|++++|.+....+..+..+..+..
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 99999999999988888999999999999999999988999999999999999999997655555555444433
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=310.14 Aligned_cols=231 Identities=18% Similarity=0.220 Sum_probs=172.6
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCC-CchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLP-SDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~-~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
++|+..+.||+|+||.||+|.. .+++.||||++..... .......+.+.+|++++++++|||||++++++.+.+..++
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l 103 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM 103 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 5688999999999999999986 4688999998743110 0001124578999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc----------------------------CCcccccccCCeeecCCCc---eEEecccccccc
Q 042735 499 IYEYLKRGSLATNLSNDA----------------------------AAEELDISSKNVLLDLEHK---AHVSDFGIAKFL 547 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~----------------------------~~~~~dlk~~NiLld~~~~---~kl~DFGla~~~ 547 (667)
||||+++|+|.+.+.... ...|.||||+|||++.++. +||+|||+++..
T Consensus 104 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~ 183 (351)
T 3c0i_A 104 VFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQL 183 (351)
T ss_dssp EEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEEC
T ss_pred EEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcceeEe
Confidence 999999999977654211 1123499999999986655 999999999877
Q ss_pred cCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 548 KPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 548 ~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
..........+||+.|+||| |+.++|||||||++|||+||+.||..... .... .+..........
T Consensus 184 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~~~----~i~~~~~~~~~~ 254 (351)
T 3c0i_A 184 GESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE-----RLFE----GIIKGKYKMNPR 254 (351)
T ss_dssp CTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH-----HHHH----HHHHTCCCCCHH
T ss_pred cCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH-----HHHH----HHHcCCCCCCcc
Confidence 65444345568999999999 67899999999999999999999853211 1111 111111111111
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
........+.+++.+||+.||++|||+.|++++.|+...
T Consensus 255 ~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~ 293 (351)
T 3c0i_A 255 QWSHISESAKDLVRRMLMLDPAERITVYEALNHPWLKER 293 (351)
T ss_dssp HHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHTH
T ss_pred ccccCCHHHHHHHHHHCCCChhHCcCHHHHhcChhhcCC
Confidence 111112356788889999999999999999999998653
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=304.33 Aligned_cols=225 Identities=20% Similarity=0.376 Sum_probs=169.7
Q ss_pred HHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc--
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH-- 495 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~-- 495 (667)
..++|+..+.||+|+||.||+|+.. +++.||||++..... ....+.+.+|++++++++|||||++++++.+...
T Consensus 4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~ 80 (332)
T 3qd2_B 4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNR---ELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEK 80 (332)
T ss_dssp HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCST---TTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCH
T ss_pred hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCc---hhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccch
Confidence 3578999999999999999999875 688999999864322 2234679999999999999999999999866542
Q ss_pred -------------------------------------------------------eEEEEEecCCCChHHHhccccC---
Q 042735 496 -------------------------------------------------------SILIYEYLKRGSLATNLSNDAA--- 517 (667)
Q Consensus 496 -------------------------------------------------------~~lv~ey~~~g~L~~~l~~~~~--- 517 (667)
.++||||+++|+|.+++.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~ 160 (332)
T 3qd2_B 81 WQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLED 160 (332)
T ss_dssp HHHHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGG
T ss_pred hhhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccc
Confidence 7999999999999988764321
Q ss_pred ------------------------CcccccccCCeeecCCCceEEecccccccccCCC------------CCcccccccc
Q 042735 518 ------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS------------SNWSALVGTY 561 (667)
Q Consensus 518 ------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~------------~~~~~~~Gt~ 561 (667)
..|.||||+||+++.++.+||+|||+++...... ......+||+
T Consensus 161 ~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 240 (332)
T 3qd2_B 161 REHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTK 240 (332)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CG
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCc
Confidence 1234999999999999999999999998765432 1223457999
Q ss_pred cccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHH
Q 042735 562 RYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF 635 (667)
Q Consensus 562 ~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (667)
.|+||| |+.++|||||||++|||+||..|+... ............+ .........+.+++.
T Consensus 241 ~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~----------~~~~~~~~~~~~~---~~~~~~~~~~~~li~ 307 (332)
T 3qd2_B 241 LYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER----------VRIITDVRNLKFP---LLFTQKYPQEHMMVQ 307 (332)
T ss_dssp GGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH----------HHHHHHHHTTCCC---HHHHHHCHHHHHHHH
T ss_pred CccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH----------HHHHHHhhccCCC---cccccCChhHHHHHH
Confidence 999999 678999999999999999998763210 0001111111111 111222345678889
Q ss_pred hccccCCCCCCCHHHHHHHHHHhh
Q 042735 636 SCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 636 ~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
+||+.||++|||++|++++.||..
T Consensus 308 ~~l~~~p~~Rps~~~~l~~~~f~~ 331 (332)
T 3qd2_B 308 DMLSPSPTERPEATDIIENAIFEN 331 (332)
T ss_dssp HHHCSSGGGSCCHHHHHHSTTCCC
T ss_pred HHccCCCCcCCCHHHHhhchhhhc
Confidence 999999999999999999988753
|
| >1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=297.85 Aligned_cols=236 Identities=23% Similarity=0.317 Sum_probs=168.3
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|+..+.||+|+||.||+|+..+++.+|||++..... .....+.+.+|++++++++|||||++++++.+.+..++||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 79 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKE--DEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVF 79 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSG--GGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEE
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEecccc--ccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEE
Confidence 57888999999999999999988899999999865432 1122356889999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 501 EYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
||+++ +|.+.+.... ...|.||||+||+++.++.+||+|||+++.........+
T Consensus 80 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~ 158 (288)
T 1ob3_A 80 EHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYT 158 (288)
T ss_dssp ECCSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC------
T ss_pred EecCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECccccccCccccccc
Confidence 99985 8877664321 112449999999999999999999999987654333344
Q ss_pred cccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh------------hhhccccCCCC
Q 042735 556 ALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN------------MRLDEMLDPRL 616 (667)
Q Consensus 556 ~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 616 (667)
...||+.|+||| |+.++|||||||++|||+||+.||.............. .......++..
T Consensus 159 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (288)
T 1ob3_A 159 HEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNF 238 (288)
T ss_dssp ---CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTC
T ss_pred cccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhccccccccc
Confidence 567999999998 56789999999999999999999863321100000000 00000011111
Q ss_pred CCCC----Cc-hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 617 PPPS----PD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 617 ~~~~----~~-~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.... .. .......+.+++.+||+.||++|||++|++++.||..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~ 286 (288)
T 1ob3_A 239 TVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKE 286 (288)
T ss_dssp CCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC
T ss_pred ccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcCcchhh
Confidence 1000 00 0011234668888999999999999999999998864
|
| >2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-35 Score=303.11 Aligned_cols=230 Identities=18% Similarity=0.275 Sum_probs=173.6
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCc--hHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSD--QIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
+.|+..+.||+|+||.||+|... ++..+|||.+....... .....+.+.+|++++++++|||||++++++.+....+
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 90 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI 90 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 46888999999999999999874 57889999886533211 1113467899999999999999999999999999999
Q ss_pred EEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCC----ceEEecccccccccC
Q 042735 498 LIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEH----KAHVSDFGIAKFLKP 549 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~----~~kl~DFGla~~~~~ 549 (667)
+||||+++|+|.+++..... ..|.||||+||+++.++ .+||+|||+++....
T Consensus 91 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~ 170 (326)
T 2y0a_A 91 LILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 170 (326)
T ss_dssp EEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCT
T ss_pred EEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCC
Confidence 99999999999998864321 12349999999999887 899999999987654
Q ss_pred CCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 550 DSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
.. ......||+.|+||| |+.++|||||||++|||+||+.||..... ..... .... .....+ ....
T Consensus 171 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~----~~~~~-~~~~-~~~~~~--~~~~ 241 (326)
T 2y0a_A 171 GN-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK----QETLA-NVSA-VNYEFE--DEYF 241 (326)
T ss_dssp TS-CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH----HHHHH-HHHH-TCCCCC--HHHH
T ss_pred CC-ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH----HHHHH-HHHh-cCCCcC--cccc
Confidence 32 234568999999999 57789999999999999999999853221 00110 0000 011111 0000
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
......+.+++.+||+.||++|||++|++++.|+..
T Consensus 242 ~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~ 277 (326)
T 2y0a_A 242 SNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKP 277 (326)
T ss_dssp TTSCHHHHHHHHHHSCSSGGGSCCHHHHHHSTTTSC
T ss_pred ccCCHHHHHHHHHHccCChhhCCCHHHHhcCCCccC
Confidence 111234667888999999999999999999998864
|
| >1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=308.25 Aligned_cols=232 Identities=23% Similarity=0.344 Sum_probs=178.0
Q ss_pred HHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCce
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~ 496 (667)
..++|...+.||+|+||.||+|+.. +++.||||++...... .....+.+.+|.+++.++ +|||||++++++.+.+..
T Consensus 15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVL-MDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHH-HTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhh-hhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 4678999999999999999999875 5788999988542100 011235678899999887 899999999999999999
Q ss_pred EEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
|+||||+++|+|.+++.... ...|.||||+|||++.++.+||+|||+++.......
T Consensus 94 ~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~ 173 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDA 173 (345)
T ss_dssp EEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC
T ss_pred EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEeEChhhhhcccCCC
Confidence 99999999999988875421 122459999999999999999999999986544444
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....+||+.|+||| |+.++|||||||++|||+||+.||..... ......... ..+..+...+
T Consensus 174 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~----~~~~~~i~~--~~~~~p~~~s----- 242 (345)
T 1xjd_A 174 KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE----EELFHSIRM--DNPFYPRWLE----- 242 (345)
T ss_dssp CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHH--CCCCCCTTSC-----
T ss_pred cccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCH----HHHHHHHHh--CCCCCCcccC-----
Confidence 455678999999999 67889999999999999999999863221 111111111 1222222221
Q ss_pred HHHHHHHHHhccccCCCCCCCHH-HHHHHHHHhhhhhc
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQ-TITQQLLFSLVYFS 663 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~-ev~~~l~~~~~~~~ 663 (667)
..+.+++.+||+.||++||++. ||+++.||....|+
T Consensus 243 -~~~~~li~~lL~~dp~~R~~~~~~i~~hp~f~~~~w~ 279 (345)
T 1xjd_A 243 -KEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREINWE 279 (345)
T ss_dssp -HHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTTCCHH
T ss_pred -HHHHHHHHHHhcCCHhHcCCChHHHHcCccccCCCHH
Confidence 2456788899999999999998 99999999876654
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=309.15 Aligned_cols=233 Identities=21% Similarity=0.374 Sum_probs=177.5
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|+.. +++.+|+|++..... ......+.+.+|++++++++|||||++++++.+.+..++
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~-~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~l 92 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKC-VERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFM 92 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHH-HHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhc-ccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 367899999999999999999864 578899998753211 011224578899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||+++|+|..++..... ..|.||||+|||++.++.+||+|||+++..... ...
T Consensus 93 v~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~-~~~ 171 (384)
T 4fr4_A 93 VVDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE-TQI 171 (384)
T ss_dssp EECCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTT-CCB
T ss_pred EEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCCCEEEeccceeeeccCC-Cce
Confidence 9999999999988764321 124499999999999999999999999876543 234
Q ss_pred ccccccccccCCC---------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 555 SALVGTYRYVAPD---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 555 ~~~~Gt~~y~aPE---------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
...+||+.|+||| |+.++|||||||++|||+||+.||....... ........ .......+...+
T Consensus 172 ~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~-~~~~~~~~--~~~~~~~p~~~s---- 244 (384)
T 4fr4_A 172 TTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTS-SKEIVHTF--ETTVVTYPSAWS---- 244 (384)
T ss_dssp CCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSC-HHHHHHHH--HHCCCCCCTTSC----
T ss_pred eccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCcc-HHHHHHHH--hhcccCCCCcCC----
Confidence 5678999999999 3568999999999999999999986332211 01111110 011112222221
Q ss_pred HHHHHHHHHHhccccCCCCCCC-HHHHHHHHHHhhhhhc
Q 042735 626 KLISIMEVAFSCLDVSPESRPT-MQTITQQLLFSLVYFS 663 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt-~~ev~~~l~~~~~~~~ 663 (667)
..+.+++.+||+.+|++||+ +++|.++.||....|+
T Consensus 245 --~~~~~li~~lL~~dP~~R~s~~~~l~~hp~f~~~~w~ 281 (384)
T 4fr4_A 245 --QEMVSLLKKLLEPNPDQRFSQLSDVQNFPYMNDINWD 281 (384)
T ss_dssp --HHHHHHHHHHSCSSGGGSCCSHHHHHTSGGGTTCCHH
T ss_pred --HHHHHHHHHHhcCCHhHhcccHHHHHcChhhhcCCHH
Confidence 24667888999999999998 9999999999876654
|
| >4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-36 Score=320.00 Aligned_cols=244 Identities=22% Similarity=0.275 Sum_probs=179.8
Q ss_pred HHHHHHHHcCCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEE
Q 042735 413 YVEIIRAINDFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCS 491 (667)
Q Consensus 413 ~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~ 491 (667)
+.++....++|+..+.||+|+||+||+|+... ++.+|||++.+... ......+.+.+|+.++.+++|||||+++++|.
T Consensus 66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 144 (437)
T 4aw2_A 66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEM-LKRAETACFREERDVLVNGDSKWITTLHYAFQ 144 (437)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHH-HHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHh-hhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence 34444456899999999999999999998755 67899998753110 00011224889999999999999999999999
Q ss_pred eCCceEEEEEecCCCChHHHhccc--cC-----------------------CcccccccCCeeecCCCceEEeccccccc
Q 042735 492 HARHSILIYEYLKRGSLATNLSND--AA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKF 546 (667)
Q Consensus 492 ~~~~~~lv~ey~~~g~L~~~l~~~--~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~ 546 (667)
+.+..++|||||++|+|.+++... .. ..|.||||+|||+|.++.+||+|||+|+.
T Consensus 145 ~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~~ 224 (437)
T 4aw2_A 145 DDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLK 224 (437)
T ss_dssp CSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred eCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhhh
Confidence 999999999999999999988652 11 11349999999999999999999999987
Q ss_pred ccCCCC-CcccccccccccCCC-----------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCC
Q 042735 547 LKPDSS-NWSALVGTYRYVAPD-----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP 614 (667)
Q Consensus 547 ~~~~~~-~~~~~~Gt~~y~aPE-----------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~ 614 (667)
...... ..+..+||+.||||| |+.++|||||||++|||+||+.||...... .............
T Consensus 225 ~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~----~~~~~i~~~~~~~ 300 (437)
T 4aw2_A 225 LMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLV----ETYGKIMNHKERF 300 (437)
T ss_dssp CCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHH----HHHHHHHTHHHHC
T ss_pred cccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChh----HHHHhhhhccccc
Confidence 654332 234468999999999 356899999999999999999998643211 1111111100011
Q ss_pred CCCCCCCchHHHHHHHHHHHHhccccCCCC--CCCHHHHHHHHHHhhhhhcc
Q 042735 615 RLPPPSPDVQGKLISIMEVAFSCLDVSPES--RPTMQTITQQLLFSLVYFSY 664 (667)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~--RPt~~ev~~~l~~~~~~~~~ 664 (667)
..|....... ..+.+++.+|+..+|++ ||+++|++++.||..+.|+.
T Consensus 301 ~~p~~~~~~s---~~~~dLi~~lL~~~~~r~~r~~~~eil~Hpff~~i~w~~ 349 (437)
T 4aw2_A 301 QFPTQVTDVS---ENAKDLIRRLICSREHRLGQNGIEDFKKHPFFSGIDWDN 349 (437)
T ss_dssp CCCSSCCCSC---HHHHHHHHTTSSCGGGCTTTTTTHHHHTSGGGTTCCTTT
T ss_pred cCCcccccCC---HHHHHHHHHHhcccccccCCCCHHHHhCCCccCCCCHHH
Confidence 2222111111 24567788999888887 99999999999999877653
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=295.81 Aligned_cols=229 Identities=29% Similarity=0.401 Sum_probs=165.7
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHh--cCCCCeeEEEEEEEeC----C
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK--IRHRNIVKFYGFCSHA----R 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~--l~H~niv~~~g~~~~~----~ 494 (667)
++|+..+.||+|+||.||+|+. +++.||||++.. ...+.+.+|.+++.. ++||||+++++++.+. .
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~-------~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~ 79 (301)
T 3q4u_A 8 RDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSS-------RDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSST 79 (301)
T ss_dssp GGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECG-------GGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEE
T ss_pred CcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecc-------ccchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCc
Confidence 5788999999999999999988 678899999753 123456777777766 7999999999997653 4
Q ss_pred ceEEEEEecCCCChHHHhcccc-------------------------------CCcccccccCCeeecCCCceEEecccc
Q 042735 495 HSILIYEYLKRGSLATNLSNDA-------------------------------AAEELDISSKNVLLDLEHKAHVSDFGI 543 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~-------------------------------~~~~~dlk~~NiLld~~~~~kl~DFGl 543 (667)
..++||||+++|+|.+++.... ...|.||||+|||++.++.+||+|||+
T Consensus 80 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~ 159 (301)
T 3q4u_A 80 QLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGL 159 (301)
T ss_dssp EEEEEECCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred eeEEehhhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCC
Confidence 5889999999999988764321 123559999999999999999999999
Q ss_pred cccccCCCCC----cccccccccccCCCC------------CCCchHHHHHHHHHHHHhC----------CCCCCCCccC
Q 042735 544 AKFLKPDSSN----WSALVGTYRYVAPDY------------RKKCDVYSFRVLALEVIKG----------KHPRGFVSSI 597 (667)
Q Consensus 544 a~~~~~~~~~----~~~~~Gt~~y~aPE~------------~~~~DV~sfGvvl~ElltG----------~~p~~~~~~~ 597 (667)
++........ .....||+.|+|||. +.++|||||||++|||+|| +.||......
T Consensus 160 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~ 239 (301)
T 3q4u_A 160 AVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPN 239 (301)
T ss_dssp CEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCS
T ss_pred eeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCC
Confidence 9876543321 233579999999992 1478999999999999999 6666432211
Q ss_pred CCChhhhhh-hhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 598 LPSPSVINM-RLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 598 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
......... .......+..+.. .........+.+++.+||+.||++|||++||++.|...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 240 DPSFEDMRKVVCVDQQRPNIPNR-WFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp SCCHHHHHHHHTTSCCCCCCCGG-GGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred CcchhhhhHHHhccCCCCCCChh-hccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 111111111 1111111222111 01123445688899999999999999999999998753
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-35 Score=307.92 Aligned_cols=226 Identities=24% Similarity=0.392 Sum_probs=171.1
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|... ++..||||.+..... ....+.|.+|++++++++|||||+++|++.+.+..++|
T Consensus 114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 190 (377)
T 3cbl_A 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLP---PDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIV 190 (377)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSC---HHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCC---HHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEE
Confidence 57888899999999999999885 688899999865321 23345689999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC--
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-- 552 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-- 552 (667)
|||+++|+|.+++.... ...|.||||+|||++.++.+||+|||+++.......
T Consensus 191 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~ 270 (377)
T 3cbl_A 191 MELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAA 270 (377)
T ss_dssp EECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEEC
T ss_pred EEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceee
Confidence 99999999998875421 112349999999999999999999999986443211
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
......+|+.|+||| |+.++|||||||++|||+| |+.||..... ..... ..........+...+
T Consensus 271 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~----~~~~~-~~~~~~~~~~~~~~~---- 341 (377)
T 3cbl_A 271 SGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSN----QQTRE-FVEKGGRLPCPELCP---- 341 (377)
T ss_dssp CSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCH----HHHHH-HHHTTCCCCCCTTCC----
T ss_pred cCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH----HHHHH-HHHcCCCCCCCCCCC----
Confidence 111234678899999 5779999999999999999 9999764321 11111 111111111121111
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..+.+++.+||+.||++|||+++|++.|.....
T Consensus 342 --~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~ 374 (377)
T 3cbl_A 342 --DAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRK 374 (377)
T ss_dssp --HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHh
Confidence 246678889999999999999999999887543
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=304.45 Aligned_cols=226 Identities=22% Similarity=0.415 Sum_probs=160.5
Q ss_pred cCCcCcceeecccCeEEEEEEeC----CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~----~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
++|+..+.||+|+||.||+|+.. .+..||||++.... .....+.|.+|++++++++|||||+++|++.+.+..
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 121 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY---TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPV 121 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCce
Confidence 57889999999999999999864 46679999986532 233456799999999999999999999999999999
Q ss_pred EEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
++||||+++|+|.+++..... ..|.||||+|||++.++.+||+|||+++......
T Consensus 122 ~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 201 (373)
T 2qol_A 122 MIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDP 201 (373)
T ss_dssp EEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC----------
T ss_pred EEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCccccccccCC
Confidence 999999999999998864321 1234999999999999999999999998765432
Q ss_pred CC---cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 552 SN---WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 552 ~~---~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
.. .....||+.|+||| |+.++|||||||++|||++ |+.||..... ...... +........+..
T Consensus 202 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~----~~~~~~-i~~~~~~~~~~~-- 274 (373)
T 2qol_A 202 EAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSN----QDVIKA-VDEGYRLPPPMD-- 274 (373)
T ss_dssp ------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCH----HHHHHH-HHTTEECCCCTT--
T ss_pred ccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCH----HHHHHH-HHcCCCCCCCcc--
Confidence 21 12234578899999 6779999999999999998 9999753221 111111 111111111111
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
....+.+++.+||+.+|++||+|.||++.|.....
T Consensus 275 ----~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~ 309 (373)
T 2qol_A 275 ----CPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIR 309 (373)
T ss_dssp ----CBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHh
Confidence 12356788889999999999999999998876643
|
| >2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=302.37 Aligned_cols=240 Identities=20% Similarity=0.351 Sum_probs=161.3
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|... +++.||||++...... ...+.+.+|++++++++|||||++++++.+++..++
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l 80 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEE---GTPSTAIREISLMKELKHENIVRLYDVIHTENKLTL 80 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTT---CSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccccc---ccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEE
Confidence 467888999999999999999864 5788999988643221 123468899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------------CCcccccccCCeeecCCCceEEeccccccccc
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLK 548 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~ 548 (667)
||||++ |+|.+.+.... ...|.||||+|||++.++.+||+|||+++...
T Consensus 81 v~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 159 (317)
T 2pmi_A 81 VFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLARAFG 159 (317)
T ss_dssp EEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred EEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence 999999 58887764321 01134999999999999999999999998765
Q ss_pred CCCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh----------hhc--
Q 042735 549 PDSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM----------RLD-- 609 (667)
Q Consensus 549 ~~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~----------~~~-- 609 (667)
..........||+.|+||| |+.++|||||||++|||+||+.||...........+... ...
T Consensus 160 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 239 (317)
T 2pmi_A 160 IPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKL 239 (317)
T ss_dssp SCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGC
T ss_pred CCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhhh
Confidence 4433445568999999999 467899999999999999999998632211000000000 000
Q ss_pred cccCCCCCCCCC-chH---------HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 610 EMLDPRLPPPSP-DVQ---------GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 610 ~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
....+..+...+ ... .....+.+++.+||+.||++|||++|++++.||...+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~ 303 (317)
T 2pmi_A 240 PKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPWFAEYYHH 303 (317)
T ss_dssp TTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCC-
T ss_pred hhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCChhhhcccch
Confidence 000011100000 000 011257788899999999999999999999999876654
|
| >1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=302.12 Aligned_cols=228 Identities=22% Similarity=0.365 Sum_probs=176.6
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|+.. +++.+|+|++..... ......+.+.+|+.+++.++|||||++++++.+.+..++
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~l 83 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIV-VRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFM 83 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-HHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHh-hhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEE
Confidence 468899999999999999999874 688999998754211 011224568899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||+++|+|.+++..... ..|.||||+|||++.++.+||+|||+++..... .
T Consensus 84 v~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~---~ 160 (318)
T 1fot_A 84 IMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV---T 160 (318)
T ss_dssp EECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC---B
T ss_pred EEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCCEEEeecCcceecCCc---c
Confidence 9999999999988754321 123499999999999999999999999875432 3
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
...+||+.|+||| |+.++|||||||++|||+||+.||..... .......... ....+...+ .
T Consensus 161 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~----~~~~~~i~~~--~~~~p~~~~------~ 228 (318)
T 1fot_A 161 YTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT----MKTYEKILNA--ELRFPPFFN------E 228 (318)
T ss_dssp CCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH----HHHHHHHHHC--CCCCCTTSC------H
T ss_pred ccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH----HHHHHHHHhC--CCCCCCCCC------H
Confidence 3568999999999 67899999999999999999999853221 1111111111 122222221 2
Q ss_pred HHHHHHHhccccCCCCCC-----CHHHHHHHHHHhhhhhc
Q 042735 629 SIMEVAFSCLDVSPESRP-----TMQTITQQLLFSLVYFS 663 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~~ 663 (667)
.+.+++.+||+.||++|| +++|+++|.||..+.|+
T Consensus 229 ~~~~li~~lL~~dp~~R~~~~~~~~~~i~~hp~f~~~~~~ 268 (318)
T 1fot_A 229 DVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWE 268 (318)
T ss_dssp HHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSCCHH
T ss_pred HHHHHHHHHhccCHHHcCCCcCCCHHHHhcCccccCCCHH
Confidence 456788899999999999 99999999999876654
|
| >3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=303.28 Aligned_cols=229 Identities=24% Similarity=0.347 Sum_probs=172.0
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|... +++.||||++..... ....+.+.+|+.++++++|||||++++++.+++..++
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l 82 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYL 82 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC----------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccc---cchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEE
Confidence 468899999999999999999865 688899999864322 1223568899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCC--C
Q 042735 499 IYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS--S 552 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~--~ 552 (667)
||||+++|+|.+.+..... ..|.||||+|||++.++.+||+|||+++...... .
T Consensus 83 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~ 162 (323)
T 3tki_A 83 FLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER 162 (323)
T ss_dssp EEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEEC
T ss_pred EEEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeeccceeccCCccc
Confidence 9999999999888764321 1234999999999999999999999998654322 2
Q ss_pred CcccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 553 NWSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
.....+||+.|+|||. +.++|||||||++|||+||+.||....... ..... .... .....+. ..
T Consensus 163 ~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~--~~~~~-~~~~---~~~~~~~---~~ 233 (323)
T 3tki_A 163 LLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSC--QEYSD-WKEK---KTYLNPW---KK 233 (323)
T ss_dssp CBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTS--HHHHH-HHTT---CTTSTTG---GG
T ss_pred ccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHH--HHHHH-Hhcc---cccCCcc---cc
Confidence 2345689999999992 457999999999999999999986433210 10110 0000 0111111 11
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
....+.+++.+||+.||++|||++|++++.|+...
T Consensus 234 ~~~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~~ 268 (323)
T 3tki_A 234 IDSAPLALLHKILVENPSARITIPDIKKDRWYNKP 268 (323)
T ss_dssp SCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCC
T ss_pred CCHHHHHHHHHHccCChhhCcCHHHHhhChhhccc
Confidence 12345678889999999999999999999998654
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-35 Score=303.49 Aligned_cols=227 Identities=22% Similarity=0.306 Sum_probs=155.0
Q ss_pred cceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceEEEEEec
Q 042735 426 KYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSILIYEYL 503 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~lv~ey~ 503 (667)
.+.||+|+||.||+|... +++.||||++.. .....+.+|++++.++. |||||++++++.+....++||||+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~-------~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~ 88 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISK-------RMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELL 88 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEG-------GGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEECh-------hhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEcc
Confidence 478999999999999874 578899999753 12456789999999998 999999999999999999999999
Q ss_pred CCCChHHHhccccC------------------------CcccccccCCeeecCCC---ceEEecccccccccCCCCCccc
Q 042735 504 KRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEH---KAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 504 ~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~---~~kl~DFGla~~~~~~~~~~~~ 556 (667)
++|+|.+.+..... ..|.||||+|||++.++ .+||+|||+++...........
T Consensus 89 ~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~ 168 (325)
T 3kn6_A 89 NGGELFERIKKKKHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKT 168 (325)
T ss_dssp CSCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-------
T ss_pred CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccc
Confidence 99999988764321 12349999999998765 8999999999876655444556
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
.+||+.|+||| |+.++|||||||++|||+||+.||............. .....+.......+.+........+
T Consensus 169 ~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~s~~~ 247 (325)
T 3kn6_A 169 PCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAV-EIMKKIKKGDFSFEGEAWKNVSQEA 247 (325)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHH-HHHHHHTTTCCCCCSHHHHTSCHHH
T ss_pred cCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHH-HHHHHHHcCCCCCCcccccCCCHHH
Confidence 78999999999 5678999999999999999999986432211111111 1111222222222222222223457
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.+++.+||+.||++|||++|++++.|+...
T Consensus 248 ~~li~~~L~~dP~~Rpt~~ell~h~w~~~~ 277 (325)
T 3kn6_A 248 KDLIQGLLTVDPNKRLKMSGLRYNEWLQDG 277 (325)
T ss_dssp HHHHHHHHCCCTTTCCCTTTSTTCGGGCTT
T ss_pred HHHHHHHCCCChhHCCCHHHHhcChhhccC
Confidence 788899999999999999999999998643
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-35 Score=304.38 Aligned_cols=236 Identities=22% Similarity=0.273 Sum_probs=172.9
Q ss_pred HHHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCC-CchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 418 RAINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLP-SDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 418 ~~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~-~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
+..++|...+.||+|+||.||+|.. .++..+|+|++..... .......+.+.+|++++++++|||||++++++.+.+.
T Consensus 23 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~ 102 (345)
T 3hko_A 23 ELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQY 102 (345)
T ss_dssp HHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred hhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCCe
Confidence 3457899999999999999999986 4577899998753210 0011234679999999999999999999999999999
Q ss_pred eEEEEEecCCCChHHHhccc------------------------------------------------------------
Q 042735 496 SILIYEYLKRGSLATNLSND------------------------------------------------------------ 515 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~------------------------------------------------------------ 515 (667)
.++||||+++|+|.+.+...
T Consensus 103 ~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~ 182 (345)
T 3hko_A 103 ICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALH 182 (345)
T ss_dssp EEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHH
Confidence 99999999999999887410
Q ss_pred ----cCCcccccccCCeeecCCC--ceEEecccccccccCCCC----CcccccccccccCCC--------CCCCchHHHH
Q 042735 516 ----AAAEELDISSKNVLLDLEH--KAHVSDFGIAKFLKPDSS----NWSALVGTYRYVAPD--------YRKKCDVYSF 577 (667)
Q Consensus 516 ----~~~~~~dlk~~NiLld~~~--~~kl~DFGla~~~~~~~~----~~~~~~Gt~~y~aPE--------~~~~~DV~sf 577 (667)
....|.||||+||+++.++ .+||+|||+++....... ......||+.|+||| |+.++|||||
T Consensus 183 ~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~Diwsl 262 (345)
T 3hko_A 183 YLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSA 262 (345)
T ss_dssp HHHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHH
T ss_pred HHHHCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHH
Confidence 0011339999999998776 899999999986543221 134567999999999 4568999999
Q ss_pred HHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 578 RVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 578 Gvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
||++|||+||+.||...... ... ..+.......+.+........+.+++.+||+.+|++|||+.|++++.|+
T Consensus 263 G~il~el~~g~~pf~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~hp~~ 334 (345)
T 3hko_A 263 GVLLHLLLMGAVPFPGVNDA----DTI----SQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQHPWI 334 (345)
T ss_dssp HHHHHHHHHSSCSSCCSSHH----HHH----HHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHHSHHH
T ss_pred HHHHHHHHHCCCCCCCCChH----HHH----HHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHCCCHHHHhcChhh
Confidence 99999999999998633211 111 1111112211122211222356788889999999999999999999999
Q ss_pred hhhh
Q 042735 658 SLVY 661 (667)
Q Consensus 658 ~~~~ 661 (667)
....
T Consensus 335 ~~~~ 338 (345)
T 3hko_A 335 SQFS 338 (345)
T ss_dssp HTTS
T ss_pred ccCh
Confidence 7543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=314.93 Aligned_cols=175 Identities=22% Similarity=0.250 Sum_probs=143.0
Q ss_pred cCCCCCEEECcCCccCCcc--CccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCC-ccccCCccc
Q 042735 144 IYLNLTFLDISDNNFFGEI--ASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIP-KEFGKLNSL 220 (667)
Q Consensus 144 ~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L 220 (667)
.+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+..+. +.++++|+.|++++|.+.+..+ ..+.++++|
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 4567788888888876543 66778889999999999988765444 8889999999999998887665 468888999
Q ss_pred ceeecccccccccCcccccCCCCCCeeeccCCcCC-ccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcC
Q 042735 221 TKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFS-SLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299 (667)
Q Consensus 221 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~ 299 (667)
+.|++++|.+.+..|..+.++++|++|++++|.++ +.+|..+..+++|+.|++++|++.+..|..+..+++|++|++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 99999999888888888888999999999999887 56788888889999999999988888888888899999999999
Q ss_pred CCCCCcCcccccCCcccccc
Q 042735 300 NFLGREIPSQICSMECCEVF 319 (667)
Q Consensus 300 n~l~~~ip~~~~~~~~~~~~ 319 (667)
|.+.+..|..+..++.+..+
T Consensus 504 n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 504 NQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp SCCSCCCTTTTTTCTTCCEE
T ss_pred CcCCCCCHHHhhcccCCcEE
Confidence 98887766666665555443
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=315.24 Aligned_cols=314 Identities=20% Similarity=0.213 Sum_probs=243.6
Q ss_pred CCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcc
Q 042735 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALE 82 (667)
Q Consensus 4 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~ 82 (667)
+++.|+|++|.++++.+..|.++++|++|+|++|++++..|..|+++++|++|+|++|++++..|..+.. .+|++|+|+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 5777888888887777777778888888888888877766777778888888888888777666666665 457777777
Q ss_pred cccccccCCccccCCCCccEEEeeCccccc-ccCccCCCCCCCcEEEccCCccccccchhhhc-----------------
Q 042735 83 NNHFTGNLRHNICRNGALERVIVGGNHFRG-PIPKCLRNCPNLVRISLEGNNMRGTISEAFGI----------------- 144 (667)
Q Consensus 83 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~----------------- 144 (667)
+|.+++..+..+..+.+|+.|++++|.+.+ .+|..+.++++|++|++++|.+++..+..++.
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence 777776555557777777777777777765 35777777777777777777665544333332
Q ss_pred --------------------------------------------------------------------------------
Q 042735 145 -------------------------------------------------------------------------------- 144 (667)
Q Consensus 145 -------------------------------------------------------------------------------- 144 (667)
T Consensus 189 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 268 (570)
T 2z63_A 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268 (570)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence
Q ss_pred ------------CCCCCEEECcCCccCCccCccC------------------------------------------CCCC
Q 042735 145 ------------YLNLTFLDISDNNFFGEIASNW------------------------------------------GKCP 170 (667)
Q Consensus 145 ------------l~~L~~L~L~~n~l~~~~~~~~------------------------------------------~~l~ 170 (667)
+++|+.|++++|.+.+ +|..+ ..++
T Consensus 269 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 269 YYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp EEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCC
Confidence 3344444444444321 22211 3567
Q ss_pred CCCEEEccCCcCCCCc--CccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCc-ccccCCCCCCee
Q 042735 171 KLSTLNVSMNNITRSI--PLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLP-SEIGSLTKLEFL 247 (667)
Q Consensus 171 ~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L 247 (667)
+|+.|++++|.+++.. |..+.++++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..| ..+..+++|++|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 8899999999987654 67789999999999999999875544 9999999999999999987766 578999999999
Q ss_pred eccCCcCCccchhhhhcccCCCeecCCCccCc-cccchhhhcCCCCCEEECcCCCCCCcCcccccCCcccccc
Q 042735 248 NLSTNRFSSLIPESLGNLLKLHYLDLSKYQFI-QELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEVF 319 (667)
Q Consensus 248 ~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~-~~~p~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~~~~ 319 (667)
++++|.+.+..|..+.++++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+..|..+..++.+..+
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 99999999999999999999999999999987 5799999999999999999999998888888777666655
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-34 Score=294.29 Aligned_cols=236 Identities=23% Similarity=0.313 Sum_probs=174.1
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC--ceE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR--HSI 497 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~--~~~ 497 (667)
++|...+.||+|+||.||+|+.. +++.||||++..... ....+.+.+|++++++++|||||++++++.... ..+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 85 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF---LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV 85 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG---GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccc---cchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEE
Confidence 46888899999999999999875 488999999864321 123456889999999999999999999998765 779
Q ss_pred EEEEecCCCChHHHhccccC---------------------------CcccccccCCeee----cCCCceEEeccccccc
Q 042735 498 LIYEYLKRGSLATNLSNDAA---------------------------AEELDISSKNVLL----DLEHKAHVSDFGIAKF 546 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~---------------------------~~~~dlk~~NiLl----d~~~~~kl~DFGla~~ 546 (667)
+||||+++|+|.+.+..... ..|.||||+|||+ +.++.+||+|||+++.
T Consensus 86 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~ 165 (319)
T 4euu_A 86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE 165 (319)
T ss_dssp EEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEE
T ss_pred EEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccCCCcee
Confidence 99999999999988865321 1134999999999 8888899999999987
Q ss_pred ccCCCCCcccccccccccCCC--------------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccc-
Q 042735 547 LKPDSSNWSALVGTYRYVAPD--------------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEM- 611 (667)
Q Consensus 547 ~~~~~~~~~~~~Gt~~y~aPE--------------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~- 611 (667)
...... .....||+.|+||| |+.++|||||||++|||+||+.||....................
T Consensus 166 ~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p 244 (319)
T 4euu_A 166 LEDDEQ-FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKP 244 (319)
T ss_dssp CCTTCC-BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCC
T ss_pred cCCCCc-eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCC
Confidence 654432 34467999999998 24689999999999999999999853221111111111000000
Q ss_pred ----------------cCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 612 ----------------LDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 612 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.....+............+.+++.+||+.||++|||++|+++++....+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~~ 309 (319)
T 4euu_A 245 SGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILH 309 (319)
T ss_dssp TTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHTC
T ss_pred cccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHhh
Confidence 0011222222223344567788999999999999999999999987543
|
| >4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=289.26 Aligned_cols=223 Identities=26% Similarity=0.447 Sum_probs=172.2
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|+..+.||+|+||.||+|...++..||||++..... ..+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 84 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-----SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVF 84 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-----CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-----CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEE
Confidence 57888899999999999999998888999999875322 2356899999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCC-CCc
Q 042735 501 EYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS-SNW 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~-~~~ 554 (667)
||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++...... ...
T Consensus 85 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~ 164 (269)
T 4hcu_A 85 EFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSS 164 (269)
T ss_dssp ECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHST
T ss_pred EeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEeccccccccccccccccc
Confidence 99999999988854321 1234999999999999999999999998654321 112
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
....||+.|+||| ++.++||||+||++|||+| |+.||..... ..... .......+..+... .
T Consensus 165 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~----~~~~~-~~~~~~~~~~~~~~------~ 233 (269)
T 4hcu_A 165 TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN----SEVVE-DISTGFRLYKPRLA------S 233 (269)
T ss_dssp TSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH----HHHHH-HHHTTCCCCCCTTS------C
T ss_pred cCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCH----HHHHH-HHhcCccCCCCCcC------C
Confidence 2345788899999 5779999999999999999 9999863221 11111 11111111112111 1
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..+.+++.+||+.+|++|||++|+++++....
T Consensus 234 ~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~ 265 (269)
T 4hcu_A 234 THVYQIMNHCWRERPEDRPAFSRLLRQLAEIA 265 (269)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcccCcCHHHHHHHHHHHH
Confidence 24667888999999999999999999987654
|
| >2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=315.19 Aligned_cols=243 Identities=23% Similarity=0.233 Sum_probs=179.3
Q ss_pred HHHHHHHHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEE
Q 042735 413 YVEIIRAINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCS 491 (667)
Q Consensus 413 ~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~ 491 (667)
+.+.....++|+..+.||+|+||.||+|+.. +++.||||++.+... ......+.+.+|++++.+++|||||++++++.
T Consensus 53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~-~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~ 131 (412)
T 2vd5_A 53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDM-LKRGEVSCFREERDVLVNGDRRWITQLHFAFQ 131 (412)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-HHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHh-hhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence 3344445689999999999999999999874 688999999753110 01112235889999999999999999999999
Q ss_pred eCCceEEEEEecCCCChHHHhcccc--C-----------------------CcccccccCCeeecCCCceEEeccccccc
Q 042735 492 HARHSILIYEYLKRGSLATNLSNDA--A-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKF 546 (667)
Q Consensus 492 ~~~~~~lv~ey~~~g~L~~~l~~~~--~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~ 546 (667)
+.+..|+||||+++|+|.+++.... . ..|.||||+|||+|.++++||+|||+++.
T Consensus 132 ~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~~ 211 (412)
T 2vd5_A 132 DENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLK 211 (412)
T ss_dssp CSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred eCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhhee
Confidence 9999999999999999999886421 1 11349999999999999999999999987
Q ss_pred ccCCCC-CcccccccccccCCC-------------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhcccc
Q 042735 547 LKPDSS-NWSALVGTYRYVAPD-------------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612 (667)
Q Consensus 547 ~~~~~~-~~~~~~Gt~~y~aPE-------------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~ 612 (667)
...... .....+||+.|+||| |+.++|||||||++|||+||+.||...... ...........
T Consensus 212 ~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~----~~~~~i~~~~~ 287 (412)
T 2vd5_A 212 LRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTA----ETYGKIVHYKE 287 (412)
T ss_dssp CCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHH----HHHHHHHTHHH
T ss_pred ccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHH----HHHHHHHhccc
Confidence 654432 223468999999999 467899999999999999999998643211 11111110000
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhccccCCCCC---CCHHHHHHHHHHhhhhhcc
Q 042735 613 DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESR---PTMQTITQQLLFSLVYFSY 664 (667)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~R---Pt~~ev~~~l~~~~~~~~~ 664 (667)
....+..... ...++.+++.+||. +|++| |+++||++|.||..+.|+.
T Consensus 288 ~~~~p~~~~~---~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~Hpff~~i~w~~ 338 (412)
T 2vd5_A 288 HLSLPLVDEG---VPEEARDFIQRLLC-PPETRLGRGGAGDFRTHPFFFGLDWDG 338 (412)
T ss_dssp HCCCC----C---CCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTSGGGTTCCSTT
T ss_pred CcCCCccccC---CCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcCCCcCCCCHHH
Confidence 0111111011 11246678889999 99988 6999999999999887764
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=329.21 Aligned_cols=303 Identities=24% Similarity=0.284 Sum_probs=261.6
Q ss_pred CCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccC-CccccCCCCCCeeeccccccceeCCCCCcc-cccCEE
Q 042735 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSL-PSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVL 79 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L 79 (667)
.++|+.|+|++|.|+++.|..|.++++|++|+|++|.+.+.+ |.+|.++++|++|+|++|.+++..|..++. .+|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 468999999999999999999999999999999999655444 889999999999999999999988999987 569999
Q ss_pred EcccccccccCCcc--ccCCCCccEEEeeCcccccccC-ccCCCCCCCcEEEccCCccccccchhhhcC--CCCCEEECc
Q 042735 80 ALENNHFTGNLRHN--ICRNGALERVIVGGNHFRGPIP-KCLRNCPNLVRISLEGNNMRGTISEAFGIY--LNLTFLDIS 154 (667)
Q Consensus 80 ~L~~n~l~~~~~~~--~~~~~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l--~~L~~L~L~ 154 (667)
+|++|.+++.++.. +..+++|+.|++++|.+.+..+ ..++++++|++|+|++|.+++..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999999866655 8899999999999999988755 579999999999999999999888888877 899999999
Q ss_pred CCccCCccCccCCCCCC------CCEEEccCCcCCCCcCccccC------------------------------------
Q 042735 155 DNNFFGEIASNWGKCPK------LSTLNVSMNNITRSIPLEIGN------------------------------------ 192 (667)
Q Consensus 155 ~n~l~~~~~~~~~~l~~------L~~L~L~~n~l~~~~p~~~~~------------------------------------ 192 (667)
+|.+.+..|..+..+++ |+.|++++|.+++..+..+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 99998888877776665 899999998776655543321
Q ss_pred --CCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCe
Q 042735 193 --LSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHY 270 (667)
Q Consensus 193 --l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 270 (667)
.++|+.|+|++|.+.+..+..|..+++|+.|+|++|.+.+..|..|.++++|++|+|++|.+++..|..+.++++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 257888999988888888888888999999999999888888888888999999999999988888888888889999
Q ss_pred ecCCCccCccccchhhhcCCCCCEEECcCCCCCC
Q 042735 271 LDLSKYQFIQELPKELGKLVQLSELELSHNFLGR 304 (667)
Q Consensus 271 L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~ 304 (667)
|++++|++....+..+..+++|++|++++|.+.+
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 9999888777667778888889999888888753
|
| >3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=293.60 Aligned_cols=237 Identities=20% Similarity=0.301 Sum_probs=169.7
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|+.. +++.||||++...... ....+.+.+|++++++++|||||++++++.+.+..++|
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 79 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD--EGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLV 79 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSS--TTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCc--CCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEE
Confidence 57888999999999999999874 5788999998654322 22346788999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcc-cc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSN-DA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~-~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||++++ +.+.+.. .. ...|.||||+||+++.++.+||+|||+++.........
T Consensus 80 ~e~~~~~-l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~ 158 (292)
T 3o0g_A 80 FEFCDQD-LKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCY 158 (292)
T ss_dssp EECCSEE-HHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSCC
T ss_pred EecCCCC-HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecCCccccc
Confidence 9999864 4333321 11 12245999999999999999999999998765544445
Q ss_pred ccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCC-hhhhh----------hhhccccC---
Q 042735 555 SALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPS-PSVIN----------MRLDEMLD--- 613 (667)
Q Consensus 555 ~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~-~~~~~----------~~~~~~~~--- 613 (667)
....||+.|+||| |+.++|||||||++|||+||+.|+......... ..... .......+
T Consensus 159 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (292)
T 3o0g_A 159 SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKP 238 (292)
T ss_dssp CSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCC
T ss_pred cCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccccc
Confidence 5678999999999 577899999999999999998885311100000 00000 00000000
Q ss_pred -CCCCCC---CCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 614 -PRLPPP---SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 614 -~~~~~~---~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
+..+.. ..........+.+++.+||+.||++|||++|++++.||...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~ 289 (292)
T 3o0g_A 239 YPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSDF 289 (292)
T ss_dssp CCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTC
T ss_pred cccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcCcccccC
Confidence 000000 00000112346688889999999999999999999998653
|
| >2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-35 Score=304.92 Aligned_cols=232 Identities=21% Similarity=0.321 Sum_probs=177.4
Q ss_pred HHcCCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCce
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~ 496 (667)
..++|+..+.||+|+||.||+|+... ++.||||++...... .....+.+.+|.+++..+ +||||+++++++.+.+..
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~-~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~ 96 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVI-QDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRL 96 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHH-HTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhh-cchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEE
Confidence 35789999999999999999998764 778999987542110 112245688999999988 799999999999999999
Q ss_pred EEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
|+||||+++|+|.+++.... ...|.||||+|||++.++.+||+|||+++.......
T Consensus 97 ~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~ 176 (353)
T 2i0e_A 97 YFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGV 176 (353)
T ss_dssp EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC
T ss_pred EEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCCcccccccCCc
Confidence 99999999999998875421 122459999999999999999999999986544444
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....+||+.|+||| |+.++|||||||++|||++|+.||..... .......... ....+...+
T Consensus 177 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~----~~~~~~i~~~--~~~~p~~~s----- 245 (353)
T 2i0e_A 177 TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE----DELFQSIMEH--NVAYPKSMS----- 245 (353)
T ss_dssp CBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHHC--CCCCCTTSC-----
T ss_pred ccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCH----HHHHHHHHhC--CCCCCCCCC-----
Confidence 455678999999999 67889999999999999999999863221 1111111111 122222211
Q ss_pred HHHHHHHHHhccccCCCCCCC-----HHHHHHHHHHhhhhhc
Q 042735 627 LISIMEVAFSCLDVSPESRPT-----MQTITQQLLFSLVYFS 663 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt-----~~ev~~~l~~~~~~~~ 663 (667)
..+.+++.+||+.+|++||+ ++||+++.||....|+
T Consensus 246 -~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h~~f~~~~w~ 286 (353)
T 2i0e_A 246 -KEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWE 286 (353)
T ss_dssp -HHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTSGGGTTCCHH
T ss_pred -HHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCccccCCCHH
Confidence 24667888999999999994 6999999999876654
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=289.40 Aligned_cols=224 Identities=26% Similarity=0.403 Sum_probs=159.0
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|+..+.||+|+||.||+|... +..+|||++............+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM 85 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence 57888999999999999999875 77899999865433222333567899999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc-----------------------C---CcccccccCCeeecC--------CCceEEeccccccc
Q 042735 501 EYLKRGSLATNLSNDA-----------------------A---AEELDISSKNVLLDL--------EHKAHVSDFGIAKF 546 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~-----------------------~---~~~~dlk~~NiLld~--------~~~~kl~DFGla~~ 546 (667)
||+++|+|.+.+.... . ..|.||||+||+++. ++.+||+|||+++.
T Consensus 86 e~~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~ 165 (271)
T 3dtc_A 86 EFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLARE 165 (271)
T ss_dssp ECCTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC---
T ss_pred EcCCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcccc
Confidence 9999999988764321 1 236699999999986 77899999999986
Q ss_pred ccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCC
Q 042735 547 LKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620 (667)
Q Consensus 547 ~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (667)
..... .....||+.|+||| ++.++||||||+++|||+||+.||..... ................+...
T Consensus 166 ~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~ 239 (271)
T 3dtc_A 166 WHRTT--KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDG----LAVAYGVAMNKLALPIPSTC 239 (271)
T ss_dssp ------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCH----HHHHHHHHTSCCCCCCCTTC
T ss_pred ccccc--ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHhhhcCCCCCCCCccc
Confidence 54332 22457999999999 67789999999999999999999863221 11111111111111122211
Q ss_pred CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 621 ~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
+ ..+.+++.+||+.+|++|||+.|++++|..
T Consensus 240 ~------~~~~~li~~~l~~~p~~Rps~~e~l~~L~~ 270 (271)
T 3dtc_A 240 P------EPFAKLMEDCWNPDPHSRPSFTNILDQLTT 270 (271)
T ss_dssp C------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHC
T ss_pred C------HHHHHHHHHHhcCCcccCcCHHHHHHHHhc
Confidence 1 246678889999999999999999999863
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=303.30 Aligned_cols=228 Identities=20% Similarity=0.276 Sum_probs=158.7
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|+.. +++.||||++.... ..+.+.+|++++++++|||||++++++.+.+..++
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 125 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV------DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISL 125 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------------CHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch------hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEE
Confidence 357888999999999999999875 47789999986432 23568899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC------------------------CcccccccCCeeecC---CCceEEecccccccccCCC
Q 042735 499 IYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDL---EHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~---~~~~kl~DFGla~~~~~~~ 551 (667)
||||+++|+|.+.+..... ..|.||||+|||++. ++.+||+|||+++......
T Consensus 126 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~ 205 (349)
T 2w4o_A 126 VLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQV 205 (349)
T ss_dssp EECCCCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC---------
T ss_pred EEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccccCccc
Confidence 9999999999988764321 123499999999975 8999999999998764332
Q ss_pred CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
.....+||+.|+||| |+.++|||||||++|||+||+.||...... .... ..+.........+....
T Consensus 206 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~---~~~~----~~i~~~~~~~~~~~~~~ 277 (349)
T 2w4o_A 206 -LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGD---QFMF----RRILNCEYYFISPWWDE 277 (349)
T ss_dssp --------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCH---HHHH----HHHHTTCCCCCTTTTTT
T ss_pred -ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCccc---HHHH----HHHHhCCCccCCchhhh
Confidence 234568999999999 678999999999999999999997532210 0011 11111111111111111
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
....+.+++.+||+.||++|||+.|++++.|+....
T Consensus 278 ~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~ 313 (349)
T 2w4o_A 278 VSLNAKDLVRKLIVLDPKKRLTTFQALQHPWVTGKA 313 (349)
T ss_dssp SCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTTSTT
T ss_pred CCHHHHHHHHHHccCChhhCcCHHHHhcCcccCCCc
Confidence 223566888899999999999999999999987544
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=287.33 Aligned_cols=222 Identities=27% Similarity=0.458 Sum_probs=171.0
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|+..+.||+|+||.||+|+..++..||||++..... ..+++.+|++++.+++||||+++++++.+....++||
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 82 (268)
T 3sxs_A 8 EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-----SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVT 82 (268)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEE
T ss_pred hheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-----cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEE
Confidence 57888899999999999999998888899999865322 2356899999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCC-Cc
Q 042735 501 EYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-NW 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~~ 554 (667)
||+++|+|.+.+..... ..|.||||+||+++.++.+||+|||+++....... ..
T Consensus 83 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~ 162 (268)
T 3sxs_A 83 EYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSS 162 (268)
T ss_dssp ECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEEC
T ss_pred EccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCccceecchhhhhcc
Confidence 99999999987754211 12349999999999999999999999987654321 12
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
....||+.|+||| ++.++||||||+++|||+| |+.||..... ...............+...+
T Consensus 163 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~------ 231 (268)
T 3sxs_A 163 VGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTN-----SEVVLKVSQGHRLYRPHLAS------ 231 (268)
T ss_dssp CSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCH-----HHHHHHHHTTCCCCCCTTSC------
T ss_pred cCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccCh-----HHHHHHHHcCCCCCCCCcCh------
Confidence 2345677899999 5789999999999999999 9999863321 11111111111111111111
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
..+.+++.+||+.+|++|||+.|++++|...
T Consensus 232 ~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l 262 (268)
T 3sxs_A 232 DTIYQIMYSCWHELPEKRPTFQQLLSSIEPL 262 (268)
T ss_dssp HHHHHHHHHTTCSSGGGSCCHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCChhhCcCHHHHHHHHHHh
Confidence 2466788899999999999999999998764
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=305.20 Aligned_cols=225 Identities=21% Similarity=0.296 Sum_probs=165.8
Q ss_pred cCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEe
Q 042735 424 DAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEY 502 (667)
Q Consensus 424 ~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey 502 (667)
...+.||+|+||.||+|.. .++..||||++.... ....+.|.+|++++++++|||||++++++.+.+..++||||
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~ 167 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRG----MKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEY 167 (373)
T ss_dssp EEEEECC-----CEEEEEETTTCCEEEEEEEECCS----HHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccc----cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeC
Confidence 3456799999999999986 568899999986532 23456799999999999999999999999999999999999
Q ss_pred cCCCChHHHhcccc-------------------------CCcccccccCCeee--cCCCceEEecccccccccCCCCCcc
Q 042735 503 LKRGSLATNLSNDA-------------------------AAEELDISSKNVLL--DLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 503 ~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLl--d~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
+++|+|.+.+.... ...|.||||+|||+ +.++.+||+|||+++...... ...
T Consensus 168 ~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~-~~~ 246 (373)
T 2x4f_A 168 VDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE-KLK 246 (373)
T ss_dssp CTTCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC-BCC
T ss_pred CCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc-ccc
Confidence 99999988774321 11234999999999 577899999999999765433 234
Q ss_pred cccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 556 ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
..+||+.|+||| |+.++|||||||++|||+||+.||...... ... ..+.......+..........
T Consensus 247 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~----~~~----~~i~~~~~~~~~~~~~~~~~~ 318 (373)
T 2x4f_A 247 VNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDA----ETL----NNILACRWDLEDEEFQDISEE 318 (373)
T ss_dssp CCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHH----HHH----HHHHHTCCCSCSGGGTTSCHH
T ss_pred cccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH----HHH----HHHHhccCCCChhhhccCCHH
Confidence 457999999999 567899999999999999999998633211 111 111111111111111112235
Q ss_pred HHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 630 IMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
+.+++.+||+.||++|||++|++++.|+....
T Consensus 319 ~~~li~~~L~~dp~~Rps~~e~l~hp~~~~~~ 350 (373)
T 2x4f_A 319 AKEFISKLLIKEKSWRISASEALKHPWLSDHK 350 (373)
T ss_dssp HHHHHHTTSCSSGGGSCCHHHHHHSHHHHCHH
T ss_pred HHHHHHHHcCCChhhCCCHHHHhcCcCcCCCc
Confidence 67888899999999999999999999987543
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=302.03 Aligned_cols=227 Identities=22% Similarity=0.356 Sum_probs=171.2
Q ss_pred cCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
++|...+.||+|+||.||+|.+. ++..||||++..... ......+.+|+.++++++|||||++++++.+..
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~ 147 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS---EQDELDFLMEALIISKFNHQNIVRCIGVSLQSL 147 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCC---HHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccC---hhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence 57888899999999999999853 356799999864322 234457999999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhcccc-------------------------------CCcccccccCCeeecCCC---ceEEec
Q 042735 495 HSILIYEYLKRGSLATNLSNDA-------------------------------AAEELDISSKNVLLDLEH---KAHVSD 540 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~-------------------------------~~~~~dlk~~NiLld~~~---~~kl~D 540 (667)
..++||||+++|+|.+++.... ...|.||||+|||++.++ .+||+|
T Consensus 148 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~D 227 (367)
T 3l9p_A 148 PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGD 227 (367)
T ss_dssp SCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECC
T ss_pred CCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceEEECC
Confidence 9999999999999998875421 012349999999999555 599999
Q ss_pred ccccccccCCC--CCcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccc
Q 042735 541 FGIAKFLKPDS--SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEM 611 (667)
Q Consensus 541 FGla~~~~~~~--~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~ 611 (667)
||+++...... .......||+.|+||| |+.++|||||||++|||+| |+.||..... ..... .+...
T Consensus 228 FG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~----~~~~~-~i~~~ 302 (367)
T 3l9p_A 228 FGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN----QEVLE-FVTSG 302 (367)
T ss_dssp CHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH----HHHHH-HHHTT
T ss_pred CccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH----HHHHH-HHHcC
Confidence 99998643221 2233457899999999 6789999999999999998 9999863221 11111 11111
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 612 LDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.....+... ...+.+++.+||+.+|++|||+.||++++++....
T Consensus 303 ~~~~~~~~~------~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~ 346 (367)
T 3l9p_A 303 GRMDPPKNC------PGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 346 (367)
T ss_dssp CCCCCCTTC------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CCCCCCccC------CHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence 111111111 12466788899999999999999999999887543
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=293.20 Aligned_cols=229 Identities=22% Similarity=0.323 Sum_probs=166.6
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|+. .++..+|+|++...... .....+.|.+|+.++++++|||||++++++.+.+..++|
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPRE-KEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSC-CHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccc-cHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 4688889999999999999986 46788999988543322 234456799999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC-Cc
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-NW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~~ 554 (667)
|||+++|+|.+++.... ...|.||||+||+++.++.+||+|||+++....... ..
T Consensus 90 ~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~ 169 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQT 169 (294)
T ss_dssp EECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC--------
T ss_pred EeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCCcccccccccccc
Confidence 99999999998775422 122459999999999999999999999987654322 23
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCC-CchHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS-PDVQGKL 627 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 627 (667)
....||+.|+||| ++.++|||||||++|||+||+.||...... ..... . +....+... .......
T Consensus 170 ~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~----~~~~~---~-~~~~~~~~~~~~~~~~~ 241 (294)
T 4eqm_A 170 NHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAV----SIAIK---H-IQDSVPNVTTDVRKDIP 241 (294)
T ss_dssp -----CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHH----HHHHH---H-HSSCCCCHHHHSCTTSC
T ss_pred CccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH----HHHHH---H-hhccCCCcchhcccCCC
Confidence 3467999999999 578999999999999999999998643210 00000 0 111111000 0000112
Q ss_pred HHHHHHHHhccccCCCCCC-CHHHHHHHHHHh
Q 042735 628 ISIMEVAFSCLDVSPESRP-TMQTITQQLLFS 658 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RP-t~~ev~~~l~~~ 658 (667)
..+.+++.+||+.||++|| +++++.+.+...
T Consensus 242 ~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~ 273 (294)
T 4eqm_A 242 QSLSNVILRATEKDKANRYKTIQEMKDDLSSV 273 (294)
T ss_dssp HHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcCCHhHccccHHHHHHHHHHH
Confidence 2466788899999999998 888888877654
|
| >1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=302.65 Aligned_cols=228 Identities=21% Similarity=0.277 Sum_probs=176.9
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|+.. +++.||||++..... ......+.+.+|++++++++|||||++++++.+.+..++
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l 118 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKV-VKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM 118 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-HHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHh-ccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEE
Confidence 368899999999999999999875 688999998753211 011234578899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||+++|+|.+++.... ...|.||||+|||++.++.+||+|||+++..... .
T Consensus 119 v~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~---~ 195 (350)
T 1rdq_E 119 VMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR---T 195 (350)
T ss_dssp EEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC---B
T ss_pred EEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEcccccceeccCC---c
Confidence 999999999998875421 1124499999999999999999999999876432 2
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
...+||+.|+||| |+.++|||||||++|||+||+.||..... .......... ...++...+ .
T Consensus 196 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~----~~~~~~i~~~--~~~~p~~~~------~ 263 (350)
T 1rdq_E 196 WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP----IQIYEKIVSG--KVRFPSHFS------S 263 (350)
T ss_dssp CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHHC--CCCCCTTCC------H
T ss_pred ccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCH----HHHHHHHHcC--CCCCCCCCC------H
Confidence 3568999999999 57899999999999999999999853221 1111111111 112222222 2
Q ss_pred HHHHHHHhccccCCCCCCC-----HHHHHHHHHHhhhhhc
Q 042735 629 SIMEVAFSCLDVSPESRPT-----MQTITQQLLFSLVYFS 663 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt-----~~ev~~~l~~~~~~~~ 663 (667)
.+.+++.+||+.||++||+ ++||+++.||....|.
T Consensus 264 ~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h~~f~~~~w~ 303 (350)
T 1rdq_E 264 DLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWI 303 (350)
T ss_dssp HHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTCCHH
T ss_pred HHHHHHHHHhhcCHHhccCCccCCHHHHHhCcCcCCCCHH
Confidence 4667888999999999999 9999999999876654
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=302.87 Aligned_cols=228 Identities=25% Similarity=0.404 Sum_probs=171.8
Q ss_pred HHcCCcCcceeecccCeEEEEEEe------CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEE
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCS 491 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~------~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~ 491 (667)
..++|...+.||+|+||.||+|++ .+++.||||++..... ....+.+.+|++++.++ +|||||+++|++.
T Consensus 20 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~ 96 (359)
T 3vhe_A 20 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLLGACT 96 (359)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred cccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCC---HHHHHHHHHHHHHHHhhcCCcceeeeeeeee
Confidence 457899999999999999999973 2357899999875422 23456799999999999 7999999999998
Q ss_pred eCCc-eEEEEEecCCCChHHHhccccC-----------------------------------------------------
Q 042735 492 HARH-SILIYEYLKRGSLATNLSNDAA----------------------------------------------------- 517 (667)
Q Consensus 492 ~~~~-~~lv~ey~~~g~L~~~l~~~~~----------------------------------------------------- 517 (667)
+.+. .++||||+++|+|.+++.....
T Consensus 97 ~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (359)
T 3vhe_A 97 KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDV 176 (359)
T ss_dssp STTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-----------------------------------------------
T ss_pred cCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchh
Confidence 7654 8999999999999988864321
Q ss_pred -------------------------------------CcccccccCCeeecCCCceEEecccccccccCCCC--Cccccc
Q 042735 518 -------------------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS--NWSALV 558 (667)
Q Consensus 518 -------------------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~--~~~~~~ 558 (667)
..|.||||+|||++.++.+||+|||+++....... ......
T Consensus 177 ~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~ 256 (359)
T 3vhe_A 177 EEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDAR 256 (359)
T ss_dssp -------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CE
T ss_pred hhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccC
Confidence 11339999999999999999999999986643322 233467
Q ss_pred ccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHH
Q 042735 559 GTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIM 631 (667)
Q Consensus 559 Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (667)
||+.|+||| |+.++|||||||++|||+| |+.||...... . ..............+...+ ..+.
T Consensus 257 ~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~---~-~~~~~~~~~~~~~~~~~~~------~~l~ 326 (359)
T 3vhe_A 257 LPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID---E-EFCRRLKEGTRMRAPDYTT------PEMY 326 (359)
T ss_dssp ECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS---H-HHHHHHHHTCCCCCCTTCC------HHHH
T ss_pred CCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchh---H-HHHHHHHcCCCCCCCCCCC------HHHH
Confidence 899999999 6789999999999999999 99998633211 1 1111111111122222221 2466
Q ss_pred HHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 632 EVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 632 ~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
+++.+||+.+|++|||++|++++|....
T Consensus 327 ~li~~~l~~dP~~Rps~~ell~~L~~~~ 354 (359)
T 3vhe_A 327 QTMLDCWHGEPSQRPTFSELVEHLGNLL 354 (359)
T ss_dssp HHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHccCChhhCCCHHHHHHHHHHHH
Confidence 7888999999999999999999998654
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=310.06 Aligned_cols=306 Identities=21% Similarity=0.233 Sum_probs=232.5
Q ss_pred CCCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccce-eCCCCCcc-cccCE
Q 042735 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSG-SIPPSVGN-LMLTV 78 (667)
Q Consensus 1 ~L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~-~~L~~ 78 (667)
++++|+.|+|++|+++++.|..|.++++|++|+|++|+|+ .+|.. .+++|++|+|++|++++ .+|..++. .+|++
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~ 119 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence 4789999999999999988999999999999999999998 46665 79999999999999986 46777877 46999
Q ss_pred EEcccccccccCCccccCCCCc--cEEEeeCccc--ccccCccCCCCC--------------------------------
Q 042735 79 LALENNHFTGNLRHNICRNGAL--ERVIVGGNHF--RGPIPKCLRNCP-------------------------------- 122 (667)
Q Consensus 79 L~L~~n~l~~~~~~~~~~~~~L--~~L~l~~n~~--~~~~p~~l~~l~-------------------------------- 122 (667)
|+|++|.+++ ..+..+.+| +.|++++|.+ .+..|..+..+.
T Consensus 120 L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 196 (520)
T 2z7x_B 120 LGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196 (520)
T ss_dssp EEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECC
T ss_pred EEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecc
Confidence 9999998875 234445555 7777777766 555554444422
Q ss_pred ---------------------------------------------------CCcEEEccCCccccccchhh-----hcCC
Q 042735 123 ---------------------------------------------------NLVRISLEGNNMRGTISEAF-----GIYL 146 (667)
Q Consensus 123 ---------------------------------------------------~L~~L~L~~n~~~~~~~~~~-----~~l~ 146 (667)
+|+.|++++|++++.+|..+ +.++
T Consensus 197 l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~ 276 (520)
T 2z7x_B 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276 (520)
T ss_dssp EEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC
T ss_pred ccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCc
Confidence 56666677777766666655 5555
Q ss_pred CCCEEECcCCccCCccC-------------------------cc-CCCCCCCCEEEccCCcCCCCcCccccCCCCcCeee
Q 042735 147 NLTFLDISDNNFFGEIA-------------------------SN-WGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFD 200 (667)
Q Consensus 147 ~L~~L~L~~n~l~~~~~-------------------------~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 200 (667)
+|+.+++++|.+ .+| .. +..+++|++|++++|.+++..|..+.++++|++|+
T Consensus 277 ~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 354 (520)
T 2z7x_B 277 ALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354 (520)
T ss_dssp EEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEE
T ss_pred eeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEE
Confidence 555555544444 222 11 25788899999999999888888888899999999
Q ss_pred ccCCcccc--cCCccccCCcccceeecccccccccCcc-cccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCcc
Q 042735 201 LSLNHIVG--KIPKEFGKLNSLTKLILRGNQLIGHLPS-EIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQ 277 (667)
Q Consensus 201 L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~ 277 (667)
+++|.+.+ .+|..++.+++|+.|++++|.+.+.+|. .+..+++|++|++++|.+++..|..+. ++|+.|++++|+
T Consensus 355 L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~ 432 (520)
T 2z7x_B 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK 432 (520)
T ss_dssp CCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC
T ss_pred ccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc
Confidence 99998876 4566788889999999999998875555 478888999999999998877776654 688999999888
Q ss_pred CccccchhhhcCCCCCEEECcCCCCCCcCccc-ccCCccccc
Q 042735 278 FIQELPKELGKLVQLSELELSHNFLGREIPSQ-ICSMECCEV 318 (667)
Q Consensus 278 ~~~~~p~~l~~l~~L~~L~l~~n~l~~~ip~~-~~~~~~~~~ 318 (667)
+. .+|..+..+++|++|++++|.+. .+|.. +..+..+..
T Consensus 433 l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 433 IK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQK 472 (520)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccE
Confidence 66 78888888899999999999886 56654 444444433
|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-35 Score=315.19 Aligned_cols=231 Identities=21% Similarity=0.319 Sum_probs=168.6
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|+. .++..||||++...... .......+.+|++++++++|||||++++++.+.+..++
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l 225 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIV-AKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCF 225 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC--------------CCCCCSCTTSCCEEEEEEETTEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhh-hhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEE
Confidence 46799999999999999999986 56889999987532110 11223567899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccc-------------------------cCCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 499 IYEYLKRGSLATNLSND-------------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~-------------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
||||+++|+|.+.+... ....|.||||+|||++.++.+||+|||+|+........
T Consensus 226 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~ 305 (446)
T 4ejn_A 226 VMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGAT 305 (446)
T ss_dssp EECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC----
T ss_pred EEeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCCCEEEccCCCceeccCCCcc
Confidence 99999999997765321 22345699999999999999999999999865444444
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
....+||+.|+||| |+.++|||||||++|||+||+.||..... .......... ....+...+
T Consensus 306 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~----~~~~~~i~~~--~~~~p~~~~------ 373 (446)
T 4ejn_A 306 MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH----EKLFELILME--EIRFPRTLG------ 373 (446)
T ss_dssp -CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHHC--CCCCCTTSC------
T ss_pred cccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH----HHHHHHHHhC--CCCCCccCC------
Confidence 55678999999999 68899999999999999999999853221 1111111111 122222222
Q ss_pred HHHHHHHHhccccCCCCCC-----CHHHHHHHHHHhhhhhc
Q 042735 628 ISIMEVAFSCLDVSPESRP-----TMQTITQQLLFSLVYFS 663 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~~ 663 (667)
..+.+++.+||+.||++|| |++|+++|.||....|.
T Consensus 374 ~~~~~li~~~L~~dP~~R~~~~~~t~~ell~hp~f~~~~~~ 414 (446)
T 4ejn_A 374 PEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQ 414 (446)
T ss_dssp HHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCCHH
T ss_pred HHHHHHHHHHcccCHHHhCCCCCCCHHHHHhCccccCCCHH
Confidence 2466788899999999999 99999999999876554
|
| >3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=300.01 Aligned_cols=225 Identities=25% Similarity=0.292 Sum_probs=161.3
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|+.. +++.||||++..... ..+.+.+|+.++++++|||||++++++.+.+..++|
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 94 (361)
T 3uc3_A 20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-----IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAII 94 (361)
T ss_dssp TTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-----SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred CcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-----ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEE
Confidence 57889999999999999999875 688999999865322 124588999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCc--eEEecccccccccCCCCC
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHK--AHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~--~kl~DFGla~~~~~~~~~ 553 (667)
|||+++|+|.+.+.... ...|.||||+|||++.++. +||+|||+++...... .
T Consensus 95 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~-~ 173 (361)
T 3uc3_A 95 MEYASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHS-Q 173 (361)
T ss_dssp EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC---------
T ss_pred EEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCccccccccC-C
Confidence 99999999988774321 1224599999999987765 9999999998543222 2
Q ss_pred cccccccccccCCC------CCC-CchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCC--CCCCCCchH
Q 042735 554 WSALVGTYRYVAPD------YRK-KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPR--LPPPSPDVQ 624 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~-~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 624 (667)
....+||+.|+||| |.. ++|||||||++|||+||+.||............. ..+.... .+....
T Consensus 174 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--- 246 (361)
T 3uc3_A 174 PKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTI----QRILSVKYSIPDDIR--- 246 (361)
T ss_dssp -------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHH----HHHHTTCCCCCTTSC---
T ss_pred CCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHH----HHHhcCCCCCCCcCC---
Confidence 33467999999999 333 4899999999999999999986433211111111 1111111 111111
Q ss_pred HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
....+.+++.+||+.+|++|||++|++++.||..
T Consensus 247 -~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~ 280 (361)
T 3uc3_A 247 -ISPECCHLISRIFVADPATRISIPEIKTHSWFLK 280 (361)
T ss_dssp -CCHHHHHHHHHHSCSCTTTSCCHHHHHTSHHHHT
T ss_pred -CCHHHHHHHHHHccCChhHCcCHHHHHhCcchhc
Confidence 1124667888999999999999999999999954
|
| >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=315.62 Aligned_cols=235 Identities=20% Similarity=0.273 Sum_probs=178.7
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|...+.||+|+||.||+|+.. +++.||+|++..... ......+.+.+|++++++++|||||++++++.+....|+
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~-~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~l 262 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRL-KKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCL 262 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHH-HHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHh-hhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEE
Confidence 367888899999999999999875 588999999854211 011223568899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc-----C-----------------------CcccccccCCeeecCCCceEEecccccccccCC
Q 042735 499 IYEYLKRGSLATNLSNDA-----A-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~-----~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
||||+++|+|.+++.... . ..|.||||+|||++.+|.+||+|||+++.....
T Consensus 263 VmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~ 342 (543)
T 3c4z_A 263 VMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAG 342 (543)
T ss_dssp EECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecceeeeccCC
Confidence 999999999998875421 1 113499999999999999999999999977655
Q ss_pred CCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchH
Q 042735 551 SSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624 (667)
Q Consensus 551 ~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (667)
.......+||+.|+||| |+.++|||||||++|||+||+.||................... ....+...+
T Consensus 343 ~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~--~~~~p~~~s--- 417 (543)
T 3c4z_A 343 QTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQ--AVTYPDKFS--- 417 (543)
T ss_dssp CCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHC--CCCCCTTSC---
T ss_pred CcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhc--ccCCCcccC---
Confidence 44445568999999999 6789999999999999999999986432211111111111111 112222221
Q ss_pred HHHHHHHHHHHhccccCCCCCCCH-----HHHHHHHHHhhhhhc
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTM-----QTITQQLLFSLVYFS 663 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~-----~ev~~~l~~~~~~~~ 663 (667)
..+.+++.+||+.||++||++ ++|+++.||..+.|.
T Consensus 418 ---~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~Hpff~~i~w~ 458 (543)
T 3c4z_A 418 ---PASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWR 458 (543)
T ss_dssp ---HHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTSGGGTTCCHH
T ss_pred ---HHHHHHHHHhccCCHhHCCCCcccCHHHHHcCccccCCCHH
Confidence 245678889999999999964 899999999876554
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-34 Score=293.40 Aligned_cols=239 Identities=20% Similarity=0.329 Sum_probs=169.1
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|... +++.+|||++..... .....+.+.+|++++++++||||+++++++.+.+..++
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l 79 (311)
T 4agu_A 2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESED--DPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHL 79 (311)
T ss_dssp -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC---HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeecccc--chHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEE
Confidence 367889999999999999999875 488999998865432 23345678899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||+++++|.+.+.... ...|.||||+||+++.++.+||+|||+++.........
T Consensus 80 v~e~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~ 159 (311)
T 4agu_A 80 VFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYY 159 (311)
T ss_dssp EEECCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC------
T ss_pred EEEeCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCccccc
Confidence 999999999987765321 11244999999999999999999999998766444444
Q ss_pred ccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh------------hhcccc-CC
Q 042735 555 SALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM------------RLDEML-DP 614 (667)
Q Consensus 555 ~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~------------~~~~~~-~~ 614 (667)
....||+.|+||| |+.++|||||||++|||+||+.||............... ...... ..
T Consensus 160 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (311)
T 4agu_A 160 DDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGV 239 (311)
T ss_dssp ------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTC
T ss_pred CCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccC
Confidence 5568999999999 477899999999999999999998633211000000000 000000 00
Q ss_pred CCCCCCC--ch----HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 615 RLPPPSP--DV----QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 615 ~~~~~~~--~~----~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..+.+.. .. ......+.+++.+||+.||++|||++|++++.||...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~ 291 (311)
T 4agu_A 240 KIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHHPYFENI 291 (311)
T ss_dssp CCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTSGGGTTC
T ss_pred cCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcChHHHhc
Confidence 1111100 00 0112346788899999999999999999999998754
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=300.42 Aligned_cols=235 Identities=22% Similarity=0.352 Sum_probs=176.7
Q ss_pred HHHHHHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCch----HHhHHHHHHHHHHHHhc-CCCCeeEEEE
Q 042735 415 EIIRAINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQ----IADQKEFFAEIEALTKI-RHRNIVKFYG 488 (667)
Q Consensus 415 ~~~~~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~----~~~~~~~~~E~~~l~~l-~H~niv~~~g 488 (667)
......++|+..+.||+|+||.||+|... +|+.||||++........ ....+.+.+|++++.++ +||||+++++
T Consensus 88 ~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~ 167 (365)
T 2y7j_A 88 AAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLID 167 (365)
T ss_dssp HHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEE
T ss_pred hhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEE
Confidence 33445577999999999999999999875 688999998765332111 12245688999999999 7999999999
Q ss_pred EEEeCCceEEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEeccccc
Q 042735 489 FCSHARHSILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIA 544 (667)
Q Consensus 489 ~~~~~~~~~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla 544 (667)
++......++||||+++|+|.+++.... ...|.||||+||+++.++.+||+|||++
T Consensus 168 ~~~~~~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~ 247 (365)
T 2y7j_A 168 SYESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFS 247 (365)
T ss_dssp EEEBSSEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred EEeeCCEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEecCcc
Confidence 9999999999999999999988775321 1123499999999999999999999999
Q ss_pred ccccCCCCCcccccccccccCCC------------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhcccc
Q 042735 545 KFLKPDSSNWSALVGTYRYVAPD------------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612 (667)
Q Consensus 545 ~~~~~~~~~~~~~~Gt~~y~aPE------------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~ 612 (667)
+...... .....+||+.|+||| |+.++|||||||++|||+||+.||..... ..... .+.
T Consensus 248 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~----~~~~~----~i~ 318 (365)
T 2y7j_A 248 CHLEPGE-KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQ----ILMLR----MIM 318 (365)
T ss_dssp EECCTTC-CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHH----HHH
T ss_pred cccCCCc-ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCH----HHHHH----HHH
Confidence 8765433 234578999999999 35689999999999999999999853221 01111 111
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 613 DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
........+........+.+++.+||+.||++|||++|++++.||.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~f~ 364 (365)
T 2y7j_A 319 EGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQHPFFE 364 (365)
T ss_dssp HTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGC
T ss_pred hCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCcccC
Confidence 1111111111111223567888899999999999999999998874
|
| >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-35 Score=306.31 Aligned_cols=231 Identities=23% Similarity=0.326 Sum_probs=168.9
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHH-HHhcCCCCeeEEEEEEEeCCceE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEA-LTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~-l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
.++|+..+.||+|+||.||+|+.. ++..+|||++...... .....+.+.+|..+ ++.++|||||++++++.+.+..|
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~-~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~ 115 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAIL-KKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLY 115 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC--------------CCBCCCCCTTBCCEEEEEECSSEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhh-hhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEE
Confidence 368999999999999999999875 4778999998653221 11233457778776 57789999999999999999999
Q ss_pred EEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 498 LIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
+||||+++|+|.+++.... ...|.||||+|||++.++++||+|||+++........
T Consensus 116 lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~~ 195 (373)
T 2r5t_A 116 FVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNST 195 (373)
T ss_dssp EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCCC
T ss_pred EEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEeeCccccccccCCCc
Confidence 9999999999988775421 1224599999999999999999999999875444444
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
....+||+.|+||| |+.++|||||||++|||++|+.||..... .......... ....++..+
T Consensus 196 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~----~~~~~~i~~~--~~~~~~~~~------ 263 (373)
T 2r5t_A 196 TSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT----AEMYDNILNK--PLQLKPNIT------ 263 (373)
T ss_dssp CCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBH----HHHHHHHHHS--CCCCCSSSC------
T ss_pred cccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH----HHHHHHHHhc--ccCCCCCCC------
Confidence 56679999999999 67899999999999999999999853221 1111111111 112222211
Q ss_pred HHHHHHHHhccccCCCCCCCH----HHHHHHHHHhhhhhc
Q 042735 628 ISIMEVAFSCLDVSPESRPTM----QTITQQLLFSLVYFS 663 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~----~ev~~~l~~~~~~~~ 663 (667)
..+.+++.+||+.||++||++ .|+.++.||....|+
T Consensus 264 ~~~~~li~~lL~~dp~~R~~~~~~~~~i~~h~~f~~~~w~ 303 (373)
T 2r5t_A 264 NSARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLINWD 303 (373)
T ss_dssp HHHHHHHHHHTCSSGGGSTTTTTTHHHHHTSGGGTTCCHH
T ss_pred HHHHHHHHHHcccCHHhCCCCCCCHHHHhCCccccCCCHH
Confidence 245678889999999999996 689999999876654
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=294.42 Aligned_cols=221 Identities=22% Similarity=0.279 Sum_probs=163.9
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~l 498 (667)
++|+..+.||+|+||+||+|+.. +++.||||++...... ......+.+|+..+.++ +|||||++++++.+.+..++
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~l 134 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRG--PKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYL 134 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCS--HHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccC--hHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEE
Confidence 57899999999999999999875 6889999987654332 23344566777776666 89999999999999999999
Q ss_pred EEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 499 IYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
||||+ +|+|.+.+.... ...|.||||+|||++.++.+||+|||+++...... .
T Consensus 135 v~e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~-~ 212 (311)
T 3p1a_A 135 QTELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAG-A 212 (311)
T ss_dssp EEECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTTCEECC-----
T ss_pred EEecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEccceeeeecccCC-C
Confidence 99999 678877654321 11244999999999999999999999998764332 2
Q ss_pred cccccccccccCCC-----CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 554 WSALVGTYRYVAPD-----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE-----~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
.....||+.|+||| |+.++|||||||++|||++|+.|+.... .. ..+.....++. .......
T Consensus 213 ~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~-------~~----~~~~~~~~~~~--~~~~~~~ 279 (311)
T 3p1a_A 213 GEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVACNMELPHGGE-------GW----QQLRQGYLPPE--FTAGLSS 279 (311)
T ss_dssp --CCCCCGGGCCGGGGGTCCSTHHHHHHHHHHHHHHHHTCCCCSSHH-------HH----HHHTTTCCCHH--HHTTSCH
T ss_pred CcccCCCccccCHhHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcc-------HH----HHHhccCCCcc--cccCCCH
Confidence 34567999999999 5789999999999999999976643111 00 01111111110 0011123
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.+.+++.+||+.||++|||++|++++.|+.
T Consensus 280 ~l~~li~~~L~~dP~~Rpt~~ell~hp~~~ 309 (311)
T 3p1a_A 280 ELRSVLVMMLEPDPKLRATAEALLALPVLR 309 (311)
T ss_dssp HHHHHHHHHSCSSTTTSCCHHHHHTSGGGS
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHhCcccc
Confidence 567888899999999999999999998875
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=316.46 Aligned_cols=234 Identities=20% Similarity=0.274 Sum_probs=178.4
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|+.. +++.||||++..... ........+.+|++++.+++|||||++++++.+.+..++
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~-~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~l 261 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRI-KKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCL 261 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHH-HHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhh-hhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEE
Confidence 367888999999999999999874 688999998753211 011223568899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 499 IYEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
||||+++|+|.+++..... ..|.||||+|||++.++.+||+|||+++......
T Consensus 262 VmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~- 340 (576)
T 2acx_A 262 VLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQ- 340 (576)
T ss_dssp EECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTC-
T ss_pred EEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEecccceecccCc-
Confidence 9999999999988754321 1134999999999999999999999998765433
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....+||+.|+||| |+.++|||||||++|||+||+.||............... +. ......+...+
T Consensus 341 ~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~-i~-~~~~~~p~~~s----- 413 (576)
T 2acx_A 341 TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERL-VK-EVPEEYSERFS----- 413 (576)
T ss_dssp CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHH-HH-HCCCCCCTTSC-----
T ss_pred cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHH-hh-cccccCCccCC-----
Confidence 234568999999999 678999999999999999999998643321111111111 11 11122222111
Q ss_pred HHHHHHHHHhccccCCCCCC-----CHHHHHHHHHHhhhhhc
Q 042735 627 LISIMEVAFSCLDVSPESRP-----TMQTITQQLLFSLVYFS 663 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~~ 663 (667)
..+.+++.+||+.||++|| +++||++|.||..+.|.
T Consensus 414 -~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~HpfF~~i~w~ 454 (576)
T 2acx_A 414 -PQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFK 454 (576)
T ss_dssp -HHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTSGGGTTCCHH
T ss_pred -HHHHHHHHHhccCCHHHcCCCCCCCHHHHHhChhhccCCHH
Confidence 2466788899999999999 89999999999876553
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=303.33 Aligned_cols=228 Identities=19% Similarity=0.273 Sum_probs=173.0
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|... ++..+|+|.+.... ......+.+|++++++++|||||++++++.+....++
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~----~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~l 125 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY----PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVL 125 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS----HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccc----hhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEE
Confidence 367889999999999999999864 57889999886432 2334578999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC-------------------------CcccccccCCeeecC--CCceEEecccccccccCCC
Q 042735 499 IYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDL--EHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~--~~~~kl~DFGla~~~~~~~ 551 (667)
||||+++|+|.+.+..... ..|.||||+|||++. ++.+||+|||+++......
T Consensus 126 v~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~ 205 (387)
T 1kob_A 126 ILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE 205 (387)
T ss_dssp EEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS
T ss_pred EEEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCCc
Confidence 9999999999988764321 113499999999974 5789999999998765432
Q ss_pred CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
.....+||+.|+||| |+.++|||||||++|||+||+.||...... ......... ....+.. ....
T Consensus 206 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~----~~~~~i~~~--~~~~~~~--~~~~ 276 (387)
T 1kob_A 206 -IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDL----ETLQNVKRC--DWEFDED--AFSS 276 (387)
T ss_dssp -CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH----HHHHHHHHC--CCCCCSS--TTTT
T ss_pred -ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHH----HHHHHHHhC--CCCCCcc--cccc
Confidence 234568999999999 567899999999999999999998643211 111110000 1111111 0011
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
....+.+++.+||+.||++|||++|++++.|+...
T Consensus 277 ~s~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~ 311 (387)
T 1kob_A 277 VSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGD 311 (387)
T ss_dssp SCHHHHHHHHTTSCSSGGGSCCHHHHHTSTTTSSC
T ss_pred CCHHHHHHHHHHcCCChhHCcCHHHHhhCccccCC
Confidence 12246788889999999999999999999988643
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=300.68 Aligned_cols=227 Identities=20% Similarity=0.267 Sum_probs=169.4
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~ 497 (667)
.++|+..+.||+|+||.||+|... +++.+|||++..... .+.+|++++.++ +|||||++++++.+++..+
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--------~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~ 92 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR--------DPTEEIEILLRYGQHPNIITLKDVYDDGKYVY 92 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC--------CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEE
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC--------ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEE
Confidence 467899999999999999999874 578899999865322 234688888888 6999999999999999999
Q ss_pred EEEEecCCCChHHHhccccC------------------------CcccccccCCeeecC-C---CceEEecccccccccC
Q 042735 498 LIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDL-E---HKAHVSDFGIAKFLKP 549 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~-~---~~~kl~DFGla~~~~~ 549 (667)
+||||+++|+|.+.+..... ..|.||||+|||+.. + +.+||+|||+++....
T Consensus 93 lv~E~~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~ 172 (342)
T 2qr7_A 93 VVTELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRA 172 (342)
T ss_dssp EEECCCCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBC
T ss_pred EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcC
Confidence 99999999999988754321 123499999999843 3 3599999999997665
Q ss_pred CCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 550 DSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
........+||+.|+||| |+.++|||||||++|||++|+.||...... .............. ..+.. ..
T Consensus 173 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~-~~~~~~~~i~~~~~--~~~~~--~~ 247 (342)
T 2qr7_A 173 ENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDD-TPEEILARIGSGKF--SLSGG--YW 247 (342)
T ss_dssp TTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTS-CHHHHHHHHHHCCC--CCCST--TT
T ss_pred CCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcC-CHHHHHHHHccCCc--ccCcc--cc
Confidence 544455678999999999 677999999999999999999998632111 00011111111111 11110 00
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
......+.+++.+||+.||++|||++|++++.|+..
T Consensus 248 ~~~s~~~~~li~~~L~~dP~~R~t~~~il~hp~~~~ 283 (342)
T 2qr7_A 248 NSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWIVH 283 (342)
T ss_dssp TTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHT
T ss_pred ccCCHHHHHHHHHHCCCChhHCcCHHHHhcCCeecC
Confidence 111224667888999999999999999999999854
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=297.51 Aligned_cols=223 Identities=26% Similarity=0.389 Sum_probs=169.0
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
+.|...+.||+|+||.||+|+. .+++.||||++..... ......+.+.+|++++++++|||||+++|++.+.+..++|
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 132 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGK-QSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV 132 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSS-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccc-cchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence 4588889999999999999986 5688899999865322 2233456799999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||++ |++.+.+.... ...|.||||+|||++.++.+||+|||+++.....
T Consensus 133 ~e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~---- 207 (348)
T 1u5q_A 133 MEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA---- 207 (348)
T ss_dssp EECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB----
T ss_pred EecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC----
Confidence 99998 67766553211 1224599999999999999999999999875432
Q ss_pred ccccccccccCCC---------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 555 SALVGTYRYVAPD---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 555 ~~~~Gt~~y~aPE---------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
...+||+.|+||| |+.++|||||||++|||+||+.||...... .... .......+..... ..
T Consensus 208 ~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~----~~~~-~~~~~~~~~~~~~--~~-- 278 (348)
T 1u5q_A 208 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM----SALY-HIAQNESPALQSG--HW-- 278 (348)
T ss_dssp CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH----HHHH-HHHHSCCCCCCCT--TS--
T ss_pred CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH----HHHH-HHHhcCCCCCCCC--CC--
Confidence 3467999999999 456899999999999999999997532210 0110 1111111111111 11
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
...+.+++.+||+.+|++|||++|++++.|+..
T Consensus 279 -~~~l~~li~~~l~~dP~~Rps~~~ll~h~~~~~ 311 (348)
T 1u5q_A 279 -SEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLR 311 (348)
T ss_dssp -CHHHHHHHHHHTCSSGGGSCCHHHHTTCHHHHS
T ss_pred -CHHHHHHHHHHcccChhhCcCHHHHhhChhhhc
Confidence 124567888999999999999999999998864
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=298.93 Aligned_cols=226 Identities=24% Similarity=0.380 Sum_probs=172.5
Q ss_pred cCCcCcceeecccCeEEEEEEeC--------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP--------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCS 491 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~--------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~ 491 (667)
++|...+.||+|+||.||+|+.. .+..||||++.... .....+.+.+|+++++++ +|||||++++++.
T Consensus 69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~ 145 (382)
T 3tt0_A 69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA---TEKDLSDLISEMEMMKMIGKHKNIINLLGACT 145 (382)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc---CHHHHHHHHHHHHHHHHhcCCchhhhheeeec
Confidence 57888899999999999999752 23569999987542 233456799999999999 8999999999999
Q ss_pred eCCceEEEEEecCCCChHHHhccccC----------------------------------------CcccccccCCeeec
Q 042735 492 HARHSILIYEYLKRGSLATNLSNDAA----------------------------------------AEELDISSKNVLLD 531 (667)
Q Consensus 492 ~~~~~~lv~ey~~~g~L~~~l~~~~~----------------------------------------~~~~dlk~~NiLld 531 (667)
+.+..++||||+++|+|.+++..... ..|.||||+|||++
T Consensus 146 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~ 225 (382)
T 3tt0_A 146 QDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVT 225 (382)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC
T ss_pred cCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcceEEEc
Confidence 99999999999999999998864320 11339999999999
Q ss_pred CCCceEEecccccccccCCC--CCcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChh
Q 042735 532 LEHKAHVSDFGIAKFLKPDS--SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPS 602 (667)
Q Consensus 532 ~~~~~kl~DFGla~~~~~~~--~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~ 602 (667)
.++.+||+|||+++...... .......||+.|+||| ++.++|||||||++|||+| |+.||..... ..
T Consensus 226 ~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~----~~ 301 (382)
T 3tt0_A 226 EDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV----EE 301 (382)
T ss_dssp TTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH----HH
T ss_pred CCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH----HH
Confidence 99999999999998765432 1233456889999999 5779999999999999999 9999753221 11
Q ss_pred hhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 603 VINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.. ..+........+... ...+.+++.+||+.+|++|||++||+++|.....
T Consensus 302 ~~-~~~~~~~~~~~~~~~------~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~ 352 (382)
T 3tt0_A 302 LF-KLLKEGHRMDKPSNC------TNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVA 352 (382)
T ss_dssp HH-HHHHTTCCCCCCSSC------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HH-HHHHcCCCCCCCccC------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 11 111111112222211 1246678889999999999999999999887643
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-33 Score=316.71 Aligned_cols=249 Identities=21% Similarity=0.197 Sum_probs=188.3
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEc
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLAL 81 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L 81 (667)
++|+.|+|++|.++++.+..|.++++|++|+|++|++++..|..|+++++|++|+|++|++++..+..++. .+|++|+|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 47899999999999888888999999999999999999888999999999999999999998655556766 56999999
Q ss_pred ccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhh--cCCCCCEEECcCCccC
Q 042735 82 ENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFG--IYLNLTFLDISDNNFF 159 (667)
Q Consensus 82 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~--~l~~L~~L~L~~n~l~ 159 (667)
++|.+++..+..+.++.+|+.|++++|.+++..|..+.++++|++|+|++|.+++..+..+. .+++|+.|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999887778899999999999999999988888889999999999999999887777665 4478888888888887
Q ss_pred CccCccCCCC---------------------------CCCCEEEccCCcCCCCcCccccCCCC--cCeeeccCCcccccC
Q 042735 160 GEIASNWGKC---------------------------PKLSTLNVSMNNITRSIPLEIGNLST--LNEFDLSLNHIVGKI 210 (667)
Q Consensus 160 ~~~~~~~~~l---------------------------~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~L~~n~l~~~~ 210 (667)
+..|..+..+ ++|+.|++++|.+.+..|..+.+++. |+.|+|++|.+.+..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 7666554432 34555566666665555555555543 666666666666555
Q ss_pred CccccCCcccceeecccccccccCcccccCCCCCCeeeccC
Q 042735 211 PKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLST 251 (667)
Q Consensus 211 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 251 (667)
|..|+.+++|+.|++++|.+.+..|..++++++|+.|++++
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 55566666666666666666555554444444444444443
|
| >2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=310.00 Aligned_cols=227 Identities=23% Similarity=0.365 Sum_probs=174.8
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|+.. +++.||||++..... ......+.+.+|+++++.++|||||++++++.+.+..++|
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~-~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv 94 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKI-RSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV 94 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHH-HHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhc-cCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 57888899999999999999875 688999998753210 0111245688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 500 YEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
|||+++|+|.+++..... ..|.||||+|||++.++.+||+|||+++...... ...
T Consensus 95 ~E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~-~~~ 173 (476)
T 2y94_A 95 MEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE-FLR 173 (476)
T ss_dssp EECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTC-CBC
T ss_pred EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCeEEEeccchhhccccc-ccc
Confidence 999999999988864321 1234999999999999999999999998765432 344
Q ss_pred cccccccccCCC------C-CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 556 ALVGTYRYVAPD------Y-RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~-~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
+.+||+.|+||| | +.++||||+||++|||+||+.||..... ..... .+.+.....+.. . ..
T Consensus 174 ~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~----~~~~~----~i~~~~~~~p~~-~---s~ 241 (476)
T 2y94_A 174 TSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHV----PTLFK----KICDGIFYTPQY-L---NP 241 (476)
T ss_dssp CCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSS----HHHHH----HHHTTCCCCCTT-C---CH
T ss_pred ccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCH----HHHHH----HHhcCCcCCCcc-C---CH
Confidence 578999999999 2 4689999999999999999999863221 11111 111111111111 1 12
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.+.+++.+||+.||++|||++|++++.|+....
T Consensus 242 ~~~~Li~~~L~~dP~~Rpt~~eil~hp~~~~~~ 274 (476)
T 2y94_A 242 SVISLLKHMLQVDPMKRATIKDIREHEWFKQDL 274 (476)
T ss_dssp HHHHHHHHHTCSSTTTSCCHHHHHTCHHHHTTC
T ss_pred HHHHHHHHHcCCCchhCcCHHHHHhCHHhhhcC
Confidence 466788899999999999999999999997543
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=309.45 Aligned_cols=223 Identities=24% Similarity=0.410 Sum_probs=170.9
Q ss_pred HcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
.++|...+.||+|+||.||+|.+.++..||||++.... ...+.|.+|++++++++|||||++++++. .+..++|
T Consensus 187 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv 260 (454)
T 1qcf_A 187 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-----MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYII 260 (454)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-----BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEE
T ss_pred hHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-----ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEE
Confidence 35788889999999999999999888899999987532 13467999999999999999999999986 5678999
Q ss_pred EEecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC-
Q 042735 500 YEYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS- 552 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~- 552 (667)
|||+++|+|.+++.... ...|.||||+|||++.++.+||+|||+++.......
T Consensus 261 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~ 340 (454)
T 1qcf_A 261 TEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYT 340 (454)
T ss_dssp ECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHH
T ss_pred EeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCcee
Confidence 99999999998886421 112449999999999999999999999987643211
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
......+|+.|+||| |+.++|||||||++|||+| |+.||..... ...... +........+...
T Consensus 341 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~----~~~~~~-i~~~~~~~~~~~~----- 410 (454)
T 1qcf_A 341 AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN----PEVIRA-LERGYRMPRPENC----- 410 (454)
T ss_dssp TTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH----HHHHHH-HHHTCCCCCCTTS-----
T ss_pred ccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCH----HHHHHH-HHcCCCCCCCCCC-----
Confidence 112345678999999 6789999999999999999 9999863221 111111 1111111111111
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
...+.+++.+||+.||++||||++|++.|....
T Consensus 411 -~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~ 443 (454)
T 1qcf_A 411 -PEELYNIMMRCWKNRPEERPTFEYIQSVLDDFY 443 (454)
T ss_dssp -CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred -CHHHHHHHHHHccCChhHCcCHHHHHHHHHHHH
Confidence 225678888999999999999999999987653
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=292.35 Aligned_cols=232 Identities=27% Similarity=0.393 Sum_probs=166.3
Q ss_pred cCCcCcceeecccCeEEEEEEe-----CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC--
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA-- 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-----~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~-- 493 (667)
++|+..+.||+|+||.||+|++ .+++.||||++... .....+.|.+|++++++++|||||++++++...
T Consensus 10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 85 (295)
T 3ugc_A 10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS----TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR 85 (295)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCC----CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHH
T ss_pred HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccC----CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCC
Confidence 5788889999999999999985 35788999998643 233456799999999999999999999999654
Q ss_pred CceEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEeccccccccc
Q 042735 494 RHSILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLK 548 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~ 548 (667)
...++||||+++|+|.+++.... ...|.||||+||+++.++.+||+|||+++...
T Consensus 86 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~ 165 (295)
T 3ugc_A 86 RNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLP 165 (295)
T ss_dssp TSCEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCSCC---
T ss_pred CceEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEccCccccccc
Confidence 55899999999999998875432 11244999999999999999999999998765
Q ss_pred CCCC---CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccC-------CCChhhhhhhhcccc
Q 042735 549 PDSS---NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSI-------LPSPSVINMRLDEML 612 (667)
Q Consensus 549 ~~~~---~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~-------~~~~~~~~~~~~~~~ 612 (667)
.... ......||+.|+||| |+.++|||||||++|||+||..|+...... ..............+
T Consensus 166 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (295)
T 3ugc_A 166 QDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELL 245 (295)
T ss_dssp ----------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHH
T ss_pred CCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHH
Confidence 4322 123345788899999 678999999999999999999987532100 000000000000001
Q ss_pred -C-CCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 613 -D-PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 613 -~-~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
. ...+.+ .. ....+.+++.+||+.+|++|||++|++++|.....
T Consensus 246 ~~~~~~~~~-~~---~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~ 291 (295)
T 3ugc_A 246 KNNGRLPRP-DG---CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 291 (295)
T ss_dssp HTTCCCCCC-TT---CCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred hccCcCCCC-cC---cCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHH
Confidence 1 111111 11 12256778889999999999999999999887644
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=287.47 Aligned_cols=224 Identities=23% Similarity=0.411 Sum_probs=170.0
Q ss_pred HcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
.++|+..+.||+|+||.||+|...++..||||++..... ..+++.+|++++.+++||||+++++++.+.+..++|
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 97 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-----SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFII 97 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-----CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEE
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-----CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEE
Confidence 357888899999999999999999888999999875322 235689999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC-C
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-N 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~ 553 (667)
|||+++|+|.+++.... ...|.||||+||+++.++.+||+|||+++....... .
T Consensus 98 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~ 177 (283)
T 3gen_A 98 TEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTS 177 (283)
T ss_dssp ECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHS
T ss_pred EeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEcccccccccccccccc
Confidence 99999999998886421 112349999999999999999999999986543211 1
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....||+.|+||| |+.++|||||||++|||+| |+.||..... ......+........+...+
T Consensus 178 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~----- 247 (283)
T 3gen_A 178 SVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN-----SETAEHIAQGLRLYRPHLAS----- 247 (283)
T ss_dssp TTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCH-----HHHHHHHHTTCCCCCCTTCC-----
T ss_pred ccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccCh-----hHHHHHHhcccCCCCCCcCC-----
Confidence 22345788899999 5779999999999999999 9999863321 11111111111111221111
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..+.+++.+||+.+|++|||++|++++|....
T Consensus 248 -~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~ 279 (283)
T 3gen_A 248 -EKVYTIMYSCWHEKADERPTFKILLSNILDVM 279 (283)
T ss_dssp -HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHccCChhHCcCHHHHHHHHHHHh
Confidence 24667888999999999999999999998654
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=289.14 Aligned_cols=230 Identities=23% Similarity=0.301 Sum_probs=175.6
Q ss_pred HcCCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|...+.||+|+||.||+|.... +..+|+|++..... ...+.+.+|++++++++||||+++++++.+.+..++
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l 83 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFV----EDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYL 83 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC----SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhcc----chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEE
Confidence 3568889999999999999998754 67899998864322 224578999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC------------------------CcccccccCCeee---cCCCceEEecccccccccCCC
Q 042735 499 IYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLL---DLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLl---d~~~~~kl~DFGla~~~~~~~ 551 (667)
||||+++|+|.+.+..... ..|.||||+||++ +.++.+||+|||+++......
T Consensus 84 v~e~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~ 163 (277)
T 3f3z_A 84 VMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGK 163 (277)
T ss_dssp EEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTS
T ss_pred EEeccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCcc
Confidence 9999999999877643221 1244999999999 888999999999998765433
Q ss_pred CCcccccccccccCCC-----CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 552 SNWSALVGTYRYVAPD-----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE-----~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
......||+.|+||| ++.++|||||||++|||+||+.||..... ..... .+.......+.......
T Consensus 164 -~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~ 234 (277)
T 3f3z_A 164 -MMRTKVGTPYYVSPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSAPTD----SEVML----KIREGTFTFPEKDWLNV 234 (277)
T ss_dssp -CBCCCCSCTTTCCHHHHTTCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHH----HHHHCCCCCCHHHHTTS
T ss_pred -chhccCCCCCccChHHhcccCCchhhehhHHHHHHHHHHCCCCCCCCCH----HHHHH----HHHhCCCCCCchhhhcC
Confidence 234567999999999 57899999999999999999999863221 11111 11111111111111112
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
...+.+++.+||+.||++|||+.|++++.|+....-
T Consensus 235 ~~~~~~li~~~l~~dp~~R~s~~~~l~h~~~~~~~~ 270 (277)
T 3f3z_A 235 SPQAESLIRRLLTKSPKQRITSLQALEHEWFEKQLS 270 (277)
T ss_dssp CHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHHHHC
T ss_pred CHHHHHHHHHHccCChhhCcCHHHHhcCHHHhcccc
Confidence 235677888999999999999999999999976553
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=292.51 Aligned_cols=232 Identities=27% Similarity=0.371 Sum_probs=165.0
Q ss_pred HcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc--CCCCeeEEEEEEEeC----
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI--RHRNIVKFYGFCSHA---- 493 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l--~H~niv~~~g~~~~~---- 493 (667)
.++|+..+.||+|+||.||+|+.. +..||||++... ....+.+|.+++... +|||||++++++...
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~-------~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~ 107 (337)
T 3mdy_A 36 AKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT-------EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSW 107 (337)
T ss_dssp HHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG-------GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGG
T ss_pred ccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc-------ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCC
Confidence 468999999999999999999886 788999987431 223455666666554 899999999999887
Q ss_pred CceEEEEEecCCCChHHHhccc-----------------------c--------CCcccccccCCeeecCCCceEEeccc
Q 042735 494 RHSILIYEYLKRGSLATNLSND-----------------------A--------AAEELDISSKNVLLDLEHKAHVSDFG 542 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~-----------------------~--------~~~~~dlk~~NiLld~~~~~kl~DFG 542 (667)
...++||||+++|+|.+++... . ...|.||||+|||++.++.+||+|||
T Consensus 108 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg 187 (337)
T 3mdy_A 108 TQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLG 187 (337)
T ss_dssp CEEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCT
T ss_pred CceEEEEeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCC
Confidence 6889999999999998876431 1 23466999999999999999999999
Q ss_pred ccccccCCCCC----cccccccccccCCCC------CCC------chHHHHHHHHHHHHhCC----------CCCCCCcc
Q 042735 543 IAKFLKPDSSN----WSALVGTYRYVAPDY------RKK------CDVYSFRVLALEVIKGK----------HPRGFVSS 596 (667)
Q Consensus 543 la~~~~~~~~~----~~~~~Gt~~y~aPE~------~~~------~DV~sfGvvl~ElltG~----------~p~~~~~~ 596 (667)
+++........ .....||+.|+|||. ..+ +|||||||++|||+||. .||.....
T Consensus 188 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~ 267 (337)
T 3mdy_A 188 LAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVP 267 (337)
T ss_dssp TCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSC
T ss_pred CceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcC
Confidence 99865433221 124579999999992 233 89999999999999994 44432211
Q ss_pred CCCChhhhh-hhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 597 ILPSPSVIN-MRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 597 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
......... ........+..+... ........+.+++.+||+.||++|||+.||+++|.....
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~ 331 (337)
T 3mdy_A 268 SDPSYEDMREIVCIKKLRPSFPNRW-SSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSE 331 (337)
T ss_dssp SSCCHHHHHHHHTTSCCCCCCCGGG-GGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCchhhhHHHHhhhccCccccccc-hhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHh
Confidence 111111111 011111122222110 112345568889999999999999999999999987654
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=285.27 Aligned_cols=224 Identities=27% Similarity=0.441 Sum_probs=167.3
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhH---HHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQ---KEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~---~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
++|+..+.||+|+||.||+|+. .+++.||||++............ +.+.+|++++++++||||+++++++.+..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-- 96 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-- 96 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence 5788889999999999999987 56888999998654332222211 57899999999999999999999986654
Q ss_pred EEEEEecCCCChHHHhccc-------------------------cC--CcccccccCCeeecCCCc-----eEEeccccc
Q 042735 497 ILIYEYLKRGSLATNLSND-------------------------AA--AEELDISSKNVLLDLEHK-----AHVSDFGIA 544 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~-------------------------~~--~~~~dlk~~NiLld~~~~-----~kl~DFGla 544 (667)
++||||+++|+|.+.+... .. ..|.||||+||+++.++. +||+|||++
T Consensus 97 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~ 176 (287)
T 4f0f_A 97 RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS 176 (287)
T ss_dssp EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTC
T ss_pred eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCCCcc
Confidence 7999999999997766322 12 446699999999988876 999999999
Q ss_pred ccccCCCCCcccccccccccCCCC--------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCC
Q 042735 545 KFLKPDSSNWSALVGTYRYVAPDY--------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRL 616 (667)
Q Consensus 545 ~~~~~~~~~~~~~~Gt~~y~aPE~--------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (667)
+.... ......||+.|+|||. +.++|||||||++|||+||+.||...... ..............+..
T Consensus 177 ~~~~~---~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~--~~~~~~~~~~~~~~~~~ 251 (287)
T 4f0f_A 177 QQSVH---SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYG--KIKFINMIREEGLRPTI 251 (287)
T ss_dssp BCCSS---CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCC--HHHHHHHHHHSCCCCCC
T ss_pred ccccc---cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCcccccc--HHHHHHHHhccCCCCCC
Confidence 85432 2345679999999993 35789999999999999999998643211 00011111112222222
Q ss_pred CCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
+...+ ..+.+++.+||+.||++|||++|+++.|..
T Consensus 252 ~~~~~------~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ 286 (287)
T 4f0f_A 252 PEDCP------PRLRNVIELCWSGDPKKRPHFSYIVKELSE 286 (287)
T ss_dssp CTTSC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred CcccC------HHHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence 22222 246778889999999999999999998863
|
| >1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=304.41 Aligned_cols=235 Identities=23% Similarity=0.333 Sum_probs=174.7
Q ss_pred HcCCcCcceeecccCeEEEEEEe----CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCC
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHAR 494 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~----~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~ 494 (667)
.++|+..+.||+|+||.||+|+. .+++.||||++............+.+.+|++++.++ .||||+++++++...+
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 46899999999999999999987 367899999986432111112234577899999999 5999999999999999
Q ss_pred ceEEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 495 HSILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
..++||||+++|+|.+++.... ...|.||||+|||++.++.+||+|||+++.....
T Consensus 133 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~ 212 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVAD 212 (355)
T ss_dssp EEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGG
T ss_pred eEEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCcEEEeeCCCCeecccC
Confidence 9999999999999988775321 1224599999999999999999999999865432
Q ss_pred C-CCcccccccccccCCC--------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 551 S-SNWSALVGTYRYVAPD--------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 551 ~-~~~~~~~Gt~~y~aPE--------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
. ......+||+.|+||| ++.++|||||||++|||+||+.||................. . ..+..+...+
T Consensus 213 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~ 290 (355)
T 1vzo_A 213 ETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRIL-K-SEPPYPQEMS 290 (355)
T ss_dssp GGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHH-H-CCCCCCTTSC
T ss_pred CCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHh-c-cCCCCCcccC
Confidence 2 1233468999999999 35679999999999999999999863322111111111111 0 1122222211
Q ss_pred chHHHHHHHHHHHHhccccCCCCCC-----CHHHHHHHHHHhhhhh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRP-----TMQTITQQLLFSLVYF 662 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~ 662 (667)
..+.+++.+||+.||++|| |++|+++++||....+
T Consensus 291 ------~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~f~~~~~ 330 (355)
T 1vzo_A 291 ------ALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINW 330 (355)
T ss_dssp ------HHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCH
T ss_pred ------HHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcchhcCCh
Confidence 2456788899999999999 9999999999986544
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=295.39 Aligned_cols=228 Identities=22% Similarity=0.366 Sum_probs=172.3
Q ss_pred HcCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA 493 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~ 493 (667)
.++|+..+.||+|+||.||+|+.. ++..||||++..... ....+.|.+|++++++++|||||++++++.+.
T Consensus 46 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~ 122 (343)
T 1luf_A 46 RNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS---ADMQADFQREAALMAEFDNPNIVKLLGVCAVG 122 (343)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCC---HHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred HHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccC---HHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC
Confidence 468889999999999999999874 347899999875422 23456799999999999999999999999999
Q ss_pred CceEEEEEecCCCChHHHhcccc------------------------------------------------CCccccccc
Q 042735 494 RHSILIYEYLKRGSLATNLSNDA------------------------------------------------AAEELDISS 525 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~------------------------------------------------~~~~~dlk~ 525 (667)
+..++||||+++|+|.+++.... ...|.||||
T Consensus 123 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp 202 (343)
T 1luf_A 123 KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLAT 202 (343)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSG
T ss_pred CceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCc
Confidence 99999999999999998875421 011349999
Q ss_pred CCeeecCCCceEEecccccccccCCC--CCcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCcc
Q 042735 526 KNVLLDLEHKAHVSDFGIAKFLKPDS--SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSS 596 (667)
Q Consensus 526 ~NiLld~~~~~kl~DFGla~~~~~~~--~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~ 596 (667)
+||+++.++.+||+|||+++...... .......||+.|+||| |+.++|||||||++|||+| |+.||.....
T Consensus 203 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~ 282 (343)
T 1luf_A 203 RNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAH 282 (343)
T ss_dssp GGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH
T ss_pred ceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCCh
Confidence 99999999999999999998654322 1223457899999999 5779999999999999999 9999753221
Q ss_pred CCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 597 ILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
..... .+.+...+...... ...+.+++.+||+.+|++|||+.|++++|......
T Consensus 283 ----~~~~~----~~~~~~~~~~~~~~---~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~ 336 (343)
T 1luf_A 283 ----EEVIY----YVRDGNILACPENC---PLELYNLMRLCWSKLPADRPSFCSIHRILQRMCER 336 (343)
T ss_dssp ----HHHHH----HHHTTCCCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC-
T ss_pred ----HHHHH----HHhCCCcCCCCCCC---CHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhh
Confidence 11111 11111111111111 12466788899999999999999999999876544
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=290.60 Aligned_cols=228 Identities=21% Similarity=0.332 Sum_probs=157.9
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|...+.||+|+||.||+|+. .+++.||||.+..... ......+.+.+|++++++++||||+++++++.+.+..++
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 88 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAM-YKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYL 88 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH-HHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhh-hhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEE
Confidence 46789999999999999999986 5688999998753210 011123578999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 499 IYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
||||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++........
T Consensus 89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~ 168 (278)
T 3cok_A 89 VLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEK 168 (278)
T ss_dssp EEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTCEECC-----
T ss_pred EEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCc
Confidence 9999999999988764311 113499999999999999999999999876543333
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
.....||+.|+||| ++.++|||||||++|||+||+.||......... ... ...+...+... .
T Consensus 169 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~----~~~--~~~~~~~~~~~------~ 236 (278)
T 3cok_A 169 HYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTL----NKV--VLADYEMPSFL------S 236 (278)
T ss_dssp -----------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC---------C--CSSCCCCCTTS------C
T ss_pred ceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHH----HHH--hhcccCCcccc------C
Confidence 34567999999999 467899999999999999999998643211100 000 00111122111 1
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..+.+++.+||+.||++|||++|++++.|+...
T Consensus 237 ~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~ 269 (278)
T 3cok_A 237 IEAKDLIHQLLRRNPADRLSLSSVLDHPFMSRN 269 (278)
T ss_dssp HHHHHHHHHHSCSSGGGSCCHHHHTTSTTTC--
T ss_pred HHHHHHHHHHcccCHhhCCCHHHHhcCccccCC
Confidence 246678889999999999999999999888643
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=283.51 Aligned_cols=221 Identities=20% Similarity=0.304 Sum_probs=170.1
Q ss_pred HcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC--CceE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA--RHSI 497 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~--~~~~ 497 (667)
.++|...+.||+|+||.||+|+.. +..+|||++...... ....+.|.+|++++++++|||||++++++.+. +..+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 85 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWS--TRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPT 85 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCC--HHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCE
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccC--HHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeE
Confidence 357888999999999999999985 778999998754322 23456799999999999999999999999887 7889
Q ss_pred EEEEecCCCChHHHhcccc--------------------------C--CcccccccCCeeecCCCceEEecccccccccC
Q 042735 498 LIYEYLKRGSLATNLSNDA--------------------------A--AEELDISSKNVLLDLEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~--------------------------~--~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~ 549 (667)
+||||+++|+|.+++.... . ..|.||||+||+++.++.+||+|||++.....
T Consensus 86 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~ 165 (271)
T 3kmu_A 86 LITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQS 165 (271)
T ss_dssp EEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSC
T ss_pred eeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEeccceeeecc
Confidence 9999999999998876432 1 23459999999999999999999998765322
Q ss_pred CCCCcccccccccccCCCC------CC---CchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCC
Q 042735 550 DSSNWSALVGTYRYVAPDY------RK---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE~------~~---~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (667)
....||+.|+|||. .. ++|||||||++|||+||+.||..... .............+..+...
T Consensus 166 -----~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~ 236 (271)
T 3kmu_A 166 -----PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSN----MEIGMKVALEGLRPTIPPGI 236 (271)
T ss_dssp -----TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCH----HHHHHHHHHSCCCCCCCTTC
T ss_pred -----cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccCh----HHHHHHHHhcCCCCCCCCCC
Confidence 23578999999992 22 69999999999999999999863321 11111111122222233222
Q ss_pred CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 621 ~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
+ ..+.+++.+||+.||++|||++|+++.|...
T Consensus 237 ~------~~~~~li~~~l~~~p~~Rps~~~il~~L~~l 268 (271)
T 3kmu_A 237 S------PHVSKLMKICMNEDPAKRPKFDMIVPILEKM 268 (271)
T ss_dssp C------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCChhhCcCHHHHHHHHHHh
Confidence 2 2466788899999999999999999998764
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-33 Score=309.98 Aligned_cols=297 Identities=23% Similarity=0.273 Sum_probs=243.1
Q ss_pred CCCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccce-eCCCCCcc-cccCE
Q 042735 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSG-SIPPSVGN-LMLTV 78 (667)
Q Consensus 1 ~L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~-~~L~~ 78 (667)
++++|+.|+|++|.|+++.|..|.++++|++|+|++|+|+ .+|.. .+++|++|+|++|++++ .+|..++. .+|+.
T Consensus 74 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~ 150 (562)
T 3a79_B 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF 150 (562)
T ss_dssp TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCE
T ss_pred cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccE
Confidence 4789999999999999998999999999999999999998 56666 79999999999999986 34567776 46999
Q ss_pred EEcccccccccCCccccCCCCc--cEEEeeCccc--ccccCccCCCCC--------------------------------
Q 042735 79 LALENNHFTGNLRHNICRNGAL--ERVIVGGNHF--RGPIPKCLRNCP-------------------------------- 122 (667)
Q Consensus 79 L~L~~n~l~~~~~~~~~~~~~L--~~L~l~~n~~--~~~~p~~l~~l~-------------------------------- 122 (667)
|+|++|.+.+.. +..+.+| +.|++++|.+ ++..|..+..+.
T Consensus 151 L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 227 (562)
T 3a79_B 151 LGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227 (562)
T ss_dssp EEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred EecCCCccccCc---hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence 999999887532 3333344 7777777776 555454443322
Q ss_pred -------------------------------------------------CCcEEEccCCccccccchhh-----------
Q 042735 123 -------------------------------------------------NLVRISLEGNNMRGTISEAF----------- 142 (667)
Q Consensus 123 -------------------------------------------------~L~~L~L~~n~~~~~~~~~~----------- 142 (667)
+|++|++++|.+++.+|..+
T Consensus 228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L 307 (562)
T 3a79_B 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307 (562)
T ss_dssp EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEE
T ss_pred ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhe
Confidence 56666666666665544433
Q ss_pred ------------------------------------------hcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCC
Q 042735 143 ------------------------------------------GIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180 (667)
Q Consensus 143 ------------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 180 (667)
..+++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus 308 ~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 387 (562)
T 3a79_B 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387 (562)
T ss_dssp EEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS
T ss_pred ehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC
Confidence 67889999999999999989999999999999999999
Q ss_pred cCCCC--cCccccCCCCcCeeeccCCcccccCCc-cccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCcc
Q 042735 181 NITRS--IPLEIGNLSTLNEFDLSLNHIVGKIPK-EFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL 257 (667)
Q Consensus 181 ~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 257 (667)
++++. +|..+.++++|++|++++|.+.+.+|. .+..+++|+.|++++|.+++..|..+. ++|+.|+|++|+++.
T Consensus 388 ~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~- 464 (562)
T 3a79_B 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS- 464 (562)
T ss_dssp CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-
T ss_pred CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-
Confidence 99873 356789999999999999999985554 588999999999999999887776554 799999999999985
Q ss_pred chhhhhcccCCCeecCCCccCccccchh-hhcCCCCCEEECcCCCCCCcCc
Q 042735 258 IPESLGNLLKLHYLDLSKYQFIQELPKE-LGKLVQLSELELSHNFLGREIP 307 (667)
Q Consensus 258 ~p~~~~~l~~L~~L~ls~n~~~~~~p~~-l~~l~~L~~L~l~~n~l~~~ip 307 (667)
+|..+..+++|+.|++++|++. .+|.. +..+++|+.|++++|++....|
T Consensus 465 ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 465 IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred cChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 6777779999999999999987 57766 8999999999999999876544
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=312.21 Aligned_cols=301 Identities=24% Similarity=0.250 Sum_probs=133.8
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCC--CCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-------
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKS--LVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN------- 73 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~------- 73 (667)
++|+.|++++|.+++..|..|.+++. |++|+|++|++.+..|..|+.+++|++|+|++|++++..|..+..
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence 34455555555554444444444432 555555555554444444445555555555555444444433322
Q ss_pred ---------------------------cccCEEEcccccccccCCccccCCCCccEEEeeCccccccc--CccCCC--CC
Q 042735 74 ---------------------------LMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPI--PKCLRN--CP 122 (667)
Q Consensus 74 ---------------------------~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~--p~~l~~--l~ 122 (667)
.+|+.|+|++|.+.+..+..+..+.+|+.|++++|.+.... +..+.. .+
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 23555555555555544444444444444444433321100 000000 12
Q ss_pred CCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccC-ccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeec
Q 042735 123 NLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIA-SNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDL 201 (667)
Q Consensus 123 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 201 (667)
+|+.|++++|++++..+..|..+++|+.|++++|.+.+.+| ..|..+++|+.|++++|.+.+..+..|..+++|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 23333333344444444455555555555555555544333 34555555555555555554444444444444444444
Q ss_pred cCCccc--ccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccch--------hhhhcccCCCee
Q 042735 202 SLNHIV--GKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIP--------ESLGNLLKLHYL 271 (667)
Q Consensus 202 ~~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L 271 (667)
++|.+. +.+|..|.++++|+.|++++|.+++..+..|.++++|++|+|++|.+++..+ ..+.++++|+.|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 444443 2334444444444444444444444334444444444444444444443211 113344444444
Q ss_pred cCCCccCccccchhhhcCCCCCEEECcCCCCC
Q 042735 272 DLSKYQFIQELPKELGKLVQLSELELSHNFLG 303 (667)
Q Consensus 272 ~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 303 (667)
++++|++....+..|..+++|+.|++++|.++
T Consensus 542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCCCHHHcccccCcceeECCCCCCC
Confidence 44444433222223444444444444444443
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-34 Score=302.02 Aligned_cols=240 Identities=18% Similarity=0.242 Sum_probs=172.7
Q ss_pred HcCCcCcceeecc--cCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 420 INDFDAKYCIGSG--RHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 420 ~~~f~~~~~lg~g--~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
.++|+..+.||+| +||.||+|+.. +++.||||++...... ....+.+.+|++++++++|||||++++++.+.+..
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 101 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACS--NEMVTFLQGELHVSKLFNHPNIVPYRATFIADNEL 101 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccC--hHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEE
Confidence 3678899999999 99999999875 6889999998653322 23456788999999999999999999999999999
Q ss_pred EEEEEecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 497 ILIYEYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
++||||+++|+|.+.+.... ...|.||||+|||++.++.+||+|||.+......
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~ 181 (389)
T 3gni_B 102 WVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISH 181 (389)
T ss_dssp EEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGCEECEET
T ss_pred EEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccccceeeccc
Confidence 99999999999998875421 1123499999999999999999999998654321
Q ss_pred C-------CCcccccccccccCCC--------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCC
Q 042735 551 S-------SNWSALVGTYRYVAPD--------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPR 615 (667)
Q Consensus 551 ~-------~~~~~~~Gt~~y~aPE--------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (667)
. ......+||+.|+||| |+.++|||||||++|||+||+.||.....................+..
T Consensus 182 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 261 (389)
T 3gni_B 182 GQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTS 261 (389)
T ss_dssp TEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC------------
T ss_pred cccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCcccccc
Confidence 1 1123357999999998 467899999999999999999998632211100000000000000000
Q ss_pred ---------------------------CC-------CCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 616 ---------------------------LP-------PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 616 ---------------------------~~-------~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.+ ...+........+.+++.+||+.||++|||++|++++.||....
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~hp~f~~~~ 341 (389)
T 3gni_B 262 TIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIK 341 (389)
T ss_dssp --------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGGGC-
T ss_pred ccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcCHHHHHHh
Confidence 00 00000011123577889999999999999999999999987543
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=299.41 Aligned_cols=226 Identities=22% Similarity=0.354 Sum_probs=168.6
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC--CCCeeEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR--HRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~--H~niv~~~g~~~~~~~~~l 498 (667)
.+|+..+.||+|+||.||+|....++.||||++..... .....+.+.+|++++.+++ |||||++++++...+..++
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~l 133 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 133 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccc--cHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEE
Confidence 35888999999999999999988889999999865432 2334567999999999997 5999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC--
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-- 552 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-- 552 (667)
||| +.+|+|.+++.... ...|.||||+|||++ ++.+||+|||+++.......
T Consensus 134 v~E-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~ 211 (390)
T 2zmd_A 134 VME-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSV 211 (390)
T ss_dssp EEE-CCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC-------
T ss_pred EEe-cCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCccc
Confidence 999 57889988775432 122459999999996 58999999999987654322
Q ss_pred CcccccccccccCCC-----------------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCC
Q 042735 553 NWSALVGTYRYVAPD-----------------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPR 615 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE-----------------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (667)
.....+||+.|+||| |+.++|||||||++|||+||+.||..... ... ....++++.
T Consensus 212 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~---~~~----~~~~~~~~~ 284 (390)
T 2zmd_A 212 VKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN---QIS----KLHAIIDPN 284 (390)
T ss_dssp --CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCC---HHH----HHHHHHCTT
T ss_pred cCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhH---HHH----HHHHHhCcc
Confidence 234568999999999 34479999999999999999999853211 001 111222222
Q ss_pred CCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 616 LPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.....+... ...+.+++.+||+.||++|||+.|++++.|+..
T Consensus 285 ~~~~~~~~~--~~~~~~li~~~L~~dP~~Rps~~ell~hp~~~~ 326 (390)
T 2zmd_A 285 HEIEFPDIP--EKDLQDVLKCCLKRDPKQRISIPELLAHPYVQI 326 (390)
T ss_dssp SCCCCCCCS--CHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHS
T ss_pred ccCCCCccc--hHHHHHHHHHHcccChhhCCCHHHHhhCcCccc
Confidence 211111110 124667888999999999999999999999864
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=304.49 Aligned_cols=219 Identities=25% Similarity=0.426 Sum_probs=167.5
Q ss_pred HcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC-ceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR-HSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~-~~~l 498 (667)
.++|...+.||+|+||.||+|.+. +..||||+++... ..+.|.+|++++++++|||||+++|++.+.+ ..++
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~------~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~i 264 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYI 264 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT------TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEE
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch------HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEE
Confidence 357888899999999999999886 6689999987532 2357999999999999999999999987765 7899
Q ss_pred EEEecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 499 IYEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
||||+++|+|.+++..... ..|.||||+|||++.++.+||+|||+++.....
T Consensus 265 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~-- 342 (450)
T 1k9a_A 265 VTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST-- 342 (450)
T ss_dssp EEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCTTCEECC----
T ss_pred EEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCccccccc--
Confidence 9999999999988864321 113499999999999999999999999864322
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
.....+|+.|+||| |+.++|||||||++|||+| |+.||...... .... .+........+...
T Consensus 343 -~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~----~~~~-~i~~~~~~~~p~~~----- 411 (450)
T 1k9a_A 343 -QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK----DVVP-RVEKGYKMDAPDGC----- 411 (450)
T ss_dssp -----CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTT----THHH-HHHTTCCCCCCTTC-----
T ss_pred -ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH----HHHH-HHHcCCCCCCCCcC-----
Confidence 22346789999999 6789999999999999999 99998643211 1111 11111111222222
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
...+.+++.+||+.||++|||+.|+++.|....
T Consensus 412 -~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~ 444 (450)
T 1k9a_A 412 -PPAVYDVMKNCWHLDAATRPTFLQLREQLEHIR 444 (450)
T ss_dssp -CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 225677888999999999999999999887653
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=299.21 Aligned_cols=227 Identities=20% Similarity=0.283 Sum_probs=160.4
Q ss_pred HcCCcCc-ceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHH-hcCCCCeeEEEEEEEe----
Q 042735 420 INDFDAK-YCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT-KIRHRNIVKFYGFCSH---- 492 (667)
Q Consensus 420 ~~~f~~~-~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~-~l~H~niv~~~g~~~~---- 492 (667)
.++|... +.||+|+||.||+|... +++.||||++... ..+.+|++++. ..+|||||++++++..
T Consensus 60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~---------~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~ 130 (400)
T 1nxk_A 60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC---------PKARREVELHWRASQCPHIVRIVDVYENLYAG 130 (400)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS---------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETT
T ss_pred cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc---------hhHHHHHHHHHHhcCCCCcceEeEEEeecccC
Confidence 3566665 68999999999999864 5788999998531 24678888875 4579999999999875
Q ss_pred CCceEEEEEecCCCChHHHhcccc---C-----------------------CcccccccCCeeecC---CCceEEecccc
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDA---A-----------------------AEELDISSKNVLLDL---EHKAHVSDFGI 543 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~---~-----------------------~~~~dlk~~NiLld~---~~~~kl~DFGl 543 (667)
....++||||+++|+|.+++.... . ..|.||||+|||++. ++.+||+|||+
T Consensus 131 ~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~ 210 (400)
T 1nxk_A 131 RKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGF 210 (400)
T ss_dssp EEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTT
T ss_pred CcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEeccc
Confidence 567899999999999998886432 1 113499999999997 78999999999
Q ss_pred cccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCC
Q 042735 544 AKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617 (667)
Q Consensus 544 a~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (667)
++...... ..+..+||+.|+||| |+.++|||||||++|||+||+.||..................... ..+
T Consensus 211 a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~--~~~ 287 (400)
T 1nxk_A 211 AKETTSHN-SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQY--EFP 287 (400)
T ss_dssp CEECC------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCC--CCC
T ss_pred ccccCCCC-ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcc--cCC
Confidence 98754332 234678999999999 577899999999999999999998643322111111111111111 111
Q ss_pred CCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.+ ........+.+++.+||+.||++|||++|++++.|+...
T Consensus 288 ~~--~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~~ 328 (400)
T 1nxk_A 288 NP--EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQS 328 (400)
T ss_dssp TT--TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHTT
T ss_pred Cc--ccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCccccCC
Confidence 11 111112346788889999999999999999999998643
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=292.55 Aligned_cols=224 Identities=21% Similarity=0.385 Sum_probs=162.3
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCce----EEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEF----LAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~----~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
++|+..+.||+|+||.||+|+.. ++.. ||+|.+..... ....+.|.+|+.++++++|||||+++++|.+..
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~- 90 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS---PKANKEILDEAYVMASVDNPHVCRLLGICLTST- 90 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC----------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccC---HHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-
Confidence 57888999999999999999864 3443 58887754321 233467999999999999999999999998764
Q ss_pred eEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
.++|+||+++|+|.+++.... ...|.||||+|||++.++.+||+|||+++.....
T Consensus 91 ~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~ 170 (327)
T 3poz_A 91 VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAE 170 (327)
T ss_dssp EEEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTT
T ss_pred eEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEccCcceeEccCC
Confidence 788999999999998875421 1124499999999999999999999999876543
Q ss_pred CCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 551 SSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 551 ~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
... .....||+.|+||| |+.++|||||||++|||+| |+.||...... .. ...+........+..
T Consensus 171 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~----~~-~~~~~~~~~~~~~~~-- 243 (327)
T 3poz_A 171 EKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS----EI-SSILEKGERLPQPPI-- 243 (327)
T ss_dssp CC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG----GH-HHHHHTTCCCCCCTT--
T ss_pred cccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHH----HH-HHHHHcCCCCCCCcc--
Confidence 322 23345788999999 6789999999999999999 99998643211 11 111111111111111
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
....+.+++.+||+.+|++|||+.|+++++....
T Consensus 244 ----~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~ 277 (327)
T 3poz_A 244 ----CTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMA 277 (327)
T ss_dssp ----BCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 1225677888999999999999999999987653
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=289.27 Aligned_cols=226 Identities=24% Similarity=0.413 Sum_probs=172.4
Q ss_pred HcCCcCcceeecccCeEEEEEEe------CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA 493 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~------~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~ 493 (667)
.++|...+.||+|+||.||+|.. .++..||||++.... .....+.+.+|++++++++|||||++++++.+.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~ 98 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA---SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQD 98 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC---CHHHHHHHHHHHHHHhhCCCCceeeEEEEEecC
Confidence 35788889999999999999975 234789999986532 233456799999999999999999999999999
Q ss_pred CceEEEEEecCCCChHHHhccccC------------------------------------------------Cccccccc
Q 042735 494 RHSILIYEYLKRGSLATNLSNDAA------------------------------------------------AEELDISS 525 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~~------------------------------------------------~~~~dlk~ 525 (667)
+..++||||+++|+|.+++..... ..|.||||
T Consensus 99 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dikp 178 (314)
T 2ivs_A 99 GPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAA 178 (314)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECCCCSG
T ss_pred CceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCcccccch
Confidence 999999999999999988864211 11239999
Q ss_pred CCeeecCCCceEEecccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCcc
Q 042735 526 KNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSS 596 (667)
Q Consensus 526 ~NiLld~~~~~kl~DFGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~ 596 (667)
+||+++.++.+||+|||+++........ .....||+.|+||| |+.++|||||||++|||+| |+.||.....
T Consensus 179 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~ 258 (314)
T 2ivs_A 179 RNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP 258 (314)
T ss_dssp GGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred heEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence 9999999999999999999876543221 23346788999999 6789999999999999999 9999863321
Q ss_pred CCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 597 ILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..... .......+..+... ...+.+++.+||+.||++|||++|++++|....
T Consensus 259 ----~~~~~-~~~~~~~~~~~~~~------~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~ 310 (314)
T 2ivs_A 259 ----ERLFN-LLKTGHRMERPDNC------SEEMYRLMLQCWKQEPDKRPVFADISKDLEKMM 310 (314)
T ss_dssp ----GGHHH-HHHTTCCCCCCTTC------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ----HHHHH-HhhcCCcCCCCccC------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 11111 11111111222211 124667888999999999999999999987653
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=288.96 Aligned_cols=249 Identities=27% Similarity=0.457 Sum_probs=210.2
Q ss_pred CCCCEEEccCccccc--cCCccccCCCCCCeeeccc-cccceeCCCCCcc-cccCEEEcccccccccCCccccCCCCccE
Q 042735 27 KSLVKLGLGGNQFRG--SLPSSVGNLSSLRYLFLFE-NNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALER 102 (667)
Q Consensus 27 ~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 102 (667)
.+++.|+|++|.+++ .+|..|+++++|++|+|++ |.+.+.+|..++. .+|++|+|++|.+++.+|..+..+.+|+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 567888888888877 7778888888888888884 7777777777766 45888888888888778888888888888
Q ss_pred EEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCC-CCCEEECcCCccCCccCccCCCCCCCCEEEccCCc
Q 042735 103 VIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYL-NLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNN 181 (667)
Q Consensus 103 L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 181 (667)
|++++|.+++.+|..+..+++|++|+|++|.+++.+|..+..++ +|++|++++|.+.+.+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 88888888888888888888888899888888888888888887 888999998888888888888887 9999999998
Q ss_pred CCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhh
Q 042735 182 ITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPES 261 (667)
Q Consensus 182 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 261 (667)
+++..|..+.++++|+.|+|++|.+.+.+|. +..+++|+.|++++|++++.+|..+..+++|++|+|++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 8888888888899999999999988876655 788889999999999998888988999999999999999998888876
Q ss_pred hhcccCCCeecCCCccC
Q 042735 262 LGNLLKLHYLDLSKYQF 278 (667)
Q Consensus 262 ~~~l~~L~~L~ls~n~~ 278 (667)
..+++|+.+++++|+.
T Consensus 288 -~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKC 303 (313)
T ss_dssp -TTGGGSCGGGTCSSSE
T ss_pred -ccccccChHHhcCCCC
Confidence 7888999999998874
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=287.96 Aligned_cols=222 Identities=27% Similarity=0.493 Sum_probs=162.6
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|+..+.||+|+||.||+|+.. ++.||||++... ...+.|.+|++++++++|||||+++|++. +..++||
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~------~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~ 78 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE------SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVM 78 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST------THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEE
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh------hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEE
Confidence 57888899999999999999885 677999998542 23467999999999999999999999886 4589999
Q ss_pred EecCCCChHHHhcccc------------------------------CCcccccccCCeeecCCCc-eEEecccccccccC
Q 042735 501 EYLKRGSLATNLSNDA------------------------------AAEELDISSKNVLLDLEHK-AHVSDFGIAKFLKP 549 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~------------------------------~~~~~dlk~~NiLld~~~~-~kl~DFGla~~~~~ 549 (667)
||+++|+|.+++.... ...|.||||+||+++.++. +||+|||+++....
T Consensus 79 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~ 158 (307)
T 2eva_A 79 EYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT 158 (307)
T ss_dssp ECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------
T ss_pred EcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccccc
Confidence 9999999988775321 1235599999999998886 79999999986543
Q ss_pred CCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 550 DSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
. .....||+.|+||| |+.++|||||||++|||+||+.||...... ...... .......+..+...+
T Consensus 159 ~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~-- 230 (307)
T 2eva_A 159 H---MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGP--AFRIMW-AVHNGTRPPLIKNLP-- 230 (307)
T ss_dssp ---------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSS--HHHHHH-HHHTTCCCCCBTTCC--
T ss_pred c---cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCcc--HHHHHH-HHhcCCCCCcccccC--
Confidence 2 23457999999999 577999999999999999999998632210 000000 111111111111111
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
..+.+++.+||+.+|++|||++|+++.|.....++.
T Consensus 231 ----~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~ 266 (307)
T 2eva_A 231 ----KPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFP 266 (307)
T ss_dssp ----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCC
T ss_pred ----HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhcc
Confidence 246678889999999999999999999988776654
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=287.34 Aligned_cols=226 Identities=24% Similarity=0.374 Sum_probs=175.8
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
+.|+..+.||+|+||.||+|.. .+++.||||.+...... ...+.+.+|+.++++++||||+++++++.+....++|
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 98 (303)
T 3a7i_A 22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAE---DEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWII 98 (303)
T ss_dssp GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCS---TTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccH---HHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEE
Confidence 4578889999999999999976 46888999998654322 2346799999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 500 YEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
|||+++|+|.+.+..... ..|.||||+||+++.++.+||+|||+++...........
T Consensus 99 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~ 178 (303)
T 3a7i_A 99 MEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNT 178 (303)
T ss_dssp EECCTTEEHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCCBCC
T ss_pred EEeCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeecccceecCccccccCc
Confidence 999999999988764321 123499999999999999999999999876554434455
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
..||+.|+||| ++.++|||||||++|||+||+.||..... ............+..+...+ ..+
T Consensus 179 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~------~~l 247 (303)
T 3a7i_A 179 FVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHP-----MKVLFLIPKNNPPTLEGNYS------KPL 247 (303)
T ss_dssp CCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-----HHHHHHHHHSCCCCCCSSCC------HHH
T ss_pred cCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCH-----HHHHHHhhcCCCCCCccccC------HHH
Confidence 68999999999 56789999999999999999999863221 11111111111122222221 246
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.+++.+||+.+|++|||+.|++++.|+...
T Consensus 248 ~~li~~~l~~dp~~Rps~~~ll~~~~~~~~ 277 (303)
T 3a7i_A 248 KEFVEACLNKEPSFRPTAKELLKHKFILRN 277 (303)
T ss_dssp HHHHHHHCCSSGGGSCCHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCChhhCcCHHHHhhChhhhcC
Confidence 678889999999999999999999998654
|
| >3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=296.68 Aligned_cols=242 Identities=19% Similarity=0.284 Sum_probs=166.3
Q ss_pred HHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
..++|...+.||+|+||.||+|.. .+++.||||++..... .....+.+.+|++++++++|||||++++++.+.+..+
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 109 (329)
T 3gbz_A 32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHE--EEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH 109 (329)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC----------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEccccc--ccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence 457899999999999999999975 5688899999865432 2223456889999999999999999999999999999
Q ss_pred EEEEecCCCChHHHhcccc------------------------CCcccccccCCeeec-----CCCceEEeccccccccc
Q 042735 498 LIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLD-----LEHKAHVSDFGIAKFLK 548 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld-----~~~~~kl~DFGla~~~~ 548 (667)
+||||++ |+|.+.+.... ...|.||||+|||++ .++.+||+|||+++...
T Consensus 110 lv~e~~~-~~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~ 188 (329)
T 3gbz_A 110 LIFEYAE-NDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFG 188 (329)
T ss_dssp EEEECCS-EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC
T ss_pred EEEecCC-CCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccC
Confidence 9999998 48887765431 122459999999994 55569999999998765
Q ss_pred CCCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhh----------hccc
Q 042735 549 PDSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR----------LDEM 611 (667)
Q Consensus 549 ~~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~----------~~~~ 611 (667)
..........||+.|+||| |+.++|||||||++|||+||+.||................ ....
T Consensus 189 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (329)
T 3gbz_A 189 IPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTAL 268 (329)
T ss_dssp -----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGGS
T ss_pred CcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhhh
Confidence 4444445568899999999 5778999999999999999999986322110000000000 0000
Q ss_pred --cCCCCCCCCC-chHH-----HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 612 --LDPRLPPPSP-DVQG-----KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 612 --~~~~~~~~~~-~~~~-----~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
.....+.... .... ....+.+++.+||+.||++|||++|++++.||....|+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~ 328 (329)
T 3gbz_A 269 PDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEHPYFSHNDFD 328 (329)
T ss_dssp TTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSSCSC
T ss_pred hhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhCCcccCCCCCC
Confidence 0000000000 0000 11356788999999999999999999999999887764
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=323.58 Aligned_cols=307 Identities=24% Similarity=0.217 Sum_probs=186.2
Q ss_pred CCCCcEEeccCCcCcC-CCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCC--Ccc-cccC
Q 042735 2 LTNLRELHLRDNYLTG-LIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPS--VGN-LMLT 77 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--~~~-~~L~ 77 (667)
+++|+.|+|++|.+.+ +.|..|.++++|++|+|++|.|.+..|.+|+++++|++|+|++|.+++.+|.. +.. .+|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 4566666666664332 23555666666666666666666655666666666666666666665544432 433 3466
Q ss_pred EEEcccccccccCC-ccccCCCCccEEEeeCcccccccCccC--------------------------CCC---------
Q 042735 78 VLALENNHFTGNLR-HNICRNGALERVIVGGNHFRGPIPKCL--------------------------RNC--------- 121 (667)
Q Consensus 78 ~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~p~~l--------------------------~~l--------- 121 (667)
.|+|++|.+++..+ ..+.++++|+.|++++|.+++..|..+ ..+
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 66666666654433 345555556666555555543322211 111
Q ss_pred -----------------------------------------------------------CCCcEEEccCCccccccchhh
Q 042735 122 -----------------------------------------------------------PNLVRISLEGNNMRGTISEAF 142 (667)
Q Consensus 122 -----------------------------------------------------------~~L~~L~L~~n~~~~~~~~~~ 142 (667)
++|+.|+|++|.+++..+..|
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 345556666666655556666
Q ss_pred hcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccce
Q 042735 143 GIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTK 222 (667)
Q Consensus 143 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 222 (667)
..+++|+.|+|++|.+.+..+..|..+++|+.|+|++|.+.+..|..|.++++|+.|++++|.+.+..+..|.++++|+.
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 66777777777777776666667777777777777777777666667777777777777777776666666777777777
Q ss_pred eecccccccccC------------------c----------------------ccccCCCCCCeeeccCCcCCcc-----
Q 042735 223 LILRGNQLIGHL------------------P----------------------SEIGSLTKLEFLNLSTNRFSSL----- 257 (667)
Q Consensus 223 L~L~~n~l~~~~------------------p----------------------~~~~~l~~L~~L~Ls~N~l~~~----- 257 (667)
|+|++|.+++.. | ..++.+++|+.|+|++|++++.
T Consensus 367 L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 446 (844)
T 3j0a_A 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446 (844)
T ss_dssp EEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS
T ss_pred EECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc
Confidence 777777654311 0 0122455555555555555432
Q ss_pred -------------------------chhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCcCcc
Q 042735 258 -------------------------IPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPS 308 (667)
Q Consensus 258 -------------------------~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ip~ 308 (667)
.+..+.++++|+.|+|++|++.+..|..+..+++|+.|++++|.+++..|.
T Consensus 447 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 522 (844)
T 3j0a_A 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN 522 (844)
T ss_dssp SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCC
T ss_pred cccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChh
Confidence 123355566677777777776666666777778888888888877654443
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=287.11 Aligned_cols=229 Identities=21% Similarity=0.300 Sum_probs=172.8
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|... ++..+|+|++..... .....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v 83 (284)
T 3kk8_A 6 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKL--SARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 83 (284)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccC--CHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEE
Confidence 67889999999999999999864 578899998864332 223456788999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCc---eEEecccccccccCCCC
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHK---AHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~---~kl~DFGla~~~~~~~~ 552 (667)
|||+++|+|.+.+.... ...|.||||+||+++.++. +||+|||++.......
T Consensus 84 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~- 162 (284)
T 3kk8_A 84 FDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSE- 162 (284)
T ss_dssp ECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSC-
T ss_pred EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCc-
Confidence 99999999977664321 1124499999999986655 9999999998765332
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
......||+.|+||| |+.++||||||+++|||++|+.||..... ............. .+. +.....
T Consensus 163 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~----~~~~~~~~~~~~~--~~~--~~~~~~ 234 (284)
T 3kk8_A 163 AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ----HRLYAQIKAGAYD--YPS--PEWDTV 234 (284)
T ss_dssp BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHHTCCC--CCT--TTTTTS
T ss_pred cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCch----hHHHHHHHhcccc--CCc--hhhccc
Confidence 234567999999999 57789999999999999999999853221 1111111111111 111 111111
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
...+.+++.+||+.||++|||++|++++.|+...
T Consensus 235 ~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~ 268 (284)
T 3kk8_A 235 TPEAKSLIDSMLTVNPKKRITADQALKVPWICNR 268 (284)
T ss_dssp CHHHHHHHHHHSCSSTTTSCCHHHHTTSHHHHSC
T ss_pred CHHHHHHHHHHcccChhhCCCHHHHhcCccccCC
Confidence 2346678889999999999999999999998754
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-34 Score=289.46 Aligned_cols=228 Identities=24% Similarity=0.400 Sum_probs=172.4
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe--CCce
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH--ARHS 496 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~--~~~~ 496 (667)
.++|+..+.||+|+||.||+|... +++.+|+|++...... ....+.+.+|++++++++||||+++++++.+ ....
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~ 82 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMT--EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTL 82 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCC--HHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceE
Confidence 467889999999999999999874 6788999998654322 2345679999999999999999999998854 5678
Q ss_pred EEEEEecCCCChHHHhcccc----------------------------C-----CcccccccCCeeecCCCceEEecccc
Q 042735 497 ILIYEYLKRGSLATNLSNDA----------------------------A-----AEELDISSKNVLLDLEHKAHVSDFGI 543 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~----------------------------~-----~~~~dlk~~NiLld~~~~~kl~DFGl 543 (667)
++||||+++|+|.+.+.... . ..|.||||+||+++.++.+||+|||+
T Consensus 83 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~ 162 (279)
T 2w5a_A 83 YIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGL 162 (279)
T ss_dssp EEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCH
T ss_pred EEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCch
Confidence 99999999999988764210 1 34559999999999999999999999
Q ss_pred cccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCC
Q 042735 544 AKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617 (667)
Q Consensus 544 a~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (667)
++.............||+.|+||| ++.++||||||+++|||+||+.||..... ..... .+.....+.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~-~i~~~~~~~~~ 237 (279)
T 2w5a_A 163 ARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ----KELAG-KIREGKFRRIP 237 (279)
T ss_dssp HHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHH-HHHHTCCCCCC
T ss_pred heeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCH----HHHHH-HHhhcccccCC
Confidence 987654332233467999999999 57789999999999999999999864321 11111 11111111222
Q ss_pred CCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
...+ ..+.+++.+||+.+|++|||++||++++++...
T Consensus 238 ~~~~------~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~~ 274 (279)
T 2w5a_A 238 YRYS------DELNEIITRMLNLKDYHRPSVEEILENPLILEH 274 (279)
T ss_dssp TTSC------HHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCGG
T ss_pred cccC------HHHHHHHHHHcCCCcccCCCHHHHHhChhhhhh
Confidence 2111 246678889999999999999999999887644
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=292.64 Aligned_cols=231 Identities=17% Similarity=0.231 Sum_probs=174.2
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCch--HHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQ--IADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
++|+..+.||+|+||.||+|... ++..+|||.+........ ....+.+.+|++++++++||||+++++++.+.+..+
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 91 (321)
T 2a2a_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV 91 (321)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence 56888999999999999999875 578899998865432111 113467999999999999999999999999999999
Q ss_pred EEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCC----ceEEecccccccccC
Q 042735 498 LIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEH----KAHVSDFGIAKFLKP 549 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~----~~kl~DFGla~~~~~ 549 (667)
+||||+++|+|.+++..... ..|.||||+||+++.++ .+||+|||+++....
T Consensus 92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~ 171 (321)
T 2a2a_A 92 LILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED 171 (321)
T ss_dssp EEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCT
T ss_pred EEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCccceecCc
Confidence 99999999999988764321 12349999999999888 799999999987654
Q ss_pred CCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 550 DSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
.. ......||+.|+||| |+.++|||||||++|||+||+.||..... .... ..+.......+....
T Consensus 172 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~----~~~~----~~i~~~~~~~~~~~~ 242 (321)
T 2a2a_A 172 GV-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK----QETL----ANITSVSYDFDEEFF 242 (321)
T ss_dssp TC-CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH----HHHH----HHHHTTCCCCCHHHH
T ss_pred cc-cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCH----HHHH----HHHHhcccccChhhh
Confidence 32 234567999999999 57789999999999999999999853221 0111 111111111100000
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
......+.+++.+||+.||++|||++|++++.|+...
T Consensus 243 ~~~~~~~~~li~~~l~~dp~~Rps~~e~l~hp~~~~~ 279 (321)
T 2a2a_A 243 SHTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPV 279 (321)
T ss_dssp TTCCHHHHHHHHTTSCSSTTTSCCHHHHHHSTTTSCS
T ss_pred cccCHHHHHHHHHHcCCChhhCcCHHHHhcCccccCC
Confidence 1112346788889999999999999999999988643
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=293.68 Aligned_cols=226 Identities=23% Similarity=0.356 Sum_probs=167.1
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCC--CCeeEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH--RNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H--~niv~~~g~~~~~~~~~l 498 (667)
..|+..+.||+|+||.||+|...++..||||++..... .....+.+.+|++++.+++| ||||++++++.+....++
T Consensus 9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 86 (343)
T 3dbq_A 9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 86 (343)
T ss_dssp CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeecccc--chHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEE
Confidence 45888899999999999999988899999999865432 23345679999999999987 999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC--
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-- 552 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-- 552 (667)
||| +.+|+|.+++.... ...|.||||+|||++ ++.+||+|||+++.......
T Consensus 87 v~e-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~ 164 (343)
T 3dbq_A 87 VME-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSV 164 (343)
T ss_dssp EEC-CCSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC-------
T ss_pred EEe-CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-CCcEEEeecccccccCcccccc
Confidence 999 56789988775432 122459999999997 67899999999987654322
Q ss_pred CcccccccccccCCCC-----------------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCC
Q 042735 553 NWSALVGTYRYVAPDY-----------------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPR 615 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE~-----------------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (667)
.....+||+.|+|||+ +.++|||||||++|||+||+.||..... ... .....+++.
T Consensus 165 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~---~~~----~~~~~~~~~ 237 (343)
T 3dbq_A 165 VKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN---QIS----KLHAIIDPN 237 (343)
T ss_dssp -----CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCS---HHH----HHHHHHCTT
T ss_pred cCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhh---HHH----HHHHHhcCC
Confidence 2235689999999993 3478999999999999999999853211 001 111222222
Q ss_pred CCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 616 LPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.....+... ...+.+++.+||+.||++|||+.|++++.|+..
T Consensus 238 ~~~~~~~~~--~~~l~~li~~~L~~dp~~Rpt~~e~l~hp~~~~ 279 (343)
T 3dbq_A 238 HEIEFPDIP--EKDLQDVLKCCLKRDPKQRISIPELLAHPYVQI 279 (343)
T ss_dssp SCCCCCCCS--CHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHS
T ss_pred cccCCcccC--CHHHHHHHHHHcCCChhHCCCHHHHHhCccccc
Confidence 111111100 124667888999999999999999999999864
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=310.14 Aligned_cols=157 Identities=19% Similarity=0.183 Sum_probs=86.6
Q ss_pred CCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcc
Q 042735 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALE 82 (667)
Q Consensus 4 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~ 82 (667)
+|+.|+|++|.++++.|..|.++++|++|+|++|++++..|.+|+++++|++|+|++|++++..|..++. .+|++|+|+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 4566666666666555555666666666666666666555556666666666666666665444443444 346666666
Q ss_pred cccccc-cCCccccCCCCccEEEeeCcccccccC-ccCCCCCCCcEEEccCCccccccchhh------------------
Q 042735 83 NNHFTG-NLRHNICRNGALERVIVGGNHFRGPIP-KCLRNCPNLVRISLEGNNMRGTISEAF------------------ 142 (667)
Q Consensus 83 ~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~L~~n~~~~~~~~~~------------------ 142 (667)
+|.+++ ..+..+..+.+|+.|++++|.+.+.+| ..+.++++|++|++++|.+++..|..+
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 186 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc
Confidence 665554 234445555555555555555322232 345555555555555555554443333
Q ss_pred ------hcCCCCCEEECcCCccCC
Q 042735 143 ------GIYLNLTFLDISDNNFFG 160 (667)
Q Consensus 143 ------~~l~~L~~L~L~~n~l~~ 160 (667)
..+++|++|++++|.+.+
T Consensus 187 ~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 187 LLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp HHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cchhhHhhcccccEEEccCCcccc
Confidence 345666666666666654
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=309.22 Aligned_cols=223 Identities=24% Similarity=0.412 Sum_probs=171.2
Q ss_pred HcCCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|...+.||+|+||.||+|.+.. +..||||.+.... ...+.|.+|++++++++|||||+++|+|.+.+..++
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~l 293 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYI 293 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-----SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-----cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEE
Confidence 3568888999999999999998765 7889999986532 124579999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 499 IYEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
||||+++|+|.+++..... ..|.||||+|||++.++.+||+|||+++.......
T Consensus 294 v~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~ 373 (495)
T 1opk_A 294 ITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTY 373 (495)
T ss_dssp EEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCE
T ss_pred EEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeecccceeccCCce
Confidence 9999999999998864210 12349999999999999999999999987643321
Q ss_pred -CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchH
Q 042735 553 -NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624 (667)
Q Consensus 553 -~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (667)
......+|+.|+||| |+.++|||||||++|||+| |+.||..... ..... .+........+...
T Consensus 374 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~----~~~~~-~~~~~~~~~~~~~~---- 444 (495)
T 1opk_A 374 TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL----SQVYE-LLEKDYRMERPEGC---- 444 (495)
T ss_dssp ECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG----GGHHH-HHHTTCCCCCCTTC----
T ss_pred eecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCH----HHHHH-HHHcCCCCCCCCCC----
Confidence 112345678999999 5779999999999999999 9999764321 11111 11111111112211
Q ss_pred HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
...+.+++.+||+.+|++||||.||++.|...
T Consensus 445 --~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~ 476 (495)
T 1opk_A 445 --PEKVYELMRACWQWNPSDRPSFAEIHQAFETM 476 (495)
T ss_dssp --CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred --CHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 12466788899999999999999999988754
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=293.54 Aligned_cols=228 Identities=24% Similarity=0.384 Sum_probs=171.3
Q ss_pred HcCCcCcceeecccCeEEEEEEe------CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEe
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSH 492 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~------~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~ 492 (667)
.++|...+.||+|+||.||+|.. ..+..||||.+..... ....+.+.+|++++.++ +||||+++++++..
T Consensus 44 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~ 120 (344)
T 1rjb_A 44 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD---SSEREALMSELKMMTQLGSHENIVNLLGACTL 120 (344)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC---------CHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred HHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccC---HHHHHHHHHHHHHHHhhcCCCCeeeEEEEEee
Confidence 36788899999999999999985 2345799999875322 22345799999999999 89999999999999
Q ss_pred CCceEEEEEecCCCChHHHhccccC-----------------------------------------------Cccccccc
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDAA-----------------------------------------------AEELDISS 525 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~~-----------------------------------------------~~~~dlk~ 525 (667)
.+..++||||+++|+|.+++..... ..|.||||
T Consensus 121 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp 200 (344)
T 1rjb_A 121 SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAA 200 (344)
T ss_dssp SSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSG
T ss_pred CCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCh
Confidence 9999999999999999998864321 01239999
Q ss_pred CCeeecCCCceEEecccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCcc
Q 042735 526 KNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSS 596 (667)
Q Consensus 526 ~NiLld~~~~~kl~DFGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~ 596 (667)
+||+++.++.+||+|||+++........ .....||+.|+||| |+.++|||||||++|||+| |+.||.....
T Consensus 201 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~ 280 (344)
T 1rjb_A 201 RNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV 280 (344)
T ss_dssp GGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC
T ss_pred hhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCc
Confidence 9999999999999999999876543322 23456788999999 6789999999999999998 9999864321
Q ss_pred CCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 597 ILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.............+..+...+ ..+.+++.+||+.||++|||+.|++++|.....
T Consensus 281 ----~~~~~~~~~~~~~~~~~~~~~------~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~ 334 (344)
T 1rjb_A 281 ----DANFYKLIQNGFKMDQPFYAT------EEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLA 334 (344)
T ss_dssp ----SHHHHHHHHTTCCCCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC-
T ss_pred ----HHHHHHHHhcCCCCCCCCCCC------HHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHH
Confidence 111111111111222222111 246678889999999999999999999987543
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=285.04 Aligned_cols=226 Identities=22% Similarity=0.346 Sum_probs=168.6
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|....+||+|+||.||+|.. .++..||||++..... ...+.+.+|+.++++++|||||++++++.+.+..++|
T Consensus 22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 97 (295)
T 2clq_A 22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDS----RYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIF 97 (295)
T ss_dssp CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC-------HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCch----HHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEE
Confidence 3455667899999999999986 5578899998865321 2345789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC---------------------------CcccccccCCeeecC-CCceEEecccccccccCCC
Q 042735 500 YEYLKRGSLATNLSNDAA---------------------------AEELDISSKNVLLDL-EHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~---------------------------~~~~dlk~~NiLld~-~~~~kl~DFGla~~~~~~~ 551 (667)
|||+++|+|.+.+..... ..|.||||+||+++. ++.+||+|||+++......
T Consensus 98 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~ 177 (295)
T 2clq_A 98 MEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGIN 177 (295)
T ss_dssp EECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC--
T ss_pred EEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeecccccccCCCC
Confidence 999999999988754310 113399999999997 8999999999998765433
Q ss_pred CCcccccccccccCCC--------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 552 SNWSALVGTYRYVAPD--------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE--------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
.......||+.|+||| ++.++|||||||++|||+||+.||...... .............+..+...+
T Consensus 178 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~~~~~~~~~~~~~~~~~~~~-- 252 (295)
T 2clq_A 178 PCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEP---QAAMFKVGMFKVHPEIPESMS-- 252 (295)
T ss_dssp ---CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSH---HHHHHHHHHHCCCCCCCTTSC--
T ss_pred CcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCch---hHHHHhhccccccccccccCC--
Confidence 3344568999999999 466899999999999999999997532110 000000001111222332222
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..+.+++.+||+.||++|||++|++++.|+..
T Consensus 253 ----~~~~~li~~~l~~dp~~Rps~~~ll~~~~~~~ 284 (295)
T 2clq_A 253 ----AEAKAFILKCFEPDPDKRACANDLLVDEFLKV 284 (295)
T ss_dssp ----HHHHHHHHHTTCSSTTTSCCHHHHHTSGGGCC
T ss_pred ----HHHHHHHHHHccCChhhCCCHHHHhcChhhhh
Confidence 24667888999999999999999999988864
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=304.24 Aligned_cols=221 Identities=23% Similarity=0.411 Sum_probs=164.4
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|...+.||+|+||.||+|.+.++..||||++..... ..+.|.+|++++++++|||||+++|++.+ +..++||
T Consensus 184 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~ 257 (452)
T 1fmk_A 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-----SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVT 257 (452)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-----CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEE
T ss_pred hHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-----CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEe
Confidence 56788889999999999999998888899999875321 23579999999999999999999999876 6789999
Q ss_pred EecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC-C
Q 042735 501 EYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-N 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~ 553 (667)
||+++|+|.+++.... ...|.||||+|||++.++.+||+|||+++....... .
T Consensus 258 e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~ 337 (452)
T 1fmk_A 258 EYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 337 (452)
T ss_dssp CCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC---------
T ss_pred hhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCccceecCCCceec
Confidence 9999999998886321 112449999999999999999999999987653321 1
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....||+.|+||| |+.++|||||||++|||+| |+.||..... ...... +........+...
T Consensus 338 ~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~----~~~~~~-i~~~~~~~~~~~~------ 406 (452)
T 1fmk_A 338 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN----REVLDQ-VERGYRMPCPPEC------ 406 (452)
T ss_dssp -----CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH----HHHHHH-HHTTCCCCCCTTS------
T ss_pred ccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCH----HHHHHH-HHcCCCCCCCCCC------
Confidence 22345788999999 6789999999999999999 9999753221 111111 1111111112111
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
...+.+++.+||+.+|++|||++++++.|...
T Consensus 407 ~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~ 438 (452)
T 1fmk_A 407 PESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 438 (452)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 22466788899999999999999999988764
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=310.34 Aligned_cols=231 Identities=20% Similarity=0.323 Sum_probs=177.9
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|... +++.||||++....... ....+.+.+|++++++++|||||++++++.+.+..++|
T Consensus 26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~-~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQ-KTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCB-SSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhccc-chHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 57888999999999999999875 68899999986543221 22356799999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeee---cCCCceEEecccccccccCCCC
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLL---DLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLl---d~~~~~kl~DFGla~~~~~~~~ 552 (667)
|||+++|+|.+.+.... ...|.||||+|||+ +.++.+||+|||+++......
T Consensus 105 ~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~- 183 (484)
T 3nyv_A 105 GEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASK- 183 (484)
T ss_dssp ECCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCC-
T ss_pred EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEccccc-
Confidence 99999999988775432 12245999999999 567899999999998765433
Q ss_pred CcccccccccccCCC-----CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 553 NWSALVGTYRYVAPD-----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE-----~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
.....+||+.|+||| |+.++||||+||++|||+||+.||..... ..... .+.......+.+......
T Consensus 184 ~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~----~~~~~----~i~~~~~~~~~~~~~~~s 255 (484)
T 3nyv_A 184 KMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANE----YDILK----KVEKGKYTFELPQWKKVS 255 (484)
T ss_dssp SHHHHTTGGGTCCHHHHHTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHH----HHHHCCCCCCSGGGGGSC
T ss_pred ccccCCCCccccCceeecCCCCCcceeHHHHHHHHHHHHCCCCCCCCCH----HHHHH----HHHcCCCCCCCcccccCC
Confidence 234567999999999 78899999999999999999999864321 11111 111111111112222223
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
..+.+++.+||+.+|++|||+.|++++.|+....
T Consensus 256 ~~~~~li~~~L~~dp~~R~s~~e~l~h~~~~~~~ 289 (484)
T 3nyv_A 256 ESAKDLIRKMLTYVPSMRISARDALDHEWIQTYT 289 (484)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHHHT
T ss_pred HHHHHHHHHHCCCChhHCcCHHHHhhChhhcccc
Confidence 3567888999999999999999999999997654
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=287.68 Aligned_cols=227 Identities=24% Similarity=0.399 Sum_probs=173.1
Q ss_pred cCCcCcceeecccCeEEEEEEe------CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHA 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~------~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~ 493 (667)
++|...+.||+|+||.||+|.. .++..||||++..... ....+.+.+|+++++++ +||||+++++++.++
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~ 99 (313)
T 1t46_A 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH---LTEREALMSELKVLSYLGNHMNIVNLLGACTIG 99 (313)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchh---HHHHHHHHHHHHHHhhcccCCCeeeEEEEEecC
Confidence 5788889999999999999974 3457899999865322 23456799999999999 899999999999999
Q ss_pred CceEEEEEecCCCChHHHhccccC------------------------------------------CcccccccCCeeec
Q 042735 494 RHSILIYEYLKRGSLATNLSNDAA------------------------------------------AEELDISSKNVLLD 531 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~~------------------------------------------~~~~dlk~~NiLld 531 (667)
+..++||||+++|+|.+++..... ..|.||||+||+++
T Consensus 100 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~ 179 (313)
T 1t46_A 100 GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLT 179 (313)
T ss_dssp SSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEE
T ss_pred CCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEc
Confidence 999999999999999988754321 11339999999999
Q ss_pred CCCceEEecccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChh
Q 042735 532 LEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPS 602 (667)
Q Consensus 532 ~~~~~kl~DFGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~ 602 (667)
.++.+||+|||+++........ .....||+.|+||| ++.++|||||||++|||+| |+.||..... ..
T Consensus 180 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~----~~ 255 (313)
T 1t46_A 180 HGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPV----DS 255 (313)
T ss_dssp TTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCS----SH
T ss_pred CCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccc----hh
Confidence 9999999999999876544321 23456788999999 5779999999999999999 9999763321 11
Q ss_pred hhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 603 VINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..............+... ...+.+++.+||+.||++|||+.|++++|.....
T Consensus 256 ~~~~~~~~~~~~~~~~~~------~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 307 (313)
T 1t46_A 256 KFYKMIKEGFRMLSPEHA------PAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQIS 307 (313)
T ss_dssp HHHHHHHHTCCCCCCTTS------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCCcccC------CHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHH
Confidence 111111111122112111 1246678889999999999999999999876543
|
| >3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=296.68 Aligned_cols=237 Identities=16% Similarity=0.247 Sum_probs=162.7
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|+.. +++.||||++...... .....+.+|++++++++|||||++++++.+.+..++|
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 78 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEE---GAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLV 78 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC---------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEeccccc---ccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEE
Confidence 57888999999999999999875 6788999988643211 1112456899999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||++ |+|.+.+.... ...|.||||+||+++.++.+||+|||+++.........
T Consensus 79 ~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~ 157 (324)
T 3mtl_A 79 FEYLD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTY 157 (324)
T ss_dssp EECCS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEECC-------
T ss_pred ecccc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCcccccccCCcccc
Confidence 99998 58877664321 11234999999999999999999999998765444444
Q ss_pred ccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh----------------hhccc
Q 042735 555 SALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM----------------RLDEM 611 (667)
Q Consensus 555 ~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~----------------~~~~~ 611 (667)
....||+.|+||| |+.++|||||||++|||+||+.||...........+... .....
T Consensus 158 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 237 (324)
T 3mtl_A 158 DNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTY 237 (324)
T ss_dssp -----CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHT
T ss_pred ccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhccc
Confidence 5568999999999 467899999999999999999998632210000000000 00000
Q ss_pred cCCCCCCCC--CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 612 LDPRLPPPS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 612 ~~~~~~~~~--~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
..+...... .........+.+++.+||+.||++|||++|++++.||....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~ 289 (324)
T 3mtl_A 238 NYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLG 289 (324)
T ss_dssp CCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGC
T ss_pred ccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcChhhhhcc
Confidence 000000000 00001113467888999999999999999999999997653
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=309.81 Aligned_cols=229 Identities=21% Similarity=0.355 Sum_probs=169.6
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
+.|...+.||+|+||.||+|+.. ++..+|||++....... .....+.+|+.++++++|||||++++++.+....++|
T Consensus 37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 114 (494)
T 3lij_A 37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVST--SSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLV 114 (494)
T ss_dssp HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-------CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCc--hHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 46888999999999999999875 67889999986543211 1245688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecC---CCceEEecccccccccCCCC
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDL---EHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~---~~~~kl~DFGla~~~~~~~~ 552 (667)
|||+++|+|.+.+.... ...|.||||+|||++. ++.+||+|||+++......
T Consensus 115 ~e~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~- 193 (494)
T 3lij_A 115 MECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQK- 193 (494)
T ss_dssp EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTB-
T ss_pred EecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCc-
Confidence 99999999987664321 1224599999999976 4559999999998765432
Q ss_pred CcccccccccccCCC-----CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 553 NWSALVGTYRYVAPD-----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE-----~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
.....+||+.|+||| |+.++||||+||++|||++|+.||..... ..... .+.......+.+......
T Consensus 194 ~~~~~~gt~~y~aPE~l~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~----~~~~~----~i~~~~~~~~~~~~~~~s 265 (494)
T 3lij_A 194 KMKERLGTAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFGGQTD----QEILR----KVEKGKYTFDSPEWKNVS 265 (494)
T ss_dssp CBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHH----HHHHTCCCCCSGGGTTSC
T ss_pred cccccCCCcCeeCHHHHcccCCCchhHHHHHHHHHHHHhCCCCCCCCCH----HHHHH----HHHhCCCCCCchhcccCC
Confidence 234568999999999 68899999999999999999999864321 11111 111111111111111222
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..+.+++.+||+.+|++|||++|++++.|+...
T Consensus 266 ~~~~~li~~~L~~dp~~R~s~~e~l~hp~~~~~ 298 (494)
T 3lij_A 266 EGAKDLIKQMLQFDSQRRISAQQALEHPWIKEM 298 (494)
T ss_dssp HHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHCCCChhhCccHHHHhcCcccccC
Confidence 356788889999999999999999999998754
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=295.48 Aligned_cols=230 Identities=23% Similarity=0.331 Sum_probs=163.9
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc----
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH---- 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~---- 495 (667)
++|+..+.||+|+||.||+|+. .+++.||||++...... .....+.|.+|++++++++|||||++++++.....
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLAR-DPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTT-SHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccC-CHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 5788899999999999999986 66889999998764332 23345679999999999999999999999877554
Q ss_pred eEEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
.++||||+++|+|.+++.... ...|.||||+||+++.++.+||+|||+++......
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~ 170 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSG 170 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEEECCCSCC-------
T ss_pred cEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEEEeeccCcccccccc
Confidence 399999999999998875321 12245999999999999999999999998765432
Q ss_pred C---CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCc
Q 042735 552 S---NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622 (667)
Q Consensus 552 ~---~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (667)
. ......||+.|+||| |+.++|||||||++|||+||+.||..... .......... ...+ +...
T Consensus 171 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~----~~~~~~~~~~---~~~~-~~~~ 242 (311)
T 3ork_A 171 NSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSP----VSVAYQHVRE---DPIP-PSAR 242 (311)
T ss_dssp -----------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH----HHHHHHHHHC---CCCC-HHHH
T ss_pred cccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCh----HHHHHHHhcC---CCCC-cccc
Confidence 1 123457999999999 57789999999999999999999863221 0111111111 1111 0000
Q ss_pred hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 623 VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 623 ~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.......+.+++.+||+.||++||++.+++++.++..
T Consensus 243 ~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 279 (311)
T 3ork_A 243 HEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV 279 (311)
T ss_dssp STTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence 0011234667888999999999999998888877754
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-34 Score=304.98 Aligned_cols=234 Identities=20% Similarity=0.248 Sum_probs=162.8
Q ss_pred HHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCC----chHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPS----DQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA 493 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~----~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~ 493 (667)
..++|...+.||+|+||.||+|.. .+++.||||++...... ........+.+|++++++++|||||++++++. .
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-~ 211 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-A 211 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-S
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-c
Confidence 357899999999999999999976 45789999987542111 01112235889999999999999999999975 4
Q ss_pred CceEEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCC---CceEEeccccccc
Q 042735 494 RHSILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLE---HKAHVSDFGIAKF 546 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~---~~~kl~DFGla~~ 546 (667)
+..++||||+++|+|.+.+..... ..|.||||+|||++.+ +.+||+|||+++.
T Consensus 212 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~ 291 (419)
T 3i6u_A 212 EDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKI 291 (419)
T ss_dssp SEEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTS
T ss_pred CceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeeccccee
Confidence 568999999999999887754321 2245999999999754 4599999999987
Q ss_pred ccCCCCCcccccccccccCCCC---------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCC
Q 042735 547 LKPDSSNWSALVGTYRYVAPDY---------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617 (667)
Q Consensus 547 ~~~~~~~~~~~~Gt~~y~aPE~---------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (667)
..... .....+||+.|+|||+ +.++|||||||++|||+||+.||........ .... +......
T Consensus 292 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~---~~~~----i~~~~~~ 363 (419)
T 3i6u_A 292 LGETS-LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS---LKDQ----ITSGKYN 363 (419)
T ss_dssp CC------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCC---HHHH----HHTTCCC
T ss_pred cCCCc-cccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHH---HHHH----HhcCCCC
Confidence 65332 2345789999999994 2378999999999999999999864322111 1111 0111111
Q ss_pred CCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
............+.+++.+||+.||++|||++|++++.|+....
T Consensus 364 ~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~~~ 407 (419)
T 3i6u_A 364 FIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDED 407 (419)
T ss_dssp CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGCCHH
T ss_pred CCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhCCcccCChh
Confidence 11111111223567888999999999999999999999987544
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=285.70 Aligned_cols=227 Identities=25% Similarity=0.405 Sum_probs=170.2
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
+++|+..+.||+|+||.||+|... ++..+|||++..... ......+.+.+|++++++++||||+++++++.+.+..++
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 86 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQL-EKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL 86 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH-HHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEecccc-chhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence 578999999999999999999865 467899998753211 111224568899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||+++|+|.+.+.... ...|.||||+||+++.++.+||+|||++...... ..
T Consensus 87 v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~--~~ 164 (279)
T 3fdn_A 87 ILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RR 164 (279)
T ss_dssp EECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSCEEECSCCEESCC-------
T ss_pred EEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCCEEEEeccccccCCcc--cc
Confidence 999999999987764321 1224599999999999999999999998654432 22
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
....||+.|+||| ++.++||||||+++|||++|+.||..... ..... .. .......+...+ .
T Consensus 165 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~-~~-~~~~~~~~~~~~------~ 232 (279)
T 3fdn_A 165 TDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY----QETYK-RI-SRVEFTFPDFVT------E 232 (279)
T ss_dssp ---CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH----HHHHH-HH-HHTCCCCCTTSC------H
T ss_pred cccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcH----HHHHH-HH-HhCCCCCCCcCC------H
Confidence 3467999999999 56799999999999999999999863221 11111 11 111222222222 2
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.+.+++.+||+.+|++|||+.|++++.|+....
T Consensus 233 ~~~~li~~~l~~~p~~Rps~~e~l~h~~~~~~~ 265 (279)
T 3fdn_A 233 GARDLISRLLKHNPSQRPMLREVLEHPWITANS 265 (279)
T ss_dssp HHHHHHHHHCCSSGGGSCCHHHHHHCHHHHHHC
T ss_pred HHHHHHHHHhccChhhCCCHHHHhhCccccCCc
Confidence 456788899999999999999999999997654
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=282.39 Aligned_cols=225 Identities=23% Similarity=0.371 Sum_probs=158.1
Q ss_pred cCCcCcceeecccCeEEEEEEeCC----CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS----KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~----~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
++|+..+.||+|+||.||+|.... +..+|+|+..... .....+.|.+|+.++++++|||||++++++. .+..
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~ 90 (281)
T 1mp8_A 15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT---SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV 90 (281)
T ss_dssp GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT---SHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSC
T ss_pred HHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccC---CHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCcc
Confidence 578888999999999999998743 3469999876432 2334567999999999999999999999984 5678
Q ss_pred EEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
++||||+++|+|.+++.... ...|.||||+||+++.++.+||+|||+++......
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 170 (281)
T 1mp8_A 91 WIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 170 (281)
T ss_dssp EEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC-----------
T ss_pred EEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEECccccccccCccc
Confidence 99999999999998875322 11234999999999999999999999998765432
Q ss_pred C-CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 552 S-NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 552 ~-~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
. ......||+.|+||| |+.++|||||||++|||+| |+.||...... .... .+........+...
T Consensus 171 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~----~~~~-~i~~~~~~~~~~~~--- 242 (281)
T 1mp8_A 171 YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN----DVIG-RIENGERLPMPPNC--- 242 (281)
T ss_dssp --------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG----GHHH-HHHTTCCCCCCTTC---
T ss_pred ccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHH----HHHH-HHHcCCCCCCCCCC---
Confidence 2 123345788999999 5778999999999999997 99998643211 1111 11111111122211
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
...+.+++.+||+.+|++|||+.|++++|.....
T Consensus 243 ---~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 276 (281)
T 1mp8_A 243 ---PPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE 276 (281)
T ss_dssp ---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 1246678889999999999999999999887543
|
| >1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=293.56 Aligned_cols=242 Identities=18% Similarity=0.270 Sum_probs=167.6
Q ss_pred HHHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCch-HHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 418 RAINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQ-IADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 418 ~~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
...++|...+.||+|+||.||+|... +++.||||++........ ....+.+.+|++++++++|||||++++++.+.+.
T Consensus 7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (346)
T 1ua2_A 7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN 86 (346)
T ss_dssp ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC
T ss_pred HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc
Confidence 34578999999999999999999874 588999999864322111 1112468899999999999999999999999999
Q ss_pred eEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
.++||||+++ +|.+.+.... ...|.||||+||+++.++.+||+|||+++.....
T Consensus 87 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~ 165 (346)
T 1ua2_A 87 ISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSP 165 (346)
T ss_dssp CEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSC
T ss_pred eEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCCCEEEEecccceeccCC
Confidence 9999999996 7877665431 1124499999999999999999999999876554
Q ss_pred CCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhh-------------hcc
Q 042735 551 SSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR-------------LDE 610 (667)
Q Consensus 551 ~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~-------------~~~ 610 (667)
....+..+||+.|+||| |+.++|||||||++|||++|++||...........+.... ..+
T Consensus 166 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 245 (346)
T 1ua2_A 166 NRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPD 245 (346)
T ss_dssp CCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTT
T ss_pred cccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhccCcc
Confidence 44455678999999999 4567899999999999999999975322110000000000 000
Q ss_pred ccC-CCCCCCCCc--hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 611 MLD-PRLPPPSPD--VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 611 ~~~-~~~~~~~~~--~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.+. ...+..... .......+.+++.+||+.||++|||++|++++.||...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~~f~~~ 298 (346)
T 1ua2_A 246 YVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNR 298 (346)
T ss_dssp CCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSS
T ss_pred cccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcChhhhcC
Confidence 000 000000000 00112357788899999999999999999999998654
|
| >3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=300.60 Aligned_cols=234 Identities=21% Similarity=0.303 Sum_probs=161.6
Q ss_pred HHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCC--
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHAR-- 494 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~-- 494 (667)
..++|+..+.||+|+||.||+|.. .+++.||||++..... .....+.+.+|+.++.++. |||||++++++...+
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~--~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~ 84 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQ--NSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDR 84 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--C--CHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSS
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEeccccc--ChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCC
Confidence 357899999999999999999976 5688999999865432 2334567889999999998 999999999997654
Q ss_pred ceEEEEEecCCCChHHHhcccc-----------------------CCcccccccCCeeecCCCceEEecccccccccCC-
Q 042735 495 HSILIYEYLKRGSLATNLSNDA-----------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD- 550 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~-----------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~- 550 (667)
..|+|||||+ |+|.+.+.... ...|.||||+|||++.++.+||+|||+|+.....
T Consensus 85 ~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 163 (388)
T 3oz6_A 85 DVYLVFDYME-TDLHAVIRANILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIR 163 (388)
T ss_dssp CEEEEEECCS-EEHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEESSSCC
T ss_pred EEEEEecccC-cCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCcccccccccc
Confidence 6899999998 58877665321 1224599999999999999999999999865321
Q ss_pred --------------------CCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhh
Q 042735 551 --------------------SSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV 603 (667)
Q Consensus 551 --------------------~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~ 603 (667)
....+..+||+.|+||| |+.++||||+||++|||+||+.||........
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~---- 239 (388)
T 3oz6_A 164 RVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQ---- 239 (388)
T ss_dssp CCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH----
T ss_pred cccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHH----
Confidence 11234468999999999 57789999999999999999999863321100
Q ss_pred hhhhhccccCC------------------------------CCCCCCCchH----------HHHHHHHHHHHhccccCCC
Q 042735 604 INMRLDEMLDP------------------------------RLPPPSPDVQ----------GKLISIMEVAFSCLDVSPE 643 (667)
Q Consensus 604 ~~~~~~~~~~~------------------------------~~~~~~~~~~----------~~~~~~~~~~~~Cl~~~p~ 643 (667)
.... ...++. ......+... .....+.+++.+||+.||+
T Consensus 240 ~~~i-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~ 318 (388)
T 3oz6_A 240 LERI-IGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPN 318 (388)
T ss_dssp HHHH-HHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGG
T ss_pred HHHH-HHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcc
Confidence 0000 000000 0000000000 1122567888999999999
Q ss_pred CCCCHHHHHHHHHHhhh
Q 042735 644 SRPTMQTITQQLLFSLV 660 (667)
Q Consensus 644 ~RPt~~ev~~~l~~~~~ 660 (667)
+|||++|+++|.|+...
T Consensus 319 ~R~t~~e~l~Hp~~~~~ 335 (388)
T 3oz6_A 319 KRISANDALKHPFVSIF 335 (388)
T ss_dssp GSCCHHHHTTSTTTTTT
T ss_pred cCCCHHHHhCCHHHHHh
Confidence 99999999999998643
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-34 Score=289.14 Aligned_cols=225 Identities=24% Similarity=0.339 Sum_probs=165.4
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|+. .++..+|+|++...... ...+.+.+|++++++++||||+++++++.+....++|
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 98 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQ---VPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIV 98 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCC---SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccc---hhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEE
Confidence 5688899999999999999986 45788999987643221 2245789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccc-----c-----------------------CCcccccccCCeee---cCCCceEEeccccccccc
Q 042735 500 YEYLKRGSLATNLSND-----A-----------------------AAEELDISSKNVLL---DLEHKAHVSDFGIAKFLK 548 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~-----~-----------------------~~~~~dlk~~NiLl---d~~~~~kl~DFGla~~~~ 548 (667)
|||+++|+|.+.+... . ...|.||||+||++ +.++.+||+|||+++...
T Consensus 99 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~ 178 (285)
T 3is5_A 99 METCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFK 178 (285)
T ss_dssp ECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC--
T ss_pred EEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecC
Confidence 9999999998876421 0 11234999999999 456889999999998755
Q ss_pred CCCCCcccccccccccCCC-----CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 549 PDSSNWSALVGTYRYVAPD-----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 549 ~~~~~~~~~~Gt~~y~aPE-----~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
... ......||+.|+||| ++.++|||||||++|||+||+.||..... ....... ....+.........
T Consensus 179 ~~~-~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~il~~ll~g~~pf~~~~~----~~~~~~~--~~~~~~~~~~~~~~ 251 (285)
T 3is5_A 179 SDE-HSTNAAGTALYMAPEVFKRDVTFKCDIWSAGVVMYFLLTGCLPFTGTSL----EEVQQKA--TYKEPNYAVECRPL 251 (285)
T ss_dssp ---------CTTGGGCCHHHHTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHH--HHCCCCCCC--CCC
T ss_pred Ccc-cCcCcccccCcCChHHhccCCCcccCeehHHHHHHHHHhCCCCCCCCCH----HHHHhhh--ccCCcccccccCcC
Confidence 432 234567999999999 57789999999999999999999863221 1111110 11111111111111
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
...+.+++.+||+.||++|||++|++++.||.
T Consensus 252 ---~~~~~~li~~~L~~dP~~Rps~~e~l~hp~f~ 283 (285)
T 3is5_A 252 ---TPQAVDLLKQMLTKDPERRPSAAQVLHHEWFK 283 (285)
T ss_dssp ---CHHHHHHHHHHTCSCTTTSCCHHHHHTSGGGG
T ss_pred ---CHHHHHHHHHHccCChhhCcCHHHHhcCHHhh
Confidence 12456788899999999999999999998875
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=287.42 Aligned_cols=248 Identities=27% Similarity=0.381 Sum_probs=216.1
Q ss_pred CCCCeeeccccccce--eCCCCCcc-cccCEEEccc-ccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcE
Q 042735 51 SSLRYLFLFENNLSG--SIPPSVGN-LMLTVLALEN-NHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVR 126 (667)
Q Consensus 51 ~~L~~L~L~~n~l~~--~~p~~~~~-~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~ 126 (667)
.+++.|+|++|.+.+ .+|..+.. ..|++|+|++ |.+.+.+|..+..+++|++|++++|++++.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578889999999887 78888777 4699999985 8888888888888999999999999998888888889999999
Q ss_pred EEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCC-CCCEEEccCCcCCCCcCccccCCCCcCeeeccCCc
Q 042735 127 ISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCP-KLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNH 205 (667)
Q Consensus 127 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 205 (667)
|+|++|.+++.+|..+..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.+++.+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999888888888999999999999998888888888887 899999999998888888888887 9999999999
Q ss_pred ccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchh
Q 042735 206 IVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKE 285 (667)
Q Consensus 206 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~ 285 (667)
+.+..|..|..+++|+.|++++|.+.+.+|. +..+++|++|+|++|++++.+|.++..+++|+.|++++|++.+.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 8888888888899999999999988866655 778889999999999998888888888899999999999988888876
Q ss_pred hhcCCCCCEEECcCCC
Q 042735 286 LGKLVQLSELELSHNF 301 (667)
Q Consensus 286 l~~l~~L~~L~l~~n~ 301 (667)
+.+++|+.|++++|+
T Consensus 288 -~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNK 302 (313)
T ss_dssp -TTGGGSCGGGTCSSS
T ss_pred -ccccccChHHhcCCC
Confidence 778888888998887
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-33 Score=288.37 Aligned_cols=227 Identities=24% Similarity=0.384 Sum_probs=172.3
Q ss_pred cCCcCcceeecccCeEEEEEEeC--------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP--------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCS 491 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~--------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~ 491 (667)
++|...+.||+|+||.||+|+.. ++..||||++.... .....+.+.+|+++++++ +||||+++++++.
T Consensus 35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~ 111 (334)
T 2pvf_A 35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA---TEKDLSDLVSEMEMMKMIGKHKNIINLLGACT 111 (334)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC---cHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEc
Confidence 67888999999999999999863 45679999986532 233456799999999999 8999999999999
Q ss_pred eCCceEEEEEecCCCChHHHhccccC----------------------------------------CcccccccCCeeec
Q 042735 492 HARHSILIYEYLKRGSLATNLSNDAA----------------------------------------AEELDISSKNVLLD 531 (667)
Q Consensus 492 ~~~~~~lv~ey~~~g~L~~~l~~~~~----------------------------------------~~~~dlk~~NiLld 531 (667)
+.+..++||||+++|+|.+++..... ..|.||||+||+++
T Consensus 112 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~ 191 (334)
T 2pvf_A 112 QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVT 191 (334)
T ss_dssp SSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC
T ss_pred cCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccceEEEc
Confidence 99999999999999999998864321 01239999999999
Q ss_pred CCCceEEecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChh
Q 042735 532 LEHKAHVSDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPS 602 (667)
Q Consensus 532 ~~~~~kl~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~ 602 (667)
.++.+||+|||+++....... ......||+.|+||| |+.++|||||||++|||+| |+.||..... ..
T Consensus 192 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~----~~ 267 (334)
T 2pvf_A 192 ENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV----EE 267 (334)
T ss_dssp TTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCH----HH
T ss_pred CCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCH----HH
Confidence 999999999999987654322 123346788999999 5779999999999999999 9999753221 11
Q ss_pred hhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 603 VINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
... .+.....+..+... ...+.+++.+||+.+|++|||+.|++++|......
T Consensus 268 ~~~-~~~~~~~~~~~~~~------~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~ 319 (334)
T 2pvf_A 268 LFK-LLKEGHRMDKPANC------TNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTL 319 (334)
T ss_dssp HHH-HHHHTCCCCCCTTC------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHH-HHhcCCCCCCCccC------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 111 11111111222211 12466788899999999999999999998876543
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=290.42 Aligned_cols=238 Identities=23% Similarity=0.346 Sum_probs=172.4
Q ss_pred CcCcceeecccCeEEEEEEeC-----CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC--Cc
Q 042735 423 FDAKYCIGSGRHGSVYRAELP-----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA--RH 495 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~-----~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~--~~ 495 (667)
|...+.||+|+||.||+|.+. +++.||||++.... .....+.|.+|++++++++|||||++++++.+. ..
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 109 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA---GPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAAS 109 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc---ChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCce
Confidence 478889999999999998753 57789999987542 233456799999999999999999999999884 57
Q ss_pred eEEEEEecCCCChHHHhccccCC-----------------------cccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 496 SILIYEYLKRGSLATNLSNDAAA-----------------------EELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~~~-----------------------~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
.++||||+++|+|.+++...... .|.||||+||+++.++.+||+|||+++.......
T Consensus 110 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~ 189 (318)
T 3lxp_A 110 LQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHE 189 (318)
T ss_dssp EEEEECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCS
T ss_pred EEEEEecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEECCcccccccccccc
Confidence 89999999999999988654321 2349999999999999999999999987654332
Q ss_pred C---cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccC------CCChhhhhhhhccccCCCCC
Q 042735 553 N---WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSI------LPSPSVINMRLDEMLDPRLP 617 (667)
Q Consensus 553 ~---~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 617 (667)
. .....||+.|+||| ++.++|||||||++|||+||+.||...... ..............+.....
T Consensus 190 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (318)
T 3lxp_A 190 YYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGER 269 (318)
T ss_dssp EEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred ccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcccC
Confidence 1 23456888999999 467899999999999999999997522100 00000000011111111111
Q ss_pred CCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhccC
Q 042735 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYA 665 (667)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~~~ 665 (667)
.+.+. .....+.+++.+||+.||++|||++|+++.|......+...
T Consensus 270 ~~~~~--~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~~ 315 (318)
T 3lxp_A 270 LPRPD--KCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQGQ 315 (318)
T ss_dssp CCCCT--TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCc--cccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhccC
Confidence 11110 11235678888999999999999999999998876665533
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-32 Score=306.57 Aligned_cols=310 Identities=21% Similarity=0.230 Sum_probs=249.5
Q ss_pred CCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcc
Q 042735 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALE 82 (667)
Q Consensus 4 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~ 82 (667)
+++.|+|++|+|+++.|.+|.++++|++|+|++|+|+++.|.+|.+|++|++|+|++|+|++..+..|.. .+|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 7899999999999988889999999999999999999888889999999999999999998766677776 569999999
Q ss_pred cccccccCCccccCCCCccEEEeeCccccc-ccCccCCCCCCCcEEEccCCccccccchhhhcC----------------
Q 042735 83 NNHFTGNLRHNICRNGALERVIVGGNHFRG-PIPKCLRNCPNLVRISLEGNNMRGTISEAFGIY---------------- 145 (667)
Q Consensus 83 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l---------------- 145 (667)
+|.+++..+..+.++++|+.|++++|.+++ ..|..+..+++|++|+|++|++++..+..+..+
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 999998777789999999999999999976 467888999999999999998765544332211
Q ss_pred --------------------------------------------------------------------------------
Q 042735 146 -------------------------------------------------------------------------------- 145 (667)
Q Consensus 146 -------------------------------------------------------------------------------- 145 (667)
T Consensus 213 l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 213 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence
Q ss_pred -----------------------------------CCCCEEECcCCccCCccCc-------------------cCCCCCC
Q 042735 146 -----------------------------------LNLTFLDISDNNFFGEIAS-------------------NWGKCPK 171 (667)
Q Consensus 146 -----------------------------------~~L~~L~L~~n~l~~~~~~-------------------~~~~l~~ 171 (667)
..|+.|++.+|.+.+..+. .+..+++
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~ 372 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 372 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTT
T ss_pred ccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccc
Confidence 1233333333332211110 1123455
Q ss_pred CCEEEccCCcCC-------------------------------------------------CC-cCccccCCCCcCeeec
Q 042735 172 LSTLNVSMNNIT-------------------------------------------------RS-IPLEIGNLSTLNEFDL 201 (667)
Q Consensus 172 L~~L~L~~n~l~-------------------------------------------------~~-~p~~~~~l~~L~~L~L 201 (667)
|+.|++++|.+. .. .+..+.++++++.+++
T Consensus 373 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp CCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred cccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence 666666665542 11 1123566788899999
Q ss_pred cCCcccccCCccccCCcccceeeccccccc-ccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCcc
Q 042735 202 SLNHIVGKIPKEFGKLNSLTKLILRGNQLI-GHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQ 280 (667)
Q Consensus 202 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~ 280 (667)
+.|.+.+..+..+..+++|+.|++++|.+. +.+|..|..+++|++|+|++|++++..|..|.++++|+.|+|++|++.+
T Consensus 453 s~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~ 532 (635)
T 4g8a_A 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532 (635)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB
T ss_pred cccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC
Confidence 999999888989999999999999999754 4577889999999999999999999999999999999999999999988
Q ss_pred ccchhhhcCCCCCEEECcCCCCCCcCcccccCC
Q 042735 281 ELPKELGKLVQLSELELSHNFLGREIPSQICSM 313 (667)
Q Consensus 281 ~~p~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~ 313 (667)
..|..|..+++|++|++++|.+.+..|..+..+
T Consensus 533 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 533 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 888899999999999999999998888777654
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=290.80 Aligned_cols=239 Identities=19% Similarity=0.300 Sum_probs=165.2
Q ss_pred cCCcC-cceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceE
Q 042735 421 NDFDA-KYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 421 ~~f~~-~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~ 497 (667)
+.|.. .+.||+|+||.||+|.. .+++.||||++..... ...+.+.+|++++.++ +|||||++++++.+.+..+
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~ 87 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPG----HIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFY 87 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSS----CCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcc----hhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEE
Confidence 45666 36799999999999985 5688999999865321 2245688999999985 7999999999999999999
Q ss_pred EEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCc---eEEecccccccccCC
Q 042735 498 LIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHK---AHVSDFGIAKFLKPD 550 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~---~kl~DFGla~~~~~~ 550 (667)
+||||+++|+|.+.+.... ...|.||||+||+++.++. +||+|||+++.....
T Consensus 88 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~ 167 (316)
T 2ac3_A 88 LVFEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLN 167 (316)
T ss_dssp EEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-----
T ss_pred EEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCccccccC
Confidence 9999999999988775421 1224599999999998776 999999999865422
Q ss_pred C-------CCcccccccccccCCC-----------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC---C----Chhhhh
Q 042735 551 S-------SNWSALVGTYRYVAPD-----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL---P----SPSVIN 605 (667)
Q Consensus 551 ~-------~~~~~~~Gt~~y~aPE-----------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~---~----~~~~~~ 605 (667)
. ......+||+.|+||| |+.++|||||||++|||+||+.||....... . ......
T Consensus 168 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 247 (316)
T 2ac3_A 168 GDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQN 247 (316)
T ss_dssp --------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHH
T ss_pred CccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHH
Confidence 1 1123456999999999 4679999999999999999999986432110 0 000000
Q ss_pred hhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 606 MRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
.....+.......+..........+.+++.+||+.||++|||++|++++.|+.....+
T Consensus 248 ~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~~~~~ 305 (316)
T 2ac3_A 248 MLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWVQGCAPE 305 (316)
T ss_dssp HHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSTTCC-----
T ss_pred HHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcChhhcCCCCc
Confidence 0011111111111111001112356788899999999999999999999998765443
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=289.74 Aligned_cols=288 Identities=18% Similarity=0.175 Sum_probs=218.8
Q ss_pred CCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEE
Q 042735 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLA 80 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~ 80 (667)
+.+|+.|++++|.++.+.+..|.++++|++|+|++|++.+..+..|..+++|++|+|++|.+++..|..++. .+|+.|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 578999999999998877777888999999999999999887889999999999999999998877777776 5699999
Q ss_pred cccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCC
Q 042735 81 LENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFG 160 (667)
Q Consensus 81 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 160 (667)
|++|.++...+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++. .+..+++|+.|++++|.+.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 999999865555568899999999999999988888899999999999999999865 35667888888888887754
Q ss_pred ccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccC
Q 042735 161 EIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240 (667)
Q Consensus 161 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 240 (667)
. ...++|+.|++++|.+... |. ...++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..|..+..
T Consensus 201 ~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 201 L-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp E-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred c-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 2 2334677777777776543 22 2235677777777766543 45666777777777777776666666777
Q ss_pred CCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCC
Q 042735 241 LTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGR 304 (667)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~ 304 (667)
+++|+.|+|++|++++ +|..+..+++|+.|++++|++. .+|..+..+++|+.|++++|.+..
T Consensus 271 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce
Confidence 7777777777777765 3445556667777777777644 456666667777777777776644
|
| >3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=305.25 Aligned_cols=240 Identities=20% Similarity=0.278 Sum_probs=156.9
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC-----C
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA-----R 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~-----~ 494 (667)
++|+..+.||+|+||.||+|.. .+++.||||++..... .....+.+.+|++++++++|||||++++++... .
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 130 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFE--DLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFD 130 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECSTTS--SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhc--CHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCc
Confidence 5788999999999999999976 4688999999865432 234456799999999999999999999999543 5
Q ss_pred ceEEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 495 HSILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
..|+||||+. |+|.+.+.... ...|.||||+|||++.++.+||+|||+|+.....
T Consensus 131 ~~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~ 209 (458)
T 3rp9_A 131 ELYVVLEIAD-SDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYP 209 (458)
T ss_dssp CEEEEECCCS-EEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCTTSC
T ss_pred eEEEEEeccc-cchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeecccccchhccCc
Confidence 6899999985 68877765432 1234599999999999999999999999876422
Q ss_pred C---------------------------CCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhC---------
Q 042735 551 S---------------------------SNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKG--------- 587 (667)
Q Consensus 551 ~---------------------------~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG--------- 587 (667)
. ...+..+||+.|+||| |+.++|||||||++|||+||
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~~~~~~ 289 (458)
T 3rp9_A 210 ENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHA 289 (458)
T ss_dssp TTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTCSSGG
T ss_pred cccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhccccccccc
Confidence 1 1234567899999999 56789999999999999994
Q ss_pred --CCCCCCCccCCCCh----------------hhhhh----------------------hhccccCCCCCCCC-CchHHH
Q 042735 588 --KHPRGFVSSILPSP----------------SVINM----------------------RLDEMLDPRLPPPS-PDVQGK 626 (667)
Q Consensus 588 --~~p~~~~~~~~~~~----------------~~~~~----------------------~~~~~~~~~~~~~~-~~~~~~ 626 (667)
+++|.......... ..... .....+........ ......
T Consensus 290 ~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (458)
T 3rp9_A 290 DRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAERFPAS 369 (458)
T ss_dssp GCCCSCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGGGSTTS
T ss_pred cccccCCCCccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHHHCCCC
Confidence 44442211000000 00000 00000000000000 000011
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
...+.+++.+||+.||++|||++|+++|.||..+.+.
T Consensus 370 s~~~~dLl~~mL~~dP~~R~t~~e~L~Hp~f~~~~~~ 406 (458)
T 3rp9_A 370 SADAIHLLKRMLVFNPNKRITINECLAHPFFKEVRIA 406 (458)
T ss_dssp CHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTCCG
T ss_pred CHHHHHHHHHHhccCccccCCHHHHhcCHhhhhcCCC
Confidence 2356788899999999999999999999999876543
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=285.45 Aligned_cols=230 Identities=20% Similarity=0.319 Sum_probs=177.2
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|... +++.+|+|.+...... .....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLL-KPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCC-SHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhcc-CHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 57888899999999999999875 4778999987543222 223456789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
|||+++++|.+.+.... ...|.||||+||+++.++.+||+|||+++..........
T Consensus 94 ~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~ 173 (294)
T 2rku_A 94 LELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKK 173 (294)
T ss_dssp EECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBC
T ss_pred EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCCCEEEEeccCceecccCccccc
Confidence 99999999988765321 112349999999999999999999999987654444445
Q ss_pred cccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 556 ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
...||+.|+||| ++.++||||||+++|||+||+.||..... ..... .... .....+...+ ..
T Consensus 174 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~----~~~~~-~~~~-~~~~~~~~~~------~~ 241 (294)
T 2rku_A 174 VLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL----KETYL-RIKK-NEYSIPKHIN------PV 241 (294)
T ss_dssp CCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH----HHHHH-HHHT-TCCCCCTTSC------HH
T ss_pred cccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHH-HHhh-ccCCCccccC------HH
Confidence 568999999999 56789999999999999999999863221 00000 0000 0111222111 24
Q ss_pred HHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 630 IMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
+.+++.+||+.||++|||++|++++.|+......
T Consensus 242 ~~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~~~ 275 (294)
T 2rku_A 242 AASLIQKMLQTDPTARPTINELLNDEFFTSGYIP 275 (294)
T ss_dssp HHHHHHHHTCSSGGGSCCGGGGGGSHHHHTSCCC
T ss_pred HHHHHHHHcccChhhCcCHHHHhhChheecCCcC
Confidence 6678889999999999999999999999766543
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=293.64 Aligned_cols=241 Identities=22% Similarity=0.341 Sum_probs=170.8
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|+.. +++.||||++..... .....+.+.+|++++++++|||||++++++.+.+..++
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 101 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDD--DKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYL 101 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSS--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCC--chHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEE
Confidence 467888999999999999999875 488899998865432 23345678899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||+++++|.+.+.... ...|.||||+||+++.++.+||+|||+++.........
T Consensus 102 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~ 181 (331)
T 4aaa_A 102 VFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVY 181 (331)
T ss_dssp EEECCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTTC----------
T ss_pred EEecCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCcccc
Confidence 999999998877653221 12245999999999999999999999998765444444
Q ss_pred ccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhh----------------hhhhccc
Q 042735 555 SALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVI----------------NMRLDEM 611 (667)
Q Consensus 555 ~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~----------------~~~~~~~ 611 (667)
....||+.|+||| ++.++|||||||++|||+||+.||............. .......
T Consensus 182 ~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (331)
T 4aaa_A 182 DDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGV 261 (331)
T ss_dssp --CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTC
T ss_pred CCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccc
Confidence 5567999999999 4668999999999999999999986432110000000 0000000
Q ss_pred cCCCCCCCCCch---HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 612 LDPRLPPPSPDV---QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 612 ~~~~~~~~~~~~---~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
..+......+.. ......+.+++.+||+.||++|||++|++++.||....+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~ 315 (331)
T 4aaa_A 262 RLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFFQMDGF 315 (331)
T ss_dssp CCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHGGGH
T ss_pred cCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcCchhccCCh
Confidence 011111111000 011235778889999999999999999999999976543
|
| >3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=308.94 Aligned_cols=232 Identities=22% Similarity=0.299 Sum_probs=172.1
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCch---------HHhHHHHHHHHHHHHhcCCCCeeEEEEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQ---------IADQKEFFAEIEALTKIRHRNIVKFYGF 489 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~---------~~~~~~~~~E~~~l~~l~H~niv~~~g~ 489 (667)
.++|...+.||+|+||.||+|... ++..+|||++........ ....+.+.+|++++++++|||||+++++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 114 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV 114 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 367889999999999999999875 578899999865322110 1234578999999999999999999999
Q ss_pred EEeCCceEEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCC---ceEEeccc
Q 042735 490 CSHARHSILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEH---KAHVSDFG 542 (667)
Q Consensus 490 ~~~~~~~~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~---~~kl~DFG 542 (667)
+.+....++||||+++|+|.+.+.... ...|.||||+|||++.++ .+||+|||
T Consensus 115 ~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg 194 (504)
T 3q5i_A 115 FEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFG 194 (504)
T ss_dssp EECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSSEEECCCT
T ss_pred EEcCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCccEEEEECC
Confidence 999999999999999999987764321 112459999999998776 69999999
Q ss_pred ccccccCCCCCcccccccccccCCC-----CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCC
Q 042735 543 IAKFLKPDSSNWSALVGTYRYVAPD-----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617 (667)
Q Consensus 543 la~~~~~~~~~~~~~~Gt~~y~aPE-----~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (667)
+++...... .....+||+.|+||| |+.++||||+||++|||++|+.||..... ..... .+......
T Consensus 195 ~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~----~~~~~----~i~~~~~~ 265 (504)
T 3q5i_A 195 LSSFFSKDY-KLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPFGGQND----QDIIK----KVEKGKYY 265 (504)
T ss_dssp TCEECCTTS-CBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHH----HHHHCCCC
T ss_pred CCEEcCCCC-ccccccCCcCCCCHHHhccCCCchHHHHHHHHHHHHHHhCCCCCCCCCH----HHHHH----HHHcCCCC
Confidence 998765432 234568999999999 68899999999999999999999864321 11111 11111111
Q ss_pred CCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.+.+........+.+++.+||+.||.+|||++|++++.|+...
T Consensus 266 ~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~ 308 (504)
T 3q5i_A 266 FDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNSRWIKKY 308 (504)
T ss_dssp CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHT
T ss_pred CCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcCHhhhhc
Confidence 1111111122356788889999999999999999999998754
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-34 Score=295.04 Aligned_cols=221 Identities=20% Similarity=0.321 Sum_probs=171.4
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCch----HHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQ----IADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~----~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
.++|...+.||+|+||.||+|.. .++..||||++........ ....+.+.+|++++++++|||||++++++.+.+
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~ 102 (335)
T 3dls_A 23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG 102 (335)
T ss_dssp HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence 46789999999999999999985 5678899998865432111 012235778999999999999999999999999
Q ss_pred ceEEEEEecCCC-ChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccC
Q 042735 495 HSILIYEYLKRG-SLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 495 ~~~lv~ey~~~g-~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~ 549 (667)
..++||||+.+| +|.+++..... ..|.||||+|||++.++.+||+|||+++....
T Consensus 103 ~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~ 182 (335)
T 3dls_A 103 FFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLER 182 (335)
T ss_dssp EEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCCcEEEeecccceECCC
Confidence 999999999877 89887764321 12349999999999999999999999987654
Q ss_pred CCCCcccccccccccCCC------C-CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCc
Q 042735 550 DSSNWSALVGTYRYVAPD------Y-RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE------~-~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (667)
... ....+||+.|+||| + +.++|||||||++|||+||+.||..... ........+..
T Consensus 183 ~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--------------~~~~~~~~~~~- 246 (335)
T 3dls_A 183 GKL-FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE--------------TVEAAIHPPYL- 246 (335)
T ss_dssp TCC-BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG--------------GTTTCCCCSSC-
T ss_pred CCc-eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH--------------HHhhccCCCcc-
Confidence 332 34567999999999 2 5678999999999999999999853221 11111111111
Q ss_pred hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 623 VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 623 ~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
. ...+.+++.+||+.||++|||++|++++.|+..
T Consensus 247 ~---~~~l~~li~~~L~~dP~~Rps~~ell~hp~~~~ 280 (335)
T 3dls_A 247 V---SKELMSLVSGLLQPVPERRTTLEKLVTDPWVTQ 280 (335)
T ss_dssp C---CHHHHHHHHHHTCSSGGGSCCHHHHHHCTTTTC
T ss_pred c---CHHHHHHHHHHccCChhhCcCHHHHhcCccccC
Confidence 1 124667888999999999999999999999854
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=308.47 Aligned_cols=230 Identities=20% Similarity=0.326 Sum_probs=173.1
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|... ++..||||++...... ......+.+|++++++++|||||++++++.+....++|
T Consensus 22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAK--NKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHB--CSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEeccccc--chHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 57889999999999999999874 6888999987532111 12345789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeec---CCCceEEecccccccccCCCC
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLD---LEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld---~~~~~kl~DFGla~~~~~~~~ 552 (667)
|||+++|+|.+.+.... ...|.||||+|||++ .++.+||+|||+++......
T Consensus 100 ~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~- 178 (486)
T 3mwu_A 100 GELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT- 178 (486)
T ss_dssp ECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC--
T ss_pred EEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCC-
Confidence 99999999987664321 123459999999995 56679999999998765432
Q ss_pred CcccccccccccCCC-----CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 553 NWSALVGTYRYVAPD-----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE-----~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
.....+||+.|+||| |+.++||||+||++|||+||+.||..... ..... .+.........+......
T Consensus 179 ~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~----~~~~~----~i~~~~~~~~~~~~~~~s 250 (486)
T 3mwu_A 179 KMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNE----YDILK----RVETGKYAFDLPQWRTIS 250 (486)
T ss_dssp ---CCTTGGGGCCGGGGGSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHH----HHHHTCCCSCSGGGGGSC
T ss_pred ccCCCcCCCCCCCHHHhCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHH----HHHhCCCCCCCcccCCCC
Confidence 234568999999999 67789999999999999999999853221 11111 111111111122222223
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
..+.+++.+||+.+|++|||+.|++++.|+....
T Consensus 251 ~~~~~li~~~L~~dp~~R~t~~~~l~hp~~~~~~ 284 (486)
T 3mwu_A 251 DDAKDLIRKMLTFHPSLRITATQCLEHPWIQKYS 284 (486)
T ss_dssp HHHHHHHHHHTCSSTTTSCCHHHHHHCHHHHHTC
T ss_pred HHHHHHHHHHcCCChhhCcCHHHHhcCHhhccCc
Confidence 3567888999999999999999999999997643
|
| >3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=284.68 Aligned_cols=232 Identities=19% Similarity=0.261 Sum_probs=170.9
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCch--HHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQ--IADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
++|+..+.||+|+||.||+|... +++.+|||.+........ ....+.+.+|++++++++||||+++++++.+....+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 46888999999999999999875 588999998764322111 113567999999999999999999999999999999
Q ss_pred EEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCC----ceEEecccccccccC
Q 042735 498 LIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEH----KAHVSDFGIAKFLKP 549 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~----~~kl~DFGla~~~~~ 549 (667)
+||||+++++|.+++..... ..|.||||+||+++.++ .+||+|||+++....
T Consensus 85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~ 164 (283)
T 3bhy_A 85 LILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA 164 (283)
T ss_dssp EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC-
T ss_pred EEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEecccceeccC
Confidence 99999999999988753211 12349999999999877 899999999987644
Q ss_pred CCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 550 DSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
.. ......||+.|+||| ++.++||||||+++|||+||+.||..... .... ..+.......+....
T Consensus 165 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~---~~~~~~~~~~~~~~~ 235 (283)
T 3bhy_A 165 GN-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETK-----QETL---TNISAVNYDFDEEYF 235 (283)
T ss_dssp --------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHH---HHHHTTCCCCCHHHH
T ss_pred CC-cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcch-----HHHH---HHhHhcccCCcchhc
Confidence 32 233457999999999 56789999999999999999999853221 0000 011111111100000
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
......+.+++.+||+.||++|||++|++++.|+....
T Consensus 236 ~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~ 273 (283)
T 3bhy_A 236 SNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIR 273 (283)
T ss_dssp TTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHH
T ss_pred ccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHH
Confidence 11123467888899999999999999999999987543
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=289.87 Aligned_cols=233 Identities=25% Similarity=0.365 Sum_probs=172.0
Q ss_pred HcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHh--cCCCCeeEEEEEEEeCC---
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK--IRHRNIVKFYGFCSHAR--- 494 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~--l~H~niv~~~g~~~~~~--- 494 (667)
.++|...+.||+|+||.||+|+. +++.||||++.. ...+.+.+|++++.. ++||||+++++++....
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~-------~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~ 112 (342)
T 1b6c_B 41 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSS-------REERSWFREAEIYQTVMLRHENILGFIAADNKDNGTW 112 (342)
T ss_dssp HHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECG-------GGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSC
T ss_pred cccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCc-------hhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCcc
Confidence 46799999999999999999988 488899999753 123568889999887 78999999999998876
Q ss_pred -ceEEEEEecCCCChHHHhccc-------------------------------cCCcccccccCCeeecCCCceEEeccc
Q 042735 495 -HSILIYEYLKRGSLATNLSND-------------------------------AAAEELDISSKNVLLDLEHKAHVSDFG 542 (667)
Q Consensus 495 -~~~lv~ey~~~g~L~~~l~~~-------------------------------~~~~~~dlk~~NiLld~~~~~kl~DFG 542 (667)
..++||||+++|+|.+++... ....|.||||+||+++.++.+||+|||
T Consensus 113 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg 192 (342)
T 1b6c_B 113 TQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG 192 (342)
T ss_dssp CCEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCT
T ss_pred ceeEEEEeecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECC
Confidence 789999999999998876431 122355999999999999999999999
Q ss_pred ccccccCCCC----CcccccccccccCCCCC------------CCchHHHHHHHHHHHHhC----------CCCCCCCcc
Q 042735 543 IAKFLKPDSS----NWSALVGTYRYVAPDYR------------KKCDVYSFRVLALEVIKG----------KHPRGFVSS 596 (667)
Q Consensus 543 la~~~~~~~~----~~~~~~Gt~~y~aPE~~------------~~~DV~sfGvvl~ElltG----------~~p~~~~~~ 596 (667)
+++....... ......||+.|+|||.. .++|||||||++|||+|| +.||.....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~ 272 (342)
T 1b6c_B 193 LAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVP 272 (342)
T ss_dssp TCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSC
T ss_pred CceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCc
Confidence 9987654332 12345799999999931 469999999999999999 566543221
Q ss_pred CCCChhhh-hhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 597 ILPSPSVI-NMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 597 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
........ .........+.++... ........+.+++.+||+.+|++|||++||+++|......
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~ 337 (342)
T 1b6c_B 273 SDPSVEEMRKVVCEQKLRPNIPNRW-QSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 337 (342)
T ss_dssp SSCCHHHHHHHHTTSCCCCCCCGGG-GTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHhCCCCcccc-cchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence 11111111 1111111222222111 1123445678899999999999999999999999876543
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-33 Score=288.32 Aligned_cols=224 Identities=22% Similarity=0.377 Sum_probs=163.1
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCce----EEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEF----LAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~----~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
++|...+.||+|+||.||+|... ++.. +|+|.+...... ...+.+.+|+.++++++|||||++++++. .+.
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~ 88 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGR---QSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSS 88 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSC---SCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSS
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccH---HHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCc
Confidence 46888899999999999999864 4444 777876543221 11235778999999999999999999986 567
Q ss_pred eEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
.++||||+++|+|.+.+.... ...|.||||+|||++.++.+||+|||+++.....
T Consensus 89 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~ 168 (325)
T 3kex_A 89 LQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPD 168 (325)
T ss_dssp EEEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCC
T ss_pred cEEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCcccccCcc
Confidence 889999999999998875431 1123499999999999999999999999976543
Q ss_pred CC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 551 SS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 551 ~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
.. ..+...||+.|+||| |+.++|||||||++|||+| |+.||...... .... ..........+...+
T Consensus 169 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~----~~~~-~~~~~~~~~~~~~~~ 243 (325)
T 3kex_A 169 DKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLA----EVPD-LLEKGERLAQPQICT 243 (325)
T ss_dssp TTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTT----HHHH-HHHTTCBCCCCTTBC
T ss_pred cccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHH----HHHH-HHHcCCCCCCCCcCc
Confidence 32 234456888999999 6779999999999999999 99998643211 1111 111111111111111
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
. .+.+++.+||+.+|++|||++|+++++....
T Consensus 244 ~------~~~~li~~~l~~dp~~Rps~~el~~~l~~~~ 275 (325)
T 3kex_A 244 I------DVYMVMVKCWMIDENIRPTFKELANEFTRMA 275 (325)
T ss_dssp T------TTTHHHHHHTCSCTTTSCCHHHHHHHHHHHT
T ss_pred H------HHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 1 3556788999999999999999999987653
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=294.26 Aligned_cols=235 Identities=21% Similarity=0.323 Sum_probs=172.7
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|... ++..+|+|++.... .....+.+.+|++++++++|||||++++++.+.+..++|
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 109 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI---KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC 109 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC---CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc---CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEE
Confidence 57888999999999999999875 67889999886542 233456799999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||+++|+|.+++.... ...|.||||+||+++.++.+||+|||+++..... ..
T Consensus 110 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~ 187 (360)
T 3eqc_A 110 MEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS--MA 187 (360)
T ss_dssp ECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH--C-
T ss_pred EECCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc--cc
Confidence 99999999988765321 2335599999999999999999999999765322 12
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC--------------Ch---h---------
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP--------------SP---S--------- 602 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~--------------~~---~--------- 602 (667)
....||+.|+||| |+.++|||||||++|||+||+.||........ .+ .
T Consensus 188 ~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (360)
T 3eqc_A 188 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKF 267 (360)
T ss_dssp ---CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC------------------------
T ss_pred cCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCccccc
Confidence 3467999999999 56789999999999999999999853211000 00 0
Q ss_pred --------hhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 603 --------VINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 603 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
..............+..... .....+.+++.+||+.||++|||++|++++.|+.....
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~ 333 (360)
T 3eqc_A 268 GMDSRPPMAIFELLDYIVNEPPPKLPSG--VFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDA 333 (360)
T ss_dssp ------CCCHHHHHHHHHHSCCCCCCTT--TSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHHHHH
T ss_pred ccCCCCcccchhhhhHHhccCCCCCCcc--cccHHHHHHHHHHhhcChhhCCCHHHHhhChHhhcchH
Confidence 00000000000000000000 01224678888999999999999999999999986543
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=290.88 Aligned_cols=230 Identities=20% Similarity=0.319 Sum_probs=177.8
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|... +++.+|+|++...... .....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLL-KPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCC-SHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhc-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 57888999999999999999875 4678999987643221 223456789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
|||+++++|.+.+.... ...|.||||+||+++.++.+||+|||+++..........
T Consensus 120 ~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~ 199 (335)
T 2owb_A 120 LELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKK 199 (335)
T ss_dssp ECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBC
T ss_pred EecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCCEEEeeccCceecccCccccc
Confidence 99999999988765321 112449999999999999999999999987654444445
Q ss_pred cccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 556 ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 556 ~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
...||+.|+||| ++.++|||||||++|||+||+.||..... ..... .... ....++...+ ..
T Consensus 200 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~----~~~~~-~~~~-~~~~~~~~~~------~~ 267 (335)
T 2owb_A 200 VLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL----KETYL-RIKK-NEYSIPKHIN------PV 267 (335)
T ss_dssp CCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH----HHHHH-HHHH-TCCCCCTTSC------HH
T ss_pred ccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCH----HHHHH-HHhc-CCCCCCccCC------HH
Confidence 578999999999 57789999999999999999999863221 00100 0000 1112222211 24
Q ss_pred HHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 630 IMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
+.+++.+||+.||++|||++|++++.|+...+..
T Consensus 268 ~~~li~~~l~~dp~~Rps~~ell~~~~~~~~~~~ 301 (335)
T 2owb_A 268 AASLIQKMLQTDPTARPTINELLNDEFFTSGYIP 301 (335)
T ss_dssp HHHHHHHHTCSSGGGSCCGGGGGGSHHHHTSCCC
T ss_pred HHHHHHHHccCChhHCcCHHHHhcCccccCCCcc
Confidence 5678889999999999999999999999866543
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=294.93 Aligned_cols=228 Identities=24% Similarity=0.398 Sum_probs=158.6
Q ss_pred CCcCcceeecccCeEEEEEEeC--CC--ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe-CCce
Q 042735 422 DFDAKYCIGSGRHGSVYRAELP--SK--EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH-ARHS 496 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~--~~--~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~-~~~~ 496 (667)
.|...+.||+|+||.||+|... ++ ..+|||.+.... .....+.|.+|+.++++++|||||++++++.+ .+..
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ 166 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT---DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSP 166 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCS---CSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCC
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCC---CHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCe
Confidence 4566788999999999999763 22 358999876432 22345679999999999999999999999765 4578
Q ss_pred EEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
++||||+++|+|.+++..... ..|.||||+|||++.++.+||+|||+++......
T Consensus 167 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~ 246 (373)
T 3c1x_A 167 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE 246 (373)
T ss_dssp EEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC----------
T ss_pred EEEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeeccccccccccc
Confidence 999999999999998864321 1234999999999999999999999998654322
Q ss_pred C----CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCC
Q 042735 552 S----NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620 (667)
Q Consensus 552 ~----~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (667)
. ..+...||+.|+||| |+.++|||||||++|||+| |.+||...... ..... .........+...
T Consensus 247 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~----~~~~~-~~~~~~~~~p~~~ 321 (373)
T 3c1x_A 247 FDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF----DITVY-LLQGRRLLQPEYC 321 (373)
T ss_dssp -----------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSS----CHHHH-HHTTCCCCCCTTC
T ss_pred cccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHH----HHHHH-HHcCCCCCCCCCC
Confidence 1 123346788999999 6789999999999999999 66676533211 11111 1111111111111
Q ss_pred CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 621 ~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
+ ..+.+++.+||+.+|++|||++|++++|......+.
T Consensus 322 ~------~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~ 358 (373)
T 3c1x_A 322 P------DPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFI 358 (373)
T ss_dssp C------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCC
T ss_pred C------HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcc
Confidence 1 246678889999999999999999999988765543
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=279.95 Aligned_cols=223 Identities=26% Similarity=0.437 Sum_probs=171.3
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|...+.||+|+||.||+|...++..+|+|++..... ..+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 82 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-----SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVT 82 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-----CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-----CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEE
Confidence 57888899999999999999998888999999875322 2356899999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCC-CCc
Q 042735 501 EYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS-SNW 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~-~~~ 554 (667)
||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++...... ...
T Consensus 83 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~ 162 (267)
T 3t9t_A 83 EFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSS 162 (267)
T ss_dssp CCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHST
T ss_pred eCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEccccccccccccccccc
Confidence 99999999988754311 1234999999999999999999999998654321 112
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
....||+.|+||| ++.++||||||+++|||+| |+.||..... ..... .+........+... .
T Consensus 163 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~----~~~~~-~i~~~~~~~~~~~~------~ 231 (267)
T 3t9t_A 163 TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN----SEVVE-DISTGFRLYKPRLA------S 231 (267)
T ss_dssp TSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH----HHHHH-HHHTTCCCCCCTTS------C
T ss_pred ccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCH----HHHHH-HHhcCCcCCCCccC------c
Confidence 2346788999999 5778999999999999999 8999763221 11111 11111111111111 1
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..+.+++.+||+.+|++|||++|++++|....
T Consensus 232 ~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~ 263 (267)
T 3t9t_A 232 THVYQIMNHCWRERPEDRPAFSRLLRQLAEIA 263 (267)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 24667888999999999999999999987653
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-33 Score=282.81 Aligned_cols=224 Identities=21% Similarity=0.354 Sum_probs=167.5
Q ss_pred CcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe----CCceE
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH----ARHSI 497 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~----~~~~~ 497 (667)
|...+.||+|+||.||+|.. .++..||+|++...... ....+.+.+|++++++++|||||++++++.. ....+
T Consensus 28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 105 (290)
T 1t4h_A 28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT--KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhC--HHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence 56677899999999999986 45778999987643322 2345679999999999999999999999875 35689
Q ss_pred EEEEecCCCChHHHhccc------------------------cC--CcccccccCCeeec-CCCceEEecccccccccCC
Q 042735 498 LIYEYLKRGSLATNLSND------------------------AA--AEELDISSKNVLLD-LEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~------------------------~~--~~~~dlk~~NiLld-~~~~~kl~DFGla~~~~~~ 550 (667)
+||||+++|+|.+++... .. ..|.||||+||+++ .++.+||+|||+++.....
T Consensus 106 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~ 185 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS 185 (290)
T ss_dssp EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTT
T ss_pred EEEEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCccccccc
Confidence 999999999998876431 12 34669999999998 8899999999999764432
Q ss_pred CCCcccccccccccCCC-----CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 551 SSNWSALVGTYRYVAPD-----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 551 ~~~~~~~~Gt~~y~aPE-----~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
......||+.|+||| ++.++|||||||++|||+||+.||..... ..... ........+...+ ..
T Consensus 186 --~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~----~~~~~---~~~~~~~~~~~~~--~~ 254 (290)
T 1t4h_A 186 --FAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQN----AAQIY---RRVTSGVKPASFD--KV 254 (290)
T ss_dssp --SBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSS----HHHHH---HHHTTTCCCGGGG--GC
T ss_pred --ccccccCCcCcCCHHHHhccCCCcchHHHHHHHHHHHHhCCCCCCCcCc----HHHHH---HHHhccCCccccC--CC
Confidence 234567999999999 57899999999999999999999853221 11110 1111111111000 01
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
....+.+++.+||+.+|++|||++|++++.||..
T Consensus 255 ~~~~l~~li~~~l~~dp~~Rps~~ell~h~~f~~ 288 (290)
T 1t4h_A 255 AIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQE 288 (290)
T ss_dssp CCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC-
T ss_pred CCHHHHHHHHHHccCChhhCCCHHHHhhCccccc
Confidence 1124678888999999999999999999998854
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=288.02 Aligned_cols=225 Identities=22% Similarity=0.413 Sum_probs=154.1
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCc----eEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKE----FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~----~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
++|+..+.||+|+||.||+|...... .||||++...... ....+.|.+|++++++++|||||++++++......
T Consensus 23 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 100 (323)
T 3qup_A 23 QQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIA--SSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK 100 (323)
T ss_dssp --CEEEEEEEEETTEEEEEEEC-------CEEEEEEC--------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred hHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccC--HHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence 57888999999999999999865432 7999998654322 23356799999999999999999999999887655
Q ss_pred ------EEEEEecCCCChHHHhcccc------------------------------CCcccccccCCeeecCCCceEEec
Q 042735 497 ------ILIYEYLKRGSLATNLSNDA------------------------------AAEELDISSKNVLLDLEHKAHVSD 540 (667)
Q Consensus 497 ------~lv~ey~~~g~L~~~l~~~~------------------------------~~~~~dlk~~NiLld~~~~~kl~D 540 (667)
++||||+++|+|.+++.... ...|.||||+||+++.++.+||+|
T Consensus 101 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~~~kl~D 180 (323)
T 3qup_A 101 GRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVAD 180 (323)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECC
T ss_pred cCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCCCCEEEee
Confidence 99999999999988774321 112349999999999999999999
Q ss_pred ccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccc
Q 042735 541 FGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEM 611 (667)
Q Consensus 541 FGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~ 611 (667)
||+++....... ......||+.|+||| |+.++|||||||++|||+| |+.||...... ....... ..
T Consensus 181 fg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~----~~~~~~~-~~ 255 (323)
T 3qup_A 181 FGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENA----EIYNYLI-GG 255 (323)
T ss_dssp CCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG----GHHHHHH-TT
T ss_pred ccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChH----HHHHHHh-cC
Confidence 999987643321 122345788999999 6789999999999999999 89998643211 1111111 11
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 612 LDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.....+... ...+.+++.+||+.||++|||+.|+++.+...
T Consensus 256 ~~~~~~~~~------~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~ 296 (323)
T 3qup_A 256 NRLKQPPEC------MEEVYDLMYQCWSADPKQRPSFTCLRMELENI 296 (323)
T ss_dssp CCCCCCTTC------CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCcc------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 111111111 12467888899999999999998888887765
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=284.23 Aligned_cols=227 Identities=25% Similarity=0.419 Sum_probs=159.8
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|...+.||+|+||.||+|+... .+|||++..... .....+.|.+|++++++++||||+++++++ .....++||
T Consensus 24 ~~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~ 98 (289)
T 3og7_A 24 GQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAP--TPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVT 98 (289)
T ss_dssp TSCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEE
T ss_pred cceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCC--CHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEE
Confidence 468888999999999999998654 499998865433 234456799999999999999999999965 556789999
Q ss_pred EecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCC--CC
Q 042735 501 EYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS--SN 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~--~~ 553 (667)
||+++|+|.+.+.... ...|.||||+||+++.++.+||+|||+++...... ..
T Consensus 99 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~ 178 (289)
T 3og7_A 99 QWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQ 178 (289)
T ss_dssp ECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC-------------
T ss_pred EecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEEccceecccccccccccc
Confidence 9999999988875321 11234999999999999999999999998654321 22
Q ss_pred cccccccccccCCC---------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchH
Q 042735 554 WSALVGTYRYVAPD---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE---------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (667)
.....||+.|+||| |+.++|||||||++|||+||+.||...... .............+........
T Consensus 179 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-- 253 (289)
T 3og7_A 179 FEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR---DQIIEMVGRGSLSPDLSKVRSN-- 253 (289)
T ss_dssp -----CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCH---HHHHHHHHHTSCCCCTTSSCTT--
T ss_pred ccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchH---HHHHHHhcccccCcchhhcccc--
Confidence 33467999999999 244799999999999999999998632211 1111111111122221111111
Q ss_pred HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
....+.+++.+||+.+|++|||++|+++.|...
T Consensus 254 -~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l 286 (289)
T 3og7_A 254 -CPKRMKRLMAECLKKKRDERPSFPRILAEIEEL 286 (289)
T ss_dssp -SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHccCChhhCCCHHHHHHHHHHH
Confidence 123567888899999999999999999998764
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=284.02 Aligned_cols=232 Identities=21% Similarity=0.328 Sum_probs=161.1
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|...+.||+|+||.||+|.. .++..+|||++...... .....+.+.+|++++++++||||+++++++.+.+..++
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l 109 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLM-DAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNI 109 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhcc-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEE
Confidence 46788999999999999999986 56889999998653222 23445679999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccc----c------------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 499 IYEYLKRGSLATNLSND----A------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~----~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
||||+++|+|.+.+... . ...|.||||+||+++.++.+||+|||+++.....
T Consensus 110 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~ 189 (310)
T 2wqm_A 110 VLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSK 189 (310)
T ss_dssp EEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCC---------
T ss_pred EEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecCC
Confidence 99999999998877431 0 1123499999999999999999999999876544
Q ss_pred CCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchH
Q 042735 551 SSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624 (667)
Q Consensus 551 ~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (667)
........||+.|+||| ++.++|||||||++|||+||+.||..... ..............+..+. ..
T Consensus 190 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~~--~~-- 262 (310)
T 2wqm_A 190 TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM---NLYSLCKKIEQCDYPPLPS--DH-- 262 (310)
T ss_dssp ---------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---C---CHHHHHHHHHTTCSCCCCT--TT--
T ss_pred CccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccch---hHHHHHHHhhcccCCCCcc--cc--
Confidence 33334567999999999 56789999999999999999999753211 0001111111111111111 11
Q ss_pred HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
....+.+++.+||+.||++|||+.||++.+.....
T Consensus 263 -~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~ 297 (310)
T 2wqm_A 263 -YSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHA 297 (310)
T ss_dssp -SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHH
Confidence 11246678889999999999999999998876543
|
| >3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=303.43 Aligned_cols=236 Identities=20% Similarity=0.320 Sum_probs=165.0
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC-----
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA----- 493 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~----- 493 (667)
.++|+..+.||+|+||.||+|.. .+++.||||++.... ......+.+.+|+.++++++|||||++++++...
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~--~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~ 138 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPF--QNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEE 138 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGG--GSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTT
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccc--cChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCcccc
Confidence 36788999999999999999976 457889999986532 1233456789999999999999999999999765
Q ss_pred -CceEEEEEecCCCChHHHhccc----------------------cCCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 494 -RHSILIYEYLKRGSLATNLSND----------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 494 -~~~~lv~ey~~~g~L~~~l~~~----------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
...|+||||++++ +.+.+... ....|.||||+|||++.++.+||+|||+|+.....
T Consensus 139 ~~~~~lv~E~~~~~-l~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 217 (464)
T 3ttj_A 139 FQDVYLVMELMDAN-LCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS 217 (464)
T ss_dssp CCEEEEEEECCSEE-HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCCC-----C
T ss_pred CCeEEEEEeCCCCC-HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEEEEEEEeeeecCCC
Confidence 3569999999876 44333211 12335699999999999999999999999876543
Q ss_pred CCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC-----------CChhhhh---hhhcc
Q 042735 551 SSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL-----------PSPSVIN---MRLDE 610 (667)
Q Consensus 551 ~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~-----------~~~~~~~---~~~~~ 610 (667)
...+..+||+.|+||| |+.++||||+||++|||++|+.||....... +.+.... .....
T Consensus 218 -~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~ 296 (464)
T 3ttj_A 218 -FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRN 296 (464)
T ss_dssp -CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHH
T ss_pred -cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhh
Confidence 2345578999999999 6889999999999999999999986432110 0000000 00000
Q ss_pred ccC--CCC--------------CCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 611 MLD--PRL--------------PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 611 ~~~--~~~--------------~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.+. +.. +............+.+++.+||+.||++|||++|+++|.|+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~~~~ 361 (464)
T 3ttj_A 297 YVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 361 (464)
T ss_dssp HHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGG
T ss_pred HhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcChhhhh
Confidence 000 000 0000011111346788999999999999999999999999974
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-32 Score=304.47 Aligned_cols=288 Identities=18% Similarity=0.178 Sum_probs=216.9
Q ss_pred CCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEE
Q 042735 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLA 80 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~ 80 (667)
+.+++.|++++|.++.+.+..|.++++|++|+|++|.|.+..|..|+.+++|++|+|++|.+++..|..++. .+|+.|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 568899999999998887777888999999999999999888889999999999999999998877777776 5699999
Q ss_pred cccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCC
Q 042735 81 LENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFG 160 (667)
Q Consensus 81 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 160 (667)
|++|.+++..+..+..+++|+.|++++|.+++..|..+.++++|+.|+|++|.+++.. ++.+++|+.|++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 9999998766666788999999999999999888888999999999999999988653 5667788888888887754
Q ss_pred ccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccC
Q 042735 161 EIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240 (667)
Q Consensus 161 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 240 (667)
. ...++|+.|++++|.+....+. + .++|+.|+|++|.+.+ +..+..+++|+.|+|++|.+.+.+|..|+.
T Consensus 207 l-----~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 207 L-----AIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp E-----ECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred c-----cCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 2 2344667777777766543222 1 2466667777766654 345666667777777777766666666666
Q ss_pred CCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCC
Q 042735 241 LTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGR 304 (667)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~ 304 (667)
+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|.+.+
T Consensus 277 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 277 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence 7777777777776665 3555555666777777766654 466666666677777777776654
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=279.24 Aligned_cols=224 Identities=26% Similarity=0.400 Sum_probs=168.2
Q ss_pred CCcCcc-eeecccCeEEEEEEeC---CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 422 DFDAKY-CIGSGRHGSVYRAELP---SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 422 ~f~~~~-~lg~g~~g~vy~~~~~---~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
+|.... .||+|+||.||+|... ++..||||++.... .....+.+.+|++++++++||||+++++++ ..+..+
T Consensus 10 ~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~ 85 (287)
T 1u59_A 10 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT---EKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALM 85 (287)
T ss_dssp GEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEE
T ss_pred HhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCcc---chhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcE
Confidence 455555 8999999999999764 56779999987542 234456799999999999999999999999 556789
Q ss_pred EEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 498 LIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
+||||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++.......
T Consensus 86 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~ 165 (287)
T 1u59_A 86 LVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDS 165 (287)
T ss_dssp EEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSC
T ss_pred EEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECcccceeeeccCcc
Confidence 99999999999998853211 11349999999999999999999999987654322
Q ss_pred C---cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCc
Q 042735 553 N---WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622 (667)
Q Consensus 553 ~---~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (667)
. .....||+.|+||| ++.++|||||||++|||+| |+.||..... ..... .+.....+..+...+
T Consensus 166 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~----~~~~~-~i~~~~~~~~~~~~~- 239 (287)
T 1u59_A 166 YYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG----PEVMA-FIEQGKRMECPPECP- 239 (287)
T ss_dssp EECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT----HHHHH-HHHTTCCCCCCTTCC-
T ss_pred eeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCH----HHHHH-HHhcCCcCCCCCCcC-
Confidence 1 22345789999999 5778999999999999999 9999863321 11111 111111122222222
Q ss_pred hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 623 VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 623 ~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..+.+++.+||+.+|++||++.|++++++....
T Consensus 240 -----~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 272 (287)
T 1u59_A 240 -----PELYALMSDCWIYKWEDRPDFLTVEQRMRACYY 272 (287)
T ss_dssp -----HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 246678889999999999999999999877643
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=288.84 Aligned_cols=228 Identities=26% Similarity=0.408 Sum_probs=172.1
Q ss_pred HcCCcCcceeecccCeEEEEEEeCC-C-----ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEe
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPS-K-----EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSH 492 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~-~-----~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~ 492 (667)
.++|...+.||+|+||.||+|.... + ..||||.+.... .....+.+.+|+++++++ +|||||++++++.+
T Consensus 45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~ 121 (333)
T 2i1m_A 45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA---HADEKEALMSELKIMSHLGQHENIVNLLGACTH 121 (333)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC---CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc---ChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEec
Confidence 3678889999999999999998643 2 369999986543 223456799999999999 89999999999999
Q ss_pred CCceEEEEEecCCCChHHHhcccc--------------------------------------CCcccccccCCeeecCCC
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDA--------------------------------------AAEELDISSKNVLLDLEH 534 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~--------------------------------------~~~~~dlk~~NiLld~~~ 534 (667)
.+..++||||+++|+|.+++.... ...|.||||+||+++.++
T Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~ 201 (333)
T 2i1m_A 122 GGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGH 201 (333)
T ss_dssp SSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEEGGG
T ss_pred CCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEECCCC
Confidence 999999999999999988775321 012349999999999999
Q ss_pred ceEEecccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhh
Q 042735 535 KAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVIN 605 (667)
Q Consensus 535 ~~kl~DFGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~ 605 (667)
.+||+|||+++........ .....||+.|+||| |+.++|||||||++|||+| |+.||...... ....
T Consensus 202 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~----~~~~ 277 (333)
T 2i1m_A 202 VAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVN----SKFY 277 (333)
T ss_dssp EEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSS----HHHH
T ss_pred eEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchh----HHHH
Confidence 9999999999866443321 23356788999999 6789999999999999999 88897632211 1111
Q ss_pred hhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 606 MRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
...........+...+ ..+.+++.+||+.+|++|||++||+++|.....
T Consensus 278 ~~~~~~~~~~~~~~~~------~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~ 326 (333)
T 2i1m_A 278 KLVKDGYQMAQPAFAP------KNIYSIMQACWALEPTHRPTFQQICSFLQEQAQ 326 (333)
T ss_dssp HHHHHTCCCCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCCCCC------HHHHHHHHHHhccChhhCcCHHHHHHHHHHHHH
Confidence 1111111111222111 246678889999999999999999999876543
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=319.89 Aligned_cols=230 Identities=21% Similarity=0.334 Sum_probs=178.5
Q ss_pred HHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCce
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~ 496 (667)
..++|+..+.||+|+||.||+|+.. +++.||||++...... .....+.+.+|.+++..+ +||||+++++++.+.+..
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~-~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~ 417 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVI-QDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRL 417 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHH-HTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccc-cHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEE
Confidence 4578999999999999999999865 5778999987642110 112235688899999987 699999999999999999
Q ss_pred EEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
|+||||+++|+|.+++.... ...|.||||+|||+|.++++||+|||+|+.......
T Consensus 418 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~ 497 (674)
T 3pfq_A 418 YFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGV 497 (674)
T ss_dssp EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCTTCEECCCTTC
T ss_pred EEEEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecceeeccccCCc
Confidence 99999999999998876421 112449999999999999999999999996544444
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCC--CCCCCCCchH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP--RLPPPSPDVQ 624 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 624 (667)
...+.+||+.||||| |+.++|||||||++|||+||+.||..... .... ..++.. .++...+
T Consensus 498 ~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~----~~~~----~~i~~~~~~~p~~~s--- 566 (674)
T 3pfq_A 498 TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE----DELF----QSIMEHNVAYPKSMS--- 566 (674)
T ss_dssp CBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHH----HHHHSSCCCCCTTSC---
T ss_pred ccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH----HHHH----HHHHhCCCCCCccCC---
Confidence 456789999999999 67899999999999999999999864321 1111 112222 2222211
Q ss_pred HHHHHHHHHHHhccccCCCCCCCH-----HHHHHHHHHhhhhhc
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTM-----QTITQQLLFSLVYFS 663 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~-----~ev~~~l~~~~~~~~ 663 (667)
.++.+++.+||+.||++||++ +||+++.||..+.|+
T Consensus 567 ---~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h~ff~~i~w~ 607 (674)
T 3pfq_A 567 ---KEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWE 607 (674)
T ss_dssp ---HHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSSGGGSSCCHH
T ss_pred ---HHHHHHHHHHccCCHHHCCCCCCCcHHHHhcCccccCCCHH
Confidence 246678889999999999997 999999999877664
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-33 Score=286.99 Aligned_cols=226 Identities=25% Similarity=0.388 Sum_probs=169.2
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|... ++..||||.+.... ..+.+.+|++++.+++||||+++++++.+.+..++
T Consensus 28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~------~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 101 (314)
T 3com_A 28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES------DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWI 101 (314)
T ss_dssp --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS------CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH------HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEE
Confidence 467889999999999999999875 58899999986432 23468899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccc--c-----------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 499 IYEYLKRGSLATNLSND--A-----------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~--~-----------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
||||+++|+|.+++... . ...|.||||+||+++.++.+||+|||+++........
T Consensus 102 v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~ 181 (314)
T 3com_A 102 VMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAK 181 (314)
T ss_dssp EEECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBSC
T ss_pred EeecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhccc
Confidence 99999999999887521 1 1123499999999999999999999999876544333
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
.....||+.|+||| |+.++|||||||++|||+||+.||...... ...........+.... + ....
T Consensus 182 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~--~--~~~~ 252 (314)
T 3com_A 182 RNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPM-----RAIFMIPTNPPPTFRK--P--ELWS 252 (314)
T ss_dssp BCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHH-----HHHHHHHHSCCCCCSS--G--GGSC
T ss_pred cCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChH-----HHHHHHhcCCCcccCC--c--ccCC
Confidence 44567999999999 578999999999999999999998632211 0000011111111111 0 1112
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..+.+++.+||+.||++|||+.|++++.|+...
T Consensus 253 ~~l~~li~~~l~~dp~~Rpt~~~ll~~~~~~~~ 285 (314)
T 3com_A 253 DNFTDFVKQCLVKSPEQRATATQLLQHPFVRSA 285 (314)
T ss_dssp HHHHHHHHHHTCSCTTTSCCHHHHTTSHHHHTC
T ss_pred HHHHHHHHHHccCChhhCcCHHHHHhCHHHhcC
Confidence 356788889999999999999999999998754
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=286.11 Aligned_cols=225 Identities=21% Similarity=0.301 Sum_probs=169.0
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|+.. +++.+|+|++..... ...+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (304)
T 2jam_A 9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPA----FRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLV 84 (304)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC----------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccc----cchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEE
Confidence 57888999999999999999874 688999999864321 2234688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeee---cCCCceEEecccccccccCCCC
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLL---DLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLl---d~~~~~kl~DFGla~~~~~~~~ 552 (667)
|||+++|+|.+.+.... ...|.||||+||++ +.++.+||+|||+++.....
T Consensus 85 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~-- 162 (304)
T 2jam_A 85 MQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG-- 162 (304)
T ss_dssp ECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCB--
T ss_pred EEcCCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCC--
Confidence 99999999988764321 11244999999999 78899999999999864322
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
......||+.|+||| |+.++|||||||++|||+||+.||..... ............. .+.+ .....
T Consensus 163 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~----~~~~~~i~~~~~~--~~~~--~~~~~ 234 (304)
T 2jam_A 163 IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETE----SKLFEKIKEGYYE--FESP--FWDDI 234 (304)
T ss_dssp TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCH----HHHHHHHHHCCCC--CCTT--TTTTS
T ss_pred ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH----HHHHHHHHcCCCC--CCcc--ccccC
Confidence 233457999999999 46689999999999999999999853221 1111111111111 1111 00111
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
...+.+++.+||+.||++|||++|++++.|+..
T Consensus 235 ~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~ 267 (304)
T 2jam_A 235 SESAKDFICHLLEKDPNERYTCEKALSHPWIDG 267 (304)
T ss_dssp CHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHS
T ss_pred CHHHHHHHHHHcCCChhHCcCHHHHhcCccccC
Confidence 234677888999999999999999999999864
|
| >2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=282.19 Aligned_cols=231 Identities=24% Similarity=0.332 Sum_probs=174.1
Q ss_pred HHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
..++|+..+.||+|+||.||+|... +++.||||++..... ....+.+.+|+.++++++||||+++++++.+.+..+
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~ 81 (276)
T 2yex_A 5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRA---VDCPENIKKEICINKMLNHENVVKFYGHRREGNIQY 81 (276)
T ss_dssp HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGC---TTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE
T ss_pred eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccc---hhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEE
Confidence 3568899999999999999999875 688899998754322 123467899999999999999999999999999999
Q ss_pred EEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCC--
Q 042735 498 LIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS-- 551 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~-- 551 (667)
+||||+++|+|.+.+..... ..|.||||+||+++.++.+||+|||+++......
T Consensus 82 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~ 161 (276)
T 2yex_A 82 LFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE 161 (276)
T ss_dssp EEEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEE
T ss_pred EEEEecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcch
Confidence 99999999999888764321 1234999999999999999999999998654322
Q ss_pred CCcccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchH
Q 042735 552 SNWSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (667)
.......||+.|+|||. +.++|||||||++|||+||+.||....... . ........ ........
T Consensus 162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~-~~~~~~~~---~~~~~~~~--- 232 (276)
T 2yex_A 162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSC--Q-EYSDWKEK---KTYLNPWK--- 232 (276)
T ss_dssp CCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTS--H-HHHHHHTT---CTTSTTGG---
T ss_pred hcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHH--H-HHHHhhhc---ccccCchh---
Confidence 12345679999999993 347999999999999999999986432110 0 00000000 00011111
Q ss_pred HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.....+.+++.+||+.||++|||++|++++.|+....
T Consensus 233 ~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~~ 269 (276)
T 2yex_A 233 KIDSAPLALLHKILVENPSARITIPDIKKDRWYNKPL 269 (276)
T ss_dssp GSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCCC
T ss_pred hcCHHHHHHHHHHCCCCchhCCCHHHHhcCccccChh
Confidence 1122466788899999999999999999999886543
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=308.55 Aligned_cols=217 Identities=25% Similarity=0.399 Sum_probs=160.0
Q ss_pred eeecccCeEEEEEEeC---CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEecC
Q 042735 428 CIGSGRHGSVYRAELP---SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 428 ~lg~g~~g~vy~~~~~---~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
.||+|+||.||+|.+. ++..||||+++.... ....+.|.+|++++++++|||||+++|++.. +..++||||++
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~---~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~ 418 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTE---KADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAG 418 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCS---STTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCT
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCC---hHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCC
Confidence 6999999999999763 456799999875422 2235679999999999999999999999976 56899999999
Q ss_pred CCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC---ccc
Q 042735 505 RGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN---WSA 556 (667)
Q Consensus 505 ~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~---~~~ 556 (667)
+|+|.+++..... ..|.||||+|||++.++.+||+|||+++........ ...
T Consensus 419 ~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~ 498 (613)
T 2ozo_A 419 GGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSA 498 (613)
T ss_dssp TCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-----------
T ss_pred CCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccC
Confidence 9999998854311 123499999999999999999999999876543221 122
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
..||+.|+||| |+.++|||||||++|||+| |+.||..... ...... +........+... ...
T Consensus 499 ~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~----~~~~~~-i~~~~~~~~p~~~------~~~ 567 (613)
T 2ozo_A 499 GKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG----PEVMAF-IEQGKRMECPPEC------PPE 567 (613)
T ss_dssp ---CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCS----HHHHHH-HHTTCCCCCCTTC------CHH
T ss_pred CCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCH----HHHHHH-HHcCCCCCCCCcC------CHH
Confidence 34678999999 6789999999999999998 9999864321 111111 1111111122212 225
Q ss_pred HHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 630 IMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
+.+++.+||+.+|++||+|.+|++.|....
T Consensus 568 l~~li~~cl~~dP~~RPs~~~l~~~L~~~~ 597 (613)
T 2ozo_A 568 LYALMSDCWIYKWEDRPDFLTVEQRMRACY 597 (613)
T ss_dssp HHHHHHHTTCSSTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 677888999999999999999998887653
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-33 Score=284.10 Aligned_cols=235 Identities=21% Similarity=0.341 Sum_probs=176.3
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCC-----chHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEe
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPS-----DQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSH 492 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~-----~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~ 492 (667)
.++|+..+.||+|+||.||+|... +++.||||++...... ......+.+.+|++++++++ ||||+++++++.+
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 95 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET 95 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence 468889999999999999999874 5788999998643211 11123457889999999996 9999999999999
Q ss_pred CCceEEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEeccccccccc
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLK 548 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~ 548 (667)
.+..++||||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++...
T Consensus 96 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~ 175 (298)
T 1phk_A 96 NTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLD 175 (298)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred CCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCCcEEEecccchhhcC
Confidence 9999999999999999988754311 1234999999999999999999999998765
Q ss_pred CCCCCcccccccccccCCC------------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCC
Q 042735 549 PDSSNWSALVGTYRYVAPD------------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRL 616 (667)
Q Consensus 549 ~~~~~~~~~~Gt~~y~aPE------------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (667)
... ......||+.|+||| ++.++||||||+++|||+||+.||..... ...... +.....
T Consensus 176 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~----~~~~~~----~~~~~~ 246 (298)
T 1phk_A 176 PGE-KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ----MLMLRM----IMSGNY 246 (298)
T ss_dssp TTC-CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHH----HHHTCC
T ss_pred CCc-ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccH----HHHHHH----HhcCCc
Confidence 433 234567999999998 35689999999999999999999753221 111111 111111
Q ss_pred CCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
..+.+........+.+++.+||+.||++|||++|++++.|+.....+
T Consensus 247 ~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~~~ 293 (298)
T 1phk_A 247 QFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQYVVE 293 (298)
T ss_dssp CCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCTTC--
T ss_pred ccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHhChHhhhccch
Confidence 11111111223356788889999999999999999999998765543
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=283.38 Aligned_cols=230 Identities=25% Similarity=0.402 Sum_probs=172.9
Q ss_pred HHcCCcCcceeecccCeEEEEEEe------CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEE
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCS 491 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~------~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~ 491 (667)
..++|...+.||+|+||.||+|+. .+++.||||++..... ....+.+.+|++++.++ +||||+++++++.
T Consensus 25 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~ 101 (316)
T 2xir_A 25 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLLGACT 101 (316)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred chhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCC---cHHHHHHHHHHHHHHhcccCCCeeeEEEEEe
Confidence 357889999999999999999974 3457899999875422 23456799999999999 6999999999998
Q ss_pred eCC-ceEEEEEecCCCChHHHhccccC----------------------------------------CcccccccCCeee
Q 042735 492 HAR-HSILIYEYLKRGSLATNLSNDAA----------------------------------------AEELDISSKNVLL 530 (667)
Q Consensus 492 ~~~-~~~lv~ey~~~g~L~~~l~~~~~----------------------------------------~~~~dlk~~NiLl 530 (667)
..+ ..++||||+++|+|.+++..... ..|.||||+||++
T Consensus 102 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~ 181 (316)
T 2xir_A 102 KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILL 181 (316)
T ss_dssp CTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEE
T ss_pred cCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEE
Confidence 755 48999999999999998864321 1133999999999
Q ss_pred cCCCceEEecccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCCh
Q 042735 531 DLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSP 601 (667)
Q Consensus 531 d~~~~~kl~DFGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~ 601 (667)
+.++.+||+|||+++........ .....||+.|+||| |+.++|||||||++|||+| |+.||..... ..
T Consensus 182 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~---~~ 258 (316)
T 2xir_A 182 SEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI---DE 258 (316)
T ss_dssp CGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCC---SH
T ss_pred CCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccch---hH
Confidence 99999999999999876443221 23456889999999 6789999999999999999 9999853321 11
Q ss_pred hhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 602 SVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
... ...........+...+ ..+.+++.+||+.+|++|||+.|++++|......
T Consensus 259 ~~~-~~~~~~~~~~~~~~~~------~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 311 (316)
T 2xir_A 259 EFC-RRLKEGTRMRAPDYTT------PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 311 (316)
T ss_dssp HHH-HHHHHTCCCCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHH-HHhccCccCCCCCCCC------HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence 111 1111111112222111 2466788899999999999999999999876543
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=284.67 Aligned_cols=226 Identities=23% Similarity=0.412 Sum_probs=162.6
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-----CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-----KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-----~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
.+|...+.||+|+||.||+|.... +..||||++.... .......|.+|++++++++|||||++++++.+.+.
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 120 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY---TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKP 120 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC---CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCC
Confidence 356667899999999999997643 2359999986533 22345679999999999999999999999999999
Q ss_pred eEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
.++||||+++|+|.+++.... ...|.||||+||+++.++.+||+|||+++.....
T Consensus 121 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~ 200 (333)
T 1mqb_A 121 MMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD 200 (333)
T ss_dssp EEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC-------
T ss_pred cEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCcchhhccc
Confidence 999999999999998875421 1123499999999999999999999999876543
Q ss_pred CCC---cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCC
Q 042735 551 SSN---WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620 (667)
Q Consensus 551 ~~~---~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (667)
... .....||+.|+||| ++.++|||||||++|||+| |+.||..... ..... .+........+...
T Consensus 201 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~----~~~~~-~~~~~~~~~~~~~~ 275 (333)
T 1mqb_A 201 PEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN----HEVMK-AINDGFRLPTPMDC 275 (333)
T ss_dssp ----------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH----HHHHH-HHHTTCCCCCCTTC
T ss_pred cccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCH----HHHHH-HHHCCCcCCCcccC
Confidence 221 12235688999999 5678999999999999999 9999853221 11111 11111111111111
Q ss_pred CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 621 ~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
...+.+++.+||+.+|++||++.|+++.|.....
T Consensus 276 ------~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~ 309 (333)
T 1mqb_A 276 ------PSAIYQLMMQCWQQERARRPKFADIVSILDKLIR 309 (333)
T ss_dssp ------BHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 2246678889999999999999999999876543
|
| >2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=291.82 Aligned_cols=227 Identities=15% Similarity=0.185 Sum_probs=167.8
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~l 498 (667)
++|...+.||+|+||.||+|.. .+++.||||.+..... .+.+.+|+++++++ +||||+++++++...+..++
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~l 82 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR------APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAM 82 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS------SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEE
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc------hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEE
Confidence 5788899999999999999986 5688999998764322 12478999999999 89999999999999999999
Q ss_pred EEEecCCCChHHHhccc--c-----------------------CCcccccccCCeeecCCCc-----eEEeccccccccc
Q 042735 499 IYEYLKRGSLATNLSND--A-----------------------AAEELDISSKNVLLDLEHK-----AHVSDFGIAKFLK 548 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~--~-----------------------~~~~~dlk~~NiLld~~~~-----~kl~DFGla~~~~ 548 (667)
||||+ +|+|.+.+... . ...|.||||+|||++.++. +||+|||+++...
T Consensus 83 v~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~ 161 (330)
T 2izr_A 83 VLELL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYI 161 (330)
T ss_dssp EEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESB
T ss_pred EEEeC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeee
Confidence 99999 99999887632 1 1123499999999999887 9999999998754
Q ss_pred CCCC-------CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCC
Q 042735 549 PDSS-------NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPR 615 (667)
Q Consensus 549 ~~~~-------~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (667)
.... .....+||+.|+||| |+.++|||||||++|||+||+.||......... .... .+....
T Consensus 162 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~-~~~~----~i~~~~ 236 (330)
T 2izr_A 162 DPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLK-ERYQ----KIGDTK 236 (330)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHH-HHHH----HHHHHH
T ss_pred cCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHH-HHHH----HHHhhh
Confidence 3322 124578999999998 577899999999999999999998643211000 0000 000000
Q ss_pred CCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 616 LPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.+.+..........+.+++..||+.+|.+||++++|.+.+....
T Consensus 237 ~~~~~~~~~~~~p~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~ 280 (330)
T 2izr_A 237 RATPIEVLCENFPEMATYLRYVRRLDFFEKPDYDYLRKLFTDLF 280 (330)
T ss_dssp HHSCHHHHTTTCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHhccChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence 00000000000115778888999999999999999999876543
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-33 Score=288.52 Aligned_cols=236 Identities=25% Similarity=0.350 Sum_probs=166.4
Q ss_pred HcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHH--HHhcCCCCeeEEEEEEEe-----
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEA--LTKIRHRNIVKFYGFCSH----- 492 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~--l~~l~H~niv~~~g~~~~----- 492 (667)
.++|...+.||+|+||.||+|+. +++.||||++... ....+..|.++ +..++||||+++++++..
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~-------~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~ 83 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA-------NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADG 83 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG-------GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTS
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc-------chhhHHHHHHHHHHHhccCcchhhheecccccccCC
Confidence 46888999999999999999977 5788999997531 22344455544 456899999999986643
Q ss_pred CCceEEEEEecCCCChHHHhccc-----------------------c---------CCcccccccCCeeecCCCceEEec
Q 042735 493 ARHSILIYEYLKRGSLATNLSND-----------------------A---------AAEELDISSKNVLLDLEHKAHVSD 540 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~-----------------------~---------~~~~~dlk~~NiLld~~~~~kl~D 540 (667)
....++||||+++|+|.+++... . ...|.||||+|||++.++.+||+|
T Consensus 84 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~D 163 (336)
T 3g2f_A 84 RMEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISD 163 (336)
T ss_dssp CEEEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECC
T ss_pred CceEEEEEecCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEee
Confidence 22568999999999998876421 1 334569999999999999999999
Q ss_pred ccccccccCCC--------CCcccccccccccCCCCC-------------CCchHHHHHHHHHHHHhCCCCCCCCccCCC
Q 042735 541 FGIAKFLKPDS--------SNWSALVGTYRYVAPDYR-------------KKCDVYSFRVLALEVIKGKHPRGFVSSILP 599 (667)
Q Consensus 541 FGla~~~~~~~--------~~~~~~~Gt~~y~aPE~~-------------~~~DV~sfGvvl~ElltG~~p~~~~~~~~~ 599 (667)
||+++...... ......+||+.|+|||.. .++|||||||++|||+||+.|+........
T Consensus 164 FG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~ 243 (336)
T 3g2f_A 164 FGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPE 243 (336)
T ss_dssp CTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCC
T ss_pred ccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhH
Confidence 99998764321 112345799999999931 368999999999999999877532111100
Q ss_pred C-------------hhhh-hhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 600 S-------------PSVI-NMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 600 ~-------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
. .... .........+.++............+.+++.+||+.||++|||++|+++.|......+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~ 321 (336)
T 3g2f_A 244 YQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWE 321 (336)
T ss_dssp CCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCC
T ss_pred HHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHH
Confidence 0 0000 00111122233333333323344568889999999999999999999999988765544
|
| >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-33 Score=290.20 Aligned_cols=238 Identities=19% Similarity=0.258 Sum_probs=169.2
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe------
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH------ 492 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~------ 492 (667)
.++|+..+.||+|+||.||+|+. .+++.||||++....... .....+.+|++++++++|||||++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 93 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE--GFPITALREIKILQLLKHENVVNLIEICRTKASPYN 93 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSS--SSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-----
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccc--cchHHHHHHHHHHHhccCCCcccHhheeeccccccc
Confidence 46889999999999999999987 568899999886543322 223468899999999999999999999987
Q ss_pred --CCceEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccc
Q 042735 493 --ARHSILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAK 545 (667)
Q Consensus 493 --~~~~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~ 545 (667)
.+..++||||+++ ++.+.+.... ...|.||||+|||++.++.+||+|||+++
T Consensus 94 ~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 172 (351)
T 3mi9_A 94 RCKGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLAR 172 (351)
T ss_dssp ---CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred cCCceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCCEEEccchhcc
Confidence 3468999999985 6655543321 11244999999999999999999999998
Q ss_pred cccCC----CCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhh----------
Q 042735 546 FLKPD----SSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVI---------- 604 (667)
Q Consensus 546 ~~~~~----~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~---------- 604 (667)
..... ........||+.|+||| |+.++|||||||++|||+||+.||...........+.
T Consensus 173 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~ 252 (351)
T 3mi9_A 173 AFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEV 252 (351)
T ss_dssp ECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTT
T ss_pred cccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhh
Confidence 76422 12234567999999999 5678999999999999999999986322100000000
Q ss_pred -----hhhhccccCCCCCCCCCchHHH------HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 605 -----NMRLDEMLDPRLPPPSPDVQGK------LISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 605 -----~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.......... ........... ...+.+++.+||+.||++|||++|++++.||....
T Consensus 253 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~ 319 (351)
T 3mi9_A 253 WPNVDNYELYEKLEL-VKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDP 319 (351)
T ss_dssp STTGGGCGGGTSSCC-CSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGSSS
T ss_pred ccccccchhhccccc-ccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCCCCcCCCC
Confidence 0000000000 00000111111 12467899999999999999999999999996543
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=294.09 Aligned_cols=235 Identities=23% Similarity=0.306 Sum_probs=172.5
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC--ceE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR--HSI 497 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~--~~~ 497 (667)
++|...+.||+|+||.||+|+.. +++.||||++..... ....+.+.+|++++++++|||||++++++.+.. ..+
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~ 85 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISF---LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV 85 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGG---GSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccc---cchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeE
Confidence 46888899999999999999875 488999999864221 123456889999999999999999999998765 679
Q ss_pred EEEEecCCCChHHHhccccC---------------------------CcccccccCCeee----cCCCceEEeccccccc
Q 042735 498 LIYEYLKRGSLATNLSNDAA---------------------------AEELDISSKNVLL----DLEHKAHVSDFGIAKF 546 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~---------------------------~~~~dlk~~NiLl----d~~~~~kl~DFGla~~ 546 (667)
+||||+++|+|.+.+..... ..|.||||+|||+ +.++.+||+|||+++.
T Consensus 86 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~ 165 (396)
T 4eut_A 86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE 165 (396)
T ss_dssp EEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEE
T ss_pred EEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecCCCceE
Confidence 99999999999998865321 1134999999999 7888899999999987
Q ss_pred ccCCCCCcccccccccccCCCC--------------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccc-
Q 042735 547 LKPDSSNWSALVGTYRYVAPDY--------------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEM- 611 (667)
Q Consensus 547 ~~~~~~~~~~~~Gt~~y~aPE~--------------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~- 611 (667)
..... ......||+.|+|||. +.++|||||||++|||+||+.||....................
T Consensus 166 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p 244 (396)
T 4eut_A 166 LEDDE-QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKP 244 (396)
T ss_dssp CCCGG-GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCC
T ss_pred ccCCC-ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCC
Confidence 65432 2334679999999993 3478999999999999999999853221111111111100000
Q ss_pred ----------------cCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 612 ----------------LDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 612 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.....+............+.+++.+||+.||++|||++|+++.+....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il 308 (396)
T 4eut_A 245 SGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDIL 308 (396)
T ss_dssp TTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHH
T ss_pred cccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHh
Confidence 001122222222334456778899999999999999999999887653
|
| >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=299.15 Aligned_cols=240 Identities=21% Similarity=0.298 Sum_probs=168.7
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC-----C
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA-----R 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~-----~ 494 (667)
++|...+.||+|+||.||+|.. .+++.||||++..... .....+.+.+|++++++++|||||++++++... .
T Consensus 26 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 103 (432)
T 3n9x_A 26 DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFE--DLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD 103 (432)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTT--SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred CCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhc--ChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence 5788999999999999999986 4578899999875432 234456799999999999999999999999776 5
Q ss_pred ceEEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCC
Q 042735 495 HSILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
..|+||||++ |+|.+.+..... ..|.||||+|||++.++.+||+|||+|+.....
T Consensus 104 ~~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFGla~~~~~~ 182 (432)
T 3n9x_A 104 ELYIVLEIAD-SDLKKLFKTPIFLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSE 182 (432)
T ss_dssp CEEEEEECCS-EEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC---
T ss_pred eEEEEEecCC-cCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCCccccccc
Confidence 7899999987 589887764321 123499999999999999999999999876432
Q ss_pred CC----------------------CcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccC-CC-
Q 042735 551 SS----------------------NWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSI-LP- 599 (667)
Q Consensus 551 ~~----------------------~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~-~~- 599 (667)
.. ..+..+||+.|+||| |+.++||||+||++|||+||..|+...... .+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~p~ 262 (432)
T 3n9x_A 183 KDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPL 262 (432)
T ss_dssp ----------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSSGGGCCCS
T ss_pred ccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccccccccccccc
Confidence 21 135678999999999 577899999999999999976664311000 00
Q ss_pred --Chh--------------------hhh----------------------hhhccccCCCCCCCCC-chHHHHHHHHHHH
Q 042735 600 --SPS--------------------VIN----------------------MRLDEMLDPRLPPPSP-DVQGKLISIMEVA 634 (667)
Q Consensus 600 --~~~--------------------~~~----------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 634 (667)
... ... ...........+.... ........+.+++
T Consensus 263 f~g~~~~~~~~~~~~~~~~~~~~~~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl 342 (432)
T 3n9x_A 263 FPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPINLKQKYPSISDDGINLL 342 (432)
T ss_dssp CCCSCSCC----------CHHHHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHH
T ss_pred CCCccccccCcccccccccccchHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHH
Confidence 000 000 0000000000000000 0001123567888
Q ss_pred HhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 635 FSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 635 ~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
.+||+.||++|||++|++++.|+..+...
T Consensus 343 ~~mL~~dP~~R~ta~e~L~Hp~f~~~~~~ 371 (432)
T 3n9x_A 343 ESMLKFNPNKRITIDQALDHPYLKDVRKK 371 (432)
T ss_dssp HHHSCSSTTTSCCHHHHHTCGGGTTTCCT
T ss_pred HHHhcCCcccCCCHHHHhcChhhhhccCc
Confidence 99999999999999999999999876543
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=278.52 Aligned_cols=293 Identities=24% Similarity=0.321 Sum_probs=246.6
Q ss_pred CCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEE
Q 042735 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLA 80 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~ 80 (667)
+++|+.|++++|.++.+ | .+..+++|++|+|++|++++. |. +.++++|++|++++|.+++ +|. +.. .+|++|+
T Consensus 43 l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-ISA-LQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEE
T ss_pred cccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-chH-HcCCCcCCEEE
Confidence 56899999999999865 4 378899999999999999864 44 9999999999999999975 443 444 5799999
Q ss_pred cccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCC
Q 042735 81 LENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFG 160 (667)
Q Consensus 81 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 160 (667)
|++|.+.+..+ +..+.+|+.|++++|.....++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+
T Consensus 117 l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 117 LNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp CTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred CcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence 99999986543 8889999999999997665544 48999999999999999986544 8899999999999999875
Q ss_pred ccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccC
Q 042735 161 EIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240 (667)
Q Consensus 161 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 240 (667)
..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..
T Consensus 192 ~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~ 263 (347)
T 4fmz_A 192 ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKD 263 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTT
T ss_pred ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhc
Confidence 433 7889999999999999987554 8889999999999999876443 88999999999999998753 46889
Q ss_pred CCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCcCcccccCCcccc
Q 042735 241 LTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECCE 317 (667)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~~ 317 (667)
+++|+.|++++|.+++. ..+..+++|+.|++++|++.+..|..++.+++|++|++++|.+++..| +..++.+.
T Consensus 264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 99999999999999875 468889999999999999988888999999999999999999977655 44444333
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=283.21 Aligned_cols=217 Identities=23% Similarity=0.374 Sum_probs=164.5
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-C-------ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-K-------EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH 492 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-~-------~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~ 492 (667)
++|...+.||+|+||.||+|.... + ..+|+|++... .....+.|.+|++++++++|||||++++++.+
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~ 83 (289)
T 4fvq_A 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKA----HRNYSESFFEAASMMSKLSHKHLVLNYGVCVC 83 (289)
T ss_dssp GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGG----GGGGHHHHHHHHHHHHTSCCTTBCCEEEEECC
T ss_pred hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccc----cHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEe
Confidence 578888999999999999997643 3 36999987542 22345679999999999999999999999999
Q ss_pred CCceEEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCc--------eEEe
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHK--------AHVS 539 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~--------~kl~ 539 (667)
++..++||||+++|+|.+++..... ..|.||||+|||++.++. +||+
T Consensus 84 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~ 163 (289)
T 4fvq_A 84 GDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLS 163 (289)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCEEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCcccccccceeeec
Confidence 9999999999999999988754321 123499999999998887 9999
Q ss_pred cccccccccCCCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCC-CCCCccCCCChhhhhhhhccc
Q 042735 540 DFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHP-RGFVSSILPSPSVINMRLDEM 611 (667)
Q Consensus 540 DFGla~~~~~~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p-~~~~~~~~~~~~~~~~~~~~~ 611 (667)
|||+++.... .....||+.|+||| ++.++|||||||++|||+||..| +..... ....... .
T Consensus 164 Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~-----~~~~~~~--~ 232 (289)
T 4fvq_A 164 DPGISITVLP----KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDS-----QRKLQFY--E 232 (289)
T ss_dssp CCCSCTTTSC----HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH-----HHHHHHH--H
T ss_pred cCcccccccC----ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccch-----HHHHHHh--h
Confidence 9999975432 23456899999999 56789999999999999996554 332111 0000000 0
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 612 LDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.....+...+. .+.+++.+||+.||++|||++|++++|...
T Consensus 233 ~~~~~~~~~~~------~l~~li~~~l~~dp~~Rps~~~ll~~l~~l 273 (289)
T 4fvq_A 233 DRHQLPAPKAA------ELANLINNCMDYEPDHRPSFRAIIRDLNSL 273 (289)
T ss_dssp TTCCCCCCSSC------TTHHHHHHHSCSSGGGSCCHHHHHHHHHTC
T ss_pred ccCCCCCCCCH------HHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence 11222222222 355778899999999999999999998765
|
| >3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-33 Score=291.02 Aligned_cols=229 Identities=24% Similarity=0.332 Sum_probs=168.7
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-----CCCeeEEEEEEEeC
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-----HRNIVKFYGFCSHA 493 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----H~niv~~~g~~~~~ 493 (667)
.++|...+.||+|+||.||+|+. .+++.||||++... ....+.+.+|++++.+++ |||||++++++...
T Consensus 34 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~ 108 (360)
T 3llt_A 34 NNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-----KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYY 108 (360)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-----HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEET
T ss_pred cCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-----hhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeEC
Confidence 46899999999999999999987 56788999998632 233456888999999997 99999999999999
Q ss_pred CceEEEEEecCCCChHHHhccccC--------------------------CcccccccCCeeecC---------------
Q 042735 494 RHSILIYEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDL--------------- 532 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~--------------- 532 (667)
+..++||||+ +|+|.+.+..... ..|.||||+|||++.
T Consensus 109 ~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~ 187 (360)
T 3llt_A 109 DHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTD 187 (360)
T ss_dssp TEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCEEEEEEECTTT
T ss_pred CeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEccccccccccchhcccc
Confidence 9999999999 8999888754321 123499999999975
Q ss_pred ----------CCceEEecccccccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCcc
Q 042735 533 ----------EHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSS 596 (667)
Q Consensus 533 ----------~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~ 596 (667)
++.+||+|||+++..... .....||+.|+||| |+.++|||||||++|||+||+.||.....
T Consensus 188 ~~~~~~~~~~~~~~kl~DFG~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~ 264 (360)
T 3llt_A 188 GKKIQIYRTKSTGIKLIDFGCATFKSDY---HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEH 264 (360)
T ss_dssp CCEEEEEEESCCCEEECCCTTCEETTSC---CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSSH
T ss_pred cccccccccCCCCEEEEeccCceecCCC---CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCCcH
Confidence 889999999999865432 23568999999999 68899999999999999999999863221
Q ss_pred CC----------CChhhh-hhh----hcccc-----CCCCCCCCCchHH--------------HHHHHHHHHHhccccCC
Q 042735 597 IL----------PSPSVI-NMR----LDEML-----DPRLPPPSPDVQG--------------KLISIMEVAFSCLDVSP 642 (667)
Q Consensus 597 ~~----------~~~~~~-~~~----~~~~~-----~~~~~~~~~~~~~--------------~~~~~~~~~~~Cl~~~p 642 (667)
.. +.+... ... ....+ ...++........ ....+.+++.+||+.||
T Consensus 265 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP 344 (360)
T 3llt_A 265 MEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDP 344 (360)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSG
T ss_pred HHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCCh
Confidence 00 000000 000 00000 0001111111000 01346689999999999
Q ss_pred CCCCCHHHHHHHHHH
Q 042735 643 ESRPTMQTITQQLLF 657 (667)
Q Consensus 643 ~~RPt~~ev~~~l~~ 657 (667)
++|||++|++++.|+
T Consensus 345 ~~Rpta~elL~hp~f 359 (360)
T 3llt_A 345 TLRPSPAELLKHKFL 359 (360)
T ss_dssp GGSCCHHHHTTSGGG
T ss_pred hhCCCHHHHhcCccc
Confidence 999999999999886
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=286.41 Aligned_cols=228 Identities=25% Similarity=0.369 Sum_probs=168.6
Q ss_pred cCCcCcceeecccCeEEEEEEe-----CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe--C
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH--A 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-----~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~--~ 493 (667)
++|...+.||+|+||.||+|++ .++..||||++... .....+.+.+|++++++++||||+++++++.. .
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~----~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~ 98 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS----GPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGR 98 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC----CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSS
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC----CHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCC
Confidence 5788889999999999999984 35778999998653 23345679999999999999999999999874 5
Q ss_pred CceEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEeccccccccc
Q 042735 494 RHSILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLK 548 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~ 548 (667)
...++||||+++|+|.+++.... ...|.||||+||+++.++.+||+|||+++...
T Consensus 99 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~ 178 (327)
T 3lxl_A 99 QSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLP 178 (327)
T ss_dssp CEEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCGGGCEECC
T ss_pred ceEEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEcccccceecc
Confidence 56899999999999998875421 11234999999999999999999999998765
Q ss_pred CCCC---CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccC--------CCChh--hhhhhhc
Q 042735 549 PDSS---NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSI--------LPSPS--VINMRLD 609 (667)
Q Consensus 549 ~~~~---~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~--------~~~~~--~~~~~~~ 609 (667)
.... ......||+.|+||| |+.++|||||||++|||+||+.|+...... ..... .......
T Consensus 179 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (327)
T 3lxl_A 179 LDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLE 258 (327)
T ss_dssp TTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHH
T ss_pred cCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhh
Confidence 4332 123356888999999 567999999999999999999997421110 00000 0000011
Q ss_pred cccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 610 EMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.......+... ...+.+++.+||+.||++|||++|++++|...
T Consensus 259 ~~~~~~~~~~~------~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~ 301 (327)
T 3lxl_A 259 EGQRLPAPPAC------PAEVHELMKLCWAPSPQDRPSFSALGPQLDML 301 (327)
T ss_dssp TTCCCCCCTTC------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC
T ss_pred cccCCCCCCcc------cHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 11111111111 22467788899999999999999999988765
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=278.08 Aligned_cols=286 Identities=21% Similarity=0.246 Sum_probs=174.9
Q ss_pred CCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcc
Q 042735 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALE 82 (667)
Q Consensus 4 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~ 82 (667)
+++.+++++|.++. +|..+ .++|++|+|++|.+.+..|..|.++++|++|+|++|++++..|..+.. .+|++|+|+
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 46667777766664 34433 256677777777766655666677777777777777766655665655 346777777
Q ss_pred cccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccc--cccchhhhcCCCCCEEECcCCccCC
Q 042735 83 NNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMR--GTISEAFGIYLNLTFLDISDNNFFG 160 (667)
Q Consensus 83 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~L~~n~l~~ 160 (667)
+|.++ .+|..+. .+|+.|++++|.+++..+..+.++++|+.|++++|.++ +..+..+..+ +|++|++++|.+.+
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 76665 3333333 56666666666666555555666666666666666664 2445555555 66666666666654
Q ss_pred ccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccC
Q 042735 161 EIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240 (667)
Q Consensus 161 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 240 (667)
+|..+. ++|+.|++++|.+++..+..+.++++|+.|+|++|.+.+..+..|..+++|+.|++++|++. .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 343332 56666666666666655566666666666666666666655556666666666666666665 45556666
Q ss_pred CCCCCeeeccCCcCCccchhhhhcc------cCCCeecCCCccCc--cccchhhhcCCCCCEEECcCC
Q 042735 241 LTKLEFLNLSTNRFSSLIPESLGNL------LKLHYLDLSKYQFI--QELPKELGKLVQLSELELSHN 300 (667)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~ls~n~~~--~~~p~~l~~l~~L~~L~l~~n 300 (667)
+++|+.|++++|.+++..+..+... ..|+.|++++|.+. ...|..+..+++|+.+++++|
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 6666666666666666555544432 44566666666654 445555666666666666665
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-32 Score=280.63 Aligned_cols=226 Identities=23% Similarity=0.384 Sum_probs=172.9
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|... ++..+|||++..... ......+.+.+|++++++++||||+++++++.+.+..++
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 91 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQL-EKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYL 91 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHH-HHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEccccc-chHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEE
Confidence 367889999999999999999875 567899998753210 011123568999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||+++|+|.+.+.... ...|.||||+||+++.++.+||+|||++...... ..
T Consensus 92 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~--~~ 169 (284)
T 2vgo_A 92 MLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL--RR 169 (284)
T ss_dssp EECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSS--CB
T ss_pred EEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCEEEecccccccCccc--cc
Confidence 999999999988775321 1124499999999999999999999999765432 22
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
....||+.|+||| ++.++||||||+++|||+||+.||..... ........ ..+...+...+ .
T Consensus 170 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~~~-~~~~~~~~~~~------~ 237 (284)
T 2vgo_A 170 RTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSH-----TETHRRIV-NVDLKFPPFLS------D 237 (284)
T ss_dssp CCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHHH-TTCCCCCTTSC------H
T ss_pred ccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCH-----hHHHHHHh-ccccCCCCcCC------H
Confidence 3467999999999 57799999999999999999999863221 11111110 11222222222 2
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.+.+++.+||+.+|++|||++|++++.|+...
T Consensus 238 ~~~~li~~~l~~~p~~Rps~~~ll~h~~~~~~ 269 (284)
T 2vgo_A 238 GSKDLISKLLRYHPPQRLPLKGVMEHPWVKAN 269 (284)
T ss_dssp HHHHHHHHHSCSSGGGSCCHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhhcCHhhCCCHHHHhhCHHHHhh
Confidence 45678889999999999999999999998754
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-32 Score=277.19 Aligned_cols=225 Identities=22% Similarity=0.389 Sum_probs=165.4
Q ss_pred HcCCcCcceeecccCeEEEEEEeCC----CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPS----KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~----~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
.++|...+.||+|+||.||+|.... +..||||.+.... .....+.|.+|++++++++||||+++++++.+ +.
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~ 86 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC---TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EP 86 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS---CHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SS
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc---CchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CC
Confidence 4678889999999999999997533 2359999886542 22345679999999999999999999999865 45
Q ss_pred eEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
.++||||+++|+|.+.+.... ...|.||||+||+++.++.+||+|||+++.....
T Consensus 87 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 166 (281)
T 3cc6_A 87 TWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDE 166 (281)
T ss_dssp CEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC---
T ss_pred CEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEeCccCCCcccccc
Confidence 789999999999988875321 1123499999999999999999999999876543
Q ss_pred CC-CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCc
Q 042735 551 SS-NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622 (667)
Q Consensus 551 ~~-~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (667)
.. ......||+.|+||| |+.++|||||||++|||+| |+.||...... .... ..........+...+
T Consensus 167 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~----~~~~-~~~~~~~~~~~~~~~- 240 (281)
T 3cc6_A 167 DYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENK----DVIG-VLEKGDRLPKPDLCP- 240 (281)
T ss_dssp ------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGG----GHHH-HHHHTCCCCCCTTCC-
T ss_pred cccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChH----HHHH-HHhcCCCCCCCCCCC-
Confidence 22 123456788999999 5778999999999999999 99998532211 1111 111111111111111
Q ss_pred hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 623 VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 623 ~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..+.+++.+||+.+|++|||+.|++++|....
T Consensus 241 -----~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~ 272 (281)
T 3cc6_A 241 -----PVLYTLMTRCWDYDPSDRPRFTELVCSLSDVY 272 (281)
T ss_dssp -----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHccCCchhCcCHHHHHHHHHHHH
Confidence 24667888999999999999999999987653
|
| >2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=9.9e-33 Score=279.44 Aligned_cols=231 Identities=23% Similarity=0.346 Sum_probs=166.5
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|... +++.||||++..... ......+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKI-RSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH-HHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccc-cchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 57888899999999999999875 688999998753210 0111245788999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
|||+++++|.+++.... ...|.||||+||+++.++.+||+|||+++...... ...
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~-~~~ 168 (276)
T 2h6d_A 90 MEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE-FLR 168 (276)
T ss_dssp EECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC------
T ss_pred EeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEEEeecccccccCCCc-cee
Confidence 99999999988875321 11244999999999999999999999998765432 233
Q ss_pred cccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 556 ALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 556 ~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
...||+.|+|||. +.++||||||+++|||+||+.||..... ..... ..... ....+...+ .
T Consensus 169 ~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~----~~~~~-~~~~~-~~~~~~~~~------~ 236 (276)
T 2h6d_A 169 TSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHV----PTLFK-KIRGG-VFYIPEYLN------R 236 (276)
T ss_dssp --------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHH-HHHHC-CCCCCTTSC------H
T ss_pred cccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcH----HHHHH-HhhcC-cccCchhcC------H
Confidence 4579999999993 3579999999999999999999853221 11111 11110 111121111 2
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhccC
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYA 665 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~~~ 665 (667)
.+.+++.+||+.||++|||++|++++.|+....-++.
T Consensus 237 ~l~~li~~~l~~~p~~Rps~~~~l~h~~~~~~~~~~~ 273 (276)
T 2h6d_A 237 SVATLLMHMLQVDPLKRATIKDIREHEWFKQDLPSYL 273 (276)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHHSHHHHTTCCGGG
T ss_pred HHHHHHHHHccCChhhCCCHHHHHhChhhccCchhcc
Confidence 4667888999999999999999999999976654443
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.1e-33 Score=284.98 Aligned_cols=227 Identities=20% Similarity=0.332 Sum_probs=164.0
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|...+.||+|+||.||+|... +++.||||++..... ......+.+.+|+.++++++||||+++++++...+..++
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l 111 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLS-SDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV 111 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGG-GSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccc-cCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence 578999999999999999999875 678899998864322 122334679999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCC-CC
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS-SN 553 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~-~~ 553 (667)
||||+++|+|.+++.... ...|.||||+||+++.++.+||+|||+++...... ..
T Consensus 112 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~ 191 (309)
T 2h34_A 112 DMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQ 191 (309)
T ss_dssp EEECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC-----------
T ss_pred EEEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCCCEEEecCccCcccccccccc
Confidence 999999999998875421 11234999999999999999999999998654332 12
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccC-C-CCCCCCCchHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD-P-RLPPPSPDVQG 625 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~ 625 (667)
.....||+.|+||| ++.++||||||+++|||+||+.||...... ........... + ..++..+
T Consensus 192 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---- 262 (309)
T 2h34_A 192 LGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS-----VMGAHINQAIPRPSTVRPGIP---- 262 (309)
T ss_dssp -----CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH-----HHHHHHHSCCCCGGGTSTTCC----
T ss_pred ccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH-----HHHHHhccCCCCccccCCCCC----
Confidence 23457999999999 467999999999999999999998643211 11111111100 0 0111111
Q ss_pred HHHHHHHHHHhccccCCCCCC-CHHHHHHHHHHh
Q 042735 626 KLISIMEVAFSCLDVSPESRP-TMQTITQQLLFS 658 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RP-t~~ev~~~l~~~ 658 (667)
..+.+++.+||+.||++|| |++++++.+...
T Consensus 263 --~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~ 294 (309)
T 2h34_A 263 --VAFDAVIARGMAKNPEDRYVTCGDLSAAAHAA 294 (309)
T ss_dssp --THHHHHHHHHTCSSGGGSCSSHHHHHHHHHHT
T ss_pred --HHHHHHHHHhccCCHHHHHHhHHHHHHHHHHH
Confidence 2466788899999999999 999999988764
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-32 Score=282.91 Aligned_cols=229 Identities=24% Similarity=0.360 Sum_probs=165.8
Q ss_pred cCCcCcceeecccCeEEEEEEe-----CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC--
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA-- 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-----~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~-- 493 (667)
..|+..+.||+|+||.||+|++ .+++.||||++..... ....+.+.+|++++++++||||+++++++.+.
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~ 97 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESG---GNHIADLKKEIEILRNLYHENIVKYKGICTEDGG 97 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC--------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEeccccc---chhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCC
Confidence 3577888999999999999984 3578899999865322 12345789999999999999999999999876
Q ss_pred CceEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEeccccccccc
Q 042735 494 RHSILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLK 548 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~ 548 (667)
...++||||+++|+|.+++.... ...|.||||+||+++.++.+||+|||+++...
T Consensus 98 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~ 177 (302)
T 4e5w_A 98 NGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIE 177 (302)
T ss_dssp CCEEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred ceEEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCCEEECccccccccc
Confidence 66899999999999998874321 11234999999999999999999999998765
Q ss_pred CCCC---CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCcc-----CCCCh-h-hhh---hhhc
Q 042735 549 PDSS---NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSS-----ILPSP-S-VIN---MRLD 609 (667)
Q Consensus 549 ~~~~---~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~-----~~~~~-~-~~~---~~~~ 609 (667)
.... ......||..|+||| ++.++|||||||++|||+||+.|+..... ..+.. . ... ....
T Consensus 178 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (302)
T 4e5w_A 178 TDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLK 257 (302)
T ss_dssp TTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHH
T ss_pred CCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHh
Confidence 4432 123456888999999 46789999999999999999988532100 00000 0 000 0011
Q ss_pred cccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 610 EMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.......+... ...+.+++.+||+.||++|||++|+++.|...
T Consensus 258 ~~~~~~~~~~~------~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 300 (302)
T 4e5w_A 258 EGKRLPCPPNC------PDEVYQLMRKCWEFQPSNRTSFQNLIEGFEAL 300 (302)
T ss_dssp TTCCCCCCTTC------CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred ccCCCCCCCCC------CHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 11111111111 12467888899999999999999999998753
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-32 Score=284.13 Aligned_cols=226 Identities=19% Similarity=0.363 Sum_probs=171.1
Q ss_pred HHcCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH 492 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~ 492 (667)
..++|...+.||+|+||.||+|... .+..||||++.... .......|.+|++++++++||||+++++++.+
T Consensus 23 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~ 99 (322)
T 1p4o_A 23 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA---SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ 99 (322)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS---CHHHHHHHHHHHHHGGGCCCTTBCCEEEEECS
T ss_pred hhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccccc---CHHHHHHHHHHHHHHHhcCCCCEeeeEEEEcc
Confidence 3467889999999999999999754 36779999986532 22345679999999999999999999999999
Q ss_pred CCceEEEEEecCCCChHHHhcccc----------------------------------CCcccccccCCeeecCCCceEE
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDA----------------------------------AAEELDISSKNVLLDLEHKAHV 538 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~----------------------------------~~~~~dlk~~NiLld~~~~~kl 538 (667)
.+..++||||+++|+|.+++.... ...|.||||+||+++.++.+||
T Consensus 100 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~~~~kl 179 (322)
T 1p4o_A 100 GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKI 179 (322)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEE
T ss_pred CCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEcCCCeEEE
Confidence 999999999999999998775311 1123499999999999999999
Q ss_pred ecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhc
Q 042735 539 SDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLD 609 (667)
Q Consensus 539 ~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~ 609 (667)
+|||+++....... ......||+.|+||| |+.++|||||||++|||+| |+.||..... .....
T Consensus 180 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~----~~~~~---- 251 (322)
T 1p4o_A 180 GDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN----EQVLR---- 251 (322)
T ss_dssp CCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH----HHHHH----
T ss_pred CcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH----HHHHH----
Confidence 99999986543321 123346789999999 5778999999999999999 8888753221 11111
Q ss_pred cccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 610 EMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.+.....+...... ...+.+++.+||+.+|++|||+.|++++|...
T Consensus 252 ~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~ 297 (322)
T 1p4o_A 252 FVMEGGLLDKPDNC---PDMLFELMRMCWQYNPKMRPSFLEIISSIKEE 297 (322)
T ss_dssp HHHTTCCCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGG
T ss_pred HHHcCCcCCCCCCC---CHHHHHHHHHHcCCCcccCcCHHHHHHHHHHh
Confidence 11111111111111 12466788899999999999999999998764
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.8e-32 Score=277.56 Aligned_cols=228 Identities=20% Similarity=0.311 Sum_probs=166.5
Q ss_pred CCcCcceeecccCeEEEEEEeCC-C---ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce-
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPS-K---EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS- 496 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~-~---~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~- 496 (667)
.|...+.||+|+||.||+|...+ + ..+|+|++.... .....+.|.+|++++++++|||||++++++.+.+..
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 98 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRIT---EMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLP 98 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCC---SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCC
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccc---cHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCc
Confidence 34556789999999999997532 2 269999886532 233456799999999999999999999999876655
Q ss_pred EEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCC-
Q 042735 497 ILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD- 550 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~- 550 (667)
++||||+.+|+|.+.+..... ..|.||||+||+++.++.+||+|||+++.....
T Consensus 99 ~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~ 178 (298)
T 3pls_A 99 HVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDRE 178 (298)
T ss_dssp EEEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGG
T ss_pred EEEEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCc
Confidence 999999999999988864211 123499999999999999999999999865432
Q ss_pred ---CCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCC-CCCccCCCChhhhhhhhccccCCCCCCCC
Q 042735 551 ---SSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPR-GFVSSILPSPSVINMRLDEMLDPRLPPPS 620 (667)
Q Consensus 551 ---~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (667)
........||+.|+||| ++.++|||||||++|||+||+.|+ ..... .... ...........+...
T Consensus 179 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~ 253 (298)
T 3pls_A 179 YYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDP----FDLT-HFLAQGRRLPQPEYC 253 (298)
T ss_dssp GGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCG----GGHH-HHHHTTCCCCCCTTC
T ss_pred ccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCH----HHHH-HHhhcCCCCCCCccc
Confidence 11223457899999999 567899999999999999966653 32111 1111 111111111111111
Q ss_pred CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 621 ~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
+ ..+.+++.+||+.+|++|||++|+++.+......+.
T Consensus 254 ~------~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~ 290 (298)
T 3pls_A 254 P------DSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALL 290 (298)
T ss_dssp C------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCC
T ss_pred h------HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHh
Confidence 1 246678889999999999999999999987765543
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 | Back alignment and structure |
|---|
Probab=99.98 E-value=8.2e-33 Score=306.01 Aligned_cols=221 Identities=23% Similarity=0.411 Sum_probs=168.8
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|...+.||+|+||.||+|.+.++..||||++..... ..+.|.+|+++|++++|||||+++|++.+ +..++||
T Consensus 267 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~ 340 (535)
T 2h8h_A 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-----SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVT 340 (535)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-----CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEE
T ss_pred hhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-----CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEee
Confidence 56788889999999999999998888899999875321 23579999999999999999999999876 6789999
Q ss_pred EecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC-C
Q 042735 501 EYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-N 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~ 553 (667)
||+++|+|.+++.... ...|.||||+|||++.++.+||+|||+++....... .
T Consensus 341 e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~ 420 (535)
T 2h8h_A 341 EYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 420 (535)
T ss_dssp CCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHT
T ss_pred ehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCceec
Confidence 9999999998886321 112449999999999999999999999987543210 1
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....||..|+||| |+.++|||||||++|||+| |+.||..... ...... +........+...
T Consensus 421 ~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~----~~~~~~-i~~~~~~~~~~~~------ 489 (535)
T 2h8h_A 421 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN----REVLDQ-VERGYRMPCPPEC------ 489 (535)
T ss_dssp TCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCH----HHHHHH-HHTTCCCCCCTTC------
T ss_pred ccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH----HHHHHH-HHcCCCCCCCCCC------
Confidence 12345778999999 6789999999999999999 8999753221 111111 1111111112111
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
...+.+++.+||+.+|++|||+++|++.|...
T Consensus 490 ~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~ 521 (535)
T 2h8h_A 490 PESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 521 (535)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 22466788899999999999999999988764
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-33 Score=288.35 Aligned_cols=227 Identities=22% Similarity=0.371 Sum_probs=166.0
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
+.|+..+.||+|+||.||+|... ++..+|+|++..... ...+.+.+|++++++++||||+++++++...+..++|
T Consensus 19 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~----~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 94 (302)
T 2j7t_A 19 EVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSE----EELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIM 94 (302)
T ss_dssp GTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC--------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEE
T ss_pred cceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCH----HHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEE
Confidence 57888999999999999999875 578899998864321 2346789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||+++|+|.+.+.... ...|.||||+||+++.++.+||+|||++..........
T Consensus 95 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~ 174 (302)
T 2j7t_A 95 IEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKR 174 (302)
T ss_dssp EECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC-
T ss_pred EEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCcccccccccc
Confidence 99999999987764311 12244999999999999999999999986432211122
Q ss_pred ccccccccccCCC-----------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 555 SALVGTYRYVAPD-----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 555 ~~~~Gt~~y~aPE-----------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
....||+.|+||| ++.++|||||||++|||+||+.|+...... .... .......+....+
T Consensus 175 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~----~~~~-~~~~~~~~~~~~~---- 245 (302)
T 2j7t_A 175 DSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPM----RVLL-KIAKSDPPTLLTP---- 245 (302)
T ss_dssp ----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHH----HHHH-HHHHSCCCCCSSG----
T ss_pred ccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHH----HHHH-HHhccCCcccCCc----
Confidence 3457999999999 356899999999999999999998643211 0100 0101111111110
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
......+.+++.+||+.||++|||++|++++.|+...
T Consensus 246 ~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~ 282 (302)
T 2j7t_A 246 SKWSVEFRDFLKIALDKNPETRPSAAQLLEHPFVSSI 282 (302)
T ss_dssp GGSCHHHHHHHHHHSCSCTTTSCCHHHHTTSTTTTTC
T ss_pred cccCHHHHHHHHHHcccChhhCCCHHHHhcChHHhhh
Confidence 1112356778889999999999999999999888654
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-32 Score=278.81 Aligned_cols=223 Identities=25% Similarity=0.426 Sum_probs=171.5
Q ss_pred HcCCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|...+.||+|+||.||+|.... +..+|||++.... ...+.+.+|++++++++||||+++++++.+.+..++
T Consensus 12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-----~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 86 (288)
T 3kfa_A 12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-----MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYI 86 (288)
T ss_dssp GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-----THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEE
T ss_pred ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-----HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEE
Confidence 4678888999999999999998754 7789999986432 234679999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 499 IYEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
||||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++.......
T Consensus 87 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~ 166 (288)
T 3kfa_A 87 ITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY 166 (288)
T ss_dssp EEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSS
T ss_pred EEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCccceeccCCcc
Confidence 9999999999988754211 12349999999999999999999999987654332
Q ss_pred -CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchH
Q 042735 553 -NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624 (667)
Q Consensus 553 -~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (667)
......||+.|+||| ++.++|||||||++|||+| |+.||..... .... ...........+...+
T Consensus 167 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~----~~~~-~~~~~~~~~~~~~~~~--- 238 (288)
T 3kfa_A 167 TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL----SQVY-ELLEKDYRMERPEGCP--- 238 (288)
T ss_dssp EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG----GGHH-HHHHTTCCCCCCTTCC---
T ss_pred ccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH----HHHH-HHHhccCCCCCCCCCC---
Confidence 123346788999999 5779999999999999999 9999763321 1111 1111111222222221
Q ss_pred HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
..+.+++.+||+.||++|||++|+++.+...
T Consensus 239 ---~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~ 269 (288)
T 3kfa_A 239 ---EKVYELMRACWQWNPSDRPSFAEIHQAFETM 269 (288)
T ss_dssp ---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhCCChhhCcCHHHHHHHHHHH
Confidence 2466788899999999999999999987654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-31 Score=274.20 Aligned_cols=288 Identities=20% Similarity=0.262 Sum_probs=236.2
Q ss_pred CCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcc
Q 042735 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALE 82 (667)
Q Consensus 4 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~ 82 (667)
+++.++++++.++. +|..+ .++|++|+|++|++++..+..|+++++|++|+|++|++++..|..+.. .+|++|+|+
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 68889999999886 45544 378999999999999877778999999999999999998877888877 569999999
Q ss_pred cccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCcccc--ccchhhhcCCCCCEEECcCCccCC
Q 042735 83 NNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRG--TISEAFGIYLNLTFLDISDNNFFG 160 (667)
Q Consensus 83 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~ 160 (667)
+|.++ .+|..+. .+|+.|++++|.+++..+..+.++++|+.|++++|.++. ..+..+..+++|++|++++|.+..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99987 4454443 689999999999988777778899999999999998853 667788899999999999998864
Q ss_pred ccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccC
Q 042735 161 EIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240 (667)
Q Consensus 161 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 240 (667)
+|..+. ++|+.|++++|.+++..|..+.++++|+.|+|++|.+.+..+..|..+++|+.|++++|.+. .+|..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 555443 78999999999998877888999999999999999998877778888999999999999887 67888888
Q ss_pred CCCCCeeeccCCcCCccchhhhhc------ccCCCeecCCCccCcc--ccchhhhcCCCCCEEECcCCC
Q 042735 241 LTKLEFLNLSTNRFSSLIPESLGN------LLKLHYLDLSKYQFIQ--ELPKELGKLVQLSELELSHNF 301 (667)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~ls~n~~~~--~~p~~l~~l~~L~~L~l~~n~ 301 (667)
+++|++|++++|++++..+..|.. ...|+.+++++|.+.. ..|..+..+.+++.+++++|+
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 999999999999998876666653 3678888898888643 456778888888889888874
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-33 Score=290.42 Aligned_cols=228 Identities=24% Similarity=0.381 Sum_probs=165.8
Q ss_pred HHHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEe---
Q 042735 418 RAINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSH--- 492 (667)
Q Consensus 418 ~~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~--- 492 (667)
...++|+..+.||+|+||.||+|+. .+++.||||++..... ..+.+.+|+++++++ +||||+++++++..
T Consensus 21 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~ 95 (326)
T 2x7f_A 21 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-----EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNP 95 (326)
T ss_dssp CCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-----TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC-
T ss_pred CCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-----cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccC
Confidence 3457888999999999999999987 5688999998864321 234688999999999 79999999999987
Q ss_pred ---CCceEEEEEecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccc
Q 042735 493 ---ARHSILIYEYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGI 543 (667)
Q Consensus 493 ---~~~~~lv~ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGl 543 (667)
.+..++||||+++|+|.+++.... ...|.||||+||+++.++.+||+|||+
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~ 175 (326)
T 2x7f_A 96 PGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGV 175 (326)
T ss_dssp -CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCTT
T ss_pred ccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCEEEeeCcC
Confidence 467899999999999998875421 112349999999999999999999999
Q ss_pred cccccCCCCCcccccccccccCCC-----------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhcccc
Q 042735 544 AKFLKPDSSNWSALVGTYRYVAPD-----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612 (667)
Q Consensus 544 a~~~~~~~~~~~~~~Gt~~y~aPE-----------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~ 612 (667)
++.............||+.|+||| ++.++|||||||++|||+||+.||...... .... ......
T Consensus 176 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~----~~~~-~~~~~~ 250 (326)
T 2x7f_A 176 SAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPM----RALF-LIPRNP 250 (326)
T ss_dssp TC-------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHH----HHHH-HHHHSC
T ss_pred ceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHH----HHHH-HhhcCc
Confidence 987654333334567999999998 356899999999999999999998532211 0000 011111
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 613 DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.+.... ... ...+.+++.+||+.||++|||++|++++.|+...
T Consensus 251 ~~~~~~--~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~hp~~~~~ 293 (326)
T 2x7f_A 251 APRLKS--KKW---SKKFQSFIESCLVKNHSQRPATEQLMKHPFIRDQ 293 (326)
T ss_dssp CCCCSC--SCS---CHHHHHHHHHHCCSSGGGSCCHHHHHTSHHHHCC
T ss_pred cccCCc--ccc---CHHHHHHHHHHhccChhhCCCHHHHhhChHHhhC
Confidence 111111 111 1246678889999999999999999999988643
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-32 Score=280.05 Aligned_cols=220 Identities=20% Similarity=0.334 Sum_probs=166.8
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~ 497 (667)
.++|+..+.||+|+||.||+|... +++.||||++....... .....+.+|+..+.++ +|||||++++++.+.+..+
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~ 87 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGS--VDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHML 87 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTS--HHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEE
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEeccccccc--HHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEE
Confidence 467899999999999999999875 68899999987543322 3356788999999999 8999999999999999999
Q ss_pred EEEEecCCCChHHHhcccc----------------------------CCcccccccCCeeecCC----------------
Q 042735 498 LIYEYLKRGSLATNLSNDA----------------------------AAEELDISSKNVLLDLE---------------- 533 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~----------------------------~~~~~dlk~~NiLld~~---------------- 533 (667)
+||||+++|+|.+++.... ...|.||||+||+++.+
T Consensus 88 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~ 167 (289)
T 1x8b_A 88 IQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWA 167 (289)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC------------------
T ss_pred EEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCccccccccccccc
Confidence 9999999999998875421 01234999999999844
Q ss_pred ---CceEEecccccccccCCCCCcccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhh
Q 042735 534 ---HKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV 603 (667)
Q Consensus 534 ---~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~ 603 (667)
..+||+|||.++...... ...||+.|+|||. +.++|||||||++|||++|++|+.... .
T Consensus 168 ~~~~~~kl~Dfg~~~~~~~~~----~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~-------~ 236 (289)
T 1x8b_A 168 SNKVMFKIGDLGHVTRISSPQ----VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGD-------Q 236 (289)
T ss_dssp --CCCEEECCCTTCEETTCSC----CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSH-------H
T ss_pred CCceEEEEcccccccccCCcc----ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchh-------H
Confidence 479999999998765332 3469999999992 348999999999999999998753211 0
Q ss_pred hhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 604 INMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
... ......+..+...+ ..+.+++.+||+.||++|||+.|++++.|+..
T Consensus 237 ~~~-~~~~~~~~~~~~~~------~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~ 285 (289)
T 1x8b_A 237 WHE-IRQGRLPRIPQVLS------QEFTELLKVMIHPDPERRPSAMALVKHSVLLS 285 (289)
T ss_dssp HHH-HHTTCCCCCSSCCC------HHHHHHHHHHTCSSGGGSCCHHHHHTCTTC--
T ss_pred HHH-HHcCCCCCCCcccC------HHHHHHHHHHhCCCcccCCCHHHHhhChHhhh
Confidence 111 11111122222222 24667888999999999999999999988764
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=4.6e-32 Score=275.01 Aligned_cols=221 Identities=23% Similarity=0.400 Sum_probs=168.0
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|...+.||+|+||.||+|...++..+|||++..... ..+.|.+|++++++++||||+++++++. .+..++||
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-----~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~ 86 (279)
T 1qpc_A 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-----SPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIIT 86 (279)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-----CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-----cHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEE
Confidence 57888899999999999999998888899999865321 2457899999999999999999999986 45689999
Q ss_pred EecCCCChHHHhcccc---C-----------------------CcccccccCCeeecCCCceEEecccccccccCCCC-C
Q 042735 501 EYLKRGSLATNLSNDA---A-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-N 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~---~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~ 553 (667)
||+++|+|.+++.... . ..|.||||+||+++.++.+||+|||+++....... .
T Consensus 87 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~ 166 (279)
T 1qpc_A 87 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTA 166 (279)
T ss_dssp ECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEEC
T ss_pred ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCcccccccCccccc
Confidence 9999999998876421 1 12349999999999999999999999987654321 1
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....||+.|+||| ++.++|||||||++|||+| |+.||..... ..... ..........+...
T Consensus 167 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~----~~~~~-~~~~~~~~~~~~~~------ 235 (279)
T 1qpc_A 167 REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN----PEVIQ-NLERGYRMVRPDNC------ 235 (279)
T ss_dssp CTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH----HHHHH-HHHTTCCCCCCTTC------
T ss_pred ccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCH----HHHHH-HHhcccCCCCcccc------
Confidence 22345788999999 5778999999999999999 8999753221 11111 11111111112111
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
...+.+++.+||+.+|++|||+.++++.+...
T Consensus 236 ~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 267 (279)
T 1qpc_A 236 PEELYQLMRLCWKERPEDRPTFDYLRSVLEDF 267 (279)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhccChhhCCCHHHHHHHHHHH
Confidence 12466788899999999999999999987654
|
| >2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-32 Score=290.47 Aligned_cols=235 Identities=20% Similarity=0.307 Sum_probs=161.7
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC-----
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR----- 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~----- 494 (667)
++|...+.||+|+||.||+|.. .+++.||||++..... .....+.+.+|+.++++++|||||++++++...+
T Consensus 25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 102 (371)
T 2xrw_A 25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ--NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF 102 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTS--SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTC
T ss_pred hheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccC--ChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccc
Confidence 5788999999999999999976 4678899999865432 2234567899999999999999999999997665
Q ss_pred -ceEEEEEecCCCChHHHhccc----------------------cCCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 495 -HSILIYEYLKRGSLATNLSND----------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 495 -~~~lv~ey~~~g~L~~~l~~~----------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
..++||||+++ +|.+.+... ....|.||||+|||++.++.+||+|||+++......
T Consensus 103 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~ 181 (371)
T 2xrw_A 103 QDVYIVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF 181 (371)
T ss_dssp CEEEEEEECCSE-EHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC--------
T ss_pred cceEEEEEcCCC-CHHHHHhhccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEEEeeccccccccc
Confidence 67999999985 676655321 112345999999999999999999999998654322
Q ss_pred CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC-----------CChhhhhh---hhccc
Q 042735 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL-----------PSPSVINM---RLDEM 611 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~-----------~~~~~~~~---~~~~~ 611 (667)
..+..+||+.|+||| |+.++|||||||++|||+||+.||....... +.+..... .....
T Consensus 182 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 260 (371)
T 2xrw_A 182 -MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTY 260 (371)
T ss_dssp ---------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHHH
T ss_pred -ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHH
Confidence 234568999999999 6889999999999999999999986432110 00000000 00000
Q ss_pred --cCCCC--------------CCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 612 --LDPRL--------------PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 612 --~~~~~--------------~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
-.+.. +............+.+++.+||+.||++|||++|++++.|+..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~ 324 (371)
T 2xrw_A 261 VENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV 324 (371)
T ss_dssp HHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHT
T ss_pred HhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCcchhh
Confidence 00000 0000011122346788999999999999999999999999864
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-32 Score=283.49 Aligned_cols=226 Identities=24% Similarity=0.398 Sum_probs=166.9
Q ss_pred cCCcCcceeecccCeEEEEEEe------CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~------~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
++|...+.||+|+||.||+|+. .++..||||++.... .......+.+|+.++++++||||+++++++.+..
T Consensus 30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 106 (327)
T 2yfx_A 30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC---SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL 106 (327)
T ss_dssp GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEecccc---chhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCC
Confidence 5788899999999999999974 346689999986432 2234567999999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhccccC-------------------------------CcccccccCCeeecC---CCceEEec
Q 042735 495 HSILIYEYLKRGSLATNLSNDAA-------------------------------AEELDISSKNVLLDL---EHKAHVSD 540 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~~-------------------------------~~~~dlk~~NiLld~---~~~~kl~D 540 (667)
..++||||+++|+|.+++..... ..|.||||+||+++. +..+||+|
T Consensus 107 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~D 186 (327)
T 2yfx_A 107 PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGD 186 (327)
T ss_dssp SCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECC
T ss_pred CcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceEEECc
Confidence 99999999999999998864321 113399999999994 44699999
Q ss_pred ccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccc
Q 042735 541 FGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEM 611 (667)
Q Consensus 541 FGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~ 611 (667)
||+++....... ......||+.|+||| |+.++|||||||++|||+| |+.||..... ...... ....
T Consensus 187 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~----~~~~~~-~~~~ 261 (327)
T 2yfx_A 187 FGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN----QEVLEF-VTSG 261 (327)
T ss_dssp CHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH----HHHHHH-HHTT
T ss_pred cccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCH----HHHHHH-HhcC
Confidence 999986543221 223456899999999 5789999999999999999 9999753221 111111 1111
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 612 LDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..+..+...+ ..+.+++.+||+.+|++|||+.|+++++++...
T Consensus 262 ~~~~~~~~~~------~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~ 304 (327)
T 2yfx_A 262 GRMDPPKNCP------GPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQ 304 (327)
T ss_dssp CCCCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCC------HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhc
Confidence 1111111111 246678889999999999999999999998754
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=4.9e-32 Score=277.61 Aligned_cols=229 Identities=24% Similarity=0.388 Sum_probs=165.5
Q ss_pred cCCcCcceeecccCeEEEEEEeCCC----ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe-CCc
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSK----EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH-ARH 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~----~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~-~~~ 495 (667)
..|...+.||+|+||.||+|....+ ..+|||.+.... .....+.+.+|+.++++++|||||++++++.+ .+.
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 101 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT---DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGS 101 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCC---SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSC
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCC---CHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCc
Confidence 4577788999999999999986432 358999886532 23345679999999999999999999999754 567
Q ss_pred eEEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCC
Q 042735 496 SILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
.++||||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++.....
T Consensus 102 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~ 181 (298)
T 3f66_A 102 PLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 181 (298)
T ss_dssp CEEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCG
T ss_pred eEEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEECccccccccccc
Confidence 8999999999999998854221 123499999999999999999999999865432
Q ss_pred C----CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhC-CCCCCCCccCCCChhhhhhhhccccCCCCCCC
Q 042735 551 S----SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKG-KHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619 (667)
Q Consensus 551 ~----~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (667)
. .......||+.|+||| ++.++|||||||++|||+|| .+|+...... ..... .........+..
T Consensus 182 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~ 256 (298)
T 3f66_A 182 EYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF----DITVY-LLQGRRLLQPEY 256 (298)
T ss_dssp GGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTT----THHHH-HHTTCCCCCCTT
T ss_pred chhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHH----HHHHH-HhcCCCCCCCcc
Confidence 1 1223456888999999 57799999999999999995 4554422211 11111 111111111111
Q ss_pred CCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 620 ~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
.+ ..+.+++.+||+.+|++|||++|+++.|......+.
T Consensus 257 ~~------~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~ 294 (298)
T 3f66_A 257 CP------DPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFI 294 (298)
T ss_dssp CC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSC
T ss_pred CC------HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhc
Confidence 11 246678889999999999999999999988765543
|
| >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-32 Score=283.29 Aligned_cols=239 Identities=22% Similarity=0.308 Sum_probs=164.9
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCC-chHHhHHHHHHHHHHHHhcC---CCCeeEEEEEEEeCC
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPS-DQIADQKEFFAEIEALTKIR---HRNIVKFYGFCSHAR 494 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~-~~~~~~~~~~~E~~~l~~l~---H~niv~~~g~~~~~~ 494 (667)
.++|+..+.||+|+||.||+|+. .+++.||||++...... ........+.+|++++++++ |||||++++++....
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~ 87 (308)
T 3g33_A 8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSR 87 (308)
T ss_dssp --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECC
T ss_pred ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccC
Confidence 56899999999999999999986 56889999987532211 01111235667777776665 999999999998765
Q ss_pred -----ceEEEEEecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCceEEecccc
Q 042735 495 -----HSILIYEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHKAHVSDFGI 543 (667)
Q Consensus 495 -----~~~lv~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~~kl~DFGl 543 (667)
..++||||+. |+|.+++..... ..|.||||+||+++.++.+||+|||+
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~ 166 (308)
T 3g33_A 88 TDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGL 166 (308)
T ss_dssp SSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTSCEEECSCSC
T ss_pred CCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEEeeCcc
Confidence 4799999998 599887754321 12349999999999999999999999
Q ss_pred cccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhh----------
Q 042735 544 AKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMR---------- 607 (667)
Q Consensus 544 a~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~---------- 607 (667)
++...... ..+..+||+.|+||| |+.++|||||||++|||+||+.||...........+....
T Consensus 167 a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~ 245 (308)
T 3g33_A 167 ARIYSYQM-ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPR 245 (308)
T ss_dssp TTTSTTCC-CSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCTTTSCS
T ss_pred ccccCCCc-ccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccc
Confidence 98765332 234578999999999 6889999999999999999999985322110000000000
Q ss_pred ----hccccCCCCCCCCCc-hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 608 ----LDEMLDPRLPPPSPD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 608 ----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
....+.+..+.+... .......+.+++.+||+.||++|||++|++++.|+...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h~~~~~~ 303 (308)
T 3g33_A 246 DVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHKD 303 (308)
T ss_dssp SCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTC---
T ss_pred hhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcCccccCC
Confidence 000000000000000 00112356788889999999999999999999988654
|
| >1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-32 Score=290.65 Aligned_cols=233 Identities=19% Similarity=0.266 Sum_probs=164.7
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC-----
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR----- 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~----- 494 (667)
++|...+.||+|+||.||+|.. .+++.||||++..... .....+.+.+|++++++++|||||++++++....
T Consensus 25 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 102 (367)
T 1cm8_A 25 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ--SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF 102 (367)
T ss_dssp SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTS--SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred ceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCcccc--CHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence 5688889999999999999986 5688999999865432 2334567899999999999999999999997653
Q ss_pred -ceEEEEEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCC
Q 042735 495 -HSILIYEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 495 -~~~lv~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
..++||||+ +++|.+.+..... ..|.||||+|||++.++.+||+|||+++.....
T Consensus 103 ~~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 181 (367)
T 1cm8_A 103 TDFYLVMPFM-GTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSE 181 (367)
T ss_dssp CCCEEEEECC-SEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSS
T ss_pred ceEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEEEeeecccccccc
Confidence 459999999 7899887754321 124499999999999999999999999875432
Q ss_pred CCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh----------h-------
Q 042735 551 SSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN----------M------- 606 (667)
Q Consensus 551 ~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~----------~------- 606 (667)
.+..+||+.|+||| |+.++||||+||++|||+||+.||...........+.. .
T Consensus 182 ---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~ 258 (367)
T 1cm8_A 182 ---MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEA 258 (367)
T ss_dssp ---CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHH
T ss_pred ---cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHHH
Confidence 34568999999998 57899999999999999999999864321100000000 0
Q ss_pred -hhccccCCCCCCCC-C-chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 607 -RLDEMLDPRLPPPS-P-DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 607 -~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.....+ +..+... . ........+.+++.+||+.||++|||++|++++.||...
T Consensus 259 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~hp~f~~~ 314 (367)
T 1cm8_A 259 KNYMKGL-PELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESL 314 (367)
T ss_dssp HHHHHHS-CCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTT
T ss_pred HHHHHhC-CCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcChHHHhh
Confidence 000000 0000000 0 000112346788889999999999999999999998754
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=7.7e-33 Score=286.95 Aligned_cols=232 Identities=21% Similarity=0.264 Sum_probs=166.4
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCC----chHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPS----DQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~----~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
.++|...+.||+|+||.||+|... +++.||||.+...... ........+.+|++++++++||||+++++++....
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 88 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED 88 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence 367889999999999999999864 5788999998653211 11122345889999999999999999999987654
Q ss_pred ceEEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCc---eEEecccccccc
Q 042735 495 HSILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHK---AHVSDFGIAKFL 547 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~---~kl~DFGla~~~ 547 (667)
.++||||+++|+|.+.+..... ..|.||||+||+++.++. +||+|||+++..
T Consensus 89 -~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~ 167 (322)
T 2ycf_A 89 -YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL 167 (322)
T ss_dssp -EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTTCEEC
T ss_pred -eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCccceec
Confidence 8999999999999887754321 123499999999987664 999999999876
Q ss_pred cCCCCCcccccccccccCCC---------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCC
Q 042735 548 KPDSSNWSALVGTYRYVAPD---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618 (667)
Q Consensus 548 ~~~~~~~~~~~Gt~~y~aPE---------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (667)
.... ......||+.|+||| |+.++|||||||++|||+||+.||........ ........ ....
T Consensus 168 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~---~~~~~~~~----~~~~ 239 (322)
T 2ycf_A 168 GETS-LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS---LKDQITSG----KYNF 239 (322)
T ss_dssp CCCH-HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSC---HHHHHHHT----CCCC
T ss_pred cccc-ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHH---HHHHHHhC----cccc
Confidence 4321 223467999999999 35689999999999999999999864322111 11100000 1110
Q ss_pred CCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
...........+.+++.+||+.||++|||++|++++.|+...
T Consensus 240 ~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h~~~~~~ 281 (322)
T 2ycf_A 240 IPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDE 281 (322)
T ss_dssp CHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGCCH
T ss_pred CchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhhCcCcCCH
Confidence 000001112356788889999999999999999999887643
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.98 E-value=9.3e-31 Score=274.24 Aligned_cols=282 Identities=26% Similarity=0.360 Sum_probs=243.1
Q ss_pred CCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEc
Q 042735 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLAL 81 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L 81 (667)
+++|+.|++++|.++++.+ +.++++|++|+|++|.+.. + ..+.++++|++|++++|.+.+. |.......|+.|++
T Consensus 65 ~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l 139 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SPLANLTKMYSLNL 139 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GGGTTCTTCCEEEC
T ss_pred cCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hhhccCCceeEEEC
Confidence 6799999999999987644 8899999999999999985 3 4699999999999999999854 44323367999999
Q ss_pred ccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCc
Q 042735 82 ENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGE 161 (667)
Q Consensus 82 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 161 (667)
++|.....++ .+..+.+|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 140 ~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 140 GANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp TTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCC
Confidence 9997655544 48889999999999999986644 8899999999999999986544 88999999999999998765
Q ss_pred cCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCC
Q 042735 162 IASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSL 241 (667)
Q Consensus 162 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 241 (667)
.+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+. +.+..+++|+.|++++|.+.+. ..+..+
T Consensus 215 ~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l 286 (347)
T 4fmz_A 215 TP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNL 286 (347)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred ch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCC
Confidence 44 8889999999999999986544 88999999999999998763 5689999999999999999764 468899
Q ss_pred CCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCC
Q 042735 242 TKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLG 303 (667)
Q Consensus 242 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 303 (667)
++|+.|++++|.+++..|..+..+++|+.|++++|++.+..| +..+++|++|++++|.++
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999999999999999999999999999999999877666 889999999999999874
|
| >4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-32 Score=307.64 Aligned_cols=218 Identities=26% Similarity=0.396 Sum_probs=160.5
Q ss_pred ceeecccCeEEEEEEeC---CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEec
Q 042735 427 YCIGSGRHGSVYRAELP---SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYL 503 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~---~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~ 503 (667)
+.||+|+||.||+|.+. .+..||||+++.... .....++|.+|++++++++|||||+++|++.. +..++||||+
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~--~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~ 451 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN--DPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMA 451 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGG--CGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECC
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEcc
Confidence 47999999999999653 456899999865321 22335679999999999999999999999964 5688999999
Q ss_pred CCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC---Cccc
Q 042735 504 KRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS---NWSA 556 (667)
Q Consensus 504 ~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~---~~~~ 556 (667)
++|+|.+++.... ...|.||||+|||++.++.+||+|||+++....... ..+.
T Consensus 452 ~~g~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~ 531 (635)
T 4fl3_A 452 ELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTH 531 (635)
T ss_dssp TTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC----------
T ss_pred CCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccC
Confidence 9999998875432 122459999999999999999999999987654332 1233
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
..||+.|+||| |+.++|||||||++|||+| |+.||..... ..... .+........+...+ ..
T Consensus 532 ~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~----~~~~~-~i~~~~~~~~p~~~~------~~ 600 (635)
T 4fl3_A 532 GKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG----SEVTA-MLEKGERMGCPAGCP------RE 600 (635)
T ss_dssp ---CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH----HHHHH-HHHTTCCCCCCTTCC------HH
T ss_pred CCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH----HHHHH-HHHcCCCCCCCCCCC------HH
Confidence 45788999999 6789999999999999999 9999864321 11111 111111122222222 25
Q ss_pred HHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 630 IMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
+.+++.+||+.||++|||+++|++.|...
T Consensus 601 l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 629 (635)
T 4fl3_A 601 MYDLMNLCWTYDVENRPGFAAVELRLRNY 629 (635)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 67788899999999999999999988754
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=9e-32 Score=300.06 Aligned_cols=309 Identities=23% Similarity=0.261 Sum_probs=210.2
Q ss_pred CCCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccce-eCCCCCcc-cccCE
Q 042735 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSG-SIPPSVGN-LMLTV 78 (667)
Q Consensus 1 ~L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~-~~L~~ 78 (667)
++++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|.+++ ..|..++. .+|++
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 46789999999999998888888899999999999999987777778899999999999998875 34556665 45888
Q ss_pred EEcccccccccCC-ccccCCCCccEEEeeCcccccccCccCCC------------------------CCCCcEEEccCCc
Q 042735 79 LALENNHFTGNLR-HNICRNGALERVIVGGNHFRGPIPKCLRN------------------------CPNLVRISLEGNN 133 (667)
Q Consensus 79 L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~p~~l~~------------------------l~~L~~L~L~~n~ 133 (667)
|+|++|.+.+.++ ..+..+++|+.|++++|.+++..|..+.+ +++|+.|++++|+
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence 8888887444443 56777777777777777777666655543 4455555555555
Q ss_pred cccc----------------------------------------------------------------------------
Q 042735 134 MRGT---------------------------------------------------------------------------- 137 (667)
Q Consensus 134 ~~~~---------------------------------------------------------------------------- 137 (667)
+++.
T Consensus 208 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 287 (549)
T 2z81_A 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287 (549)
T ss_dssp CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEE
T ss_pred cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccc
Confidence 5432
Q ss_pred -------------------------------------cchhh-hcCCCCCEEECcCCccCCccC---ccCCCCCCCCEEE
Q 042735 138 -------------------------------------ISEAF-GIYLNLTFLDISDNNFFGEIA---SNWGKCPKLSTLN 176 (667)
Q Consensus 138 -------------------------------------~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~ 176 (667)
+|..+ ..+++|++|++++|.+.+..| ..+..+++|+.|+
T Consensus 288 l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~ 367 (549)
T 2z81_A 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367 (549)
T ss_dssp EESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE
T ss_pred ccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEE
Confidence 11111 346666666666666665543 2355666677777
Q ss_pred ccCCcCCCCcC--ccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcC
Q 042735 177 VSMNNITRSIP--LEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRF 254 (667)
Q Consensus 177 L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 254 (667)
+++|.+++..+ ..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.. +|..+ .++|++|+|++|++
T Consensus 368 Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l 443 (549)
T 2z81_A 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNL 443 (549)
T ss_dssp CTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCC
T ss_pred ccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCCh
Confidence 77776654322 34666677777777777666 456666666777777777776652 33322 24566666666666
Q ss_pred CccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCcCcccccCCcccccc
Q 042735 255 SSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEVF 319 (667)
Q Consensus 255 ~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~~~~ 319 (667)
++.+ ..+++|+.|++++|++. .+|. ...+++|++|++++|.+.+..|..+..+..+..+
T Consensus 444 ~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 502 (549)
T 2z81_A 444 DSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502 (549)
T ss_dssp SCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEE
T ss_pred hhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEE
Confidence 5532 36778888888888865 6776 4678888888888888887777666655554443
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.6e-32 Score=277.62 Aligned_cols=224 Identities=25% Similarity=0.370 Sum_probs=164.4
Q ss_pred cCCcCcc-eeecccCeEEEEEEe---CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKY-CIGSGRHGSVYRAEL---PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~-~lg~g~~g~vy~~~~---~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
++|.... .||+|+||.||+|.+ ..+..+|||++..... .....+.+.+|++++++++||||+++++++ ..+..
T Consensus 16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~ 92 (291)
T 1xbb_A 16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN--DPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESW 92 (291)
T ss_dssp GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-------CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSE
T ss_pred hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeeccccc--CHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCc
Confidence 4566666 899999999999964 3357899999865422 123356799999999999999999999999 66778
Q ss_pred EEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
++||||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++.......
T Consensus 93 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 172 (291)
T 1xbb_A 93 MLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN 172 (291)
T ss_dssp EEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCS
T ss_pred EEEEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCC
Confidence 999999999999988754321 12349999999999999999999999987654332
Q ss_pred C---cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCc
Q 042735 553 N---WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622 (667)
Q Consensus 553 ~---~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (667)
. .....||+.|+||| ++.++|||||||++|||+| |+.||..... ......+.....+..+...
T Consensus 173 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~-- 245 (291)
T 1xbb_A 173 YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG-----SEVTAMLEKGERMGCPAGC-- 245 (291)
T ss_dssp EEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCH-----HHHHHHHHTTCCCCCCTTC--
T ss_pred cccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCH-----HHHHHHHHcCCCCCCCCCC--
Confidence 1 12345678999999 4678999999999999999 9999864321 1111111111112222212
Q ss_pred hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 623 VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 623 ~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
...+.+++.+||+.||++|||+.|+++.|...
T Consensus 246 ----~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 277 (291)
T 1xbb_A 246 ----PREMYDLMNLCWTYDVENRPGFAAVELRLRNY 277 (291)
T ss_dssp ----CHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 12466788899999999999999999887654
|
| >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=7.4e-33 Score=287.66 Aligned_cols=232 Identities=17% Similarity=0.238 Sum_probs=169.2
Q ss_pred cCCcCc-ceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceE
Q 042735 421 NDFDAK-YCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 421 ~~f~~~-~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~ 497 (667)
+.|... +.||+|+||.||+|... +++.||||++....... .....+.+|+.++.+++ ||||+++++++.+.+..+
T Consensus 28 ~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~ 105 (327)
T 3lm5_A 28 NFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQ--DCRAEILHEIAVLELAKSCPRVINLHEVYENTSEII 105 (327)
T ss_dssp HHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTE--ECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred hEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcch--HHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEE
Confidence 345555 78999999999999865 58899999886543222 23457899999999996 699999999999999999
Q ss_pred EEEEecCCCChHHHhcccc--------------------------CCcccccccCCeeecC---CCceEEeccccccccc
Q 042735 498 LIYEYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDL---EHKAHVSDFGIAKFLK 548 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~---~~~~kl~DFGla~~~~ 548 (667)
+||||+++|+|.+.+.... ...|.||||+||+++. ++.+||+|||+++...
T Consensus 106 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~ 185 (327)
T 3lm5_A 106 LILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIG 185 (327)
T ss_dssp EEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC-
T ss_pred EEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCccccccC
Confidence 9999999999988875321 0113499999999997 7899999999998765
Q ss_pred CCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCc
Q 042735 549 PDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622 (667)
Q Consensus 549 ~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (667)
.... .....||+.|+||| |+.++|||||||++|||+||+.||...... .... ..... ....+...
T Consensus 186 ~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~----~~~~-~i~~~-~~~~~~~~-- 256 (327)
T 3lm5_A 186 HACE-LREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQ----ETYL-NISQV-NVDYSEET-- 256 (327)
T ss_dssp ---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH----HHHH-HHHHT-CCCCCTTT--
T ss_pred Cccc-cccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCch----HHHH-HHHhc-ccccCchh--
Confidence 4322 33467999999999 577999999999999999999998532210 1100 11111 11111110
Q ss_pred hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 623 VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 623 ~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
.......+.+++.+||+.||++|||++|++++.|+....|.
T Consensus 257 ~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h~~~~~~~~~ 297 (327)
T 3lm5_A 257 FSSVSQLATDFIQSLLVKNPEKRPTAEICLSHSWLQQWDFE 297 (327)
T ss_dssp TTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTCGGGCCCCTT
T ss_pred hcccCHHHHHHHHHHcCCChhhCcCHHHHhCCHhhcccccc
Confidence 01112246678889999999999999999999999766543
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-32 Score=279.01 Aligned_cols=229 Identities=21% Similarity=0.345 Sum_probs=157.8
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|+. .+++.||||++..... .....+.+.++...++.++||||+++++++.+++..++
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~l 83 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVN--SQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWI 83 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---C--HHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccC--cHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEE
Confidence 36788999999999999999986 5688899999865432 22223344555566888999999999999999999999
Q ss_pred EEEecCCCChHHHhcc----------------------------cc-CCcccccccCCeeecCCCceEEecccccccccC
Q 042735 499 IYEYLKRGSLATNLSN----------------------------DA-AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~----------------------------~~-~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~ 549 (667)
||||+++ +|.+.+.. .. ...|.||||+||+++.++.+||+|||+++....
T Consensus 84 v~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 162 (290)
T 3fme_A 84 CMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVD 162 (290)
T ss_dssp EEECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC--------
T ss_pred EEehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecCCcccccc
Confidence 9999984 76554421 01 233559999999999999999999999987654
Q ss_pred CCCCcccccccccccCCCC----------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCC
Q 042735 550 DSSNWSALVGTYRYVAPDY----------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE~----------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (667)
... .....||+.|+|||. +.++|||||||++|||+||+.||..... ........... ..+..+.
T Consensus 163 ~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~---~~~~~~~~~~~-~~~~~~~- 236 (290)
T 3fme_A 163 DVA-KDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGT---PFQQLKQVVEE-PSPQLPA- 236 (290)
T ss_dssp --------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSC---HHHHHHHHHHS-CCCCCCT-
T ss_pred ccc-ccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCc---hHHHHHHHhcc-CCCCccc-
Confidence 322 234579999999993 4578999999999999999999853211 00111111111 1111111
Q ss_pred CCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 620 ~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.. ....+.+++.+||+.+|++|||++|++++.||....
T Consensus 237 -~~---~~~~~~~li~~~l~~~p~~Rpt~~e~l~hp~f~~~~ 274 (290)
T 3fme_A 237 -DK---FSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTLHE 274 (290)
T ss_dssp -TT---SCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHH
T ss_pred -cc---CCHHHHHHHHHHhhcChhhCcCHHHHHhCcccccCc
Confidence 11 122467788899999999999999999999997554
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.2e-32 Score=275.17 Aligned_cols=219 Identities=25% Similarity=0.418 Sum_probs=160.8
Q ss_pred HcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC-CceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA-RHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~-~~~~l 498 (667)
.++|+..+.||+|+||.||+|+.. +..+|||.+.... ..+.|.+|++++++++|||||++++++.+. +..++
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~------~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~l 92 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYI 92 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC--------HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEE
T ss_pred hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchh------HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEE
Confidence 367889999999999999999875 7789999986432 245689999999999999999999997655 47899
Q ss_pred EEEecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 499 IYEYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
||||+++|+|.+++.... ...|.||||+||+++.++.+||+|||+++.....
T Consensus 93 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~-- 170 (278)
T 1byg_A 93 VTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST-- 170 (278)
T ss_dssp EECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC---------
T ss_pred EEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCcEEEeecccccccccc--
Confidence 999999999988775321 1123499999999999999999999999865432
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
.....||+.|+||| ++.++||||||+++|||+| |+.||..... ..... .......+..+...
T Consensus 171 -~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~----~~~~~-~~~~~~~~~~~~~~----- 239 (278)
T 1byg_A 171 -QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL----KDVVP-RVEKGYKMDAPDGC----- 239 (278)
T ss_dssp ------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCG----GGHHH-HHTTTCCCCCCTTC-----
T ss_pred -ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCH----HHHHH-HHhcCCCCCCcccC-----
Confidence 22346789999999 5778999999999999999 9999863321 11111 11111111222211
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
...+.+++.+||+.||++|||+.|+++.|....
T Consensus 240 -~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~ 272 (278)
T 1byg_A 240 -PPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIK 272 (278)
T ss_dssp -CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHH
Confidence 124667888999999999999999999987764
|
| >3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-32 Score=289.98 Aligned_cols=237 Identities=19% Similarity=0.261 Sum_probs=170.9
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC-----C
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA-----R 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~-----~ 494 (667)
++|+..+.||+|+||.||+|... ++..||||++.... .....+.+.+|++++++++|||||++++++... .
T Consensus 27 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 103 (364)
T 3qyz_A 27 PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFE---HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK 103 (364)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTT---CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred ccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEecccc---CcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccc
Confidence 47888999999999999999864 57789999986422 223446789999999999999999999999765 3
Q ss_pred ceEEEEEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 495 HSILIYEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
..++||||++ |+|.+.+..... ..|.||||+|||++.++.+||+|||+++......
T Consensus 104 ~~~iv~e~~~-~~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~ 182 (364)
T 3qyz_A 104 DVYIVQDLME-TDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDH 182 (364)
T ss_dssp CEEEEEECCS-EEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGG
T ss_pred eEEEEEcccC-cCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEEeCcceEecCCCC
Confidence 6899999998 588877654321 1244999999999999999999999998765332
Q ss_pred C---CcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh---------------
Q 042735 552 S---NWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM--------------- 606 (667)
Q Consensus 552 ~---~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~--------------- 606 (667)
. ..+..+||+.|+||| |+.++|||||||++|||+||+.||...........+...
T Consensus 183 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 262 (364)
T 3qyz_A 183 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINL 262 (364)
T ss_dssp CBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCH
T ss_pred CccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhh
Confidence 1 124568999999999 577899999999999999999998643211100000000
Q ss_pred hhccc-cCCCCCCCCCc---hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 607 RLDEM-LDPRLPPPSPD---VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 607 ~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
..... .........+. .......+.+++.+||+.||++|||++|++++.|+....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~~ 321 (364)
T 3qyz_A 263 KARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYY 321 (364)
T ss_dssp HHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTTC
T ss_pred hHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhhcc
Confidence 00000 00000000000 001123567888999999999999999999999997653
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.7e-32 Score=279.82 Aligned_cols=229 Identities=24% Similarity=0.355 Sum_probs=159.7
Q ss_pred HcCCcCcceeecccCeEEEEEEeC----CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC-
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR- 494 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~----~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~- 494 (667)
.++|...+.||+|+||.||+|... .+..||||++..... .....+.+.+|++++++++||||+++++++.+.+
T Consensus 33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~ 110 (313)
T 3brb_A 33 RNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNS--SQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSS 110 (313)
T ss_dssp GGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CC--CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC---
T ss_pred HHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEecccc--chhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccc
Confidence 357888889999999999999753 234799999865432 2234567999999999999999999999998755
Q ss_pred ----ceEEEEEecCCCChHHHhcccc------------------------------CCcccccccCCeeecCCCceEEec
Q 042735 495 ----HSILIYEYLKRGSLATNLSNDA------------------------------AAEELDISSKNVLLDLEHKAHVSD 540 (667)
Q Consensus 495 ----~~~lv~ey~~~g~L~~~l~~~~------------------------------~~~~~dlk~~NiLld~~~~~kl~D 540 (667)
..++||||+++|+|.+++.... ...|.||||+||+++.++.+||+|
T Consensus 111 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kl~D 190 (313)
T 3brb_A 111 QGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVAD 190 (313)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTSCEEECS
T ss_pred cCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEEee
Confidence 3499999999999998873210 112349999999999999999999
Q ss_pred ccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccc
Q 042735 541 FGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEM 611 (667)
Q Consensus 541 FGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~ 611 (667)
||+++....... ......||+.|+||| |+.++|||||||++|||+| |+.||..... ....... ...
T Consensus 191 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~----~~~~~~~-~~~ 265 (313)
T 3brb_A 191 FGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQN----HEMYDYL-LHG 265 (313)
T ss_dssp CSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG----GGHHHHH-HTT
T ss_pred cCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCH----HHHHHHH-HcC
Confidence 999987643321 123356788999999 5778999999999999999 8888753321 1111111 111
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 612 LDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
..+..+... ...+.+++.+||+.+|++|||+.+++++|......
T Consensus 266 ~~~~~~~~~------~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~ 309 (313)
T 3brb_A 266 HRLKQPEDC------LDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLES 309 (313)
T ss_dssp CCCCCBTTC------CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCccc------cHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence 111112111 12467788899999999999999999998876543
|
| >3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-32 Score=284.10 Aligned_cols=234 Identities=20% Similarity=0.294 Sum_probs=170.3
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEe--CCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSH--ARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~--~~~~ 496 (667)
++|+..+.||+|+||.||+|.. .+++.||||++... ..+.+.+|++++++++ ||||+++++++.+ ....
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-------~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~ 108 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-------KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTP 108 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-------CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc-------chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCce
Confidence 6788999999999999999975 56889999998642 2356889999999998 9999999999988 6678
Q ss_pred EEEEEecCCCChHHHhccc---------------------cCCcccccccCCeeecCCC-ceEEecccccccccCCCCCc
Q 042735 497 ILIYEYLKRGSLATNLSND---------------------AAAEELDISSKNVLLDLEH-KAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~---------------------~~~~~~dlk~~NiLld~~~-~~kl~DFGla~~~~~~~~~~ 554 (667)
++||||+++++|.+.+..- ....|.||||+|||++.++ .+||+|||+++....... .
T Consensus 109 ~lv~e~~~~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~-~ 187 (330)
T 3nsz_A 109 ALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE-Y 187 (330)
T ss_dssp EEEEECCCCCCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCC-C
T ss_pred EEEEeccCchhHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCc-c
Confidence 9999999999998776431 1123459999999999776 899999999987654332 3
Q ss_pred ccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC----------CChhhhhhh----------
Q 042735 555 SALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL----------PSPSVINMR---------- 607 (667)
Q Consensus 555 ~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~----------~~~~~~~~~---------- 607 (667)
....||+.|+||| |+.++|||||||++|||+||+.||....... .........
T Consensus 188 ~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (330)
T 3nsz_A 188 NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPR 267 (330)
T ss_dssp CSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTH
T ss_pred ccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccc
Confidence 4567999999998 5678999999999999999999974211000 000000000
Q ss_pred hccccCCCCCC------CCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 608 LDEMLDPRLPP------PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 608 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
........... ...........+.+++.+||+.||++|||++|++++.||..+..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~hp~f~~~~~ 328 (330)
T 3nsz_A 268 FNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVK 328 (330)
T ss_dssp HHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTSGGGTTCC-
T ss_pred hhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcCccHhhhcc
Confidence 00000000000 00000011235778889999999999999999999999987653
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-32 Score=276.94 Aligned_cols=217 Identities=23% Similarity=0.335 Sum_probs=167.6
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe------
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH------ 492 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~------ 492 (667)
..+|+..+.||+|+||.||+|... +++.+|||++.... +.+.+|++++++++||||+++++++..
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~ 81 (284)
T 2a19_B 10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN--------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPE 81 (284)
T ss_dssp HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS--------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC--
T ss_pred ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc--------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcc
Confidence 357889999999999999999875 68899999986431 246789999999999999999998864
Q ss_pred ----------CCceEEEEEecCCCChHHHhcccc---C-----------------------CcccccccCCeeecCCCce
Q 042735 493 ----------ARHSILIYEYLKRGSLATNLSNDA---A-----------------------AEELDISSKNVLLDLEHKA 536 (667)
Q Consensus 493 ----------~~~~~lv~ey~~~g~L~~~l~~~~---~-----------------------~~~~dlk~~NiLld~~~~~ 536 (667)
....++||||+++|+|.+++.... . ..|.||||+||+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~ 161 (284)
T 2a19_B 82 TSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQV 161 (284)
T ss_dssp -------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEE
T ss_pred cccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCCCE
Confidence 345799999999999999885321 0 1133999999999999999
Q ss_pred EEecccccccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhcc
Q 042735 537 HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDE 610 (667)
Q Consensus 537 kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~ 610 (667)
||+|||+++....... .....||+.|+||| ++.++|||||||++|||+||+.|+.... .....
T Consensus 162 kl~Dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~----------~~~~~ 230 (284)
T 2a19_B 162 KIGDFGLVTSLKNDGK-RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETS----------KFFTD 230 (284)
T ss_dssp EECCCTTCEESSCCSC-CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHH----------HHHHH
T ss_pred EECcchhheecccccc-ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHH----------HHHHH
Confidence 9999999987654332 33457999999999 6789999999999999999998853110 00111
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 611 MLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.....++...+. .+.+++.+||+.||++|||+.|++++++.....
T Consensus 231 ~~~~~~~~~~~~------~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~ 275 (284)
T 2a19_B 231 LRDGIISDIFDK------KEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKS 275 (284)
T ss_dssp HHTTCCCTTSCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC-
T ss_pred hhcccccccCCH------HHHHHHHHHccCChhhCcCHHHHHHHHHHHhhC
Confidence 112222222221 356788899999999999999999999886543
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-32 Score=281.52 Aligned_cols=224 Identities=21% Similarity=0.376 Sum_probs=160.2
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCce----EEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEF----LAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~----~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
++|+..+.||+|+||.||+|... ++.. +|+|.+..... ....+.+.+|+.++++++|||||++++++....
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~---~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~- 90 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS---PKANKEILDEAYVMASVDNPHVCRLLGICLTST- 90 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSS---CCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccC---HHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-
Confidence 57888999999999999999864 4444 47777654322 123467999999999999999999999998764
Q ss_pred eEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
.++|+||+++|+|.+++.... ...|.||||+|||++.++.+||+|||+++.....
T Consensus 91 ~~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~ 170 (327)
T 3lzb_A 91 VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAE 170 (327)
T ss_dssp EEEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC-------
T ss_pred ceEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccCc
Confidence 788999999999998875421 1124499999999999999999999999876433
Q ss_pred CC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 551 SS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 551 ~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
.. ......||+.|+||| |+.++|||||||++|||+| |+.||...... ... ...........+..
T Consensus 171 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~----~~~-~~~~~~~~~~~~~~-- 243 (327)
T 3lzb_A 171 EKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS----EIS-SILEKGERLPQPPI-- 243 (327)
T ss_dssp ---------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG----GHH-HHHHTTCCCCCCTT--
T ss_pred cccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHH----HHH-HHHHcCCCCCCCcc--
Confidence 22 123345788999999 6789999999999999999 99998643211 111 11111111111111
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
....+.+++.+||+.+|++|||++|+++.+....
T Consensus 244 ----~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 277 (327)
T 3lzb_A 244 ----CTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMA 277 (327)
T ss_dssp ----BCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 1224667888999999999999999999887654
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-32 Score=282.93 Aligned_cols=224 Identities=25% Similarity=0.370 Sum_probs=165.4
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCce--EEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEF--LAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~--~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~ 496 (667)
++|...+.||+|+||.||+|+.. ++.. +|||.+..... ....+.+.+|++++.++ +||||+++++++.+.+..
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~---~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~ 101 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS---KDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL 101 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC---------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccc---hHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCce
Confidence 67888999999999999999864 4544 48898764322 22345689999999999 899999999999999999
Q ss_pred EEEEEecCCCChHHHhcccc-----------------C-----------------------CcccccccCCeeecCCCce
Q 042735 497 ILIYEYLKRGSLATNLSNDA-----------------A-----------------------AEELDISSKNVLLDLEHKA 536 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~-----------------~-----------------------~~~~dlk~~NiLld~~~~~ 536 (667)
++||||+++|+|.+++.... . ..|.||||+||+++.++.+
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~ 181 (327)
T 1fvr_A 102 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVA 181 (327)
T ss_dssp EEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCE
T ss_pred EEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEEEcCCCeE
Confidence 99999999999999886432 0 1133999999999999999
Q ss_pred EEecccccccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhc
Q 042735 537 HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLD 609 (667)
Q Consensus 537 kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~ 609 (667)
||+|||+++...... ......+|+.|+||| |+.++|||||||++|||+| |+.||..... ........
T Consensus 182 kL~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~-----~~~~~~~~ 255 (327)
T 1fvr_A 182 KIADFGLSRGQEVYV-KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC-----AELYEKLP 255 (327)
T ss_dssp EECCTTCEESSCEEC-CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHHGG
T ss_pred EEcccCcCccccccc-cccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcH-----HHHHHHhh
Confidence 999999998533221 123346788999999 5789999999999999998 9999853221 11111111
Q ss_pred cccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 610 EMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.......+... ...+.+++.+||+.+|++|||++|++++|....
T Consensus 256 ~~~~~~~~~~~------~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 299 (327)
T 1fvr_A 256 QGYRLEKPLNC------DDEVYDLMRQCWREKPYERPSFAQILVSLNRML 299 (327)
T ss_dssp GTCCCCCCTTB------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCC------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 11111112111 124667888999999999999999999987653
|
| >1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-32 Score=277.69 Aligned_cols=229 Identities=17% Similarity=0.197 Sum_probs=169.2
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~l 498 (667)
++|...+.||+|+||.||+|.. .+++.||||++..... .+.+.+|++++.++ +|+|++++++++.+....++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~l 83 (298)
T 1csn_A 10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD------APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVL 83 (298)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT------SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc------cHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEE
Confidence 4688899999999999999985 6688999998764322 23477899999999 79999999999999999999
Q ss_pred EEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCc-----eEEeccccccccc
Q 042735 499 IYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHK-----AHVSDFGIAKFLK 548 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~-----~kl~DFGla~~~~ 548 (667)
||||+ +|+|.+++..... ..|.||||+||+++.++. +||+|||+++...
T Consensus 84 v~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~ 162 (298)
T 1csn_A 84 VIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYR 162 (298)
T ss_dssp EEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESB
T ss_pred EEEec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccc
Confidence 99999 9999988763211 123499999999988776 9999999998765
Q ss_pred CCCC-------CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCC
Q 042735 549 PDSS-------NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPR 615 (667)
Q Consensus 549 ~~~~-------~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (667)
.... ......||+.|+||| ++.++|||||||++|||+||+.||......... ............+.
T Consensus 163 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~-~~~~~~~~~~~~~~ 241 (298)
T 1csn_A 163 DPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNK-QKYERIGEKKQSTP 241 (298)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHH-HHHHHHHHHHHHSC
T ss_pred cccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccH-HHHHHHHhhccCcc
Confidence 4322 134567999999999 567899999999999999999998643221110 00000000000000
Q ss_pred CCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 616 LPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.+...+ .....+.+++.+||+.+|++|||+++|++.+.....
T Consensus 242 ~~~~~~---~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~ 283 (298)
T 1csn_A 242 LRELCA---GFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLE 283 (298)
T ss_dssp HHHHTT---TSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHh---hCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHH
Confidence 000000 112256788889999999999999999999877643
|
| >2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-33 Score=286.54 Aligned_cols=242 Identities=21% Similarity=0.321 Sum_probs=163.9
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEE--------
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCS-------- 491 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~-------- 491 (667)
++|...+.||+|+||.||+|.... ++.||||++... .....+.+.+|++++++++|||||++++++.
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 86 (320)
T 2i6l_A 11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLT----DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTD 86 (320)
T ss_dssp TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECC----SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC
T ss_pred CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecC----ChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccc
Confidence 568888999999999999998754 889999987642 2334567999999999999999999999884
Q ss_pred ------eCCceEEEEEecCCCChHHHhccccC-----------------------CcccccccCCeeec-CCCceEEecc
Q 042735 492 ------HARHSILIYEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLD-LEHKAHVSDF 541 (667)
Q Consensus 492 ------~~~~~~lv~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld-~~~~~kl~DF 541 (667)
+....++||||++ |+|.+.+..... ..|.||||+||+++ .++.+||+||
T Consensus 87 ~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~Df 165 (320)
T 2i6l_A 87 DVGSLTELNSVYIVQEYME-TDLANVLEQGPLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDF 165 (320)
T ss_dssp ----CCSCSEEEEEEECCS-EEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEEEECCC
T ss_pred ccccccccCceeEEeeccC-CCHHHHhhcCCccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeEEEccC
Confidence 3467899999998 689887754321 22449999999998 5679999999
Q ss_pred cccccccCCC---CCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh-----
Q 042735 542 GIAKFLKPDS---SNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM----- 606 (667)
Q Consensus 542 Gla~~~~~~~---~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~----- 606 (667)
|+++...... .......||+.|+||| ++.++|||||||++|||+||+.||...............
T Consensus 166 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~ 245 (320)
T 2i6l_A 166 GLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVH 245 (320)
T ss_dssp TTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCC
T ss_pred ccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCc
Confidence 9998764321 1223456899999999 456899999999999999999998643211000000000
Q ss_pred --hhccccC-------CCCCCCCCch----HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhccCCC
Q 042735 607 --RLDEMLD-------PRLPPPSPDV----QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSYAHP 667 (667)
Q Consensus 607 --~~~~~~~-------~~~~~~~~~~----~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~~~~~ 667 (667)
...+... .....+.... ......+.+++.+||+.||++|||++|++++.|+....++.+.|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~p~~~~ 319 (320)
T 2i6l_A 246 EEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSHPYMSIYSFPMDEP 319 (320)
T ss_dssp HHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTSHHHHTTCC-----
T ss_pred hhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCCcccccccCccCCC
Confidence 0000000 0000000000 01123567888999999999999999999999999887775543
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-32 Score=280.79 Aligned_cols=227 Identities=23% Similarity=0.350 Sum_probs=151.9
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHH-HHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIE-ALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~-~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
++|...+.||+|+||.||+|... +++.||||++..... ......+.+|+. +++.++|||||+++|++.+.+..++
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~l 98 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVD---EKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWI 98 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCC---HHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEE
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccC---chHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEE
Confidence 57888899999999999999874 688999999865422 233445667776 6778899999999999999999999
Q ss_pred EEEecCCCChHHHhcc------c-----------------------c-CCcccccccCCeeecCCCceEEeccccccccc
Q 042735 499 IYEYLKRGSLATNLSN------D-----------------------A-AAEELDISSKNVLLDLEHKAHVSDFGIAKFLK 548 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~------~-----------------------~-~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~ 548 (667)
||||+++ +|.+.+.. . . ...|.||||+||+++.++.+||+|||+++...
T Consensus 99 v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~ 177 (327)
T 3aln_A 99 CMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLV 177 (327)
T ss_dssp EECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC--
T ss_pred EEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCCCEEEccCCCceecc
Confidence 9999996 66554431 1 1 22345999999999999999999999998764
Q ss_pred CCCCCcccccccccccCCCC----------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccC---CC
Q 042735 549 PDSSNWSALVGTYRYVAPDY----------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD---PR 615 (667)
Q Consensus 549 ~~~~~~~~~~Gt~~y~aPE~----------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~---~~ 615 (667)
... ......||+.|+|||. +.++|||||||++|||+||+.||........ ....... +.
T Consensus 178 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-------~~~~~~~~~~~~ 249 (327)
T 3aln_A 178 DSI-AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFD-------QLTQVVKGDPPQ 249 (327)
T ss_dssp -----------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC--------------CCCCCSCCCC
T ss_pred ccc-ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHH-------HHHHHhcCCCCC
Confidence 332 2234579999999993 4589999999999999999999863221100 0011111 11
Q ss_pred CCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 616 LPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
++.... ......+.+++.+||+.||++|||+.|++++.|+....
T Consensus 250 ~~~~~~--~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~~~ 293 (327)
T 3aln_A 250 LSNSEE--REFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYE 293 (327)
T ss_dssp CCCCSS--CCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHH
T ss_pred CCCccc--ccCCHHHHHHHHHHhhCChhhCcCHHHHHhChHHHHhH
Confidence 111100 01122567788899999999999999999999987543
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=284.68 Aligned_cols=278 Identities=27% Similarity=0.390 Sum_probs=159.0
Q ss_pred CCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEE
Q 042735 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLA 80 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~ 80 (667)
+++|+.|+|++|.+++..| +.++++|++|+|++|++.+..+ ++++++|++|+|++|.+++. |. +.. .+|+.|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEE
Confidence 4667777777777766543 6677777777777777765433 67777777777777776643 32 333 4577777
Q ss_pred cccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCC
Q 042735 81 LENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFG 160 (667)
Q Consensus 81 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 160 (667)
|++|.+.+. + .+..+.+|+.|+++ |.+.+.. .+.++++|+.|++++|.+++. ..+..+++|++|++++|.+.+
T Consensus 141 l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 141 LSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp EEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccc
Confidence 777766542 1 24444444444443 2222221 255666666666666666543 235666666666666666655
Q ss_pred ccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccC
Q 042735 161 EIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240 (667)
Q Consensus 161 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 240 (667)
..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..
T Consensus 214 ~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~ 285 (466)
T 1o6v_A 214 ITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285 (466)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred ccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC
Confidence 433 44556666666666665542 235555666666666665554332 5555666666666665554322 555
Q ss_pred CCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCC
Q 042735 241 LTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGR 304 (667)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~ 304 (667)
+++|+.|++++|++++..+ +..+++|+.|++++|++.+..| +..+++|+.|++++|.+.+
T Consensus 286 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 5566666666665555433 4555556666666555544433 4455555555555555543
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-33 Score=294.92 Aligned_cols=218 Identities=11% Similarity=0.067 Sum_probs=160.7
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHH---HHHHhcCCCCeeEEE-------EE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEI---EALTKIRHRNIVKFY-------GF 489 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~---~~l~~l~H~niv~~~-------g~ 489 (667)
++|...+.||+|+||.||+|.. .+++.||||++....... ....+.|.+|+ +++++++|||||+++ ++
T Consensus 73 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~-~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 73 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPP-SNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp EEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CC-TTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred ceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccc-hHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 5688889999999999999986 568899999986432211 22356799999 566677899999998 77
Q ss_pred EEeCC-----------------ceEEEEEecCCCChHHHhcccc-------------------------------CCccc
Q 042735 490 CSHAR-----------------HSILIYEYLKRGSLATNLSNDA-------------------------------AAEEL 521 (667)
Q Consensus 490 ~~~~~-----------------~~~lv~ey~~~g~L~~~l~~~~-------------------------------~~~~~ 521 (667)
+.+.+ ..++||||+ +|+|.+++.... ...|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHr 230 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHT 230 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTEECS
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCeecC
Confidence 66553 288999999 689988775311 01134
Q ss_pred ccccCCeeecCCCceEEecccccccccCCCCCcccccccccccCCC-----------------CCCCchHHHHHHHHHHH
Q 042735 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-----------------YRKKCDVYSFRVLALEV 584 (667)
Q Consensus 522 dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE-----------------~~~~~DV~sfGvvl~El 584 (667)
||||+|||++.++.+||+|||+++.... .....+| +.|+||| |+.++|||||||++|||
T Consensus 231 Dikp~NIll~~~~~~kL~DFG~a~~~~~---~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~el 306 (377)
T 3byv_A 231 YLRPVDIVLDQRGGVFLTGFEHLVRDGA---RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWI 306 (377)
T ss_dssp CCCGGGEEECTTCCEEECCGGGCEETTC---EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHH
T ss_pred CCCHHHEEEcCCCCEEEEechhheecCC---cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHH
Confidence 9999999999999999999999986332 3345678 9999998 34578999999999999
Q ss_pred HhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 585 IKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 585 ltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
+||+.||......... ..... .. ...+ ..+.+++.+||+.||++|||+.|++++.||...
T Consensus 307 ltg~~Pf~~~~~~~~~--------~~~~~-~~-~~~~------~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~ 366 (377)
T 3byv_A 307 WCADLPITKDAALGGS--------EWIFR-SC-KNIP------QPVRALLEGFLRYPKEDRLLPLQAMETPEYEQL 366 (377)
T ss_dssp HHSSCCC------CCS--------GGGGS-SC-CCCC------HHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHHH
T ss_pred HHCCCCCcccccccch--------hhhhh-hc-cCCC------HHHHHHHHHHcCCCchhCCCHHHHhhChHHHHH
Confidence 9999998633221111 01111 11 1111 246678889999999999999999999998753
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-33 Score=286.02 Aligned_cols=233 Identities=27% Similarity=0.427 Sum_probs=152.9
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|...+.||+|+||.||+|.. .+++.||||++..... ....+.+.+|++++++++||||+++++++...+..++
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 90 (303)
T 2vwi_A 14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKC---QTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWL 90 (303)
T ss_dssp CCCCEEEEECC---CCCEEEEEC----CEEEEECCC-------------------CCCCCCCTTBCCEEEEEESSSCEEE
T ss_pred hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhc---chhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEE
Confidence 36788999999999999999986 4678899998764321 1234568899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcc--------cc------------------------CCcccccccCCeeecCCCceEEeccccccc
Q 042735 499 IYEYLKRGSLATNLSN--------DA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKF 546 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~--------~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~ 546 (667)
||||+++|+|.+.+.. .. ...|.||||+||+++.++.+||+|||+++.
T Consensus 91 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~ 170 (303)
T 2vwi_A 91 VMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAF 170 (303)
T ss_dssp EEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCHHHHH
T ss_pred EehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEEEEeccchhe
Confidence 9999999999887752 00 112349999999999999999999999986
Q ss_pred ccCCCC-----CcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCC
Q 042735 547 LKPDSS-----NWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP 614 (667)
Q Consensus 547 ~~~~~~-----~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~ 614 (667)
...... ......||+.|+||| ++.++|||||||++|||+||+.||...... .......... .+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~----~~~~~~~~~~-~~ 245 (303)
T 2vwi_A 171 LATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPM----KVLMLTLQND-PP 245 (303)
T ss_dssp CC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGG----GHHHHHHTSS-CC
T ss_pred eccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchh----hHHHHHhccC-CC
Confidence 543211 123457999999999 578999999999999999999998643211 0000000000 00
Q ss_pred CCCCC---CCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 615 RLPPP---SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 615 ~~~~~---~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..... ..........+.+++.+||+.||++|||++|++++.||...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~ 294 (303)
T 2vwi_A 246 SLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRHKFFQKA 294 (303)
T ss_dssp CTTC-----CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHTSTTC---
T ss_pred ccccccccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhhChhhhcC
Confidence 00000 00000111246678889999999999999999999887643
|
| >2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-32 Score=278.85 Aligned_cols=230 Identities=19% Similarity=0.227 Sum_probs=166.8
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEE--eCCce
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCS--HARHS 496 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~--~~~~~ 496 (667)
.++|...+.||+|+||.||+|.. .++..+|||++............+.+.+|++++++++||||+++++++. +....
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 47899999999999999999987 4578899998864211111123467999999999999999999999984 45678
Q ss_pred EEEEEecCCCChHHHhccc---c-----------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 497 ILIYEYLKRGSLATNLSND---A-----------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~---~-----------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
++||||+++| +.+.+... . ...|.||||+||+++.++.+||+|||+++.....
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~ 162 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPF 162 (305)
T ss_dssp EEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTT
T ss_pred EEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCcEEeeccccccccCcc
Confidence 9999999987 54444321 0 1124499999999999999999999999876532
Q ss_pred C--CCcccccccccccCCCC--------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCC
Q 042735 551 S--SNWSALVGTYRYVAPDY--------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620 (667)
Q Consensus 551 ~--~~~~~~~Gt~~y~aPE~--------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (667)
. .......||+.|+|||. +.++|||||||++|||+||+.||..... ..... .+.. .....+...
T Consensus 163 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~-~i~~-~~~~~~~~~ 236 (305)
T 2wtk_C 163 AADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNI----YKLFE-NIGK-GSYAIPGDC 236 (305)
T ss_dssp CSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSH----HHHHH-HHHH-CCCCCCSSS
T ss_pred ccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchH----HHHHH-HHhc-CCCCCCCcc
Confidence 2 12234579999999992 3479999999999999999999863221 01111 1101 011122211
Q ss_pred CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 621 ~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
+ ..+.+++.+||+.||++|||++|++++.|+.....
T Consensus 237 ~------~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~~ 272 (305)
T 2wtk_C 237 G------PPLSDLLKGMLEYEPAKRFSIRQIRQHSWFRKKHP 272 (305)
T ss_dssp C------HHHHHHHHHHTCSSTTTSCCHHHHHHSHHHHSCCC
T ss_pred C------HHHHHHHHHHccCChhhCCCHHHHhcCcccccCCC
Confidence 1 24567888999999999999999999999975543
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-32 Score=289.24 Aligned_cols=232 Identities=21% Similarity=0.280 Sum_probs=164.0
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc-----
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH----- 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~----- 495 (667)
.+|...+.||+|+||.||+|+...+..+|+|++..... ...+|++++++++|||||++++++.....
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~--------~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~ 111 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR--------FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEV 111 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT--------SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc--------hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCce
Confidence 46888899999999999999987777799998754321 12369999999999999999999965443
Q ss_pred -eEEEEEecCCCChHHHhc----cc-----------------------cCCcccccccCCeeec-CCCceEEeccccccc
Q 042735 496 -SILIYEYLKRGSLATNLS----ND-----------------------AAAEELDISSKNVLLD-LEHKAHVSDFGIAKF 546 (667)
Q Consensus 496 -~~lv~ey~~~g~L~~~l~----~~-----------------------~~~~~~dlk~~NiLld-~~~~~kl~DFGla~~ 546 (667)
.++||||++++.+..... .. ....|.||||+|||++ .++.+||+|||+|+.
T Consensus 112 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~ 191 (394)
T 4e7w_A 112 FLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKI 191 (394)
T ss_dssp EEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred EEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCCccc
Confidence 789999999764432211 00 1123459999999999 899999999999987
Q ss_pred ccCCCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhh-----------hhhhh
Q 042735 547 LKPDSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV-----------INMRL 608 (667)
Q Consensus 547 ~~~~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~-----------~~~~~ 608 (667)
...... .....||+.|+||| |+.++|||||||++|||++|+.||...........+ .....
T Consensus 192 ~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~ 270 (394)
T 4e7w_A 192 LIAGEP-NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMN 270 (394)
T ss_dssp CCTTCC-CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHC
T ss_pred ccCCCC-CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhC
Confidence 654332 33467899999998 577899999999999999999998643211000000 00000
Q ss_pred ccccCCCCCCCCCc-hH-----HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 609 DEMLDPRLPPPSPD-VQ-----GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 609 ~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
........+...+. .. .....+.+++.+||+.||++|||+.|+++|.||....
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~ 329 (394)
T 4e7w_A 271 PNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFFDELR 329 (394)
T ss_dssp GGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGSTTT
T ss_pred hhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcChhhhhhc
Confidence 00111111110000 00 0123577888999999999999999999999997543
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-32 Score=289.12 Aligned_cols=234 Identities=10% Similarity=0.003 Sum_probs=155.5
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc--CCCCeeEEE-------EEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI--RHRNIVKFY-------GFC 490 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l--~H~niv~~~-------g~~ 490 (667)
.+|...+.||+|+||.||+|... +++.||||++...... .....+.+.+|+.++..+ +|||||+++ +++
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAEN-SRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTT-HHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccc-cccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 35788899999999999999864 6889999998764332 233455678886544444 699988866 444
Q ss_pred EeC-----------------CceEEEEEecCCCChHHHhccc------c-------------------------CCcccc
Q 042735 491 SHA-----------------RHSILIYEYLKRGSLATNLSND------A-------------------------AAEELD 522 (667)
Q Consensus 491 ~~~-----------------~~~~lv~ey~~~g~L~~~l~~~------~-------------------------~~~~~d 522 (667)
... ...++||||++ |+|.+++... . ...|.|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHrD 219 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGH 219 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEEETT
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCccCc
Confidence 433 23799999999 8998877531 0 011349
Q ss_pred cccCCeeecCCCceEEecccccccccCCCCCcccccccccccCCC--------CCCCchHHHHHHHHHHHHhCCCCCCCC
Q 042735 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD--------YRKKCDVYSFRVLALEVIKGKHPRGFV 594 (667)
Q Consensus 523 lk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE--------~~~~~DV~sfGvvl~ElltG~~p~~~~ 594 (667)
|||+|||++.++.+||+|||+|+..... .....||+.|+||| |+.++|||||||++|||+||+.||...
T Consensus 220 ikp~NIll~~~~~~kL~DFG~a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~ 296 (371)
T 3q60_A 220 FTPDNLFIMPDGRLMLGDVSALWKVGTR---GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLV 296 (371)
T ss_dssp CSGGGEEECTTSCEEECCGGGEEETTCE---EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBC
T ss_pred CCHHHEEECCCCCEEEEecceeeecCCC---ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999999865421 22456779999999 466899999999999999999998643
Q ss_pred ccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 595 SSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
....... ................+. .......+.+++.+||+.||++|||+.|++++.||.....
T Consensus 297 ~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~ 361 (371)
T 3q60_A 297 TPGIKGS-WKRPSLRVPGTDSLAFGS--CTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQN 361 (371)
T ss_dssp CTTCTTC-CCBCCTTSCCCCSCCCTT--SSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHHHH
T ss_pred Ccccccc-hhhhhhhhccccccchhh--ccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHHHH
Confidence 2111000 000000000011111110 0011224667888999999999999999999999986654
|
| >3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-32 Score=289.05 Aligned_cols=247 Identities=18% Similarity=0.236 Sum_probs=168.1
Q ss_pred HHHHHHHHcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCc-------hHHhHHHHHHHHHHHHhcCCCCeeE
Q 042735 413 YVEIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSD-------QIADQKEFFAEIEALTKIRHRNIVK 485 (667)
Q Consensus 413 ~~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~-------~~~~~~~~~~E~~~l~~l~H~niv~ 485 (667)
..++....++|...+.||+|+||.||+|....+..||||++....... .....+.+.+|++++++++|||||+
T Consensus 14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~ 93 (362)
T 3pg1_A 14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG 93 (362)
T ss_dssp HHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred HHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence 456667778999999999999999999998889999999885432211 1122367999999999999999999
Q ss_pred EEEEEEeC-----CceEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCc
Q 042735 486 FYGFCSHA-----RHSILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHK 535 (667)
Q Consensus 486 ~~g~~~~~-----~~~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~ 535 (667)
+++++... ...++||||++ |+|.+.+.... ...|.||||+||+++.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~ 172 (362)
T 3pg1_A 94 LRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNND 172 (362)
T ss_dssp CSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCC
T ss_pred eeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCCCC
Confidence 99998543 35799999999 57777664321 1124499999999999999
Q ss_pred eEEecccccccccCCCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh---
Q 042735 536 AHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN--- 605 (667)
Q Consensus 536 ~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~--- 605 (667)
+||+|||+++...... ......||+.|+||| ++.++|||||||++|||+||+.||..............
T Consensus 173 ~kl~Dfg~~~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~ 251 (362)
T 3pg1_A 173 ITICDFNLAREDTADA-NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVG 251 (362)
T ss_dssp EEECCTTC----------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHC
T ss_pred EEEEecCccccccccc-ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcC
Confidence 9999999998644332 234467999999999 46689999999999999999999863221000000000
Q ss_pred ------------hhhccccCCCCCC-CCCch----HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 606 ------------MRLDEMLDPRLPP-PSPDV----QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 606 ------------~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
......+...... +.... ......+.+++.+||+.||++|||++|++++.||...+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~ 324 (362)
T 3pg1_A 252 TPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRHPYFESLF 324 (362)
T ss_dssp CCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGTTTC
T ss_pred CCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcCchhhhcc
Confidence 0000000000000 00000 01123467888999999999999999999999997653
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-32 Score=278.19 Aligned_cols=231 Identities=20% Similarity=0.313 Sum_probs=173.3
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|...+.||+|+||.||+|+.. +++.||||++...... ....+.+.+|++++++++||||+++++++.+.+..++
T Consensus 21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 98 (287)
T 2wei_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAK--NKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYI 98 (287)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBS--SSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccc--hHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEE
Confidence 467899999999999999999875 6888999987543221 1234578999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCC---CceEEecccccccccCCC
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLE---HKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~---~~~kl~DFGla~~~~~~~ 551 (667)
||||+++++|.+.+.... ...|.||||+||+++.+ +.+||+|||+++......
T Consensus 99 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~ 178 (287)
T 2wei_A 99 VGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT 178 (287)
T ss_dssp EECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCS
T ss_pred EEEccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcceeecCCC
Confidence 999999999987764321 11234999999999754 469999999998765432
Q ss_pred CCcccccccccccCCC-----CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 552 SNWSALVGTYRYVAPD-----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE-----~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
......||+.|+||| ++.++||||||+++|||+||+.||..... ....... .......+.+.....
T Consensus 179 -~~~~~~~~~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~ 249 (287)
T 2wei_A 179 -KMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNE----YDILKRV----ETGKYAFDLPQWRTI 249 (287)
T ss_dssp -SCSCHHHHHTTCCHHHHTTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHH----HHCCCCCCSGGGTTS
T ss_pred -ccccccCcccccChHHhcCCCCCchhhHhHHHHHHHHHhCCCCCCCCCH----HHHHHHH----HcCCCCCCchhhhhc
Confidence 223456999999999 67899999999999999999999853221 1111111 111111111111111
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
...+.+++.+||+.+|++|||+.|++++.|+....
T Consensus 250 ~~~~~~li~~~l~~dp~~Rps~~ell~hp~~~~~~ 284 (287)
T 2wei_A 250 SDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKYS 284 (287)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHHHC
T ss_pred CHHHHHHHHHHcccChhhCcCHHHHhcCHHHhccc
Confidence 23567888899999999999999999999987654
|
| >2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-32 Score=289.59 Aligned_cols=234 Identities=19% Similarity=0.287 Sum_probs=153.3
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC------
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA------ 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~------ 493 (667)
++|...+.||+|+||.||+|.. .+++.||||++..... .....+.+.+|++++++++|||||++++++...
T Consensus 29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~ 106 (367)
T 2fst_X 29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ--SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF 106 (367)
T ss_dssp TTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTS--SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCcccc--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence 5788899999999999999975 5688999999865432 233456789999999999999999999999754
Q ss_pred CceEEEEEecCCCChHHHhcccc-----------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 494 RHSILIYEYLKRGSLATNLSNDA-----------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~-----------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
...++|+||+ +++|.+.+.... ...|.||||+|||++.++.+||+|||+++.....
T Consensus 107 ~~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~ 185 (367)
T 2fst_X 107 NDVYLVTHLM-GADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADE 185 (367)
T ss_dssp CCCEEEEECC-CEECC-----CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC----------
T ss_pred CeEEEEeccc-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEEeecccccccccc
Confidence 5679999999 678877654321 1234599999999999999999999999875432
Q ss_pred CCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh---------------hhh
Q 042735 551 SSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN---------------MRL 608 (667)
Q Consensus 551 ~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~---------------~~~ 608 (667)
.+..+||+.|+||| |+.++||||+||++|||+||+.||...........+.. ...
T Consensus 186 ---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~ 262 (367)
T 2fst_X 186 ---MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESA 262 (367)
T ss_dssp --------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHHH
T ss_pred ---CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHH
Confidence 34568999999999 56789999999999999999999864321100000000 000
Q ss_pred ccccC--CCCCCCCCc--hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 609 DEMLD--PRLPPPSPD--VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 609 ~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
...+. +..+..... .......+.+++.+||+.||++|||++|++++.|+...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~hp~~~~~ 318 (367)
T 2fst_X 263 RNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQY 318 (367)
T ss_dssp HHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTT
T ss_pred HHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcChhhhhc
Confidence 00000 000100000 00011346788899999999999999999999998754
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-31 Score=272.32 Aligned_cols=269 Identities=20% Similarity=0.240 Sum_probs=238.0
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcc
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALE 82 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~ 82 (667)
++|+.|+|++|.++++.+..|.++++|++|+|++|++++..|..|+++++|++|+|++|+++ .+|..+. .+|+.|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP-KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC-TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc-ccccEEECC
Confidence 57899999999999988889999999999999999999888999999999999999999998 5666554 579999999
Q ss_pred cccccccCCccccCCCCccEEEeeCccccc--ccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCC
Q 042735 83 NNHFTGNLRHNICRNGALERVIVGGNHFRG--PIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFG 160 (667)
Q Consensus 83 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~--~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 160 (667)
+|.+++..+..+..+.+|+.|++++|.+.. ..+..+.++++|+.|++++|.++.. |..+ .++|++|++++|.+.+
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~--~~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQGL--PPSLTELHLDGNKITK 206 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSSC--CTTCSEEECTTSCCCE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-Cccc--cccCCEEECCCCcCCc
Confidence 999998888889999999999999999964 6778899999999999999999864 4333 3899999999999998
Q ss_pred ccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccC
Q 042735 161 EIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240 (667)
Q Consensus 161 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 240 (667)
..+..+..+++|+.|+|++|.+++..+..+..+++|++|+|++|.+. .+|..+..+++|+.|++++|++++..+..|..
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 88899999999999999999999888878999999999999999998 67888999999999999999998777666653
Q ss_pred ------CCCCCeeeccCCcCCc--cchhhhhcccCCCeecCCCcc
Q 042735 241 ------LTKLEFLNLSTNRFSS--LIPESLGNLLKLHYLDLSKYQ 277 (667)
Q Consensus 241 ------l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~ls~n~ 277 (667)
.+.|+.|++++|.+.. ..|..|..+..|+.+++++|+
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3789999999999864 567889999999999999884
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-32 Score=279.45 Aligned_cols=225 Identities=23% Similarity=0.417 Sum_probs=160.8
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe------
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH------ 492 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~------ 492 (667)
.++|+..+.||+|+||.||+|+. .+++.||||++.. .....+.+.+|+.++++++||||+++++++.+
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 79 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRH-----TEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVK 79 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEE-----EHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEec-----cHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhh
Confidence 46789999999999999999986 4688999998853 22345679999999999999999999999865
Q ss_pred -------CCceEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEec
Q 042735 493 -------ARHSILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSD 540 (667)
Q Consensus 493 -------~~~~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~D 540 (667)
....++||||+++|+|.+.+.... ...|.||||+||+++.++.+||+|
T Consensus 80 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~d 159 (303)
T 1zy4_A 80 PMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGD 159 (303)
T ss_dssp ------CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECC
T ss_pred hhcccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCEEEee
Confidence 356899999999999998885321 112349999999999999999999
Q ss_pred ccccccccCCC--------------CCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC
Q 042735 541 FGIAKFLKPDS--------------SNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP 599 (667)
Q Consensus 541 FGla~~~~~~~--------------~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~ 599 (667)
||+++...... .......||+.|+||| ++.++|||||||++|||+| |+.....
T Consensus 160 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~--- 233 (303)
T 1zy4_A 160 FGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGME--- 233 (303)
T ss_dssp CCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHH---
T ss_pred CcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchh---
Confidence 99998654221 1223457999999998 4678999999999999998 4321100
Q ss_pred ChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 600 SPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..... ..... .....++..+. .....+.+++.+||+.||++|||++|++++.|+..
T Consensus 234 ~~~~~-~~~~~-~~~~~~~~~~~--~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~ 289 (303)
T 1zy4_A 234 RVNIL-KKLRS-VSIEFPPDFDD--NKMKVEKKIIRLLIDHDPNKRPGARTLLNSGWLPV 289 (303)
T ss_dssp HHHHH-HHHHS-TTCCCCTTCCT--TTSHHHHHHHHHHTCSSGGGSCCHHHHHHSSCSCC
T ss_pred HHHHH-Hhccc-cccccCccccc--cchHHHHHHHHHHHhcCcccCcCHHHHhCCCCcCC
Confidence 00000 00111 11122221111 11234567888999999999999999999988854
|
| >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-32 Score=285.31 Aligned_cols=243 Identities=19% Similarity=0.215 Sum_probs=160.8
Q ss_pred HHHHHHHcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe
Q 042735 414 VEIIRAINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH 492 (667)
Q Consensus 414 ~~~~~~~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~ 492 (667)
.+....+++|...+.||+|+||.||+|+.. ++..||||++..... ....+.+|++.+++++|||||++++++..
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~~~~l~~l~h~niv~~~~~~~~ 90 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR-----FRNRELQIMQDLAVLHHPNIVQLQSYFYT 90 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT-----CCCHHHHHHHHHHHHCCTTBCCEEEEEEE
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc-----ccHHHHHHHHHHHhcCCCCcccHHHhhhc
Confidence 345667899999999999999999999874 578999998754321 12346778888999999999999999976
Q ss_pred CCc-------eEEEEEecCCCChHH---H-------------------------hcc-ccCCcccccccCCeeecC-CCc
Q 042735 493 ARH-------SILIYEYLKRGSLAT---N-------------------------LSN-DAAAEELDISSKNVLLDL-EHK 535 (667)
Q Consensus 493 ~~~-------~~lv~ey~~~g~L~~---~-------------------------l~~-~~~~~~~dlk~~NiLld~-~~~ 535 (667)
.+. .++||||++++.+.. . ++. .....|.||||+|||++. ++.
T Consensus 91 ~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~ 170 (360)
T 3e3p_A 91 LGERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGT 170 (360)
T ss_dssp ECSSCTTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTE
T ss_pred cccccccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCc
Confidence 443 789999999753211 1 110 122345699999999996 899
Q ss_pred eEEecccccccccCCCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh--
Q 042735 536 AHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM-- 606 (667)
Q Consensus 536 ~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~-- 606 (667)
+||+|||+++....... .....||+.|+||| |+.++|||||||++|||+||+.||...............
T Consensus 171 ~kl~Dfg~a~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~ 249 (360)
T 3e3p_A 171 LKLCDFGSAKKLSPSEP-NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLG 249 (360)
T ss_dssp EEECCCTTCBCCCTTSC-CCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHC
T ss_pred EEEeeCCCceecCCCCC-cccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcC
Confidence 99999999987654332 33467999999999 567899999999999999999998643211000000000
Q ss_pred ----hhccccCCCCC-------CCCC-------chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 607 ----RLDEMLDPRLP-------PPSP-------DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 607 ----~~~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
.....+++... ...+ ........+.+++.+||+.||++|||+.|++++.||.....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~ 323 (360)
T 3e3p_A 250 CPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELHD 323 (360)
T ss_dssp CCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGGC
T ss_pred CCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcCccccccCC
Confidence 00000000000 0000 00012345778999999999999999999999999986643
|
| >2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-32 Score=288.29 Aligned_cols=235 Identities=18% Similarity=0.190 Sum_probs=161.8
Q ss_pred cCCcCcceeecccCeEEEEEEeC----CCceEEEEecCCCCCCchH-------HhHHHHHHHHHHHHhcCCCCeeEEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP----SKEFLAVKKFNSPLPSDQI-------ADQKEFFAEIEALTKIRHRNIVKFYGF 489 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~----~~~~~avk~~~~~~~~~~~-------~~~~~~~~E~~~l~~l~H~niv~~~g~ 489 (667)
++|...+.||+|+||.||+|... .+..+|||+.......... ...+.+.+|+..+..++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 56888999999999999999875 5678999988654221100 012347788999999999999999999
Q ss_pred EEe----CCceEEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCC--ceEEe
Q 042735 490 CSH----ARHSILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEH--KAHVS 539 (667)
Q Consensus 490 ~~~----~~~~~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~--~~kl~ 539 (667)
+.. ....++||||+ +|+|.+++..... ..|.||||+|||++.++ .+||+
T Consensus 117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kL~ 195 (345)
T 2v62_A 117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLA 195 (345)
T ss_dssp EEEESSSCEEEEEEEECE-EEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSSTTSEEEC
T ss_pred cccccCCCcEEEEEEecc-CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCCCCcEEEE
Confidence 988 67899999999 9999988764321 12349999999999887 99999
Q ss_pred cccccccccCCC-------CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh
Q 042735 540 DFGIAKFLKPDS-------SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM 606 (667)
Q Consensus 540 DFGla~~~~~~~-------~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~ 606 (667)
|||+++...... .......||+.|+||| |+.++|||||||++|||+||+.||..... .......
T Consensus 196 Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~---~~~~~~~ 272 (345)
T 2v62_A 196 DYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLK---DPVAVQT 272 (345)
T ss_dssp CCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTT---CHHHHHH
T ss_pred eCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCcccccc---ccHHHHH
Confidence 999998764321 1124567999999999 57799999999999999999999842110 1110000
Q ss_pred hhccccCCCCCCCCCc---hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 607 RLDEMLDPRLPPPSPD---VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 607 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.... ....++..... .......+.+++.+||+.+|++|||+++|++.|.....
T Consensus 273 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~ 328 (345)
T 2v62_A 273 AKTN-LLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI 328 (345)
T ss_dssp HHHH-HHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred HHHh-hcccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence 0000 00111100000 00112256778889999999999999999999876543
|
| >3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-32 Score=289.76 Aligned_cols=235 Identities=17% Similarity=0.181 Sum_probs=163.4
Q ss_pred HcCCcCcceeecccCeEEEEEEeCC------CceEEEEecCCCCCCchH-------HhHHHHHHHHHHHHhcCCCCeeEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPS------KEFLAVKKFNSPLPSDQI-------ADQKEFFAEIEALTKIRHRNIVKF 486 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~------~~~~avk~~~~~~~~~~~-------~~~~~~~~E~~~l~~l~H~niv~~ 486 (667)
.++|...+.||+|+||.||+|.... +..||||++......... .....+.+|+..+++++|||||++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~ 113 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY 113 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence 3578899999999999999998755 367999987653210000 001234456667788899999999
Q ss_pred EEEEEeC----CceEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeec--CCCc
Q 042735 487 YGFCSHA----RHSILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLD--LEHK 535 (667)
Q Consensus 487 ~g~~~~~----~~~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld--~~~~ 535 (667)
++++... ...++||||+ +|+|.+.+.... ...|.||||+|||++ .++.
T Consensus 114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~~~~~ 192 (364)
T 3op5_A 114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQ 192 (364)
T ss_dssp EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEESSCTTC
T ss_pred EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEecCCCCe
Confidence 9999775 4589999999 999998875431 112449999999999 8999
Q ss_pred eEEecccccccccCCCC-------CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChh
Q 042735 536 AHVSDFGIAKFLKPDSS-------NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPS 602 (667)
Q Consensus 536 ~kl~DFGla~~~~~~~~-------~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~ 602 (667)
+||+|||+++....... .....+||+.|+||| |+.++|||||||++|||+||+.||...........
T Consensus 193 ~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~ 272 (364)
T 3op5_A 193 VYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVR 272 (364)
T ss_dssp EEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHH
T ss_pred EEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHHH
Confidence 99999999987543211 123456999999999 57789999999999999999999863211000000
Q ss_pred hhh----hhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 603 VIN----MRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 603 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
... ......+++.++.. .....+.+++..||+.+|++||++++|++.+.....
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~ 329 (364)
T 3op5_A 273 DSKIRYRENIASLMDKCFPAA-----NAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLK 329 (364)
T ss_dssp HHHHHHHHCHHHHHHHHSCTT-----CCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHhcccc-----cCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 000 01111111111110 011246778889999999999999999998876543
|
| >2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-32 Score=284.38 Aligned_cols=237 Identities=20% Similarity=0.267 Sum_probs=168.5
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC-----C
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA-----R 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~-----~ 494 (667)
++|...+.||+|+||.||+|... +++.||||++.... .......+.+|++++++++||||+++++++... .
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 87 (353)
T 2b9h_A 11 SDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFD---KPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFN 87 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCS---SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCC
T ss_pred cceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccc---cchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccc
Confidence 57888999999999999999875 58889999986422 233456788999999999999999999998764 6
Q ss_pred ceEEEEEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 495 HSILIYEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
..++||||++ |+|.+.+..... ..|.||||+||+++.++.+||+|||+++......
T Consensus 88 ~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~ 166 (353)
T 2b9h_A 88 EVYIIQELMQ-TDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESA 166 (353)
T ss_dssp CEEEEECCCS-EEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECC---
T ss_pred eEEEEEeccC-ccHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEeccccccccccc
Confidence 7899999998 588876654221 2245999999999999999999999998764321
Q ss_pred C----------CcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhh-----------
Q 042735 552 S----------NWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV----------- 603 (667)
Q Consensus 552 ~----------~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~----------- 603 (667)
. .....+||+.|+||| ++.++|||||||++|||++|+.||............
T Consensus 167 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~ 246 (353)
T 2b9h_A 167 ADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDN 246 (353)
T ss_dssp -------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTT
T ss_pred ccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchhc
Confidence 1 122357899999999 456899999999999999999998643210000000
Q ss_pred -----hhhhhccccC--CCCCCCCCc--hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 604 -----INMRLDEMLD--PRLPPPSPD--VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 604 -----~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
......+.+. +..+..... .......+.+++.+||+.||++|||++|++++.|+....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~ 313 (353)
T 2b9h_A 247 DLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEHPYLQTYH 313 (353)
T ss_dssp TTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTC
T ss_pred cccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcCccccccC
Confidence 0000000000 000000000 001123467888999999999999999999999997644
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-32 Score=281.25 Aligned_cols=232 Identities=27% Similarity=0.383 Sum_probs=168.5
Q ss_pred cCCcCcceeecccCeEEEEEEe-----CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC-
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR- 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-----~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~- 494 (667)
.+|...+.||+|+||.||+|++ .+++.||||++.... ....+.|.+|++++++++||||+++++++...+
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 116 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST----EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR 116 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCC----SHHHHHHHHHHHHHHTCCCTTBCCEEEEECC---
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCC----HHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCC
Confidence 4678889999999999999984 357889999986532 234567999999999999999999999987654
Q ss_pred -ceEEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEeccccccccc
Q 042735 495 -HSILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLK 548 (667)
Q Consensus 495 -~~~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~ 548 (667)
..++||||+++|+|.+++..... ..|.||||+||+++.++.+||+|||+++...
T Consensus 117 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~ 196 (326)
T 2w1i_A 117 RNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLP 196 (326)
T ss_dssp -CCEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred CceEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecCcchhhcc
Confidence 78999999999999988864321 1133999999999999999999999998765
Q ss_pred CCCCC---cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCcc-------CCCChhhhhhhhcccc
Q 042735 549 PDSSN---WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSS-------ILPSPSVINMRLDEML 612 (667)
Q Consensus 549 ~~~~~---~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~-------~~~~~~~~~~~~~~~~ 612 (667)
..... .....||..|+||| ++.++|||||||++|||+||+.|+..... ...........+.+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (326)
T 2w1i_A 197 QDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELL 276 (326)
T ss_dssp SSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHH
T ss_pred ccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHh
Confidence 44321 22345788899999 46789999999999999999988642100 0000000000000111
Q ss_pred C--CCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 613 D--PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 613 ~--~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
. ...+.+ .. ....+.+++.+||+.+|++|||+.|+++.|.....
T Consensus 277 ~~~~~~~~~-~~---~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~ 322 (326)
T 2w1i_A 277 KNNGRLPRP-DG---CPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 322 (326)
T ss_dssp HTTCCCCCC-TT---CCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred hcCCCCCCC-Cc---ccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 1 111111 11 12356778889999999999999999999887654
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-31 Score=272.83 Aligned_cols=268 Identities=19% Similarity=0.247 Sum_probs=238.2
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcc
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALE 82 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~ 82 (667)
++|+.|+|++|.++++.|..|.++++|++|+|++|++++..|..|+++++|++|+|++|+++ .+|..+. .+|+.|+|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~-~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP-SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC-TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc-ccCCEEECC
Confidence 57999999999999988889999999999999999999888999999999999999999998 5666555 679999999
Q ss_pred cccccccCCccccCCCCccEEEeeCcccc--cccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCC
Q 042735 83 NNHFTGNLRHNICRNGALERVIVGGNHFR--GPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFG 160 (667)
Q Consensus 83 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~--~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 160 (667)
+|.+.+..+..+..+.+|+.|++++|.++ +..|..+..+ +|+.|++++|++++. |..+. ++|++|++++|.+.+
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI-PKDLP--ETLNELHLDHNKIQA 207 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC-CSSSC--SSCSCCBCCSSCCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc-Ccccc--CCCCEEECCCCcCCc
Confidence 99999877778999999999999999996 4677888888 999999999999864 43332 799999999999998
Q ss_pred ccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccC
Q 042735 161 EIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240 (667)
Q Consensus 161 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 240 (667)
..+..+..+++|+.|++++|.+.+..+..+..+++|++|+|++|.+. .+|..+..+++|+.|++++|.+++..+..|..
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 88899999999999999999999988888999999999999999998 67888999999999999999999777766654
Q ss_pred ------CCCCCeeeccCCcCC--ccchhhhhcccCCCeecCCCcc
Q 042735 241 ------LTKLEFLNLSTNRFS--SLIPESLGNLLKLHYLDLSKYQ 277 (667)
Q Consensus 241 ------l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~ls~n~ 277 (667)
..+|+.|++++|.+. +..|..+..+++|+.+++++|+
T Consensus 287 ~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 367999999999997 6678899999999999999875
|
| >4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-32 Score=285.83 Aligned_cols=233 Identities=20% Similarity=0.300 Sum_probs=165.2
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce---
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS--- 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~--- 496 (667)
++|...+.||+|+||.||+|.. .+++.||||++...... ....+.+.+|+.++++++|||||++++++...+..
T Consensus 42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 119 (371)
T 4exu_A 42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQS--EIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF 119 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSS--HHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccc--hhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence 4678889999999999999986 46889999998754332 23456789999999999999999999999877655
Q ss_pred ---EEEEEecCCCChHHHhccc----------------------cCCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ---ILIYEYLKRGSLATNLSND----------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ---~lv~ey~~~g~L~~~l~~~----------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
++||||+. |+|.+.+... ....|.||||+|||++.++.+||+|||+++.....
T Consensus 120 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~- 197 (371)
T 4exu_A 120 YDFYLVMPFMQ-TDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAE- 197 (371)
T ss_dssp CCCEEEEECCC-EEHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTCC-------
T ss_pred eeEEEEEcccc-ccHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCcccccccC-
Confidence 99999998 5777655321 11234599999999999999999999999865432
Q ss_pred CCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh---------------hhc
Q 042735 552 SNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM---------------RLD 609 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~---------------~~~ 609 (667)
.....||+.|+||| |+.++|||||||++|||+||+.||............... ...
T Consensus 198 --~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 275 (371)
T 4exu_A 198 --MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAK 275 (371)
T ss_dssp ----CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHH
T ss_pred --cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhhh
Confidence 33467999999999 467899999999999999999998643211000000000 000
Q ss_pred cccCCCCCCCCCch----HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 610 EMLDPRLPPPSPDV----QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 610 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.........+.... ......+.+++.+||+.||++|||++|++++.||..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~ 329 (371)
T 4exu_A 276 SYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEP 329 (371)
T ss_dssp HHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTT
T ss_pred hhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcCccccc
Confidence 00000000000000 011235678889999999999999999999999864
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-32 Score=280.58 Aligned_cols=226 Identities=22% Similarity=0.318 Sum_probs=165.0
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe----CCc
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH----ARH 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~----~~~ 495 (667)
++|...+.||+|+||.||+|+. .+++.||||++... .....+.+.+|++++++++|||||++++++.. ...
T Consensus 29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 104 (317)
T 2buj_A 29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH----EQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHE 104 (317)
T ss_dssp EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES----SHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEE
T ss_pred eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC----CHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCce
Confidence 5788999999999999999986 66889999987542 22345679999999999999999999999973 347
Q ss_pred eEEEEEecCCCChHHHhccc----c-C-----------------------CcccccccCCeeecCCCceEEecccccccc
Q 042735 496 SILIYEYLKRGSLATNLSND----A-A-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFL 547 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~----~-~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~ 547 (667)
.++||||+++|+|.+.+... . . ..|.||||+||+++.++.+||+|||+++..
T Consensus 105 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~ 184 (317)
T 2buj_A 105 AWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQA 184 (317)
T ss_dssp EEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCSSCEES
T ss_pred eEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCEEEEecCcchhc
Confidence 88999999999998877531 1 0 113499999999999999999999998764
Q ss_pred cCCCC---------CcccccccccccCCC---------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhc
Q 042735 548 KPDSS---------NWSALVGTYRYVAPD---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLD 609 (667)
Q Consensus 548 ~~~~~---------~~~~~~Gt~~y~aPE---------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~ 609 (667)
..... ......||+.|+||| ++.++|||||||++|||+||+.||......... ... ...
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~--~~~-~~~ 261 (317)
T 2buj_A 185 CIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDS--VAL-AVQ 261 (317)
T ss_dssp CEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSC--HHH-HHH
T ss_pred ccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccch--hhH-Hhh
Confidence 32111 012346799999999 356899999999999999999997521110000 000 011
Q ss_pred cccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 610 EMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.. ...+.. +. ....+.+++.+||+.||++|||++|++++|....
T Consensus 262 ~~--~~~~~~-~~---~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~ 305 (317)
T 2buj_A 262 NQ--LSIPQS-PR---HSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQ 305 (317)
T ss_dssp CC----CCCC-TT---SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTC
T ss_pred cc--CCCCcc-cc---CCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcC
Confidence 11 111111 11 1124677888999999999999999999998754
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-33 Score=289.89 Aligned_cols=235 Identities=19% Similarity=0.317 Sum_probs=172.8
Q ss_pred HcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCch-------------HHhHHHHHHHHHHHHhcCCCCeeEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQ-------------IADQKEFFAEIEALTKIRHRNIVKF 486 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~-------------~~~~~~~~~E~~~l~~l~H~niv~~ 486 (667)
.++|...+.||+|+||.||+|.. ++..||||++........ ....+.|.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 36788999999999999999998 889999998753211000 0011679999999999999999999
Q ss_pred EEEEEeCCceEEEEEecCCCChHHH------hccc---------------------------cCCcccccccCCeeecCC
Q 042735 487 YGFCSHARHSILIYEYLKRGSLATN------LSND---------------------------AAAEELDISSKNVLLDLE 533 (667)
Q Consensus 487 ~g~~~~~~~~~lv~ey~~~g~L~~~------l~~~---------------------------~~~~~~dlk~~NiLld~~ 533 (667)
++++.+.+..++||||+++|+|.++ +... ....|.||||+||+++.+
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~~~ 188 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKN 188 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEEECTT
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCCChHhEEEcCC
Confidence 9999999999999999999999877 4331 112345999999999999
Q ss_pred CceEEecccccccccCCCCCcccccccccccCCCC-------CC-CchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh
Q 042735 534 HKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDY-------RK-KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN 605 (667)
Q Consensus 534 ~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE~-------~~-~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~ 605 (667)
+.+||+|||+++..... ......||+.|+|||. +. ++|||||||++|||+||+.||...... .....
T Consensus 189 ~~~kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~~~~ 263 (348)
T 2pml_X 189 GRVKLSDFGESEYMVDK--KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISL---VELFN 263 (348)
T ss_dssp SCEEECCCTTCEECBTT--EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCS---HHHHH
T ss_pred CcEEEeccccccccccc--cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcH---HHHHH
Confidence 99999999999875433 2345679999999993 22 799999999999999999998643210 11111
Q ss_pred hhhccccCCCCCCCC-------------CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 606 MRLDEMLDPRLPPPS-------------PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 606 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
..... ....+... .........+.+++.+||+.||++|||++|++++.||....+
T Consensus 264 ~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~hp~f~~~~~ 331 (348)
T 2pml_X 264 NIRTK--NIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKHEWLADTNI 331 (348)
T ss_dssp HHTSC--CCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGTTCCH
T ss_pred HHhcc--CcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcCccccCCCH
Confidence 00000 00111000 000111235678888999999999999999999999875443
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=283.00 Aligned_cols=289 Identities=27% Similarity=0.367 Sum_probs=210.1
Q ss_pred CCCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEE
Q 042735 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVL 79 (667)
Q Consensus 1 ~L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L 79 (667)
++++|++|++++|.+++..+ +.++++|++|+|++|++.+.. . +.++++|++|++++|.+.+ ++. +.. .+|+.|
T Consensus 88 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L 161 (466)
T 1o6v_A 88 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID-P-LKNLTNLNRLELSSNTISD-ISA-LSGLTSLQQL 161 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-G-GTTCTTCSEEEEEEEEECC-CGG-GTTCTTCSEE
T ss_pred ccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh-H-HcCCCCCCEEECCCCccCC-Chh-hccCCcccEe
Confidence 47899999999999998655 889999999999999998653 3 8999999999999999875 443 333 457888
Q ss_pred EcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccC
Q 042735 80 ALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFF 159 (667)
Q Consensus 80 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 159 (667)
+++ |.+.+.. .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..+ ++.+++|+.|++++|.+.
T Consensus 162 ~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 162 SFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp EEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence 775 3443322 266777788888888777654 346777788888888887776544 667777888888877775
Q ss_pred CccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCccccc
Q 042735 160 GEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239 (667)
Q Consensus 160 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 239 (667)
+. +.+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++.+..+ ++
T Consensus 235 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~ 306 (466)
T 1o6v_A 235 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS 306 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG
T ss_pred cc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc
Confidence 43 356677778888888777776544 6777777788887777765433 6777777777777777765433 66
Q ss_pred CCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCcCcccccCCccc
Q 042735 240 SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECC 316 (667)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~ 316 (667)
.+++|+.|++++|.+++..| +..+++|+.|++++|++.+. ..+..+++|+.|++++|.+.+..| +..++.+
T Consensus 307 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 377 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRI 377 (466)
T ss_dssp GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCC
Confidence 77777777777777777654 66777777777777776553 356777777777777777766655 4444443
|
| >3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-32 Score=291.09 Aligned_cols=232 Identities=17% Similarity=0.235 Sum_probs=151.2
Q ss_pred CCcC-cceeecccCeEEEEEEeC---CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe--CCc
Q 042735 422 DFDA-KYCIGSGRHGSVYRAELP---SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH--ARH 495 (667)
Q Consensus 422 ~f~~-~~~lg~g~~g~vy~~~~~---~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~--~~~ 495 (667)
.|+. .+.||+|+||.||+|+.. ++..||||++..... .+.+.+|++++++++|||||++++++.. ...
T Consensus 21 ~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~------~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~ 94 (405)
T 3rgf_A 21 LFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI------SMSACREIALLRELKHPNVISLQKVFLSHADRK 94 (405)
T ss_dssp HEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC------CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTE
T ss_pred hhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC------CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCe
Confidence 3554 457999999999999865 467899999865322 2357899999999999999999999965 678
Q ss_pred eEEEEEecCCCChHHHhccc---------------------------------cCCcccccccCCeee----cCCCceEE
Q 042735 496 SILIYEYLKRGSLATNLSND---------------------------------AAAEELDISSKNVLL----DLEHKAHV 538 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~---------------------------------~~~~~~dlk~~NiLl----d~~~~~kl 538 (667)
.++||||+++ +|.+.+... ....|.||||+|||+ +.++.+||
T Consensus 95 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl 173 (405)
T 3rgf_A 95 VWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKI 173 (405)
T ss_dssp EEEEEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEE
T ss_pred EEEEEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEE
Confidence 9999999985 665554311 112245999999999 77899999
Q ss_pred ecccccccccCCC---CCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC----C-hhh
Q 042735 539 SDFGIAKFLKPDS---SNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP----S-PSV 603 (667)
Q Consensus 539 ~DFGla~~~~~~~---~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~----~-~~~ 603 (667)
+|||+|+...... ......+||+.|+||| |+.++|||||||++|||+||+.||........ . ...
T Consensus 174 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~ 253 (405)
T 3rgf_A 174 ADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQ 253 (405)
T ss_dssp CCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHH
T ss_pred EECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHH
Confidence 9999998765321 2234568999999999 46689999999999999999999853221100 0 000
Q ss_pred hhhhhccccCCCCCCCCC-----------------------chHH--------HHHHHHHHHHhccccCCCCCCCHHHHH
Q 042735 604 INMRLDEMLDPRLPPPSP-----------------------DVQG--------KLISIMEVAFSCLDVSPESRPTMQTIT 652 (667)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~-----------------------~~~~--------~~~~~~~~~~~Cl~~~p~~RPt~~ev~ 652 (667)
... +...+......... .... ....+.+++.+||+.||++|||++|++
T Consensus 254 l~~-i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L 332 (405)
T 3rgf_A 254 LDR-IFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAM 332 (405)
T ss_dssp HHH-HHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred HHH-HHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHh
Confidence 000 00000000000000 0000 012456888999999999999999999
Q ss_pred HHHHHhhhh
Q 042735 653 QQLLFSLVY 661 (667)
Q Consensus 653 ~~l~~~~~~ 661 (667)
++.||....
T Consensus 333 ~hp~f~~~~ 341 (405)
T 3rgf_A 333 QDPYFLEDP 341 (405)
T ss_dssp TSGGGTSSS
T ss_pred cChhhccCC
Confidence 999997643
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-32 Score=290.38 Aligned_cols=220 Identities=21% Similarity=0.271 Sum_probs=158.4
Q ss_pred cCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceEEEEEe
Q 042735 424 DAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSILIYEY 502 (667)
Q Consensus 424 ~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~lv~ey 502 (667)
...+.||+|+||+||.+...+++.||||++... ..+.+.+|++++.++ +|||||++++++.+.+..++||||
T Consensus 18 ~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~-------~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~ 90 (434)
T 2rio_A 18 VSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID-------FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALEL 90 (434)
T ss_dssp EEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG-------GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECC
T ss_pred eccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH-------HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEec
Confidence 345789999999998877778999999987531 234578999999987 799999999999999999999999
Q ss_pred cCCCChHHHhccccC-------------------------------CcccccccCCeeecCC-------------CceEE
Q 042735 503 LKRGSLATNLSNDAA-------------------------------AEELDISSKNVLLDLE-------------HKAHV 538 (667)
Q Consensus 503 ~~~g~L~~~l~~~~~-------------------------------~~~~dlk~~NiLld~~-------------~~~kl 538 (667)
+. |+|.+.+..... ..|.||||+|||++.+ +.+||
T Consensus 91 ~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL 169 (434)
T 2rio_A 91 CN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILI 169 (434)
T ss_dssp CS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEE
T ss_pred CC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccccCCCceEEEE
Confidence 96 699888754311 1133999999999754 48999
Q ss_pred ecccccccccCCCCC----cccccccccccCCC-------------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCC
Q 042735 539 SDFGIAKFLKPDSSN----WSALVGTYRYVAPD-------------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPS 600 (667)
Q Consensus 539 ~DFGla~~~~~~~~~----~~~~~Gt~~y~aPE-------------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~ 600 (667)
+|||+++........ ....+||+.|+||| ++.++|||||||++|||+| |+.||.....
T Consensus 170 ~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~---- 245 (434)
T 2rio_A 170 SDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS---- 245 (434)
T ss_dssp CCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT----
T ss_pred cccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchh----
Confidence 999999976543221 23467999999999 3557999999999999999 9999853211
Q ss_pred hhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 601 PSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
... ............. .........++.+++.+||+.||++|||+.||+++.||.
T Consensus 246 -~~~-~i~~~~~~~~~~~-~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~hp~f~ 300 (434)
T 2rio_A 246 -RES-NIIRGIFSLDEMK-CLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHPLFW 300 (434)
T ss_dssp -HHH-HHHHTCCCCCCCT-TCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGS
T ss_pred -hHH-HHhcCCCCccccc-ccccccchHHHHHHHHHHhhCChhhCCCHHHHHhCCccC
Confidence 011 1111111111111 111122345677899999999999999999999998874
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-32 Score=274.86 Aligned_cols=227 Identities=25% Similarity=0.414 Sum_probs=158.4
Q ss_pred cCCcCcceeecccCeEEEEEEeC--CCc--eEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP--SKE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~--~~~--~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
++|+..+.||+|+||.||+|++. ++. .||||++....... ....+.+.+|++++++++||||+++++++.+.. .
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQ-PEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC---------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCC-HHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 57888999999999999999853 233 58999886543222 234567999999999999999999999998765 8
Q ss_pred EEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
++||||+++|+|.+.+.... ...|.||||+||+++.++.+||+|||+++......
T Consensus 96 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~ 175 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQND 175 (291)
T ss_dssp EEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-C
T ss_pred eeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCEEEccccccccccccc
Confidence 89999999999988775421 11234999999999999999999999998765433
Q ss_pred CC---cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 552 SN---WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 552 ~~---~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
.. .....||+.|+||| ++.++|||||||++|||+| |+.||..... .......... ....+.+ .
T Consensus 176 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~----~~~~~~~~~~--~~~~~~~-~ 248 (291)
T 1u46_A 176 DHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG----SQILHKIDKE--GERLPRP-E 248 (291)
T ss_dssp CEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH----HHHHHHHHTS--CCCCCCC-T
T ss_pred cchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCH----HHHHHHHHcc--CCCCCCC-c
Confidence 21 22346788999999 4678999999999999999 9999853321 1111111011 1111111 1
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
. ....+.+++.+||+.+|++|||+.++++.|....
T Consensus 249 ~---~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~ 283 (291)
T 1u46_A 249 D---CPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQ 283 (291)
T ss_dssp T---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred C---cCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhC
Confidence 1 1234677888999999999999999999987654
|
| >3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=286.48 Aligned_cols=232 Identities=19% Similarity=0.264 Sum_probs=166.9
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc------CCCCeeEEEEEEEeC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI------RHRNIVKFYGFCSHA 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l------~H~niv~~~g~~~~~ 493 (667)
.+|+..+.||+|+||.||+|... +++.||||++... ....+.+.+|++++..+ .|+||+++++++...
T Consensus 97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-----~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~ 171 (429)
T 3kvw_A 97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-----KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFR 171 (429)
T ss_dssp TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-----HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEET
T ss_pred CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-----cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccC
Confidence 46888999999999999999764 5788999998642 23345688899888877 577999999999999
Q ss_pred CceEEEEEecCCCChHHHhccccC--------------------------CcccccccCCeeecCCCc--eEEecccccc
Q 042735 494 RHSILIYEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDLEHK--AHVSDFGIAK 545 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~~~~--~kl~DFGla~ 545 (667)
...++||||+. |+|.+.+..... ..|.||||+|||++.++. +||+|||+++
T Consensus 172 ~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~ 250 (429)
T 3kvw_A 172 NHICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSC 250 (429)
T ss_dssp TEEEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred CeEEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceEEeecccce
Confidence 99999999997 688877654321 123499999999999887 9999999997
Q ss_pred cccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC-----------CChhhhhh--
Q 042735 546 FLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL-----------PSPSVINM-- 606 (667)
Q Consensus 546 ~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~-----------~~~~~~~~-- 606 (667)
..... ....+||+.|+||| |+.++|||||||++|||+||+.||....... +.......
T Consensus 251 ~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~~~l~~i~~~~~~p~~~~~~~~~ 327 (429)
T 3kvw_A 251 YEHQR---VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLDASK 327 (429)
T ss_dssp ETTCC---CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTBT
T ss_pred ecCCc---ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHhhh
Confidence 64432 33568999999999 7889999999999999999999986322100 00000000
Q ss_pred hhccccCC-----------------------------CCCCCCCchHHH-----HHHHHHHHHhccccCCCCCCCHHHHH
Q 042735 607 RLDEMLDP-----------------------------RLPPPSPDVQGK-----LISIMEVAFSCLDVSPESRPTMQTIT 652 (667)
Q Consensus 607 ~~~~~~~~-----------------------------~~~~~~~~~~~~-----~~~~~~~~~~Cl~~~p~~RPt~~ev~ 652 (667)
.....++. ..++........ ...+.+++.+||+.||++|||++|++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rpta~e~L 407 (429)
T 3kvw_A 328 RAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQAL 407 (429)
T ss_dssp THHHHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred hhhhccCCCCCcccccccccccccccccccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCCCHHHHh
Confidence 00000000 000111111110 23467899999999999999999999
Q ss_pred HHHHHhhhh
Q 042735 653 QQLLFSLVY 661 (667)
Q Consensus 653 ~~l~~~~~~ 661 (667)
++.|+....
T Consensus 408 ~Hpw~~~~~ 416 (429)
T 3kvw_A 408 RHPWLRRRL 416 (429)
T ss_dssp TSTTTC---
T ss_pred CChhhccCC
Confidence 999987543
|
| >3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-32 Score=285.99 Aligned_cols=232 Identities=23% Similarity=0.291 Sum_probs=162.7
Q ss_pred HHcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC----
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA---- 493 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~---- 493 (667)
..++|...+.||+|+||.||+|.. .+++.||||++..... ...+|++++++++|||||++++++...
T Consensus 5 ~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~--------~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~ 76 (383)
T 3eb0_A 5 SSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR--------YKNRELDIMKVLDHVNIIKLVDYFYTTGDEE 76 (383)
T ss_dssp -CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT--------SCCHHHHHHTTCCCTTBCCEEEEEEEC----
T ss_pred ccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc--------hHHHHHHHHHHcCCCCccchhheeeecCccc
Confidence 456899999999999999999976 5688999998864321 133799999999999999999998543
Q ss_pred ----------------------------------CceEEEEEecCCCChHHHhcc----c--------------------
Q 042735 494 ----------------------------------RHSILIYEYLKRGSLATNLSN----D-------------------- 515 (667)
Q Consensus 494 ----------------------------------~~~~lv~ey~~~g~L~~~l~~----~-------------------- 515 (667)
...++||||++ |+|.+.+.. .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~ 155 (383)
T 3eb0_A 77 PKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVG 155 (383)
T ss_dssp ---------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 34889999999 576655432 1
Q ss_pred ----cCCcccccccCCeeec-CCCceEEecccccccccCCCCCcccccccccccCCC-------CCCCchHHHHHHHHHH
Q 042735 516 ----AAAEELDISSKNVLLD-LEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALE 583 (667)
Q Consensus 516 ----~~~~~~dlk~~NiLld-~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~E 583 (667)
....|.||||+|||++ .++.+||+|||+|+....... .....||+.|+||| |+.++||||+||++||
T Consensus 156 ~LH~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~e 234 (383)
T 3eb0_A 156 FIHSLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP-SVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGE 234 (383)
T ss_dssp HHHTTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC-CCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHH
T ss_pred HHHHCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC-CcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHH
Confidence 1122459999999998 689999999999987654332 34467899999998 5778999999999999
Q ss_pred HHhCCCCCCCCccCCCChhhhh---------h-hh-ccccCCCCCCCC-CchH-----HHHHHHHHHHHhccccCCCCCC
Q 042735 584 VIKGKHPRGFVSSILPSPSVIN---------M-RL-DEMLDPRLPPPS-PDVQ-----GKLISIMEVAFSCLDVSPESRP 646 (667)
Q Consensus 584 lltG~~p~~~~~~~~~~~~~~~---------~-~~-~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~Cl~~~p~~RP 646 (667)
|++|+.||...........+.. . .. ........+... .... .....+.+++.+||+.||++||
T Consensus 235 ll~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ 314 (383)
T 3eb0_A 235 LILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRI 314 (383)
T ss_dssp HHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSC
T ss_pred HHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCC
Confidence 9999999864321100000000 0 00 000000011000 0000 0122467888999999999999
Q ss_pred CHHHHHHHHHHhhh
Q 042735 647 TMQTITQQLLFSLV 660 (667)
Q Consensus 647 t~~ev~~~l~~~~~ 660 (667)
|+.|++++.||...
T Consensus 315 t~~e~l~hp~f~~~ 328 (383)
T 3eb0_A 315 NPYEAMAHPFFDHL 328 (383)
T ss_dssp CHHHHHTSGGGHHH
T ss_pred CHHHHhcCHHHHHH
Confidence 99999999998754
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=299.62 Aligned_cols=224 Identities=24% Similarity=0.394 Sum_probs=165.0
Q ss_pred cCCcCcceeecccCeEEEEEEeCC----CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS----KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~----~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
++|+..+.||+|+||.||+|.+.. +..+|||++.... .....+.|.+|+.++++++|||||+++|++. .+..
T Consensus 390 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~ 465 (656)
T 2j0j_A 390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCT---SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV 465 (656)
T ss_dssp GGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTT---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSC
T ss_pred ccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccC---CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCce
Confidence 567788899999999999998743 3468999876432 2234567999999999999999999999985 4568
Q ss_pred EEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
++||||+++|+|.+++.... ...|.||||+|||++.++.+||+|||+++......
T Consensus 466 ~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~ 545 (656)
T 2j0j_A 466 WIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 545 (656)
T ss_dssp EEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC--
T ss_pred EEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEEecCCCeecCCCc
Confidence 99999999999998876332 11234999999999999999999999998764432
Q ss_pred C-CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 552 S-NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 552 ~-~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
. ......||+.|+||| |+.++|||||||++|||++ |+.||..... ..... .+.....+..+...+
T Consensus 546 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~----~~~~~-~i~~~~~~~~~~~~~-- 618 (656)
T 2j0j_A 546 YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN----NDVIG-RIENGERLPMPPNCP-- 618 (656)
T ss_dssp --------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH----HHHHH-HHHHTCCCCCCTTCC--
T ss_pred ceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCH----HHHHH-HHHcCCCCCCCcccc--
Confidence 2 123346788999999 6789999999999999997 9999763221 11111 111111112222221
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..+.+++.+||+.||++|||+.|+++.|....
T Consensus 619 ----~~l~~li~~~l~~dP~~RPs~~el~~~L~~il 650 (656)
T 2j0j_A 619 ----PTLYSLMTKCWAYDPSRRPRFTELKAQLSTIL 650 (656)
T ss_dssp ----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 24667888999999999999999999987654
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=274.67 Aligned_cols=227 Identities=22% Similarity=0.335 Sum_probs=165.1
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC--CCCeeEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR--HRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~--H~niv~~~g~~~~~~~~~l 498 (667)
++|...+.||+|+||.||+|...+++.+|||++..... .....+.+.+|++++.+++ ||||+++++++.+.+..++
T Consensus 28 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 105 (313)
T 3cek_A 28 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA--DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 105 (313)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSC--CHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEE
T ss_pred ceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccc--cccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEE
Confidence 56888899999999999999988899999999865332 2334567999999999998 5999999999999999999
Q ss_pred EEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCC--
Q 042735 499 IYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-- 552 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-- 552 (667)
||| +.+|+|.+++..... ..|.||||+||++++ +.+||+|||+++.......
T Consensus 106 v~e-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~~~~~ 183 (313)
T 3cek_A 106 VME-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDTTSV 183 (313)
T ss_dssp EEC-CCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEET-TEEEECCCSSSCC--------
T ss_pred EEe-cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEEC-CeEEEeeccccccccCccccc
Confidence 999 677899887754321 123499999999974 8999999999987654322
Q ss_pred CcccccccccccCCCC-----------------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCC
Q 042735 553 NWSALVGTYRYVAPDY-----------------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPR 615 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE~-----------------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (667)
......||+.|+|||. +.++|||||||++|||+||+.||..... .... .....++.
T Consensus 184 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~---~~~~----~~~~~~~~ 256 (313)
T 3cek_A 184 VKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN---QISK----LHAIIDPN 256 (313)
T ss_dssp ------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCS---HHHH----HHHHHCTT
T ss_pred cccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHH---HHHH----HHHHHhcc
Confidence 1234579999999993 2368999999999999999999853221 0011 11122221
Q ss_pred CCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 616 LPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.....+.. ....+.+++.+||+.||++|||++|++++.|+...
T Consensus 257 ~~~~~~~~--~~~~l~~li~~~l~~dp~~Rps~~ell~h~~~~~~ 299 (313)
T 3cek_A 257 HEIEFPDI--PEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQ 299 (313)
T ss_dssp SCCCCCCC--SCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHCC
T ss_pred cccCCccc--chHHHHHHHHHHccCCcccCcCHHHHhcCccccCC
Confidence 11111110 01246678889999999999999999999998754
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=281.34 Aligned_cols=214 Identities=16% Similarity=0.193 Sum_probs=160.6
Q ss_pred cCCcCcceeecccCeEEEEEE------eCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC---CCCeeEEEEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAE------LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR---HRNIVKFYGFCS 491 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~------~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~---H~niv~~~g~~~ 491 (667)
++|...+.||+|+||.||+|. ...++.||||++... ...++.+|++++.+++ |+||+++++++.
T Consensus 65 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-------~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~ 137 (365)
T 3e7e_A 65 KLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA-------NPWEFYIGTQLMERLKPSMQHMFMKFYSAHL 137 (365)
T ss_dssp SEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC-------CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEE
T ss_pred EEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC-------ChhHHHHHHHHHHHhhhhhhhhhhhhheeee
Confidence 568888999999999999993 456788999998642 2346788888888887 999999999999
Q ss_pred eCCceEEEEEecCCCChHHHhcc------cc-----------------------CCcccccccCCeeecC----------
Q 042735 492 HARHSILIYEYLKRGSLATNLSN------DA-----------------------AAEELDISSKNVLLDL---------- 532 (667)
Q Consensus 492 ~~~~~~lv~ey~~~g~L~~~l~~------~~-----------------------~~~~~dlk~~NiLld~---------- 532 (667)
..+..++||||+++|+|.+++.. .. ...|.||||+|||++.
T Consensus 138 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~ 217 (365)
T 3e7e_A 138 FQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDD 217 (365)
T ss_dssp CSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC-----
T ss_pred cCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCcccccc
Confidence 99999999999999999998852 11 1123499999999998
Q ss_pred -CCceEEecccccccccCC--CCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhh
Q 042735 533 -EHKAHVSDFGIAKFLKPD--SSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV 603 (667)
Q Consensus 533 -~~~~kl~DFGla~~~~~~--~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~ 603 (667)
++.+||+|||+|+..... ....+..+||+.||||| |+.++|||||||++|||+||+.||.....
T Consensus 218 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~------- 290 (365)
T 3e7e_A 218 LSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEG------- 290 (365)
T ss_dssp -CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEET-------
T ss_pred ccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCC-------
Confidence 899999999999765422 22345578999999999 67899999999999999999999742111
Q ss_pred hhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCC-CCHHHHHHHHHH
Q 042735 604 INMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESR-PTMQTITQQLLF 657 (667)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~R-Pt~~ev~~~l~~ 657 (667)
.. .......... +. ...+.+++..|++.+|.+| |+++++.+.+..
T Consensus 291 ~~----~~~~~~~~~~-~~----~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~ 336 (365)
T 3e7e_A 291 GE----CKPEGLFRRL-PH----LDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKK 336 (365)
T ss_dssp TE----EEECSCCTTC-SS----HHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHH
T ss_pred Cc----eeechhcccc-Cc----HHHHHHHHHHHcCCCCCCcchHHHHHHHHHHH
Confidence 00 0011111111 11 1134567779999999988 567777665554
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=287.77 Aligned_cols=223 Identities=21% Similarity=0.307 Sum_probs=159.5
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~lv 499 (667)
.+|...+.||+|+||.||.....+++.||||++..... ..+.+|+++++++ +|||||++++++.+....++|
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~-------~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv 96 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF-------SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIA 96 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE-------EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEE
T ss_pred EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH-------HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEE
Confidence 45788889999999997766667788999999864321 1256899999999 799999999999999999999
Q ss_pred EEecCCCChHHHhccccC-------------------------CcccccccCCeeecC-----CCceEEecccccccccC
Q 042735 500 YEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDL-----EHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~-----~~~~kl~DFGla~~~~~ 549 (667)
|||++ |+|.+.+..... ..|.||||+|||++. ...+||+|||+|+....
T Consensus 97 ~E~~~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~ 175 (432)
T 3p23_A 97 IELCA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAV 175 (432)
T ss_dssp EECCS-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC--
T ss_pred EECCC-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccC
Confidence 99997 589887754321 123499999999943 34688999999987654
Q ss_pred CC---CCcccccccccccCCCC---------CCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCC
Q 042735 550 DS---SNWSALVGTYRYVAPDY---------RKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRL 616 (667)
Q Consensus 550 ~~---~~~~~~~Gt~~y~aPE~---------~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (667)
.. ...+..+||+.|+|||. +.++|||||||++|||+| |+.||+.... ....... .......
T Consensus 176 ~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~-----~~~~~~~-~~~~~~~ 249 (432)
T 3p23_A 176 GRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ-----RQANILL-GACSLDC 249 (432)
T ss_dssp ----------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTT-----HHHHHHT-TCCCCTT
T ss_pred CCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhH-----HHHHHHh-ccCCccc
Confidence 32 12345679999999993 347899999999999999 8888742211 1111110 1111111
Q ss_pred CCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
..+. ......+.+++.+||+.||++|||++||+++.||...
T Consensus 250 ~~~~---~~~~~~~~~li~~~L~~dP~~Rps~~evl~hp~f~~~ 290 (432)
T 3p23_A 250 LHPE---KHEDVIARELIEKMIAMDPQKRPSAKHVLKHPFFWSL 290 (432)
T ss_dssp SCTT---CHHHHHHHHHHHHHSCSSGGGSCCHHHHHTSTTTCCH
T ss_pred cCcc---ccccHHHHHHHHHHHhCCHhhCCCHHHHHhCccccCh
Confidence 1111 1122346688899999999999999999999888643
|
| >1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=285.89 Aligned_cols=229 Identities=19% Similarity=0.263 Sum_probs=165.6
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC--------CCCeeEEEEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR--------HRNIVKFYGFCS 491 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~--------H~niv~~~g~~~ 491 (667)
++|...+.||+|+||.||+|+. .+++.||||++... ....+.+.+|++++++++ |||||++++++.
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~ 111 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-----EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFK 111 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-----HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEE
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-----CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeeccee
Confidence 5788999999999999999976 55788999998642 234567899999999996 788999999997
Q ss_pred ----eCCceEEEEEecCCCChHHHhccc--------------------------c-CCcccccccCCeeecCCC------
Q 042735 492 ----HARHSILIYEYLKRGSLATNLSND--------------------------A-AAEELDISSKNVLLDLEH------ 534 (667)
Q Consensus 492 ----~~~~~~lv~ey~~~g~L~~~l~~~--------------------------~-~~~~~dlk~~NiLld~~~------ 534 (667)
.....++||||+. |++.+.+... . ...|.||||+|||++.++
T Consensus 112 ~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~~~~~~~ 190 (397)
T 1wak_A 112 ISGVNGTHICMVFEVLG-HHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRL 190 (397)
T ss_dssp EEETTEEEEEEEECCCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCHHHHHHH
T ss_pred ecCCCCceEEEEEeccC-ccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccchhhhhh
Confidence 5567899999994 5554443211 1 234569999999999775
Q ss_pred -------------------------------------------ceEEecccccccccCCCCCcccccccccccCCC----
Q 042735 535 -------------------------------------------KAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD---- 567 (667)
Q Consensus 535 -------------------------------------------~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE---- 567 (667)
.+||+|||+++..... .+..+||+.|+|||
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~---~~~~~gt~~y~aPE~~~~ 267 (397)
T 1wak_A 191 AAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH---FTEDIQTRQYRSLEVLIG 267 (397)
T ss_dssp HHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC---SCSCCSCGGGCCHHHHHT
T ss_pred hhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc---CccCCCCCcccCChhhcC
Confidence 7999999999876432 33467999999999
Q ss_pred --CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh-hhhcc------------------ccCC--------CCCC
Q 042735 568 --YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN-MRLDE------------------MLDP--------RLPP 618 (667)
Q Consensus 568 --~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~-~~~~~------------------~~~~--------~~~~ 618 (667)
|+.++|||||||++|||+||+.||.............. ..... .... ...+
T Consensus 268 ~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (397)
T 1wak_A 268 SGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKP 347 (397)
T ss_dssp SCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCC
T ss_pred CCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCC
Confidence 68899999999999999999999864322111000000 00000 0000 0000
Q ss_pred C---------CCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 619 P---------SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 619 ~---------~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
. ..........+.+++.+||+.||++|||++|++++.||.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~ 396 (397)
T 1wak_A 348 WGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLN 396 (397)
T ss_dssp CCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTSGGGG
T ss_pred cchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhCcccc
Confidence 0 001123345678899999999999999999999998874
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=277.31 Aligned_cols=221 Identities=20% Similarity=0.233 Sum_probs=150.9
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEe------
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSH------ 492 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~------ 492 (667)
.+|...+.||+|+||.||+|+. .+++.||||++... .....+.+.+|+.++.++. |||||++++++..
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~ 103 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN----EEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESD 103 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES----SHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTST
T ss_pred ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC----chHHHHHHHHHHHHHHHhccCCChhhccccccccccccc
Confidence 4788889999999999999986 46889999987432 2334567899999999996 9999999999943
Q ss_pred --CCceEEEEEecCCCChHHHhcc---------------------------ccC--CcccccccCCeeecCCCceEEecc
Q 042735 493 --ARHSILIYEYLKRGSLATNLSN---------------------------DAA--AEELDISSKNVLLDLEHKAHVSDF 541 (667)
Q Consensus 493 --~~~~~lv~ey~~~g~L~~~l~~---------------------------~~~--~~~~dlk~~NiLld~~~~~kl~DF 541 (667)
....++||||+. |+|.+.+.. ... ..|.||||+|||++.++.+||+||
T Consensus 104 ~~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl~Df 182 (337)
T 3ll6_A 104 TGQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDF 182 (337)
T ss_dssp TSSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEEBCCC
T ss_pred cCCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEEEecC
Confidence 345789999997 688765532 012 446699999999999999999999
Q ss_pred cccccccCCCCC------------cccccccccccCCCC---------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCC
Q 042735 542 GIAKFLKPDSSN------------WSALVGTYRYVAPDY---------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPS 600 (667)
Q Consensus 542 Gla~~~~~~~~~------------~~~~~Gt~~y~aPE~---------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~ 600 (667)
|+++........ .....||+.|+|||. +.++|||||||++|||+||+.||.......
T Consensus 183 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~-- 260 (337)
T 3ll6_A 183 GSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR-- 260 (337)
T ss_dssp TTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC---------
T ss_pred ccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHH--
Confidence 999876543211 114569999999993 347899999999999999999985322110
Q ss_pred hhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 601 PSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
. .........+...+. .+.+++.+||+.+|++|||++|++++|.....
T Consensus 261 --~----~~~~~~~~~~~~~~~------~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~ 308 (337)
T 3ll6_A 261 --I----VNGKYSIPPHDTQYT------VFHSLIRAMLQVNPEERLSIAEVVHQLQEIAA 308 (337)
T ss_dssp -----------CCCCTTCCSSG------GGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred --h----hcCcccCCcccccch------HHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 0 001111111111111 25578889999999999999999999987654
|
| >3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=271.15 Aligned_cols=225 Identities=16% Similarity=0.193 Sum_probs=165.4
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEE-EeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFC-SHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~-~~~~~~~l 498 (667)
++|+..+.||+|+||.||+|+. .+++.||||++..... .+.+.+|++++++++|++++..++++ .+.+..++
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~l 82 (296)
T 3uzp_A 9 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK------HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM 82 (296)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS------CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEE
T ss_pred cEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc------hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEE
Confidence 5788999999999999999986 6788999998764322 13588999999999998877666655 56677899
Q ss_pred EEEecCCCChHHHhcccc-------------------------CCcccccccCCeee---cCCCceEEecccccccccCC
Q 042735 499 IYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLL---DLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLl---d~~~~~kl~DFGla~~~~~~ 550 (667)
||||+ +|+|.+.+.... ...|.||||+||++ +.++.+||+|||+++.....
T Consensus 83 v~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~ 161 (296)
T 3uzp_A 83 VMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA 161 (296)
T ss_dssp EEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred EEEec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccc
Confidence 99999 999998875211 11234999999999 58899999999999876543
Q ss_pred CC-------CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCC--
Q 042735 551 SS-------NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPR-- 615 (667)
Q Consensus 551 ~~-------~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~-- 615 (667)
.. ......||+.|+||| ++.++|||||||++|||+||+.||............... ........
T Consensus 162 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~-~~~~~~~~~~ 240 (296)
T 3uzp_A 162 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERI-SEKKMSTPIE 240 (296)
T ss_dssp TTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHH-HHHHHHSCHH
T ss_pred ccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhh-cccccCCchH
Confidence 22 124567999999998 567899999999999999999998743322111111100 00000000
Q ss_pred -CCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 616 -LPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 616 -~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..... ...+.+++.+||+.+|++|||++||++.+....
T Consensus 241 ~~~~~~------~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~ 279 (296)
T 3uzp_A 241 VLCKGY------PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLF 279 (296)
T ss_dssp HHTTTS------CHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHH
T ss_pred HHHhhC------CHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHH
Confidence 00111 124677888999999999999999999887654
|
| >4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=271.41 Aligned_cols=230 Identities=16% Similarity=0.190 Sum_probs=163.8
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEE-EeCCceE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFC-SHARHSI 497 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~-~~~~~~~ 497 (667)
.++|+..+.||+|+||.||+|+. .+++.||||++..... ...+.+|++++.+++|++++..++++ .+.+..+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~ 81 (296)
T 4hgt_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK------HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNV 81 (296)
T ss_dssp ---CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEE
T ss_pred CCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc------chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceE
Confidence 46899999999999999999986 6688899998654321 12478899999999988877776665 5677889
Q ss_pred EEEEecCCCChHHHhcccc-------------------------CCcccccccCCeee---cCCCceEEecccccccccC
Q 042735 498 LIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLL---DLEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLl---d~~~~~kl~DFGla~~~~~ 549 (667)
+||||+ +|+|.+.+.... ...|.||||+|||+ +.++.+||+|||+++....
T Consensus 82 lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~ 160 (296)
T 4hgt_A 82 MVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD 160 (296)
T ss_dssp EEEECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred EEEEcc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccC
Confidence 999999 999998875211 11234999999999 7899999999999987654
Q ss_pred CCC-------CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCC
Q 042735 550 DSS-------NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRL 616 (667)
Q Consensus 550 ~~~-------~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (667)
... ......||+.|+||| ++.++|||||||++|||+||+.||................ ........
T Consensus 161 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~-~~~~~~~~ 239 (296)
T 4hgt_A 161 ARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERIS-EKKMSTPI 239 (296)
T ss_dssp TTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHH-HHHHHSCH
T ss_pred cccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhh-cccccchh
Confidence 322 123567999999998 5678999999999999999999987433222111111100 00000000
Q ss_pred CCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
+.... .....+.+++.+||+.+|++|||++||++.+.....
T Consensus 240 ~~~~~---~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~ 280 (296)
T 4hgt_A 240 EVLCK---GYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH 280 (296)
T ss_dssp HHHTT---TSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHH
T ss_pred hhhhc---cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 00000 011256788889999999999999999998776543
|
| >3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=279.25 Aligned_cols=231 Identities=19% Similarity=0.285 Sum_probs=165.1
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc----
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH---- 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~---- 495 (667)
++|...+.||+|+||.||+|.. .+++.||||++..... .....+.+.+|+.++++++|||||++++++.....
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 101 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ--SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF 101 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTS--SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEeccccc--chHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccc
Confidence 4688889999999999999986 4688999999875432 22345678999999999999999999999987654
Q ss_pred --eEEEEEecCCCChHHHhccc----------------------cCCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 496 --SILIYEYLKRGSLATNLSND----------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 496 --~~lv~ey~~~g~L~~~l~~~----------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
.++||||++ |+|.+.+... ....|.||||+||+++.++.+||+|||+++.....
T Consensus 102 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~- 179 (353)
T 3coi_A 102 YDFYLVMPFMQ-TDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAE- 179 (353)
T ss_dssp CCCEEEEECCS-EEGGGTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEECSTTCTTC-----
T ss_pred eeEEEEecccc-CCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEEeecccccCCCCC-
Confidence 499999998 5776654321 11234599999999999999999999999865432
Q ss_pred CCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh-------------------
Q 042735 552 SNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN------------------- 605 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~------------------- 605 (667)
.+...||+.|+||| ++.++|||||||++|||+||+.||..............
T Consensus 180 --~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 257 (353)
T 3coi_A 180 --MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAK 257 (353)
T ss_dssp ------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHH
T ss_pred --ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHH
Confidence 23467899999999 46789999999999999999999864321100000000
Q ss_pred hhhccc---cCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 606 MRLDEM---LDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 606 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
...... ....+....+ .....+.+++.+||+.||++|||++|++++.||...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~ 312 (353)
T 3coi_A 258 SYIQSLPQTPRKDFTQLFP---RASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPF 312 (353)
T ss_dssp HHHHTSCBCSSCCTTTTCT---TSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTT
T ss_pred HHHHhCcCCCCccHHHhcC---CcCHHHHHHHHHHcCCCcccCCCHHHHhcCcchhhc
Confidence 000000 0001111011 112356788889999999999999999999998643
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=276.44 Aligned_cols=227 Identities=19% Similarity=0.234 Sum_probs=144.1
Q ss_pred HcCCcCc-ceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHH-HHHHhcCCCCeeEEEEEEEe----
Q 042735 420 INDFDAK-YCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEI-EALTKIRHRNIVKFYGFCSH---- 492 (667)
Q Consensus 420 ~~~f~~~-~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~-~~l~~l~H~niv~~~g~~~~---- 492 (667)
.++|... +.||+|+||.||+|... +++.||||++... .. ..+|+ ..+..++||||+++++++..
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~----~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~ 97 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-----PK----ARQEVDHHWQASGGPHIVCILDVYENMHHG 97 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS-----HH----HHHHHHHHHHHTTSTTBCCEEEEEEEEETT
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc-----HH----HHHHHHHHHHhcCCCChHHHHHHHhhccCC
Confidence 3577774 46999999999999875 6889999997541 11 22233 34567789999999999976
Q ss_pred CCceEEEEEecCCCChHHHhccccC--------------------------CcccccccCCeeecC---CCceEEecccc
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDL---EHKAHVSDFGI 543 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~---~~~~kl~DFGl 543 (667)
....++||||+++|+|.+++..... ..|.||||+||+++. ++.+||+|||+
T Consensus 98 ~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~ 177 (336)
T 3fhr_A 98 KRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGF 177 (336)
T ss_dssp EEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTT
T ss_pred CceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEecccc
Confidence 4458999999999999998865321 113499999999986 45599999999
Q ss_pred cccccCCCCCcccccccccccCCCC------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCC
Q 042735 544 AKFLKPDSSNWSALVGTYRYVAPDY------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617 (667)
Q Consensus 544 a~~~~~~~~~~~~~~Gt~~y~aPE~------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (667)
++..... ......||+.|+|||. +.++|||||||++|||+||+.||................... ....+
T Consensus 178 ~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~--~~~~~ 253 (336)
T 3fhr_A 178 AKETTQN--ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLG--QYGFP 253 (336)
T ss_dssp CEEC------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-----------------------CCC
T ss_pred ceecccc--ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhcc--ccccC
Confidence 9865432 2345678999999994 457999999999999999999985332211100000000000 01111
Q ss_pred CCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.+ ........+.+++.+||+.||++|||++|++++.|+....
T Consensus 254 ~~--~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~ 295 (336)
T 3fhr_A 254 NP--EWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPWINQSM 295 (336)
T ss_dssp TT--TSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTGG
T ss_pred ch--hhccCCHHHHHHHHHHCCCChhHCcCHHHHhcCccccccc
Confidence 11 1111223466788899999999999999999999997644
|
| >2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-32 Score=285.58 Aligned_cols=228 Identities=16% Similarity=0.218 Sum_probs=165.5
Q ss_pred cCCcCcceeecccCeEEEEEEeCC---------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeE------
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS---------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK------ 485 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~---------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~------ 485 (667)
++|...+.||+|+||.||+|+... +..||||.+... +.+.+|++++++++|||||+
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~---------~~~~~E~~~l~~l~h~niv~~~~~~~ 112 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD---------GRLFNEQNFFQRAAKPLQVNKWKKLY 112 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT---------STHHHHHHHHHHHCCHHHHHHHHHHT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc---------chHHHHHHHHHHhcccchhhhhhhhc
Confidence 578889999999999999998754 788999997642 24789999999999999998
Q ss_pred ---------EEEEEEe-CCceEEEEEecCCCChHHHhccc--c------------------------CCcccccccCCee
Q 042735 486 ---------FYGFCSH-ARHSILIYEYLKRGSLATNLSND--A------------------------AAEELDISSKNVL 529 (667)
Q Consensus 486 ---------~~g~~~~-~~~~~lv~ey~~~g~L~~~l~~~--~------------------------~~~~~dlk~~NiL 529 (667)
+++++.. ....++||||+ +|+|.+++... . ...|.||||+||+
T Consensus 113 ~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl 191 (352)
T 2jii_A 113 STPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIF 191 (352)
T ss_dssp TCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEE
T ss_pred cCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEE
Confidence 6788876 67889999999 99999988643 1 1123499999999
Q ss_pred ecCCC--ceEEecccccccccCCCC-------CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCC
Q 042735 530 LDLEH--KAHVSDFGIAKFLKPDSS-------NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFV 594 (667)
Q Consensus 530 ld~~~--~~kl~DFGla~~~~~~~~-------~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~ 594 (667)
++.++ .+||+|||+++....... ......||+.|+||| |+.++|||||||++|||+||+.||...
T Consensus 192 ~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~ 271 (352)
T 2jii_A 192 VDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNC 271 (352)
T ss_dssp EETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGG
T ss_pred EcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccC
Confidence 99998 999999999986543221 123458999999998 567899999999999999999998633
Q ss_pred ccCCCChhhhhhhhcccc--CCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 595 SSILPSPSVINMRLDEML--DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
... ........ .... .+.+.............+.+++.+||+.||++|||++||++.|......
T Consensus 272 ~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~ 337 (352)
T 2jii_A 272 LPN--TEDIMKQK-QKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQD 337 (352)
T ss_dssp TTC--HHHHHHHH-HHHHHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred CcC--HHHHHHHH-HhccCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHh
Confidence 210 00111100 0000 0111111100001123567788899999999999999999998876543
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-31 Score=283.94 Aligned_cols=230 Identities=22% Similarity=0.275 Sum_probs=160.0
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC------
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA------ 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~------ 493 (667)
.+|+..+.||+|+||.||+|+.. +++.||||++..... .+.+|++++++++|||||++++++...
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~--------~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~ 125 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR--------FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDE 125 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT--------SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch--------hHHHHHHHHHHcCCCCccceeeEEeccCCCCcc
Confidence 35788899999999999999875 588999998854321 234799999999999999999998642
Q ss_pred CceEEEEEecCCCChHHHhcc----------------------------ccCCcccccccCCeeecCC-CceEEeccccc
Q 042735 494 RHSILIYEYLKRGSLATNLSN----------------------------DAAAEELDISSKNVLLDLE-HKAHVSDFGIA 544 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~----------------------------~~~~~~~dlk~~NiLld~~-~~~kl~DFGla 544 (667)
...++||||+++ ++.+.+.. .....|.||||+|||++.+ +.+||+|||++
T Consensus 126 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a 204 (420)
T 1j1b_A 126 VYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSA 204 (420)
T ss_dssp EEEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred eeEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEeccchhh
Confidence 236799999996 44333221 0112345999999999965 67899999999
Q ss_pred ccccCCCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh-------hhhc-
Q 042735 545 KFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN-------MRLD- 609 (667)
Q Consensus 545 ~~~~~~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~-------~~~~- 609 (667)
+....... ....+||+.|+||| |+.++|||||||++|||++|+.||...........+.. ..+.
T Consensus 205 ~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~ 283 (420)
T 1j1b_A 205 KQLVRGEP-NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIRE 283 (420)
T ss_dssp EECCTTCC-CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHH
T ss_pred hhcccCCC-ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHh
Confidence 97654332 23467999999999 56789999999999999999999864321100000000 0000
Q ss_pred ---cccCCCCCCCCC-chH-----HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 610 ---EMLDPRLPPPSP-DVQ-----GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 610 ---~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
...+..++.... ... .....+.+++.+||+.||++|||+.|+++|.||...
T Consensus 284 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp~f~~~ 343 (420)
T 1j1b_A 284 MNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDEL 343 (420)
T ss_dssp HCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGG
T ss_pred hChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCCHhhccc
Confidence 000011111000 000 112356788899999999999999999999999654
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-30 Score=275.77 Aligned_cols=276 Identities=23% Similarity=0.190 Sum_probs=220.3
Q ss_pred CCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEE
Q 042735 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLA 80 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~ 80 (667)
+++|+.|+|++|.+++. | .+..+++|++|+|++|++++. | ++.+++|++|+|++|++++. | ++. .+|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 57899999999999975 5 688999999999999999874 4 88999999999999999864 3 555 5699999
Q ss_pred cccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCC
Q 042735 81 LENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFG 160 (667)
Q Consensus 81 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 160 (667)
|++|.+++. + +..+++|+.|++++|++++. + +.++++|+.|++++|...+.+ .++.+++|++|++++|.+.+
T Consensus 113 L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 113 CDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 999999874 3 78889999999999999874 3 788999999999999655554 47888899999999998876
Q ss_pred ccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccC
Q 042735 161 EIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240 (667)
Q Consensus 161 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 240 (667)
+| +..+++|+.|++++|.+++. .++.+++|+.|++++|++.+ +| ++.+++|+.|++++|++.+..+..+.+
T Consensus 185 -l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~ 255 (457)
T 3bz5_A 185 -LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSK 255 (457)
T ss_dssp -CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred -ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence 34 77888999999999988864 37888899999999998887 45 788889999999999888765555544
Q ss_pred CC-------CCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchh--------hhcCCCCCEEECcCCCCCC
Q 042735 241 LT-------KLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKE--------LGKLVQLSELELSHNFLGR 304 (667)
Q Consensus 241 l~-------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~--------l~~l~~L~~L~l~~n~l~~ 304 (667)
+. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|.. +..+++|++|++++|.+++
T Consensus 256 L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 256 LTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred CCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence 44 45666666666666555 456788888888888777766642 4455677888888888766
|
| >1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-31 Score=275.59 Aligned_cols=238 Identities=19% Similarity=0.321 Sum_probs=165.9
Q ss_pred HHcCCcCcceeecccCeEEEEEEe--CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc---CCCCeeEEEEEEE--
Q 042735 419 AINDFDAKYCIGSGRHGSVYRAEL--PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI---RHRNIVKFYGFCS-- 491 (667)
Q Consensus 419 ~~~~f~~~~~lg~g~~g~vy~~~~--~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l---~H~niv~~~g~~~-- 491 (667)
+.++|+..+.||+|+||.||+|+. .++..||||++....... .....+.+|+++++++ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~ 86 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE--GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS 86 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTT--SCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEE
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccc--cCCchhhHHHHHHHhhhccCCCCeEeeeeeeeec
Confidence 346899999999999999999987 457889999875322111 1112466777777666 8999999999997
Q ss_pred ---eCCceEEEEEecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEeccc
Q 042735 492 ---HARHSILIYEYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFG 542 (667)
Q Consensus 492 ---~~~~~~lv~ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFG 542 (667)
.....++||||++ |+|.+.+.... ...|.||||+||+++.++.+||+|||
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~~~kl~Dfg 165 (326)
T 1blx_A 87 RTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFG 165 (326)
T ss_dssp ECSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCC
T ss_pred ccCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCCCEEEecCc
Confidence 4567899999998 69988775321 11234999999999999999999999
Q ss_pred ccccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh--------h-
Q 042735 543 IAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM--------R- 607 (667)
Q Consensus 543 la~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~--------~- 607 (667)
+++...... ......||+.|+||| |+.++|||||||++|||+||+.||...........+... .
T Consensus 166 ~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~ 244 (326)
T 1blx_A 166 LARIYSFQM-ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWP 244 (326)
T ss_dssp SCCCCCGGG-GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSC
T ss_pred ccccccCCC-CccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcccCc
Confidence 998654322 234467999999999 578899999999999999999998633211000000000 0
Q ss_pred -----hccccCCCCCCCCC-chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 608 -----LDEMLDPRLPPPSP-DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 608 -----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
...........+.. ........+.+++.+||+.||++|||+.|++++.|+...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~ 303 (326)
T 1blx_A 245 RDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDL 303 (326)
T ss_dssp TTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTC
T ss_pred cccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcCcccccc
Confidence 00000000000000 000112245678889999999999999999999998654
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-31 Score=270.63 Aligned_cols=229 Identities=20% Similarity=0.285 Sum_probs=151.4
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||.||+|... +++.||||++..... .....+.+.++..+++.++||||+++++++.+.+..++
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~l 101 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGN--KEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFI 101 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSC--HHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEeccccc--chHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEE
Confidence 468888999999999999999875 688999999865432 22223344455567888899999999999999999999
Q ss_pred EEEecCCCChHHHhc--------------------------cccCCcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 499 IYEYLKRGSLATNLS--------------------------NDAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 499 v~ey~~~g~L~~~l~--------------------------~~~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
||||+ ++.+..... ......|.||||+||+++.++.+||+|||+++......
T Consensus 102 v~e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~- 179 (318)
T 2dyl_A 102 AMELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDK- 179 (318)
T ss_dssp EECCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTTC--------
T ss_pred EEecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCc-
Confidence 99999 344433221 11123456999999999999999999999998654332
Q ss_pred CcccccccccccCCCC-----------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 553 NWSALVGTYRYVAPDY-----------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE~-----------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
......||+.|+|||. +.++|||||||++|||+||+.||..... ......... ....+..+...
T Consensus 180 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---~~~~~~~~~-~~~~~~~~~~~- 254 (318)
T 2dyl_A 180 AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKT---DFEVLTKVL-QEEPPLLPGHM- 254 (318)
T ss_dssp -------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCS---HHHHHHHHH-HSCCCCCCSSS-
T ss_pred cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCc---cHHHHHHHh-ccCCCCCCccC-
Confidence 2234579999999993 4579999999999999999999863211 011111111 11111122111
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
. ....+.+++.+||+.||++|||++|++++.|+...
T Consensus 255 ~---~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~ 290 (318)
T 2dyl_A 255 G---FSGDFQSFVKDCLTKDHRKRPKYNKLLEHSFIKRY 290 (318)
T ss_dssp C---CCHHHHHHHHHHTCSCTTTSCCHHHHTTSHHHHHH
T ss_pred C---CCHHHHHHHHHHccCChhHCcCHHHHhhCHHHHhc
Confidence 1 11246678889999999999999999999988643
|
| >1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-31 Score=273.51 Aligned_cols=226 Identities=20% Similarity=0.294 Sum_probs=168.7
Q ss_pred cCCcCcceeecccCeEEEEEEe--CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCC------eeEEEEEEEe
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL--PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN------IVKFYGFCSH 492 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~--~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n------iv~~~g~~~~ 492 (667)
++|+..+.||+|+||.||+|.. .++..||||++... ....+.+.+|++++.+++|++ ++++++++.+
T Consensus 14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-----~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~ 88 (339)
T 1z57_A 14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-----DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH 88 (339)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-----HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE
T ss_pred CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-----CchhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc
Confidence 5788899999999999999976 35788999998642 234567889999999987765 9999999999
Q ss_pred CCceEEEEEecCCCChHHHhccccC--------------------------CcccccccCCeeecC--------------
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDAA--------------------------AEELDISSKNVLLDL-------------- 532 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~~--------------------------~~~~dlk~~NiLld~-------------- 532 (667)
.+..++||||+ +|+|.+.+..... ..|.||||+|||++.
T Consensus 89 ~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~ 167 (339)
T 1z57_A 89 HGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRD 167 (339)
T ss_dssp TTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC----CE
T ss_pred CCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccCCccccc
Confidence 99999999999 8899887754321 113499999999987
Q ss_pred -----CCceEEecccccccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCCh
Q 042735 533 -----EHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSP 601 (667)
Q Consensus 533 -----~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~ 601 (667)
++.+||+|||+++..... .....||+.|+||| |+.++|||||||++|||+||+.||.......
T Consensus 168 ~~~~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~--- 241 (339)
T 1z57_A 168 ERTLINPDIKVVDFGSATYDDEH---HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKE--- 241 (339)
T ss_dssp EEEESCCCEEECCCSSCEETTSC---CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHH---
T ss_pred cccccCCCceEeeCcccccCccc---cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHH---
Confidence 678999999999875432 23468999999999 6789999999999999999999986322100
Q ss_pred hhhhhhhccccCC--------------------CCCC-----------------CCCchHHHHHHHHHHHHhccccCCCC
Q 042735 602 SVINMRLDEMLDP--------------------RLPP-----------------PSPDVQGKLISIMEVAFSCLDVSPES 644 (667)
Q Consensus 602 ~~~~~~~~~~~~~--------------------~~~~-----------------~~~~~~~~~~~~~~~~~~Cl~~~p~~ 644 (667)
.. ........+ .+.. ...........+.+++.+||+.||++
T Consensus 242 -~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~ 319 (339)
T 1z57_A 242 -HL-AMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAK 319 (339)
T ss_dssp -HH-HHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTT
T ss_pred -HH-HHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCccc
Confidence 00 000000000 0000 00000122346778999999999999
Q ss_pred CCCHHHHHHHHHHhhh
Q 042735 645 RPTMQTITQQLLFSLV 660 (667)
Q Consensus 645 RPt~~ev~~~l~~~~~ 660 (667)
|||++|++++.||...
T Consensus 320 Rpt~~ell~hp~f~~~ 335 (339)
T 1z57_A 320 RITLREALKHPFFDLL 335 (339)
T ss_dssp SCCHHHHTTSGGGGGG
T ss_pred ccCHHHHhcCHHHHHH
Confidence 9999999999998654
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-32 Score=278.20 Aligned_cols=224 Identities=23% Similarity=0.348 Sum_probs=162.7
Q ss_pred HcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
.++|+..+.||+|+||.||+|.... .+|+|++....... ...+.|.+|+.++++++||||+++++++.+.+..++|
T Consensus 32 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv 107 (319)
T 2y4i_B 32 FEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNE--DQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAII 107 (319)
T ss_dssp CSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCC--CCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEE
T ss_pred HHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCH--HHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEE
Confidence 3578889999999999999998754 48999886542211 1224577899999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCC----
Q 042735 500 YEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD---- 550 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~---- 550 (667)
|||+++|+|.+.+..... ..|.||||+||+++ ++.+||+|||+++.....
T Consensus 108 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~ 186 (319)
T 2y4i_B 108 TSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGR 186 (319)
T ss_dssp CBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC---CCEECCCSCCC---------
T ss_pred eecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEe-CCCEEEeecCCccccccccccc
Confidence 999999999998865321 12349999999998 689999999998764321
Q ss_pred -CCCcccccccccccCCC---------------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCC
Q 042735 551 -SSNWSALVGTYRYVAPD---------------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDP 614 (667)
Q Consensus 551 -~~~~~~~~Gt~~y~aPE---------------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~ 614 (667)
........||+.|+||| |+.++|||||||++|||+||+.||..... ..... .......+
T Consensus 187 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~----~~~~~-~~~~~~~~ 261 (319)
T 2y4i_B 187 REDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPA----EAIIW-QMGTGMKP 261 (319)
T ss_dssp -CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCH----HHHHH-HHHTTCCC
T ss_pred cccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHH-HhccCCCC
Confidence 11223456999999998 24478999999999999999999863221 11111 11111122
Q ss_pred CCCC-CCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 615 RLPP-PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 615 ~~~~-~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.... ..+ ..+.+++.+||+.+|++|||++|+++.+....
T Consensus 262 ~~~~~~~~------~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~ 301 (319)
T 2y4i_B 262 NLSQIGMG------KEISDILLFCWAFEQEERPTFTKLMDMLEKLP 301 (319)
T ss_dssp CCCCSSCC------TTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC-
T ss_pred CCCcCCCC------HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHH
Confidence 2111 111 13567888999999999999999999987654
|
| >2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=277.35 Aligned_cols=165 Identities=22% Similarity=0.310 Sum_probs=135.3
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCC-----eeEEEEEEEe
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRN-----IVKFYGFCSH 492 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~n-----iv~~~g~~~~ 492 (667)
.++|+..+.||+|+||.||+|... +++.||||++... ....+++.+|++++..++ |++ ||++++++..
T Consensus 53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~ 127 (382)
T 2vx3_A 53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-----KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF 127 (382)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-----HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE
T ss_pred eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-----HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc
Confidence 468999999999999999999864 5788999998642 233456788999988886 554 9999999999
Q ss_pred CCceEEEEEecCCCChHHHhcccc----------------------------CCcccccccCCeeec--CCCceEEeccc
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDA----------------------------AAEELDISSKNVLLD--LEHKAHVSDFG 542 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~----------------------------~~~~~dlk~~NiLld--~~~~~kl~DFG 542 (667)
.+..++||||++ |+|.+.+.... ...|.||||+|||++ .++.+||+|||
T Consensus 128 ~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG 206 (382)
T 2vx3_A 128 RNHLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFG 206 (382)
T ss_dssp TTEEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCT
T ss_pred CCceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEecc
Confidence 999999999997 58877664321 123459999999994 57889999999
Q ss_pred ccccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCC
Q 042735 543 IAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGF 593 (667)
Q Consensus 543 la~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~ 593 (667)
+++..... .....||+.|+||| |+.++|||||||++|||+||+.||..
T Consensus 207 ~a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~ 260 (382)
T 2vx3_A 207 SSCQLGQR---IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSG 260 (382)
T ss_dssp TCEETTCC---CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred Cceecccc---cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99876432 23568999999999 67899999999999999999999863
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=272.44 Aligned_cols=276 Identities=22% Similarity=0.222 Sum_probs=237.4
Q ss_pred CCCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEE
Q 042735 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVL 79 (667)
Q Consensus 1 ~L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L 79 (667)
++++|+.|+|++|.++++ | +.++++|++|+|++|++++. | ++++++|++|++++|++++ +| ++. .+|+.|
T Consensus 62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L 132 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL 132 (457)
T ss_dssp GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence 368999999999999985 4 88999999999999999974 4 8999999999999999986 44 554 569999
Q ss_pred EcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccC
Q 042735 80 ALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFF 159 (667)
Q Consensus 80 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 159 (667)
++++|.+++. .+..+.+|+.|++++|...+.+ .+..+++|+.|++++|++++. + ++.+++|+.|++++|.+.
T Consensus 133 ~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 133 NCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp ECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCC
Confidence 9999999874 3788999999999999766665 488999999999999999874 4 889999999999999998
Q ss_pred CccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCc-------ccceeecccccccc
Q 042735 160 GEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLN-------SLTKLILRGNQLIG 232 (667)
Q Consensus 160 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-------~L~~L~L~~n~l~~ 232 (667)
+. .+..+++|+.|++++|++++ +| ++.+++|+.|++++|.+.+..+..+.++. +|+.|++++|.+.+
T Consensus 205 ~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 205 KL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI 278 (457)
T ss_dssp CC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred ee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCC
Confidence 75 48899999999999999998 55 88999999999999999987666666555 56777888887777
Q ss_pred cCcccccCCCCCCeeeccCCcCCccchhh--------hhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCC
Q 042735 233 HLPSEIGSLTKLEFLNLSTNRFSSLIPES--------LGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGR 304 (667)
Q Consensus 233 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--------~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~ 304 (667)
.+| ++.+++|+.|++++|...+.+|.. +.++++|+.|++++|++.+ ++ ++.+++|+.|++++|.+.+
T Consensus 279 ~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 279 YFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp EEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred ccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC
Confidence 666 578899999999999887766643 4556789999999999887 44 8899999999999999975
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=294.25 Aligned_cols=236 Identities=23% Similarity=0.250 Sum_probs=167.0
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe------
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH------ 492 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~------ 492 (667)
.++|...+.||+|+||.||+|.. .++..||||++.... .....+.|.+|++++++++|||||++++++..
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~---~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~ 89 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQEL---SPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAP 89 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCC---CHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCT
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccC---CHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccC
Confidence 46899999999999999999986 458889999886532 23345679999999999999999999999765
Q ss_pred CCceEEEEEecCCCChHHHhccccC---------------------------CcccccccCCeeecCCCc---eEEeccc
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDAA---------------------------AEELDISSKNVLLDLEHK---AHVSDFG 542 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~~---------------------------~~~~dlk~~NiLld~~~~---~kl~DFG 542 (667)
.+..++||||+++|+|.+++..... ..|.||||+||+++.++. +||+|||
T Consensus 90 ~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG 169 (676)
T 3qa8_A 90 NDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLG 169 (676)
T ss_dssp TSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred CCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCceeEEEcccc
Confidence 6778999999999999998865321 113499999999997765 9999999
Q ss_pred ccccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCc----cCCCC--hhhhhhhhcc
Q 042735 543 IAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVS----SILPS--PSVINMRLDE 610 (667)
Q Consensus 543 la~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~----~~~~~--~~~~~~~~~~ 610 (667)
+++...... ......||+.|+||| |+.++|||||||++|||+||+.||.... +.... ..........
T Consensus 170 ~a~~~~~~~-~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~ 248 (676)
T 3qa8_A 170 YAKELDQGE-LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYD 248 (676)
T ss_dssp CCCBTTSCC-CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCC
T ss_pred ccccccccc-ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhh
Confidence 998765433 234568999999999 5679999999999999999999985210 00000 0000000000
Q ss_pred ------ccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 611 ------MLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 611 ------~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
......+.+..........+.+++.+||+.||++|||++|++++.||..
T Consensus 249 ~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~ 303 (676)
T 3qa8_A 249 DLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQA 303 (676)
T ss_dssp CCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHH
T ss_pred hhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHH
Confidence 0111112221112223446778899999999999999999887777653
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=273.21 Aligned_cols=221 Identities=19% Similarity=0.334 Sum_probs=161.7
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCch--HHhHHHHHHHHHHHHhc----CCCCeeEEEEEEEe
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQ--IADQKEFFAEIEALTKI----RHRNIVKFYGFCSH 492 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~--~~~~~~~~~E~~~l~~l----~H~niv~~~g~~~~ 492 (667)
.++|...+.||+|+||.||+|+. .+++.||||++........ ......+.+|++++.++ +||||+++++++.+
T Consensus 30 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~ 109 (312)
T 2iwi_A 30 EAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFET 109 (312)
T ss_dssp ---CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC--
T ss_pred hhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEec
Confidence 46799999999999999999986 5678899999865322111 11223466899999998 89999999999999
Q ss_pred CCceEEEEEe-cCCCChHHHhccccC------------------------CcccccccCCeeec-CCCceEEeccccccc
Q 042735 493 ARHSILIYEY-LKRGSLATNLSNDAA------------------------AEELDISSKNVLLD-LEHKAHVSDFGIAKF 546 (667)
Q Consensus 493 ~~~~~lv~ey-~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld-~~~~~kl~DFGla~~ 546 (667)
.+..++|||| +.+|+|.+++..... ..|.||||+||+++ .++.+||+|||+++.
T Consensus 110 ~~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~ 189 (312)
T 2iwi_A 110 QEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSGAL 189 (312)
T ss_dssp ---CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEEEECCCSSCEE
T ss_pred CCeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeEEEEEcchhhh
Confidence 9999999999 899999988754321 12349999999999 899999999999987
Q ss_pred ccCCCCCcccccccccccCCCC-------CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCC
Q 042735 547 LKPDSSNWSALVGTYRYVAPDY-------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619 (667)
Q Consensus 547 ~~~~~~~~~~~~Gt~~y~aPE~-------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (667)
.... ......||+.|+|||. +.++|||||||++|||+||+.||..... ... . ....+..
T Consensus 190 ~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~------~~~----~--~~~~~~~ 255 (312)
T 2iwi_A 190 LHDE--PYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQE------ILE----A--ELHFPAH 255 (312)
T ss_dssp CCSS--CBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH------HHH----T--CCCCCTT
T ss_pred cccC--cccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHH------Hhh----h--ccCCccc
Confidence 6543 2345679999999992 3479999999999999999999853211 110 0 1112211
Q ss_pred CCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 620 ~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.+ ..+.+++.+||+.+|++|||++|++++.|+...
T Consensus 256 ~~------~~~~~li~~~l~~~p~~Rps~~e~l~~~~~~~~ 290 (312)
T 2iwi_A 256 VS------PDCCALIRRCLAPKPSSRPSLEEILLDPWMQTP 290 (312)
T ss_dssp SC------HHHHHHHHHHTCSSTTTSCCHHHHHHSTTTCC-
T ss_pred CC------HHHHHHHHHHccCChhhCcCHHHHhcChhhcCc
Confidence 11 246678889999999999999999999887643
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=276.89 Aligned_cols=221 Identities=21% Similarity=0.338 Sum_probs=167.9
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCc--hHHhHHHHHHHHHHHHhcC--CCCeeEEEEEEEeCCc
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSD--QIADQKEFFAEIEALTKIR--HRNIVKFYGFCSHARH 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~--~~~~~~~~~~E~~~l~~l~--H~niv~~~g~~~~~~~ 495 (667)
++|...+.||+|+||.||+|.. .+++.||||++....... .....+.+.+|+.++++++ ||||+++++++.+.+.
T Consensus 43 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~~ 122 (320)
T 3a99_A 43 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS 122 (320)
T ss_dssp TTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred CceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCCc
Confidence 5788899999999999999975 567889999886432211 0011234678999999996 5999999999999999
Q ss_pred eEEEEEecCC-CChHHHhccccC------------------------CcccccccCCeeec-CCCceEEecccccccccC
Q 042735 496 SILIYEYLKR-GSLATNLSNDAA------------------------AEELDISSKNVLLD-LEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 496 ~~lv~ey~~~-g~L~~~l~~~~~------------------------~~~~dlk~~NiLld-~~~~~kl~DFGla~~~~~ 549 (667)
.++||||+.+ ++|.+++..... ..|.||||+||+++ .++.+||+|||+++....
T Consensus 123 ~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~ 202 (320)
T 3a99_A 123 FVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKD 202 (320)
T ss_dssp EEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCS
T ss_pred EEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEEEeeCcccccccc
Confidence 9999999986 899887754211 12349999999999 789999999999987653
Q ss_pred CCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCc
Q 042735 550 DSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (667)
. ......||+.|+||| ++.++|||||||++|||+||+.||..... .. ... ...+...+
T Consensus 203 ~--~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~------~~----~~~--~~~~~~~~- 267 (320)
T 3a99_A 203 T--VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE------II----RGQ--VFFRQRVS- 267 (320)
T ss_dssp S--CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH------HH----HCC--CCCSSCCC-
T ss_pred c--cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhh------hh----ccc--ccccccCC-
Confidence 2 234567999999999 24578999999999999999999853211 00 010 01111111
Q ss_pred hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 623 VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 623 ~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
..+.+++.+||+.||++|||++|++++.|+....
T Consensus 268 -----~~~~~li~~~l~~dp~~Rps~~~ll~hp~~~~~~ 301 (320)
T 3a99_A 268 -----SECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVL 301 (320)
T ss_dssp -----HHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSCC
T ss_pred -----HHHHHHHHHHccCChhhCcCHHHHhcCHhhcCcc
Confidence 2466788899999999999999999999886543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=268.11 Aligned_cols=280 Identities=19% Similarity=0.170 Sum_probs=242.6
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcccccccccCCccccCCCCccEE
Q 042735 25 NLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERV 103 (667)
Q Consensus 25 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 103 (667)
.+++|++|++++|.+....+..|..+++|++|+|++|.+++..+..+.. .+|++|+|++|.+++..+..+..+.+|+.|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 4789999999999999766666899999999999999999877777877 569999999999998888889999999999
Q ss_pred EeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCC
Q 042735 104 IVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNIT 183 (667)
Q Consensus 104 ~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 183 (667)
++++|.++...+..+.++++|++|+|++|.+++..+..+..+++|++|++++|.+.+. .+..+++|+.|++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 9999999966555679999999999999999988888999999999999999998764 3567899999999999887
Q ss_pred CCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhh
Q 042735 184 RSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLG 263 (667)
Q Consensus 184 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 263 (667)
+ +...++|+.|++++|.+... |. ...++|+.|++++|.+.+. ..++.+++|++|+|++|.+++..|..+.
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 4 33456899999999998765 33 2357899999999999853 5789999999999999999998899999
Q ss_pred cccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCcCcccccCCcccccc
Q 042735 264 NLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEVF 319 (667)
Q Consensus 264 ~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~~~~ 319 (667)
.+++|+.|++++|++.+ +|..+..+++|++|++++|.+. .+|..+..++.+..+
T Consensus 270 ~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence 99999999999998754 6777788999999999999996 567666555555444
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=283.97 Aligned_cols=280 Identities=19% Similarity=0.162 Sum_probs=246.1
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcccccccccCCccccCCCCccEE
Q 042735 25 NLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERV 103 (667)
Q Consensus 25 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 103 (667)
.+.+++.|++++|.+....+..|.++++|++|+|++|.+++..|..+.. .+|+.|+|++|.+++..+..+..+++|+.|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 4688999999999999777777899999999999999999888878877 469999999999999888889999999999
Q ss_pred EeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCC
Q 042735 104 IVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNIT 183 (667)
Q Consensus 104 ~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 183 (667)
++++|.+++..+..+.++++|+.|+|++|.+++..+..|+.+++|++|++++|.+.+.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 99999999776667899999999999999999999999999999999999999997652 566889999999999887
Q ss_pred CCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhh
Q 042735 184 RSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLG 263 (667)
Q Consensus 184 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 263 (667)
+ +...++|+.|++++|.+....+.. .++|+.|+|++|.+++ +..++.+++|+.|+|++|.+++..|..++
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 5 344568999999999987554332 3689999999999986 46789999999999999999999999999
Q ss_pred cccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCcCcccccCCcccccc
Q 042735 264 NLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEVF 319 (667)
Q Consensus 264 ~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~~~~ 319 (667)
.+++|+.|+|++|.+.+ +|..+..+++|+.|++++|.+. .+|..+..++.+..+
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence 99999999999999765 6877888999999999999997 678776665555544
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-29 Score=280.50 Aligned_cols=310 Identities=20% Similarity=0.169 Sum_probs=247.2
Q ss_pred EEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEccccc
Q 042735 7 ELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALENNH 85 (667)
Q Consensus 7 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~ 85 (667)
..+-++-.++. +|..+ -+++++|||++|+|++..|.+|.++++|++|+|++|+|++..|..|.. .+|++|+|++|+
T Consensus 35 ~~~c~~~~l~~-vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYK-IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSS-CCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCc-cCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 44556666775 56544 258999999999999888889999999999999999999877888887 569999999999
Q ss_pred ccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccc-cchhhhcCCCCCEEECcCCccCCccCc
Q 042735 86 FTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGT-ISEAFGIYLNLTFLDISDNNFFGEIAS 164 (667)
Q Consensus 86 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~ 164 (667)
+++..+..|.++.+|+.|++++|++++..+..++++++|++|+|++|.+++. .|..++.+++|++|++++|++.+..+.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 9988888899999999999999999988788899999999999999999764 578899999999999999988654443
Q ss_pred cCCCC---------------------------------------------------------------------------
Q 042735 165 NWGKC--------------------------------------------------------------------------- 169 (667)
Q Consensus 165 ~~~~l--------------------------------------------------------------------------- 169 (667)
.+..+
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 271 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 271 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence 32211
Q ss_pred --------------------------------------------------------CCCCEEEccCCcCCCCcCc-----
Q 042735 170 --------------------------------------------------------PKLSTLNVSMNNITRSIPL----- 188 (667)
Q Consensus 170 --------------------------------------------------------~~L~~L~L~~n~l~~~~p~----- 188 (667)
..|+.|++.+|.+.+..+.
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L 351 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 351 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTC
T ss_pred ccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhh
Confidence 1233333333333221111
Q ss_pred --------------cccCCCCcCeeeccCCcccc----------------------------------------------
Q 042735 189 --------------EIGNLSTLNEFDLSLNHIVG---------------------------------------------- 208 (667)
Q Consensus 189 --------------~~~~l~~L~~L~L~~n~l~~---------------------------------------------- 208 (667)
....+++|+.|+++.|.+..
T Consensus 352 ~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 431 (635)
T 4g8a_A 352 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 431 (635)
T ss_dssp CEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSE
T ss_pred hhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcc
Confidence 11235567777777665421
Q ss_pred ---c-CCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcC-CccchhhhhcccCCCeecCCCccCccccc
Q 042735 209 ---K-IPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRF-SSLIPESLGNLLKLHYLDLSKYQFIQELP 283 (667)
Q Consensus 209 ---~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~ls~n~~~~~~p 283 (667)
. .+..|..+.+++.++++.|.+.+..+..+..+++|+.|+|++|.+ .+..|..+..+++|+.|+|++|++.+..|
T Consensus 432 ~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~ 511 (635)
T 4g8a_A 432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511 (635)
T ss_dssp EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh
Confidence 0 113456778889999999999988899999999999999999975 45578899999999999999999999999
Q ss_pred hhhhcCCCCCEEECcCCCCCCcCcccccCCcccccc
Q 042735 284 KELGKLVQLSELELSHNFLGREIPSQICSMECCEVF 319 (667)
Q Consensus 284 ~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~~~~ 319 (667)
..|..+++|++|+|++|.+.+..|..+..+..++.+
T Consensus 512 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 512 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence 999999999999999999988777777777666655
|
| >1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-31 Score=277.79 Aligned_cols=231 Identities=17% Similarity=0.227 Sum_probs=165.5
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-----------CCCeeEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-----------HRNIVKFYG 488 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----------H~niv~~~g 488 (667)
++|...+.||+|+||.||+|.. .+++.||||++... ....+.+.+|++++.+++ ||||+++++
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~ 93 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-----KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLD 93 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-----HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-----ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHH
Confidence 5788899999999999999986 56888999998642 234467889999999887 899999999
Q ss_pred EEEeCC----ceEEEEEecCCCChHHHhccc--------------------------c-CCcccccccCCeeec------
Q 042735 489 FCSHAR----HSILIYEYLKRGSLATNLSND--------------------------A-AAEELDISSKNVLLD------ 531 (667)
Q Consensus 489 ~~~~~~----~~~lv~ey~~~g~L~~~l~~~--------------------------~-~~~~~dlk~~NiLld------ 531 (667)
++...+ ..++||||+ +|+|.+.+... . ...|.||||+|||++
T Consensus 94 ~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~ 172 (373)
T 1q8y_A 94 HFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPE 172 (373)
T ss_dssp EEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTT
T ss_pred HhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCc
Confidence 998654 789999999 88988776431 1 233459999999994
Q ss_pred CCCceEEecccccccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhh-h
Q 042735 532 LEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV-I 604 (667)
Q Consensus 532 ~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~-~ 604 (667)
..+.+||+|||+++..... .+...||+.|+||| |+.++|||||||++|||+||+.||............ .
T Consensus 173 ~~~~~kl~Dfg~a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~ 249 (373)
T 1q8y_A 173 NLIQIKIADLGNACWYDEH---YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDH 249 (373)
T ss_dssp TEEEEEECCCTTCEETTBC---CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHH
T ss_pred CcceEEEcccccccccCCC---CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHH
Confidence 4458999999999876432 23457999999999 688999999999999999999998633211000000 0
Q ss_pred hhhhccccCC-----------------------CCCC------------CCCchHHHHHHHHHHHHhccccCCCCCCCHH
Q 042735 605 NMRLDEMLDP-----------------------RLPP------------PSPDVQGKLISIMEVAFSCLDVSPESRPTMQ 649 (667)
Q Consensus 605 ~~~~~~~~~~-----------------------~~~~------------~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ 649 (667)
...+...+.. .... ...........+.+++.+||+.||++|||++
T Consensus 250 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ 329 (373)
T 1q8y_A 250 IAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAG 329 (373)
T ss_dssp HHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHH
T ss_pred HHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHH
Confidence 0000000000 0000 0000123345677899999999999999999
Q ss_pred HHHHHHHHhhh
Q 042735 650 TITQQLLFSLV 660 (667)
Q Consensus 650 ev~~~l~~~~~ 660 (667)
|++++.||...
T Consensus 330 ell~hp~f~~~ 340 (373)
T 1q8y_A 330 GLVNHPWLKDT 340 (373)
T ss_dssp HHHTCGGGTTC
T ss_pred HHhhChhhhcc
Confidence 99999998754
|
| >3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=279.70 Aligned_cols=227 Identities=18% Similarity=0.229 Sum_probs=164.7
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCC-CCeeEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH-RNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H-~niv~~~g~~~~~~~~~l 498 (667)
++|...+.||+|+||.||+|.. .+++.||||++..... ...+.+|++++..++| +++..+..++.+.+..++
T Consensus 7 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~------~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~l 80 (483)
T 3sv0_A 7 NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK------HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVL 80 (483)
T ss_dssp TTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS------SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEE
T ss_pred CcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc------cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEE
Confidence 5788999999999999999986 5688999998754322 1247789999999986 666677777788889999
Q ss_pred EEEecCCCChHHHhcccc-------------------------CCcccccccCCeee---cCCCceEEecccccccccCC
Q 042735 499 IYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLL---DLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLl---d~~~~~kl~DFGla~~~~~~ 550 (667)
||||+ +|+|.+++.... ...|.||||+|||+ +.++.+||+|||+++.....
T Consensus 81 vme~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~ 159 (483)
T 3sv0_A 81 VMDLL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDT 159 (483)
T ss_dssp EEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred EEECC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCC
Confidence 99999 999998875311 11234999999999 68899999999999876543
Q ss_pred CCC-------cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCC
Q 042735 551 SSN-------WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617 (667)
Q Consensus 551 ~~~-------~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (667)
... .....||+.|+||| |+.++|||||||++|||+||+.||........... ........+.....
T Consensus 160 ~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~-~~~i~~~~~~~~~~ 238 (483)
T 3sv0_A 160 STHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQK-YEKISEKKVATSIE 238 (483)
T ss_dssp TTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHH-HHHHHHHHHHSCHH
T ss_pred ccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHH-HHHHhhccccccHH
Confidence 221 22568999999998 56789999999999999999999864332111000 00000000000000
Q ss_pred CCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
. .......++.+++..||+.+|++||++++|++.+...
T Consensus 239 ~---l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l 276 (483)
T 3sv0_A 239 A---LCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDL 276 (483)
T ss_dssp H---HHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred H---HhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 0 0001123567888999999999999999999877654
|
| >2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-30 Score=269.74 Aligned_cols=233 Identities=19% Similarity=0.258 Sum_probs=167.2
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CC-ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCC------eeEEEEEEEe
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SK-EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN------IVKFYGFCSH 492 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~-~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n------iv~~~g~~~~ 492 (667)
++|+..+.||+|+||.||+|... ++ ..||||++... ....+.+.+|++++++++|++ ++.+++++..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~ 93 (355)
T 2eu9_A 19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-----GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNF 93 (355)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-----HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE
T ss_pred ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-----ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee
Confidence 57888999999999999999864 34 68999998642 234567889999999998777 9999999999
Q ss_pred CCceEEEEEecCCCChHHHhcccc--------------------------CCcccccccCCeee----------------
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLL---------------- 530 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLl---------------- 530 (667)
.+..++||||+ +|++.+.+.... ...|.||||+|||+
T Consensus 94 ~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~ 172 (355)
T 2eu9_A 94 HGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCE 172 (355)
T ss_dssp TTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CCC
T ss_pred CCeEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeccccccccccccccc
Confidence 99999999999 566655553321 11234999999999
Q ss_pred ---cCCCceEEecccccccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC---
Q 042735 531 ---DLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL--- 598 (667)
Q Consensus 531 ---d~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~--- 598 (667)
+.++.+||+|||+++..... .....||+.|+||| |+.++|||||||++|||+||+.||.......
T Consensus 173 ~~~~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~ 249 (355)
T 2eu9_A 173 EKSVKNTSIRVADFGSATFDHEH---HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLV 249 (355)
T ss_dssp EEEESCCCEEECCCTTCEETTSC---CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH
T ss_pred ccccCCCcEEEeecCcccccccc---ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 67889999999999864432 23568999999999 6789999999999999999999986322100
Q ss_pred -------CChhhh--hhhhc-cccCC--CCCCC-----------------CCchHHHHHHHHHHHHhccccCCCCCCCHH
Q 042735 599 -------PSPSVI--NMRLD-EMLDP--RLPPP-----------------SPDVQGKLISIMEVAFSCLDVSPESRPTMQ 649 (667)
Q Consensus 599 -------~~~~~~--~~~~~-~~~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ 649 (667)
+.+... ..... ..... .++.. ..........+.+++.+||+.||++|||++
T Consensus 250 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ 329 (355)
T 2eu9_A 250 MMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLA 329 (355)
T ss_dssp HHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHH
T ss_pred HHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHH
Confidence 000000 00000 00000 00000 000012234677899999999999999999
Q ss_pred HHHHHHHHhhhhh
Q 042735 650 TITQQLLFSLVYF 662 (667)
Q Consensus 650 ev~~~l~~~~~~~ 662 (667)
|++++.||.....
T Consensus 330 e~l~hp~f~~~~~ 342 (355)
T 2eu9_A 330 EALLHPFFAGLTP 342 (355)
T ss_dssp HHTTSGGGGGCCH
T ss_pred HHhcChhhcCCCh
Confidence 9999999986543
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-30 Score=260.17 Aligned_cols=212 Identities=9% Similarity=0.028 Sum_probs=157.8
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|...+.||+|+||.||+|+.. +++.||||++....... ....+.|.+|+.++++++|||||++++++.+.+..|+|
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~-~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 109 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLP-DDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV 109 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSC-HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccC-HHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence 46888899999999999999875 48899999987654322 23456799999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc----------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcccc
Q 042735 500 YEYLKRGSLATNLSNDA----------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSAL 557 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~----------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~ 557 (667)
|||+++|+|.+++.... ...|.||||+|||++.++.+||+++|
T Consensus 110 ~e~~~g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~--------------- 174 (286)
T 3uqc_A 110 AEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPA--------------- 174 (286)
T ss_dssp EECCCEEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCC---------------
T ss_pred EEecCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEecc---------------
Confidence 99999999998875432 11244999999999999999998443
Q ss_pred cccccccCCCCCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhc
Q 042735 558 VGTYRYVAPDYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSC 637 (667)
Q Consensus 558 ~Gt~~y~aPE~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 637 (667)
|++| ++.++|||||||++|||+||+.||............ ........+.+..........+.+++.+|
T Consensus 175 -----~~~~-~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~li~~~ 243 (286)
T 3uqc_A 175 -----TMPD-ANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPA-----ERDTAGQPIEPADIDRDIPFQISAVAARS 243 (286)
T ss_dssp -----CCTT-CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEEC-----CBCTTSCBCCHHHHCTTSCHHHHHHHHHH
T ss_pred -----ccCC-CCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHH-----HHHhccCCCChhhcccCCCHHHHHHHHHH
Confidence 4444 688999999999999999999998643321100000 00001111100000001122467888899
Q ss_pred cccCCCCCCCHHHHHHHHHHhhh
Q 042735 638 LDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 638 l~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
|+.||++| |+.|+++.|.....
T Consensus 244 l~~dP~~R-s~~el~~~L~~~~~ 265 (286)
T 3uqc_A 244 VQGDGGIR-SASTLLNLMQQATA 265 (286)
T ss_dssp HCTTSSCC-CHHHHHHHHHHHHC
T ss_pred cccCCccC-CHHHHHHHHHHHhc
Confidence 99999999 99999999987654
|
| >3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=260.34 Aligned_cols=213 Identities=19% Similarity=0.277 Sum_probs=154.1
Q ss_pred HcCCcCc-ceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHH-HhcCCCCeeEEEEEEEe----
Q 042735 420 INDFDAK-YCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEAL-TKIRHRNIVKFYGFCSH---- 492 (667)
Q Consensus 420 ~~~f~~~-~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l-~~l~H~niv~~~g~~~~---- 492 (667)
.++|... +.||+|+||.||+|.. .+++.||||++.. ...+.+|++++ +..+||||+++++++..
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~---------~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~ 86 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---------CPKARREVELHWRASQCPHIVRIVDVYENLYAG 86 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC---------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETT
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc---------cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCC
Confidence 3567666 7799999999999986 5678999999753 13467889887 56689999999999987
Q ss_pred CCceEEEEEecCCCChHHHhcccc---C-----------------------CcccccccCCeeecC---CCceEEecccc
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDA---A-----------------------AEELDISSKNVLLDL---EHKAHVSDFGI 543 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~---~-----------------------~~~~dlk~~NiLld~---~~~~kl~DFGl 543 (667)
....++||||+++|+|.+.+.... . ..|.||||+||+++. ++.+||+|||+
T Consensus 87 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~ 166 (299)
T 3m2w_A 87 RKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGF 166 (299)
T ss_dssp EEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTT
T ss_pred CceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEecccc
Confidence 677899999999999998886432 1 113499999999998 78999999999
Q ss_pred cccccCCCCCcccccccccccCCCCCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 544 AKFLKPDSSNWSALVGTYRYVAPDYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 544 a~~~~~~~~~~~~~~Gt~~y~aPE~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
++.... ..|+.++|||||||++|||+||+.||............ ...........+.+..
T Consensus 167 a~~~~~----------------~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 226 (299)
T 3m2w_A 167 AKETTG----------------EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGM----KTRIRMGQYEFPNPEW 226 (299)
T ss_dssp CEECTT----------------CGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCS----CCSSCTTCCSSCHHHH
T ss_pred cccccc----------------ccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHH----HHHHhhccccCCchhc
Confidence 975431 12567899999999999999999998532211100000 0011111111111111
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
......+.+++.+||+.||++|||++|++++.|+....
T Consensus 227 ~~~~~~~~~li~~~l~~dP~~Rps~~e~l~hp~~~~~~ 264 (299)
T 3m2w_A 227 SEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST 264 (299)
T ss_dssp TTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHTGG
T ss_pred ccCCHHHHHHHHHHcccChhhCCCHHHHhcChhhcccc
Confidence 11223567888899999999999999999999997554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-30 Score=290.15 Aligned_cols=211 Identities=21% Similarity=0.256 Sum_probs=159.4
Q ss_pred cCCcCcceeecccCeEEEEEEeC--CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc---
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP--SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH--- 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~--~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~--- 495 (667)
++|...+.||+|+||.||+|... +++.||||++.... .....+.|.+|++++++++|||||++++++...+.
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~ 156 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSG---DAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGD 156 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSC---CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSC
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccC---CHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCC
Confidence 57889999999999999999875 57889999876432 23345678999999999999999999999988765
Q ss_pred --eEEEEEecCCCChHHHhccc----------------------cCCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 496 --SILIYEYLKRGSLATNLSND----------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 496 --~~lv~ey~~~g~L~~~l~~~----------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
.|+||||+++|+|.+.+... ....|.||||+|||++.+ .+||+|||+++.....
T Consensus 157 ~~~~lv~E~~~g~~L~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~- 234 (681)
T 2pzi_A 157 PVGYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRINSF- 234 (681)
T ss_dssp EEEEEEEECCCCEECC----CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSS-CEEECCCTTCEETTCC-
T ss_pred ceeEEEEEeCCCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeCC-cEEEEecccchhcccC-
Confidence 79999999999998765431 112345999999999975 8999999999876433
Q ss_pred CCcccccccccccCCC-----CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 552 SNWSALVGTYRYVAPD-----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE-----~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
+...||+.|+||| ++.++|||||||++|||++|..|+..... + .++.. ......
T Consensus 235 ---~~~~gt~~y~aPE~~~~~~~~~sDi~slG~~l~~l~~g~~~~~~~~~----------------~-~~~~~-~~~~~~ 293 (681)
T 2pzi_A 235 ---GYLYGTPGFQAPEIVRTGPTVATDIYTVGRTLAALTLDLPTRNGRYV----------------D-GLPED-DPVLKT 293 (681)
T ss_dssp ---SCCCCCTTTSCTTHHHHCSCHHHHHHHHHHHHHHHHSCCCEETTEEC----------------S-SCCTT-CHHHHH
T ss_pred ---CccCCCccccCHHHHcCCCCCceehhhhHHHHHHHHhCCCCCccccc----------------c-ccccc-cccccc
Confidence 3467999999999 46789999999999999999888642110 0 01111 111112
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
...+.+++.+||+.||++||+..+.+.+.++
T Consensus 294 ~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~ 324 (681)
T 2pzi_A 294 YDSYGRLLRRAIDPDPRQRFTTAEEMSAQLT 324 (681)
T ss_dssp CHHHHHHHHHHTCSSGGGSCSSHHHHHHHHH
T ss_pred CHHHHHHHhhhccCChhhCCCHHHHHHHHHH
Confidence 2356788899999999999976665555443
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=263.11 Aligned_cols=271 Identities=25% Similarity=0.319 Sum_probs=133.1
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEc
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLAL 81 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L 81 (667)
++|+.|++++|.+++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++ +|. ++. .+|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp~-~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LPE-LQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CCC-CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Ccc-cCCCCCCCEEEC
Confidence 456777777777766 3432 2455555555555543 2211 1345555555555543 442 333 33555555
Q ss_pred ccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCc
Q 042735 82 ENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGE 161 (667)
Q Consensus 82 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 161 (667)
++|.+++ +|..+ .+|+.|++++|++++ +| .+.++++|+.|++++|.+++. |.. ..+|++|++++|.+. .
T Consensus 161 ~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 161 DNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNNILE-E 229 (454)
T ss_dssp CSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCS-S
T ss_pred CCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCCcCC-c
Confidence 5555543 22221 245555555555544 23 345555555555555554431 111 124445555554443 3
Q ss_pred cCccCCCCCCCCEEEccCCcCCCCcCccc-----------------cCCCCcCeeeccCCcccccCCccccCCcccceee
Q 042735 162 IASNWGKCPKLSTLNVSMNNITRSIPLEI-----------------GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLI 224 (667)
Q Consensus 162 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-----------------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 224 (667)
+| .+..+++|+.|++++|++++ +|..+ ..+++|+.|++++|.+.+. |.. .++|+.|+
T Consensus 230 lp-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~ 303 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL-SEL---PPNLYYLN 303 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEE-SCC---CTTCCEEE
T ss_pred cc-ccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcc-cCc---CCcCCEEE
Confidence 33 24444445555554444443 22111 0123444444444444431 100 12344444
Q ss_pred cccccccccCcccccCC-CCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCC
Q 042735 225 LRGNQLIGHLPSEIGSL-TKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLG 303 (667)
Q Consensus 225 L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 303 (667)
+++|.+.+ +..+ ++|++|++++|++++ +|.. +++|+.|++++|++. .+|. .+++|++|++++|.+.
T Consensus 304 l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 304 ASSNEIRS-----LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR 370 (454)
T ss_dssp CCSSCCSE-----ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS
T ss_pred CcCCcCCc-----ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCC
Confidence 44444332 1122 477777777777776 3433 467777777777755 4565 3567777777777777
Q ss_pred C--cCcccccCC
Q 042735 304 R--EIPSQICSM 313 (667)
Q Consensus 304 ~--~ip~~~~~~ 313 (667)
+ .+|..+..+
T Consensus 371 ~l~~ip~~l~~L 382 (454)
T 1jl5_A 371 EFPDIPESVEDL 382 (454)
T ss_dssp SCCCCCTTCCEE
T ss_pred cCCCChHHHHhh
Confidence 6 666665544
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=253.07 Aligned_cols=248 Identities=22% Similarity=0.248 Sum_probs=177.3
Q ss_pred cEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeecccccccee--CCCCCc-ccccCEEEcc
Q 042735 6 RELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGS--IPPSVG-NLMLTVLALE 82 (667)
Q Consensus 6 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~~~-~~~L~~L~L~ 82 (667)
+.++++++.++.+ |..+ .++|++|+|++|+++...+..|.++++|++|+|++|+++.. .|..+. ..+|++|+|+
T Consensus 10 ~~l~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccC-CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 5688899988864 5544 36899999999999865555688999999999999988733 233332 3568888888
Q ss_pred cccccccCCccccCCCCccEEEeeCcccccccC-ccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCC-
Q 042735 83 NNHFTGNLRHNICRNGALERVIVGGNHFRGPIP-KCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFG- 160 (667)
Q Consensus 83 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~- 160 (667)
+|.+.. ++..+..+.+|+.|++++|.+++..+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 888763 45556677777777777777766544 456777777777777777776666677777777777777777765
Q ss_pred ccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccC
Q 042735 161 EIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240 (667)
Q Consensus 161 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 240 (667)
..|..+..+++|+.|++++|.+++..|..+.++++|++|+|++|.+.+..+..+..+++|+.|++++|.+.+..|..+..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 45666777777777777777777666666777777777777777776655556667777777777777777666666666
Q ss_pred CC-CCCeeeccCCcCCcc
Q 042735 241 LT-KLEFLNLSTNRFSSL 257 (667)
Q Consensus 241 l~-~L~~L~Ls~N~l~~~ 257 (667)
++ +|++|+|++|.+++.
T Consensus 246 ~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCTTCCEEECTTCCEECS
T ss_pred hhccCCEEEccCCCeecc
Confidence 63 677777777776553
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=252.51 Aligned_cols=234 Identities=21% Similarity=0.279 Sum_probs=165.3
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEc
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLAL 81 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L 81 (667)
++++.|+|++|.++. +|..+.++++|++|+|++|.++ .+|..++++++|++|+|++|+++ .+|..+.. .+|+.|+|
T Consensus 81 ~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 455555666555552 3444555555666666655555 45555555555555555555555 44444443 23555555
Q ss_pred ccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCc
Q 042735 82 ENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGE 161 (667)
Q Consensus 82 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 161 (667)
++|.+.+.+|..+... .++..+.++++|++|+|++|+++ .+|..++.+++|++|++++|.+.+
T Consensus 158 ~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 5544444444333210 01112345888888888888887 667778888889999998888874
Q ss_pred cCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCC
Q 042735 162 IASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSL 241 (667)
Q Consensus 162 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 241 (667)
+|..+..+++|+.|+|++|.+.+.+|..++++++|+.|+|++|.+.+.+|..+.++++|+.|+|++|.+.+.+|..++.+
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 56678888899999999988888888888889999999999988888888889999999999999998888999999999
Q ss_pred CCCCeeeccCCcCCc
Q 042735 242 TKLEFLNLSTNRFSS 256 (667)
Q Consensus 242 ~~L~~L~Ls~N~l~~ 256 (667)
++|+.+++..|.+..
T Consensus 301 ~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 301 PANCIILVPPHLQAQ 315 (328)
T ss_dssp CTTCEEECCGGGSCC
T ss_pred cCceEEeCCHHHHHH
Confidence 999999888776654
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=259.26 Aligned_cols=278 Identities=16% Similarity=0.185 Sum_probs=179.5
Q ss_pred CCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcccccccccCCccccCCCCccEEE
Q 042735 26 LKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERVI 104 (667)
Q Consensus 26 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 104 (667)
++...+.++++|.++ .+|..+. ++|++|+|++|++++..+..+.. .+|+.|+|++|.+++..+..+.++.+|+.|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 444445555555555 3444332 35555555555555443334443 3455555555555555555555566666666
Q ss_pred eeCcccccccCccCCCCCCCcEEEccCCccccccc-hhhhcCCCCCEEECcCCc-cCCccCccCCCCCCCCEEEccCCcC
Q 042735 105 VGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTIS-EAFGIYLNLTFLDISDNN-FFGEIASNWGKCPKLSTLNVSMNNI 182 (667)
Q Consensus 105 l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 182 (667)
+++|++++..+..+.++++|++|+|++|.++...+ ..+..+++|++|++++|. +.+..+..|..+++|+.|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 66666665444446667777777777777765443 456677777777777763 4444456677777777777777777
Q ss_pred CCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccc---cCCCCCCeeeccCCcCCcc--
Q 042735 183 TRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI---GSLTKLEFLNLSTNRFSSL-- 257 (667)
Q Consensus 183 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~-- 257 (667)
.+..|..+.++++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+ .....++.++|+++.+++.
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 76667777777777777777777653333334456777777777777766544433 2356778888888887653
Q ss_pred --chhhhhcccCCCeecCCCccCccccchh-hhcCCCCCEEECcCCCCCCcCc
Q 042735 258 --IPESLGNLLKLHYLDLSKYQFIQELPKE-LGKLVQLSELELSHNFLGREIP 307 (667)
Q Consensus 258 --~p~~~~~l~~L~~L~ls~n~~~~~~p~~-l~~l~~L~~L~l~~n~l~~~ip 307 (667)
+|.++..+++|+.|++++|++. .+|.. ++.+++|++|++++|++....|
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 6778888899999999999876 56655 5888999999999998876554
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=252.13 Aligned_cols=223 Identities=19% Similarity=0.267 Sum_probs=183.6
Q ss_pred ccCEEEcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECc
Q 042735 75 MLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDIS 154 (667)
Q Consensus 75 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 154 (667)
.++.|+|++|.++ .+|..+..+.+|++|++++|.++ .+|..+.++++|++|+|++|.++ .+|..++.+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 4666666666665 55566666777777777777777 67777778888888888888887 567778888888888888
Q ss_pred CCccCCccCccCCC---------CCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeec
Q 042735 155 DNNFFGEIASNWGK---------CPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLIL 225 (667)
Q Consensus 155 ~n~l~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 225 (667)
+|.+.+.+|..+.. +++|+.|+|++|.++ .+|..+.++++|++|+|++|.+.+ +|..++.+++|+.|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEEC
Confidence 87777777776654 888999999999888 677888889999999999998885 5667888999999999
Q ss_pred ccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCC
Q 042735 226 RGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFL 302 (667)
Q Consensus 226 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l 302 (667)
++|.+.+.+|..++++++|++|+|++|++.+.+|..+.++++|+.|++++|++.+.+|.+++.+++|+.+++..|.+
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 99888888888899999999999999888888898899999999999999999999999999999999998887755
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-28 Score=258.12 Aligned_cols=277 Identities=15% Similarity=0.103 Sum_probs=232.7
Q ss_pred CCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcc
Q 042735 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALE 82 (667)
Q Consensus 4 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~ 82 (667)
.....++++|.++. +|..+. ++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+.. .+|++|+|+
T Consensus 32 ~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 32 RNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp TTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 34567889999986 465543 58999999999999877779999999999999999999888887877 569999999
Q ss_pred cccccccCCccccCCCCccEEEeeCcccccccC-ccCCCCCCCcEEEccCC-ccccccchhhhcCCCCCEEECcCCccCC
Q 042735 83 NNHFTGNLRHNICRNGALERVIVGGNHFRGPIP-KCLRNCPNLVRISLEGN-NMRGTISEAFGIYLNLTFLDISDNNFFG 160 (667)
Q Consensus 83 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~L~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 160 (667)
+|.+++..+..+..+.+|+.|++++|.+++..+ ..+.++++|++|++++| .+....+..|..+++|++|++++|.+.+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 999987666668899999999999999986544 47899999999999999 5777778889999999999999999998
Q ss_pred ccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCcccc---CCcccceeecccccccc----c
Q 042735 161 EIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFG---KLNSLTKLILRGNQLIG----H 233 (667)
Q Consensus 161 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~L~~n~l~~----~ 233 (667)
..|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+. ....++.++++++.+.+ .
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 8899999999999999999999754444456689999999999999876555443 45677888888887765 4
Q ss_pred CcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccc
Q 042735 234 LPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELP 283 (667)
Q Consensus 234 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p 283 (667)
+|..++.+++|+.|+|++|+++...+..+..+++|+.|++++|++.+..|
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 67788999999999999999996544446899999999999999877655
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-28 Score=250.51 Aligned_cols=261 Identities=22% Similarity=0.217 Sum_probs=220.7
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccc--cCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEE
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRG--SLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVL 79 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L 79 (667)
++|+.|+|++|.++.+.+..|.++++|++|+|++|+++. ..|..+..+++|++|+|++|.+.. +|..+.. .+|+.|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence 479999999999998766778999999999999999983 336788889999999999999985 5555555 579999
Q ss_pred EcccccccccCC-ccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCcccc-ccchhhhcCCCCCEEECcCCc
Q 042735 80 ALENNHFTGNLR-HNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRG-TISEAFGIYLNLTFLDISDNN 157 (667)
Q Consensus 80 ~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~L~~n~ 157 (667)
+|++|.+++..+ ..+..+.+|+.|++++|.+.+..+..+..+++|++|+|++|.+++ ..|..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 999999987665 578889999999999999999999999999999999999999987 578899999999999999999
Q ss_pred cCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCc-ccceeecccccccccCc-
Q 042735 158 FFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLN-SLTKLILRGNQLIGHLP- 235 (667)
Q Consensus 158 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p- 235 (667)
+.+..|..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|.+.+..|..+..++ +|+.|++++|.+...-+
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 9988899999999999999999999988887899999999999999999999999999985 99999999999875422
Q ss_pred -ccccCCCCCCeeeccCCcCCccchhhhhc
Q 042735 236 -SEIGSLTKLEFLNLSTNRFSSLIPESLGN 264 (667)
Q Consensus 236 -~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 264 (667)
.....+..++.+.+..+.+....|..+.+
T Consensus 267 ~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 267 QSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp HHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred HHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 11222333444444445555444554443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=255.86 Aligned_cols=245 Identities=25% Similarity=0.240 Sum_probs=164.3
Q ss_pred CCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcccccccccCCccccCCCCccEEEeeC
Q 042735 29 LVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERVIVGG 107 (667)
Q Consensus 29 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 107 (667)
...++.+++.++ .+|..+. ++|++|+|++|+|++..|..+.. .+|+.|+|++|.+++..+..+.++.+|+.|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 345555555554 3444332 45555555555555554555544 3355555555555555555566666666666666
Q ss_pred cccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccC-ccCCCCCCCCEEEccCCcCCCCc
Q 042735 108 NHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIA-SNWGKCPKLSTLNVSMNNITRSI 186 (667)
Q Consensus 108 n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~ 186 (667)
|++++..+..+..+++|++|+|++|.++...+..|..+++|+.|++++|...+.++ ..|..+++|+.|+|++|++++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 66665555667777777777777777776666677777777777777744334443 4577777777777777777653
Q ss_pred CccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhccc
Q 042735 187 PLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLL 266 (667)
Q Consensus 187 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 266 (667)
| .+..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|.+.+..+..|.++++|+.|+|++|++++..+..+..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 3 467777777888887777777777777777888888888877777777777777888888888887777666777777
Q ss_pred CCCeecCCCccC
Q 042735 267 KLHYLDLSKYQF 278 (667)
Q Consensus 267 ~L~~L~ls~n~~ 278 (667)
+|+.|++++|.+
T Consensus 291 ~L~~L~L~~Np~ 302 (452)
T 3zyi_A 291 YLVELHLHHNPW 302 (452)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEccCCCc
Confidence 788888877764
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-28 Score=260.34 Aligned_cols=269 Identities=22% Similarity=0.277 Sum_probs=192.7
Q ss_pred CCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCC-------------CeeeccccccceeCC
Q 042735 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSL-------------RYLFLFENNLSGSIP 68 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-------------~~L~L~~n~l~~~~p 68 (667)
.++|+.|++++|.+ +.+|.+++++++|++|++++|++.+.+|.+++++++| ++|++++|.+++ +|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 46899999999999 6789999999999999999999999999999999875 999999999875 45
Q ss_pred CCCcccccCEEEcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCC
Q 042735 69 PSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNL 148 (667)
Q Consensus 69 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 148 (667)
.. ..+|+.|++++|.+++ +|.. ..+|+.|++++|++++. |.. .++|++|++++|++++ +| .++.+++|
T Consensus 88 ~~--~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 88 EL--PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp SC--CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred CC--cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 42 2469999999999987 5543 37889999999988752 221 1689999999999886 55 58888999
Q ss_pred CEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccc
Q 042735 149 TFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGN 228 (667)
Q Consensus 149 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 228 (667)
++|++++|++.+ +|.. ..+|++|++++|.+++ +| .++++++|++|++++|.+.+ +|... ++|+.|++++|
T Consensus 156 ~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n 225 (454)
T 1jl5_A 156 KIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNN 225 (454)
T ss_dssp CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSS
T ss_pred CEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCC
Confidence 999999998875 5543 3588999999998886 55 58888999999999988875 44332 57888899888
Q ss_pred cccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCC
Q 042735 229 QLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGR 304 (667)
Q Consensus 229 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~ 304 (667)
.+. .+| .++.+++|++|++++|++++. |.. +++|+.|++++|++.+ +|.. .++|++|++++|.+.+
T Consensus 226 ~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 226 ILE-ELP-ELQNLPFLTTIYADNNLLKTL-PDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CCS-SCC-CCTTCTTCCEEECCSSCCSSC-CSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred cCC-ccc-ccCCCCCCCEEECCCCcCCcc-ccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence 887 566 488888899999998888863 432 3678888888888654 5543 3678888888888765
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=242.52 Aligned_cols=225 Identities=20% Similarity=0.227 Sum_probs=138.2
Q ss_pred cEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEccccc
Q 042735 6 RELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNH 85 (667)
Q Consensus 6 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~ 85 (667)
+.++.+++.++.+ |..+ .++|++|+|++|++++..+..|.++++|++|+|++|.+++..|..+..
T Consensus 14 ~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------------ 78 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG------------ 78 (285)
T ss_dssp CEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred eEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC------------
Confidence 4566666666643 4332 356777777777776655566666777777777666666544444433
Q ss_pred ccccCCccccCCCCccEEEeeCcc-cccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCc
Q 042735 86 FTGNLRHNICRNGALERVIVGGNH-FRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIAS 164 (667)
Q Consensus 86 l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 164 (667)
+.+|+.|++++|. +....|..+..+++|++|+|++|.+++..+..+..+++|++|++++|.+.+..+.
T Consensus 79 -----------l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 147 (285)
T 1ozn_A 79 -----------LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147 (285)
T ss_dssp -----------CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred -----------ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh
Confidence 3333344444443 3333345566666666666666666665566666666666666666666655555
Q ss_pred cCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCC
Q 042735 165 NWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKL 244 (667)
Q Consensus 165 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 244 (667)
.|..+++|+.|+|++|.+++..+..+.++++|+.|+|++|.+.+..|..|..+++|+.|++++|.+.+..+..+..+++|
T Consensus 148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 56666666666666666665544456666666666666666666666666666666666666666665555556666666
Q ss_pred CeeeccCCcCCc
Q 042735 245 EFLNLSTNRFSS 256 (667)
Q Consensus 245 ~~L~Ls~N~l~~ 256 (667)
+.|++++|.+..
T Consensus 228 ~~L~l~~N~~~c 239 (285)
T 1ozn_A 228 QYLRLNDNPWVC 239 (285)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEeccCCCccC
Confidence 666666666654
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=242.71 Aligned_cols=205 Identities=19% Similarity=0.154 Sum_probs=132.5
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccc-cceeCCCCCcc-cccCEEE
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN-LSGSIPPSVGN-LMLTVLA 80 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~-~~L~~L~ 80 (667)
++|+.|+|++|.++++.+..|.++++|++|+|++|++++..|..|.++++|++|+|++|. +....|..+.. .+|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 589999999999999888889999999999999999998889999999999999999997 76555666655 3577777
Q ss_pred cccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCC
Q 042735 81 LENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFG 160 (667)
Q Consensus 81 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 160 (667)
|++|.+++..+..+..+.+|+.|++++|.+++. .+..|+.+++|++|++++|.+.+
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQAL------------------------PDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------------------------CTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCccccc------------------------CHhHhccCCCccEEECCCCcccc
Confidence 777766654444444445555555555544444 44444444445555555444443
Q ss_pred ccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeeccccccc
Q 042735 161 EIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLI 231 (667)
Q Consensus 161 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 231 (667)
..+..|..+++|+.|++++|.+++..|..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 33334444555555555555555444445555555555555555555443344555555555555555544
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-27 Score=254.61 Aligned_cols=248 Identities=20% Similarity=0.190 Sum_probs=224.1
Q ss_pred CCCeeeccccccceeCCCCCcccccCEEEcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccC
Q 042735 52 SLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEG 131 (667)
Q Consensus 52 ~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~ 131 (667)
..+.++.+++.++ .+|..+. ..++.|+|++|.+++..+..+..+.+|+.|++++|++++..|..+.++++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcC-ccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 4678888888887 4666543 4699999999999999899999999999999999999999889999999999999999
Q ss_pred CccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCc-CccccCCCCcCeeeccCCcccccC
Q 042735 132 NNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSI-PLEIGNLSTLNEFDLSLNHIVGKI 210 (667)
Q Consensus 132 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~ 210 (667)
|++++..+..|..+++|++|+|++|.+.+..+..|..+++|+.|++++|+..+.+ +..|.++++|++|+|++|.+.+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 9999888888999999999999999998777778999999999999995444444 45689999999999999999864
Q ss_pred CccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCC
Q 042735 211 PKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLV 290 (667)
Q Consensus 211 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~ 290 (667)
| .+..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|++.+..+..+..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 4 588999999999999999999999999999999999999999999999999999999999999998877777889999
Q ss_pred CCCEEECcCCCCC
Q 042735 291 QLSELELSHNFLG 303 (667)
Q Consensus 291 ~L~~L~l~~n~l~ 303 (667)
+|+.|++++|++.
T Consensus 291 ~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEccCCCcC
Confidence 9999999999863
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-27 Score=252.38 Aligned_cols=245 Identities=23% Similarity=0.251 Sum_probs=185.3
Q ss_pred CCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcccccccccCCccccCCCCccEEEeeC
Q 042735 29 LVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERVIVGG 107 (667)
Q Consensus 29 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 107 (667)
...++.+++.++ .+|..+. ++|+.|+|++|++++..+..+.. .+|+.|+|++|.+++..+..+.++.+|+.|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456666666665 4555442 55666666666666555555555 3466666666666666666677777777777777
Q ss_pred cccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCcc-CccCCCCCCCCEEEccCCcCCCCc
Q 042735 108 NHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEI-ASNWGKCPKLSTLNVSMNNITRSI 186 (667)
Q Consensus 108 n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~ 186 (667)
|+++...+..+..+++|+.|+|++|.++...+..|..+++|++|++++|...+.+ +..|.++++|+.|+|++|.++. +
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-I 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-C
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-c
Confidence 7777666667888888888888888888777778888888888888885444444 4467888888888888888874 4
Q ss_pred CccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhccc
Q 042735 187 PLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLL 266 (667)
Q Consensus 187 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 266 (667)
| .+..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|.+.+..+..|.++++|+.|+|++|++++..+..+..++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 4 477888888888888888888788888888888888888888888888888888888888888888887777788888
Q ss_pred CCCeecCCCccC
Q 042735 267 KLHYLDLSKYQF 278 (667)
Q Consensus 267 ~L~~L~ls~n~~ 278 (667)
+|+.|++++|.+
T Consensus 280 ~L~~L~L~~Np~ 291 (440)
T 3zyj_A 280 HLERIHLHHNPW 291 (440)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEcCCCCc
Confidence 888888888875
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=250.77 Aligned_cols=247 Identities=20% Similarity=0.217 Sum_probs=173.8
Q ss_pred CCCeeeccccccceeCCCCCcccccCEEEcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccC
Q 042735 52 SLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEG 131 (667)
Q Consensus 52 ~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~ 131 (667)
..+.++.+++.++ .+|..+. ..++.|+|++|++++..+..+..+.+|+.|++++|.+++..+..+.++++|++|+|++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcC-cCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 3556676666665 4554433 3577777777777776667777777777777777777766666777777777777777
Q ss_pred CccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCC-cCccccCCCCcCeeeccCCcccccC
Q 042735 132 NNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRS-IPLEIGNLSTLNEFDLSLNHIVGKI 210 (667)
Q Consensus 132 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~ 210 (667)
|+++...+..|..+++|++|+|++|.+....+..|..+++|+.|+|++|+..+. .+..|.++++|++|+|++|.+.. +
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-I 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-C
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-c
Confidence 777766666677777777777777777666566777777777777777443333 33456777777777777777763 3
Q ss_pred CccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCC
Q 042735 211 PKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLV 290 (667)
Q Consensus 211 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~ 290 (667)
| .+..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|++.+..+..+..++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 3 466777777777777777776677777777777777777777777777777777777777777777666666667777
Q ss_pred CCCEEECcCCCC
Q 042735 291 QLSELELSHNFL 302 (667)
Q Consensus 291 ~L~~L~l~~n~l 302 (667)
+|+.|++++|++
T Consensus 280 ~L~~L~L~~Np~ 291 (440)
T 3zyj_A 280 HLERIHLHHNPW 291 (440)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEcCCCCc
Confidence 777777777765
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-29 Score=256.03 Aligned_cols=249 Identities=21% Similarity=0.192 Sum_probs=195.6
Q ss_pred ccCCCCCCeeeccccccceeCCCCCcccccCEEEcccccc-cccCCcccc-------CCCCccEEEeeCcccccccCccC
Q 042735 47 VGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHF-TGNLRHNIC-------RNGALERVIVGGNHFRGPIPKCL 118 (667)
Q Consensus 47 ~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l-~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~p~~l 118 (667)
++..++|+.|++++|.+ .+|..+... |+.|+|++|.+ .+.++..+. .+.+|+.|++++|++++.+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI-IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH-HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH-HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 45566677777777776 455544333 66777777776 344555444 67888888888888888888876
Q ss_pred --CCCCCCcEEEccCCccccccchhhhcC-----CCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCC--cCcc
Q 042735 119 --RNCPNLVRISLEGNNMRGTISEAFGIY-----LNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRS--IPLE 189 (667)
Q Consensus 119 --~~l~~L~~L~L~~n~~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p~~ 189 (667)
..+++|++|+|++|++++. |..++.+ ++|++|++++|++.+..+..|..+++|+.|+|++|++.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 8899999999999999877 7777776 8999999999999888888999999999999999988764 2334
Q ss_pred c--cCCCCcCeeeccCCccccc--CC-ccccCCcccceeecccccccccCc-ccccCCCCCCeeeccCCcCCccchhhhh
Q 042735 190 I--GNLSTLNEFDLSLNHIVGK--IP-KEFGKLNSLTKLILRGNQLIGHLP-SEIGSLTKLEFLNLSTNRFSSLIPESLG 263 (667)
Q Consensus 190 ~--~~l~~L~~L~L~~n~l~~~--~p-~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 263 (667)
+ .++++|++|+|++|.+.+. ++ ..+.++++|+.|++++|.+.+..| ..+..+++|++|+|++|.++ .+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 4 7889999999999988731 22 334678899999999999988775 45677899999999999998 4676665
Q ss_pred cccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCC
Q 042735 264 NLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGR 304 (667)
Q Consensus 264 ~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~ 304 (667)
++|+.|++++|++.+. |. +..+++|++|++++|++++
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7899999999987665 66 8899999999999998865
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-29 Score=256.31 Aligned_cols=256 Identities=19% Similarity=0.190 Sum_probs=156.9
Q ss_pred CcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEccc
Q 042735 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALEN 83 (667)
Q Consensus 5 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~ 83 (667)
++.++++.+.+....+..+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..| +.. .+|++|+|++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4556667777765555556677789999999999887777888889999999999988876544 433 4577778777
Q ss_pred ccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccC
Q 042735 84 NHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIA 163 (667)
Q Consensus 84 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 163 (667)
|.+++.. ..++|+.|++++|.+++..+. .+++|+.|++++|++++..+..++.+++|++|++++|.+.+..+
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 7776432 225666666666666554332 24556666666666665555566666666666666666655544
Q ss_pred ccC-CCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCC
Q 042735 164 SNW-GKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLT 242 (667)
Q Consensus 164 ~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 242 (667)
..+ ..+++|+.|+|++|.+++. + ....+++|++|+|++|.+.+. |..+..+++|+.|++++|.+. .+|..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 444 2456666666666665543 1 122355566666666655543 333555555666666655555 3444555555
Q ss_pred CCCeeeccCCcCC-ccchhhhhcccCCCeecCC
Q 042735 243 KLEFLNLSTNRFS-SLIPESLGNLLKLHYLDLS 274 (667)
Q Consensus 243 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~ls 274 (667)
+|+.|++++|.+. +.+|.++..+++|+.++++
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 5555555555555 4445555555555555554
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-29 Score=276.21 Aligned_cols=303 Identities=19% Similarity=0.163 Sum_probs=161.0
Q ss_pred CCCCcEEeccCCcCcC----CCCccccCCCCCCEEEccCccccccCCcccc-CCC----CCCeeeccccccce----eCC
Q 042735 2 LTNLRELHLRDNYLTG----LIPTETWNLKSLVKLGLGGNQFRGSLPSSVG-NLS----SLRYLFLFENNLSG----SIP 68 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~----~L~~L~L~~n~l~~----~~p 68 (667)
+++|+.|+|++|.++. .++..+..+++|++|+|++|.+.+..+..+. .++ +|++|+|++|+++. .+|
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 3566777777776653 2344555666677777777766643333332 344 46677777666652 334
Q ss_pred CCCcc-cccCEEEcccccccccCCccccC-----CCCccEEEeeCcccccc----cCccCCCCCCCcEEEccCCcccccc
Q 042735 69 PSVGN-LMLTVLALENNHFTGNLRHNICR-----NGALERVIVGGNHFRGP----IPKCLRNCPNLVRISLEGNNMRGTI 138 (667)
Q Consensus 69 ~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~L~~n~~~~~~ 138 (667)
..+.. .+|+.|+|++|.++...+..+.. ..+|+.|++++|.+++. ++..+..+++|++|+|++|.++...
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 44444 34666666666665433322221 34566666666666543 2444555566666666666665433
Q ss_pred chhhh-----cCCCCCEEECcCCccCCc----cCccCCCCCCCCEEEccCCcCCCCc-----CccccCCCCcCeeeccCC
Q 042735 139 SEAFG-----IYLNLTFLDISDNNFFGE----IASNWGKCPKLSTLNVSMNNITRSI-----PLEIGNLSTLNEFDLSLN 204 (667)
Q Consensus 139 ~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~L~~n 204 (667)
...+. ..++|++|++++|.+.+. ++..+..+++|+.|++++|.+.... +..+..+++|++|++++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 33332 244666666666665542 3444555566666666666554321 111224556666666666
Q ss_pred ccccc----CCccccCCcccceeecccccccccCcccccC-----CCCCCeeeccCCcCCcc----chhhhhcccCCCee
Q 042735 205 HIVGK----IPKEFGKLNSLTKLILRGNQLIGHLPSEIGS-----LTKLEFLNLSTNRFSSL----IPESLGNLLKLHYL 271 (667)
Q Consensus 205 ~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L 271 (667)
.+.+. ++..+..+++|+.|++++|.+.+..+..+.. .++|++|++++|.+++. ++..+..+++|+.|
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence 55542 3444555566666666666554332222221 24566666666665543 34444455566666
Q ss_pred cCCCccCccccchhhhc-----CCCCCEEECcCCCCCC
Q 042735 272 DLSKYQFIQELPKELGK-----LVQLSELELSHNFLGR 304 (667)
Q Consensus 272 ~ls~n~~~~~~p~~l~~-----l~~L~~L~l~~n~l~~ 304 (667)
++++|++.+..+..+.. .++|++|++++|.++.
T Consensus 347 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 66666554433333332 4456666666665543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-28 Score=252.95 Aligned_cols=248 Identities=22% Similarity=0.215 Sum_probs=199.2
Q ss_pred ccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccc-eeCCCCCc--------ccccCEEEcccccccccCCcc
Q 042735 23 TWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLS-GSIPPSVG--------NLMLTVLALENNHFTGNLRHN 93 (667)
Q Consensus 23 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~--------~~~L~~L~L~~n~l~~~~~~~ 93 (667)
++..++|+.|++++|.+ .+|..+... |+.|+|++|++. ..+|..+. ..+|++|+|++|.+++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45677888888888888 577766544 888888888884 45665543 356889999999988888877
Q ss_pred c--cCCCCccEEEeeCcccccccCccCCCC-----CCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCc--cCc
Q 042735 94 I--CRNGALERVIVGGNHFRGPIPKCLRNC-----PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGE--IAS 164 (667)
Q Consensus 94 ~--~~~~~L~~L~l~~n~~~~~~p~~l~~l-----~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~ 164 (667)
+ ..+.+|+.|++++|.+++. |..+..+ ++|++|+|++|++++..+..|+.+++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 6 7888999999999998877 7767666 8999999999999888888899999999999999987765 333
Q ss_pred cC--CCCCCCCEEEccCCcCCCC--cC-ccccCCCCcCeeeccCCcccccCC-ccccCCcccceeecccccccccCcccc
Q 042735 165 NW--GKCPKLSTLNVSMNNITRS--IP-LEIGNLSTLNEFDLSLNHIVGKIP-KEFGKLNSLTKLILRGNQLIGHLPSEI 238 (667)
Q Consensus 165 ~~--~~l~~L~~L~L~~n~l~~~--~p-~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~ 238 (667)
.+ ..+++|+.|+|++|.+++. ++ ..+.++++|++|+|++|.+.+..| ..+..+++|+.|+|++|.++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 44 7889999999999998742 22 334678899999999999988765 45677899999999999987 677766
Q ss_pred cCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCcc
Q 042735 239 GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQ 280 (667)
Q Consensus 239 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~ 280 (667)
. ++|++|+|++|++++. |. +..+++|+.|++++|++.+
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5 8899999999999886 65 8889999999999998754
|
| >2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-28 Score=250.98 Aligned_cols=222 Identities=16% Similarity=0.195 Sum_probs=157.3
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCC----chHHhHHHHHHHHHHHHhcC---------CCCeeEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPS----DQIADQKEFFAEIEALTKIR---------HRNIVKFY 487 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~----~~~~~~~~~~~E~~~l~~l~---------H~niv~~~ 487 (667)
++|+..+.||+|+||+||+|+. +++.||||++...... ......+.+.+|++++++++ |||||++.
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~ 98 (336)
T 2vuw_A 20 EKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN 98 (336)
T ss_dssp HHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred ccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence 5688899999999999999988 6789999998654221 11122357889999998886 88888888
Q ss_pred EEEE------------------------------eCCceEEEEEecCCCChHHHhccc----------------------
Q 042735 488 GFCS------------------------------HARHSILIYEYLKRGSLATNLSND---------------------- 515 (667)
Q Consensus 488 g~~~------------------------------~~~~~~lv~ey~~~g~L~~~l~~~---------------------- 515 (667)
+++. +.+..++||||+++|++.+.+...
T Consensus 99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~lH 178 (336)
T 2vuw_A 99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAE 178 (336)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 8754 267899999999999765544221
Q ss_pred --cCCcccccccCCeeecCCC--------------------ceEEecccccccccCCCCCcccccccccccCCCC-----
Q 042735 516 --AAAEELDISSKNVLLDLEH--------------------KAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDY----- 568 (667)
Q Consensus 516 --~~~~~~dlk~~NiLld~~~--------------------~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE~----- 568 (667)
....|.||||+|||++.++ .+||+|||+|+..... ..+||+.|||||.
T Consensus 179 ~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-----~~~gt~~y~aPE~~~g~~ 253 (336)
T 2vuw_A 179 ASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-----IVVFCDVSMDEDLFTGDG 253 (336)
T ss_dssp HHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-----EEECCCCTTCSGGGCCCS
T ss_pred HhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-----cEEEeecccChhhhcCCC
Confidence 1233569999999999887 8999999999976532 3589999999993
Q ss_pred CCCchHHHHHHH-HHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCC
Q 042735 569 RKKCDVYSFRVL-ALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPT 647 (667)
Q Consensus 569 ~~~~DV~sfGvv-l~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt 647 (667)
+.++||||+|++ .+++++|..||....|. .......... .........+.......++.+++.+||+.| |
T Consensus 254 ~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~dli~~~L~~d-----s 324 (336)
T 2vuw_A 254 DYQFDIYRLMKKENNNRWGEYHPYSNVLWL---HYLTDKMLKQ-MTFKTKCNTPAMKQIKRKIQEFHRTMLNFS-----S 324 (336)
T ss_dssp SHHHHHHHHHHHHHTTCTTSCCTHHHHHHH---HHHHHHHHHT-CCCSSCCCSHHHHHHHHHHHHHHHHGGGSS-----S
T ss_pred ccceehhhhhCCCCcccccccCCCcchhhh---hHHHHhhhhh-hccCcccchhhhhhcCHHHHHHHHHHhccC-----C
Confidence 457999998777 78889999886421110 0000011101 111111111222334557888999999976 9
Q ss_pred HHHHH-HHHHH
Q 042735 648 MQTIT-QQLLF 657 (667)
Q Consensus 648 ~~ev~-~~l~~ 657 (667)
++|++ +|.||
T Consensus 325 a~e~l~~Hp~f 335 (336)
T 2vuw_A 325 ATDLLCQHSLF 335 (336)
T ss_dssp HHHHHHHCGGG
T ss_pred HHHHHhcCCCc
Confidence 99999 88886
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-29 Score=274.79 Aligned_cols=307 Identities=17% Similarity=0.117 Sum_probs=227.0
Q ss_pred CCCCcEEeccCCcCcCCCCcc-ccCCCCCCEEEccCccccc----cCCccccCCCCCCeeeccccccceeCCCCCcc--c
Q 042735 2 LTNLRELHLRDNYLTGLIPTE-TWNLKSLVKLGLGGNQFRG----SLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN--L 74 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~--~ 74 (667)
+++|+.|+|++|.++...... +..+++|++|+|++|++++ .++..+..+++|++|+|++|.+.+..+..+.. .
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 457888999999887644333 6678899999999998874 34667788899999999999886533322211 1
Q ss_pred ----ccCEEEcccccccc----cCCccccCCCCccEEEeeCcccccccCcc-----CCCCCCCcEEEccCCcccccc---
Q 042735 75 ----MLTVLALENNHFTG----NLRHNICRNGALERVIVGGNHFRGPIPKC-----LRNCPNLVRISLEGNNMRGTI--- 138 (667)
Q Consensus 75 ----~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~p~~-----l~~l~~L~~L~L~~n~~~~~~--- 138 (667)
+|++|+|++|.++. .++..+..+++|+.|++++|.+++..+.. ....++|++|+|++|++++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 48999999998874 45777888889999999999887543332 233568999999999887643
Q ss_pred -chhhhcCCCCCEEECcCCccCCccCccCC-----CCCCCCEEEccCCcCCCC----cCccccCCCCcCeeeccCCcccc
Q 042735 139 -SEAFGIYLNLTFLDISDNNFFGEIASNWG-----KCPKLSTLNVSMNNITRS----IPLEIGNLSTLNEFDLSLNHIVG 208 (667)
Q Consensus 139 -~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~ 208 (667)
+..+..+++|++|++++|.+....+..+. ..++|+.|++++|.++.. ++..+..+++|++|++++|.+.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 55667788999999999887654443332 356899999999988763 46667788899999999988765
Q ss_pred cC-----CccccCCcccceeeccccccccc----CcccccCCCCCCeeeccCCcCCccchhhhhcc-----cCCCeecCC
Q 042735 209 KI-----PKEFGKLNSLTKLILRGNQLIGH----LPSEIGSLTKLEFLNLSTNRFSSLIPESLGNL-----LKLHYLDLS 274 (667)
Q Consensus 209 ~~-----p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~ls 274 (667)
.. +..+..+++|+.|++++|.++.. ++..+..+++|++|++++|.+.+..+..+... ++|+.|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 32 22234578899999999988753 56677778899999999998876545444432 589999999
Q ss_pred CccCccc----cchhhhcCCCCCEEECcCCCCCCcCcc
Q 042735 275 KYQFIQE----LPKELGKLVQLSELELSHNFLGREIPS 308 (667)
Q Consensus 275 ~n~~~~~----~p~~l~~l~~L~~L~l~~n~l~~~ip~ 308 (667)
+|.+.+. ++..+..+++|++|++++|.++...+.
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 9887655 567777888999999999988654443
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-28 Score=259.04 Aligned_cols=217 Identities=12% Similarity=0.052 Sum_probs=147.9
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCC-CCe---------------
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH-RNI--------------- 483 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H-~ni--------------- 483 (667)
..|...+.||+|+||.||+|.. .+++.||||++...... .....+.|.+|+.+++.++| +|.
T Consensus 78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~-~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T 3dzo_A 78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERP-PSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 156 (413)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC-----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCc-cHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence 3566778999999999999985 56889999988743222 22334679999999999987 221
Q ss_pred ------eEEEEEEEe-----CCceEEEEEecCCCChHHHhcc--------c-----------------------cCCccc
Q 042735 484 ------VKFYGFCSH-----ARHSILIYEYLKRGSLATNLSN--------D-----------------------AAAEEL 521 (667)
Q Consensus 484 ------v~~~g~~~~-----~~~~~lv~ey~~~g~L~~~l~~--------~-----------------------~~~~~~ 521 (667)
..+..++.. ....+++|++ .+|+|.+.+.. . ....|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHr 235 (413)
T 3dzo_A 157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPR-MQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHT 235 (413)
T ss_dssp EECCC---------------CCSEEEEEEC-CSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECS
T ss_pred cccCCCCccccccCCCccccccceEEEeeh-hcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 111111111 2234566665 45788876630 0 011245
Q ss_pred ccccCCeeecCCCceEEecccccccccCCCCCcccccccccccCCCCC----------------CCchHHHHHHHHHHHH
Q 042735 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYR----------------KKCDVYSFRVLALEVI 585 (667)
Q Consensus 522 dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE~~----------------~~~DV~sfGvvl~Ell 585 (667)
||||+|||++.++.+||+|||+++..... ....+| +.|+|||.. .++|||||||++|||+
T Consensus 236 DiKp~NILl~~~~~~kL~DFG~a~~~~~~---~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~ell 311 (413)
T 3dzo_A 236 YLRPVDIVLDQRGGVFLTGFEHLVRDGAS---AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIW 311 (413)
T ss_dssp CCCGGGEEECTTCCEEECCGGGCEETTEE---ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHH
T ss_pred CcccceEEEecCCeEEEEeccceeecCCc---cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHH
Confidence 99999999999999999999999865432 345678 999999932 3899999999999999
Q ss_pred hCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 586 KGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 586 tG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
||+.||......... ...+... + ..+ ..+.+++.+||+.||++|||+.|++++.||..
T Consensus 312 tg~~Pf~~~~~~~~~--------~~~~~~~-~-~~~------~~~~~li~~~l~~dP~~Rpt~~~~l~~~~~~~ 369 (413)
T 3dzo_A 312 CADLPNTDDAALGGS--------EWIFRSC-K-NIP------QPVRALLEGFLRYPKEDRLLPLQAMETPEYEQ 369 (413)
T ss_dssp HSSCCCCTTGGGSCS--------GGGGSSC-C-CCC------HHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHH
T ss_pred HCCCCCCCcchhhhH--------HHHHhhc-c-cCC------HHHHHHHHHHccCChhhCcCHHHHHhCHHHHH
Confidence 999998643221111 1111110 1 111 24667888999999999999999998877754
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-28 Score=249.64 Aligned_cols=242 Identities=19% Similarity=0.175 Sum_probs=211.2
Q ss_pred CCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEc
Q 042735 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLAL 81 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L 81 (667)
+++|+.|+|++|.+++..|..|.++++|++|+|++|++++..+ +..+++|++|+|++|++++..+. ..|+.|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~----~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEEC----TTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCC----CCcCEEEC
Confidence 4589999999999999888899999999999999999987654 99999999999999999864322 57999999
Q ss_pred ccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhh-hcCCCCCEEECcCCccCC
Q 042735 82 ENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAF-GIYLNLTFLDISDNNFFG 160 (667)
Q Consensus 82 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~ 160 (667)
++|.+++..+.. +.+|+.|++++|++++..+..+..+++|+.|+|++|.+++..+..+ ..+++|++|++++|.+.+
T Consensus 107 ~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 999998765543 5789999999999999888889999999999999999998877776 478999999999999976
Q ss_pred ccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeeccccccc-ccCccccc
Q 042735 161 EIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLI-GHLPSEIG 239 (667)
Q Consensus 161 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~ 239 (667)
. + ....+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+.+ +|..+..+++|+.|++++|.+. +.+|..++
T Consensus 184 ~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 184 V-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp E-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred c-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 5 3 33458999999999999986 45569999999999999999985 6778999999999999999998 77888899
Q ss_pred CCCCCCeeeccCC-cCCc
Q 042735 240 SLTKLEFLNLSTN-RFSS 256 (667)
Q Consensus 240 ~l~~L~~L~Ls~N-~l~~ 256 (667)
.+++|+.|++++| .+++
T Consensus 260 ~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 260 KNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp TCHHHHHHHHHHHHHHHS
T ss_pred ccccceEEECCCchhccC
Confidence 9999999998843 3444
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=251.09 Aligned_cols=267 Identities=25% Similarity=0.270 Sum_probs=222.9
Q ss_pred CCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEccc
Q 042735 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALEN 83 (667)
Q Consensus 4 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~ 83 (667)
+++.|++++|.++. +|..+. ++|++|+|++|+|+ .+|. .+++|++|+|++|+|+ .+|. ...+|+.|+|++
T Consensus 41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV--LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC--CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC--CCCCCCEEECcC
Confidence 58999999999985 566554 89999999999998 4665 5899999999999998 4666 346799999999
Q ss_pred ccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccC
Q 042735 84 NHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIA 163 (667)
Q Consensus 84 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 163 (667)
|.+++. |. ...+|+.|++++|++++ +|.. +++|++|+|++|++++. |. .+.+|+.|++++|.+.+ +|
T Consensus 111 N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~ 177 (622)
T 3g06_A 111 NPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP 177 (622)
T ss_dssp CCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC
T ss_pred CcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc
Confidence 999864 33 56899999999999986 4543 58999999999999864 32 45789999999999976 55
Q ss_pred ccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCC
Q 042735 164 SNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTK 243 (667)
Q Consensus 164 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 243 (667)
..+++|+.|++++|.+++ +|. .+++|+.|++++|.+.. +|. .+++|+.|++++|.+++ +| ..+++
T Consensus 178 ---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~ 242 (622)
T 3g06_A 178 ---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSE 242 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTT
T ss_pred ---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCc
Confidence 457899999999999986 443 24789999999999874 454 35889999999999986 55 46789
Q ss_pred CCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCcCcccccCC
Q 042735 244 LEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSM 313 (667)
Q Consensus 244 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~ 313 (667)
|+.|+|++|.+++. |. .+++|+.|++++|++. .+|..+..+++|+.|++++|++.+.+|..+..+
T Consensus 243 L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 243 LKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CcEEECCCCCCCcC-Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 99999999999864 54 5789999999999976 789999999999999999999998888766544
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-27 Score=260.20 Aligned_cols=234 Identities=20% Similarity=0.195 Sum_probs=192.1
Q ss_pred CCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcccccccccCCccccCCCCccEEEe
Q 042735 27 KSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERVIV 105 (667)
Q Consensus 27 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 105 (667)
++|+.|+|++|.+++..|..|+.+++|++|+|++|.+++..| +.. .+|+.|+|++|.+++..+ .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 378888888888887777778888888888888888776555 444 458888888887765432 367888888
Q ss_pred eCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCC-CCCCCCEEEccCCcCCC
Q 042735 106 GGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWG-KCPKLSTLNVSMNNITR 184 (667)
Q Consensus 106 ~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~ 184 (667)
++|.+++..+. .+++|+.|+|++|.+++..+..++.+++|++|+|++|.+.+..|..+. .+++|+.|+|++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 88888776543 468899999999999988888899999999999999999888888776 78999999999999987
Q ss_pred CcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCC-ccchhhhh
Q 042735 185 SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFS-SLIPESLG 263 (667)
Q Consensus 185 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~ 263 (667)
..+ +..+++|+.|+|++|.+.+. |+.|..+++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|.++.
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred ccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 633 44689999999999999875 4458899999999999999985 6778899999999999999998 66788888
Q ss_pred cccCCCeecCC
Q 042735 264 NLLKLHYLDLS 274 (667)
Q Consensus 264 ~l~~L~~L~ls 274 (667)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 88888888875
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-27 Score=257.16 Aligned_cols=236 Identities=19% Similarity=0.167 Sum_probs=190.6
Q ss_pred CCCCCCeeeccccccceeCCCCCcc-cccCEEEcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEE
Q 042735 49 NLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRI 127 (667)
Q Consensus 49 ~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 127 (667)
.+++|++|+|++|.+++..|..+.. .+|++|+|++|.+++..+ +..+++|+.|++++|.+++..+ .++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 3447999999999888776777766 469999999998887665 7888889999999998876432 3788999
Q ss_pred EccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCcccc-CCCCcCeeeccCCcc
Q 042735 128 SLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIG-NLSTLNEFDLSLNHI 206 (667)
Q Consensus 128 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l 206 (667)
+|++|.+++..+. .+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+++..|..+. ++++|+.|+|++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999988876654 457889999999998888888888888999999999998887777775 788899999999988
Q ss_pred cccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCc-cccchh
Q 042735 207 VGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFI-QELPKE 285 (667)
Q Consensus 207 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~-~~~p~~ 285 (667)
.+.. .+..+++|+.|+|++|.+++.+| .++.+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|.+
T Consensus 182 ~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred cccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 7663 24468889999999998886444 58888899999999999886 5777888888999999988877 677788
Q ss_pred hhcCCCCCEEECc
Q 042735 286 LGKLVQLSELELS 298 (667)
Q Consensus 286 l~~l~~L~~L~l~ 298 (667)
+..++.|+.++++
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 8888888877775
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-24 Score=236.62 Aligned_cols=248 Identities=26% Similarity=0.303 Sum_probs=208.4
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcc
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALE 82 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~ 82 (667)
++|+.|+|++|.|+.+ |. .+++|++|+|++|+|+. +|. .+++|++|+|++|++++ +|. ...+|+.|+|+
T Consensus 61 ~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~--~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA--LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC--CCTTCCEEECC
T ss_pred CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC--CCCCcCEEECC
Confidence 5799999999999965 44 57999999999999984 665 68999999999999985 555 33569999999
Q ss_pred cccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCcc
Q 042735 83 NNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEI 162 (667)
Q Consensus 83 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 162 (667)
+|.+++ +|.. .++|+.|++++|++++. |. .+++|+.|++++|.+++. | ..+++|+.|++++|.+.+ +
T Consensus 130 ~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~-l 196 (622)
T 3g06_A 130 GNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLAS-L 196 (622)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-C
T ss_pred CCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCC-C
Confidence 999986 4443 48999999999999863 43 357899999999999864 4 567899999999999975 4
Q ss_pred CccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCC
Q 042735 163 ASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLT 242 (667)
Q Consensus 163 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 242 (667)
|. .+++|+.|++++|.++. +|. .+++|+.|+|++|.+.+ +| ..+++|+.|+|++|.++ .+|. .++
T Consensus 197 ~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~ 261 (622)
T 3g06_A 197 PT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPS 261 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCT
T ss_pred CC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccc
Confidence 44 35789999999999985 443 34789999999999986 55 45689999999999998 4555 678
Q ss_pred CCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCC
Q 042735 243 KLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLV 290 (667)
Q Consensus 243 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~ 290 (667)
+|+.|+|++|+++ .+|..+.++++|+.|++++|++.+..|..+..+.
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 9999999999999 5688999999999999999999999998877664
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-24 Score=216.22 Aligned_cols=206 Identities=20% Similarity=0.236 Sum_probs=143.3
Q ss_pred CccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEcc
Q 042735 99 ALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVS 178 (667)
Q Consensus 99 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 178 (667)
+++.|++++|++++..+..+.++++|++|+|++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34455555555554444556667777777777777766666667777777777777777766666677777777777777
Q ss_pred CCcCCCCcCccccCCCCcCeeeccCCccccc-CCccccCCcccceeecccccccccCcccccCCCCCC----eeeccCCc
Q 042735 179 MNNITRSIPLEIGNLSTLNEFDLSLNHIVGK-IPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLE----FLNLSTNR 253 (667)
Q Consensus 179 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~----~L~Ls~N~ 253 (667)
+|.+.+..+..+.++++|++|++++|.+.+. +|..|..+++|+.|++++|++.+..+..+..+++|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 7777766665677777777777777777653 467777777777777777777766666666666665 77888888
Q ss_pred CCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCc
Q 042735 254 FSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGRE 305 (667)
Q Consensus 254 l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ 305 (667)
+++..+..+. ..+|+.|++++|++.+..+..+..+++|+.|++++|++...
T Consensus 189 l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 8765554443 34788888888887665555667788888888888887654
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-24 Score=214.62 Aligned_cols=223 Identities=18% Similarity=0.153 Sum_probs=187.8
Q ss_pred EEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEccccc
Q 042735 7 ELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALENNH 85 (667)
Q Consensus 7 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~ 85 (667)
..+..+..++. +|..+. ++|++|+|++|++++..+..|.++++|++|+|++|++++..+..+.. .+|+.|+|++|.
T Consensus 11 ~~~c~~~~l~~-ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCSS-CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCccc-cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 45666666764 455443 57999999999999877778999999999999999998777767766 569999999999
Q ss_pred ccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccc-cchhhhcCCCCCEEECcCCccCCccCc
Q 042735 86 FTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGT-ISEAFGIYLNLTFLDISDNNFFGEIAS 164 (667)
Q Consensus 86 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~ 164 (667)
+++..+..+.++.+|+.|++++|++.+..+..+.++++|++|+|++|.+++. +|..++.+++|++|++++|.+.+..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 9888888899999999999999999887777899999999999999999874 588999999999999999999887777
Q ss_pred cCCCCCCCC----EEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeeccccccccc
Q 042735 165 NWGKCPKLS----TLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGH 233 (667)
Q Consensus 165 ~~~~l~~L~----~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 233 (667)
.+..+.+|+ .|++++|.+.+..+..+ ...+|+.|+|++|.+.+..+..|..+++|+.|++++|.+...
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred HhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 777777776 89999999986555544 445899999999999877777789999999999999998753
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=209.14 Aligned_cols=201 Identities=24% Similarity=0.263 Sum_probs=138.3
Q ss_pred ccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccC
Q 042735 100 LERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179 (667)
Q Consensus 100 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 179 (667)
.+.+++++++++. +|..+. ++|+.|+|++|++++..+..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 3445555555542 343332 4567777777777666656677777777777777776655555566777777777777
Q ss_pred CcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccch
Q 042735 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIP 259 (667)
Q Consensus 180 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 259 (667)
|.+.+..+..+.++++|++|+|++|.+.+..+..|..+++|+.|+|++|.+.+..+..|+.+++|+.|+|++|.+++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 77776655666777777777777777776666667777777777777777776555567777777777777777777666
Q ss_pred hhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCC
Q 042735 260 ESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLG 303 (667)
Q Consensus 260 ~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 303 (667)
..|.++++|+.|++++|++.+..+..+..+++|+.|++++|++.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 66777777777777777766555556777778888888888764
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-24 Score=213.73 Aligned_cols=208 Identities=21% Similarity=0.227 Sum_probs=151.6
Q ss_pred CCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEE
Q 042735 97 NGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLN 176 (667)
Q Consensus 97 ~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 176 (667)
+.+|+.|++.+|.+... ..+..+++|+.|+|++|.+++. ..+..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 34455555555554421 2466677777777777777653 3677777788888888877766666677778888888
Q ss_pred ccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCc
Q 042735 177 VSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSS 256 (667)
Q Consensus 177 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 256 (667)
+++|.+++..+..+.++++|++|++++|.+.+..+..|+.+++|+.|++++|.+++..+..++.+++|+.|++++|.+++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 88888777666667778888888888887776666667778888888888888876666667778888888888888887
Q ss_pred cchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCCCcCcccccCCcc
Q 042735 257 LIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMEC 315 (667)
Q Consensus 257 ~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ip~~~~~~~~ 315 (667)
..|..+..+++|+.|++++|.+.+ .+++|+.|+++.|.+.+.+|..++.+..
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 777777778888888888887653 3456777788888888888877766543
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-24 Score=213.64 Aligned_cols=210 Identities=21% Similarity=0.289 Sum_probs=150.7
Q ss_pred cCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcccccccccCCccccCCCCccEE
Q 042735 24 WNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERV 103 (667)
Q Consensus 24 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 103 (667)
..+++|+.|++++|.+.. + ..+..+++|++|+|++|.+++ + ..+..+++|+.|
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~------------------------~~l~~l~~L~~L 90 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I------------------------SALKELTNLTYL 90 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C------------------------GGGTTCTTCCEE
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c------------------------hhhcCCCCCCEE
Confidence 345556666666665542 2 235555556666665555543 1 234455566666
Q ss_pred EeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCC
Q 042735 104 IVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNIT 183 (667)
Q Consensus 104 ~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 183 (667)
++++|.+++..+..+.++++|++|+|++|++++..+..|+.+++|++|++++|.+.+..+..+..+++|+.|++++|+++
T Consensus 91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 66666666666666777888888888888887777777788888888888888887766667788888888888888888
Q ss_pred CCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhh
Q 042735 184 RSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLG 263 (667)
Q Consensus 184 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 263 (667)
+..+..+.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+ .+++|+.|++..|.++|.+|.+++
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccc
Confidence 7776667888888888888888887777778888888888888887764 355788888888888888888877
Q ss_pred cccC
Q 042735 264 NLLK 267 (667)
Q Consensus 264 ~l~~ 267 (667)
.+..
T Consensus 244 ~~~~ 247 (272)
T 3rfs_A 244 SVAP 247 (272)
T ss_dssp CBCG
T ss_pred ccCC
Confidence 6543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-23 Score=205.94 Aligned_cols=156 Identities=22% Similarity=0.264 Sum_probs=71.7
Q ss_pred CccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEcc
Q 042735 99 ALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVS 178 (667)
Q Consensus 99 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 178 (667)
+|+.|++++|.++...+..+.++++|++|+|++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|+|+
T Consensus 62 ~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 141 (270)
T 2o6q_A 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC
Confidence 33333333333333323333445555555555555544444444444555555555555444444444444555555555
Q ss_pred CCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcC
Q 042735 179 MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRF 254 (667)
Q Consensus 179 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 254 (667)
+|.+++..+..|..+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|+.|+|++|.+
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 5544443333344444445555544444443333444444444444444444433333344444444444444444
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=206.89 Aligned_cols=202 Identities=24% Similarity=0.254 Sum_probs=159.3
Q ss_pred cCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCE
Q 042735 95 CRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLST 174 (667)
Q Consensus 95 ~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 174 (667)
..+.+++.+++.++.++. +|..+. ++++.|+|++|.+++..+..|..+++|++|+|++|.+.+..+. ..+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred cccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 345566666666666653 444443 5788888888888877777888888888888888887654332 67888888
Q ss_pred EEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcC
Q 042735 175 LNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRF 254 (667)
Q Consensus 175 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 254 (667)
|+|++|.+. .+|..+.++++|++|+|++|++.+..+..|.++++|+.|+|++|++.+..+..|..+++|+.|+|++|++
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 888888887 5677788888888888888888877777888888888888888888877777788888899999999988
Q ss_pred CccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCC
Q 042735 255 SSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLG 303 (667)
Q Consensus 255 ~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 303 (667)
++..+..+..+++|+.|++++|++. .+|..+..+.+|+.|++++|++.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 8776677788888999999888865 67888888888999999998874
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-25 Score=232.91 Aligned_cols=253 Identities=15% Similarity=0.137 Sum_probs=162.8
Q ss_pred EEeccCCcCcCCCCccccCCCCCCEEEccCccccccCC----ccccCCC-CCCeeeccccccceeCCCCCcc------cc
Q 042735 7 ELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLP----SSVGNLS-SLRYLFLFENNLSGSIPPSVGN------LM 75 (667)
Q Consensus 7 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~------~~ 75 (667)
.++|++|.+++.+|..+...++|++|+|++|.+++..+ ..|.+++ +|++|+|++|.+++..+..+.. .+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 47899999999888877777789999999999997666 7788898 8999999999998766655544 46
Q ss_pred cCEEEcccccccccCCccccC----C-CCccEEEeeCcccccccCcc----CCC-CCCCcEEEccCCcccccc----chh
Q 042735 76 LTVLALENNHFTGNLRHNICR----N-GALERVIVGGNHFRGPIPKC----LRN-CPNLVRISLEGNNMRGTI----SEA 141 (667)
Q Consensus 76 L~~L~L~~n~l~~~~~~~~~~----~-~~L~~L~l~~n~~~~~~p~~----l~~-l~~L~~L~L~~n~~~~~~----~~~ 141 (667)
|+.|+|++|.+++..+..+.. . .+|+.|++++|.+++..+.. +.. .++|++|+|++|.++... +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 888888888887665554333 2 67777777777776554433 223 247777777777776432 233
Q ss_pred hhcCC-CCCEEECcCCccCCccCccC----CCC-CCCCEEEccCCcCCCC----cCccccC-CCCcCeeeccCCcccccC
Q 042735 142 FGIYL-NLTFLDISDNNFFGEIASNW----GKC-PKLSTLNVSMNNITRS----IPLEIGN-LSTLNEFDLSLNHIVGKI 210 (667)
Q Consensus 142 ~~~l~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~----~p~~~~~-l~~L~~L~L~~n~l~~~~ 210 (667)
+..++ +|++|+|++|.+.+..+..+ ..+ ++|+.|+|++|.+... ++..+.. .++|++|+|++|.+.+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 34444 67777777776655444322 233 4677777777766542 2333433 236666666666665433
Q ss_pred C----ccccCCcccceeecccccccccC-------cccccCCCCCCeeeccCCcCCccch
Q 042735 211 P----KEFGKLNSLTKLILRGNQLIGHL-------PSEIGSLTKLEFLNLSTNRFSSLIP 259 (667)
Q Consensus 211 p----~~~~~l~~L~~L~L~~n~l~~~~-------p~~~~~l~~L~~L~Ls~N~l~~~~p 259 (667)
+ ..+..+++|+.|+|++|.+.+.. +..+..+++|+.||+++|.+....+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 2 22355566666666666633222 2234455666666666666654433
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=205.99 Aligned_cols=202 Identities=18% Similarity=0.160 Sum_probs=103.5
Q ss_pred cCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcccccccccCCccccCCCCccEE
Q 042735 24 WNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERV 103 (667)
Q Consensus 24 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 103 (667)
.++++|+.+++++|.++ .+|..+. ++|+.|+|++|.+++..| ..+..+++|+.|
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~-----------------------~~~~~l~~L~~L 60 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSL-----------------------ATLMPYTRLTQL 60 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEG-----------------------GGGTTCTTCCEE
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCH-----------------------HHhhcCCCCCEE
Confidence 34555555555555554 2343332 345555555554443333 333333344444
Q ss_pred EeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCC
Q 042735 104 IVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNIT 183 (667)
Q Consensus 104 ~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 183 (667)
++++|.+++..+ ...+++|+.|+|++|+++ .+|..+..+++|++|++++|++.+..+..|..+++|+.|+|++|+++
T Consensus 61 ~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 61 NLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp ECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred ECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 444444333222 145556666666666655 33444555555555555555555544455555555555555555555
Q ss_pred CCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCC
Q 042735 184 RSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFS 255 (667)
Q Consensus 184 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 255 (667)
+..+..|..+++|+.|+|++|++.+..+..|..+++|+.|+|++|++. .+|..+..+++|+.|+|++|.+.
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 544444555555555555555555444444555555555555555554 34444555555555555555553
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-24 Score=231.43 Aligned_cols=188 Identities=19% Similarity=0.221 Sum_probs=130.3
Q ss_pred CCCCCCcEEEccCCcccc----ccchhhhcCCCCCEEECcCCccCCccCcc----CCCC---------CCCCEEEccCCc
Q 042735 119 RNCPNLVRISLEGNNMRG----TISEAFGIYLNLTFLDISDNNFFGEIASN----WGKC---------PKLSTLNVSMNN 181 (667)
Q Consensus 119 ~~l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l---------~~L~~L~L~~n~ 181 (667)
..+++|++|+|++|.+++ .++..+..+++|++|+|++|.+....+.. +..+ ++|++|+|++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 455556666666665554 34455555666666666666554222222 2222 677777777777
Q ss_pred CC-CCcC---ccccCCCCcCeeeccCCcccc-----cCCccccCCcccceeeccccccc----ccCcccccCCCCCCeee
Q 042735 182 IT-RSIP---LEIGNLSTLNEFDLSLNHIVG-----KIPKEFGKLNSLTKLILRGNQLI----GHLPSEIGSLTKLEFLN 248 (667)
Q Consensus 182 l~-~~~p---~~~~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~ 248 (667)
++ +.++ ..+..+++|++|+|++|.+.. ..+..+..+++|+.|+|++|.++ ..+|..+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 75 3333 356667788888888887752 33446778888888888888885 56777888889999999
Q ss_pred ccCCcCCcc----chhhhhc--ccCCCeecCCCccCcc----ccchhh-hcCCCCCEEECcCCCCCCcC
Q 042735 249 LSTNRFSSL----IPESLGN--LLKLHYLDLSKYQFIQ----ELPKEL-GKLVQLSELELSHNFLGREI 306 (667)
Q Consensus 249 Ls~N~l~~~----~p~~~~~--l~~L~~L~ls~n~~~~----~~p~~l-~~l~~L~~L~l~~n~l~~~i 306 (667)
|++|.+++. ++..+.. +++|+.|++++|.+.. .+|..+ .++++|++|++++|.+++..
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 999998765 4566633 8889999999998877 488777 66899999999999887644
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-24 Score=223.32 Aligned_cols=253 Identities=20% Similarity=0.261 Sum_probs=128.3
Q ss_pred CCEEEccCccccccCCccccCC--CCCCeeeccccccceeCCCCCcccccCEEEcccccccccCCccccCCCCccEEEee
Q 042735 29 LVKLGLGGNQFRGSLPSSVGNL--SSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVG 106 (667)
Q Consensus 29 L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 106 (667)
++.|++++|.+. |..+..+ ++|+.|++++|.+.+..+..+...+|+.|+|++|.+++.
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~----------------- 108 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS----------------- 108 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH-----------------
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH-----------------
Confidence 566666666554 3445555 566666666666655544443334455555555554432
Q ss_pred CcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCC-ccCCc-cCccCCCCCCCCEEEccCC-cCC
Q 042735 107 GNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDN-NFFGE-IASNWGKCPKLSTLNVSMN-NIT 183 (667)
Q Consensus 107 ~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~ 183 (667)
.+|..+..+++|++|+|++|.+++..+..++.+++|++|++++| .+.+. ++..+..+++|+.|++++| .++
T Consensus 109 ------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 109 ------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp ------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred ------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 03334444555555555555554444444555555555555555 33321 3333444555555555555 444
Q ss_pred CC-cCccccCCC-CcCeeeccCC--ccc-ccCCccccCCcccceeeccccc-ccccCcccccCCCCCCeeeccCCc-CCc
Q 042735 184 RS-IPLEIGNLS-TLNEFDLSLN--HIV-GKIPKEFGKLNSLTKLILRGNQ-LIGHLPSEIGSLTKLEFLNLSTNR-FSS 256 (667)
Q Consensus 184 ~~-~p~~~~~l~-~L~~L~L~~n--~l~-~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~ 256 (667)
+. ++..+.+++ +|++|++++| .+. +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +..
T Consensus 183 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 183 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 32 334445555 5555555555 222 2334444555666666666665 444445555666666666666663 211
Q ss_pred cchhhhhcccCCCeecCCCccCccccchhhhcC-CCCCEEECcCCCCCCcCccccc
Q 042735 257 LIPESLGNLLKLHYLDLSKYQFIQELPKELGKL-VQLSELELSHNFLGREIPSQIC 311 (667)
Q Consensus 257 ~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l-~~L~~L~l~~n~l~~~ip~~~~ 311 (667)
.....+.++++|+.|++++| +... .+..+ ..|..|++++|.+++..|..++
T Consensus 263 ~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 263 ETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred HHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCccc
Confidence 11123555666666666655 2211 12222 1244555677777666665544
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-25 Score=244.01 Aligned_cols=162 Identities=19% Similarity=0.109 Sum_probs=110.0
Q ss_pred eecccCeEEEEEE-eCCCceEEEEecCCCCC----C--chHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCceEEEE
Q 042735 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLP----S--DQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 429 lg~g~~g~vy~~~-~~~~~~~avk~~~~~~~----~--~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~~lv~ 500 (667)
.+.|+.|.++.++ +-.|+.+|||.+..... . ......++|.+|+++|+++ .|+||+++++++.+++..||||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM 321 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM 321 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence 4566666666653 44578899998864321 1 1123346799999999999 5999999999999999999999
Q ss_pred EecCCCChHHHhccccC---------------------CcccccccCCeeecCCCceEEecccccccccCCCCCcccccc
Q 042735 501 EYLKRGSLATNLSNDAA---------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVG 559 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~---------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~G 559 (667)
||++||+|.+.+..... ..|+||||+|||++.+|.+||+|||+|+.........++.+|
T Consensus 322 Eyv~G~~L~d~i~~~~~l~~~~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~~~~t~vG 401 (569)
T 4azs_A 322 EKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQ 401 (569)
T ss_dssp ECCCSEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCEESCCCGGGEEECTTSCEEECCCTTEESCC---CCSHHHHH
T ss_pred ecCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHCCceeccCchHhEEECCCCCEEEeecccCeeCCCCCccccCcee
Confidence 99999999998875432 224599999999999999999999999987665555667899
Q ss_pred cccccCCC-----CCCCchHHHHHHHHHHHHhCCCC
Q 042735 560 TYRYVAPD-----YRKKCDVYSFRVLALEVIKGKHP 590 (667)
Q Consensus 560 t~~y~aPE-----~~~~~DV~sfGvvl~ElltG~~p 590 (667)
|++||||| +..++|+||.|++++++.+|..+
T Consensus 402 Tp~YmAPE~l~g~~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 402 SFFVFVNELFAENKSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp HHHHHHHHHC-----------------CCCCTTHHH
T ss_pred chhhccHHHhCCCCCCcccccccccchhhhccccch
Confidence 99999999 45679999999999888766443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-24 Score=229.54 Aligned_cols=249 Identities=16% Similarity=0.176 Sum_probs=170.5
Q ss_pred CCccccCCCCCCEEEccCccccccCC----ccccCCCCCCeeecccccc---ceeCCCCCcccccCEEEcccccccccCC
Q 042735 19 IPTETWNLKSLVKLGLGGNQFRGSLP----SSVGNLSSLRYLFLFENNL---SGSIPPSVGNLMLTVLALENNHFTGNLR 91 (667)
Q Consensus 19 ~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~l---~~~~p~~~~~~~L~~L~L~~n~l~~~~~ 91 (667)
++..+..+++|++|+|++|+++...+ ..+..+++|++|+|++|.+ ++.+|..+. .+.
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~----------------~l~ 87 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR----------------LLL 87 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH----------------HHH
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH----------------HHH
Confidence 45556667778888888887775533 3356777788887777533 333333221 001
Q ss_pred ccccCCCCccEEEeeCccccc----ccCccCCCCCCCcEEEccCCccccccchhhh----cC---------CCCCEEECc
Q 042735 92 HNICRNGALERVIVGGNHFRG----PIPKCLRNCPNLVRISLEGNNMRGTISEAFG----IY---------LNLTFLDIS 154 (667)
Q Consensus 92 ~~~~~~~~L~~L~l~~n~~~~----~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~----~l---------~~L~~L~L~ 154 (667)
..+..+++|+.|++++|.+++ .+|..+..+++|++|+|++|.++...+..+. .+ ++|++|+++
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 122455666666666666665 3566677778888888888887644333333 33 788888888
Q ss_pred CCccC-CccC---ccCCCCCCCCEEEccCCcCCC-----CcCccccCCCCcCeeeccCCccc----ccCCccccCCcccc
Q 042735 155 DNNFF-GEIA---SNWGKCPKLSTLNVSMNNITR-----SIPLEIGNLSTLNEFDLSLNHIV----GKIPKEFGKLNSLT 221 (667)
Q Consensus 155 ~n~l~-~~~~---~~~~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~ 221 (667)
+|.+. +.++ ..+..+++|+.|+|++|.++. ..|..+.++++|+.|+|++|.+. +.+|..+..+++|+
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 88876 3333 356677788888888888762 23436778888888888888875 55677788888888
Q ss_pred eeeccccccccc----Ccccc--cCCCCCCeeeccCCcCCc----cchhhh-hcccCCCeecCCCccCccccc
Q 042735 222 KLILRGNQLIGH----LPSEI--GSLTKLEFLNLSTNRFSS----LIPESL-GNLLKLHYLDLSKYQFIQELP 283 (667)
Q Consensus 222 ~L~L~~n~l~~~----~p~~~--~~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~ls~n~~~~~~p 283 (667)
.|+|++|.+.+. ++..+ +.+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++.+..+
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 888888888754 45566 348889999999999887 467776 567899999999998876664
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-24 Score=222.19 Aligned_cols=253 Identities=20% Similarity=0.208 Sum_probs=161.0
Q ss_pred CCcEEeccCCcCcCCCCccccCC--CCCCEEEccCccccccCCccccCCCCCCeeecccccccee-CCCCCcc-cccCEE
Q 042735 4 NLRELHLRDNYLTGLIPTETWNL--KSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGS-IPPSVGN-LMLTVL 79 (667)
Q Consensus 4 ~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~-~~L~~L 79 (667)
.++.+++++|.+. |..+..+ ++++.|++++|.+.+..+. +..+++|++|+|++|.+++. +|..+.. .+|+.|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4788999999886 4566677 8999999999999976655 66799999999999998754 5555444 457777
Q ss_pred EcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCC-ccccc-cchhhhcCCCCCEEECcCC-
Q 042735 80 ALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGN-NMRGT-ISEAFGIYLNLTFLDISDN- 156 (667)
Q Consensus 80 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n-~~~~~-~~~~~~~l~~L~~L~L~~n- 156 (667)
+|++|.+++..+. .+..+++|++|+|++| .+++. ++..+..+++|++|++++|
T Consensus 124 ~L~~~~l~~~~~~------------------------~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 124 SLEGLRLSDPIVN------------------------TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp ECTTCBCCHHHHH------------------------HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred eCcCcccCHHHHH------------------------HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 7777666544444 4444555555555555 34432 3444555556666666665
Q ss_pred ccCCc-cCccCCCCC-CCCEEEccCC--cCC-CCcCccccCCCCcCeeeccCCc-ccccCCccccCCcccceeeccccc-
Q 042735 157 NFFGE-IASNWGKCP-KLSTLNVSMN--NIT-RSIPLEIGNLSTLNEFDLSLNH-IVGKIPKEFGKLNSLTKLILRGNQ- 229 (667)
Q Consensus 157 ~l~~~-~~~~~~~l~-~L~~L~L~~n--~l~-~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~- 229 (667)
.+.+. ++..+..++ +|++|++++| .++ +.+|..+.++++|+.|++++|. +++..+..+..+++|+.|++++|.
T Consensus 180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 55432 344455555 6666666666 333 2344555666677777777766 555555566677777777777774
Q ss_pred ccccCcccccCCCCCCeeeccCCcCCccchhhhhcc-cCCCeecCCCccCccccchhhhc
Q 042735 230 LIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNL-LKLHYLDLSKYQFIQELPKELGK 288 (667)
Q Consensus 230 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~ls~n~~~~~~p~~l~~ 288 (667)
+.......++.+++|+.|++++| ++. ..+..+ ..|..|++++|++.+..|..++.
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 21111124667778888888777 332 233333 23666777778877777766554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-23 Score=210.51 Aligned_cols=225 Identities=18% Similarity=0.154 Sum_probs=171.1
Q ss_pred cccCEEEcccccccccCCc---cccCCCCccEEEeeCcccccccCccC--CCCCCCcEEEccCCccccccc----hhhhc
Q 042735 74 LMLTVLALENNHFTGNLRH---NICRNGALERVIVGGNHFRGPIPKCL--RNCPNLVRISLEGNNMRGTIS----EAFGI 144 (667)
Q Consensus 74 ~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~l~~n~~~~~~p~~l--~~l~~L~~L~L~~n~~~~~~~----~~~~~ 144 (667)
..++.+.+.++.++...-. .+....+|+.|++++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3466666666665422111 12223568888888888888888877 888899999999998886544 44567
Q ss_pred CCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCC--c--CccccCCCCcCeeeccCCcccccCCc----cccC
Q 042735 145 YLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRS--I--PLEIGNLSTLNEFDLSLNHIVGKIPK----EFGK 216 (667)
Q Consensus 145 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~ 216 (667)
+++|++|+|++|.+.+..+..|..+++|++|+|++|++.+. + +..+.++++|++|+|++|.+.. ++. .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 88999999999999888888888999999999999987652 2 2234678899999999998863 222 2567
Q ss_pred CcccceeecccccccccCcccccCC---CCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCC
Q 042735 217 LNSLTKLILRGNQLIGHLPSEIGSL---TKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLS 293 (667)
Q Consensus 217 l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~ 293 (667)
+++|+.|+|++|++.+..|..+..+ ++|++|+|++|+++. +|..+. ++|+.|++++|++.+. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 8899999999999988778777776 699999999999984 566664 7899999999987653 44 57789999
Q ss_pred EEECcCCCCCC
Q 042735 294 ELELSHNFLGR 304 (667)
Q Consensus 294 ~L~l~~n~l~~ 304 (667)
.|++++|+++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999998854
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.4e-23 Score=209.68 Aligned_cols=223 Identities=22% Similarity=0.209 Sum_probs=176.1
Q ss_pred CCCeeecccccccee----CCCCCcccccCEEEcccccccccCCccc--cCCCCccEEEeeCcccccccC----ccCCCC
Q 042735 52 SLRYLFLFENNLSGS----IPPSVGNLMLTVLALENNHFTGNLRHNI--CRNGALERVIVGGNHFRGPIP----KCLRNC 121 (667)
Q Consensus 52 ~L~~L~L~~n~l~~~----~p~~~~~~~L~~L~L~~n~l~~~~~~~~--~~~~~L~~L~l~~n~~~~~~p----~~l~~l 121 (667)
.++.|.+.++.+... ++..+...+|+.|+|++|.+.+..|..+ ..+.+|+.|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 467777777665421 1122223458888888888888888777 778889999999998887555 345678
Q ss_pred CCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCc--c--CccCCCCCCCCEEEccCCcCCCCcCc----cccCC
Q 042735 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGE--I--ASNWGKCPKLSTLNVSMNNITRSIPL----EIGNL 193 (667)
Q Consensus 122 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l 193 (667)
++|++|+|++|.+++..+..|+.+++|++|+|++|++.+. + +..+..+++|++|+|++|.++. ++. .+.++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 9999999999999888888999999999999999987653 2 2234688999999999999963 332 25788
Q ss_pred CCcCeeeccCCcccccCCccccCC---cccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCe
Q 042735 194 STLNEFDLSLNHIVGKIPKEFGKL---NSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHY 270 (667)
Q Consensus 194 ~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 270 (667)
++|++|+|++|.+.+..|..+..+ ++|+.|+|++|+++ .+|..+. ++|+.|+|++|++++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 999999999999998878777776 69999999999998 6677664 7999999999999975 33 677899999
Q ss_pred ecCCCccCcc
Q 042735 271 LDLSKYQFIQ 280 (667)
Q Consensus 271 L~ls~n~~~~ 280 (667)
|++++|++..
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999998754
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.3e-22 Score=196.09 Aligned_cols=157 Identities=24% Similarity=0.280 Sum_probs=80.9
Q ss_pred CCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeecc
Q 042735 123 NLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLS 202 (667)
Q Consensus 123 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 202 (667)
+|+.|+|++|.+++..+..|..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 45555555555555444455555555555555555554444445555555555555555554444444555555555555
Q ss_pred CCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCc
Q 042735 203 LNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFI 279 (667)
Q Consensus 203 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~ 279 (667)
+|.+.+..+..|..+++|+.|+|++|.+.+..+..|+.+++|++|+|++|++++..+..+..+++|+.|++++|.+.
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 55555444444455555555555555555444444555555555555555555544444555555555555555443
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-24 Score=222.94 Aligned_cols=255 Identities=17% Similarity=0.109 Sum_probs=132.3
Q ss_pred EEEccCccccccCCccccCCCCCCeeeccccccceeCC----CCCcc-c-ccCEEEcccccccccCCccccCC-----CC
Q 042735 31 KLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIP----PSVGN-L-MLTVLALENNHFTGNLRHNICRN-----GA 99 (667)
Q Consensus 31 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~-~-~L~~L~L~~n~l~~~~~~~~~~~-----~~ 99 (667)
.++|++|.+++.+|..+...++|++|+|++|.+++..+ ..+.. . +|+.|+|++|.+++..+..+... .+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788999998888877777779999999999876544 33333 2 57777777777765554444442 55
Q ss_pred ccEEEeeCcccccccCcc----CCCC-CCCcEEEccCCccccccchhhhc-----CCCCCEEECcCCccCCccCccCCCC
Q 042735 100 LERVIVGGNHFRGPIPKC----LRNC-PNLVRISLEGNNMRGTISEAFGI-----YLNLTFLDISDNNFFGEIASNWGKC 169 (667)
Q Consensus 100 L~~L~l~~n~~~~~~p~~----l~~l-~~L~~L~L~~n~~~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~~~l 169 (667)
|+.|++++|.+++..+.. +..+ ++|++|+|++|.+++..+..+.. .++|++|+|++|.+....+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~----- 156 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD----- 156 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH-----
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH-----
Confidence 555555555555443332 2222 45555555555554443333221 13455555555444321111
Q ss_pred CCCCEEEccCCcCCCCcCccccCCC-CcCeeeccCCcccccCCccc----cCC-cccceeeccccccccc----Cccccc
Q 042735 170 PKLSTLNVSMNNITRSIPLEIGNLS-TLNEFDLSLNHIVGKIPKEF----GKL-NSLTKLILRGNQLIGH----LPSEIG 239 (667)
Q Consensus 170 ~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~----~~l-~~L~~L~L~~n~l~~~----~p~~~~ 239 (667)
.++..+..++ +|++|+|++|.+.+..+..+ ..+ ++|+.|+|++|.+.+. ++..+.
T Consensus 157 ---------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 157 ---------------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp ---------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred ---------------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 1112223333 45555555555544333222 222 3555555555555431 233333
Q ss_pred C-CCCCCeeeccCCcCCccchh----hhhcccCCCeecCCCccCcc-------ccchhhhcCCCCCEEECcCCCCCCc
Q 042735 240 S-LTKLEFLNLSTNRFSSLIPE----SLGNLLKLHYLDLSKYQFIQ-------ELPKELGKLVQLSELELSHNFLGRE 305 (667)
Q Consensus 240 ~-l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~ls~n~~~~-------~~p~~l~~l~~L~~L~l~~n~l~~~ 305 (667)
. .++|++|+|++|.+++..+. .+..+++|+.|++++|.+.. .++..+..+++|+.|++++|.+...
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3 23566666666655544332 22344556666666555221 2233445566677777777766544
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.9e-22 Score=194.34 Aligned_cols=205 Identities=20% Similarity=0.183 Sum_probs=165.7
Q ss_pred CcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccc-cceeCCCCCcc-cccCEEEccc-ccccccCC
Q 042735 15 LTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN-LSGSIPPSVGN-LMLTVLALEN-NHFTGNLR 91 (667)
Q Consensus 15 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~-~~L~~L~L~~-n~l~~~~~ 91 (667)
++. +|. + .++|++|+|++|++++..+..|.++++|++|++++|+ +++..+..+.. .+|+.|+|++ |.+++..+
T Consensus 23 l~~-ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQR-IPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSS-CCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccc-cCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 554 455 3 3488899999999987777788889999999999996 77665556665 5699999998 88887777
Q ss_pred ccccCCCCccEEEeeCcccccccCccCCCCCCCc---EEEccCC-ccccccchhhhcCCCCC-EEECcCCccCCccCccC
Q 042735 92 HNICRNGALERVIVGGNHFRGPIPKCLRNCPNLV---RISLEGN-NMRGTISEAFGIYLNLT-FLDISDNNFFGEIASNW 166 (667)
Q Consensus 92 ~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~---~L~L~~n-~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~ 166 (667)
..+..+++|+.|++++|.+++ +|. +..+++|+ .|++++| .+++..+..|..+++|+ .|++++|.+....+..|
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~ 176 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence 788888999999999999887 565 88888888 9999999 99888888899999999 99999999874334445
Q ss_pred CCCCCCCEEEccCCc-CCCCcCccccCC-CCcCeeeccCCcccccCCccccCCcccceeeccccc
Q 042735 167 GKCPKLSTLNVSMNN-ITRSIPLEIGNL-STLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQ 229 (667)
Q Consensus 167 ~~l~~L~~L~L~~n~-l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 229 (667)
.. ++|+.|++++|+ +++..+..|.++ ++|+.|++++|.+.+. |.. .+++|+.|+++++.
T Consensus 177 ~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 44 899999999995 887767788899 9999999999999854 433 67788899888764
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-22 Score=195.54 Aligned_cols=177 Identities=20% Similarity=0.253 Sum_probs=76.3
Q ss_pred CCCCCCCcEEEccCCc-cccccchhhhcCCCCCEEECcC-CccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCC
Q 042735 118 LRNCPNLVRISLEGNN-MRGTISEAFGIYLNLTFLDISD-NNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLST 195 (667)
Q Consensus 118 l~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 195 (667)
+.++++|+.|+|++|+ ++...+..|..+++|++|++++ |.+.+..+..|..+++|+.|++++|.+++ +|. +..+++
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~ 128 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYS 128 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCB
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccc
Confidence 3333444444444443 3333333344444444444443 44433333334444444444444444443 222 444444
Q ss_pred cC---eeeccCC-cccccCCccccCCcccc-eeecccccccccCcccccCCCCCCeeeccCCc-CCccchhhhhcc-cCC
Q 042735 196 LN---EFDLSLN-HIVGKIPKEFGKLNSLT-KLILRGNQLIGHLPSEIGSLTKLEFLNLSTNR-FSSLIPESLGNL-LKL 268 (667)
Q Consensus 196 L~---~L~L~~n-~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L 268 (667)
|+ +|++++| .+.+..+..|.++++|+ .|++++|.+....+..+.. ++|+.|++++|+ +++..+..|.++ ++|
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L 207 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence 44 4444444 44443334444455555 5555555444222222222 455555555552 444444444444 555
Q ss_pred CeecCCCccCccccchhhhcCCCCCEEECcCC
Q 042735 269 HYLDLSKYQFIQELPKELGKLVQLSELELSHN 300 (667)
Q Consensus 269 ~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n 300 (667)
+.|++++|++. .+|.. .+.+|+.|+++++
T Consensus 208 ~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 208 SLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp SEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred cEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 55555555443 23322 3445555555544
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-24 Score=240.65 Aligned_cols=303 Identities=15% Similarity=0.074 Sum_probs=167.8
Q ss_pred CCCCcEEeccCCcCcCCC----CccccCCCCCCEEEccCcccc----ccCCccccCCCCCCeeeccccccceeCCCCCcc
Q 042735 2 LTNLRELHLRDNYLTGLI----PTETWNLKSLVKLGLGGNQFR----GSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN 73 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 73 (667)
+++|+.|+|++|.+++.. +..+.++++|++|+|++|.++ +.++..+.++++|++|+|++|.+.+ +|..+..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence 467777777777765542 223345677777777777765 2334445566777777777776653 3333332
Q ss_pred -cccCEEEcccccc--------------------------cccCCccccCCCCccEEEeeCcccccccC-ccCCCCCCCc
Q 042735 74 -LMLTVLALENNHF--------------------------TGNLRHNICRNGALERVIVGGNHFRGPIP-KCLRNCPNLV 125 (667)
Q Consensus 74 -~~L~~L~L~~n~l--------------------------~~~~~~~~~~~~~L~~L~l~~n~~~~~~p-~~l~~l~~L~ 125 (667)
.+|+.|+++++.. .+.++..+..+++|+.|++++|.+++... ..+..+++|+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 2355555543211 12233334444556666666655443222 2245566666
Q ss_pred EEEccCCccccccchhhhcCCCCCEEECcC-----------CccCCc-cCccCCCCCCCCEEEccCCcCCCCcCccccC-
Q 042735 126 RISLEGNNMRGTISEAFGIYLNLTFLDISD-----------NNFFGE-IASNWGKCPKLSTLNVSMNNITRSIPLEIGN- 192 (667)
Q Consensus 126 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~- 192 (667)
.|+++++-..+.++..+..+++|++|++++ |.+.+. ++.....+++|+.|+++.|.+++..+..+..
T Consensus 322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence 666652222222333335566666666662 333322 1112234667777777666666544444444
Q ss_pred CCCcCeeecc----CCccccc-----CCccccCCcccceeeccccc--ccccCccccc-CCCCCCeeeccCCcCCcc-ch
Q 042735 193 LSTLNEFDLS----LNHIVGK-----IPKEFGKLNSLTKLILRGNQ--LIGHLPSEIG-SLTKLEFLNLSTNRFSSL-IP 259 (667)
Q Consensus 193 l~~L~~L~L~----~n~l~~~-----~p~~~~~l~~L~~L~L~~n~--l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~-~p 259 (667)
+++|+.|+++ .|.+++. ++..+.++++|+.|++++|. +++..+..++ .+++|++|+|++|.+++. ++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 6677777775 4455442 22224556777777776432 4433333333 367777888877777652 34
Q ss_pred hhhhcccCCCeecCCCccCccc-cchhhhcCCCCCEEECcCCCCCCc
Q 042735 260 ESLGNLLKLHYLDLSKYQFIQE-LPKELGKLVQLSELELSHNFLGRE 305 (667)
Q Consensus 260 ~~~~~l~~L~~L~ls~n~~~~~-~p~~l~~l~~L~~L~l~~n~l~~~ 305 (667)
..+.++++|+.|++++|.+... ++..+..+++|++|++++|.++..
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 4556677788888887776443 344445677788888887776543
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=191.21 Aligned_cols=180 Identities=23% Similarity=0.277 Sum_probs=162.9
Q ss_pred CCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeecc
Q 042735 123 NLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLS 202 (667)
Q Consensus 123 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 202 (667)
+.+.++++++.++. +|..+. ++++.|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 46778888888874 343332 689999999999999888899999999999999999999888889999999999999
Q ss_pred CCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCcccc
Q 042735 203 LNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQEL 282 (667)
Q Consensus 203 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~ 282 (667)
+|.+.+..+..|..+++|+.|+|++|.+.+..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.+..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 99999888888999999999999999999777777899999999999999999988888999999999999999998877
Q ss_pred chhhhcCCCCCEEECcCCCCCCc
Q 042735 283 PKELGKLVQLSELELSHNFLGRE 305 (667)
Q Consensus 283 p~~l~~l~~L~~L~l~~n~l~~~ 305 (667)
+..+..+++|+.|++++|++...
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 78899999999999999998654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-21 Score=195.89 Aligned_cols=205 Identities=20% Similarity=0.237 Sum_probs=156.7
Q ss_pred ccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcccccccc
Q 042735 10 LRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALENNHFTG 88 (667)
Q Consensus 10 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~ 88 (667)
+..+.+++.++ +.++++|++|++++|.+.. +| .+..+++|++|+|++|.+++..+ +.. .+|+.|+|++|.+++
T Consensus 26 l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 26 AGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp TTCSSTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC
T ss_pred hCCCCcCceec--HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC
Confidence 44444544322 3456777777777777763 34 56777777777777777764333 443 457777777777765
Q ss_pred cCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCC
Q 042735 89 NLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGK 168 (667)
Q Consensus 89 ~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 168 (667)
. ..+..+.+|+.|++++|.+++. + .+..+++|+.|+|++|.+++..+ +..+++|++|++++|.+.+..+ +..
T Consensus 100 ~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~ 171 (308)
T 1h6u_A 100 V--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LAN 171 (308)
T ss_dssp C--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred c--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcC
Confidence 3 3577778888888888888764 3 38899999999999999987654 8899999999999999876433 889
Q ss_pred CCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccc
Q 042735 169 CPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIG 232 (667)
Q Consensus 169 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 232 (667)
+++|+.|++++|.+++..+ +..+++|++|+|++|.+.+.. .+..+++|+.|++++|.+++
T Consensus 172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 9999999999999986544 888999999999999998654 38899999999999999874
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.4e-21 Score=198.18 Aligned_cols=238 Identities=16% Similarity=0.118 Sum_probs=144.3
Q ss_pred cEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCC-CCccc-cc-CEEEcc
Q 042735 6 RELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPP-SVGNL-ML-TVLALE 82 (667)
Q Consensus 6 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~~-~L-~~L~L~ 82 (667)
+.++.++++++. +|..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+|. .|..+ .+ +.+.+.
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 567888999986 56655 36899999999999976667899999999999999998766664 44443 33 345666
Q ss_pred cccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccC-CccccccchhhhcCC-CCCEEECcCCccCC
Q 042735 83 NNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEG-NNMRGTISEAFGIYL-NLTFLDISDNNFFG 160 (667)
Q Consensus 83 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~ 160 (667)
+|++....+..+..+++|+.|++++|++....+..+....++..|++.+ +++....+..|..+. .++.|++++|++..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6777766666666666777777777766655555555555666666644 445444444454443 45666666666643
Q ss_pred ccCccCCCCCCCCEEEccC-CcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCccccc
Q 042735 161 EIASNWGKCPKLSTLNVSM-NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIG 239 (667)
Q Consensus 161 ~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 239 (667)
++.......+|+.|++++ |.++...+..|.++++|++|+|++|+++...+..|.++++|+.+++. .+ ..+| .+.
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~--~l-~~lP-~l~ 243 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY--NL-KKLP-TLE 243 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCT--TC-CCCC-CTT
T ss_pred -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCC--Cc-CcCC-Cch
Confidence 333223344566666653 34433333345666666666666666654433344444444333321 12 2344 255
Q ss_pred CCCCCCeeeccC
Q 042735 240 SLTKLEFLNLST 251 (667)
Q Consensus 240 ~l~~L~~L~Ls~ 251 (667)
++++|+.+++++
T Consensus 244 ~l~~L~~l~l~~ 255 (350)
T 4ay9_X 244 KLVALMEASLTY 255 (350)
T ss_dssp TCCSCCEEECSC
T ss_pred hCcChhhCcCCC
Confidence 566666666554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=192.34 Aligned_cols=172 Identities=24% Similarity=0.325 Sum_probs=93.2
Q ss_pred CCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcC
Q 042735 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLN 197 (667)
Q Consensus 118 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 197 (667)
+..+++|+.|+|++|.+++..+ +..+++|++|++++|.+.+. +.+..+++|+.|++++|.+++. + .+.++++|+
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~ 132 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQ 132 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCC
T ss_pred hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCC
Confidence 4445555555555555554333 55555555555555555432 2455555555555555555542 2 255555666
Q ss_pred eeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCcc
Q 042735 198 EFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQ 277 (667)
Q Consensus 198 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~ 277 (667)
+|++++|.+.+..+ ++.+++|+.|++++|.+.+. +. +..+++|+.|++++|.+++..+ +..+++|+.|++++|+
T Consensus 133 ~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 133 VLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSC
T ss_pred EEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCc
Confidence 66666665554322 55556666666666655532 22 5556666666666666655432 5555666666666665
Q ss_pred CccccchhhhcCCCCCEEECcCCCCC
Q 042735 278 FIQELPKELGKLVQLSELELSHNFLG 303 (667)
Q Consensus 278 ~~~~~p~~l~~l~~L~~L~l~~n~l~ 303 (667)
+.+..+ +..+++|+.|++++|.+.
T Consensus 207 l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 207 ISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred cCcccc--ccCCCCCCEEEccCCeee
Confidence 543332 555666666666666653
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-23 Score=234.46 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=50.8
Q ss_pred CCCcCeeeccCCcccccCCccccC-Ccccceeecc----ccccccc-----CcccccCCCCCCeeeccCC--cCCccchh
Q 042735 193 LSTLNEFDLSLNHIVGKIPKEFGK-LNSLTKLILR----GNQLIGH-----LPSEIGSLTKLEFLNLSTN--RFSSLIPE 260 (667)
Q Consensus 193 l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~----~n~l~~~-----~p~~~~~l~~L~~L~Ls~N--~l~~~~p~ 260 (667)
+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+.++++|+.|++++| .+++..+.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 444444444444443333333322 4455555553 3333321 1122344555555555432 23333333
Q ss_pred hhhc-ccCCCeecCCCccCcc-ccchhhhcCCCCCEEECcCCCCC
Q 042735 261 SLGN-LLKLHYLDLSKYQFIQ-ELPKELGKLVQLSELELSHNFLG 303 (667)
Q Consensus 261 ~~~~-l~~L~~L~ls~n~~~~-~~p~~l~~l~~L~~L~l~~n~l~ 303 (667)
.+.. +++|+.|++++|++.+ .++..+..+++|+.|++++|.++
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 3332 5556666666665543 23444455666666666666653
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=195.98 Aligned_cols=239 Identities=21% Similarity=0.129 Sum_probs=121.4
Q ss_pred CEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcccccccccCCccccCCCCccEEEeeCc
Q 042735 30 VKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERVIVGGN 108 (667)
Q Consensus 30 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 108 (667)
++++-++++++ .+|..+ .++|++|+|++|+|+...+..|.. .+|++|+|++|.+.+.++.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~---------------- 72 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA---------------- 72 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT----------------
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh----------------
Confidence 45677777776 466655 356777777777776444444544 3466666666655443332
Q ss_pred ccccccCccCCCCCCCcE-EEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccC-CcCCCCc
Q 042735 109 HFRGPIPKCLRNCPNLVR-ISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM-NNITRSI 186 (667)
Q Consensus 109 ~~~~~~p~~l~~l~~L~~-L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~ 186 (667)
..|.++++|++ +.+..|+++...+..|..+++|++|++++|.+.+..+..+....++..|++.+ +.+....
T Consensus 73 -------~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 73 -------DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp -------TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred -------hHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc
Confidence 23344444433 33344445444444555555555555555555444444444444455555533 3343333
Q ss_pred CccccCCC-CcCeeeccCCcccccCCccccCCcccceeeccc-ccccccCcccccCCCCCCeeeccCCcCCccchhhhhc
Q 042735 187 PLEIGNLS-TLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRG-NQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGN 264 (667)
Q Consensus 187 p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 264 (667)
+..|..+. .++.|+|++|.+....+..| ...+|+.|++++ |.+....+..|+++++|++|+|++|+++...+..+.+
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~ 224 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT
T ss_pred ccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc
Confidence 33344443 35556666666554333222 344566666653 3443333334566666666666666666544433333
Q ss_pred ccCCCeecCCCccCccccchhhhcCCCCCEEECcC
Q 042735 265 LLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299 (667)
Q Consensus 265 l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~ 299 (667)
|+.|.+.++...+.+|. +..+++|+.+++.+
T Consensus 225 ---L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 225 ---LKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp ---CCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred ---chHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 33333333333455553 55666666666654
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-20 Score=178.07 Aligned_cols=162 Identities=22% Similarity=0.245 Sum_probs=95.4
Q ss_pred CCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeec
Q 042735 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDL 201 (667)
Q Consensus 122 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 201 (667)
++|++|+|++|++++..+..|..+++|++|++++|.+.+..+..|..+++|++|+|++|.+++..+..+.++++|++|+|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 45666666666666555555666666666666666665544445566666666666666666544444566666666666
Q ss_pred cCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccc
Q 042735 202 SLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQE 281 (667)
Q Consensus 202 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~ 281 (667)
++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+. +++|+.|+++.|++.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCce
Confidence 66666555444556666666666666666554444455666666666666655432 23455555555555555
Q ss_pred cchhhhcCC
Q 042735 282 LPKELGKLV 290 (667)
Q Consensus 282 ~p~~l~~l~ 290 (667)
+|.+++.++
T Consensus 181 ip~~~~~l~ 189 (208)
T 2o6s_A 181 VRNSAGSVA 189 (208)
T ss_dssp BBCTTSSBC
T ss_pred eeccCcccc
Confidence 555555443
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-20 Score=203.03 Aligned_cols=187 Identities=25% Similarity=0.331 Sum_probs=90.9
Q ss_pred CCCeeeccccccceeCCCCCcccccCEEEcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccC
Q 042735 52 SLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEG 131 (667)
Q Consensus 52 ~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~ 131 (667)
+|+.|+|++|++++ +|..+. .+|+.|+|++|.++ .+| ..+.+|+.|++++|++++ +|. +.+ +|+.|+|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~-~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP-PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC-TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhHc-CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 55555555555543 444332 33555555555554 233 223445555555555544 333 332 555555555
Q ss_pred CccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCC
Q 042735 132 NNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIP 211 (667)
Q Consensus 132 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 211 (667)
|++++ +|. .+++|+.|+|++|.+.+ +|. .+++|+.|+|++|.+++ +|. +. ++|+.|+|++|.++ .+|
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 55554 222 34555555555555543 333 34555555555555554 333 33 55555555555554 333
Q ss_pred ccccCCccc-------ceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcc
Q 042735 212 KEFGKLNSL-------TKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNL 265 (667)
Q Consensus 212 ~~~~~l~~L-------~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 265 (667)
. |.. +| +.|+|++|.++ .+|..+..+++|+.|+|++|.+++.+|..+..+
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 3 332 44 55555555554 345545555555555555555555555555443
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-20 Score=203.55 Aligned_cols=188 Identities=22% Similarity=0.296 Sum_probs=129.0
Q ss_pred CCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcccccccccCCccccCCCCccEEEeeC
Q 042735 28 SLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGG 107 (667)
Q Consensus 28 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 107 (667)
+|+.|+|++|.|++ +|..+ +++|++|+|++|+|+ .+|. ...+|+.|+|++|.+++ +|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip~--~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLPE--LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-cccc--ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 66666666666664 55444 256666666666665 4451 12346666666666665 444 433 677777777
Q ss_pred cccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcC
Q 042735 108 NHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIP 187 (667)
Q Consensus 108 n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 187 (667)
|++++ +|. .+++|+.|+|++|.+++ +|. .+++|++|+|++|.+.+ +|. |. ++|+.|+|++|.|+ .+|
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 77766 444 57788888888888876 333 56788888888888766 555 55 78888888888887 455
Q ss_pred ccccCCCCc-------CeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCC
Q 042735 188 LEIGNLSTL-------NEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLT 242 (667)
Q Consensus 188 ~~~~~l~~L-------~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 242 (667)
. +.. +| +.|+|++|.+. .+|..+..+++|+.|+|++|.+++.+|..++.+.
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 5 544 66 88999999887 4677777799999999999999888888776653
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=174.38 Aligned_cols=140 Identities=21% Similarity=0.299 Sum_probs=61.9
Q ss_pred CCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCe
Q 042735 119 RNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNE 198 (667)
Q Consensus 119 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 198 (667)
..+++|++|+|++|++++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+.++++|++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 128 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128 (208)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence 33344444444444444333333344444444444444444333333444444444444444444433333444444444
Q ss_pred eeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcc
Q 042735 199 FDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNL 265 (667)
Q Consensus 199 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 265 (667)
|+|++|.+.+..+..|..+++|+.|++++|.+.+ .+++|++|+++.|.++|.+|.+++.+
T Consensus 129 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred EECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 4444444444333334444455555555444332 23344555555555555555444443
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-21 Score=209.18 Aligned_cols=164 Identities=15% Similarity=0.181 Sum_probs=121.6
Q ss_pred CcceeecccCeEEEEEEeCCCceEEEEecCCCCCCch----HHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 425 AKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQ----IADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 425 ~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~----~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
..+.||+|+||.||+|.. .+..+++|+......... ....+.|.+|++++++++|||||++..++...+..++||
T Consensus 340 ~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVm 418 (540)
T 3en9_A 340 PEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMM 418 (540)
T ss_dssp --------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEE
T ss_pred CCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEE
Confidence 456899999999999954 466788887654332211 112456899999999999999996666666778889999
Q ss_pred EecCCCChHHHhccc----------------cCCcccccccCCeeecCCCceEEecccccccccCCCCC-------cccc
Q 042735 501 EYLKRGSLATNLSND----------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN-------WSAL 557 (667)
Q Consensus 501 ey~~~g~L~~~l~~~----------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~-------~~~~ 557 (667)
||+++|+|.+++... ....|.||||+|||++. .+||+|||+++........ ....
T Consensus 419 E~~~ggsL~~~l~~~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~ 496 (540)
T 3en9_A 419 SYINGKLAKDVIEDNLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAV 496 (540)
T ss_dssp ECCCSEEHHHHSTTCTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECC--eEEEEECccCEECCCccccccchhhhhhhh
Confidence 999999999887641 11235599999999998 9999999999986543211 1357
Q ss_pred cccccccCCC--------CCCCchHHHHHHHHHHHHhCCCCC
Q 042735 558 VGTYRYVAPD--------YRKKCDVYSFRVLALEVIKGKHPR 591 (667)
Q Consensus 558 ~Gt~~y~aPE--------~~~~~DV~sfGvvl~ElltG~~p~ 591 (667)
+||+.||||| |..++|+||..+-.+|.+.++.+|
T Consensus 497 ~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY 538 (540)
T 3en9_A 497 LSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY 538 (540)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred cCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 8999999999 566789999999999988887664
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-21 Score=217.10 Aligned_cols=299 Identities=15% Similarity=0.134 Sum_probs=144.3
Q ss_pred CCCCcEEeccCCcCcCCCCcccc-CCCCCCEEEccCc-ccccc-CCccccCCCCCCeeeccccccceeCCCCCc----c-
Q 042735 2 LTNLRELHLRDNYLTGLIPTETW-NLKSLVKLGLGGN-QFRGS-LPSSVGNLSSLRYLFLFENNLSGSIPPSVG----N- 73 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~- 73 (667)
+++|+.|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 35667777777766654444443 4667777777776 44422 333344667777777777766543332222 1
Q ss_pred cccCEEEccccc--cccc-CCccccCCCCccEEEeeCc-ccccccCccCCCCCCCcEEEccCCc----------------
Q 042735 74 LMLTVLALENNH--FTGN-LRHNICRNGALERVIVGGN-HFRGPIPKCLRNCPNLVRISLEGNN---------------- 133 (667)
Q Consensus 74 ~~L~~L~L~~n~--l~~~-~~~~~~~~~~L~~L~l~~n-~~~~~~p~~l~~l~~L~~L~L~~n~---------------- 133 (667)
.+|+.|+|++|. +... +...+..+++|+.|++++| .+.+ +|..+..+++|+.|++..+.
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 357777777665 2111 1111233466777776665 2222 44444445555555433221
Q ss_pred ----------cc----cccchhhhcCCCCCEEECcCCccCCcc-CccCCCCCCCCEEEccCCcCCC-CcCccccCCCCcC
Q 042735 134 ----------MR----GTISEAFGIYLNLTFLDISDNNFFGEI-ASNWGKCPKLSTLNVSMNNITR-SIPLEIGNLSTLN 197 (667)
Q Consensus 134 ----------~~----~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~ 197 (667)
+. +.++..+..+++|+.|++++|.+.+.. ...+..+++|+.|++++| +.. .++.....+++|+
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 00 112233335677777777777754332 222456677777777766 221 1122222456666
Q ss_pred eeeccC---------CcccccCCccc-cCCcccceeecccccccccCccccc-CCCCCCeeecc--C----CcCCcc---
Q 042735 198 EFDLSL---------NHIVGKIPKEF-GKLNSLTKLILRGNQLIGHLPSEIG-SLTKLEFLNLS--T----NRFSSL--- 257 (667)
Q Consensus 198 ~L~L~~---------n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~--- 257 (667)
+|+++. +.+++.....+ .++++|+.|.++.|.+++..+..+. .+++|+.|+++ + |.++..
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence 666622 22322111111 1245555555555555443333332 35555555555 2 333311
Q ss_pred --chhhhhcccCCCeecCCCccCccccchhhhc-CCCCCEEECcCCCCC
Q 042735 258 --IPESLGNLLKLHYLDLSKYQFIQELPKELGK-LVQLSELELSHNFLG 303 (667)
Q Consensus 258 --~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~-l~~L~~L~l~~n~l~ 303 (667)
++..+..+++|+.|++++ ++....+..++. +++|++|++++|.++
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~ 469 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDS 469 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSS
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCc
Confidence 112234445555555544 333333333333 455555555555543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-20 Score=212.47 Aligned_cols=299 Identities=16% Similarity=0.106 Sum_probs=137.9
Q ss_pred CCCCcEEeccCC-cCcCC-CCccccCCCCCCEEEccCccccccCCcccc----CCCCCCeeeccccc--cce-eCCCCCc
Q 042735 2 LTNLRELHLRDN-YLTGL-IPTETWNLKSLVKLGLGGNQFRGSLPSSVG----NLSSLRYLFLFENN--LSG-SIPPSVG 72 (667)
Q Consensus 2 L~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l~~L~~L~L~~n~--l~~-~~p~~~~ 72 (667)
+++|+.|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .+++|+.|++++|. +.. .++....
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 567888888877 44432 233344678888888888877654444433 55678888888775 211 0111111
Q ss_pred -ccccCEEEcccccccccCCccccCCCCccEEEeeCcc--------------------------c----ccccCccCCCC
Q 042735 73 -NLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNH--------------------------F----RGPIPKCLRNC 121 (667)
Q Consensus 73 -~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~--------------------------~----~~~~p~~l~~l 121 (667)
..+|+.|+|++|.....++..+..+++|+.|+++.+. + .+.++..+..+
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 1457777777763222244444444455555433221 0 01122222345
Q ss_pred CCCcEEEccCCcccccc-chhhhcCCCCCEEECcCCccCCc-cCccCCCCCCCCEEEccC---------CcCCCCcCccc
Q 042735 122 PNLVRISLEGNNMRGTI-SEAFGIYLNLTFLDISDNNFFGE-IASNWGKCPKLSTLNVSM---------NNITRSIPLEI 190 (667)
Q Consensus 122 ~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~~p~~~ 190 (667)
++|++|+|++|.+++.. ...+..+++|+.|++++| +... ++.....+++|+.|++.+ +.++......+
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 66666666666654322 122345566666666655 2211 111112355566665522 22221111111
Q ss_pred -cCCCCcCeeeccCCcccccCCcccc-CCcccceeecc--c----cccccc-----CcccccCCCCCCeeeccCCcCCcc
Q 042735 191 -GNLSTLNEFDLSLNHIVGKIPKEFG-KLNSLTKLILR--G----NQLIGH-----LPSEIGSLTKLEFLNLSTNRFSSL 257 (667)
Q Consensus 191 -~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~--~----n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~ 257 (667)
.++++|+.|+++.|.+++..+..+. .+++|+.|+++ + |.++.. ++..+..+++|+.|+|++ .+++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 1245555555554444433222222 34555555555 2 222211 011133444555555543 33333
Q ss_pred chhhhhc-ccCCCeecCCCccCccccchhh-hcCCCCCEEECcCCCC
Q 042735 258 IPESLGN-LLKLHYLDLSKYQFIQELPKEL-GKLVQLSELELSHNFL 302 (667)
Q Consensus 258 ~p~~~~~-l~~L~~L~ls~n~~~~~~p~~l-~~l~~L~~L~l~~n~l 302 (667)
.+..+.. +++|+.|++++|.+.+..+..+ ..+++|++|++++|.+
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 2333332 4445555555544433333222 3344555555555544
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=175.73 Aligned_cols=169 Identities=25% Similarity=0.308 Sum_probs=85.1
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeee
Q 042735 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFD 200 (667)
Q Consensus 121 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 200 (667)
+++|+.|++++|.++.. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++ +| .+.++++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 44455555555544432 124445555555555555543322 4455555555555555543 22 255555555555
Q ss_pred ccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCcc
Q 042735 201 LSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQ 280 (667)
Q Consensus 201 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~ 280 (667)
+++|.+.+. +.+..+++|+.|++++|.+.+. ..++.+++|+.|++++|.+++..| +..+++|+.|++++|++.+
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 555555432 3355555555555555555432 345555555555555555555433 5555555555555555433
Q ss_pred ccchhhhcCCCCCEEECcCCCCC
Q 042735 281 ELPKELGKLVQLSELELSHNFLG 303 (667)
Q Consensus 281 ~~p~~l~~l~~L~~L~l~~n~l~ 303 (667)
+| .+..+++|+.|++++|.+.
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEE
T ss_pred -Ch-hhccCCCCCEEECcCCccc
Confidence 33 2555556666666655553
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9.5e-19 Score=194.91 Aligned_cols=129 Identities=22% Similarity=0.317 Sum_probs=72.1
Q ss_pred ccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCC
Q 042735 94 ICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLS 173 (667)
Q Consensus 94 ~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 173 (667)
+..+.+|+.|++++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+. ..+..+++|+
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 156 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 156 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCS
T ss_pred hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCC
Confidence 33444445555555544431 2456666666666666666542 3455666666666666666543 4455566666
Q ss_pred EEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccc
Q 042735 174 TLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIG 232 (667)
Q Consensus 174 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 232 (667)
.|+|++|.+.+..| +..+++|+.|+|++|.+.+. +.+..+++|+.|+|++|.+.+
T Consensus 157 ~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 157 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred EEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 66666666655444 55566666666666655542 245555666666666665554
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-18 Score=192.33 Aligned_cols=189 Identities=24% Similarity=0.341 Sum_probs=131.0
Q ss_pred cCEEEcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcC
Q 042735 76 LTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISD 155 (667)
Q Consensus 76 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 155 (667)
+..+.+..+.+....+ +..+.+|+.|++++|.+... | .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4445566666554332 34566777777877777643 3 47777888888888888776544 77777888888888
Q ss_pred CccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCc
Q 042735 156 NNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLP 235 (667)
Q Consensus 156 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 235 (667)
|.+.+ + +.+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..|
T Consensus 97 N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 87754 2 3577777778888877777653 3477777777777777777654 567777777777777777765544
Q ss_pred ccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCcc
Q 042735 236 SEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQ 280 (667)
Q Consensus 236 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~ 280 (667)
+..+++|+.|+|++|.+++. | .+..+++|+.|+|++|++.+
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEEC
T ss_pred --hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcC
Confidence 67777777777777777764 3 46677777777777777654
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=182.08 Aligned_cols=156 Identities=26% Similarity=0.233 Sum_probs=86.3
Q ss_pred CCcEEEccCCccccccchhhh-cCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeec
Q 042735 123 NLVRISLEGNNMRGTISEAFG-IYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDL 201 (667)
Q Consensus 123 ~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 201 (667)
.++.|+|++|++++..+..|. .+++|++|+|++|++.+..+..|..+++|+.|+|++|+++...+..|.++++|++|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 355555555555555555554 5555555555555555544555555556666666666555544445555666666666
Q ss_pred cCCcccccCCccccCCcccceeecccccccccCcccc---cCCCCCCeeeccCCcCCccchhhhhcccC--CCeecCCCc
Q 042735 202 SLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEI---GSLTKLEFLNLSTNRFSSLIPESLGNLLK--LHYLDLSKY 276 (667)
Q Consensus 202 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~ls~n 276 (667)
++|.+.+..|..|.++++|+.|+|++|.+.+..+..| ..+++|+.|+|++|++++..+..+..++. |+.|++++|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 6666555555556666666666666666554333333 34566666666666666554455555544 245555555
Q ss_pred cC
Q 042735 277 QF 278 (667)
Q Consensus 277 ~~ 278 (667)
.+
T Consensus 200 ~~ 201 (361)
T 2xot_A 200 PL 201 (361)
T ss_dssp CE
T ss_pred Cc
Confidence 43
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=182.03 Aligned_cols=176 Identities=25% Similarity=0.234 Sum_probs=154.0
Q ss_pred cEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCC-CCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccC
Q 042735 125 VRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWG-KCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSL 203 (667)
Q Consensus 125 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 203 (667)
+.+++++++++. +|..+ ...++.|+|++|.+.+..+..+. .+++|+.|+|++|++++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 678889998875 44333 35689999999999888888887 999999999999999988888899999999999999
Q ss_pred CcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhh---hcccCCCeecCCCccCcc
Q 042735 204 NHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESL---GNLLKLHYLDLSKYQFIQ 280 (667)
Q Consensus 204 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~ls~n~~~~ 280 (667)
|.+.+..+..|.++++|+.|+|++|.+.+..|..|.++++|+.|+|++|++++..+..+ ..+++|+.|+|++|++..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99998888889999999999999999998889999999999999999999998766666 578999999999999876
Q ss_pred ccchhhhcCCC--CCEEECcCCCCC
Q 042735 281 ELPKELGKLVQ--LSELELSHNFLG 303 (667)
Q Consensus 281 ~~p~~l~~l~~--L~~L~l~~n~l~ 303 (667)
..+..+..++. |+.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 66678888887 489999999874
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-18 Score=166.24 Aligned_cols=153 Identities=20% Similarity=0.217 Sum_probs=106.1
Q ss_pred EEEeeCcccccccCccCCCCCCCcEEEccCCccccccc-hhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCC
Q 042735 102 RVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTIS-EAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180 (667)
Q Consensus 102 ~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 180 (667)
.+++++|.++. +|..+. +.++.|+|++|++++..+ ..|..+++|++|+|++|.+.+..+..|..+++|+.|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45555555543 344332 345677777777776643 45677777777777777777666667777777777777777
Q ss_pred cCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCcc
Q 042735 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL 257 (667)
Q Consensus 181 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 257 (667)
.+++..+..|.++++|++|+|++|.+.+..|..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+...
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 77766666677777777777777777776677777777777777777777766677777777777777777777654
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-18 Score=166.26 Aligned_cols=134 Identities=24% Similarity=0.253 Sum_probs=83.8
Q ss_pred CCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeec
Q 042735 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDL 201 (667)
Q Consensus 122 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 201 (667)
++|+.|+|++|++++..+..|..+++|++|+|++|.+.+..|..|.++++|++|+|++|.++...+..|.++++|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45666666666666655556666666666666666666555666666666666666666666544444566666666666
Q ss_pred cCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCC
Q 042735 202 SLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFS 255 (667)
Q Consensus 202 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 255 (667)
++|.+.+..|..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|.+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 666666555556666666666666666666555555666666666666666554
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-18 Score=165.98 Aligned_cols=132 Identities=24% Similarity=0.338 Sum_probs=63.3
Q ss_pred CCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeecc
Q 042735 171 KLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLS 250 (667)
Q Consensus 171 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 250 (667)
+|+.|+|++|.+++..+..|.++++|+.|+|++|.+.+..|..|.++++|+.|+|++|.++...+..|.++++|++|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 34444444444444333344444444444444444444444444444444444444444443333334445555555555
Q ss_pred CCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCC
Q 042735 251 TNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFL 302 (667)
Q Consensus 251 ~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l 302 (667)
+|.+++..|..|..+++|+.|+|++|++.+..+..+..+++|++|++++|++
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 5555544444455555555555555554444444455555555555555544
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-18 Score=166.16 Aligned_cols=132 Identities=23% Similarity=0.242 Sum_probs=73.5
Q ss_pred CCEEEccCCcCCCCcC-ccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeecc
Q 042735 172 LSTLNVSMNNITRSIP-LEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLS 250 (667)
Q Consensus 172 L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 250 (667)
++.|+|++|.+++..+ ..|.++++|++|+|++|.+.+..+..|.++++|+.|+|++|.+++..+..|.++++|++|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 3455555555544322 234555555555555555555444455555555555555555555555555555555666666
Q ss_pred CCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCC
Q 042735 251 TNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLG 303 (667)
Q Consensus 251 ~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 303 (667)
+|++++..|..|.++++|+.|++++|++.+..|..|..+++|++|++++|++.
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55555555555555555666666655555555555556666666666666553
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-21 Score=211.32 Aligned_cols=217 Identities=16% Similarity=0.090 Sum_probs=139.8
Q ss_pred cCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcccccccccCCccccCCCCccEE
Q 042735 24 WNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERV 103 (667)
Q Consensus 24 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 103 (667)
..+++|+.|+|++|++. .+|.+++++++|+.|++++|.....+|.. +..+.+.+..|..+..+.+|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l----------l~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL----------MRALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH----------HHHHCTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH----------HHhcccccCCHHHHHHHHhcccC
Confidence 46778888888888886 67888888888888888666421111110 01112223344444444445444
Q ss_pred E-eeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcC
Q 042735 104 I-VGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNI 182 (667)
Q Consensus 104 ~-l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 182 (667)
+ +..|.+ .+|+.+.+.+|.++...+ ..|+.|+|++|.+.+ +|. ++.+++|+.|+|++|.+
T Consensus 415 ~~l~~n~~-----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l 475 (567)
T 1dce_A 415 DPMRAAYL-----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRL 475 (567)
T ss_dssp CGGGHHHH-----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCC
T ss_pred cchhhccc-----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccc
Confidence 4 333322 123334444455443221 247777777777765 454 77777888888888877
Q ss_pred CCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccC-cccccCCCCCCeeeccCCcCCccchh-
Q 042735 183 TRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHL-PSEIGSLTKLEFLNLSTNRFSSLIPE- 260 (667)
Q Consensus 183 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~- 260 (667)
+ .+|..++++++|+.|+|++|.+++ +| .|+.+++|+.|+|++|.+++.. |..++.+++|+.|+|++|.+++.+|.
T Consensus 476 ~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 476 R-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp C-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred c-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 7 567777888888888888888776 45 6778888888888888887665 77788888888888888888776442
Q ss_pred --hhhcccCCCeecC
Q 042735 261 --SLGNLLKLHYLDL 273 (667)
Q Consensus 261 --~~~~l~~L~~L~l 273 (667)
.+..+++|+.|++
T Consensus 553 ~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 553 ERLAEMLPSVSSILT 567 (567)
T ss_dssp THHHHHCTTCSEEEC
T ss_pred HHHHHHCcccCccCC
Confidence 2334677777753
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.3e-21 Score=212.55 Aligned_cols=202 Identities=18% Similarity=0.105 Sum_probs=135.6
Q ss_pred CCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCcc-------------ccccCCccccCCCCCCeee-ccccccceeC
Q 042735 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQ-------------FRGSLPSSVGNLSSLRYLF-LFENNLSGSI 67 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n~l~~~~ 67 (667)
.++|+.|+|++|.++. +|..+.++++|+.|++++|. +.+..|..++++++|+.|+ ++.|.+.
T Consensus 348 ~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--- 423 (567)
T 1dce_A 348 DEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--- 423 (567)
T ss_dssp TTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH---
T ss_pred CccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc---
Confidence 5789999999999985 69999999999999998886 4556677777777787777 6666543
Q ss_pred CCCCcccccCEEEcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCC
Q 042735 68 PPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLN 147 (667)
Q Consensus 68 p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 147 (667)
.|..+.+++|.++.. .+ ..|+.|+|++|.+++ +|. ++.+++
T Consensus 424 -------~L~~l~l~~n~i~~l------------------------~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~ 464 (567)
T 1dce_A 424 -------DLRSKFLLENSVLKM------------------------EY------ADVRVLHLAHKDLTV-LCH-LEQLLL 464 (567)
T ss_dssp -------HHHHHHHHHHHHHHH------------------------HH------TTCSEEECTTSCCSS-CCC-GGGGTT
T ss_pred -------hhhhhhhhccccccc------------------------Cc------cCceEEEecCCCCCC-CcC-cccccc
Confidence 233344444444321 11 135666666666665 333 666666
Q ss_pred CCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccC-CccccCCcccceeecc
Q 042735 148 LTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKI-PKEFGKLNSLTKLILR 226 (667)
Q Consensus 148 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~ 226 (667)
|+.|+|++|.+. .+|..++.+++|+.|+|++|.+++ +| .++++++|+.|+|++|.+.+.. |..|+.+++|+.|+|+
T Consensus 465 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 666666666665 556666667777777777777765 44 5677777777777777776665 6677777777777777
Q ss_pred cccccccCcc---cccCCCCCCeeec
Q 042735 227 GNQLIGHLPS---EIGSLTKLEFLNL 249 (667)
Q Consensus 227 ~n~l~~~~p~---~~~~l~~L~~L~L 249 (667)
+|.+++.+|. .+..+++|+.|++
T Consensus 542 ~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 542 GNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcCCCCccHHHHHHHHCcccCccCC
Confidence 7777655442 1334677777754
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=174.92 Aligned_cols=185 Identities=20% Similarity=0.263 Sum_probs=139.4
Q ss_pred eccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEccccccc
Q 042735 9 HLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALENNHFT 87 (667)
Q Consensus 9 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~ 87 (667)
.+..+.+++..+ +..+++|+.|++++|.+... + .+..+++|++|+|++|++++..+ +.. .+|+.|+|++|.++
T Consensus 30 ~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 30 NLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred HhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence 444555554322 24567777777777777643 3 36777777777777777765433 433 45777777777776
Q ss_pred ccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCC
Q 042735 88 GNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWG 167 (667)
Q Consensus 88 ~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 167 (667)
+. ..+..+.+|+.|++++|++++. ..+..+++|+.|+|++|++++. ..+..+++|+.|++++|.+.+..+ +.
T Consensus 104 ~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~ 175 (291)
T 1h6t_A 104 DL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA 175 (291)
T ss_dssp CG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hc
Confidence 52 2377778888888888888764 4688899999999999999865 578899999999999999977554 88
Q ss_pred CCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCccccc
Q 042735 168 KCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGK 209 (667)
Q Consensus 168 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 209 (667)
.+++|+.|++++|.+++. + .+.++++|+.|++++|.+...
T Consensus 176 ~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp TCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred CCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 999999999999999864 4 488999999999999988753
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=162.24 Aligned_cols=134 Identities=22% Similarity=0.265 Sum_probs=72.3
Q ss_pred CCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeec
Q 042735 122 PNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDL 201 (667)
Q Consensus 122 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 201 (667)
++|+.|+|++|.+++..+..|..+++|++|+|++|.+.+..+..|..+++|+.|+|++|.+++..+..|..+++|++|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 55556666666555555555555555555555555554443444555555555555555555444444555555555555
Q ss_pred cCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCc
Q 042735 202 SLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSS 256 (667)
Q Consensus 202 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 256 (667)
++|.+. .+|..+..+++|+.|+|++|++.+..+..+..+++|+.|+|++|.+..
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 555554 344455555555555555555554444445555555555555555543
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=161.40 Aligned_cols=150 Identities=21% Similarity=0.226 Sum_probs=77.8
Q ss_pred cEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCC
Q 042735 125 VRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLN 204 (667)
Q Consensus 125 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 204 (667)
+.++.+++.++.. |..+ .++|++|+|++|.+.+..|..|..+++|+.|+|++|.+....+..|.++++|++|+|++|
T Consensus 22 ~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4566666665432 2221 255556666666555555555555555555555555555444444455555555555555
Q ss_pred cccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccC
Q 042735 205 HIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQF 278 (667)
Q Consensus 205 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~ 278 (667)
.+.+..+..|..+++|+.|+|++|++. .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 555444444555555555555555554 3444455555555555555555544444444444444444444443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-18 Score=198.78 Aligned_cols=141 Identities=25% Similarity=0.270 Sum_probs=68.2
Q ss_pred CccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCC
Q 042735 115 PKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLS 194 (667)
Q Consensus 115 p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 194 (667)
|..+..+++|+.|+|++|.+. .++..+..+++|++|+|++|.+. .+|..|..+++|+.|+|++|.|+ .+|..|++|+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 444555555555555555554 33333445555555555555554 44555555555555555555554 3454555555
Q ss_pred CcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCC-CCCeeeccCCcCCccch
Q 042735 195 TLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLT-KLEFLNLSTNRFSSLIP 259 (667)
Q Consensus 195 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p 259 (667)
+|++|+|++|.+. .+|..|+.|++|+.|+|++|.+++.+|..+..+. .+..|+|++|.+++.+|
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 5555555555543 3444455555555555555555544444443321 11224455555555444
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=157.92 Aligned_cols=150 Identities=19% Similarity=0.234 Sum_probs=80.5
Q ss_pred CCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeec
Q 042735 146 LNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLIL 225 (667)
Q Consensus 146 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 225 (667)
++|+.|++++|.+. .+| .+..+++|++|++++|.+.. +..+..+++|++|++++|.+.+..+..|+.+++|+.|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 34444444444443 222 34444455555555553321 224555555555555555555545555556666666666
Q ss_pred ccccccccCcccccCCCCCCeeeccCCc-CCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCCC
Q 042735 226 RGNQLIGHLPSEIGSLTKLEFLNLSTNR-FSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLG 303 (667)
Q Consensus 226 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 303 (667)
++|.+.+..|..++.+++|++|++++|. ++. +| .+..+++|+.|++++|++.+ ++ .+..+++|++|++++|.++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 6666655555556666666666666665 433 33 45566666666666666543 33 4566677777777777664
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=157.97 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=73.7
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeee
Q 042735 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFD 200 (667)
Q Consensus 121 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 200 (667)
+++|+.|++++|.++. ++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 3444444444444442 22 3444445555555554332 122444455555555555555444444455555555555
Q ss_pred ccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccC
Q 042735 201 LSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQF 278 (667)
Q Consensus 201 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~ 278 (667)
+++|.+.+..|..++.+++|+.|++++|.+.+.+| .+..+++|+.|++++|.+++. + .+..+++|+.|++++|++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 55555554444455555555555555554222333 455555555555555555542 2 455555555555555553
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-18 Score=170.88 Aligned_cols=166 Identities=22% Similarity=0.294 Sum_probs=90.0
Q ss_pred CcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEccc
Q 042735 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALEN 83 (667)
Q Consensus 5 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~ 83 (667)
+..++++.|.++++. .+..+++|++|++++|+++. +| .+..+++|++|+|++|++++..| +.. .+|+.|+|++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 344556666665432 34556666666666666653 33 46666666666666666654322 333 3455555555
Q ss_pred ccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccC
Q 042735 84 NHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIA 163 (667)
Q Consensus 84 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 163 (667)
|.+++. |. +.. ++|+.|+|++|++++. ..+..+++|+.|++++|++.+. +
T Consensus 95 N~l~~l-------------------------~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~ 144 (263)
T 1xeu_A 95 NRLKNL-------------------------NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V 144 (263)
T ss_dssp SCCSCC-------------------------TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G
T ss_pred CccCCc-------------------------Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h
Confidence 555432 11 111 5555555555555542 2355555666666666655443 2
Q ss_pred ccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCccccc
Q 042735 164 SNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGK 209 (667)
Q Consensus 164 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 209 (667)
.+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 145 -~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 145 -MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 455556666666666666544 3455666666666666665543
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-18 Score=195.85 Aligned_cols=196 Identities=20% Similarity=0.218 Sum_probs=104.8
Q ss_pred CCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcccccccccCCccccCCCCccEEEee
Q 042735 27 KSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVG 106 (667)
Q Consensus 27 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 106 (667)
+.++.|+|.+|.+.. .+..+ |+.++|+.|.|.+ +++..|.+. ..+..+..+..|+.|+++
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~-----l~~l~Ls~~~i~~-------------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls 232 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQAL-----LQHKKLSQYSIDE-------------DDDIENRMV-MPKDSKYDDQLWHALDLS 232 (727)
T ss_dssp ---------------------------------------------------------------------CCCCCCEEECT
T ss_pred CccceEEeeCCCCCc-chhhH-----hhcCccCcccccC-------------cccccccee-cChhhhccCCCCcEEECC
Confidence 446666776666653 23222 3444444444332 233334433 345556666777777777
Q ss_pred CcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCc
Q 042735 107 GNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSI 186 (667)
Q Consensus 107 ~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 186 (667)
+|.+. .+|..+.++++|+.|+|++|.++ .+|..|+.+++|++|+|++|.+. .+|..|..+++|++|+|++|.++ .+
T Consensus 233 ~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~l 308 (727)
T 4b8c_D 233 NLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL 308 (727)
T ss_dssp TSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CC
T ss_pred CCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-cc
Confidence 77776 56666667888888888888887 66777888888888888888876 66888888888888888888886 56
Q ss_pred CccccCCCCcCeeeccCCcccccCCccccCCcc-cceeecccccccccCcccccCCCCCCeeeccCC
Q 042735 187 PLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNS-LTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTN 252 (667)
Q Consensus 187 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 252 (667)
|..|++|++|+.|+|++|.+.+.+|..+..+.. +..|+|++|.+++.+|.. |+.|+++.|
T Consensus 309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 767888888888888888888777776654422 234678888888777654 445556555
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-17 Score=165.12 Aligned_cols=169 Identities=22% Similarity=0.297 Sum_probs=107.7
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeee
Q 042735 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFD 200 (667)
Q Consensus 121 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 200 (667)
+.++..+++..|.+++.. .+..+++|++|++++|.+.. ++ .+..+++|+.|+|++|.+++..+ +.++++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 444555566666665433 45566666666666666643 33 45666677777777776665443 66677777777
Q ss_pred ccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCcc
Q 042735 201 LSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQ 280 (667)
Q Consensus 201 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~ 280 (667)
|++|.+.+. |. +.. ++|+.|++++|.+++ + ..++.+++|+.|+|++|++++. + .+..+++|+.|++++|++.+
T Consensus 92 L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCc-Cc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 777766542 32 222 677777777777664 2 2466777777777777777664 3 56667777777777777655
Q ss_pred ccchhhhcCCCCCEEECcCCCCCC
Q 042735 281 ELPKELGKLVQLSELELSHNFLGR 304 (667)
Q Consensus 281 ~~p~~l~~l~~L~~L~l~~n~l~~ 304 (667)
. ..+..+++|+.|++++|.+..
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEEC
T ss_pred h--HHhccCCCCCEEeCCCCcccC
Confidence 4 556677777777777777644
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-16 Score=161.38 Aligned_cols=259 Identities=13% Similarity=0.081 Sum_probs=131.3
Q ss_pred CCCCcEEeccCCcCc--CCCCccccCCCCCCEEEccCccccccCCccccC--------CCCCCeeeccccccceeCCCCC
Q 042735 2 LTNLRELHLRDNYLT--GLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGN--------LSSLRYLFLFENNLSGSIPPSV 71 (667)
Q Consensus 2 L~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~--------l~~L~~L~L~~n~l~~~~p~~~ 71 (667)
+++|+.|||++|+|. ...+.. ++.+..+.+..|.| .+.+|.+ +++|+.|+|.+ .++...+..|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCcccc---cccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 678999999999998 221111 12233344444422 2233444 55555555555 4544333444
Q ss_pred cc-cccCEEEcccccccccCCccccCCCCccEEEeeCccc----ccccCccCCCCCCCc-EEEccCCccccccchh-h--
Q 042735 72 GN-LMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHF----RGPIPKCLRNCPNLV-RISLEGNNMRGTISEA-F-- 142 (667)
Q Consensus 72 ~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~----~~~~p~~l~~l~~L~-~L~L~~n~~~~~~~~~-~-- 142 (667)
.. .+|+.++|++|.+....+..|....++..+.+..+.. ...-..++.++.+|+ .+.+.... .++.. +
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~ 197 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKA 197 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHT
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhc
Confidence 44 3455555555555544444454444444443332111 111123344455555 33333221 11111 1
Q ss_pred -hcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccc
Q 042735 143 -GIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLT 221 (667)
Q Consensus 143 -~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 221 (667)
....++..+.+.++-...........+++|+.|+|++|+++...+..|.++++|+.++|..| +..+.+..|.++.+|+
T Consensus 198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence 12334445544433111000000112556666666666666555556666666666666665 5444555666666666
Q ss_pred -eeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeec
Q 042735 222 -KLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLD 272 (667)
Q Consensus 222 -~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 272 (667)
.+++.+ .+....+.+|.++++|+.+++++|.++.+.+.+|.++++|+.++
T Consensus 277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 277 GTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 666666 45544556666777777777766777666666676766766664
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.3e-17 Score=166.66 Aligned_cols=259 Identities=15% Similarity=0.136 Sum_probs=158.9
Q ss_pred CCCCCEEEccCccccccCCccccC-CCCCCeeeccccccc--eeCCCCCcccccCEEEcccccccccCCccccC------
Q 042735 26 LKSLVKLGLGGNQFRGSLPSSVGN-LSSLRYLFLFENNLS--GSIPPSVGNLMLTVLALENNHFTGNLRHNICR------ 96 (667)
Q Consensus 26 l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~--~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~------ 96 (667)
+.+|+.|.++++- ....-..+.. +++|+.|||++|++. ...+..+.. +..+.+..|.+. ...|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~--~~~~~~~~~~I~---~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPN--GKFYIYMANFVP---AYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGG--GCCEEECTTEEC---TTTTEEEETTEE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccccccc--cccccccccccC---HHHhcccccccc
Confidence 5678899998763 2222233444 788999999999987 333333322 344555555332 234444
Q ss_pred --CCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCcc----CCccCccCCCCC
Q 042735 97 --NGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNF----FGEIASNWGKCP 170 (667)
Q Consensus 97 --~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~ 170 (667)
+.+|+.+++.. +++..-+.+|.+|++|+.|+|..|.+....+.+|....++..+.+..+.. ...-..+|..+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 78888888887 77766677788888888888888888777777787777777776655321 112233444455
Q ss_pred CCC-EEEccCCcCCCCcCccc----------------------------cCCCCcCeeeccCCcccccCCccccCCcccc
Q 042735 171 KLS-TLNVSMNNITRSIPLEI----------------------------GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLT 221 (667)
Q Consensus 171 ~L~-~L~L~~n~l~~~~p~~~----------------------------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 221 (667)
.|+ .+.+.... .++..+ ..+++|+.++|++|.+..+.+..|.++.+|+
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 555 33332211 111100 1256677777777666655556677777777
Q ss_pred eeecccccccccCcccccCCCCCC-eeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEE
Q 042735 222 KLILRGNQLIGHLPSEIGSLTKLE-FLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELE 296 (667)
Q Consensus 222 ~L~L~~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ 296 (667)
.|+|.+| +....+.+|.++++|+ .+++.+ .++.+.+.+|.++.+|+.++++.|++...-+..|..+++|+.++
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 7777666 5545555667777777 777765 55555566677777777777766665555555666676776664
|
| >1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-16 Score=161.60 Aligned_cols=121 Identities=17% Similarity=0.104 Sum_probs=90.5
Q ss_pred HcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCch-----H---------HhHHHHHHHHHHHHhcCCCCeeE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQ-----I---------ADQKEFFAEIEALTKIRHRNIVK 485 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~-----~---------~~~~~~~~E~~~l~~l~H~niv~ 485 (667)
-..|...+.||+|+||.||+|...+++.+|||.+........ . .....+.+|++++++++| ++
T Consensus 89 ~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~---~~ 165 (282)
T 1zar_A 89 GKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG---LA 165 (282)
T ss_dssp TSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTT---SS
T ss_pred CeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccC---CC
Confidence 344566789999999999999987789999999864321100 0 134579999999999995 55
Q ss_pred EEEEEEeCCceEEEEEecCCCChHHHhcccc------------------CCcccccccCCeeecCCCceEEeccccccc
Q 042735 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDA------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKF 546 (667)
Q Consensus 486 ~~g~~~~~~~~~lv~ey~~~g~L~~~l~~~~------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~ 546 (667)
+++++.. +..++||||+++|+|.+ +.... ...|.||||+|||++ ++.+||+|||+|+.
T Consensus 166 v~~~~~~-~~~~lvmE~~~g~~L~~-l~~~~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~-~~~vkl~DFG~a~~ 241 (282)
T 1zar_A 166 VPKVYAW-EGNAVLMELIDAKELYR-VRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EEGIWIIDFPQSVE 241 (282)
T ss_dssp SCCEEEE-ETTEEEEECCCCEEGGG-CCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TTEEEECCCTTCEE
T ss_pred cCeEEec-cceEEEEEecCCCcHHH-cchhhHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-CCcEEEEECCCCeE
Confidence 5554433 56799999999999987 43221 123459999999999 99999999999974
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-16 Score=145.42 Aligned_cols=130 Identities=27% Similarity=0.340 Sum_probs=73.5
Q ss_pred cEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCc-cCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccC
Q 042735 125 VRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIAS-NWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSL 203 (667)
Q Consensus 125 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 203 (667)
+.+++++|+++. +|..+. .+|++|++++|.+.+..+. .|..+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 456666666643 333221 2566666666665544433 355566666666666666555555566666666666666
Q ss_pred CcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCcc
Q 042735 204 NHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL 257 (667)
Q Consensus 204 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 257 (667)
|.+.+..+..|.++++|+.|+|++|++++..|..+..+++|++|+|++|.+.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 666555555555556666666666665555555555555666666666555543
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=144.53 Aligned_cols=131 Identities=24% Similarity=0.306 Sum_probs=80.2
Q ss_pred CEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCc-cccCCCCcCeeeccCCcccccCCccccCCcccceeeccc
Q 042735 149 TFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPL-EIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRG 227 (667)
Q Consensus 149 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 227 (667)
+++++++|.+ +.+|..+.. +|+.|++++|.+++..+. .+.++++|++|+|++|.+.+..|..|.++++|+.|+|++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4566666665 344444332 566666666666554443 356666666666666666666666666666666666666
Q ss_pred ccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCcccc
Q 042735 228 NQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQEL 282 (667)
Q Consensus 228 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~ 282 (667)
|++++..+..|.++++|++|+|++|++++..|..+..+++|+.|++++|.+....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 6666655555666666666666666666666666666666666666666655443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.63 E-value=9.8e-16 Score=142.00 Aligned_cols=131 Identities=24% Similarity=0.194 Sum_probs=67.4
Q ss_pred CCCCEEEccCCcCC-CCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeee
Q 042735 170 PKLSTLNVSMNNIT-RSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLN 248 (667)
Q Consensus 170 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 248 (667)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+.+|..++.+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34444444444443 33444444455555555555554433 3455555555555555555544454454555555555
Q ss_pred ccCCcCCccc-hhhhhcccCCCeecCCCccCccccc---hhhhcCCCCCEEECcCCCC
Q 042735 249 LSTNRFSSLI-PESLGNLLKLHYLDLSKYQFIQELP---KELGKLVQLSELELSHNFL 302 (667)
Q Consensus 249 Ls~N~l~~~~-p~~~~~l~~L~~L~ls~n~~~~~~p---~~l~~l~~L~~L~l~~n~l 302 (667)
|++|.+++.. +..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 5555555432 1455555555555555555443333 2555566666666666654
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7e-16 Score=142.98 Aligned_cols=128 Identities=24% Similarity=0.238 Sum_probs=58.2
Q ss_pred CCEEECcCCccC-CccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecc
Q 042735 148 LTFLDISDNNFF-GEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILR 226 (667)
Q Consensus 148 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 226 (667)
|+.|++++|.+. +.+|..+..+++|+.|++++|.+++. ..+..+++|++|+|++|.+.+.+|..+..+++|+.|+++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 333333333333 23333333444444444444444332 334444444444444444444344444444455555555
Q ss_pred cccccccC-cccccCCCCCCeeeccCCcCCccch---hhhhcccCCCeecCCCcc
Q 042735 227 GNQLIGHL-PSEIGSLTKLEFLNLSTNRFSSLIP---ESLGNLLKLHYLDLSKYQ 277 (667)
Q Consensus 227 ~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~ls~n~ 277 (667)
+|.+.+.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 55444321 1345555555555555555554433 345555555555555554
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.62 E-value=6.6e-16 Score=140.07 Aligned_cols=126 Identities=22% Similarity=0.246 Sum_probs=60.2
Q ss_pred CCCEEECcCCccC-CccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeec
Q 042735 147 NLTFLDISDNNFF-GEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLIL 225 (667)
Q Consensus 147 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 225 (667)
+|+.|++++|.+. +.+|..+..+++|+.|++++|.+++. ..+.++++|++|++++|.+.+.+|..++.+++|+.|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 4455555555544 34444445555555555555555433 33444555555555555544434444444445555555
Q ss_pred cccccccc-CcccccCCCCCCeeeccCCcCCccch---hhhhcccCCCeecCC
Q 042735 226 RGNQLIGH-LPSEIGSLTKLEFLNLSTNRFSSLIP---ESLGNLLKLHYLDLS 274 (667)
Q Consensus 226 ~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~ls 274 (667)
++|.+.+. .+..++.+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55544432 12444555555555555555544433 344444555555443
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=137.75 Aligned_cols=129 Identities=23% Similarity=0.197 Sum_probs=114.6
Q ss_pred CCCCCEEEccCCcCC-CCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCee
Q 042735 169 CPKLSTLNVSMNNIT-RSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFL 247 (667)
Q Consensus 169 l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 247 (667)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..++.+++|+.|++++|.+.+.+|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 478999999999998 77888889999999999999999876 778999999999999999998788888889999999
Q ss_pred eccCCcCCcc-chhhhhcccCCCeecCCCccCccccc---hhhhcCCCCCEEECcC
Q 042735 248 NLSTNRFSSL-IPESLGNLLKLHYLDLSKYQFIQELP---KELGKLVQLSELELSH 299 (667)
Q Consensus 248 ~Ls~N~l~~~-~p~~~~~l~~L~~L~ls~n~~~~~~p---~~l~~l~~L~~L~l~~ 299 (667)
++++|.+++. .+..+..+++|+.|++++|++.+..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999884 34789999999999999999876655 5789999999999864
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7.6e-14 Score=147.70 Aligned_cols=264 Identities=11% Similarity=0.052 Sum_probs=152.8
Q ss_pred CCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcccccccccCCccccCCCCccEEEe
Q 042735 26 LKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIV 105 (667)
Q Consensus 26 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 105 (667)
+..++.+.+.++ ++.+-..+|.+. +|+.+.|.+| ++..-...|.+..|+.+.|.+ .+.......|.++.+|+.+++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 355555555433 333444455543 4566655444 443334444444555555554 444444455556666666666
Q ss_pred eCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCC
Q 042735 106 GGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRS 185 (667)
Q Consensus 106 ~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 185 (667)
..|+++..-..+|. +.+|+.+.|..+ ++.....+|.++.+|+.+++.+| +...-..+|.+ .+|+.+.+. +.++..
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 66666544444444 466666666533 55555566666666666666654 33333445555 566666663 334444
Q ss_pred cCccccCCCCcCeeeccCCccc-----ccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchh
Q 042735 186 IPLEIGNLSTLNEFDLSLNHIV-----GKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPE 260 (667)
Q Consensus 186 ~p~~~~~l~~L~~L~L~~n~l~-----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 260 (667)
.+..|.++++|+.+++..|.+. ...+..|.++++|+.+.+.+ .+...-..+|.++.+|+.++|..| ++.+.+.
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 4556666777777776665543 23455677777777777763 355455566777777777777544 5555566
Q ss_pred hhhcccCCCeecCCCccCccccchhhhcCC-CCCEEECcCCC
Q 042735 261 SLGNLLKLHYLDLSKYQFIQELPKELGKLV-QLSELELSHNF 301 (667)
Q Consensus 261 ~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~-~L~~L~l~~n~ 301 (667)
+|.++ +|+.+++.+|......+..|..++ ++..|.+..+.
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 77777 777777777766555555566653 56677665543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-14 Score=148.91 Aligned_cols=262 Identities=12% Similarity=0.106 Sum_probs=207.9
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEc
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLAL 81 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L 81 (667)
..++.+.+.+ .++.+.+.+|.++ +|+.+.|..| +..+-..+|.+. +|+.+.+.+ .+...-+..|.. .+|+.++|
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 4566677765 4777778888886 7999999877 666667788874 699999975 566555667766 56999999
Q ss_pred ccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCc
Q 042735 82 ENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGE 161 (667)
Q Consensus 82 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 161 (667)
.+|.++......|. ..+|+.+.+..+ +...-..+|.++++|+.+.|..| ++.....+|.+ .+|+.+.+. +.+...
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 99988865555555 689999999744 77667788999999999999875 66667778887 789999995 446555
Q ss_pred cCccCCCCCCCCEEEccCCcCC-----CCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcc
Q 042735 162 IASNWGKCPKLSTLNVSMNNIT-----RSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPS 236 (667)
Q Consensus 162 ~~~~~~~l~~L~~L~L~~n~l~-----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 236 (667)
-..+|.+|++|+.+.+.+|.+. ...+..|.++++|+.++|.. .+..+-...|.++.+|+.+.|..| +...-..
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 6789999999999999988765 34567799999999999994 476666778999999999999665 6656677
Q ss_pred cccCCCCCCeeeccCCcCCccchhhhhccc-CCCeecCCCcc
Q 042735 237 EIGSLTKLEFLNLSTNRFSSLIPESLGNLL-KLHYLDLSKYQ 277 (667)
Q Consensus 237 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~ls~n~ 277 (667)
+|.++ +|+.+++++|.+....+..|.+++ .++.|.+..+.
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 89999 999999999998877777787774 78888887664
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=137.72 Aligned_cols=105 Identities=28% Similarity=0.354 Sum_probs=46.3
Q ss_pred CCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeecc
Q 042735 171 KLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLS 250 (667)
Q Consensus 171 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 250 (667)
+|+.|+|++|.++ .+|..|.++++|+.|+|++|.+.+..+..|.++++|+.|+|++|++++..|..|.++++|+.|+|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4444444444443 233444444444444444444444434444444444444444444444444444444444444444
Q ss_pred CCcCCccchhhhhcccCCCeecCCCc
Q 042735 251 TNRFSSLIPESLGNLLKLHYLDLSKY 276 (667)
Q Consensus 251 ~N~l~~~~p~~~~~l~~L~~L~ls~n 276 (667)
+|.++...+..|..+++|+.|++++|
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCeeChhhhhcCccccEEEeCCC
Confidence 44444433333444444444444443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=134.57 Aligned_cols=131 Identities=24% Similarity=0.232 Sum_probs=74.3
Q ss_pred cEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCC
Q 042735 125 VRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLN 204 (667)
Q Consensus 125 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 204 (667)
+.+++++|+++.. |. ...++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+.++++|++|+|++|
T Consensus 10 ~~l~~~~~~l~~~-p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSV-PT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSC-CT--TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccC-CC--CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4455555555432 21 12245566666666655444445556666666666666665544444566666666666666
Q ss_pred cccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccc
Q 042735 205 HIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLI 258 (667)
Q Consensus 205 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 258 (667)
.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|+|++|.+.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 666555555566666666666666665444444556666666666666665543
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=136.94 Aligned_cols=128 Identities=20% Similarity=0.282 Sum_probs=91.7
Q ss_pred cEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCC
Q 042735 125 VRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLN 204 (667)
Q Consensus 125 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 204 (667)
+.+++++|.++. +|..+ ..+|++|++++|.+. .+|..|..+++|+.|+|++|.+++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 455666666653 23222 246677777777764 45566777777777777777777766667777778888888888
Q ss_pred cccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCc
Q 042735 205 HIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSS 256 (667)
Q Consensus 205 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 256 (667)
.+.+..+..|..+++|+.|+|++|.++...+..|..+++|+.|+|++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8777777778888888888888888876666677888888888888888764
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-14 Score=133.05 Aligned_cols=128 Identities=23% Similarity=0.227 Sum_probs=65.0
Q ss_pred CEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccc
Q 042735 149 TFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGN 228 (667)
Q Consensus 149 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 228 (667)
+.+++++|.+.. +|..+ .++|+.|++++|.+++..+..+.++++|++|++++|.+.+..+..|..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 456666665542 33222 245566666666555544444555555555555555555444444455555555555555
Q ss_pred cccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCc
Q 042735 229 QLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFI 279 (667)
Q Consensus 229 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~ 279 (667)
.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 555444444455555555555555555443333444444444444444443
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-16 Score=151.19 Aligned_cols=131 Identities=24% Similarity=0.293 Sum_probs=72.3
Q ss_pred cCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCC
Q 042735 165 NWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKL 244 (667)
Q Consensus 165 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 244 (667)
.+..+++|+.|++++|.+++ +| .+.++++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+ +| .++.+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 44455555555555555544 33 4555555555555555554 344445555566666666666553 23 45555666
Q ss_pred CeeeccCCcCCccch-hhhhcccCCCeecCCCccCccccch----------hhhcCCCCCEEECcCCCC
Q 042735 245 EFLNLSTNRFSSLIP-ESLGNLLKLHYLDLSKYQFIQELPK----------ELGKLVQLSELELSHNFL 302 (667)
Q Consensus 245 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~ls~n~~~~~~p~----------~l~~l~~L~~L~l~~n~l 302 (667)
++|++++|++++..+ ..+..+++|+.|++++|.+.+..|. .+..+++|+.|| +|.+
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 666666666654322 3455566666666666665444433 266777777775 4444
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-14 Score=133.31 Aligned_cols=131 Identities=24% Similarity=0.241 Sum_probs=64.9
Q ss_pred CCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcC
Q 042735 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLN 197 (667)
Q Consensus 118 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 197 (667)
+.++++|+.|++++|+++.. +......++|++|++++|.+.+. ..+..+++|++|++++|.+++..+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~--------- 82 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG--------- 82 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC---------
T ss_pred cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcc---------
Confidence 44556666666666666532 33222223566666666655432 3444555555555555555433222
Q ss_pred eeeccCCcccccCCccccCCcccceeecccccccccCcc--cccCCCCCCeeeccCCcCCccchh----hhhcccCCCee
Q 042735 198 EFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPS--EIGSLTKLEFLNLSTNRFSSLIPE----SLGNLLKLHYL 271 (667)
Q Consensus 198 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L 271 (667)
.|..+++|+.|++++|.+. .+|. .++.+++|+.|++++|.++.. |. .+..+++|+.|
T Consensus 83 ---------------~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~L 145 (176)
T 1a9n_A 83 ---------------LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVL 145 (176)
T ss_dssp ---------------HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEE
T ss_pred ---------------hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCcccee
Confidence 2344444444444444443 2332 445555555555555555432 33 25555556666
Q ss_pred cCCCcc
Q 042735 272 DLSKYQ 277 (667)
Q Consensus 272 ~ls~n~ 277 (667)
+++.|.
T Consensus 146 d~~~n~ 151 (176)
T 1a9n_A 146 DFQKVK 151 (176)
T ss_dssp TTEECC
T ss_pred CCCcCC
Confidence 655554
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-14 Score=130.32 Aligned_cols=132 Identities=20% Similarity=0.226 Sum_probs=108.0
Q ss_pred CCCCCCCCEEEccCCcCCCCcCccccCCC-CcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCC
Q 042735 166 WGKCPKLSTLNVSMNNITRSIPLEIGNLS-TLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKL 244 (667)
Q Consensus 166 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 244 (667)
+..+.+|+.|++++|.++. +|. +..+. +|++|++++|.+.+. ..|..+++|+.|++++|.+++..+..++.+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4556777888888887774 343 44444 899999999988865 578899999999999999987655666999999
Q ss_pred CeeeccCCcCCccchh--hhhcccCCCeecCCCccCccccchh----hhcCCCCCEEECcCCCCC
Q 042735 245 EFLNLSTNRFSSLIPE--SLGNLLKLHYLDLSKYQFIQELPKE----LGKLVQLSELELSHNFLG 303 (667)
Q Consensus 245 ~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~ls~n~~~~~~p~~----l~~l~~L~~L~l~~n~l~ 303 (667)
++|+|++|.++. +|. .+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999999965 455 7889999999999999975 56664 899999999999999763
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-16 Score=148.54 Aligned_cols=147 Identities=25% Similarity=0.261 Sum_probs=108.9
Q ss_pred CCCCcEEEccCCccccccch------hhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCC
Q 042735 121 CPNLVRISLEGNNMRGTISE------AFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLS 194 (667)
Q Consensus 121 l~~L~~L~L~~n~~~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 194 (667)
...++.++++.+.+++..|. .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.++ .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34445555555555554443 77778888888888887765 55 7777888888888888887 4666677778
Q ss_pred CcCeeeccCCcccccCCccccCCcccceeecccccccccCc-ccccCCCCCCeeeccCCcCCccchh----------hhh
Q 042735 195 TLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLP-SEIGSLTKLEFLNLSTNRFSSLIPE----------SLG 263 (667)
Q Consensus 195 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~----------~~~ 263 (667)
+|++|++++|.+.+ +| .+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+.+|. .+.
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 88888888888876 34 57888889999999988875332 4678889999999999988776554 377
Q ss_pred cccCCCeec
Q 042735 264 NLLKLHYLD 272 (667)
Q Consensus 264 ~l~~L~~L~ 272 (667)
.+++|+.||
T Consensus 172 ~l~~L~~Ld 180 (198)
T 1ds9_A 172 RLPNLKKLD 180 (198)
T ss_dssp HCSSCSEEC
T ss_pred hCCCcEEEC
Confidence 888999887
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-12 Score=119.96 Aligned_cols=106 Identities=25% Similarity=0.275 Sum_probs=67.1
Q ss_pred CEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccc
Q 042735 149 TFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGN 228 (667)
Q Consensus 149 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 228 (667)
+.|++++|.+.. +|..+ .++|+.|+|++|.+++..|..|.++++|++|+|++|++.+..+..|..+++|+.|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 455666665543 44433 256666666666666666666666666777777766666555555666677777777777
Q ss_pred cccccCcccccCCCCCCeeeccCCcCCcc
Q 042735 229 QLIGHLPSEIGSLTKLEFLNLSTNRFSSL 257 (667)
Q Consensus 229 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 257 (667)
++.+..+..|..+++|+.|+|++|.++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 76655555566677777777777766543
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-12 Score=119.20 Aligned_cols=105 Identities=21% Similarity=0.261 Sum_probs=67.0
Q ss_pred CEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccc
Q 042735 149 TFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGN 228 (667)
Q Consensus 149 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 228 (667)
+.+++++|.+. .+|..+. ++|+.|+|++|.+++..|..|.++++|++|+|++|++.+..+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45566666553 4444432 56666666666666666666666667777777777666555555666777777777777
Q ss_pred cccccCcccccCCCCCCeeeccCCcCCc
Q 042735 229 QLIGHLPSEIGSLTKLEFLNLSTNRFSS 256 (667)
Q Consensus 229 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 256 (667)
++.+..+..|..+++|+.|+|++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7665544456667777777777777654
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-12 Score=119.22 Aligned_cols=105 Identities=28% Similarity=0.291 Sum_probs=70.0
Q ss_pred CCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccC
Q 042735 172 LSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLST 251 (667)
Q Consensus 172 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 251 (667)
.+.+++++|.++. +|..+. ++|++|+|++|.+.+..|..|.++++|+.|+|++|++++..+..|.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4667777777764 444442 5677777777777766666677777777777777777665555566777777777777
Q ss_pred CcCCccchhhhhcccCCCeecCCCccCc
Q 042735 252 NRFSSLIPESLGNLLKLHYLDLSKYQFI 279 (667)
Q Consensus 252 N~l~~~~p~~~~~l~~L~~L~ls~n~~~ 279 (667)
|++++..+..|..+++|+.|+|++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7776665556666666666666666553
|
| >1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=129.44 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=84.4
Q ss_pred CcCcceeecccCeEEEEEEe-CCCce--EEEEecCCCCCCc--------------------hHHhHHHHHHHHHHHHhcC
Q 042735 423 FDAKYCIGSGRHGSVYRAEL-PSKEF--LAVKKFNSPLPSD--------------------QIADQKEFFAEIEALTKIR 479 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~-~~~~~--~avk~~~~~~~~~--------------------~~~~~~~~~~E~~~l~~l~ 479 (667)
|+....||+|+||.||+|.. .+|+. ||||++....... .......+.+|++++.+++
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999987 77888 9999865432110 0111236889999999998
Q ss_pred CCCe--eEEEEEEEeCCceEEEEEecCC-C----ChHHHhcc----------------------ccCCcccccccCCeee
Q 042735 480 HRNI--VKFYGFCSHARHSILIYEYLKR-G----SLATNLSN----------------------DAAAEELDISSKNVLL 530 (667)
Q Consensus 480 H~ni--v~~~g~~~~~~~~~lv~ey~~~-g----~L~~~l~~----------------------~~~~~~~dlk~~NiLl 530 (667)
|+++ ...+++ +..++||||+.+ | +|.+.... .....|.||||+|||+
T Consensus 129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~givHrDlkp~NILl 204 (258)
T 1zth_A 129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMY 204 (258)
T ss_dssp HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGGGGGSCHHHHHHHHHHHHHHHHHTSCEECSSCSTTSEEE
T ss_pred hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhccChHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEE
Confidence 8754 444432 357899999942 4 56554322 1122355999999999
Q ss_pred cCCCceEEecccccccc
Q 042735 531 DLEHKAHVSDFGIAKFL 547 (667)
Q Consensus 531 d~~~~~kl~DFGla~~~ 547 (667)
+. .++|+|||+|...
T Consensus 205 ~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 205 ID--KVYFIDMGQAVTL 219 (258)
T ss_dssp SS--SEEECCCTTCEET
T ss_pred cC--cEEEEECcccccC
Confidence 98 9999999999764
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-12 Score=118.42 Aligned_cols=103 Identities=24% Similarity=0.307 Sum_probs=66.5
Q ss_pred CEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCC
Q 042735 173 STLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTN 252 (667)
Q Consensus 173 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 252 (667)
+.+++++|.+. .+|..+. ++|++|+|++|.+.+..|..|.++++|+.|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777775 3454443 56777777777776666666667777777777777766554445566667777777777
Q ss_pred cCCccchhhhhcccCCCeecCCCccC
Q 042735 253 RFSSLIPESLGNLLKLHYLDLSKYQF 278 (667)
Q Consensus 253 ~l~~~~p~~~~~l~~L~~L~ls~n~~ 278 (667)
++++..+..|..+++|+.|++++|.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 66665555566666666666666654
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-10 Score=123.31 Aligned_cols=283 Identities=12% Similarity=0.041 Sum_probs=128.0
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcc
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALE 82 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~ 82 (667)
.+|+.+.|.. .++.+...+|.++.+|+.++|.++ +..+-..+|.++++|+.+.+..+ +.......|....+....+.
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence 4555555543 255555555555666666666443 33333445555555555554433 22222223333222222211
Q ss_pred cccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCcc
Q 042735 83 NNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEI 162 (667)
Q Consensus 83 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 162 (667)
. .........|.++.+|+.+.+..+- ...-..+|.++++|+.+.+..+ ++......|.....|+.+.+..+.. .+
T Consensus 148 ~-~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i 222 (394)
T 4fs7_A 148 E-GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY--YL 222 (394)
T ss_dssp T-TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EE
T ss_pred c-cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce--Ee
Confidence 1 1111223455666677777765442 3233456667777777777655 4444455666666666665554422 11
Q ss_pred CccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeeccccc-------------
Q 042735 163 ASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQ------------- 229 (667)
Q Consensus 163 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~------------- 229 (667)
...+.....|+.+.+..+. +......+.++..|+.+.+..+.. ......|..+..++.+....+.
T Consensus 223 ~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~ 300 (394)
T 4fs7_A 223 GDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLT 300 (394)
T ss_dssp CTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCC
T ss_pred ehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeecccccccccccc
Confidence 2222233445555443321 112223344555555555544322 1223334444444444433332
Q ss_pred -------ccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEEC
Q 042735 230 -------LIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELEL 297 (667)
Q Consensus 230 -------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l 297 (667)
+...-..+|.++.+|+.++|.++ ++.+...+|.++.+|+.+++..+ +...-..+|..+.+|+.+++
T Consensus 301 ~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 301 EVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp EEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred ccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 22222334444555555555422 33333444445555555555433 22222334444455555544
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.9e-13 Score=140.81 Aligned_cols=159 Identities=14% Similarity=0.147 Sum_probs=69.5
Q ss_pred CCCcEEEccCCccccccchhhhcC-----CCCCEEECcCCccCCccCccC-CCCCCCCEEEccCCcCCCCcCccc-----
Q 042735 122 PNLVRISLEGNNMRGTISEAFGIY-----LNLTFLDISDNNFFGEIASNW-GKCPKLSTLNVSMNNITRSIPLEI----- 190 (667)
Q Consensus 122 ~~L~~L~L~~n~~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~~----- 190 (667)
++|+.|+|++|.++......+... .+|+.|+|++|.+.......+ ..+++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 345566666665543332222221 455555555555533221111 123345555555555543221111
Q ss_pred cCCCCcCeeeccCCccccc----CCccccCCcccceeeccccccccc----CcccccCCCCCCeeeccCCcCCcc----c
Q 042735 191 GNLSTLNEFDLSLNHIVGK----IPKEFGKLNSLTKLILRGNQLIGH----LPSEIGSLTKLEFLNLSTNRFSSL----I 258 (667)
Q Consensus 191 ~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~ 258 (667)
...++|++|+|++|.+... ++..+..+++|+.|+|++|.+... +...+...++|+.|+|++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 1234455555555554321 122233444555555555554321 223344445555555555555432 1
Q ss_pred hhhhhcccCCCeecCCCccCcc
Q 042735 259 PESLGNLLKLHYLDLSKYQFIQ 280 (667)
Q Consensus 259 p~~~~~l~~L~~L~ls~n~~~~ 280 (667)
...+...++|+.|+|++|.+..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 2223333455555555555433
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.6e-13 Score=140.27 Aligned_cols=112 Identities=15% Similarity=0.234 Sum_probs=62.5
Q ss_pred CCCCCcEEEccCCccccc----cchhhhcCCCCCEEECcCCccCCc----cCccCCCCCCCCEEEccCCcCCCC----cC
Q 042735 120 NCPNLVRISLEGNNMRGT----ISEAFGIYLNLTFLDISDNNFFGE----IASNWGKCPKLSTLNVSMNNITRS----IP 187 (667)
Q Consensus 120 ~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~p 187 (667)
..++|++|+|++|.++.. ++..+...++|++|+|++|.+... ++..+...++|+.|+|++|.++.. ++
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 345677777777766532 233445666777777777766432 234455666777777777777542 23
Q ss_pred ccccCCCCcCeeeccCCcccccCCccccCC---c--ccceee--ccccccc
Q 042735 188 LEIGNLSTLNEFDLSLNHIVGKIPKEFGKL---N--SLTKLI--LRGNQLI 231 (667)
Q Consensus 188 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l---~--~L~~L~--L~~n~l~ 231 (667)
..+...++|++|+|++|.+.+.-...+..+ . .|+.+. +..|.+.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 334456778888888887754333223222 1 155555 5555543
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.8e-10 Score=117.52 Aligned_cols=279 Identities=13% Similarity=0.064 Sum_probs=169.2
Q ss_pred CCCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCcccc----------------------CCCCCCeeec
Q 042735 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVG----------------------NLSSLRYLFL 58 (667)
Q Consensus 1 ~L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~----------------------~l~~L~~L~L 58 (667)
++++|+.++|.++ ++.+...+|.++.+|+.+.+..+ +......+|. ++++|+.+.+
T Consensus 92 ~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l 169 (394)
T 4fs7_A 92 NCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSL 169 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCccccccchhhhcccCCCcEEec
Confidence 3578999999865 77777888999999998887655 2223333444 4444444444
Q ss_pred cccccceeCCCCCcc-cccCEEEcccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccc
Q 042735 59 FENNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGT 137 (667)
Q Consensus 59 ~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~ 137 (667)
.++ +.......|.. ..|+.+.+..| +.......+.+...|+.+.+..+... +........+|+.+.+..+ ++..
T Consensus 170 ~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i 244 (394)
T 4fs7_A 170 PDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTEL 244 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEE
T ss_pred CCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceec
Confidence 332 11122222222 23444444333 22222233333344444333322211 1112223344555554332 2223
Q ss_pred cchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCC
Q 042735 138 ISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKL 217 (667)
Q Consensus 138 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 217 (667)
....|.....|+.+.+..+.. ......|..+..++.+.+..+.+ ....|..+.+|+.+.+..+ +..+-...|.++
T Consensus 245 ~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c 319 (394)
T 4fs7_A 245 GKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESC 319 (394)
T ss_dssp CSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC
T ss_pred ccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCC
Confidence 345566667777777765532 33455677777777777666543 2345778889999998765 555556789999
Q ss_pred cccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEE
Q 042735 218 NSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSEL 295 (667)
Q Consensus 218 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L 295 (667)
.+|+.+++..+ +...-..+|.++.+|+.+++..| ++.+...+|.++.+|+.+++..+ ...+...|..+.+|+.+
T Consensus 320 ~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 320 TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 99999999755 55555678999999999999876 77667788999999999999765 34455667777777654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.16 E-value=7.6e-11 Score=122.60 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=64.1
Q ss_pred EECcCC-ccCCccCccCCCCCCCCEEEccC-CcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccc
Q 042735 151 LDISDN-NFFGEIASNWGKCPKLSTLNVSM-NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGN 228 (667)
Q Consensus 151 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 228 (667)
++++++ .+. .+|. +..+++|+.|+|++ |.+.+..+..|.+|++|+.|+|++|++.+..|..|.+|++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 345554 443 2454 66666666666664 6666555556666666666666666666666666666667777777777
Q ss_pred cccccCcccccCCCCCCeeeccCCcCCc
Q 042735 229 QLIGHLPSEIGSLTKLEFLNLSTNRFSS 256 (667)
Q Consensus 229 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 256 (667)
+|++..+..+..++ |+.|+|.+|.+..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 66654444555444 7777777777654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=120.96 Aligned_cols=103 Identities=21% Similarity=0.204 Sum_probs=77.2
Q ss_pred EEEccCC-cCCCCcCccccCCCCcCeeeccC-CcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccC
Q 042735 174 TLNVSMN-NITRSIPLEIGNLSTLNEFDLSL-NHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLST 251 (667)
Q Consensus 174 ~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 251 (667)
.++.+++ .++. +|. +..+++|+.|+|++ |.+.+..+..|++|++|+.|+|++|+|++..|..|+++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 6764 566 77888888888885 888777767788888888888888888877777788888888888888
Q ss_pred CcCCccchhhhhcccCCCeecCCCccCc
Q 042735 252 NRFSSLIPESLGNLLKLHYLDLSKYQFI 279 (667)
Q Consensus 252 N~l~~~~p~~~~~l~~L~~L~ls~n~~~ 279 (667)
|+|++..+..+..+. |+.|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 888776655555554 777777777654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.9e-09 Score=109.75 Aligned_cols=285 Identities=10% Similarity=0.119 Sum_probs=130.7
Q ss_pred CcEEeccCCcCcCCCCccccCCCCCCEEEccCcc---ccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEE
Q 042735 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQ---FRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLA 80 (667)
Q Consensus 5 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~ 80 (667)
|+.+.+..+ ++.+...+|.++.+|+.+.+..|. +..+-..+|.++.+|+.+.+..+ ++......|.. ..|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 555555543 555556666666666666665553 44334455666666666655433 33222233333 3455555
Q ss_pred cccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCC
Q 042735 81 LENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFG 160 (667)
Q Consensus 81 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 160 (667)
+..+ +.......+.....|+.+.+..+ +...-..+|. ..+|+.+.+..+-. .....+|....++.......+....
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccceeccccccccc
Confidence 5432 22233334444455555555432 2212222232 23455555443321 1233344444444444332221110
Q ss_pred ccC-------------ccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeeccc
Q 042735 161 EIA-------------SNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRG 227 (667)
Q Consensus 161 ~~~-------------~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 227 (667)
.-- ..+.....+..+.+..+ +...-...|.++..|+.+.+..+.. ..-...|.++.+|+.+.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~ 297 (394)
T 4gt6_A 220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS 297 (394)
T ss_dssp SSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT
T ss_pred ccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc-eecCcccccccccccccCCC
Confidence 000 00001112222222111 1111223455666666666654322 23344566666666666643
Q ss_pred ccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCC
Q 042735 228 NQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN 300 (667)
Q Consensus 228 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n 300 (667)
.+.......|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ +...-..+|..+.+|+.+++.++
T Consensus 298 -~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 298 -RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp -TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred -cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 233333445666666666666543 44444556666666666666543 23223345666666666666655
|
| >4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.9e-11 Score=125.11 Aligned_cols=122 Identities=10% Similarity=0.041 Sum_probs=80.7
Q ss_pred CcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCC-------------chHH-----hHHHHHHHHHHHHhcCCCCee
Q 042735 423 FDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPS-------------DQIA-----DQKEFFAEIEALTKIRHRNIV 484 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~-------------~~~~-----~~~~~~~E~~~l~~l~H~niv 484 (667)
|++...||+|+||.||+|...+|+.||||+++..... .... .+....+|...|.++.+..+.
T Consensus 97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~ 176 (397)
T 4gyi_A 97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFP 176 (397)
T ss_dssp SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7788899999999999999989999999987532110 0000 011123567777777554442
Q ss_pred EEEEEEEeCCceEEEEEecCCCChHHHhccc------------------cCCcccccccCCeeecCCC----------ce
Q 042735 485 KFYGFCSHARHSILIYEYLKRGSLATNLSND------------------AAAEELDISSKNVLLDLEH----------KA 536 (667)
Q Consensus 485 ~~~g~~~~~~~~~lv~ey~~~g~L~~~l~~~------------------~~~~~~dlk~~NiLld~~~----------~~ 536 (667)
...-+.. ...++||||++++.|.+..... ....|.||||.|||+++++ .+
T Consensus 177 vp~p~~~--~~~~LVME~i~G~~L~~l~~~~~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~ 254 (397)
T 4gyi_A 177 VPEPIAQ--SRHTIVMSLVDALPMRQVSSVPDPASLYADLIALILRLAKHGLIHGDFNEFNILIREEKDAEDPSSITLTP 254 (397)
T ss_dssp CCCEEEE--ETTEEEEECCSCEEGGGCCCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEEEEECSSCTTSEEEEE
T ss_pred CCeeeec--cCceEEEEecCCccHhhhcccHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeCCCCcccccccccce
Confidence 2111111 2347999999998886543221 1223559999999998877 38
Q ss_pred EEeccccccc
Q 042735 537 HVSDFGIAKF 546 (667)
Q Consensus 537 kl~DFGla~~ 546 (667)
.|+||+-+-.
T Consensus 255 ~iID~~Q~V~ 264 (397)
T 4gyi_A 255 IIIXFPQMVS 264 (397)
T ss_dssp EECCCTTCEE
T ss_pred EEEEeCCccc
Confidence 8999997654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-08 Score=105.13 Aligned_cols=276 Identities=13% Similarity=0.115 Sum_probs=188.0
Q ss_pred CcCCCCccccCCC-CCCEEEccCccccccCCccccCCCCCCeeeccccc---cceeCCCCCcc-cccCEEEccccccccc
Q 042735 15 LTGLIPTETWNLK-SLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN---LSGSIPPSVGN-LMLTVLALENNHFTGN 89 (667)
Q Consensus 15 l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~---l~~~~p~~~~~-~~L~~L~L~~n~l~~~ 89 (667)
++.+...+|.+++ .|+.+.+..+ ++.+-..+|.++++|+.+.+..|. ++..-...|.. ..|+.+.+.++ +...
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 4455667788885 5999999765 666777899999999999998764 54333445554 45776666544 4444
Q ss_pred CCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCC
Q 042735 90 LRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKC 169 (667)
Q Consensus 90 ~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 169 (667)
....+....+|+.+.+..+ +...-..++..+.+|+.+.+..+ ++.....+|.. .+|+.+.+..+- ...-..+|..+
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c 204 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSEC 204 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTC
T ss_pred hhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhc
Confidence 4566777888998888643 34344567888899999988765 44455556654 578888876542 23445678888
Q ss_pred CCCCEEEccCCcCCCCcCccc-------------cCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcc
Q 042735 170 PKLSTLNVSMNNITRSIPLEI-------------GNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPS 236 (667)
Q Consensus 170 ~~L~~L~L~~n~l~~~~p~~~-------------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 236 (667)
..+.......+.........+ .....+..+.+.. .+...-...|.++.+|+.+.+..+.. ..-..
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~ 282 (394)
T 4gt6_A 205 FALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV-SIGTG 282 (394)
T ss_dssp TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC-EECTT
T ss_pred cccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc-eecCc
Confidence 888888766554432111111 1122333344432 23333456788999999999976643 34556
Q ss_pred cccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCC
Q 042735 237 EIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN 300 (667)
Q Consensus 237 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n 300 (667)
.|.++++|+.+.+. +.++.+...+|.++.+|+.+++..+ +...-..+|..+.+|+.+.+..+
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS 344 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence 78899999999996 5566666778999999999999865 34444568889999999999654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.7e-10 Score=115.27 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=41.5
Q ss_pred CCCCCCCcEEEccCCcc---------ccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCc
Q 042735 118 LRNCPNLVRISLEGNNM---------RGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPL 188 (667)
Q Consensus 118 l~~l~~L~~L~L~~n~~---------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 188 (667)
+..+++|+.|.+..+.. .+.+...+..+++|+.|+|++|.-. .++. +. +++|+.|+|..|.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH
Confidence 33456666666644321 1123344566667777777665211 1222 22 56677777766655432222
Q ss_pred ccc--CCCCcCeeecc
Q 042735 189 EIG--NLSTLNEFDLS 202 (667)
Q Consensus 189 ~~~--~l~~L~~L~L~ 202 (667)
.+. .+++|+.|+|+
T Consensus 212 ~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHSBCTTCCEEEEE
T ss_pred HHHHccCCCCcEEEEe
Confidence 222 46666666664
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-07 Score=97.72 Aligned_cols=285 Identities=12% Similarity=0.059 Sum_probs=177.7
Q ss_pred CCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEccc
Q 042735 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALEN 83 (667)
Q Consensus 4 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~ 83 (667)
+|+.+.+.. .++.+...+|.++.+|+.++|..+ ++.+-..+|.+. +|+.+.+..+ +.......|....|+.+.+.+
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFEFPG 122 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEECCT
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCcccccCCC
Confidence 456666654 366667778888888888888655 555556677766 5777766543 443334445555688887765
Q ss_pred ccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccc------------cchhhhcCCCCCEE
Q 042735 84 NHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGT------------ISEAFGIYLNLTFL 151 (667)
Q Consensus 84 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~------------~~~~~~~l~~L~~L 151 (667)
+- .......+ ...+++.+.+..+ ++..-..++..+.+++...+..+..... ....+.....+..+
T Consensus 123 ~~-~~i~~~~F-~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (379)
T 4h09_A 123 AT-TEIGNYIF-YNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEF 199 (379)
T ss_dssp TC-CEECTTTT-TTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEE
T ss_pred cc-cccccccc-ccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccccc
Confidence 53 21222222 3345665555432 3334445677778888777665443211 11223333444555
Q ss_pred ECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeeccccccc
Q 042735 152 DISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLI 231 (667)
Q Consensus 152 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 231 (667)
.+..+. .......+..+.+|+.+.+..+ +.......+.++..|+.+.+..+ +...-...|.++.+|+.+.+..+ +.
T Consensus 200 ~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~ 275 (379)
T 4h09_A 200 TIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK 275 (379)
T ss_dssp ECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS
T ss_pred ccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce
Confidence 443321 1233445667778888887655 33344556778888888888765 44445567888888888888654 44
Q ss_pred ccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCC
Q 042735 232 GHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHN 300 (667)
Q Consensus 232 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n 300 (667)
......|.++.+|+.+.+.++.++.+...+|.++.+|+.+.+..+ +...-..+|..+.+|+.+.+..+
T Consensus 276 ~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 276 TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 344557788888998888888887777778888888888888754 33333457788888888777543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.4e-09 Score=109.92 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=112.3
Q ss_pred hhhhcCCCCCEEECcCCccC---------CccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccC
Q 042735 140 EAFGIYLNLTFLDISDNNFF---------GEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKI 210 (667)
Q Consensus 140 ~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 210 (667)
.+...+++|+.|.+.++... +.+...+..+++|+.|+|++|.-. .++. +. +++|+.|+|..|.+....
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHH
Confidence 34567889999998765321 123344567899999999988422 2333 43 789999999988765433
Q ss_pred Ccccc--CCcccceeeccc--cccccc-----Ccccc--cCCCCCCeeeccCCcCCccchhhhh---cccCCCeecCCCc
Q 042735 211 PKEFG--KLNSLTKLILRG--NQLIGH-----LPSEI--GSLTKLEFLNLSTNRFSSLIPESLG---NLLKLHYLDLSKY 276 (667)
Q Consensus 211 p~~~~--~l~~L~~L~L~~--n~l~~~-----~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~ls~n 276 (667)
...+. .+++|+.|+|+. |...+. +...+ ..+++|++|+|.+|.+....+..+. .+++|+.|+|+.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 33343 689999999863 221111 11222 3579999999999998754444443 4789999999999
Q ss_pred cCccc----cchhhhcCCCCCEEECcCCCCCCc
Q 042735 277 QFIQE----LPKELGKLVQLSELELSHNFLGRE 305 (667)
Q Consensus 277 ~~~~~----~p~~l~~l~~L~~L~l~~n~l~~~ 305 (667)
.+... ++..+..+++|+.|++++|.++..
T Consensus 290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 87653 444556789999999999988643
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.5e-07 Score=92.66 Aligned_cols=277 Identities=11% Similarity=0.028 Sum_probs=190.3
Q ss_pred CCCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEE
Q 042735 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLA 80 (667)
Q Consensus 1 ~L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~ 80 (667)
++.+|+.++|..+ ++.+...+|.++ +|+.+.+..+ +..+...+|.+ .+|+.+.+..+ +.......|....|....
T Consensus 67 ~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~ 141 (379)
T 4h09_A 67 SCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPGA-TTEIGNYIFYNSSVKRIV 141 (379)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECCTT-CCEECTTTTTTCCCCEEE
T ss_pred CCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCCCc-cccccccccccceeeeee
Confidence 3578999999765 888888889888 6888887655 55445556655 48999999765 333334455555666666
Q ss_pred cccccccccCCccccCCCCccEEEeeCccccc------------ccCccCCCCCCCcEEEccCCccccccchhhhcCCCC
Q 042735 81 LENNHFTGNLRHNICRNGALERVIVGGNHFRG------------PIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNL 148 (667)
Q Consensus 81 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~------------~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 148 (667)
+..+ ++......+....+++...+..+.... .....+.....+..+.+..+. .......+....+|
T Consensus 142 ~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l 219 (379)
T 4h09_A 142 IPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNL 219 (379)
T ss_dssp ECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSC
T ss_pred ccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce-eEEeeccccccccc
Confidence 5543 333444556666777777665433211 112334455666666665443 23455677788889
Q ss_pred CEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccc
Q 042735 149 TFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGN 228 (667)
Q Consensus 149 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 228 (667)
+.+.+..+ +......+|..+..|+.+.+..+ ++..-...|.++.+|+.+.+..+ +.......|.++.+|+.+.+.++
T Consensus 220 ~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~ 296 (379)
T 4h09_A 220 KKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNS 296 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCT
T ss_pred ceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccccc
Confidence 99888655 33344567888999999999776 54455567888999999998754 44455567899999999999988
Q ss_pred cccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcC
Q 042735 229 QLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKL 289 (667)
Q Consensus 229 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l 289 (667)
.+...-..+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+..+ +...-..+|..+
T Consensus 297 ~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 297 AIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 887666778999999999999754 66666778999999999988654 332223445444
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.36 E-value=5.4e-08 Score=95.72 Aligned_cols=79 Identities=25% Similarity=0.300 Sum_probs=38.4
Q ss_pred CCcccceeecccccccc--cCcccccCCCCCCeeeccCCcCCccchhhhhccc--CCCeecCCCccCccccc-------h
Q 042735 216 KLNSLTKLILRGNQLIG--HLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLL--KLHYLDLSKYQFIQELP-------K 284 (667)
Q Consensus 216 ~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~ls~n~~~~~~p-------~ 284 (667)
++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. +|+.|+|++|.+.+.+| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 34555555555555554 2334444555555555555555543 2222222 55555555555544333 1
Q ss_pred hhhcCCCCCEEE
Q 042735 285 ELGKLVQLSELE 296 (667)
Q Consensus 285 ~l~~l~~L~~L~ 296 (667)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244555555544
|
| >1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6 | Back alignment and structure |
|---|
Probab=98.34 E-value=5.7e-07 Score=88.79 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=59.5
Q ss_pred CCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCC--eeEEEEEEEeCCceEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN--IVKFYGFCSHARHSILI 499 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~n--iv~~~g~~~~~~~~~lv 499 (667)
++....+.+.|..+.||++...++..+++|...... ...+.+|+++++.+.+.+ +.+++++...++..++|
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~-------~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v 93 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGA-------LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLL 93 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCT-------TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEE
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCccc-------chhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEE
Confidence 344333334566799999988778889999865421 124678999999887544 45688988888889999
Q ss_pred EEecCCCChH
Q 042735 500 YEYLKRGSLA 509 (667)
Q Consensus 500 ~ey~~~g~L~ 509 (667)
|||++|.++.
T Consensus 94 ~e~i~G~~l~ 103 (264)
T 1nd4_A 94 LGEVPGQDLL 103 (264)
T ss_dssp EECCSSEETT
T ss_pred EEecCCcccC
Confidence 9999998774
|
| >3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-06 Score=86.36 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=70.1
Q ss_pred HHHHHcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCC
Q 042735 416 IIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHAR 494 (667)
Q Consensus 416 ~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~ 494 (667)
+...+++|......+.|+.+.||++... ++.+++|........ ....+.+|+++++.+. |..+.++++++.+.+
T Consensus 9 l~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~----~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~ 83 (263)
T 3tm0_A 9 LKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKG----TTYDVEREKDMMLWLEGKLPVPKVLHFERHDG 83 (263)
T ss_dssp HHHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTT----STTCHHHHHHHHHHHTTTSCCCCEEEEEEETT
T ss_pred HHHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCC----CHHHHHHHHHHHHHHhcCCCCCeEEEEEecCC
Confidence 3455677887788888899999999864 577999987532111 1124788999999885 677889999999988
Q ss_pred ceEEEEEecCCCChHH
Q 042735 495 HSILIYEYLKRGSLAT 510 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~ 510 (667)
..|+||||++|.++.+
T Consensus 84 ~~~lv~e~i~G~~l~~ 99 (263)
T 3tm0_A 84 WSNLLMSEADGVLCSE 99 (263)
T ss_dssp EEEEEEECCSSEEHHH
T ss_pred ceEEEEEecCCeehhh
Confidence 9999999999988865
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=3.8e-07 Score=85.19 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=36.3
Q ss_pred ccCCCCCCeeeccCCcCCcc----chhhhhcccCCCeecC--CCccCccc----cchhhhcCCCCCEEECcCCCC
Q 042735 238 IGSLTKLEFLNLSTNRFSSL----IPESLGNLLKLHYLDL--SKYQFIQE----LPKELGKLVQLSELELSHNFL 302 (667)
Q Consensus 238 ~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l--s~n~~~~~----~p~~l~~l~~L~~L~l~~n~l 302 (667)
+...++|++|+|++|.+... +...+...+.|+.|+| ++|.+... +...+...+.|++|++++|.+
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 33445566666666665432 2334444556666666 55555432 233445556777787777765
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.8e-07 Score=91.95 Aligned_cols=78 Identities=28% Similarity=0.391 Sum_probs=37.8
Q ss_pred CCCCCEEEccCCcCCC--CcCccccCCCCcCeeeccCCcccccCCccccCCc--ccceeecccccccccCcc-------c
Q 042735 169 CPKLSTLNVSMNNITR--SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLN--SLTKLILRGNQLIGHLPS-------E 237 (667)
Q Consensus 169 l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~~p~-------~ 237 (667)
+++|+.|+|++|++++ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|+.|+|++|.+.+.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3444444444444443 2233344455555555555555432 1222222 566666666666554442 2
Q ss_pred ccCCCCCCeee
Q 042735 238 IGSLTKLEFLN 248 (667)
Q Consensus 238 ~~~l~~L~~L~ 248 (667)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45666776664
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=6e-07 Score=83.80 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=18.4
Q ss_pred ccCCCCcCeeec--cCCccccc----CCccccCCcccceeecccccc
Q 042735 190 IGNLSTLNEFDL--SLNHIVGK----IPKEFGKLNSLTKLILRGNQL 230 (667)
Q Consensus 190 ~~~l~~L~~L~L--~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l 230 (667)
+...++|++|+| ++|.+... +...+...++|+.|+|++|.+
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 334444555555 44444322 112233334555555555554
|
| >3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134} | Back alignment and structure |
|---|
Probab=97.73 E-value=6.3e-05 Score=78.00 Aligned_cols=79 Identities=11% Similarity=0.265 Sum_probs=55.9
Q ss_pred cceeecccCeEEEEEEeCCCceEEEEecC--CCCCCchHHhHHHHHHHHHHHHhcC--CCCeeEEEEEEEeC---CceEE
Q 042735 426 KYCIGSGRHGSVYRAELPSKEFLAVKKFN--SPLPSDQIADQKEFFAEIEALTKIR--HRNIVKFYGFCSHA---RHSIL 498 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~~~~~~~avk~~~--~~~~~~~~~~~~~~~~E~~~l~~l~--H~niv~~~g~~~~~---~~~~l 498 (667)
.+.++.|.++.||+....+ ..+++|+.. .... ......+.+|+++++.+. +..+.++++++.+. +..|+
T Consensus 43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~---~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~ 118 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKL---LPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFY 118 (359)
T ss_dssp EEECCC-CCSCEEEEECSS-CEEEEECCCC-------------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEE
T ss_pred EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCC---CCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEE
Confidence 4568899999999998765 567788765 2111 112345788999999887 45688999998776 45899
Q ss_pred EEEecCCCCh
Q 042735 499 IYEYLKRGSL 508 (667)
Q Consensus 499 v~ey~~~g~L 508 (667)
||||++|..+
T Consensus 119 vme~v~G~~l 128 (359)
T 3dxp_A 119 IMEFVSGRVL 128 (359)
T ss_dssp EEECCCCBCC
T ss_pred EEEecCCeec
Confidence 9999998876
|
| >3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A | Back alignment and structure |
|---|
Probab=97.61 E-value=4.9e-05 Score=76.83 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=50.2
Q ss_pred cceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCC--eeEEEEEEEeCC---ceEEE
Q 042735 426 KYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRN--IVKFYGFCSHAR---HSILI 499 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~n--iv~~~g~~~~~~---~~~lv 499 (667)
.+.++.|....||++. ..+++|.... ......+.+|+++++.+. +.. +.+.+++..... ..|+|
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~------~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~v 94 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKH------SRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAG 94 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESS------HHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEE
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCC------cchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEE
Confidence 3568999999999874 4578887532 123456889999998884 322 344555443333 45899
Q ss_pred EEecCCCChH
Q 042735 500 YEYLKRGSLA 509 (667)
Q Consensus 500 ~ey~~~g~L~ 509 (667)
|||++|..+.
T Consensus 95 m~~i~G~~l~ 104 (304)
T 3sg8_A 95 FTKIKGVPLT 104 (304)
T ss_dssp EECCCCEECC
T ss_pred EcccCCeECC
Confidence 9999988764
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.52 E-value=4.8e-05 Score=69.25 Aligned_cols=64 Identities=11% Similarity=0.007 Sum_probs=31.6
Q ss_pred cCCCCCCCcEEEccCCc-cccccchhhhcC----CCCCEEECcCCc-cCCccCccCCCCCCCCEEEccCC
Q 042735 117 CLRNCPNLVRISLEGNN-MRGTISEAFGIY----LNLTFLDISDNN-FFGEIASNWGKCPKLSTLNVSMN 180 (667)
Q Consensus 117 ~l~~l~~L~~L~L~~n~-~~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 180 (667)
.+..+++|++|+|++|. ++..--..++.+ ++|++|+|++|. ++..--..+..+++|+.|+|++|
T Consensus 80 ~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 80 HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 34566666667666664 443322333332 246666666653 43222223344555555555554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.50 E-value=7.4e-05 Score=68.03 Aligned_cols=83 Identities=13% Similarity=0.053 Sum_probs=43.3
Q ss_pred ccceeecccccccccCcccccCCCCCCeeeccCCc-CCccchhhhhcc----cCCCeecCCCcc-CccccchhhhcCCCC
Q 042735 219 SLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNR-FSSLIPESLGNL----LKLHYLDLSKYQ-FIQELPKELGKLVQL 292 (667)
Q Consensus 219 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~ls~n~-~~~~~p~~l~~l~~L 292 (667)
+|+.|+++++.++..--..+.++++|+.|+|++|. ++..--..+..+ ++|+.|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555443323344556666666666653 443222233332 256666666654 333323345566777
Q ss_pred CEEECcCCC
Q 042735 293 SELELSHNF 301 (667)
Q Consensus 293 ~~L~l~~n~ 301 (667)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777664
|
| >4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0027 Score=62.56 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=55.2
Q ss_pred eeecccCe-EEEEEEeCC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceEEEEEecC
Q 042735 428 CIGSGRHG-SVYRAELPS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSILIYEYLK 504 (667)
Q Consensus 428 ~lg~g~~g-~vy~~~~~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~lv~ey~~ 504 (667)
.+..|..| .||+..... +..+.+|+-.. .....+.+|++.|+.+. +--+-++++++.+++..++||||++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~-------~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~ 103 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKG-------SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIP 103 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEET-------HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCC
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCC-------CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeC
Confidence 45556665 689887654 55688887432 22346888999998875 3336678889999999999999999
Q ss_pred CCChHH
Q 042735 505 RGSLAT 510 (667)
Q Consensus 505 ~g~L~~ 510 (667)
|.++.+
T Consensus 104 G~~~~~ 109 (272)
T 4gkh_A 104 GKTAFQ 109 (272)
T ss_dssp SEEHHH
T ss_pred Cccccc
Confidence 887643
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00071 Score=62.75 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=18.1
Q ss_pred CCCCEEEccCc-cccc----cCCccccCCCCCCeeeccccccc
Q 042735 27 KSLVKLGLGGN-QFRG----SLPSSVGNLSSLRYLFLFENNLS 64 (667)
Q Consensus 27 ~~L~~L~L~~n-~l~~----~~p~~~~~l~~L~~L~L~~n~l~ 64 (667)
+.|+.|+|++| +|.. .+-+++..-+.|+.|+|++|+|.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 44555555553 4432 12233444445555555555554
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0038 Score=53.90 Aligned_cols=57 Identities=25% Similarity=0.216 Sum_probs=43.9
Q ss_pred cEEeccCCcCc-CCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccc
Q 042735 6 RELHLRDNYLT-GLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLS 64 (667)
Q Consensus 6 ~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 64 (667)
..++.+++.++ ..+|..+ -.+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36788888887 2356543 247899999999998777778888999999999988663
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.002 Score=59.73 Aligned_cols=86 Identities=13% Similarity=0.109 Sum_probs=43.7
Q ss_pred Ccccceeecccccccc----cCcccccCCCCCCeeeccCCcCCccc----hhhhhcccCCCeecCCCccC--cc-----c
Q 042735 217 LNSLTKLILRGNQLIG----HLPSEIGSLTKLEFLNLSTNRFSSLI----PESLGNLLKLHYLDLSKYQF--IQ-----E 281 (667)
Q Consensus 217 l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~ls~n~~--~~-----~ 281 (667)
-+.|+.|+|++|.+.. .+-..+..-+.|+.|+|++|.|...- -+.+..-..|+.|+|++|.. .+ .
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 3445555555555432 12223334456666777766665331 22233334567777764321 11 2
Q ss_pred cchhhhcCCCCCEEECcCCCC
Q 042735 282 LPKELGKLVQLSELELSHNFL 302 (667)
Q Consensus 282 ~p~~l~~l~~L~~L~l~~n~l 302 (667)
+-..+..-+.|..|+++.|.+
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCCcCeEeccCCCc
Confidence 334455566777888776654
|
| >3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.043 Score=54.97 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=53.0
Q ss_pred ceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCC---CeeEEEEEEE-eCCceEEEEEe
Q 042735 427 YCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHR---NIVKFYGFCS-HARHSILIYEY 502 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~---niv~~~g~~~-~~~~~~lv~ey 502 (667)
+.++.|....||+. +..+++|.... ......+.+|++++..+.+. .+.+.++++. ..+..++||||
T Consensus 25 ~~l~~G~~n~v~~v----g~~~VlR~~~~------~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~ 94 (306)
T 3tdw_A 25 ESLGEGFRNYAILV----NGDWVFRFPKS------QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRK 94 (306)
T ss_dssp EEEEECSSEEEEEE----TTTEEEEEESS------HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEEC
T ss_pred eecCCCcceeEEEE----CCEEEEEecCC------chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEec
Confidence 45788888999998 46688887421 12345688999999999753 2456666664 34567899999
Q ss_pred cCCCChHH
Q 042735 503 LKRGSLAT 510 (667)
Q Consensus 503 ~~~g~L~~ 510 (667)
++|..+.+
T Consensus 95 i~G~~l~~ 102 (306)
T 3tdw_A 95 VQGQILGE 102 (306)
T ss_dssp CCSEECHH
T ss_pred cCCeECch
Confidence 99877643
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.015 Score=50.00 Aligned_cols=37 Identities=38% Similarity=0.406 Sum_probs=34.7
Q ss_pred CCcEEeccCCcCcCCCCccccCCCCCCEEEccCcccc
Q 042735 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFR 40 (667)
Q Consensus 4 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 40 (667)
+|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 7999999999999988888999999999999999875
|
| >3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.28 Score=49.12 Aligned_cols=75 Identities=23% Similarity=0.246 Sum_probs=58.2
Q ss_pred cceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC---CCCeeEEEEEEEeCCceEEEEEe
Q 042735 426 KYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR---HRNIVKFYGFCSHARHSILIYEY 502 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~---H~niv~~~g~~~~~~~~~lv~ey 502 (667)
.+.|+.|....+|+.... +..+++|.... .....|.+|++.|+.+. ...+.+.++++...+..++||||
T Consensus 41 ~~~l~gG~~n~~y~v~~~-~~~~vlK~~~~-------~~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~ 112 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLINDE-VQTVFVKINER-------SYRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEA 112 (312)
T ss_dssp EEEECCSSSSEEEEEESS-SCEEEEEEEEG-------GGHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEEC
T ss_pred eEEeCCccceeeeEEEEC-CCeEEEEeCCc-------ccHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEe
Confidence 346899999999999864 56688887542 12346888999888774 35688888888888889999999
Q ss_pred cCCCCh
Q 042735 503 LKRGSL 508 (667)
Q Consensus 503 ~~~g~L 508 (667)
+++..+
T Consensus 113 l~G~~~ 118 (312)
T 3jr1_A 113 LNKSKN 118 (312)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 999865
|
| >3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.23 Score=49.05 Aligned_cols=78 Identities=22% Similarity=0.216 Sum_probs=54.6
Q ss_pred CcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCC---CCeeEEEEEEEeCCceEEE
Q 042735 423 FDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH---RNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 423 f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H---~niv~~~g~~~~~~~~~lv 499 (667)
....+.+|.|..+.||+.+..+|+.+.||+....... ....|.+|++.|+.+.- --+.+.+++. ..++|
T Consensus 17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~----~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv 88 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPA----LDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLA 88 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCC----CTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEE
T ss_pred eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcc----hhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEE
Confidence 3445668999999999999999999999986543221 12347789998887742 1244555542 34789
Q ss_pred EEecCCCCh
Q 042735 500 YEYLKRGSL 508 (667)
Q Consensus 500 ~ey~~~g~L 508 (667)
|||++++..
T Consensus 89 ~e~l~~~~~ 97 (288)
T 3f7w_A 89 MEWVDERPP 97 (288)
T ss_dssp EECCCCCCC
T ss_pred EEeecccCC
Confidence 999988754
|
| >2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.03 E-value=0.44 Score=48.05 Aligned_cols=72 Identities=17% Similarity=0.332 Sum_probs=39.4
Q ss_pred eeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-----CCCCeeEEE-E--EEEeCCceEEE
Q 042735 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-----RHRNIVKFY-G--FCSHARHSILI 499 (667)
Q Consensus 428 ~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-----~H~niv~~~-g--~~~~~~~~~lv 499 (667)
.++.|..+.||+....++. +++|+.... . .....|++++..+ ..|.++... | +....+..++|
T Consensus 39 ~l~gG~~n~~~~v~~~~~~-~vlk~~~~~-----~---~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l 109 (346)
T 2q83_A 39 VIQGNQMALVWKVHTDSGA-VCLKRIHRP-----E---KKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVV 109 (346)
T ss_dssp ECC----CEEEEEEETTEE-EEEEEECSC-----H---HHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEE
T ss_pred eccccccCcEEEEEeCCCC-EEEEecCCC-----H---HHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEE
Confidence 3566778999999876554 888887541 1 1222344444333 235555410 1 12345678899
Q ss_pred EEecCCCCh
Q 042735 500 YEYLKRGSL 508 (667)
Q Consensus 500 ~ey~~~g~L 508 (667)
|||++|..+
T Consensus 110 ~~~i~G~~~ 118 (346)
T 2q83_A 110 YDWIEGRPF 118 (346)
T ss_dssp EECCCCBCC
T ss_pred EEeecCccC
Confidence 999998643
|
| >2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.61 E-value=0.48 Score=49.57 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=44.7
Q ss_pred cceeecccCeEEEEEEeCCCceEEEEecCCCCC---Cc-h-HHhHHHHHHHHHHHH-hcCCCCeeEEEEEEEeCCceEEE
Q 042735 426 KYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLP---SD-Q-IADQKEFFAEIEALT-KIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~---~~-~-~~~~~~~~~E~~~l~-~l~H~niv~~~g~~~~~~~~~lv 499 (667)
.+.+|.|..+.||++.. ++..++||....... .. . ......+..|+..+. ...+..+.+++++. .+..++|
T Consensus 39 i~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~lv 115 (420)
T 2pyw_A 39 IKEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALIG 115 (420)
T ss_dssp EEECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEEE
T ss_pred EEEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEEE
Confidence 34689999999999965 456788994321110 00 0 001223444443322 22334566777665 5677999
Q ss_pred EEec-CC
Q 042735 500 YEYL-KR 505 (667)
Q Consensus 500 ~ey~-~~ 505 (667)
|||+ ++
T Consensus 116 ~e~l~~g 122 (420)
T 2pyw_A 116 MRYLEPP 122 (420)
T ss_dssp ECCCCTT
T ss_pred EeecCCc
Confidence 9999 76
|
| >2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A* | Back alignment and structure |
|---|
Probab=89.85 E-value=0.3 Score=50.70 Aligned_cols=79 Identities=14% Similarity=0.071 Sum_probs=48.5
Q ss_pred cceeecccCeEEEEEEeC-CCceEEEEecCCCCC-Cch--HHhHHHHHHHHHHHHhcCC--CC-eeEEEEEEEeCCceEE
Q 042735 426 KYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLP-SDQ--IADQKEFFAEIEALTKIRH--RN-IVKFYGFCSHARHSIL 498 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~-~~~--~~~~~~~~~E~~~l~~l~H--~n-iv~~~g~~~~~~~~~l 498 (667)
.+.+|.|.++.||++... ++..++||....... ... ......+.+|++++..+.+ |. +.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 346899999999999754 457799997643211 000 0112346778888887742 33 3455544 4556789
Q ss_pred EEEecCCC
Q 042735 499 IYEYLKRG 506 (667)
Q Consensus 499 v~ey~~~g 506 (667)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999863
|
| >2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6 | Back alignment and structure |
|---|
Probab=88.08 E-value=3.3 Score=41.09 Aligned_cols=91 Identities=9% Similarity=0.092 Sum_probs=51.5
Q ss_pred CcCHHHHHHHHcCCcCc-----ceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-----
Q 042735 410 KFDYVEIIRAINDFDAK-----YCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR----- 479 (667)
Q Consensus 410 ~~~~~~~~~~~~~f~~~-----~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~----- 479 (667)
.++.+++......|... +.|+.|....+|+....++ .+++|....... ...+..|++++..+.
T Consensus 6 ~~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~~------~~~l~~e~~~l~~L~~~g~~ 78 (322)
T 2ppq_A 6 DITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRVE------KNDLPFFLGLMQHLAAKGLS 78 (322)
T ss_dssp CCCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC---------CCHHHHHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCCC------HHHHHHHHHHHHHHHHCCCC
Confidence 35666777777767652 2366788889999987666 577888764211 123445666666553
Q ss_pred CCCeeEEE-E--EEEeCCceEEEEEecCCCC
Q 042735 480 HRNIVKFY-G--FCSHARHSILIYEYLKRGS 507 (667)
Q Consensus 480 H~niv~~~-g--~~~~~~~~~lv~ey~~~g~ 507 (667)
-|.++... | +....+..+++|||++|..
T Consensus 79 vP~~~~~~~g~~~~~~~g~~~~l~~~l~G~~ 109 (322)
T 2ppq_A 79 CPLPLPRKDGELLGELSGRPAALISFLEGMW 109 (322)
T ss_dssp CCCBCCBTTCCSCEEETTEEEEEEECCCCBC
T ss_pred CCcccCCCCCCEEEEECCEEEEEEEeCCCcC
Confidence 23333210 1 1122356789999999864
|
| >3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A* | Back alignment and structure |
|---|
Probab=87.33 E-value=0.57 Score=48.22 Aligned_cols=73 Identities=15% Similarity=0.283 Sum_probs=43.3
Q ss_pred ceeecccCeEEEEEEeCC--------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeCCceE
Q 042735 427 YCIGSGRHGSVYRAELPS--------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~~--------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~~~~~ 497 (667)
+.+..|....+|++...+ +..+.+|+..... .....+.+|.++++.+. +.-..++++++.+ .
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~-----~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g 126 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL-----QGVDSLVLESVMFAILAERSLGPQLYGVFPE----G 126 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC--------CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----E
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCcc-----chHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----c
Confidence 346668888899998753 4568888753211 12234668998887775 3334566776643 2
Q ss_pred EEEEecCCCCh
Q 042735 498 LIYEYLKRGSL 508 (667)
Q Consensus 498 lv~ey~~~g~L 508 (667)
+||||++|..+
T Consensus 127 ~v~e~i~G~~l 137 (379)
T 3feg_A 127 RLEQYIPSRPL 137 (379)
T ss_dssp EEEECCSEEEC
T ss_pred cEEEEecCccC
Confidence 89999997654
|
| >3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=85.12 E-value=0.91 Score=44.91 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=42.4
Q ss_pred CcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCe-eEEEEEEEeCCceEEEEEec
Q 042735 425 AKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI-VKFYGFCSHARHSILIYEYL 503 (667)
Q Consensus 425 ~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~ni-v~~~g~~~~~~~~~lv~ey~ 503 (667)
..+.|+.|....+|+. ..+.+|......... ....+|+++++.+....+ .+++++ +.+.-++|+||+
T Consensus 22 ~i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~~-----~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i 89 (301)
T 3dxq_A 22 GPLERLGGLTNLVFRA-----GDLCLRIPGKGTEEY-----INRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYI 89 (301)
T ss_dssp SCEEEESCSSEEEEEE-----TTEEEEEECC----C-----CCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECC
T ss_pred ceeEcCCcccccccee-----eeEEEECCCCCccce-----eCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeec
Confidence 3567899999999999 457888765421110 012357766665542122 355544 344467899999
Q ss_pred -CCCCh
Q 042735 504 -KRGSL 508 (667)
Q Consensus 504 -~~g~L 508 (667)
++.++
T Consensus 90 ~~g~~l 95 (301)
T 3dxq_A 90 AGAQTM 95 (301)
T ss_dssp TTCEEC
T ss_pred CCCccC
Confidence 55433
|
| >3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A | Back alignment and structure |
|---|
Probab=81.11 E-value=0.16 Score=54.07 Aligned_cols=57 Identities=7% Similarity=-0.092 Sum_probs=15.0
Q ss_pred CeEEEEEEeCC-CceEEE------EecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe
Q 042735 434 HGSVYRAELPS-KEFLAV------KKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH 492 (667)
Q Consensus 434 ~g~vy~~~~~~-~~~~av------k~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~ 492 (667)
||.||+|.+.. ...||| |....... .......|.+|+.++...+|||+++.+++...
T Consensus 152 fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~--~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~ 215 (463)
T 3cxl_A 152 YTTLNREPAYKKHMPVLKETHDERDSTGQDGV--SEKRLTSLVRRATLKENEQIPKYEKIHNFKVH 215 (463)
T ss_dssp BCCC---------CCBGGGC-------------------------------------CBCCCEEEE
T ss_pred chhhhcccccccCCchhhhhccCccccccccc--cccccccccccccccccccccccCCCcceEEe
Confidence 99999998854 357888 65443211 12223568999999999999999999888754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 667 | ||||
| d1uwha_ | 276 | d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) | 1e-41 | |
| d1k2pa_ | 258 | d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum | 9e-39 | |
| d1sm2a_ | 263 | d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu | 3e-38 | |
| d1qpca_ | 272 | d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom | 2e-36 | |
| d1jpaa_ | 299 | d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou | 7e-36 | |
| d1opja_ | 287 | d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou | 1e-35 | |
| d1fmka3 | 285 | d.144.1.7 (A:249-533) c-src tyrosine kinase {Human | 2e-34 | |
| d1xbba_ | 277 | d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human | 3e-34 | |
| d1byga_ | 262 | d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) | 4e-34 | |
| d1u5ra_ | 309 | d.144.1.7 (A:) Serine/threonine protein kinase TAO | 4e-34 | |
| d2java1 | 269 | d.144.1.7 (A:3-271) Serine/threonine-protein kinas | 4e-34 | |
| d1vjya_ | 303 | d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human | 6e-34 | |
| d1yhwa1 | 293 | d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [ | 9e-34 | |
| d1u59a_ | 285 | d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum | 1e-33 | |
| d1s9ja_ | 322 | d.144.1.7 (A:) Dual specificity mitogen-activated | 2e-33 | |
| d1mqba_ | 283 | d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum | 2e-33 | |
| d1nvra_ | 271 | d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 { | 4e-32 | |
| d1t4ha_ | 270 | d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa | 5e-32 | |
| d2j4za1 | 263 | d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur | 7e-32 | |
| d1r0pa_ | 311 | d.144.1.7 (A:) Hepatocyte growth factor receptor, | 7e-32 | |
| d1fvra_ | 309 | d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [ | 3e-31 | |
| d2jfla1 | 288 | d.144.1.7 (A:21-308) STE20-like serine/threonine-p | 3e-31 | |
| d1u46a_ | 273 | d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum | 1e-30 | |
| d1lufa_ | 301 | d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n | 3e-30 | |
| d1koaa2 | 350 | d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C | 3e-30 | |
| d1mp8a_ | 273 | d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma | 8e-30 | |
| d1xkka_ | 317 | d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb- | 1e-29 | |
| d1a06a_ | 307 | d.144.1.7 (A:) Calmodulin-dependent protein kinase | 1e-29 | |
| d1koba_ | 352 | d.144.1.7 (A:) Twitchin, kinase domain {California | 1e-28 | |
| d1xjda_ | 320 | d.144.1.7 (A:) Protein kinase C, theta type {Human | 1e-28 | |
| d1rjba_ | 325 | d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s | 2e-28 | |
| d1t46a_ | 311 | d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens | 2e-28 | |
| d1uu3a_ | 288 | d.144.1.7 (A:) 3-phosphoinositide dependent protei | 6e-28 | |
| d1jksa_ | 293 | d.144.1.7 (A:) Death-associated protein kinase, Da | 1e-27 | |
| d1p4oa_ | 308 | d.144.1.7 (A:) Insulin-like growth factor 1 recept | 2e-27 | |
| d1tkia_ | 321 | d.144.1.7 (A:) Titin, kinase domain {Human (Homo s | 3e-27 | |
| d1o6ya_ | 277 | d.144.1.7 (A:) Mycobacterial protein kinase PknB, | 1e-26 | |
| d1phka_ | 277 | d.144.1.7 (A:) gamma-subunit of glycogen phosphory | 8e-26 | |
| d1ob3a_ | 286 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod | 3e-25 | |
| d1omwa3 | 364 | d.144.1.7 (A:186-549) G-protein coupled receptor k | 3e-25 | |
| d1ua2a_ | 299 | d.144.1.7 (A:) Cell division protein kinase 7, CDK | 3e-25 | |
| d1fota_ | 316 | d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni | 8e-25 | |
| d1ckia_ | 299 | d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n | 2e-24 | |
| d1o6la_ | 337 | d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap | 4e-24 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-24 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-16 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-13 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 8e-10 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 9e-10 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-05 | |
| d1xwsa_ | 273 | d.144.1.7 (A:) Proto-oncogene serine/threonine-pro | 7e-24 | |
| d1fgka_ | 299 | d.144.1.7 (A:) Fibroblast growth factor receptor 1 | 1e-23 | |
| d1gz8a_ | 298 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H | 1e-22 | |
| d1vzoa_ | 322 | d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5 | 3e-22 | |
| d1ywna1 | 299 | d.144.1.7 (A:818-1166) Vascular endothelial growth | 5e-22 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 5e-22 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-10 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-09 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-05 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-05 | |
| d1csna_ | 293 | d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast | 9e-22 | |
| d1pmea_ | 345 | d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien | 1e-21 | |
| d3blha1 | 318 | d.144.1.7 (A:8-325) Cell division protein kinase 9 | 3e-21 | |
| d1unla_ | 292 | d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H | 3e-21 | |
| d2ozaa1 | 335 | d.144.1.7 (A:51-385) MAP kinase activated protein | 1e-20 | |
| d3bqca1 | 328 | d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu | 3e-20 | |
| d1blxa_ | 305 | d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H | 7e-20 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-19 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-18 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-14 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 8e-06 | |
| d1cm8a_ | 346 | d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s | 7e-19 | |
| d1rdqe_ | 350 | d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni | 2e-18 | |
| d1q5ka_ | 350 | d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs | 3e-18 | |
| d2gfsa1 | 348 | d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa | 2e-17 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-17 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-14 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-10 | |
| d2b1pa1 | 355 | d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3 | 1e-14 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 5e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 9e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.001 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 1e-09 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-07 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-09 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-09 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-08 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 5e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-05 | |
| d1zara2 | 191 | d.144.1.9 (A:91-281) Rio2 serine protein kinase C- | 4e-09 | |
| d1q8ya_ | 362 | d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces | 2e-08 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-08 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 7e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 7e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 1e-05 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 3e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 2e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 6e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.001 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 5e-05 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.002 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 2e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 5e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.001 | |
| d1m9la_ | 198 | c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree | 7e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 7e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.002 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 0.001 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 0.003 |
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 150 bits (380), Expect = 1e-41
Identities = 63/277 (22%), Positives = 105/277 (37%), Gaps = 49/277 (17%)
Query: 415 EIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEA 474
EI IGSG G+VY+ + +AVK N P+ Q + F E+
Sbjct: 4 EIPD--GQITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQ--QLQAFKNEVGV 57
Query: 475 LTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------- 521
L K RH NI+ F G+ + ++ ++ + SL +L E+
Sbjct: 58 LRKTRHVNILLFMGYSTA-PQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQG 116
Query: 522 ------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD 567
D+ S N+ L + + DFG+A S + + L G+ ++AP+
Sbjct: 117 MDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPE 176
Query: 568 ---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618
Y + DVY+F ++ E++ G+ P S+I +I M L P L
Sbjct: 177 VIRMQDKNPYSFQSDVYAFGIVLYELMTGQLP---YSNINNRDQIIFMVGRGYLSPDLSK 233
Query: 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ + +M CL + RP I +
Sbjct: 234 VRSNCPKAMKRLMA---ECLKKKRDERPLFPQILASI 267
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 141 bits (357), Expect = 9e-39
Identities = 54/268 (20%), Positives = 100/268 (37%), Gaps = 47/268 (17%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
D +G+G+ G V + + +A+K + + EF E + + + H
Sbjct: 4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIK-----EGSMSEDEFIEEAKVMMNLSH 58
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND-----------------AAAEEL-- 521
+V+ YG C+ R +I EY+ G L L A E L
Sbjct: 59 EKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLES 118
Query: 522 ------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS-ALVGTYRYVAPD------Y 568
D++++N L++ + VSDFG+++++ D S R+ P+ +
Sbjct: 119 KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKF 178
Query: 569 RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
K D+++F VL E+ P N E + L P + +
Sbjct: 179 SSKSDIWAFGVLMWEIYSLGKM--------PYERFTNSETAEHIAQGLRLYRPHLASE-- 228
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQLL 656
+ + +SC + RPT + + +L
Sbjct: 229 KVYTIMYSCWHEKADERPTFKILLSNIL 256
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Score = 140 bits (354), Expect = 3e-38
Identities = 56/267 (20%), Positives = 100/267 (37%), Gaps = 47/267 (17%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
++ IGSG+ G V+ +K+ +A+K + +++F E E + K+ H
Sbjct: 5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIR-----EGAMSEEDFIEEAEVMMKLSH 59
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------- 521
+V+ YG C L++E+++ G L+ L
Sbjct: 60 PKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEE 119
Query: 522 ------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS-ALVGTYRYVAPD------Y 568
D++++N L+ VSDFG+ +F+ D S ++ +P+ Y
Sbjct: 120 ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRY 179
Query: 569 RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
K DV+SF VL EV P + N + E + P +
Sbjct: 180 SSKSDVWSFGVLMWEVFSEGKI--------PYENRSNSEVVEDISTGFRLYKPRLAST-- 229
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQL 655
+ ++ C PE RP + +QL
Sbjct: 230 HVYQIMNHCWKERPEDRPAFSRLLRQL 256
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Score = 135 bits (342), Expect = 2e-36
Identities = 51/269 (18%), Positives = 94/269 (34%), Gaps = 51/269 (18%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
+G+G+ G V+ +AVK F AE + +++H
Sbjct: 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-----QGSMSPDAFLAEANLMKQLQH 67
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-------------------- 520
+ +V+ Y + +I EY++ GSL L + +
Sbjct: 68 QRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE 126
Query: 521 ------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW-SALVGTYRYVAPDYRK--- 570
D+ + N+L+ ++DFG+A+ ++ + ++ AP+
Sbjct: 127 ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGT 186
Query: 571 ---KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD-VQGK 626
K DV+SF +L E++ P P + N + + L+ PD +
Sbjct: 187 FTIKSDVWSFGILLTEIVTHGRI--------PYPGMTNPEVIQNLERGYRMVRPDNCPEE 238
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQL 655
L +M C PE RPT + L
Sbjct: 239 LYQLMR---LCWKERPEDRPTFDYLRSVL 264
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 134 bits (339), Expect = 7e-36
Identities = 62/296 (20%), Positives = 112/296 (37%), Gaps = 66/296 (22%)
Query: 411 FDYVEIIRAINDFDAKY---------CIGSGRHGSVYRAELPS----KEFLAVKKFNSPL 457
F + + A+ +F + IG+G G V L + F+A+K S
Sbjct: 7 FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66
Query: 458 PSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL--------- 508
Q ++F +E + + H N++ G + + ++I E+++ GSL
Sbjct: 67 TEKQR---RDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDG 123
Query: 509 ------ATNLSNDAAA----------EELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552
+ AA D++++N+L++ VSDFG+++FL+ D+S
Sbjct: 124 QFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTS 183
Query: 553 NWS-----ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSP 601
+ + R+ AP+ + DV+S+ ++ EV+ P
Sbjct: 184 DPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGER--------PYW 235
Query: 602 SVINMRLDEML--DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ N + + D RLPPP D L +M C RP I L
Sbjct: 236 DMTNQDVINAIEQDYRLPPP-MDCPSALHQLML---DCWQKDRNHRPKFGQIVNTL 287
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 133 bits (336), Expect = 1e-35
Identities = 61/279 (21%), Positives = 112/279 (40%), Gaps = 51/279 (18%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFF 469
+D E+ R D K+ +G G++G VY +AVK + + +EF
Sbjct: 9 YDKWEMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-----EDTMEVEEFL 61
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND-------------- 515
E + +I+H N+V+ G C+ +I E++ G+L L
Sbjct: 62 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMA 121
Query: 516 ----AAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN-WSALVGTYR 562
+A E L D++++N L+ H V+DFG+++ + D+ + +
Sbjct: 122 TQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIK 181
Query: 563 YVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRL 616
+ AP+ + K DV++F VL E+ P P + ++ E+L+
Sbjct: 182 WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMS--------PYPGIDLSQVYELLEKDY 233
Query: 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P+ G + E+ +C +P RP+ I Q
Sbjct: 234 RMERPE--GCPEKVYELMRACWQWNPSDRPSFAEIHQAF 270
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 130 bits (328), Expect = 2e-34
Identities = 55/275 (20%), Positives = 100/275 (36%), Gaps = 53/275 (19%)
Query: 415 EIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEA 474
EI R + +G G G V+ +A+K + F E +
Sbjct: 13 EIPR--ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLK-----PGTMSPEAFLQEAQV 65
Query: 475 LTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND---------------AAAE 519
+ K+RH +V+ Y S ++ EY+ +GSL L + A
Sbjct: 66 MKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIAS 124
Query: 520 EL-----------DISSKNVLLDLEHKAHVSDFGIAKFLKPD-SSNWSALVGTYRYVAPD 567
+ D+ + N+L+ V+DFG+A+ ++ + + ++ AP+
Sbjct: 125 GMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPE 184
Query: 568 ------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621
+ K DV+SF +L E+ P P ++N + + ++ P P
Sbjct: 185 AALYGRFTIKSDVWSFGILLTELTTKGRV--------PYPGMVNREVLDQVERGYRMPCP 236
Query: 622 -DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ L +M C PE RPT + + L
Sbjct: 237 PECPESLHDLMC---QCWRKEPEERPTFEYLQAFL 268
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Score = 129 bits (325), Expect = 3e-34
Identities = 57/264 (21%), Positives = 101/264 (38%), Gaps = 51/264 (19%)
Query: 429 IGSGRHGSVYRAELPSK---EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
+GSG G+V + K + +AVK + ++ A + E AE + ++ + IV+
Sbjct: 15 LGSGNFGTVKKGYYQMKKVVKTVAVKILKNE--ANDPALKDELLAEANVMQQLDNPYIVR 72
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------------------L 521
G C +L+ E + G L L + ++
Sbjct: 73 MIGICEA-ESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHR 131
Query: 522 DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA---LVGTYRYVAP------DYRKKC 572
D++++NVLL +H A +SDFG++K L+ D + + A ++ AP + K
Sbjct: 132 DLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKS 191
Query: 573 DVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP-DVQGKLISIM 631
DV+SF VL E P + + ML+ P ++ +M
Sbjct: 192 DVWSFGVLMWEAFSYGQK--------PYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLM 243
Query: 632 EVAFSCLDVSPESRPTMQTITQQL 655
C E+RP + +L
Sbjct: 244 N---LCWTYDVENRPGFAAVELRL 264
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 128 bits (324), Expect = 4e-34
Identities = 60/269 (22%), Positives = 105/269 (39%), Gaps = 53/269 (19%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+ + IG G G V + + AVK + A + F AE +T++R
Sbjct: 6 MKELKLLQTIGKGEFGDVMLGDYRGNKV-AVKCIKND------ATAQAFLAEASVMTQLR 58
Query: 480 HRNIVKFYGFCSHARHSI-LIYEYLKRGSLATNLSND------------------AAAEE 520
H N+V+ G + + ++ EY+ +GSL L + A E
Sbjct: 59 HSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY 118
Query: 521 L--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
L D++++NVL+ ++ A VSDFG+ K SS ++ AP+
Sbjct: 119 LEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEA---SSTQDTGKLPVKWTAPEALREK 175
Query: 568 -YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
+ K DV+SF +L E+ P P + + ++ +PD
Sbjct: 176 KFSTKSDVWSFGILLWEIYSFGRV--------PYPRIPLKDVVPRVEKGYKMDAPDGCPP 227
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQL 655
++ EV +C + RP+ + +QL
Sbjct: 228 --AVYEVMKNCWHLDAAMRPSFLQLREQL 254
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 130 bits (327), Expect = 4e-34
Identities = 54/257 (21%), Positives = 98/257 (38%), Gaps = 49/257 (19%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G G+VY A + + E +A+KK + ++ E+ L K+RH N +++
Sbjct: 23 IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSN-EKWQDIIKEVRFLQKLRHPNTIQYR 81
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------DI 523
G + L+ EY + + +E+ D+
Sbjct: 82 GCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDV 141
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD---------YRKKCDV 574
+ N+LL + DFG A + P +S VGT ++AP+ Y K DV
Sbjct: 142 KAGNILLSEPGLVKLGDFGSASIMAPANS----FVGTPYWMAPEVILAMDEGQYDGKVDV 197
Query: 575 YSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVA 634
+S + +E+ + K P L + + ++ + S + ++
Sbjct: 198 WSLGITCIELAERKPP-------LFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVD-- 248
Query: 635 FSCLDVSPESRPTMQTI 651
SCL P+ RPT + +
Sbjct: 249 -SCLQKIPQDRPTSEVL 264
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 128 bits (324), Expect = 4e-34
Identities = 53/274 (19%), Positives = 108/274 (39%), Gaps = 55/274 (20%)
Query: 422 DFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
D++ Y IG+G +G + + L K+ + ++ +++ +E+ L +++H
Sbjct: 5 DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEA--EKQMLVSEVNLLRELKH 62
Query: 481 RNIVKFYGFCSHARHSIL--IYEYLKRGSLATNLSNDAAAEEL----------------- 521
NIV++Y ++ L + EY + G LA+ ++ +
Sbjct: 63 PNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLAL 122
Query: 522 ----------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVA 565
D+ NV LD + + DFG+A+ L D+S A VGT Y++
Sbjct: 123 KECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMS 182
Query: 566 PD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPP 619
P+ Y +K D++S L E+ P + S + ++ + +
Sbjct: 183 PEQMNRMSYNEKSDIWSLGCLLYELCALMPP-------FTAFSQKEL-AGKIREGKFRRI 234
Query: 620 SPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
+L I+ L++ RP+++ I +
Sbjct: 235 PYRYSDELNEIIT---RMLNLKDYHRPSVEEILE 265
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 129 bits (325), Expect = 6e-34
Identities = 62/290 (21%), Positives = 103/290 (35%), Gaps = 69/290 (23%)
Query: 428 CIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG GR G V+R + +E AVK F+S + AEI +RH NI+ F
Sbjct: 10 SIGKGRFGEVWRGKWRGEEV-AVKIFSS-----REERSWFREAEIYQTVMLRHENILGFI 63
Query: 488 GFCSHARHSI----LIYEYLKRGSLATNLSNDAAAEEL---------------------- 521
+ + L+ +Y + GSL L+ E
Sbjct: 64 AADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGT 123
Query: 522 ---------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA----LVGTYRYVAP-- 566
D+ SKN+L+ ++D G+A + VGT RY+AP
Sbjct: 124 QGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEV 183
Query: 567 ----------DYRKKCDVYSFRVLALEVIKGKHPRG--------FVSSILPSPSVINMR- 607
+ K+ D+Y+ ++ E+ + G + + PSV MR
Sbjct: 184 LDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRK 243
Query: 608 --LDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
++ L P +P + L + ++ C + +R T I + L
Sbjct: 244 VVCEQKLRPNIPNRWQSCEA-LRVMAKIMRECWYANGAARLTALRIKKTL 292
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 128 bits (323), Expect = 9e-34
Identities = 62/271 (22%), Positives = 114/271 (42%), Gaps = 47/271 (17%)
Query: 417 IRAINDFDAKY----CIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAE 471
I ++ D KY IG G G+VY A ++ + + +A+++ N Q ++ E
Sbjct: 12 IVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNL----QQQPKKELIINE 67
Query: 472 IEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL---------- 521
I + + ++ NIV + ++ EYL GSL ++ E
Sbjct: 68 ILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQ 127
Query: 522 -------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD- 567
DI S N+LL ++ ++DFG + P+ S S +VGT ++AP+
Sbjct: 128 ALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEV 187
Query: 568 -----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622
Y K D++S ++A+E+I+G+ P +++ +P + P L P
Sbjct: 188 VTRKAYGPKVDIWSLGIMAIEMIEGEPP--YLNE---NPLRALYLIATNGTPELQNP-EK 241
Query: 623 VQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
+ + CLD+ E R + + + Q
Sbjct: 242 LSAIFRDFLN---RCLDMDVEKRGSAKELLQ 269
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Score = 127 bits (321), Expect = 1e-33
Identities = 57/265 (21%), Positives = 99/265 (37%), Gaps = 53/265 (20%)
Query: 429 IGSGRHGSVYRAEL---PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
+G G GSV + + +A+K + AD +E E + + ++ + IV+
Sbjct: 17 LGCGNFGSVRQGVYRMRKKQIDVAIKVLK---QGTEKADTEEMMREAQIMHQLDNPYIVR 73
Query: 486 FYGFCSHARHSILIYEYLKRGSLAT-------NLSNDAAAEEL----------------- 521
G C A +L+ E G L + AE L
Sbjct: 74 LIGVC-QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVH 132
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW---SALVGTYRYVAPDYRK------K 571
D++++NVLL H A +SDFG++K L D S + SA ++ AP+ +
Sbjct: 133 RDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSR 192
Query: 572 CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP-DVQGKLISI 630
DV+S+ V E + P + + ++ P + +L ++
Sbjct: 193 SDVWSYGVTMWEALSYGQK--------PYKKMKGPEVMAFIEQGKRMECPPECPPELYAL 244
Query: 631 MEVAFSCLDVSPESRPTMQTITQQL 655
M C E RP T+ Q++
Sbjct: 245 MS---DCWIYKWEDRPDFLTVEQRM 266
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 128 bits (323), Expect = 2e-33
Identities = 58/297 (19%), Positives = 106/297 (35%), Gaps = 69/297 (23%)
Query: 421 NDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+DF+ +G+G G V++ PS +A K + + A + + E++ L +
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIH---LEIKPAIRNQIIRELQVLHECN 62
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------------- 520
IV FYG + E++ GSL L E
Sbjct: 63 SPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLRE 122
Query: 521 ------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------Y 568
D+ N+L++ + + DFG++ L +N + VGT Y++P+ Y
Sbjct: 123 KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN--SFVGTRSYMSPERLQGTHY 180
Query: 569 RKKCDVYSFRVLALEVIKGKHP------------------------------RGFVSSIL 598
+ D++S + +E+ G++P G S
Sbjct: 181 SVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSY 240
Query: 599 PSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF--SCLDVSPESRPTMQTITQ 653
S M + E+LD + P P + + S+ F CL +P R ++ +
Sbjct: 241 GMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV 297
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 127 bits (319), Expect = 2e-33
Identities = 54/274 (19%), Positives = 102/274 (37%), Gaps = 52/274 (18%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPS-----KEFLAVKKFNSPLPSDQIADQKEFFAEIEAL 475
+ + IG+G G VY+ L + + +A+K + Q + +F E +
Sbjct: 7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQ---RVDFLGEAGIM 63
Query: 476 TKIRHRNIVKFYGFCSHARHSILIYEYLKRGSL---------------ATNLSNDAAAEE 520
+ H NI++ G S + ++I EY++ G+L + AA
Sbjct: 64 GQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGM 123
Query: 521 ----------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW---SALVGTYRYVAPD 567
D++++N+L++ VSDFG+++ L+ D S R+ AP+
Sbjct: 124 KYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPE 183
Query: 568 Y------RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621
DV+SF ++ EV+ P + N + + ++ P+P
Sbjct: 184 AISYRKFTSASDVWSFGIVMWEVMTYGER--------PYWELSNHEVMKAINDGFRLPTP 235
Query: 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+I ++ C RP I L
Sbjct: 236 M--DCPSAIYQLMMQCWQQERARRPKFADIVSIL 267
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 123 bits (309), Expect = 4e-32
Identities = 58/266 (21%), Positives = 97/266 (36%), Gaps = 46/266 (17%)
Query: 420 INDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ D+D +G G +G V A ++E +AVK + + + EI +
Sbjct: 4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVD---MKRAVDCPENIKKEICINKML 60
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND----------------AAAEEL- 521
H N+VKFYG L EY G L + D A L
Sbjct: 61 NHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLH 120
Query: 522 -------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD----- 567
DI +N+LLD +SDFG+A + ++ + + GT YVAP+
Sbjct: 121 GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRR 180
Query: 568 --YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625
+ + DV+S ++ ++ G+ P S D P +
Sbjct: 181 EFHAEPVDVWSCGIVLTAMLAGELPWDQPSDS------CQEYSDWKEKKTYLNPWKKIDS 234
Query: 626 KLISIMEVAFSCLDVSPESRPTMQTI 651
++++ L +P +R T+ I
Sbjct: 235 APLALLH---KILVENPSARITIPDI 257
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 123 bits (309), Expect = 5e-32
Identities = 44/260 (16%), Positives = 92/260 (35%), Gaps = 50/260 (19%)
Query: 429 IGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +VY+ + +A + + +++ F E E L ++H NIV+FY
Sbjct: 17 IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKS--ERQRFKEEAEMLKGLQHPNIVRFY 74
Query: 488 GFCSHA----RHSILIYEYLKRGSLATNLSNDAAAEE----------------------- 520
+ +L+ E + G+L T L +
Sbjct: 75 DSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPP 134
Query: 521 ---LDISSKNVLLDLEH-KAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP-----DYRKK 571
D+ N+ + + D G+A + + A++GT ++AP Y +
Sbjct: 135 IIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAK--AVIGTPEFMAPEMYEEKYDES 192
Query: 572 CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIM 631
DVY+F + LE+ ++P S + + + + +
Sbjct: 193 VDVYAFGMCMLEMATSEYP---YSECQNAAQIYRRVTSGVKPASFDKVAIP------EVK 243
Query: 632 EVAFSCLDVSPESRPTMQTI 651
E+ C+ + + R +++ +
Sbjct: 244 EIIEGCIRQNKDERYSIKDL 263
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 122 bits (307), Expect = 7e-32
Identities = 60/266 (22%), Positives = 102/266 (38%), Gaps = 46/266 (17%)
Query: 419 AINDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK 477
A+ DF+ +G G+ G+VY A SK LA+K + + E+E +
Sbjct: 4 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKA-GVEHQLRREVEIQSH 62
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL---------------- 521
+RH NI++ YG+ A LI EY G++ L + +E
Sbjct: 63 LRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYC 122
Query: 522 --------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
DI +N+LL + ++DFG + SS + L GT Y+ P+
Sbjct: 123 HSKRVIHRDIKPENLLLGSAGELKIADFGWSVHA--PSSRRTTLCGTLDYLPPEMIEGRM 180
Query: 568 YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627
+ +K D++S VL E + GK P + + + P V
Sbjct: 181 HDEKVDLWSLGVLCYEFLVGKPP-------FEANTYQET-YKRISRVEFTFP-DFVTEGA 231
Query: 628 ISIMEVAFSCLDVSPESRPTMQTITQ 653
++ L +P RP ++ + +
Sbjct: 232 RDLIS---RLLKHNPSQRPMLREVLE 254
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Score = 123 bits (310), Expect = 7e-32
Identities = 56/267 (20%), Positives = 94/267 (35%), Gaps = 53/267 (19%)
Query: 429 IGSGRHGSVYRAELP----SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIV 484
IG G G VY L K AVK N I + +F E + H N++
Sbjct: 35 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLN---RITDIGEVSQFLTEGIIMKDFSHPNVL 91
Query: 485 KFYGFCSHARHSI-LIYEYLKRGSLATNLSNDAAAEEL---------------------- 521
G C + S ++ Y+K G L + N+ +
Sbjct: 92 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKF 151
Query: 522 ---DISSKNVLLDLEHKAHVSDFGIAKFLKPDS----SNWSALVGTYRYVAPDYRK---- 570
D++++N +LD + V+DFG+A+ + N + +++A + +
Sbjct: 152 VHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKF 211
Query: 571 --KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
K DV+SF VL E++ P P P V + L P+
Sbjct: 212 TTKSDVWSFGVLLWELMTRGAP--------PYPDVNTFDITVYLLQGRRLLQPEYCPD-- 261
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQL 655
+ EV C E RP+ + ++
Sbjct: 262 PLYEVMLKCWHPKAEMRPSFSELVSRI 288
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 121 bits (305), Expect = 3e-31
Identities = 57/287 (19%), Positives = 96/287 (33%), Gaps = 66/287 (22%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELPS---KEFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
ND + IG G G V +A + + A+K+ D D ++F E+E L
Sbjct: 9 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKD---DHRDFAGELEVLC 65
Query: 477 KI-RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------------- 521
K+ H NI+ G C H + L EY G+L L E
Sbjct: 66 KLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLS 125
Query: 522 --------------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555
D++++N+L+ + A ++DFG+++ +
Sbjct: 126 SQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTM 185
Query: 556 ALVGTYRYVAPDYRK------KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLD 609
R++A + DV+S+ VL E++ P + L
Sbjct: 186 G-RLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGT--------PYCGMTCAELY 236
Query: 610 EMLDPRLPPPSP-DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
E L P + ++ +M C P RP+ I L
Sbjct: 237 EKLPQGYRLEKPLNCDDEVYDLMR---QCWREKPYERPSFAQILVSL 280
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Score = 121 bits (304), Expect = 3e-31
Identities = 50/281 (17%), Positives = 106/281 (37%), Gaps = 53/281 (18%)
Query: 413 YVEIIRAIN---DFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEF 468
Y + R +N ++ +G G G VY+A+ + A K + + + +++
Sbjct: 1 YEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKV----IDTKSEEELEDY 56
Query: 469 FAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND------------- 515
EI+ L H NIVK + + ++ E+ G++ +
Sbjct: 57 MVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVC 116
Query: 516 ----AAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRY 563
A L D+ + N+L L+ ++DFG++ + +GT +
Sbjct: 117 KQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYW 176
Query: 564 VAPD-----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML 612
+AP+ Y K DV+S + +E+ + + P + +P + +++ +
Sbjct: 177 MAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHEL-----NPMRVLLKIAKSE 231
Query: 613 DPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
P L P ++ CL+ + ++R T + Q
Sbjct: 232 PPTLAQP-SRWSSNFKDFLK---KCLEKNVDARWTTSQLLQ 268
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 119 bits (298), Expect = 1e-30
Identities = 50/276 (18%), Positives = 89/276 (32%), Gaps = 53/276 (19%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPSK----EFLAVKKFNSPLPSDQIADQKEFFAEIEALT 476
D +G G G V R E + +AVK + S +F E+ A+
Sbjct: 8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQP-EAMDDFIREVNAMH 66
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELD-------------- 522
+ HRN+++ YG ++ E GSL L L
Sbjct: 67 SLDHRNLIRLYGVVLT-PPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMG 125
Query: 523 -----------ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW---SALVGTYRYVAPD- 567
++++N+LL + DFG+ + L + ++ + + AP+
Sbjct: 126 YLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPES 185
Query: 568 -----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEML--DPRLPPPS 620
+ D + F V E+ P + ++ + + P
Sbjct: 186 LKTRTFSHASDTWMFGVTLWEMFTYGQE--------PWIGLNGSQILHKIDKEGERLPRP 237
Query: 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656
D + ++M C PE RPT + LL
Sbjct: 238 EDCPQDIYNVMV---QCWAHKPEDRPTFVALRDFLL 270
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 119 bits (298), Expect = 3e-30
Identities = 53/309 (17%), Positives = 104/309 (33%), Gaps = 79/309 (25%)
Query: 410 KFDYVEIIRAINDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIA 463
K +E R N+ + IG G G V++A P +AVK +D
Sbjct: 4 KLLSLEYPR--NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADM-- 59
Query: 464 DQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-- 521
Q +F E + + + NIVK G C+ + L++EY+ G L L + +
Sbjct: 60 -QADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSL 118
Query: 522 ----------------------------------------------DISSKNVLLDLEHK 535
D++++N L+
Sbjct: 119 SHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMV 178
Query: 536 AHVSDFGIAKFLKPDSSNWS--ALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKG 587
++DFG+++ + + R++ P+ Y + DV+++ V+ E+
Sbjct: 179 VKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSY 238
Query: 588 KHPRGFVSSILPSPSVINMR-LDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRP 646
P + + + + D + + +L ++M C P RP
Sbjct: 239 GLQ--------PYYGMAHEEVIYYVRDGNILACPENCPLELYNLMR---LCWSKLPADRP 287
Query: 647 TMQTITQQL 655
+ +I + L
Sbjct: 288 SFCSIHRIL 296
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Score = 120 bits (301), Expect = 3e-30
Identities = 48/266 (18%), Positives = 90/266 (33%), Gaps = 47/266 (17%)
Query: 420 INDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
++ +D +G+G G V+R E + A K + + +D++ EI+ ++ +
Sbjct: 25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKF----VMTPHESDKETVRKEIQTMSVL 80
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLAT-------NLSNDAAAE------------ 519
RH +V + ++IYE++ G L +S D A E
Sbjct: 81 RHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHM 140
Query: 520 ------ELDISSKNVLLDLEHKAHV--SDFGIAKFLKPDSSNWSALVGTYRYVAP----- 566
LD+ +N++ + + DFG+ L P S GT + AP
Sbjct: 141 HENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKV-TTGTAEFAAPEVAEG 199
Query: 567 -DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625
D++S VL+ ++ G P F + + +
Sbjct: 200 KPVGYYTDMWSVGVLSYILLSGLSP--FGG---ENDDETLRNVKSCDWNMDDSAFSGISE 254
Query: 626 KLISIMEVAFSCLDVSPESRPTMQTI 651
+ L P +R T+
Sbjct: 255 DGKDFIR---KLLLADPNTRMTIHQA 277
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Score = 116 bits (292), Expect = 8e-30
Identities = 54/278 (19%), Positives = 101/278 (36%), Gaps = 54/278 (19%)
Query: 415 EIIRAINDFDAKYCIGSGRHGSVYRAELPSKE----FLAVKKFNSPLPSDQIADQKEFFA 470
EI R + CIG G+ G V++ S E +A+K + +++F
Sbjct: 3 EIQR--ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCK---NCTSDSVREKFLQ 57
Query: 471 EIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------- 521
E + + H +IVK G + +I E G L + L + +L
Sbjct: 58 EALTMRQFDHPHIVKLIGVITE-NPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQ 116
Query: 522 ----------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-NWSALVGTYRYV 564
DI+++NVL+ + DFG++++++ + S +++
Sbjct: 117 LSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWM 176
Query: 565 APD------YRKKCDVYSFRVLALEVI-KGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617
AP+ + DV+ F V E++ G P + + R++ +P
Sbjct: 177 APESINFRRFTSASDVWMFGVCMWEILMHGVKPFQG-----VKNNDVIGRIENGERLPMP 231
Query: 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P P ++ + C P RP + QL
Sbjct: 232 PNCPP------TLYSLMTKCWAYDPSRRPRFTELKAQL 263
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 117 bits (294), Expect = 1e-29
Identities = 43/279 (15%), Positives = 95/279 (34%), Gaps = 51/279 (18%)
Query: 414 VEIIRAINDFDAKYCIGSGRHGSVYRAELPS-----KEFLAVKKFNSPLPSDQIADQKEF 468
+ I++ +F +GSG G+VY+ K +A+K+ + KE
Sbjct: 3 LRILKE-TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR---EATSPKANKEI 58
Query: 469 FAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-------- 520
E + + + ++ + G C + ++ L +
Sbjct: 59 LDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCV 118
Query: 521 ----------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYR 562
D++++NVL+ ++DFG+AK L + + A +
Sbjct: 119 QIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIK 178
Query: 563 YVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRL 616
++A + Y + DV+S+ V E++ P + + +L+
Sbjct: 179 WMALESILHRIYTHQSDVWSYGVTVWELMTFGSK--------PYDGIPASEISSILEKGE 230
Query: 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
P P + + + C + +SRP + + +
Sbjct: 231 RLPQPPICTI--DVYMIMVKCWMIDADSRPKFRELIIEF 267
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 117 bits (293), Expect = 1e-29
Identities = 57/267 (21%), Positives = 93/267 (34%), Gaps = 46/267 (17%)
Query: 421 NDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+ +D + +G+G V AE +++ +A+K + EI L KI+
Sbjct: 9 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIA---KKALEGKEGSMENEIAVLHKIK 65
Query: 480 HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEELDISS-------------- 525
H NIV H LI + + G L + E D S
Sbjct: 66 HPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHD 125
Query: 526 -------------KNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD----- 567
LD + K +SDFG++K P S + GT YVAP+
Sbjct: 126 LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLST-ACGTPGYVAPEVLAQK 184
Query: 568 -YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
Y K D +S V+A ++ G P F + + + ++ + P D+
Sbjct: 185 PYSKAVDCWSIGVIAYILLCGYPP--FYDE---NDAKLFEQILKAEYEFDSPYWDDISDS 239
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQ 653
+ ++ PE R T + Q
Sbjct: 240 AKDFIR---HLMEKDPEKRFTCEQALQ 263
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Score = 115 bits (289), Expect = 1e-28
Identities = 49/277 (17%), Positives = 91/277 (32%), Gaps = 56/277 (20%)
Query: 411 FDYVEIIRAINDFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFF 469
+DY +I+ +GSG G V+R E + K N+P P D+
Sbjct: 28 YDYYDILE---------ELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDK----YTVK 74
Query: 470 AEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND-------------- 515
EI + ++ H ++ + +LI E+L G L ++ +
Sbjct: 75 NEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMR 134
Query: 516 ---AAAEEL--------DISSKNVLLDLEHKAHV--SDFGIAKFLKPDSSNWSALVGTYR 562
+ + DI +N++ + + + V DFG+A L PD T
Sbjct: 135 QACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVT-TATAE 193
Query: 563 YVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRL 616
+ AP+ D+++ VL ++ G P F +
Sbjct: 194 FAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSP--FAG---EDDLETLQNVKRCDWEFD 248
Query: 617 PPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
V + ++ + L P R T+ +
Sbjct: 249 EDAFSSVSPEAKDFIK---NLLQKEPRKRLTVHDALE 282
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Score = 114 bits (286), Expect = 1e-28
Identities = 49/262 (18%), Positives = 87/262 (33%), Gaps = 45/262 (17%)
Query: 420 INDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTK- 477
I DF +G G G V+ AE + +F A+K + D + E L+
Sbjct: 1 IEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMD-DDVECTMVEKRVLSLA 59
Query: 478 IRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE----------------- 520
H + + + + EYL G L ++ + +
Sbjct: 60 WEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFL 119
Query: 521 -------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
D+ N+LLD + ++DFG+ K + + GT Y+AP+
Sbjct: 120 HSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQK 179
Query: 568 YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627
Y D +SF VL E++ G+ P L + P ++ +
Sbjct: 180 YNHSVDWWSFGVLLYEMLIGQSPF---------HGQDEEELFHSIRMDNPFYPRWLEKEA 230
Query: 628 ISIMEVAFSCLDVSPESRPTMQ 649
++ PE R ++
Sbjct: 231 KDLLV---KLFVREPEKRLGVR 249
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 114 bits (285), Expect = 2e-28
Identities = 56/304 (18%), Positives = 101/304 (33%), Gaps = 78/304 (25%)
Query: 415 EIIRAINDFDAKYCIGSGRHGSVYRAELPS------KEFLAVKKFNSPLPSDQIADQKEF 468
E R + + +GSG G V A +AVK ++++
Sbjct: 33 EFPR--ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLK---EKADSSEREAL 87
Query: 469 FAEIEALTKI-RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------ 521
+E++ +T++ H NIV G C+ + LI+EY G L L +
Sbjct: 88 MSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYE 147
Query: 522 -----------------------------------------DISSKNVLLDLEHKAHVSD 540
D++++NVL+ + D
Sbjct: 148 NQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICD 207
Query: 541 FGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVI-KGKHPR 591
FG+A+ + DS+ +++AP+ Y K DV+S+ +L E+ G +P
Sbjct: 208 FGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNP- 266
Query: 592 GFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
+P + + P + + I + SC RP+ +
Sbjct: 267 ---YPGIPVDANFYKLIQNGFKMDQPFYATE------EIYIIMQSCWAFDSRKRPSFPNL 317
Query: 652 TQQL 655
T L
Sbjct: 318 TSFL 321
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (284), Expect = 2e-28
Identities = 57/298 (19%), Positives = 103/298 (34%), Gaps = 71/298 (23%)
Query: 415 EIIRAINDFDAKYCIGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEF 468
E R N +G+G G V A + +AVK PS + +++
Sbjct: 19 EFPR--NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK---PSAHLTEREAL 73
Query: 469 FAEIEALTKI-RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------ 521
+E++ L+ + H NIV G C+ +++I EY G L L +
Sbjct: 74 MSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPA 133
Query: 522 ------------------------------------DISSKNVLLDLEHKAHVSDFGIAK 545
D++++N+LL + DFG+A+
Sbjct: 134 IMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLAR 193
Query: 546 FLKPDSSNWSA--LVGTYRYVAPDYR------KKCDVYSFRVLALEVIKGKHPRGFVSSI 597
+K DS+ +++AP+ + DV+S+ + E+
Sbjct: 194 DIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSP---YPG 250
Query: 598 LPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+P S + E P +P + ++ +C D P RPT + I Q +
Sbjct: 251 MPVDSKFYKMIKEGFRMLSPEHAPA------EMYDIMKTCWDADPLKRPTFKQIVQLI 302
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (279), Expect = 6e-28
Identities = 48/263 (18%), Positives = 90/263 (34%), Gaps = 46/263 (17%)
Query: 422 DFDAKYCIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
DF +G G +V A EL + A+K + E + ++++ H
Sbjct: 9 DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKE-NKVPYVTRERDVMSRLDH 67
Query: 481 RNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-------------------- 520
VK Y Y K G L + + +E
Sbjct: 68 PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK 127
Query: 521 ----LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA--LVGTYRYVAPD------Y 568
D+ +N+LL+ + ++DFG AK L P+S A VGT +YV+P+
Sbjct: 128 GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSA 187
Query: 569 RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
K D+++ + +++ G P + + + +++ P K
Sbjct: 188 CKSSDLWALGCIIYQLVAGLPP-------FRAGNEYLI-FQKIIKLEYDFPE-KFFPKAR 238
Query: 629 SIMEVAFSCLDVSPESRPTMQTI 651
++E L + R + +
Sbjct: 239 DLVE---KLLVLDATKRLGCEEM 258
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (278), Expect = 1e-27
Identities = 50/286 (17%), Positives = 99/286 (34%), Gaps = 60/286 (20%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFN--SPLPSDQIADQKEFFAEIEALTKIRHRNIVK 485
+GSG+ V + E + A K S + +++ E+ L +I+H N++
Sbjct: 18 LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 77
Query: 486 FYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------------------L 521
+ + ILI E + G L L+ + E
Sbjct: 78 LHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHF 137
Query: 522 DISSKNVLLDLEH----KAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKK 571
D+ +N++L + + + DFG+A + + + + GT +VAP+ +
Sbjct: 138 DLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKN-IFGTPEFVAPEIVNYEPLGLE 196
Query: 572 CDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIM 631
D++S V+ ++ G P + + + + + +
Sbjct: 197 ADMWSIGVITYILLSGASPF-----LGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFI 251
Query: 632 EVAFSCLDVSPESRPTMQTI----------TQQLLFSLVYFSYAHP 667
L P+ R T+Q TQQ L S +++HP
Sbjct: 252 R---RLLVKDPKKRMTIQDSLQHPWIKPKDTQQALSS----AWSHP 290
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (277), Expect = 2e-27
Identities = 47/290 (16%), Positives = 99/290 (34%), Gaps = 65/290 (22%)
Query: 415 EIIRAINDFDAKYCIGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEF 468
E+ R +G G G VY + +A+K N + + ++ EF
Sbjct: 16 EVAR--EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN---EAASMRERIEF 70
Query: 469 FAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE-------- 520
E + + ++V+ G S + +++I E + RG L + L + A
Sbjct: 71 LNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPP 130
Query: 521 --------------------------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-- 552
D++++N ++ + + DFG+ + +
Sbjct: 131 SLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYR 190
Query: 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM 606
+ R+++P+ + DV+SF V+ E+ P + N
Sbjct: 191 KGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQ--------PYQGLSNE 242
Query: 607 R-LDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ L +++ L + L +M C +P+ RP+ I +
Sbjct: 243 QVLRFVMEGGLLDKPDNCPDMLFELMR---MCWQYNPKMRPSFLEIISSI 289
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (277), Expect = 3e-27
Identities = 44/258 (17%), Positives = 81/258 (31%), Gaps = 46/258 (17%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
+G G G V+R E SK+ K + DQ EI L RHRNI+ +
Sbjct: 13 LGRGEFGIVHRCVETSSKKTYMAKFVKV-----KGTDQVLVKKEISILNIARHRNILHLH 67
Query: 488 GFCSHARHSILIYEYLKRGSLAT-------NLSNDAAAE------------------ELD 522
++I+E++ + L+ D
Sbjct: 68 ESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFD 127
Query: 523 ISSKNVLLDLEHKAHV--SDFGIAKFLKPDSSNWSALVGTYRYVAP-----DYRKKCDVY 575
I +N++ + + +FG A+ LKP + Y D++
Sbjct: 128 IRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMW 187
Query: 576 SFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF 635
S L ++ G +P F++ + I + ++ + + ++
Sbjct: 188 SLGTLVYVLLSGINP--FLAE---TNQQIIENIMNAEYTFDEEAFKEISIEAMDFVD--- 239
Query: 636 SCLDVSPESRPTMQTITQ 653
L +SR T Q
Sbjct: 240 RLLVKERKSRMTASEALQ 257
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 107 bits (268), Expect = 1e-26
Identities = 50/277 (18%), Positives = 103/277 (37%), Gaps = 52/277 (18%)
Query: 421 NDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR 479
+ ++ +G G V+ A L +AVK + L D + F E + +
Sbjct: 7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDP-SFYLRFRREAQNAAALN 65
Query: 480 HRNIVKFYGFCSHARHSI----LIYEYLKRGSLATNLSNDAAAEE--------------- 520
H IV Y + ++ EY+ +L + +
Sbjct: 66 HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALN 125
Query: 521 ---------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW---SALVGTYRYVAPDY 568
D+ N+++ + V DFGIA+ + ++ +A++GT +Y++P+
Sbjct: 126 FSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQ 185
Query: 569 RK------KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS-- 620
+ + DVYS + EV+ G+ P S +++ + + +PP +
Sbjct: 186 ARGDSVDARSDVYSLGCVLYEVLTGEPP-------FTGDSPVSVAYQHVREDPIPPSARH 238
Query: 621 PDVQGKLISIMEVAFSCLDVSPESRP-TMQTITQQLL 656
+ L +++ L +PE+R T + L+
Sbjct: 239 EGLSADLDAVVL---KALAKNPENRYQTAAEMRADLV 272
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 105 bits (263), Expect = 8e-26
Identities = 53/273 (19%), Positives = 100/273 (36%), Gaps = 52/273 (19%)
Query: 422 DFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKE-----FFAEIEAL 475
+++ K +G G V R P+ + AVK + A++ + E++ L
Sbjct: 4 NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63
Query: 476 TKIR-HRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------- 521
K+ H NI++ L+++ +K+G L L+ E
Sbjct: 64 RKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVI 123
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD--- 567
D+ +N+LLD + ++DFG + L P + GT Y+AP+
Sbjct: 124 CALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLRE-VCGTPSYLAPEIIE 182
Query: 568 ---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618
Y K+ D++S V+ ++ G P + M L ++
Sbjct: 183 CSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPP-------FWHRKQMLM-LRMIMSGNYQF 234
Query: 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
SP+ ++ ++ L V P+ R T +
Sbjct: 235 GSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEA 267
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Score = 104 bits (259), Expect = 3e-25
Identities = 51/271 (18%), Positives = 94/271 (34%), Gaps = 50/271 (18%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYG 488
IG G +G VY+A+ E A+KK + I EI L +++H NIVK Y
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGI--PSTTIREISILKELKHSNIVKLYD 67
Query: 489 FCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------DIS 524
+ +L++E+L + + E + D+
Sbjct: 68 VIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLK 127
Query: 525 SKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVYSF 577
+N+L++ E + ++DFG+A+ ++ + T Y APD Y D++S
Sbjct: 128 PQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSV 187
Query: 578 RVLALEVIKGKHP---------------RGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622
+ E++ G + P+V + + P +
Sbjct: 188 GCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWE 247
Query: 623 VQGKLISIMEVAF--SCLDVSPESRPTMQTI 651
K + + L + P R T +
Sbjct: 248 SFLKGLDESGIDLLSKMLKLDPNQRITAKQA 278
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Score = 105 bits (263), Expect = 3e-25
Identities = 46/264 (17%), Positives = 77/264 (29%), Gaps = 45/264 (17%)
Query: 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQ--KEFFAEIEALT 476
+NDF IG G G VY + + A+K + + + + ++
Sbjct: 3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVS 62
Query: 477 KIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL--------------- 521
IV I + + G L +LS E
Sbjct: 63 TGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEH 122
Query: 522 ---------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVA------- 565
D+ N+LLD +SD G+A + S VGT+ Y+A
Sbjct: 123 MHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS--VGTHGYMAPEVLQKG 180
Query: 566 PDYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625
Y D +S + ++++G P + +D M
Sbjct: 181 VAYDSSADWFSLGCMLFKLLRGHSP------FRQHKTKDKHEIDRMTLTMAVELPDSFSP 234
Query: 626 KLISIMEVAFSCLDVSPESRPTMQ 649
+L S++E L R
Sbjct: 235 ELRSLLE---GLLQRDVNRRLGCL 255
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 104 bits (259), Expect = 3e-25
Identities = 42/275 (15%), Positives = 87/275 (31%), Gaps = 55/275 (20%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFN-SPLPSDQIADQKEFFAEIEALTKIRHRNIVKF 486
+G G+ +VY+A + + +A+KK + + EI+ L ++ H NI+
Sbjct: 6 LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGL 65
Query: 487 YGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------D 522
H + L++++++ N D
Sbjct: 66 LDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRD 125
Query: 523 ISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVY 575
+ N+LLD ++DFG+AK + ++ V T Y AP+ Y D++
Sbjct: 126 LKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMW 185
Query: 576 SFRVLALEVIKGKHP-----------------RGFVSSILPSPSVINMRLDEMLDPRLPP 618
+ + E++ P + + P +P
Sbjct: 186 AVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPL 245
Query: 619 PS--PDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
L+ +++ +P +R T
Sbjct: 246 HHIFSAAGDDLLDLIQ---GLFLFNPCARITATQA 277
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 103 bits (257), Expect = 8e-25
Identities = 50/275 (18%), Positives = 97/275 (35%), Gaps = 47/275 (17%)
Query: 420 INDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ DF +G+G G V+ + + A+K + + E L+ +
Sbjct: 3 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRL-KQVEHTNDERLMLSIV 61
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL----------------- 521
H I++ +G A+ +I +Y++ G L + L
Sbjct: 62 THPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLH 121
Query: 522 -------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------Y 568
D+ +N+LLD ++DFG AK++ L GT Y+AP+ Y
Sbjct: 122 SKDIIYRDLKPENILLDKNGHIKITDFGFAKYV---PDVTYTLCGTPDYIAPEVVSTKPY 178
Query: 569 RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
K D +SF +L E++ G P + + +++L+ L P P +
Sbjct: 179 NKSIDWWSFGILIYEMLAGYTP-------FYDSNTMKT-YEKILNAELRFP-PFFNEDVK 229
Query: 629 SIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663
++ + R + + + +F
Sbjct: 230 DLLS---RLITRDLSQRLGNLQNGTEDVKNHPWFK 261
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 101 bits (253), Expect = 2e-24
Identities = 41/283 (14%), Positives = 88/283 (31%), Gaps = 54/283 (19%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IGSG G +Y + + E +A+K + E + ++ +
Sbjct: 15 IGSGSFGDIYLGTDIAAGEEVAIKLECVK------TKHPQLHIESKIYKMMQGGVGIPTI 68
Query: 488 GFC-SHARHSILIYEYLKRGSLATNLSND----------------AAAEEL--------D 522
+C + +++++ E L + E + D
Sbjct: 69 RWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRD 128
Query: 523 ISSKNVL---LDLEHKAHVSDFGIAKFLKPDSSN-------WSALVGTYRYVAPD----- 567
+ N L + ++ DFG+AK + ++ L GT RY + +
Sbjct: 129 VKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGI 188
Query: 568 -YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626
++ D+ S + + G P + + + +M P + +
Sbjct: 189 EQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP-IEVLCKGYPSE 247
Query: 627 LISIMEVAFSCLDVSPESRPTMQTITQQL--LFSLVYFSYAHP 667
+ + C + + +P + Q LF FSY +
Sbjct: 248 FATYLN---FCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYV 287
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (253), Expect = 4e-24
Identities = 50/269 (18%), Positives = 90/269 (33%), Gaps = 45/269 (16%)
Query: 420 INDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+NDFD +G G G V + + A+K + + + E L
Sbjct: 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAK-DEVAHTVTESRVLQNT 62
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEE------------------ 520
RH + + EY G L +LS + E
Sbjct: 63 RHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH 122
Query: 521 ------LDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP------DY 568
DI +N++LD + ++DFG+ K D + GT Y+AP DY
Sbjct: 123 SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDY 182
Query: 569 RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628
+ D + V+ E++ G+ P + + RL E++ + +
Sbjct: 183 GRAVDWWGLGVVMYEMMCGRLPF---------YNQDHERLFELILMEEIRFPRTLSPEAK 233
Query: 629 SIMEVAFSCLDVSPESRPTMQTIT-QQLL 656
S++ L P+ R ++++
Sbjct: 234 SLLA---GLLKKDPKQRLGGGPSDAKEVM 259
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 100 bits (250), Expect = 5e-24
Identities = 54/281 (19%), Positives = 100/281 (35%), Gaps = 16/281 (5%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
+ L L++N +T + + NLK+L L L N+ P + L L L+L +N
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 63 LSGSIPPSVGNLMLTVLALENNHFTGNLRH--NICRNGALERVIVGGNHFRGPIPKCLRN 120
L +P + L L + N T + N + + G +
Sbjct: 91 LK-ELPEKMPK-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
L I + N+ + G+ +LT L + N A++ L+ L +S N
Sbjct: 149 MKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIG------HL 234
+I+ + N L E L+ N +V K+P + + L N +
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264
Query: 235 PSEIGSLTKLEFLNLSTN--RFSSLIPESLGNLLKLHYLDL 273
P ++L +N ++ + P + + + L
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 78.5 bits (192), Expect = 2e-16
Identities = 47/269 (17%), Positives = 92/269 (34%), Gaps = 6/269 (2%)
Query: 66 SIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLV 125
+P + +L L+NN T + L +I+ N P L
Sbjct: 24 KVPKDLPP-DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82
Query: 126 RISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRS 185
R+ L N ++ + L + + + + + L + +
Sbjct: 83 RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGI 141
Query: 186 IPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLE 245
+ L+ ++ +I IP+ G SLT+L L GN++ + + L L
Sbjct: 142 ENGAFQGMKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLA 198
Query: 246 FLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGRE 305
L LS N S++ SL N L L L+ + + ++P L + + L +N +
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAI 257
Query: 306 IPSQICSMECCEVFCTITNSVPTNNFLNC 334
+ C + + +N +
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQY 286
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.1 bits (170), Expect = 1e-13
Identities = 33/221 (14%), Positives = 74/221 (33%), Gaps = 4/221 (1%)
Query: 143 GIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLS 202
+ + LD+ +N ++ L TL + N I++ P L L LS
Sbjct: 28 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87
Query: 203 LNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESL 262
N + K L L ++ + + + + +E + S + +
Sbjct: 88 KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAF 146
Query: 263 GNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEVFCTI 322
+ KL Y+ ++ I +P+ L L+EL L N + + + + +
Sbjct: 147 QGMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203
Query: 323 TNSVPTNNFLNCQKGYACQKVVLTFQQFSTSAKICPNLSRL 363
NS+ + + +++ L + + +
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 244
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.5 bits (140), Expect = 8e-10
Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 10/175 (5%)
Query: 169 CPK-----LSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKL 223
CP L + S + +P ++ DL N I +F L +L L
Sbjct: 4 CPFRCQCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTL 60
Query: 224 ILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELP 283
IL N++ P L KLE L LS N+ L + L +L + + + +
Sbjct: 61 ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF 120
Query: 284 KELGKLVQLSELELSHNFLGREIPS--QICSMECCEVFCTITNSVPTNNFLNCQK 336
L +++ + G E + + + + T ++P + +
Sbjct: 121 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE 175
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.1 bits (139), Expect = 9e-10
Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 2/131 (1%)
Query: 233 HLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQL 292
+P ++ L+L N+ + + NL LH L L + + P LV+L
Sbjct: 24 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81
Query: 293 SELELSHNFLGREIPSQICSMECCEVFCTITNSVPTNNFLNCQKGYACQKVVLTFQQFST 352
L LS N L +++ V V + F + + +
Sbjct: 82 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141
Query: 353 SAKICPNLSRL 363
+ +L
Sbjct: 142 ENGAFQGMKKL 152
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.8 bits (107), Expect = 1e-05
Identities = 33/135 (24%), Positives = 48/135 (35%), Gaps = 18/135 (13%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+L ELHL N +T + L +L KLGL N S+ N LR L L
Sbjct: 169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N L + + V+ L NN+ + +G N F P
Sbjct: 229 NKLVKVPGGLADHKYIQVVYLHNNNISA----------------IGSNDFCP--PGYNTK 270
Query: 121 CPNLVRISLEGNNMR 135
+ +SL N ++
Sbjct: 271 KASYSGVSLFSNPVQ 285
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 99.4 bits (247), Expect = 7e-24
Identities = 54/261 (20%), Positives = 92/261 (35%), Gaps = 58/261 (22%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSD--QIADQKEFFAEIEALTKIR--HRNI 483
+GSG GSVY + +A+K SD ++ + E+ L K+ +
Sbjct: 12 LGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGV 71
Query: 484 VKFYGFCSHARHSILIYEYL-----------KRGSLATNLSNDAAAEEL----------- 521
++ + +LI E +RG+L L+ + L
Sbjct: 72 IRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGV 131
Query: 522 ---DISSKNVLLDLE-HKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPDYR-------K 570
DI +N+L+DL + + DFG LK + ++ GT Y P++ +
Sbjct: 132 LHRDIKDENILIDLNRGELKLIDFGSGALLKD--TVYTDFDGTRVYSPPEWIRYHRYHGR 189
Query: 571 KCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630
V+S +L +++ G P I +R R+ LI
Sbjct: 190 SAAVWSLGILLYDMVCGDIPFEHDEEI--------IRGQVFFRQRVSSECQH----LIR- 236
Query: 631 MEVAFSCLDVSPESRPTMQTI 651
CL + P RPT + I
Sbjct: 237 -----WCLALRPSDRPTFEEI 252
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 99.6 bits (247), Expect = 1e-23
Identities = 57/293 (19%), Positives = 98/293 (33%), Gaps = 72/293 (24%)
Query: 421 NDFDAKYCIGSGRHGSVYRAELPS--------KEFLAVKKFNSPLPSDQIADQKEFFAEI 472
+ +G G G V AE +AVK S D + +E+
Sbjct: 13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK---DLSDLISEM 69
Query: 473 EALTKI-RHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL---------- 521
E + I +H+NI+ G C+ +I EY +G+L L
Sbjct: 70 EMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPE 129
Query: 522 ------------------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551
D++++NVL+ ++ ++DFG+A+ +
Sbjct: 130 EQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 189
Query: 552 SNWSALV--GTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV 603
+++AP+ Y + DV+SF VL E+ P P V
Sbjct: 190 YYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGS--------PYPGV 241
Query: 604 INMRLDEMLDPRLPPPSP-DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
L ++L P + +L +M C P RPT + + + L
Sbjct: 242 PVEELFKLLKEGHRMDKPSNCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 291
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.9 bits (240), Expect = 1e-22
Identities = 51/282 (18%), Positives = 94/282 (33%), Gaps = 52/282 (18%)
Query: 420 INDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+ +F IG G +G VY+A + E +A+KK ++ + EI L ++
Sbjct: 1 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGV--PSTAIREISLLKEL 58
Query: 479 RHRNIVKFYGFCSHARHSILIYEYLKRGSL-------ATNLSNDAAAEEL---------- 521
H NIVK L++E+L + T + L
Sbjct: 59 NHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 522 --------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
D+ +N+L++ E ++DFG+A+ ++ V T Y AP+
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK 178
Query: 568 -YRKKCDVYSFRVLALEVIKGKHPRGFVSSI---------------LPSPSVINMRLDEM 611
Y D++S + E++ + S I + P V +M +
Sbjct: 179 YYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKP 238
Query: 612 LDPRLPPPSPDVQGKLISIMEVAF--SCLDVSPESRPTMQTI 651
P+ + + L P R + +
Sbjct: 239 SFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAA 280
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.7 bits (237), Expect = 3e-22
Identities = 57/282 (20%), Positives = 94/282 (33%), Gaps = 46/282 (16%)
Query: 420 INDFDAKYCIGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEAL 475
I +F+ +G+G +G V+ + + A+K + + E + L
Sbjct: 23 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVL 82
Query: 476 TKIRHR-NIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------- 521
IR +V + LI +Y+ G L T+LS E
Sbjct: 83 EHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLAL 142
Query: 522 -----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS-ALVGTYRYVAPD-- 567
DI +N+LLD ++DFG++K D + + GT Y+APD
Sbjct: 143 EHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIV 202
Query: 568 ------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621
+ K D +S VL E++ G P F + R +P P
Sbjct: 203 RGGDSGHDKAVDWWSLGVLMYELLTGASP--FTVDGEKNSQAEISRRILKSEPPYPQEMS 260
Query: 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663
+ LI L P+ R + ++F
Sbjct: 261 ALAKDLIQ------RLLMKDPKKRLGCGPRDADEIKEHLFFQ 296
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.9 bits (235), Expect = 5e-22
Identities = 56/297 (18%), Positives = 100/297 (33%), Gaps = 70/297 (23%)
Query: 415 EIIRAINDFDAKYCIGSGRHGSVYRA------ELPSKEFLAVKKFNSPLPSDQIADQKEF 468
E R + +G G G V A + + +AVK ++ +
Sbjct: 9 EFPR--DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLK---EGATHSEHRAL 63
Query: 469 FAEIEALTKIRHR-NIVKFYGFCSHARHSILI-YEYLKRGSLATNLSND----------- 515
+E++ L I H N+V G C+ +++ E+ K G+L+T L +
Sbjct: 64 MSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAP 123
Query: 516 ---------------------AAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKF 546
E L D++++N+LL ++ + DFG+A+
Sbjct: 124 EDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARD 183
Query: 547 LKPDSSNW--SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL 598
+ D +++AP+ Y + DV+SF VL E+ +
Sbjct: 184 IYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP---YPGV 240
Query: 599 PSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQL 655
RL E R P + + + C P RPT + + L
Sbjct: 241 KIDEEFCRRLKEGTRMRAPDYTTP------EMYQTMLDCWHGEPSQRPTFSELVEHL 291
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 95.2 bits (235), Expect = 5e-22
Identities = 62/259 (23%), Positives = 108/259 (41%), Gaps = 6/259 (2%)
Query: 29 LVKLGLGGNQFRG--SLPSSVGNLSSLRYLFLFEN-NLSGSIPPSVGNL-MLTVLALENN 84
+ L L G +PSS+ NL L +L++ NL G IPP++ L L L + +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 85 HFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGI 144
+ +G + + + L + N G +P + + PNLV I+ +GN + G I +++G
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 145 YLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLN 204
+ L N L+ +++S N + + G+ + L+ N
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 205 HIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGN 264
+ + K N LR N++ G LP + L L LN+S N IP+ GN
Sbjct: 232 SLAFDLGKVGLSKNLNGLD-LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN 289
Query: 265 LLKLHYLDLSKYQFIQELP 283
L + + + + P
Sbjct: 290 LQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 60.1 bits (144), Expect = 2e-10
Identities = 38/185 (20%), Positives = 63/185 (34%), Gaps = 1/185 (0%)
Query: 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNL 63
L L N L+G +P +L +LV + GN+ G++P S G+ S L N
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 64 SGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPN 123
P + + + + + + I + + N
Sbjct: 186 LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245
Query: 124 LVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNIT 183
L + L N + GT+ + L L++S NN GEI G + + N
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCL 304
Query: 184 RSIPL 188
PL
Sbjct: 305 CGSPL 309
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 56.3 bits (134), Expect = 4e-09
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
NL L LR+N + G +P LK L L + N G +P GNL N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
Query: 63 -LSGSIPPS 70
L GS P+
Sbjct: 303 CLCGSPLPA 311
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 44.7 bits (104), Expect = 2e-05
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLP 44
L L L++ N L G IP + NL+ N+ P
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 44.0 bits (102), Expect = 4e-05
Identities = 51/248 (20%), Positives = 87/248 (35%), Gaps = 8/248 (3%)
Query: 92 HNICRNGALERVIVGGNHFRG--PIPKCLRNCPNLVRISLEGN-NMRGTISEAFGIYLNL 148
+ + + + G + PIP L N P L + + G N+ G I A L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 149 TFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVG 208
+L I+ N G I + L TL+ S N ++ ++P I +L L N I G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 209 KIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKL 268
IP +G + L + + + L F++LS N G+
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 269 HYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEV----FCTITN 324
+ L+K +L K L +N + +P + ++ F +
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLD-LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 325 SVPTNNFL 332
+P L
Sbjct: 283 EIPQGGNL 290
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 94.1 bits (233), Expect = 9e-22
Identities = 36/272 (13%), Positives = 84/272 (30%), Gaps = 56/272 (20%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRN-IVKF 486
IG G G ++ L + + +A+K +D + E + I
Sbjct: 13 IGEGSFGVIFEGTNLLNNQQVAIKFEPRR------SDAPQLRDEYRTYKLLAGCTGIPNV 66
Query: 487 YGFCSHARHSILIYEYLKRGSLATNLSN----------------DAAAEEL--------D 522
Y F H++L+ + L A + + D
Sbjct: 67 YYFGQEGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRD 126
Query: 523 ISSKNVLLDLEHKAH-----VSDFGIAKFLKPDSSN-------WSALVGTYRYVAPD--- 567
I N L+ + + V DFG+ KF + + L GT RY++ +
Sbjct: 127 IKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHL 186
Query: 568 ---YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624
++ D+ + + + ++G P + + + + + + + P ++
Sbjct: 187 GREQSRRDDLEALGHVFMYFLRGSLPWQGLK-----AATNKQKYERIGEKKQSTPLRELC 241
Query: 625 GKL-ISIMEVAFSCLDVSPESRPTMQTITQQL 655
+ +++ ++ P +
Sbjct: 242 AGFPEEFYKYMHYARNLAFDATPDYDYLQGLF 273
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.9 bits (235), Expect = 1e-21
Identities = 51/280 (18%), Positives = 87/280 (31%), Gaps = 60/280 (21%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G V A + +K +A+KK + P + + EI+ L + RH NI+
Sbjct: 16 IGEGAYGMVCSAYDNVNKVRVAIKKIS---PFEHQTYCQRTLREIKILLRFRHENIIGIN 72
Query: 488 GFCSHARHSILIYEYLKRGSLATN---------LSNDAAAEEL----------------- 521
+ YL + + LSND L
Sbjct: 73 DIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLH 132
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN---WSALVGTYRYVAPD-------YRK 570
D+ N+LL+ + DFG+A+ PD + + V T Y AP+ Y K
Sbjct: 133 RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTK 192
Query: 571 KCDVYSFRVLALEVIKGKHP-----------------RGFVSSILPSPSVINMRLDEMLD 613
D++S + E++ + L + R +
Sbjct: 193 SIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSL 252
Query: 614 PRLPPPSPDVQGKLISIMEVAF--SCLDVSPESRPTMQTI 651
P + + L +P R ++
Sbjct: 253 PHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQA 292
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.0 bits (230), Expect = 3e-21
Identities = 38/299 (12%), Positives = 89/299 (29%), Gaps = 66/299 (22%)
Query: 417 IRAINDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEAL 475
++ ++ IG G G V++A + + +A+KK + +++ EI+ L
Sbjct: 6 CDEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVL--MENEKEGFPITALREIKIL 63
Query: 476 TKIRHRNIVKFYGFCSHARHSI--------LIYEYLKRGSLATNLSND------------ 515
++H N+V C L++++ + +
Sbjct: 64 QLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVM 123
Query: 516 ----AAAEEL--------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSS----NWSALVG 559
+ D+ + NVL+ + ++DFG+A+ + ++ V
Sbjct: 124 QMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVV 183
Query: 560 TYRYVA-------PDYRKKCDVYSFRVLALEVIKGKHP---------RGFVSSILPSP-- 601
T Y DY D++ + E+ +S + S
Sbjct: 184 TLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITP 243
Query: 602 -------SVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF--SCLDVSPESRPTMQTI 651
+ E++ + ++ + + L + P R
Sbjct: 244 EVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDA 302
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.3 bits (228), Expect = 3e-21
Identities = 46/273 (16%), Positives = 94/273 (34%), Gaps = 52/273 (19%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IG G +G+V++A+ + E +A+K+ L D EI L +++H+NIV+ +
Sbjct: 10 IGEGTYGTVFKAKNRETHEIVALKRVR--LDDDDEGVPSSALREICLLKELKHKNIVRLH 67
Query: 488 GFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------------------DI 523
+ L++E+ + S + + D+
Sbjct: 68 DVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDL 127
Query: 524 SSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD-------YRKKCDVYS 576
+N+L++ + +++FG+A+ +SA V T Y PD Y D++S
Sbjct: 128 KPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWS 187
Query: 577 FRVLALEVIKGKHP------------------RGFVSSILPSPSVINMRLDEMLDPRLPP 618
+ E+ P PS + + + P
Sbjct: 188 AGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTS 247
Query: 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651
V + ++ + L +P R + +
Sbjct: 248 LVNVVPKLNATGRDLLQNLLKCNPVQRISAEEA 280
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.3 bits (226), Expect = 1e-20
Identities = 48/264 (18%), Positives = 93/264 (35%), Gaps = 55/264 (20%)
Query: 429 IGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKF 486
+G G +G V + ++E A+K + D + E+E + + +IV+
Sbjct: 20 LGLGINGKVLQIFNKRTQEKFALKM---------LQDCPKARREVELHWRASQCPHIVRI 70
Query: 487 YGFCSHA----RHSILIYEYLKRGSLAT--------NLSNDAAAE--------------- 519
+ + +++ E L G L + + A+E
Sbjct: 71 VDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI 130
Query: 520 ---ELDISSKNVLLDLEHK---AHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
D+ +N+L + ++DFG AK +S + T YVAP+
Sbjct: 131 NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTT-PCYTPYYVAPEVLGPEK 189
Query: 568 YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627
Y K CD++S V+ ++ G P + SP + + P +V ++
Sbjct: 190 YDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEW-SEVSEEV 248
Query: 628 ISIMEVAFSCLDVSPESRPTMQTI 651
++ + L P R T+
Sbjct: 249 KMLIR---NLLKTEPTQRMTITEF 269
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Score = 90.3 bits (223), Expect = 3e-20
Identities = 48/291 (16%), Positives = 91/291 (31%), Gaps = 67/291 (23%)
Query: 420 INDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI 478
+D+ +G G++ V+ A + + E + VK +K+ EI+ L +
Sbjct: 34 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP-------VKKKKIKREIKILENL 86
Query: 479 R-HRNIVKFYGFCSH--ARHSILIYEYLKRGSLAT---NLSNDAAAEEL----------- 521
R NI+ +R L++E++ L++ +
Sbjct: 87 RGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCH 146
Query: 522 -------DISSKNVLLDLE-HKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------ 567
D+ NV++D E K + D+G+A+F P ++ V + + P+
Sbjct: 147 SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE-YNVRVASRYFKGPELLVDYQ 205
Query: 568 -YRKKCDVYSFRVLALEVIKGKHP------------------------RGFVSSILPSPS 602
Y D++S + +I K P +
Sbjct: 206 MYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDP 265
Query: 603 VINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF--SCLDVSPESRPTMQTI 651
N L R L+S + F L +SR T +
Sbjct: 266 RFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREA 316
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.4 bits (218), Expect = 7e-20
Identities = 47/290 (16%), Positives = 90/290 (31%), Gaps = 55/290 (18%)
Query: 418 RAINDFDAKYCIGSGRHGSVYRAE--LPSKEFLAVKKFNSPLPSDQIADQ-KEFFAEIEA 474
RA ++ IG G +G V++A F+A+K+ + + A +
Sbjct: 4 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH 63
Query: 475 LTKIRHRNIVKFYGFCSHARHSILIYEYL----------------KRGSLATNLSNDAAA 518
L H N+V+ + C+ +R L + T D
Sbjct: 64 LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMF 123
Query: 519 EEL--------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYV 564
+ L D+ +N+L+ + ++DFG+A+ + S +V T Y
Sbjct: 124 QLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTS-VVVTLWYR 182
Query: 565 APD------YRKKCDVYSFRVLALEVIKGKHP---------------RGFVSSILPSPSV 603
AP+ Y D++S + E+ + K + P
Sbjct: 183 APEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRD 242
Query: 604 INMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQ 653
+ + P V ++ CL +P R + +
Sbjct: 243 VALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 292
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 87.7 bits (216), Expect = 4e-19
Identities = 65/332 (19%), Positives = 111/332 (33%), Gaps = 44/332 (13%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L NL +++ +N LT + P + NL LV + + NQ P + + LF +
Sbjct: 64 YLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 121
Query: 61 NNLSGSIPP------------SVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGN 108
+ ++ ++ + + + A + +
Sbjct: 122 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 181
Query: 109 HFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGK 168
+ SL N + + GI NL L ++ N
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLAS 239
Query: 169 CPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIP----------------- 211
L+ L+++ N I+ PL L+ L E L N I P
Sbjct: 240 LTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297
Query: 212 ---KEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKL 268
L +LT L L N + P + SLTKL+ L + N+ S SL NL +
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNI 353
Query: 269 HYLDLSKYQFIQELPKELGKLVQLSELELSHN 300
++L Q P L L ++++L L+
Sbjct: 354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 85.4 bits (210), Expect = 2e-18
Identities = 63/343 (18%), Positives = 108/343 (31%), Gaps = 52/343 (15%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLF--- 57
+L + L + + E L +L ++ NQ P + NL+ L +
Sbjct: 42 DLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN 97
Query: 58 -------------LFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVI 104
+ + + + + L + N +I L +
Sbjct: 98 NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157
Query: 105 VGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIAS 164
+ K L N L R+ + N + A L L ++N
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE--SLIATNNQISDITP- 214
Query: 165 NWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLI 224
G L L+++ N + + +L+ L + DL+ N I P L LT+L
Sbjct: 215 -LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 269
Query: 225 LRGNQLIGHLP--------------------SEIGSLTKLEFLNLSTNRFSSLIPESLGN 264
L NQ+ P S I +L L +L L N S + P + +
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSS 327
Query: 265 LLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIP 307
L KL L + + L L ++ L HN + P
Sbjct: 328 LTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTP 368
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 72.0 bits (175), Expect = 5e-14
Identities = 66/346 (19%), Positives = 107/346 (30%), Gaps = 48/346 (13%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L + L +T + +L + L + S+ V L++L +
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSN 75
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N L+ I P L + + NN N + P+
Sbjct: 76 NQLTD-ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134
Query: 121 CP------NLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN-------WG 167
+ IS +L L +I+SN
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194
Query: 168 KCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRG 227
K L +L + N I+ PL I + L+E L+ N + L +LT L L
Sbjct: 195 KLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250
Query: 228 NQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIP--------------------ESLGNLLK 267
NQ+ P + LTKL L L N+ S++ P + NL
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308
Query: 268 LHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSM 313
L YL L P + L +L L ++N + S + ++
Sbjct: 309 LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANL 350
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 46.1 bits (108), Expect = 8e-06
Identities = 30/218 (13%), Positives = 67/218 (30%), Gaps = 9/218 (4%)
Query: 192 NLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLST 251
L+ + L ++ + + L+ +T L I + + L L +N S
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSN 75
Query: 252 NRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQIC 311
N+ + + P L NL KL + ++ Q P + L + + +
Sbjct: 76 NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 312 SMECCEVFCTITNSVPTNNFLNCQKGYACQKVVLTFQQFSTSAKICPNLSRLPTNHHPQS 371
TI++ + + Q+ + + + +N
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQ---VTDLKPLANLTTLERLDISSNKVSDI 190
Query: 372 GCISVIAYVPIIWDQANREGQRSPQNSQGLLSILSFKG 409
++ + + + N+ +P L LS G
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNG 228
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.4 bits (213), Expect = 7e-19
Identities = 53/303 (17%), Positives = 103/303 (33%), Gaps = 64/303 (21%)
Query: 408 KGKFDYVEIIRAINDFDAKY----CIGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQI 462
+ F E+ + + A Y +GSG +G+V A + + +A+KK P S+
Sbjct: 1 RSGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSEL- 59
Query: 463 ADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS------ILIYEY--------LKRGSL 508
K + E+ L +RH N++ + L+ + +K L
Sbjct: 60 -FAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKL 118
Query: 509 ATNLSNDAAAEEL--------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554
+ + L D+ N+ ++ + + + DFG+A+ + + +
Sbjct: 119 GEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGY 178
Query: 555 SALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHP----------RGFVSSI 597
V T Y AP+ Y + D++S + E+I GK + +
Sbjct: 179 ---VVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVT 235
Query: 598 LPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFS---------CLDVSPESRPTM 648
P+ RL P+++ K + + S L + E R T
Sbjct: 236 GTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTA 295
Query: 649 QTI 651
Sbjct: 296 GEA 298
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 85.2 bits (210), Expect = 2e-18
Identities = 47/278 (16%), Positives = 86/278 (30%), Gaps = 47/278 (16%)
Query: 417 IRAINDFDAKYCIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEAL 475
++ FD +G+G G V + S A+K + + E L
Sbjct: 37 TAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKL-KQIEHTLNEKRIL 95
Query: 476 TKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL-------------- 521
+ +VK + ++ EY+ G + ++L E
Sbjct: 96 QAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFE 155
Query: 522 ----------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP----- 566
D+ +N+L+D + V+DFG AK L GT +AP
Sbjct: 156 YLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKR---VKGRTWTLCGTPEALAPEIILS 212
Query: 567 -DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625
Y K D ++ VL E+ G P + +++ E +
Sbjct: 213 KGYNKAVDWWALGVLIYEMAAGYPP-------FFADQ--PIQIYEKIVSGKVRFPSHFSS 263
Query: 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663
L ++ + L V R + + +F+
Sbjct: 264 DLKDLLR---NLLQVDLTKRFGNLKNGVNDIKNHKWFA 298
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.5 bits (208), Expect = 3e-18
Identities = 60/291 (20%), Positives = 96/291 (32%), Gaps = 68/291 (23%)
Query: 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH 480
+ IG+G G VY+A+L S E +A+KK D++ E++ + K+ H
Sbjct: 21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ--------DKRFKNRELQIMRKLDH 72
Query: 481 RNIVKFYGFCSHA------RHSILIYEYLKRGSLATNLSNDAAAEEL------------- 521
NIV+ F + + L+ +Y+ A + L
Sbjct: 73 CNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLF 132
Query: 522 --------------DISSKNVLLDLE-HKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAP 566
DI +N+LLD + + DFG AK L N S + Y Y AP
Sbjct: 133 RSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRY-YRAP 191
Query: 567 -------DYRKKCDVYSFRVLALEVIKGKHP-----------RGFVSSILPSPSVINMRL 608
DY DV+S + E++ G+ P+ I
Sbjct: 192 ELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMN 251
Query: 609 DEMLDPRLP----PPSPDVQGKLISIMEVAF--SCLDVSPESRPTMQTITQ 653
+ + P P V +A L+ +P +R T
Sbjct: 252 PNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 302
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.2 bits (202), Expect = 2e-17
Identities = 48/303 (15%), Positives = 99/303 (32%), Gaps = 64/303 (21%)
Query: 408 KGKFDYVEIIRAINDFDAKY----CIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQI 462
+ F E+ + I + +Y +GSG +GSV A + +AVKK + P S
Sbjct: 1 RPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSII- 59
Query: 463 ADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR-----HSILIYEYLKRGSLATNLSNDAA 517
K + E+ L ++H N++ + AR + + + +L L +
Sbjct: 60 -HAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKL 118
Query: 518 AEEL-----------------------DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554
++ D+ N+ ++ + + + DFG+A+ + + +
Sbjct: 119 TDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGY 178
Query: 555 SALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHP---------------RG 592
V T Y AP+ Y + D++S + E++ G+
Sbjct: 179 ---VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV 235
Query: 593 FVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAF----SCLDVSPESRPTM 648
+ + + P + I +A L + + R T
Sbjct: 236 GTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITA 295
Query: 649 QTI 651
Sbjct: 296 AQA 298
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.1 bits (193), Expect = 8e-17
Identities = 48/255 (18%), Positives = 83/255 (32%), Gaps = 6/255 (2%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
+ + L N ++ + ++L L L N ++ L+ L L L +N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 63 LSGSIPPSV--GNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
S+ P+ G L L L+ AL+ + + N + R+
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
NL + L GN + AF +L L + N + +L TL + N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240
N++ + L L L+ N V L K +++ LP
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQ---R 267
Query: 241 LTKLEFLNLSTNRFS 255
L + L+ N
Sbjct: 268 LAGRDLKRLAANDLQ 282
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.0 bits (172), Expect = 4e-14
Identities = 44/246 (17%), Positives = 81/246 (32%), Gaps = 3/246 (1%)
Query: 66 SIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLV 125
++P + + L N + + L + + N L
Sbjct: 25 AVPVGIPAA-SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83
Query: 126 RISLEGNNMRGTI-SEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITR 184
++ L N ++ F L L + + L L + N +
Sbjct: 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143
Query: 185 SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKL 244
+L L L N I + F L+SL +L+L N++ P L +L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203
Query: 245 EFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFLGR 304
L L N S+L E+L L L YL L+ ++ + + L + S + +
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPC 262
Query: 305 EIPSQI 310
+P ++
Sbjct: 263 SLPQRL 268
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (140), Expect = 5e-10
Identities = 43/208 (20%), Positives = 73/208 (35%), Gaps = 27/208 (12%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
L L LHL L L P L +L L L N + + +L +L +LFL
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N +S + L +L+R+++ N P R+
Sbjct: 163 NRISSVPERAFRGLH-----------------------SLDRLLLHQNRVAHVHPHAFRD 199
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
L+ + L NN+ +EA L +L ++DN + + + L S +
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW-AWLQKFRGSSS 258
Query: 181 NITRSIPLEIGNLSTLNEFDLSLNHIVG 208
+ S+P + L+ N + G
Sbjct: 259 EVPCSLPQRLAGRDLK---RLAANDLQG 283
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.8 bits (180), Expect = 1e-14
Identities = 44/287 (15%), Positives = 85/287 (29%), Gaps = 67/287 (23%)
Query: 429 IGSGRHGSVYRA-ELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFY 487
IGSG G V A + +A+KK + P + K + E+ + + H+NI+
Sbjct: 25 IGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQT--HAKRAYRELVLMKCVNHKNIISLL 82
Query: 488 GFCSHARHS------ILIYEYLKRGSLATNLSNDAAAEEL-------------------- 521
+ + L+ E +
Sbjct: 83 NVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIH 142
Query: 522 -DISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDV 574
D+ N+++ + + DFG+A+ S + V T Y AP+ Y++ D+
Sbjct: 143 RDLKPSNIVVKSDCTLKILDFGLART-AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDI 201
Query: 575 YSFRVLALEVIKGKHP---------------------RGFVSSILPSPSVINMRLDEMLD 613
+S + E+++ K F+ + P+ +
Sbjct: 202 WSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAG 261
Query: 614 PRLPPPSPDVQGKLISIMEVAFS---------CLDVSPESRPTMQTI 651
P PD S + L + P R ++
Sbjct: 262 LTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDA 308
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.1 bits (144), Expect = 2e-10
Identities = 36/209 (17%), Positives = 69/209 (33%), Gaps = 6/209 (2%)
Query: 46 SVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIV 105
V ++S + + NL+ ++PP + T+L L N + L ++ +
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLPKD-TTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 106 GGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN 165
+ + P L + L N ++ + D+S N
Sbjct: 63 --DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPLGA 119
Query: 166 WGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLIL 225
+L L + N + P + L + L+ N++ L +L L+L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
Query: 226 RGNQLIGHLPSEIGSLTKLEFLNLSTNRF 254
+ N L +P L F L N +
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.6 bits (140), Expect = 5e-10
Identities = 40/178 (22%), Positives = 60/178 (33%), Gaps = 3/178 (1%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
+ LHL +N L L +L L + G L L L L N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQ 88
Query: 63 LSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCP 122
L LTVL + N T + G L+ + + GN + P L P
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 123 NLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
L ++SL NN+ + NL L + +N+ + I + L + N
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.8 bits (138), Expect = 9e-10
Identities = 40/208 (19%), Positives = 67/208 (32%), Gaps = 8/208 (3%)
Query: 25 NLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNL-MLTVLALEN 83
+ S +++ +LP + L L EN L ++ LT L L+
Sbjct: 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 84 NHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFG 143
T + ++ +P + P L + + N + A
Sbjct: 65 AELTKLQVDGTLPV---LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 144 IYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSL 203
L L + N PKL L+++ NN+T + L L+ L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 204 NHIVGKIPKEFGKLNSLTKLILRGNQLI 231
N + IPK F + L L GN +
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (118), Expect = 3e-07
Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 26/209 (12%)
Query: 113 PIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKL 172
PI + + + ++ + N+ + + + T L +S+N + + +L
Sbjct: 2 PICEV-SKVASHLEVNCDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRL 57
Query: 173 STLNVS---------------------MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIP 211
+ LN+ +N +S+PL L L D+S N +
Sbjct: 58 TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 212 KEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYL 271
L L +L L+GN+L P + KLE L+L+ N + L L L L L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 272 DLSKYQFIQELPKELGKLVQLSELELSHN 300
L + +PK L L N
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (118), Expect = 3e-07
Identities = 18/162 (11%), Positives = 46/162 (28%), Gaps = 3/162 (1%)
Query: 213 EFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLD 272
E K+ S ++ L LP ++ L+LS N + +L +L L+
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 273 LSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEVFCTITNSVPTNNFL 332
L + + + ++ +L + + + ++ +V S+P
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 333 NCQKGYACQKVVLTFQQFSTSAKICPNLSRLPTNHHPQSGCI 374
+ + + + +
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 0.001
Identities = 33/158 (20%), Positives = 51/158 (32%), Gaps = 3/158 (1%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
T L +L+L LT L L L L NQ + + F
Sbjct: 53 PYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
S + G L L L+ N + LE++ + N+ L
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNF 158
NL + L+ N++ TI + F L F + N +
Sbjct: 171 LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 57.0 bits (136), Expect = 1e-09
Identities = 32/226 (14%), Positives = 69/226 (30%), Gaps = 17/226 (7%)
Query: 25 NLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENN 84
L + +K+ G + ++ + +L + L F ++ +I L L L++N
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN 73
Query: 85 HFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGI 144
++ L ++ ++ +
Sbjct: 74 QI-----TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI-----TDVT 123
Query: 145 YLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLN 204
L +I + + +S+ N S + NLS L N
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183
Query: 205 HIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLS 250
I P L +L ++ L+ NQ+ P + + + L + L+
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 50.4 bits (119), Expect = 2e-07
Identities = 35/202 (17%), Positives = 57/202 (28%), Gaps = 15/202 (7%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+L + L +T + + L +L+ L L NQ + + NL+ + L L
Sbjct: 39 DLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQITD--LAPLKNLTKITELELSG 94
Query: 61 NNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRN 120
N L + + T+ + L I
Sbjct: 95 NPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL-------YLDLNQITNISPL 147
Query: 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN 180
L N + + LT L DN P L +++ N
Sbjct: 148 AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN 205
Query: 181 NITRSIPLEIGNLSTLNEFDLS 202
I+ PL N S L L+
Sbjct: 206 QISDVSPL--ANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 31/214 (14%), Positives = 61/214 (28%), Gaps = 22/214 (10%)
Query: 100 LERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFF 159
++ G ++ + + + +S G + E NL L++ DN
Sbjct: 21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT 76
Query: 160 GEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNS 219
L+ + +I + + L
Sbjct: 77 DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136
Query: 220 LTKLILRGNQLIGHL--------------PSEIGSLTKLEFLNLSTNRFSSLIPESLGNL 265
I + L G + + +L+KL L N+ S + P L +L
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASL 194
Query: 266 LKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299
L + L Q I ++ L L + L++
Sbjct: 195 PNLIEVHLKNNQ-ISDVS-PLANTSNLFIVTLTN 226
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (135), Expect = 2e-09
Identities = 40/250 (16%), Positives = 92/250 (36%), Gaps = 16/250 (6%)
Query: 27 KSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLM--LTVLALENN 84
+ ++ + L + ++++ L + + S + + L L+LE
Sbjct: 23 QGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81
Query: 85 HFTGNLRHNICRNGALERVIVGG--NHFRGPIPKCLRNCPNLVRISLEGNNMRG------ 136
+ + + + +N L R+ + G + L +C L ++L
Sbjct: 82 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141
Query: 137 TISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMN-NITRSIPLEIGNLST 195
++ L N ++++ +CP L L++S + + E L+
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201
Query: 196 LNEFDLS-LNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRF 254
L LS I+ + E G++ +L L + G G L +L L ++ + F
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHF 258
Query: 255 SSLIPESLGN 264
+++ ++GN
Sbjct: 259 TTIARPTIGN 268
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (105), Expect = 2e-05
Identities = 39/228 (17%), Positives = 76/228 (33%), Gaps = 12/228 (5%)
Query: 58 LFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRG-PIPK 116
L NL + + + + + L + ++ + + + +
Sbjct: 7 LTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHG 65
Query: 117 CLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIA--SNWGKCPKLST 174
L C L +SLEG + I NL L++S + F E A + C +L
Sbjct: 66 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125
Query: 175 LNV------SMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGN 228
LN+ + ++ ++ ++ LN N + + +L L L +
Sbjct: 126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 185
Query: 229 QLI-GHLPSEIGSLTKLEFLNLS-TNRFSSLIPESLGNLLKLHYLDLS 274
++ E L L+ L+LS LG + L L +
Sbjct: 186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 56.8 bits (135), Expect = 3e-09
Identities = 52/324 (16%), Positives = 87/324 (26%), Gaps = 26/324 (8%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLF----- 57
EL L + L+ L P +L+SLV N LP +L SL
Sbjct: 38 RQAHELELNNLGLSSL-PELPPHLESLV---ASCNSLT-ELPELPQSLKSLLVDNNNLKA 92
Query: 58 -------LFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHF 110
L +S + + L + + +L+ +LE + G N
Sbjct: 93 LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152
Query: 111 RGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCP 170
+ + + + +
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212
Query: 171 KLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL 230
+ + N T + F L+ L + N
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272
Query: 231 IGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLV 290
+ S LE LN+S N+ +P L L S + E+P+
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNH-LAEVPELPQN-- 325
Query: 291 QLSELELSHNFLGREIPSQICSME 314
L +L + +N L RE P S+E
Sbjct: 326 -LKQLHVEYNPL-REFPDIPESVE 347
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 53.3 bits (126), Expect = 4e-08
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 154 SDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKE 213
N EI S P L LNVS N + +P L L S NH+ ++P+
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHL-AEVPEL 322
Query: 214 FGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLN 248
+L +L + N L P S+ L +
Sbjct: 323 PQ---NLKQLHVEYNPLRE-FPDIPESVEDLRMNS 353
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 51.4 bits (121), Expect = 2e-07
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 10/103 (9%)
Query: 165 NWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLI 224
+ +L +N + I +L E ++S N ++ ++P L +LI
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLI 310
Query: 225 LRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL--IPESLGNL 265
N L +P +L + L++ N IPES+ +L
Sbjct: 311 ASFNHL-AEVPELPQNLKQ---LHVEYNPLREFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 49.8 bits (117), Expect = 5e-07
Identities = 51/303 (16%), Positives = 76/303 (25%), Gaps = 22/303 (7%)
Query: 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFEN 61
+L L N LT L P +LKSL+ P S L
Sbjct: 57 PPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE 115
Query: 62 N----LSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKC 117
I +L + F + + L+ + +
Sbjct: 116 LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK 175
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLN- 176
L S+ N LT + +N N
Sbjct: 176 KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNY 235
Query: 177 -------VSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQ 229
LS L LN +I SL +L + N+
Sbjct: 236 LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 295
Query: 230 LIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKL 289
LI LP+ L +L S N + +PE N L L + ++E P +
Sbjct: 296 LI-ELPALPPRLERL---IASFNHLAE-VPELPQN---LKQLHVEYNP-LREFPDIPESV 346
Query: 290 VQL 292
L
Sbjct: 347 EDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 45.2 bits (105), Expect = 1e-05
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
+L EL++ +N L L L +L N +P +L+ L +
Sbjct: 282 LPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHL-AEVPEL---PQNLKQLHVEY 333
Query: 61 NNLSG--SIPPSVGNLML 76
N L IP SV +L +
Sbjct: 334 NPLREFPDIPESVEDLRM 351
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 54.4 bits (130), Expect = 4e-09
Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 47/186 (25%)
Query: 429 IGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAE--------------IEA 474
+G G+ +V+ VK S + +K + + A
Sbjct: 8 MGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRA 67
Query: 475 LTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSNDAAAEEL------------- 521
L K++ + K Y + + ++ K + D + +
Sbjct: 68 LQKLQGLAVPKVYAWEGN--AVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRGIV 125
Query: 522 --DISSKNVLLDLEHKAHVSDFGIAK---------FLKPDSSNWSALVGTYRYVAPDYRK 570
D+S NVL+ E + DF + L+ D N Y + YR
Sbjct: 126 HGDLSQYNVLVS-EEGIWIIDFPQSVEVGEEGWREILERDVRNII------TYFSRTYRT 178
Query: 571 KCDVYS 576
+ D+ S
Sbjct: 179 EKDINS 184
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.3 bits (129), Expect = 2e-08
Identities = 36/251 (14%), Positives = 83/251 (33%), Gaps = 52/251 (20%)
Query: 424 DAKY----CIGSGRHGSVYRAE-LPSKEFLAVKKFNSPLPSDQIAD------QKEFFAEI 472
DA+Y +G G +V+ A+ + + +A+K + A+ Q+ A+
Sbjct: 12 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADN 71
Query: 473 EALTKIRHRNIVKFYGFCSHARHSILIYEYLKRGSLATNLSND----------------- 515
+ +I+K +H + + + L+
Sbjct: 72 TKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQIS 131
Query: 516 ----AAAEEL---------DISSKNVLLDLE-HKAHVSDFGIAKFLKPDSS--NWSALVG 559
+ + DI +NVL+++ ++ IA +++ +
Sbjct: 132 KQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQ 191
Query: 560 TYRYVAP------DYRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD 613
T Y +P + D++S L E+I G F S + + + ++++
Sbjct: 192 TREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFL--FEPDEGHSYTKDDDHIAQIIE 249
Query: 614 PRLPPPSPDVQ 624
PS ++
Sbjct: 250 LLGELPSYLLR 260
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (126), Expect = 5e-08
Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 10/93 (10%)
Query: 196 LNEFDLSLNHIVGKIPKE-FGKLNSLTKLILRGNQL----IGHLPSEIGSLTKLEFLNLS 250
+ D+ + E L + L L + S + L LNL
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 251 TNRFSSLIPESLGNLL-----KLHYLDLSKYQF 278
+N + + L K+ L L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (115), Expect = 1e-06
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 218 NSLTKLILRGNQL----IGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLK-----L 268
+ L L L + L + + + L L+LS N L ++ L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 269 HYLDLSKYQFIQELPKELGKLVQ 291
L L + +E+ L L +
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEK 451
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (111), Expect = 3e-06
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 10/94 (10%)
Query: 146 LNLTFLDISDNNFFGE-IASNWGKCPKLSTLNVSMNNIT----RSIPLEIGNLSTLNEFD 200
L++ LDI A + + + +T + I + L E +
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 201 LSLNHIVGKIPKEFGKL-----NSLTKLILRGNQ 229
L N + + + KL L+
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (109), Expect = 6e-06
Identities = 17/189 (8%), Positives = 48/189 (25%), Gaps = 10/189 (5%)
Query: 219 SLTKLILRGNQLI-GHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLK----LHYLDL 273
+ L ++ +L + L + + + L + + + + L+ L L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 274 SKYQFIQELPKELGKLVQ-----LSELELSHNFLGREIPSQICSMECCEVFCTITNSVPT 328
+ + + +Q + +L L + L + S +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 329 NNFLNCQKGYACQKVVLTFQQFSTSAKICPNLSRLPTNHHPQSGCISVIAYVPIIWDQAN 388
+ + + + C + + + + N
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182
Query: 389 REGQRSPQN 397
G R
Sbjct: 183 EAGVRVLCQ 191
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.5 bits (108), Expect = 8e-06
Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 9/87 (10%)
Query: 192 NLSTLNEFDLSLNHI----VGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS-----LT 242
S L L+ + + +SL +L L N L ++
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 243 KLEFLNLSTNRFSSLIPESLGNLLKLH 269
LE L L +S + + L L K
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDK 453
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (103), Expect = 3e-05
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 9/80 (11%)
Query: 147 NLTFLDISDNNFFGE----IASNWGKCPKLSTLNVSMNNITRSIPLEIG-----NLSTLN 197
L L ++D + +A+ L L++S N + + L++ L
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429
Query: 198 EFDLSLNHIVGKIPKEFGKL 217
+ L + ++ L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (102), Expect = 4e-05
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 11/103 (10%)
Query: 4 NLRELHLRDNYLTGLIPTETW-NLKSLVKLGLGGNQFRG----SLPSSVGNLSSLRYLFL 58
+++ L ++ L+ E L+ + L + S++ +L L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 59 FENNLSGSIPPSVG------NLMLTVLALENNHFTGNLRHNIC 95
N L V + + L+L+N TG +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 105
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (100), Expect = 6e-05
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 242 TKLEFLNLSTNRFS----SLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQ-----L 292
+ L L L+ S S + +L L LDLS +L + V+ L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 293 SELELSHNFLGREIPSQICSME 314
+L L + E+ ++ ++E
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALE 450
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (91), Expect = 8e-04
Identities = 10/90 (11%), Positives = 28/90 (31%), Gaps = 10/90 (11%)
Query: 123 NLVRISLEGNNMRGT-ISEAFGIYLNLTFLDISDNNF----FGEIASNWGKCPKLSTLNV 177
++ + ++ + +E + + + D +I+S P L+ LN+
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 178 SMNNITRSIPLEIG-----NLSTLNEFDLS 202
N + + + + L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.4 bits (112), Expect = 3e-07
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 7/120 (5%)
Query: 174 TLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGH 233
L+++ ++T + + L + DLS N + P L L +L+ +
Sbjct: 2 VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLE--VLQASDNALE 56
Query: 234 LPSEIGSLTKLEFLNLSTNRFSSL-IPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQL 292
+ +L +L+ L L NR + L + +L L+L + + +L ++
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEM 115
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.4 bits (112), Expect = 3e-07
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 8/119 (6%)
Query: 151 LDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKI 210
L ++ + + + + ++ L++S N + P + L L + +
Sbjct: 3 LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQA--SDNALEN 57
Query: 211 PKEFGKLNSLTKLILRGNQLIG-HLPSEIGSLTKLEFLNLSTNRFSSL--IPESLGNLL 266
L L +L+L N+L + S +L LNL N I E L +L
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.9 bits (95), Expect = 7e-05
Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 7/119 (5%)
Query: 127 ISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSI 186
+ L ++ T+ L +T LD+S N L L ++
Sbjct: 3 LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQ--ASDNALEN 57
Query: 187 PLEIGNLSTLNEFDLSLNHIVG-KIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKL 244
+ NL L E L N + + L L L+GN L L ++
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.9 bits (95), Expect = 7e-05
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
Query: 200 DLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIP 259
L+ + + +L +T L L N+L P+ + +L LE L S N ++
Sbjct: 4 HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV-- 58
Query: 260 ESLGNLLKLHYLDLSKYQFIQ-ELPKELGKLVQLSELELSHNFL 302
+ + NL +L L L + Q + L +L L L N L
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.1 bits (93), Expect = 1e-04
Identities = 30/131 (22%), Positives = 45/131 (34%), Gaps = 27/131 (20%)
Query: 6 RELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSG 65
R LHL LT L E L + L L N+ R P ++ L L + +N
Sbjct: 1 RVLHLAHKDLTVLCHLE--QLLLVTHLDLSHNRLRAL-PPALAALRCL-EVLQASDNALE 56
Query: 66 SIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLV 125
++ L L L NN + L +CP LV
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQ-----------------------SAAIQPLVSCPRLV 93
Query: 126 RISLEGNNMRG 136
++L+GN++
Sbjct: 94 LLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (88), Expect = 5e-04
Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 7/115 (6%)
Query: 114 IPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLS 173
+ L + + L N +R L L SDN +
Sbjct: 12 VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGVANLPRLQ-- 68
Query: 174 TLNVSMNNITRSIPLE-IGNLSTLNEFDLSLNHIVGK---IPKEFGKLNSLTKLI 224
L + N + +S ++ + + L +L N + + + L S++ ++
Sbjct: 69 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 44.6 bits (104), Expect = 1e-05
Identities = 23/194 (11%), Positives = 53/194 (27%), Gaps = 23/194 (11%)
Query: 25 NLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNL-MLTVLALEN 83
+K L ++ + L+S+ + +++ + L +T L L
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77
Query: 84 NHFTG---------------NLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRIS 128
N T + + + + + +L ++
Sbjct: 78 NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137
Query: 129 LEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPL 188
L ++N +I KL L +S N+I+ +
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS-DLR- 194
Query: 189 EIGNLSTLNEFDLS 202
+ L L+ +L
Sbjct: 195 ALAGLKNLDVLELF 208
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 43.5 bits (101), Expect = 3e-05
Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 14/175 (8%)
Query: 100 LERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFF 159
++++I + + ++ PN+ ++ L GN + A NL L +
Sbjct: 48 IDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLA-----NLKNLGWLFLDEN 100
Query: 160 GEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNS 219
+ K K + ++ + +I L L + + +
Sbjct: 101 KVKDLSSLKDLK----KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLT 156
Query: 220 LTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLS 274
+ + I + + LTKL+ L LS N S L +L L L L+L
Sbjct: 157 KLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF 208
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (103), Expect = 2e-05
Identities = 44/236 (18%), Positives = 77/236 (32%), Gaps = 9/236 (3%)
Query: 52 SLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFR 111
S R E+ ++ IP + L + G LE++ + N
Sbjct: 9 SNRVFLCQESKVT-EIPSDLPR-NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 66
Query: 112 GPIPKCLRNCPNLVRISLEG--NNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKC 169
I + + + NN+ EAF NL +L IS+ +
Sbjct: 67 EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 126
Query: 170 PKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLT-KLILRGN 228
+ L++ N +I + L LN + + +L L N
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186
Query: 229 QLIGHLPSEI-GSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELP 283
+ LP+++ + L++S R SL L NL KL +++LP
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKLP 239
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (91), Expect = 6e-04
Identities = 32/238 (13%), Positives = 67/238 (28%), Gaps = 11/238 (4%)
Query: 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNL 63
+ R +++ +T IP++ ++ ++L + R + L + + +N++
Sbjct: 9 SNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65
Query: 64 SGSIPPSVGNLML-----TVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCL 118
I V + + + N + N + G + K
Sbjct: 66 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125
Query: 119 RNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVS 178
L+ I N + G+ L ++ N +
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185
Query: 179 MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPS 236
NN+ S D+S I +L KL R + LP+
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (88), Expect = 0.001
Identities = 28/205 (13%), Positives = 49/205 (23%), Gaps = 5/205 (2%)
Query: 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENN 62
N EL L + L K+ + N + + V + + E
Sbjct: 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88
Query: 63 LSGSIPPSVGNLMLTVLALENNHFTG-----NLRHNICRNGALERVIVGGNHFRGPIPKC 117
+ L L TG ++ L + N
Sbjct: 89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148
Query: 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177
+ V + L N ++ + AF +NN + L++
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208
Query: 178 SMNNITRSIPLEIGNLSTLNEFDLS 202
S I + NL L
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARSTY 233
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (97), Expect = 5e-05
Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 14/145 (9%)
Query: 114 IPKCLRNCPNLVRISLEGNNMRGTIS-EAFGIYLNLTFLDISDNNFFGEIASNWGKCPKL 172
+ + + + +L+ +R A I + L ++ + P+L
Sbjct: 12 LKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN----RRSSMAATLRIIEENIPEL 67
Query: 173 STLNVSMNNITR--SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL 230
+LN+S N + R + + L +LS N + + + K L +L L GN L
Sbjct: 68 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127
Query: 231 IGHLPSE-------IGSLTKLEFLN 248
+ KL L+
Sbjct: 128 SDTFRDQSTYISAIRERFPKLLRLD 152
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 0.002
Identities = 28/143 (19%), Positives = 43/143 (30%), Gaps = 8/143 (5%)
Query: 172 LSTLNVSMNNITRSIPL-EIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQL 230
S + + + L LN + + + + L L L N+L
Sbjct: 22 GSQQALDLKGLRSDPDLVAQNIDVVLN----RRSSMAATLRIIEENIPELLSLNLSNNRL 77
Query: 231 IGH--LPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGK 288
+ S + L+ LNLS N S LKL L L +
Sbjct: 78 YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137
Query: 289 LVQLSELELSHNFL-GREIPSQI 310
+ + E L G E+P I
Sbjct: 138 ISAIRERFPKLLRLDGHELPPPI 160
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 2e-04
Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%)
Query: 213 EFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLD 272
++ +L LRG + I + + +L + + ++ S N L + L +L L
Sbjct: 13 QYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLL 69
Query: 273 LSKYQFIQELPKELGKLVQLSELELSHNFLGREIPSQICSMECCEVFCTITNSVPTNNFL 332
++ + + L L+EL L++N L E+ + P N
Sbjct: 70 VNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKK 128
Query: 333 NC 334
+
Sbjct: 129 HY 130
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (90), Expect = 5e-04
Identities = 28/135 (20%), Positives = 42/135 (31%), Gaps = 7/135 (5%)
Query: 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179
N + L G + I +D SDN + +L TL V+
Sbjct: 16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVNN 72
Query: 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVG-KIPKEFGKLNSLTKLILRG---NQLIGHLP 235
N I R L L E L+ N +V L SLT L + +
Sbjct: 73 NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 132
Query: 236 SEIGSLTKLEFLNLS 250
I + ++ L+
Sbjct: 133 YVIYKVPQVRVLDFQ 147
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 0.001
Identities = 20/132 (15%), Positives = 34/132 (25%), Gaps = 8/132 (6%)
Query: 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFE 60
N REL LR + I L + N+ R L L+ L +
Sbjct: 16 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLVNN 72
Query: 61 NNLSGSIPPSVG---NLMLTVLALENNHFTGNLRHNICRNGALERVIVGGNHFRGP--IP 115
N + +L +L + G+L I+
Sbjct: 73 NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 132
Query: 116 KCLRNCPNLVRI 127
+ P + +
Sbjct: 133 YVIYKVPQVRVL 144
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Score = 39.3 bits (90), Expect = 7e-04
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 212 KEFGKLNSLTKLILRGN-QLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHY 270
++ K+ L G I + + + +L + L LSTN + SL + L
Sbjct: 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRI 74
Query: 271 L 271
L
Sbjct: 75 L 75
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 39.9 bits (91), Expect = 7e-04
Identities = 37/312 (11%), Positives = 84/312 (26%), Gaps = 46/312 (14%)
Query: 1 NLTNLRELHLRDNYLTG----LIPTETWNLKSLVKLGLGGNQ----------FRGSLPSS 46
+++E+ L N + + + K L L +
Sbjct: 29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 88
Query: 47 VGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNGALERVIVG 106
+ L + L +N + + + + L +N A ++
Sbjct: 89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK----HTPLEHLYLHNNGLGPQAGAKIAR- 143
Query: 107 GNHFRGPIPKCLRNCPNLVRISLEGNNMR-GTISEAFGIYLNLTFLDISDNNFFGEIASN 165
+ K +N P L I N + G++ E + + L G
Sbjct: 144 -ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202
Query: 166 WGKCPKLSTLN------------VSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPK- 212
+ + ++ + + + L E L+ + +
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262
Query: 213 -----EFGKLNSLTKLILRGNQLIGHLPSEIGS-----LTKLEFLNLSTNRFSSL--IPE 260
+ L L L+ N++ + + + L FL L+ NRFS + +
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD 322
Query: 261 SLGNLLKLHYLD 272
+ +
Sbjct: 323 EIREVFSTRGRG 334
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 38.3 bits (87), Expect = 0.002
Identities = 38/336 (11%), Positives = 83/336 (24%), Gaps = 50/336 (14%)
Query: 4 NLRELHLRDNYLTG----LIPTETWNLKSLVKLGLGGNQFRG----SLPSSVGNLSSLRY 55
++ L+ + +T + S+ ++ L GN L ++ + L
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63
Query: 56 LFLFEN---NLSGSIPPSVGNLMLTVLALENNHFTGNLRHNIC-RNGALERVIVGGNHFR 111
+ + IP ++ L+ +L H + + +
Sbjct: 64 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123
Query: 112 GPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNF----FGEIASNWG 167
+ + +++ L + N E A +
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183
Query: 168 KCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIV---------GKIPKEFGKLN 218
L T+ + N I + +L + + +
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243
Query: 219 SLTKLILRGNQLIGHLPSEIG------SLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLD 272
+L +L L L + + L+ L L N +L ++
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID----- 298
Query: 273 LSKYQFIQELPKELGKLVQLSELELSHNFLGREIPS 308
K+ L LEL+ N E
Sbjct: 299 --------------EKMPDLLFLELNGNRFSEEDDV 320
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (85), Expect = 0.001
Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 2/103 (1%)
Query: 169 CPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKE-FGKLNSLTKLILRG 227
S L + + + L E + + + L L L +
Sbjct: 7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65
Query: 228 NQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHY 270
+ L P +L LNLS N SL +++ L
Sbjct: 66 SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL 108
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 37.1 bits (84), Expect = 0.003
Identities = 27/173 (15%), Positives = 56/173 (32%), Gaps = 7/173 (4%)
Query: 60 ENNLSGSIPPSVGNLMLTVLALENNHFTGNLRHNICRNG-ALERVIVGGNHFRGPIPKCL 118
L IP + T L L +N + L ++ + N G P
Sbjct: 17 GRGLK-EIPRDIPL-HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74
Query: 119 RNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVS 178
++ + L N ++ ++ F L L++ DN + ++ L++LN++
Sbjct: 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134
Query: 179 MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLI 231
N + L L + L+ P + + L ++
Sbjct: 135 SNPFNCNCHL-AWFAEWLRKKSLNGGAARCGAPSKVRDVQIKD---LPHSEFK 183
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 667 | |||
| d1jpaa_ | 299 | ephb2 receptor tyrosine kinase {Mouse (Mus musculu | 100.0 | |
| d1uwha_ | 276 | B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1sm2a_ | 263 | Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie | 100.0 | |
| d1nvra_ | 271 | Cell cycle checkpoint kinase chk1 {Human (Homo sap | 100.0 | |
| d2j4za1 | 263 | Aurora-related kinase 1 (aurora-2) {Human (Homo sa | 100.0 | |
| d2java1 | 269 | Serine/threonine-protein kinase Nek2 {Human (Homo | 100.0 | |
| d1yhwa1 | 293 | pak1 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1k2pa_ | 258 | Bruton's tyrosine kinase (Btk) {Human (Homo sapien | 100.0 | |
| d1qpca_ | 272 | Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax | 100.0 | |
| d2jfla1 | 288 | STE20-like serine/threonine-protein kinase, SLK {H | 100.0 | |
| d1opja_ | 287 | Abelsone tyrosine kinase (abl) {Mouse (Mus musculu | 100.0 | |
| d1t4ha_ | 270 | Protein kinase wnk1 {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1u59a_ | 285 | Tyrosine-protein kinase ZAP-70 {Human (Homo sapien | 100.0 | |
| d1mqba_ | 283 | epha2 receptor tyrosine kinase {Human (Homo sapien | 100.0 | |
| d1s9ja_ | 322 | Dual specificity mitogen-activated protein kinase | 100.0 | |
| d1rjba_ | 325 | Fl cytokine receptor {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1u5ra_ | 309 | Serine/threonine protein kinase TAO2 {Rat (Rattus | 100.0 | |
| d1a06a_ | 307 | Calmodulin-dependent protein kinase {Rat (Rattus n | 100.0 | |
| d1uu3a_ | 288 | 3-phosphoinositide dependent protein kinase-1 Pdk1 | 100.0 | |
| d1xbba_ | 277 | Tyrosine-protein kinase SYK {Human (Homo sapiens) | 100.0 | |
| d1o6la_ | 337 | Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1jksa_ | 293 | Death-associated protein kinase, Dap {Human (Homo | 100.0 | |
| d1koaa2 | 350 | Twitchin, kinase domain {Caenorhabditis elegans, p | 100.0 | |
| d1fmka3 | 285 | c-src tyrosine kinase {Human (Homo sapiens) [TaxId | 100.0 | |
| d1lufa_ | 301 | Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax | 100.0 | |
| d1fota_ | 316 | cAMP-dependent PK, catalytic subunit {Baker's yeas | 100.0 | |
| d1phka_ | 277 | gamma-subunit of glycogen phosphorylase kinase (Ph | 100.0 | |
| d1koba_ | 352 | Twitchin, kinase domain {California sea hare (Aply | 100.0 | |
| d1byga_ | 262 | Carboxyl-terminal src kinase (csk) {Human (Homo sa | 100.0 | |
| d1vjya_ | 303 | Type I TGF-beta receptor R4 {Human (Homo sapiens) | 100.0 | |
| d1mp8a_ | 273 | Focal adhesion kinase 1 (fak) {Human (Homo sapiens | 100.0 | |
| d1r0pa_ | 311 | Hepatocyte growth factor receptor, c-MET {Human (H | 100.0 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 100.0 | |
| d1xkka_ | 317 | EGF receptor tyrosine kinase, Erbb-1 {Human (Homo | 100.0 | |
| d1u46a_ | 273 | Activated CDC42 kinase 1, ACK1 {Human (Homo sapien | 100.0 | |
| d2ozaa1 | 335 | MAP kinase activated protein kinase 2, mapkap2 {Hu | 100.0 | |
| d1xjda_ | 320 | Protein kinase C, theta type {Human (Homo sapiens) | 100.0 | |
| d1fvra_ | 309 | Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ua2a_ | 299 | Cell division protein kinase 7, CDK7 {Human (Homo | 100.0 | |
| d1rdqe_ | 350 | cAMP-dependent PK, catalytic subunit {Mouse (Mus m | 100.0 | |
| d1tkia_ | 321 | Titin, kinase domain {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1ywna1 | 299 | Vascular endothelial growth factor receptor 2 (kdr | 100.0 | |
| d1t46a_ | 311 | c-KIT receptor {Human (Homo sapiens) [TaxId: 9606] | 100.0 | |
| d1p4oa_ | 308 | Insulin-like growth factor 1 receptor {Human (Homo | 100.0 | |
| d1gz8a_ | 298 | Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T | 100.0 | |
| d1fgka_ | 299 | Fibroblast growth factor receptor 1 {Human (Homo s | 100.0 | |
| d1o6ya_ | 277 | Mycobacterial protein kinase PknB, catalytic domai | 100.0 | |
| d1ob3a_ | 286 | Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) | 100.0 | |
| d1xwsa_ | 273 | Proto-oncogene serine/threonine-protein kinase Pim | 100.0 | |
| d1vzoa_ | 322 | Ribosomal protein S6 kinase alpha 5, Msk1 {Human ( | 100.0 | |
| d1blxa_ | 305 | Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T | 100.0 | |
| d3blha1 | 318 | Cell division protein kinase 9, CDK9 {Human (Homo | 100.0 | |
| d1unla_ | 292 | Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T | 100.0 | |
| d1cm8a_ | 346 | MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1pmea_ | 345 | MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606 | 100.0 | |
| d3bqca1 | 328 | Protein kinase CK2, alpha subunit {Rattus norvegic | 100.0 | |
| d1q5ka_ | 350 | Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho | 100.0 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 100.0 | |
| d2gfsa1 | 348 | MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606] | 100.0 | |
| d1ckia_ | 299 | Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax | 100.0 | |
| d1csna_ | 293 | Casein kinase-1, CK1 {Fission yeast (Schizosacchar | 100.0 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.97 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.88 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.88 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.75 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.73 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.71 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.68 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.68 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.65 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.64 | |
| d1zara2 | 191 | Rio2 serine protein kinase C-terminal domain {Arch | 99.62 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.56 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.54 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.51 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.47 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.46 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.42 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.41 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.41 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.41 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.25 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.2 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.17 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.16 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.27 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.23 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.34 | |
| d1j7la_ | 263 | Type IIIa 3',5"-aminoglycoside phosphotransferase | 97.29 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.22 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.3 | |
| d1nd4a_ | 255 | Aminoglycoside 3'-phosphotransferase IIa (Kanamyci | 96.28 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.15 | |
| d2pula1 | 392 | Methylthioribose kinase MtnK {Bacillus subtilis [T | 93.37 | |
| d1zyla1 | 325 | RdoA {Escherichia coli [TaxId: 562]} | 86.3 |
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.4e-43 Score=357.72 Aligned_cols=229 Identities=25% Similarity=0.469 Sum_probs=161.4
Q ss_pred CCcCcceeecccCeEEEEEEeCC-C---ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPS-K---EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~-~---~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
+|+..+.||+|+||+||+|+.+. + ..||||++..... ....+.|.+|+++|++++|||||+++|+|.+++..+
T Consensus 27 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~ 103 (299)
T d1jpaa_ 27 CVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYT---EKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVM 103 (299)
T ss_dssp GEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCC---HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCE
T ss_pred hcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccC---HHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEE
Confidence 34456789999999999998753 2 2588888764322 234567999999999999999999999999999999
Q ss_pred EEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 498 LIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
+|||||++|+|.+++..... ..|.||||+|||+|.++++||+|||+|+.......
T Consensus 104 iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~ 183 (299)
T d1jpaa_ 104 IITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTS 183 (299)
T ss_dssp EEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-----------
T ss_pred EEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCCcEEECCcccceEccCCCC
Confidence 99999999999887754321 12449999999999999999999999997654322
Q ss_pred C-----cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCC
Q 042735 553 N-----WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPS 620 (667)
Q Consensus 553 ~-----~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (667)
. .....||+.||||| |+.++|||||||++|||+| |+.||..... ...... +.. +.+++.+
T Consensus 184 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~----~~~~~~-i~~--~~~~~~~- 255 (299)
T d1jpaa_ 184 DPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTN----QDVINA-IEQ--DYRLPPP- 255 (299)
T ss_dssp ------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH----HHHHHH-HHT--TCCCCCC-
T ss_pred cceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCH----HHHHHH-HHc--CCCCCCC-
Confidence 1 12245899999998 6779999999999999998 8999853321 111111 111 1122211
Q ss_pred CchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhcc
Q 042735 621 PDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFSY 664 (667)
Q Consensus 621 ~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~~ 664 (667)
... ...+.+++.+||+.||++||||+||++.|.......+.
T Consensus 256 ~~~---~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~~p~s 296 (299)
T d1jpaa_ 256 MDC---PSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRNPNS 296 (299)
T ss_dssp TTC---CHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGGG
T ss_pred ccc---hHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcChhh
Confidence 111 22466788899999999999999999998776554443
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-43 Score=355.67 Aligned_cols=228 Identities=25% Similarity=0.411 Sum_probs=167.6
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|...+.||+|+||+||+|++++ .||||++...... ....+.|.+|++++++++|||||+++|++.+ +..++||
T Consensus 8 ~~~~~~~~lG~G~fg~Vy~~~~~~--~vAvK~~~~~~~~--~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~lv~ 82 (276)
T d1uwha_ 8 GQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPT--PQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVT 82 (276)
T ss_dssp TCCCCCSEEEECSSCEEEEEESSS--EEEEEECCCSSCC--TTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred ccEEEEEEEeeCCCcEEEEEEECC--EEEEEEEEcccCC--HHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEEEEE
Confidence 578888999999999999998754 4999998654322 2345689999999999999999999999754 5689999
Q ss_pred EecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCC--CC
Q 042735 501 EYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS--SN 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~--~~ 553 (667)
|||++|+|.+.+..... ..|.||||+|||+|.++.+||+|||+|+...... ..
T Consensus 83 Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~ 162 (276)
T d1uwha_ 83 QWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQ 162 (276)
T ss_dssp ECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSCC---------
T ss_pred ecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEccccceeeccccCCccc
Confidence 99999999998854211 1244999999999999999999999998765432 22
Q ss_pred cccccccccccCCC---------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchH
Q 042735 554 WSALVGTYRYVAPD---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQ 624 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE---------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (667)
.+...||+.||||| |+.++|||||||++|||+||+.||...... .............+.........
T Consensus 163 ~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~- 238 (276)
T d1uwha_ 163 FEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR---DQIIFMVGRGYLSPDLSKVRSNC- 238 (276)
T ss_dssp ---CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH---HHHHHHHHHTSCCCCGGGSCTTC-
T ss_pred ccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChH---HHHHHHHhcCCCCCcchhccccc-
Confidence 34578999999999 456899999999999999999998643211 11111111122222221111111
Q ss_pred HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 625 GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 625 ~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
...+.+++.+||+.||++||||+||+++|+...
T Consensus 239 --~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~ 271 (276)
T d1uwha_ 239 --PKAMKRLMAECLKKKRDERPLFPQILASIELLA 271 (276)
T ss_dssp --CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence 224667888999999999999999999988654
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-43 Score=351.15 Aligned_cols=223 Identities=25% Similarity=0.432 Sum_probs=162.8
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|+..+.||+|+||+||+|++.+++.||||++..... ..++|.+|++++++++|||||+++|+|.+++..++||
T Consensus 5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~-----~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~ 79 (263)
T d1sm2a_ 5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-----SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVF 79 (263)
T ss_dssp SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSS-----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcC-----cHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEE
Confidence 46788899999999999999998888999999865322 2357999999999999999999999999999999999
Q ss_pred EecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC-c
Q 042735 501 EYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN-W 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~-~ 554 (667)
||+++|+|.+++..... ..|.||||+|||+|.++.+||+|||+|+........ .
T Consensus 80 E~~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~ 159 (263)
T d1sm2a_ 80 EFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSS 159 (263)
T ss_dssp ECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC-------------
T ss_pred EecCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchheeccCCCceee
Confidence 99999999988754321 124499999999999999999999999876543322 2
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhC-CCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKG-KHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
....||+.||||| |+.|+|||||||++|||+|| ++|+.... ...... .+.....+..|... .
T Consensus 160 ~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~----~~~~~~-~i~~~~~~~~p~~~------~ 228 (263)
T d1sm2a_ 160 TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS----NSEVVE-DISTGFRLYKPRLA------S 228 (263)
T ss_dssp -----CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCC----HHHHHH-HHHHTCCCCCCTTS------C
T ss_pred cceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCC----HHHHHH-HHHhcCCCCCcccc------C
Confidence 3457999999998 67899999999999999996 44443211 111111 11111122222211 1
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.++.+++.+||+.||++||||+||+++|....
T Consensus 229 ~~l~~li~~cl~~~p~~Rps~~~il~~L~~i~ 260 (263)
T d1sm2a_ 229 THVYQIMNHCWKERPEDRPAFSRLLRQLAEIA 260 (263)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHhHCcCHHHHHHHHHHHH
Confidence 25678889999999999999999999988653
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.8e-44 Score=355.65 Aligned_cols=229 Identities=24% Similarity=0.341 Sum_probs=174.0
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
+++|+..+.||+|+||+||+|+. .+++.||||++...... ...+.|.+|++++++++|||||++++++.+++..|+
T Consensus 4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~---~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~i 80 (271)
T d1nvra_ 4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV---DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYL 80 (271)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC----------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcc---hHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEE
Confidence 46899999999999999999986 46889999998653221 223568999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCC--C
Q 042735 499 IYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS--S 552 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~--~ 552 (667)
|||||++|+|.+.+..... ..|.||||+|||++.++.+||+|||+|+...... .
T Consensus 81 vmEy~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~ 160 (271)
T d1nvra_ 81 FLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER 160 (271)
T ss_dssp EEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEEC
T ss_pred EEeccCCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheeeccCCccc
Confidence 9999999999988864321 1245999999999999999999999999765332 2
Q ss_pred CcccccccccccCCC------C-CCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 553 NWSALVGTYRYVAPD------Y-RKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~-~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
..+..+||+.||||| | +.++||||+||++|||+||+.||....... . ...... . ......+...
T Consensus 161 ~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~--~-~~~~~~-~--~~~~~~~~~~--- 231 (271)
T d1nvra_ 161 LLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSC--Q-EYSDWK-E--KKTYLNPWKK--- 231 (271)
T ss_dssp CBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTS--H-HHHHHH-T--TCTTSTTGGG---
T ss_pred cccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHH--H-HHHHHh-c--CCCCCCcccc---
Confidence 245578999999999 3 467999999999999999999986433211 0 000000 0 1111111111
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
...++.+++.+||+.||++|||++|++++.||...
T Consensus 232 ~s~~~~~li~~~L~~dP~~R~t~~eil~hpwf~~~ 266 (271)
T d1nvra_ 232 IDSAPLALLHKILVENPSARITIPDIKKDRWYNKP 266 (271)
T ss_dssp SCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCC
T ss_pred CCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhCcC
Confidence 12245678889999999999999999999998643
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-43 Score=350.38 Aligned_cols=225 Identities=24% Similarity=0.395 Sum_probs=175.7
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
+++|+..+.||+|+||+||+|+.+ +++.||||++..... ......+.+.+|++++++++|||||++++++.+++..|+
T Consensus 5 l~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~-~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i 83 (263)
T d2j4za1 5 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQL-EKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL 83 (263)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHH-HHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred hhHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHc-cChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEE
Confidence 468999999999999999999874 578899998753211 111234578999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||||++|+|.+.+.... ...|.||||+|||++.++.+||+|||+|+..... ..
T Consensus 84 vmEy~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~--~~ 161 (263)
T d2j4za1 84 ILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--RR 161 (263)
T ss_dssp EEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCC--CC
T ss_pred EEeecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccceeeecCCC--cc
Confidence 999999999988775422 1224599999999999999999999999876533 23
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
...+||+.||||| |+.++|||||||++|||+||+.||..... ........ ...+..|...+ .
T Consensus 162 ~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~----~~~~~~i~--~~~~~~p~~~s------~ 229 (263)
T d2j4za1 162 TTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY----QETYKRIS--RVEFTFPDFVT------E 229 (263)
T ss_dssp EETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH----HHHHHHHH--TTCCCCCTTSC------H
T ss_pred cccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCH----HHHHHHHH--cCCCCCCccCC------H
Confidence 4578999999999 78899999999999999999999863321 11111110 11122222222 2
Q ss_pred HHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 629 SIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
++.+++.+||+.||++|||++|+++|.|+..
T Consensus 230 ~~~~li~~~L~~dp~~R~t~~eil~hp~~~~ 260 (263)
T d2j4za1 230 GARDLISRLLKHNPSQRPMLREVLEHPWITA 260 (263)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHTCHHHHH
T ss_pred HHHHHHHHHccCCHhHCcCHHHHHcCcCcCC
Confidence 4567888999999999999999999999864
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-43 Score=354.30 Aligned_cols=223 Identities=25% Similarity=0.417 Sum_probs=163.0
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe--CCceE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH--ARHSI 497 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~--~~~~~ 497 (667)
++|+..+.||+|+||+||+|+. .+++.||||++...... ....+.|.+|++++++++|||||++++++.+ .+..|
T Consensus 4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~--~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~ 81 (269)
T d2java1 4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMT--EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLY 81 (269)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSC--HHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEE
T ss_pred hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCC--HHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEE
Confidence 6899999999999999999986 56889999998764332 2345679999999999999999999999965 45689
Q ss_pred EEEEecCCCChHHHhccc-----------------------------c----CCcccccccCCeeecCCCceEEeccccc
Q 042735 498 LIYEYLKRGSLATNLSND-----------------------------A----AAEELDISSKNVLLDLEHKAHVSDFGIA 544 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~-----------------------------~----~~~~~dlk~~NiLld~~~~~kl~DFGla 544 (667)
+|||||++|+|.+.+... . ...|.||||+|||++.++.+||+|||+|
T Consensus 82 ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a 161 (269)
T d2java1 82 IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA 161 (269)
T ss_dssp EEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHH
T ss_pred EEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccce
Confidence 999999999998766321 0 1336699999999999999999999999
Q ss_pred ccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCC
Q 042735 545 KFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPP 618 (667)
Q Consensus 545 ~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (667)
+.........+..+||+.||||| |+.++|||||||++|||+||+.||..... ...... +...-.+.++.
T Consensus 162 ~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~----~~~~~~-i~~~~~~~~~~ 236 (269)
T d2java1 162 RILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ----KELAGK-IREGKFRRIPY 236 (269)
T ss_dssp HHC-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH----HHHHHH-HHHTCCCCCCT
T ss_pred eecccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCH----HHHHHH-HHcCCCCCCCc
Confidence 98765554456688999999999 68899999999999999999999864321 111111 11111112222
Q ss_pred CCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 619 PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
..+ .++.+++.+||+.||++|||++|++++.|
T Consensus 237 ~~s------~~l~~li~~~L~~dp~~Rps~~ell~hp~ 268 (269)
T d2java1 237 RYS------DELNEIITRMLNLKDYHRPSVEEILENPL 268 (269)
T ss_dssp TSC------HHHHHHHHHHTCSSGGGSCCHHHHHTSTT
T ss_pred ccC------HHHHHHHHHHcCCChhHCcCHHHHHhCCc
Confidence 222 24667888999999999999999998765
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-43 Score=355.13 Aligned_cols=226 Identities=24% Similarity=0.420 Sum_probs=176.9
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||+||+|+. .+|+.||||++..... ...+.+.+|++++++++|||||++++++.+.+..|+|
T Consensus 20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~----~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv 95 (293)
T d1yhwa1 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQ----PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV 95 (293)
T ss_dssp TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGC----SCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccC----hHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEE
Confidence 3689999999999999999986 5688999998864321 2245799999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 500 YEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
||||++|+|.+.+..... ..|.||||+|||++.++++||+|||+|+...........
T Consensus 96 mEy~~gg~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~~~~ 175 (293)
T d1yhwa1 96 MEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST 175 (293)
T ss_dssp EECCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCC
T ss_pred EEecCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeeccccccccc
Confidence 999999999887654321 224599999999999999999999999987655555566
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISI 630 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (667)
.+||+.||||| |+.++||||+||++|||+||+.||...... ......... -.+.++.+ + .....+
T Consensus 176 ~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~----~~~~~~~~~-~~~~~~~~-~---~~s~~~ 246 (293)
T d1yhwa1 176 MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL----RALYLIATN-GTPELQNP-E---KLSAIF 246 (293)
T ss_dssp CCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH----HHHHHHHHH-CSCCCSSG-G---GSCHHH
T ss_pred cccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHH----HHHHHHHhC-CCCCCCCc-c---cCCHHH
Confidence 78999999999 688999999999999999999998532211 111111111 11111111 1 112346
Q ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 631 MEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 631 ~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.+++.+||+.||++|||++|+++|.|+..
T Consensus 247 ~~li~~~L~~dP~~R~s~~eil~Hp~~~~ 275 (293)
T d1yhwa1 247 RDFLNRCLDMDVEKRGSAKELLQHQFLKI 275 (293)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHTTCGGGGG
T ss_pred HHHHHHHccCChhHCcCHHHHhcCHhhCC
Confidence 67888999999999999999999998853
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-42 Score=343.77 Aligned_cols=221 Identities=23% Similarity=0.419 Sum_probs=174.0
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|+..+.||+|+||+||+|+++++..||||+++.... ..++|.+|+.++++++|||||+++|+|.+.+..++||
T Consensus 4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~-----~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~ 78 (258)
T d1k2pa_ 4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-----SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIIT 78 (258)
T ss_dssp CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS-----CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEE
T ss_pred HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcC-----CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEE
Confidence 58899999999999999999998888999999865322 2357999999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC-Cc
Q 042735 501 EYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-NW 554 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~~ 554 (667)
||+++|+|.+.+.... ...|.||||+|||+|.++.+||+|||+|+....... ..
T Consensus 79 Ey~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~ 158 (258)
T d1k2pa_ 79 EYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSS 158 (258)
T ss_dssp ECCTTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCC
T ss_pred EccCCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhheeccCCCceee
Confidence 9999999987754321 122459999999999999999999999987654432 22
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
....||+.||||| |+.|+|||||||++|||+| |+.||..... ..... .+.....+..|... .
T Consensus 159 ~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~----~~~~~-~i~~~~~~~~p~~~------~ 227 (258)
T d1k2pa_ 159 VGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN----SETAE-HIAQGLRLYRPHLA------S 227 (258)
T ss_dssp CCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCH----HHHHH-HHHTTCCCCCCTTC------C
T ss_pred cccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCH----HHHHH-HHHhCCCCCCcccc------c
Confidence 3467999999999 7889999999999999998 8999864321 11111 11111111122111 2
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.++.+++.+||+.||++||||+||+++|..
T Consensus 228 ~~l~~li~~cl~~dP~~RPt~~eil~~L~d 257 (258)
T d1k2pa_ 228 EKVYTIMYSCWHEKADERPTFKILLSNILD 257 (258)
T ss_dssp HHHHHHHHHTTCSSGGGSCCHHHHHHHHHC
T ss_pred HHHHHHHHHHccCCHhHCcCHHHHHHHhhC
Confidence 356788899999999999999999999854
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-42 Score=347.29 Aligned_cols=221 Identities=21% Similarity=0.354 Sum_probs=168.0
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|+..+.||+|+||+||+|+++++..||||++..... ..+.|.+|++++++++|||||+++|++.+ +..++||
T Consensus 13 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~-----~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~~~~iv~ 86 (272)
T d1qpca_ 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-----SPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIIT 86 (272)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-----CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEE
T ss_pred HHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcC-----CHHHHHHHHHHHHhCCCCCEeEEEeeecc-CCeEEEE
Confidence 56788889999999999999998888999999865321 24579999999999999999999998854 5679999
Q ss_pred EecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC-C
Q 042735 501 EYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-N 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~ 553 (667)
||+++|+|.+.+.... ...|.||||+|||+|.++.+||+|||+|+....... .
T Consensus 87 Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~ 166 (272)
T d1qpca_ 87 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTA 166 (272)
T ss_dssp ECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEEC
T ss_pred EeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceEEccCCcccc
Confidence 9999999988664321 112459999999999999999999999998754332 2
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
.+...||+.||||| |+.++|||||||++|||+||+.|+.... ........+.....+..+...+
T Consensus 167 ~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~----~~~~~~~~i~~~~~~~~p~~~~------ 236 (272)
T d1qpca_ 167 REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM----TNPEVIQNLERGYRMVRPDNCP------ 236 (272)
T ss_dssp CTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTC----CHHHHHHHHHTTCCCCCCTTCC------
T ss_pred ccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCC----CHHHHHHHHHhcCCCCCcccCh------
Confidence 34467999999999 6889999999999999999766542111 1111111111212222222222
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.++.+++.+||+.+|++||||+||++.|..
T Consensus 237 ~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~ 266 (272)
T d1qpca_ 237 EELYQLMRLCWKERPEDRPTFDYLRSVLED 266 (272)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHhHCcCHHHHHHHhhh
Confidence 246778889999999999999999997653
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-43 Score=354.96 Aligned_cols=225 Identities=20% Similarity=0.333 Sum_probs=172.8
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
+.|+..+.||+|+||+||+|+. .++..||||++..... ...+.|.+|++++++++|||||++++++.+++..++|
T Consensus 12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~----~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lv 87 (288)
T d2jfla1 12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSE----EELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWIL 87 (288)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSS----GGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCH----HHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEE
Confidence 4578889999999999999986 4578899999865322 2335689999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||++|+|.+.+.... ...|.||||+|||++.++.+||+|||+|+.........
T Consensus 88 mEy~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~~~ 167 (288)
T d2jfla1 88 IEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRR 167 (288)
T ss_dssp EECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHHHH
T ss_pred EecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhccCCCcccc
Confidence 99999999988764321 11245999999999999999999999998654332223
Q ss_pred ccccccccccCCC-----------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 555 SALVGTYRYVAPD-----------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 555 ~~~~Gt~~y~aPE-----------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
...+||+.||||| |+.++|||||||++|||+||+.||...... ....... ..-.+.+..+
T Consensus 168 ~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~----~~~~~i~-~~~~~~~~~~---- 238 (288)
T d2jfla1 168 DSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPM----RVLLKIA-KSEPPTLAQP---- 238 (288)
T ss_dssp TCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGG----GHHHHHH-HSCCCCCSSG----
T ss_pred cccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHH----HHHHHHH-cCCCCCCCcc----
Confidence 4578999999999 467899999999999999999998643211 1111111 1111111111
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.....++.+++.+||+.||++|||++|+++|.|+.
T Consensus 239 ~~~s~~~~~li~~~L~~dp~~R~t~~ell~hp~~~ 273 (288)
T d2jfla1 239 SRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFVT 273 (288)
T ss_dssp GGSCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGC
T ss_pred ccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccC
Confidence 11223567888899999999999999999998875
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.5e-42 Score=348.04 Aligned_cols=223 Identities=24% Similarity=0.384 Sum_probs=171.1
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||+||+|.+. +++.||||++..... ..++|.+|++++++++|||||+++|+|.+++..++|
T Consensus 17 ~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~-----~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv 91 (287)
T d1opja_ 17 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-----EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII 91 (287)
T ss_dssp GGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCS-----CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred HHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccc-----hHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEE
Confidence 57888899999999999999875 578899999865321 245799999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 500 YEYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
||||++|+|.+.+.... ...|.||||+|||+|.++.+||+|||+|+........
T Consensus 92 ~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~ 171 (287)
T d1opja_ 92 TEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT 171 (287)
T ss_dssp EECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSE
T ss_pred eecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccceeecCCCCce
Confidence 99999999998875321 1124599999999999999999999999976544332
Q ss_pred -cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 -WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 -~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.+...||+.||||| |+.|+|||||||++|||+||+.|+..... .......+.....+..+...+
T Consensus 172 ~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~----~~~~~~~i~~~~~~~~~~~~~----- 242 (287)
T d1opja_ 172 AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID----LSQVYELLEKDYRMERPEGCP----- 242 (287)
T ss_dssp EETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCC----HHHHHHHHHTTCCCCCCTTCC-----
T ss_pred eeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcch----HHHHHHHHhcCCCCCCCccch-----
Confidence 23346899999999 68899999999999999998776532111 111111111111222222222
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.++.+++.+||+.||++||||+||++.|...
T Consensus 243 -~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~ 273 (287)
T d1opja_ 243 -EKVYELMRACWQWNPSDRPSFAEIHQAFETM 273 (287)
T ss_dssp -HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHT
T ss_pred -HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 2467888999999999999999999887643
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-42 Score=343.09 Aligned_cols=221 Identities=21% Similarity=0.359 Sum_probs=166.3
Q ss_pred cCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe----CCceEE
Q 042735 424 DAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH----ARHSIL 498 (667)
Q Consensus 424 ~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~----~~~~~l 498 (667)
...+.||+|+||+||+|... ++..||||++...... ....+.|.+|++++++++|||||+++|++.+ ....++
T Consensus 12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~--~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~i 89 (270)
T d1t4ha_ 12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT--KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL 89 (270)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCC--HHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEE
Confidence 44567999999999999874 5778999988653322 2345679999999999999999999999875 345799
Q ss_pred EEEecCCCChHHHhccc------------------------cC--CcccccccCCeeec-CCCceEEecccccccccCCC
Q 042735 499 IYEYLKRGSLATNLSND------------------------AA--AEELDISSKNVLLD-LEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~------------------------~~--~~~~dlk~~NiLld-~~~~~kl~DFGla~~~~~~~ 551 (667)
||||+++|+|.+.+... .. ..|.||||+|||++ +++.+||+|||+|+.....
T Consensus 90 vmE~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~- 168 (270)
T d1t4ha_ 90 VTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS- 168 (270)
T ss_dssp EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTT-
T ss_pred EEeCCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCC-
Confidence 99999999998766431 11 34669999999996 5899999999999865432
Q ss_pred CCcccccccccccCCC-----CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 552 SNWSALVGTYRYVAPD-----YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE-----~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....+||+.||||| |+.++|||||||++|||+||+.||..... ...... .+.....+...+ ...
T Consensus 169 -~~~~~~GT~~Y~aPE~~~~~~~~~~DIwSlGvilyel~~g~~Pf~~~~~----~~~~~~---~i~~~~~~~~~~--~~~ 238 (270)
T d1t4ha_ 169 -FAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQN----AAQIYR---RVTSGVKPASFD--KVA 238 (270)
T ss_dssp -SBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSS----HHHHHH---HHTTTCCCGGGG--GCC
T ss_pred -ccCCcccCccccCHHHhCCCCCCcCchhhHHHHHHHHHHCCCCCCCccc----HHHHHH---HHHcCCCCcccC--ccC
Confidence 334678999999999 78899999999999999999999853221 111111 111111111100 111
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..++.+++.+||+.||++|||++|+++|.||
T Consensus 239 ~~~~~~li~~~l~~dp~~R~s~~ell~Hp~f 269 (270)
T d1t4ha_ 239 IPEVKEIIEGCIRQNKDERYSIKDLLNHAFF 269 (270)
T ss_dssp CHHHHHHHHHHSCSSGGGSCCHHHHHTSGGG
T ss_pred CHHHHHHHHHHccCCHhHCcCHHHHhCCccc
Confidence 2246788899999999999999999999887
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.7e-42 Score=343.21 Aligned_cols=223 Identities=26% Similarity=0.405 Sum_probs=167.9
Q ss_pred cCCcCcce-eecccCeEEEEEEeC---CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYC-IGSGRHGSVYRAELP---SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~-lg~g~~g~vy~~~~~---~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
++|..... ||+|+||+||+|.++ ++..||||++.... .....++|.+|+++|++++|||||+++|++.+ +..
T Consensus 8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~---~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~ 83 (285)
T d1u59a_ 8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT---EKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EAL 83 (285)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC---CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSE
T ss_pred cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhc---CHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeE
Confidence 34555554 999999999999764 34479999986532 23445789999999999999999999999865 568
Q ss_pred EEEEEecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
|+|||||++|+|.+++..... ..|.||||+|||++.++.+||+|||+|+......
T Consensus 84 ~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~ 163 (285)
T d1u59a_ 84 MLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADD 163 (285)
T ss_dssp EEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCS
T ss_pred EEEEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhhcccccc
Confidence 999999999999988754311 1134999999999999999999999999765433
Q ss_pred C---CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 552 S---NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 552 ~---~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
. ..+...||+.||||| |+.++|||||||++|||+| |+.||..... ..... .+.....+..|...+
T Consensus 164 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~----~~~~~-~i~~~~~~~~p~~~~ 238 (285)
T d1u59a_ 164 SYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG----PEVMA-FIEQGKRMECPPECP 238 (285)
T ss_dssp CEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT----HHHHH-HHHTTCCCCCCTTCC
T ss_pred cccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCH----HHHHH-HHHcCCCCCCCCcCC
Confidence 2 223457999999999 6789999999999999998 8999864321 11111 111111222222222
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.++.+++.+||+.+|++||||.+|.+.|...
T Consensus 239 ------~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~ 269 (285)
T d1u59a_ 239 ------PELYALMSDCWIYKWEDRPDFLTVEQRMRAC 269 (285)
T ss_dssp ------HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 2466788899999999999999998877643
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-41 Score=342.15 Aligned_cols=228 Identities=22% Similarity=0.370 Sum_probs=163.7
Q ss_pred cCCcCcceeecccCeEEEEEEeCCC-----ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSK-----EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~-----~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
+.|+..++||+|+||+||+|.++.+ ..||||++..... ....++|.+|++++++++|||||+++|++.+.+.
T Consensus 7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~---~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~ 83 (283)
T d1mqba_ 7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYT---EKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKP 83 (283)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccC---hHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCc
Confidence 4678889999999999999987542 3699999865332 2345679999999999999999999999999999
Q ss_pred eEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
.++|||||.+|++.+.+.... ...|.||||+|||+|.++.+||+|||+|+.....
T Consensus 84 ~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~ 163 (283)
T d1mqba_ 84 MMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD 163 (283)
T ss_dssp EEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC-------
T ss_pred eEEEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccchhhcccCC
Confidence 999999999999987654321 1224599999999999999999999999976543
Q ss_pred CCC---cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 551 SSN---WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 551 ~~~---~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
... .....||+.||||| |+.++|||||||++|||+||+.|+.... ....... .+.....+..+..
T Consensus 164 ~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~---~~~~~~~-~i~~~~~~~~~~~-- 237 (283)
T d1mqba_ 164 PEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL---SNHEVMK-AINDGFRLPTPMD-- 237 (283)
T ss_dssp ----------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC---CHHHHHH-HHHTTCCCCCCTT--
T ss_pred CccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccC---CHHHHHH-HHhccCCCCCchh--
Confidence 221 23356899999999 6789999999999999999766643211 1111111 1111112222211
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
....+.+++.+||+.+|++||||.||++.|......
T Consensus 238 ----~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~ 273 (283)
T d1mqba_ 238 ----CPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA 273 (283)
T ss_dssp ----CBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred ----hHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhC
Confidence 123567888999999999999999999988765443
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-42 Score=354.17 Aligned_cols=235 Identities=21% Similarity=0.340 Sum_probs=174.8
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
-++|+..+.||+|+||+||+|+. .+++.||+|++..... ....+.+.+|++++++++|||||+++++|.+++..++
T Consensus 5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~---~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~i 81 (322)
T d1s9ja_ 5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIK---PAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISI 81 (322)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCC---TTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEE
T ss_pred ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhC---HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 36899999999999999999986 4688999999865432 2234679999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 499 IYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
|||||++|+|.+.+.... ...|.||||+|||++.++++||+|||+|+......
T Consensus 82 VmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~-- 159 (322)
T d1s9ja_ 82 CMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM-- 159 (322)
T ss_dssp EEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHT--
T ss_pred EEEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccccCCCc--
Confidence 999999999988764321 23356999999999999999999999999764322
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCC----------CChhhh----h--------
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSIL----------PSPSVI----N-------- 605 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~----------~~~~~~----~-------- 605 (667)
.++.+||+.||||| |+.++||||+||++|||+||+.||....... ...... .
T Consensus 160 ~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (322)
T d1s9ja_ 160 ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSS 239 (322)
T ss_dssp C---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC------------------------
T ss_pred cccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccccccccccc
Confidence 34578999999999 8899999999999999999999985321100 000000 0
Q ss_pred ------------hhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 606 ------------MRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 606 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
........ ..++..+. .....++.+++.+||+.||++|||++|+++|.|+....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~s~~~~dli~~~L~~dP~~R~ta~e~L~Hpf~~~~~ 305 (322)
T d1s9ja_ 240 YGMDSRPPMAIFELLDYIVN-EPPPKLPS-GVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSD 305 (322)
T ss_dssp ------CCCCHHHHHHHHHT-SCCCCCCB-TTBCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHHH
T ss_pred cccccccchhHHHHHhhhhc-cCCccCcc-ccCCHHHHHHHHHHcCCChhHCcCHHHHhhCHhhCcCC
Confidence 00000000 00000000 00123567888999999999999999999999997544
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.9e-42 Score=350.78 Aligned_cols=223 Identities=24% Similarity=0.390 Sum_probs=169.6
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-C-----ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-K-----EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHA 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-~-----~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~ 493 (667)
++|+..+.||+|+||+||+|+... + ..||||++..... ......|.+|++++.++ +|||||+++|++.+.
T Consensus 37 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~ 113 (325)
T d1rjba_ 37 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKAD---SSEREALMSELKMMTQLGSHENIVNLLGACTLS 113 (325)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC---------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccC---HHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeC
Confidence 578889999999999999998643 2 2589998765322 22345799999999998 899999999999999
Q ss_pred CceEEEEEecCCCChHHHhccccC-----------------------------------------------CcccccccC
Q 042735 494 RHSILIYEYLKRGSLATNLSNDAA-----------------------------------------------AEELDISSK 526 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~~-----------------------------------------------~~~~dlk~~ 526 (667)
+..++|||||++|+|.+++..... ..|.||||+
T Consensus 114 ~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlKp~ 193 (325)
T d1rjba_ 114 GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAAR 193 (325)
T ss_dssp SSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGG
T ss_pred CeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCchh
Confidence 999999999999999998854310 113499999
Q ss_pred CeeecCCCceEEecccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccC
Q 042735 527 NVLLDLEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSI 597 (667)
Q Consensus 527 NiLld~~~~~kl~DFGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~ 597 (667)
|||++.++.+||+|||+|+........ .+...||+.||||| |+.++|||||||++|||+| |+.||.....
T Consensus 194 Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~- 272 (325)
T d1rjba_ 194 NVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV- 272 (325)
T ss_dssp GEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC-
T ss_pred ccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCH-
Confidence 999999999999999999876554332 23467899999999 7889999999999999998 8999863321
Q ss_pred CCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 598 LPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
.......+.....+..|...+ .++.+++.+||+.||++||||+||+++|.
T Consensus 273 ---~~~~~~~~~~~~~~~~p~~~~------~~l~~li~~cl~~dP~~RPt~~ei~~~L~ 322 (325)
T d1rjba_ 273 ---DANFYKLIQNGFKMDQPFYAT------EEIYIIMQSCWAFDSRKRPSFPNLTSFLG 322 (325)
T ss_dssp ---SHHHHHHHHTTCCCCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred ---HHHHHHHHhcCCCCCCCCcCC------HHHHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence 111111111222222222222 24678888999999999999999999985
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=8.5e-42 Score=347.15 Aligned_cols=223 Identities=24% Similarity=0.343 Sum_probs=171.7
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
.|+..+.||+|+||+||+|+. .++..||||++...... .....+.|.+|++++++++|||||+++|++.+.+..|+||
T Consensus 16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~-~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~ 94 (309)
T d1u5ra_ 16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQ-SNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 94 (309)
T ss_dssp HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSC-HHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhcc-CHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEE
Confidence 488889999999999999986 56788999998654322 2334567999999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 501 EYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
|||++|++...+.... ...|.||||+|||++.++.+||+|||+|+..... ..
T Consensus 95 E~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~----~~ 170 (309)
T d1u5ra_ 95 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA----NS 170 (309)
T ss_dssp ECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB----CC
T ss_pred EecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccccccCCC----Cc
Confidence 9999999875543221 1235699999999999999999999999875432 34
Q ss_pred ccccccccCCC---------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 557 LVGTYRYVAPD---------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 557 ~~Gt~~y~aPE---------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
.+||+.||||| |+.++|||||||++|||+||+.||..... ........ ....+..... .. .
T Consensus 171 ~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~----~~~~~~i~-~~~~~~~~~~--~~---s 240 (309)
T d1u5ra_ 171 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA----MSALYHIA-QNESPALQSG--HW---S 240 (309)
T ss_dssp CCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH----HHHHHHHH-HSCCCCCSCT--TS---C
T ss_pred cccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCH----HHHHHHHH-hCCCCCCCCC--CC---C
Confidence 68999999999 56789999999999999999999853221 11111111 1111111111 11 1
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..+.+++.+||+.||++|||++|+++|.|+..
T Consensus 241 ~~~~~li~~~L~~dP~~Rpt~~ell~Hp~~~~ 272 (309)
T d1u5ra_ 241 EYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLR 272 (309)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHTTCHHHHS
T ss_pred HHHHHHHHHHCcCChhHCcCHHHHHhCHHhcC
Confidence 24667888999999999999999999988753
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=3.3e-42 Score=350.17 Aligned_cols=227 Identities=25% Similarity=0.328 Sum_probs=158.4
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
+.|+..+.||+|+||+||+|+.. +++.||||++...... ...+.+.+|++++++++|||||++++++.+++..|+|
T Consensus 9 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~---~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lv 85 (307)
T d1a06a_ 9 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALE---GKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLI 85 (307)
T ss_dssp GTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC-------------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhh---hHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 45889999999999999999864 5788999998654321 2235688999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC------------------------CcccccccCCeeec---CCCceEEecccccccccCCCC
Q 042735 500 YEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLD---LEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld---~~~~~kl~DFGla~~~~~~~~ 552 (667)
||||++|+|.+.+..... ..|.||||+|||++ .++.+||+|||+|+......
T Consensus 86 mE~~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~- 164 (307)
T d1a06a_ 86 MQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGS- 164 (307)
T ss_dssp ECCCCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC-----------
T ss_pred EeccCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccCCC-
Confidence 999999999988864321 12459999999994 57899999999998765433
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
...+.+||+.||||| |+.++|||||||++|||+||+.||..... ..... .+.......+.+.....
T Consensus 165 ~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~----~~~~~----~i~~~~~~~~~~~~~~~ 236 (307)
T d1a06a_ 165 VLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDEND----AKLFE----QILKAEYEFDSPYWDDI 236 (307)
T ss_dssp --------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH----HHHHH----HHHTTCCCCCTTTTTTS
T ss_pred eeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCH----HHHHH----HHhccCCCCCCccccCC
Confidence 234578999999999 78899999999999999999999863221 11111 11111111111111111
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
...+.+++.+||+.||++|||++|+++|.|+..
T Consensus 237 s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~ 269 (307)
T d1a06a_ 237 SDSAKDFIRHLMEKDPEKRFTCEQALQHPWIAG 269 (307)
T ss_dssp CHHHHHHHHHHSCSSGGGSCCHHHHHHSTTTTS
T ss_pred CHHHHHHHHHHccCCHhHCcCHHHHhcCHhhCC
Confidence 224667888999999999999999999998864
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-42 Score=350.02 Aligned_cols=230 Identities=20% Similarity=0.286 Sum_probs=172.4
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||+||+|+. .+++.||||++..... ......+.+.+|++++++++|||||++++++.+.+..|+|
T Consensus 8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~-~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~iv 86 (288)
T d1uu3a_ 8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHI-IKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG 86 (288)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-HHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEE
T ss_pred CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHc-cCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEE
Confidence 5799999999999999999987 5688999998753211 0112245789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCC--CC
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS--SN 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~--~~ 553 (667)
||||++|+|.+.+.... ...|.||||+|||++.++.+||+|||+|+...... ..
T Consensus 87 mEy~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~ 166 (288)
T d1uu3a_ 87 LSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR 166 (288)
T ss_dssp ECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECC-------
T ss_pred EEccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEecccccceecccCCcccc
Confidence 99999999988765422 12245999999999999999999999999765432 22
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
....+||+.||||| |+.++||||+||++|||+||+.||..... ......... ....++...+
T Consensus 167 ~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~----~~~~~~i~~--~~~~~p~~~s------ 234 (288)
T d1uu3a_ 167 ANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE----YLIFQKIIK--LEYDFPEKFF------ 234 (288)
T ss_dssp ---CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHT--TCCCCCTTCC------
T ss_pred cccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCH----HHHHHHHHc--CCCCCCccCC------
Confidence 34568999999999 78899999999999999999999863221 111111111 1122232222
Q ss_pred HHHHHHHHhccccCCCCCCCHHHH------HHHHHHhhhhhc
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTI------TQQLLFSLVYFS 663 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev------~~~l~~~~~~~~ 663 (667)
.++.+++.+||+.||++|||++|+ .+|.||..+.|+
T Consensus 235 ~~~~~li~~~L~~dP~~R~t~~e~~~~~~i~~Hpff~~i~w~ 276 (288)
T d1uu3a_ 235 PKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWE 276 (288)
T ss_dssp HHHHHHHHTTSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCCT
T ss_pred HHHHHHHHHHccCCHhHCcCHHHHcCCHHHHcCCccCCCCHH
Confidence 245678889999999999999885 566666665544
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-41 Score=338.72 Aligned_cols=217 Identities=26% Similarity=0.398 Sum_probs=160.2
Q ss_pred ceeecccCeEEEEEEeCC---CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEec
Q 042735 427 YCIGSGRHGSVYRAELPS---KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEYL 503 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~~---~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey~ 503 (667)
+.||+|+||+||+|.++. ++.||||++..... .....++|.+|++++++++|||||+++|+|.+ +..++|||||
T Consensus 13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~--~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~ 89 (277)
T d1xbba_ 13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN--DPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMA 89 (277)
T ss_dssp EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-------CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECC
T ss_pred CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhC--CHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcC
Confidence 469999999999998643 45799999865332 22345679999999999999999999999865 5678999999
Q ss_pred CCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCCCC---ccc
Q 042735 504 KRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN---WSA 556 (667)
Q Consensus 504 ~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~---~~~ 556 (667)
++|+|.+++..... ..|.||||+|||++.++.+||+|||+|+........ ...
T Consensus 90 ~~g~L~~~l~~~~~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~ 169 (277)
T d1xbba_ 90 ELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTH 169 (277)
T ss_dssp TTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC---
T ss_pred CCCcHHHHHhhccCCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhhccccccccccccc
Confidence 99999988764321 124599999999999999999999999976543322 233
Q ss_pred ccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHHH
Q 042735 557 LVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLIS 629 (667)
Q Consensus 557 ~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (667)
..||+.||||| |+.++|||||||++|||+| |+.||..... ..... .+.....+..|...+ .+
T Consensus 170 ~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~----~~~~~-~i~~~~~~~~p~~~~------~~ 238 (277)
T d1xbba_ 170 GKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG----SEVTA-MLEKGERMGCPAGCP------RE 238 (277)
T ss_dssp -CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCH----HHHHH-HHHTTCCCCCCTTCC------HH
T ss_pred cCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCH----HHHHH-HHHcCCCCCCCcccC------HH
Confidence 57999999999 6789999999999999998 8999864321 11111 111111122222222 24
Q ss_pred HHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 630 IMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 630 ~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
+.+++.+||+.||++||||+||.+.|..
T Consensus 239 ~~~li~~cl~~dp~~RPs~~~i~~~L~~ 266 (277)
T d1xbba_ 239 MYDLMNLCWTYDVENRPGFAAVELRLRN 266 (277)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHhHCcCHHHHHHHhhC
Confidence 6678889999999999999999876543
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-41 Score=347.01 Aligned_cols=230 Identities=21% Similarity=0.315 Sum_probs=180.8
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
+++|+..+.||+|+||+||+|+. .+++.||||++.+.... .....+.+.+|+.+|++++|||||++++++.+.+..|+
T Consensus 4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~-~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~i 82 (337)
T d1o6la_ 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVII-AKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCF 82 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHH-HTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEE
T ss_pred hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhcc-CHHHHHHHHHHHHHHHhCCCCCEEEEEeeecccccccc
Confidence 57899999999999999999986 56889999998642110 11234578899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||||++|+|.+.+.... ...|.||||+|||+|.+|.+||+|||+|+.........
T Consensus 83 v~ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~~~ 162 (337)
T d1o6la_ 83 VMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM 162 (337)
T ss_dssp EEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCB
T ss_pred ceeccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeecccccccccCCccc
Confidence 999999999988775432 12245999999999999999999999999765555555
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
...+||+.||||| |+.++||||+||++|||+||+.||..... ......... -...+|...+ .
T Consensus 163 ~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~----~~~~~~i~~--~~~~~p~~~s------~ 230 (337)
T d1o6la_ 163 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH----ERLFELILM--EEIRFPRTLS------P 230 (337)
T ss_dssp CCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHH--CCCCCCTTSC------H
T ss_pred ccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCH----HHHHHHHhc--CCCCCCccCC------H
Confidence 6789999999999 78899999999999999999999864321 111111111 1222332222 2
Q ss_pred HHHHHHHhccccCCCCCCC-----HHHHHHHHHHhhhhh
Q 042735 629 SIMEVAFSCLDVSPESRPT-----MQTITQQLLFSLVYF 662 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt-----~~ev~~~l~~~~~~~ 662 (667)
++.+++.+||+.||++||+ ++|+++|.||..+.|
T Consensus 231 ~~~dli~~~L~~dP~~R~~~~~~~~~eil~Hp~f~~i~~ 269 (337)
T d1o6la_ 231 EAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 269 (337)
T ss_dssp HHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCCH
T ss_pred HHHHHHHhhccCCchhhcccccccHHHHHcCcccccCCH
Confidence 4567888999999999994 999999999976544
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-41 Score=342.63 Aligned_cols=232 Identities=18% Similarity=0.250 Sum_probs=175.3
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCC--chHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPS--DQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSI 497 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~--~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~ 497 (667)
+.|+..+.||+|+||+||+|+. .+|+.||||++...... ......+.|.+|+++|++++|||||++++++.+.+..|
T Consensus 10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ 89 (293)
T d1jksa_ 10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI 89 (293)
T ss_dssp GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence 4689999999999999999987 56889999988643221 11123567999999999999999999999999999999
Q ss_pred EEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCC----ceEEecccccccccC
Q 042735 498 LIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEH----KAHVSDFGIAKFLKP 549 (667)
Q Consensus 498 lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~----~~kl~DFGla~~~~~ 549 (667)
+|||||++|+|.+.+..... ..|.||||+|||++.++ .+|++|||+|+....
T Consensus 90 iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~ 169 (293)
T d1jksa_ 90 LILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF 169 (293)
T ss_dssp EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTT
T ss_pred EEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhcCC
Confidence 99999999999988754321 12449999999998776 499999999987654
Q ss_pred CCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 550 DSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
.. ......||+.||||| |+.++|||||||++|||+||+.||..... .... ..+.......+....
T Consensus 170 ~~-~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~----~~~~----~~i~~~~~~~~~~~~ 240 (293)
T d1jksa_ 170 GN-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK----QETL----ANVSAVNYEFEDEYF 240 (293)
T ss_dssp SC-BCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHH----HHHHTTCCCCCHHHH
T ss_pred Cc-cccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCH----HHHH----HHHHhcCCCCCchhc
Confidence 33 234568999999999 67899999999999999999999863221 0111 111111111111111
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
......+.+++.+||+.||++|||++|++++.|+....
T Consensus 241 ~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~~ 278 (293)
T d1jksa_ 241 SNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKD 278 (293)
T ss_dssp TTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTCC--
T ss_pred CCCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCCC
Confidence 11123466888999999999999999999999886433
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Probab=100.00 E-value=4.4e-41 Score=347.73 Aligned_cols=228 Identities=19% Similarity=0.327 Sum_probs=176.4
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
+++|+..+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|++++++++|||||++++++.+.+..|+
T Consensus 25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~----~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~i 100 (350)
T d1koaa2 25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH----ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVM 100 (350)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCS----HHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEE
T ss_pred ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccc----hhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 46899999999999999999986 568899999986532 2345679999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc--C-----------------------CcccccccCCeeec--CCCceEEecccccccccCCC
Q 042735 499 IYEYLKRGSLATNLSNDA--A-----------------------AEELDISSKNVLLD--LEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~--~-----------------------~~~~dlk~~NiLld--~~~~~kl~DFGla~~~~~~~ 551 (667)
|||||++|+|.+.+.... . ..|.||||+|||++ .++.+||+|||+|+......
T Consensus 101 vmE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~ 180 (350)
T d1koaa2 101 IYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ 180 (350)
T ss_dssp EECCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTS
T ss_pred EEEcCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheeccccc
Confidence 999999999999885332 1 11449999999996 46889999999999765433
Q ss_pred CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
...+.+||+.||||| |+.++||||+||++|||+||+.||..... .... ..+.......+......
T Consensus 181 -~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~----~~~~----~~i~~~~~~~~~~~~~~ 251 (350)
T d1koaa2 181 -SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND----DETL----RNVKSCDWNMDDSAFSG 251 (350)
T ss_dssp -CEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHH----HHHHHTCCCSCCGGGGG
T ss_pred -ccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCH----HHHH----HHHHhCCCCCCcccccC
Confidence 345578999999999 67899999999999999999999853221 1111 11111111111111111
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
....+.+++.+||+.||++|||++|+++|.|+...
T Consensus 252 ~s~~~~~li~~~L~~dP~~R~t~~eil~hp~~~~~ 286 (350)
T d1koaa2 252 ISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPG 286 (350)
T ss_dssp CCHHHHHHHHHHCCSSGGGSCCHHHHHHSTTTSCT
T ss_pred CCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCC
Confidence 22356788889999999999999999999988654
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-40 Score=334.83 Aligned_cols=221 Identities=22% Similarity=0.391 Sum_probs=162.0
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|+..+.||+|+||+||+|+.+++..||||++..... ..+.|.+|+.++++++|||||+++|+|. .+..++||
T Consensus 17 ~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~-----~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv~ 90 (285)
T d1fmka3 17 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-----SPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVT 90 (285)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-----CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred HHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccC-----CHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEEE
Confidence 57889999999999999999998888899999864322 2357999999999999999999999985 45689999
Q ss_pred EecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCC-C
Q 042735 501 EYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS-N 553 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~-~ 553 (667)
||+++|+|...+.... ...|.||||+|||+|.++++||+|||+|+....... .
T Consensus 91 Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~ 170 (285)
T d1fmka3 91 EYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA 170 (285)
T ss_dssp CCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC---------
T ss_pred EecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhhccCCCcee
Confidence 9999999987664321 122459999999999999999999999987654332 2
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKL 627 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (667)
.+...||+.|+||| |+.++|||||||++|||+||+.|+..... ....... +.....+..+...+
T Consensus 171 ~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~---~~~~~~~-i~~~~~~~~~~~~~------ 240 (285)
T d1fmka3 171 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV---NREVLDQ-VERGYRMPCPPECP------ 240 (285)
T ss_dssp -----CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC---HHHHHHH-HHTTCCCCCCTTSC------
T ss_pred eccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCC---HHHHHHH-HHhcCCCCCCcccC------
Confidence 33467999999999 67899999999999999997766432111 1111111 11111222222222
Q ss_pred HHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 628 ISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 628 ~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
.++.+++.+||+.||++||||++|++.|..
T Consensus 241 ~~l~~li~~cl~~dP~~Rps~~~i~~~L~~ 270 (285)
T d1fmka3 241 ESLHDLMCQCWRKEPEERPTFEYLQAFLED 270 (285)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred HHHHHHHHHHcccCHhHCcCHHHHHHHHhh
Confidence 246788899999999999999999886643
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.6e-40 Score=337.99 Aligned_cols=226 Identities=22% Similarity=0.358 Sum_probs=172.0
Q ss_pred HcCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA 493 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~ 493 (667)
.++|+..+.||+|+||+||+|+++ ++..||||++..... ....++|.+|++++++++|||||+++|+|.+.
T Consensus 12 ~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~---~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~ 88 (301)
T d1lufa_ 12 RNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEAS---ADMQADFQREAALMAEFDNPNIVKLLGVCAVG 88 (301)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCC---HHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred HHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcC---hHHHHHHHHHHHHHHhcCCCCcccceeeeccC
Confidence 468999999999999999999864 346799999865332 23456799999999999999999999999999
Q ss_pred CceEEEEEecCCCChHHHhcccc------------------------------------------------CCccccccc
Q 042735 494 RHSILIYEYLKRGSLATNLSNDA------------------------------------------------AAEELDISS 525 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~------------------------------------------------~~~~~dlk~ 525 (667)
...++||||+++|+|.+.+.... ...|.||||
T Consensus 89 ~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDlKp 168 (301)
T d1lufa_ 89 KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLAT 168 (301)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSG
T ss_pred CceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEEcc
Confidence 99999999999999998874311 011349999
Q ss_pred CCeeecCCCceEEecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCC-CCCCCCcc
Q 042735 526 KNVLLDLEHKAHVSDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGK-HPRGFVSS 596 (667)
Q Consensus 526 ~NiLld~~~~~kl~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~-~p~~~~~~ 596 (667)
+|||+|.++.+||+|||+|+....... ..++..||+.||||| |+.|+|||||||++|||+||. +|+.....
T Consensus 169 ~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~ 248 (301)
T d1lufa_ 169 RNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAH 248 (301)
T ss_dssp GGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH
T ss_pred cceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCCH
Confidence 999999999999999999987644322 234567999999999 788999999999999999996 46543221
Q ss_pred CCCChhhhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 597 ILPSPSVINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..... .+.+...++..... ..++.+++.+||+.+|++||||.||++.|..+.
T Consensus 249 ----~e~~~----~v~~~~~~~~p~~~---~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~ 300 (301)
T d1lufa_ 249 ----EEVIY----YVRDGNILACPENC---PLELYNLMRLCWSKLPADRPSFCSIHRILQRMC 300 (301)
T ss_dssp ----HHHHH----HHHTTCCCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred ----HHHHH----HHHcCCCCCCCccc---hHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence 11111 11122221111111 225678899999999999999999999988654
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.4e-41 Score=344.07 Aligned_cols=228 Identities=22% Similarity=0.365 Sum_probs=177.8
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
+++|+..+.||+|+||+||+|+. .+|+.||||++..... ......+.+.+|+.++++++|||||++++++.+.+..|+
T Consensus 3 l~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~-~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~i 81 (316)
T d1fota_ 3 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIV-VRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFM 81 (316)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-HHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEE
T ss_pred hhHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHc-cCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeee
Confidence 46899999999999999999986 5688999999853211 111234678999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||||++|++...+.... ...|.||||+|||++.++.+||+|||+|+..... .
T Consensus 82 vmE~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~---~ 158 (316)
T d1fota_ 82 IMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV---T 158 (316)
T ss_dssp EECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC---B
T ss_pred EeeecCCccccccccccccccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCccceEeccc---c
Confidence 999999999987664332 1235599999999999999999999999976532 3
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
++.+||+.||||| |+.++||||+||++|||+||+.||..... .......... ....++..+ .
T Consensus 159 ~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~----~~~~~~i~~~--~~~~p~~~s------~ 226 (316)
T d1fota_ 159 YTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT----MKTYEKILNA--ELRFPPFFN------E 226 (316)
T ss_dssp CCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH----HHHHHHHHHC--CCCCCTTSC------H
T ss_pred ccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCH----HHHHHHHHcC--CCCCCCCCC------H
Confidence 4578999999999 78899999999999999999999863221 1111111111 122222222 2
Q ss_pred HHHHHHHhccccCCCCCC-----CHHHHHHHHHHhhhhhc
Q 042735 629 SIMEVAFSCLDVSPESRP-----TMQTITQQLLFSLVYFS 663 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~~ 663 (667)
++.+++.+||+.||.+|| |++|+++|.||..+.|+
T Consensus 227 ~~~~li~~~L~~dp~~R~~~~r~t~~~il~Hp~f~~i~~~ 266 (316)
T d1fota_ 227 DVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWE 266 (316)
T ss_dssp HHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSCCHH
T ss_pred HHHHHHHHHhhhCHHhccccchhhHHHHHcCcccccCCHH
Confidence 456788899999999995 99999999999876554
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=100.00 E-value=1.3e-40 Score=333.15 Aligned_cols=230 Identities=22% Similarity=0.359 Sum_probs=177.0
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCch-----HHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQ-----IADQKEFFAEIEALTKIR-HRNIVKFYGFCSHA 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~-----~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~ 493 (667)
++|+..+.||+|+||+||+|+. .+++.+|||++........ ....+.+.+|+.++++++ |||||++++++.++
T Consensus 3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 82 (277)
T d1phka_ 3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN 82 (277)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence 5789999999999999999986 5688999999865432211 122346889999999998 99999999999999
Q ss_pred CceEEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccC
Q 042735 494 RHSILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~ 549 (667)
+..|+|||||++|+|.+.+..... ..|.||||+|||++.++.+||+|||+++....
T Consensus 83 ~~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~ 162 (277)
T d1phka_ 83 TFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDP 162 (277)
T ss_dssp SEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCT
T ss_pred cceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccchheeEccC
Confidence 999999999999999988854321 12349999999999999999999999998765
Q ss_pred CCCCcccccccccccCCC------------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCC
Q 042735 550 DSSNWSALVGTYRYVAPD------------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE------------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (667)
... .+..+||+.|+||| |+.++||||+||++|||+||+.||..... .......... ....+
T Consensus 163 ~~~-~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~----~~~~~~i~~~--~~~~~ 235 (277)
T d1phka_ 163 GEK-LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ----MLMLRMIMSG--NYQFG 235 (277)
T ss_dssp TCC-BCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHHT--CCCCC
T ss_pred CCc-eeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCH----HHHHHHHHhC--CCCCC
Confidence 432 34578999999998 36689999999999999999999864321 1111111111 11111
Q ss_pred CCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
. +.......++.+++.+||+.||++|||++||++|.|+..
T Consensus 236 ~--~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~h~~~~~ 275 (277)
T d1phka_ 236 S--PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQ 275 (277)
T ss_dssp T--TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCT
T ss_pred C--cccccCCHHHHHHHHHHccCChhHCcCHHHHHcCHHHHH
Confidence 1 111122235778889999999999999999999998854
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Probab=100.00 E-value=1e-40 Score=345.14 Aligned_cols=226 Identities=19% Similarity=0.285 Sum_probs=175.1
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++|||||++++++.+++..|+|
T Consensus 29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~----~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv 104 (352)
T d1koba_ 29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY----PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI 104 (352)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS----HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEE
T ss_pred cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcc----hhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 5789999999999999999986 568899999986532 23456788999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccccC-------------------------CcccccccCCeeec--CCCceEEecccccccccCCCC
Q 042735 500 YEYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLD--LEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld--~~~~~kl~DFGla~~~~~~~~ 552 (667)
||||++|+|.+.+..... ..|.||||+|||++ .++.+||+|||+|+......
T Consensus 105 mE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~- 183 (352)
T d1koba_ 105 LEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE- 183 (352)
T ss_dssp EECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS-
T ss_pred EEcCCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCCCC-
Confidence 999999999887654321 12459999999998 67899999999999876543
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
...+..||+.||||| |+.++||||+||++|||+||+.||...... ........ .+...+... ....
T Consensus 184 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~----~~~~~i~~--~~~~~~~~~--~~~~ 255 (352)
T d1koba_ 184 IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDL----ETLQNVKR--CDWEFDEDA--FSSV 255 (352)
T ss_dssp CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH----HHHHHHHH--CCCCCCSST--TTTS
T ss_pred ceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHH----HHHHHHHh--CCCCCCccc--ccCC
Confidence 345578999999999 678999999999999999999998633211 11111111 111111111 0111
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
..++.+++.+||+.||++|||++|+++|.|+..
T Consensus 256 s~~~~~li~~~L~~dp~~R~s~~eil~Hp~~~~ 288 (352)
T d1koba_ 256 SPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKG 288 (352)
T ss_dssp CHHHHHHHHTTSCSSGGGSCCHHHHHTSTTTSS
T ss_pred CHHHHHHHHHHccCChhHCcCHHHHhcCHhhCC
Confidence 224668888999999999999999999988864
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-40 Score=328.16 Aligned_cols=217 Identities=26% Similarity=0.436 Sum_probs=160.5
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe-CCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH-ARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~-~~~~~lv 499 (667)
++|+..+.||+|+||.||+|++. +..||||+++... ..++|.+|++++++++|||||+++|+|.+ .+..++|
T Consensus 7 ~~~~~~~~lG~G~fg~Vy~~~~~-~~~vAvK~i~~~~------~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv 79 (262)
T d1byga_ 7 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA------TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV 79 (262)
T ss_dssp GGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC--------HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEE
T ss_pred HHeEEeEEEecCCCeEEEEEEEC-CeEEEEEEECcHH------HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEE
Confidence 57788899999999999999985 6789999986532 23579999999999999999999999965 4568999
Q ss_pred EEecCCCChHHHhcccc--------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 500 YEYLKRGSLATNLSNDA--------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~--------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
|||+++|+|.+++.... ...|.||||+|||++.++.+|++|||+++.....
T Consensus 80 ~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~--- 156 (262)
T d1byga_ 80 TEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST--- 156 (262)
T ss_dssp ECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC----------
T ss_pred EeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeecccccceecCCC---
Confidence 99999999998875421 1123499999999999999999999999875432
Q ss_pred cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHH
Q 042735 554 WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGK 626 (667)
Q Consensus 554 ~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (667)
.....||+.|+||| |+.++|||||||++|||+| |+.|+..... ..... .+.....+..+...+
T Consensus 157 ~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~----~~~~~-~i~~~~~~~~~~~~~----- 226 (262)
T d1byga_ 157 QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL----KDVVP-RVEKGYKMDAPDGCP----- 226 (262)
T ss_dssp -----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCG----GGHHH-HHTTTCCCCCCTTCC-----
T ss_pred CccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCH----HHHHH-HHHcCCCCCCCccCC-----
Confidence 23457899999999 6789999999999999999 6777653221 11111 111222233333222
Q ss_pred HHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 627 LISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 627 ~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.++.+++.+||+.||++||||.||+++|...
T Consensus 227 -~~~~~li~~cl~~dP~~Rps~~~l~~~L~~i 257 (262)
T d1byga_ 227 -PAVYEVMKNCWHLDAAMRPSFLQLREQLEHI 257 (262)
T ss_dssp -HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcccCHhHCcCHHHHHHHHHHH
Confidence 2466888899999999999999999998754
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-40 Score=336.12 Aligned_cols=229 Identities=26% Similarity=0.375 Sum_probs=164.0
Q ss_pred CCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHH--HHHHHHhcCCCCeeEEEEEEEeCC----c
Q 042735 422 DFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFA--EIEALTKIRHRNIVKFYGFCSHAR----H 495 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~--E~~~l~~l~H~niv~~~g~~~~~~----~ 495 (667)
+|...+.||+|+||+||+|++ +|..||||++... ..+.+.+ |+..+.+++|||||+++|+|.+.+ .
T Consensus 4 ~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~-------~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~ 75 (303)
T d1vjya_ 4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR-------EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ 75 (303)
T ss_dssp GEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGG-------GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEE
T ss_pred EEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECcc-------chhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceE
Confidence 456678899999999999997 5778999998531 1233444 555556889999999999998754 5
Q ss_pred eEEEEEecCCCChHHHhcccc-------------------------------CCcccccccCCeeecCCCceEEeccccc
Q 042735 496 SILIYEYLKRGSLATNLSNDA-------------------------------AAEELDISSKNVLLDLEHKAHVSDFGIA 544 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~-------------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla 544 (667)
.++|||||++|+|.+.+.... ...|.||||+|||+|.++.+||+|||++
T Consensus 76 ~~lv~Ey~~~g~L~~~l~~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~ 155 (303)
T d1vjya_ 76 LWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp EEEEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred EEEEEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCcc
Confidence 789999999999998875421 1125599999999999999999999999
Q ss_pred ccccCCCC----CcccccccccccCCCC------------CCCchHHHHHHHHHHHHhCCCCCCCCccCC-C--------
Q 042735 545 KFLKPDSS----NWSALVGTYRYVAPDY------------RKKCDVYSFRVLALEVIKGKHPRGFVSSIL-P-------- 599 (667)
Q Consensus 545 ~~~~~~~~----~~~~~~Gt~~y~aPE~------------~~~~DV~sfGvvl~ElltG~~p~~~~~~~~-~-------- 599 (667)
+....... .....+||+.|||||+ +.|+|||||||++|||+||..|+....... +
T Consensus 156 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~ 235 (303)
T d1vjya_ 156 VRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSD 235 (303)
T ss_dssp EEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSS
T ss_pred ccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhccccc
Confidence 97654332 2234679999999993 337899999999999999998865321110 0
Q ss_pred -Chh-hhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 600 -SPS-VINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 600 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
... ..........+|.++... ........+.+++.+||+.||++||||.||+++|....
T Consensus 236 ~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~ 296 (303)
T d1vjya_ 236 PSVEEMRKVVCEQKLRPNIPNRW-QSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLS 296 (303)
T ss_dssp CCHHHHHHHHTTSCCCCCCCGGG-GGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHhccccCCCCCccc-CChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHH
Confidence 000 111111122223222211 12234456888999999999999999999999987654
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.1e-40 Score=328.88 Aligned_cols=224 Identities=24% Similarity=0.390 Sum_probs=158.6
Q ss_pred cCCcCcceeecccCeEEEEEEeCC----CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS----KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~----~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
++|+..+.||+|+||+||+|.+.. +..||||++.... .....+.|.+|++++++++|||||+++|++. .+..
T Consensus 7 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~---~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~ 82 (273)
T d1mp8a_ 7 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT---SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV 82 (273)
T ss_dssp GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT---SHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSC
T ss_pred HHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEecccc---CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeE
Confidence 578888999999999999998743 2458888875432 2334567999999999999999999999995 4678
Q ss_pred EEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
++||||+++|++.+.+.... ...|.||||+||+++.++.+||+|||+|+......
T Consensus 83 ~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~ 162 (273)
T d1mp8a_ 83 WIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 162 (273)
T ss_dssp EEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC-----------
T ss_pred EEEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhheeccCCc
Confidence 99999999999987654321 11245999999999999999999999998765432
Q ss_pred C-CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCch
Q 042735 552 S-NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDV 623 (667)
Q Consensus 552 ~-~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (667)
. ..+...||+.||||| |+.++|||||||++|||+| |++||...... .... .+.....+..++..+
T Consensus 163 ~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~----~~~~-~i~~~~~~~~~~~~~-- 235 (273)
T d1mp8a_ 163 YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN----DVIG-RIENGERLPMPPNCP-- 235 (273)
T ss_dssp --------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG----GHHH-HHHTTCCCCCCTTCC--
T ss_pred ceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHH----HHHH-HHHcCCCCCCCCCCC--
Confidence 2 234467899999999 6889999999999999998 88887643321 1111 111111122222222
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 624 QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 624 ~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.++.+++.+||+.||++||||+||+++|..+.
T Consensus 236 ----~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~ 267 (273)
T d1mp8a_ 236 ----PTLYSLMTKCWAYDPSRRPRFTELKAQLSTIL 267 (273)
T ss_dssp ----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence 24667888999999999999999999987654
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-39 Score=331.24 Aligned_cols=225 Identities=24% Similarity=0.391 Sum_probs=166.6
Q ss_pred cceeecccCeEEEEEEeCCC----ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC-CceEEEE
Q 042735 426 KYCIGSGRHGSVYRAELPSK----EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA-RHSILIY 500 (667)
Q Consensus 426 ~~~lg~g~~g~vy~~~~~~~----~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~-~~~~lv~ 500 (667)
.++||+|+||+||+|.+..+ ..||||++.... .....++|.+|++++++++|||||+++|++.+. ...++||
T Consensus 32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~---~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ 108 (311)
T d1r0pa_ 32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT---DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVL 108 (311)
T ss_dssp EEEEEEETTEEEEEEEECC----CEEEEEEEECCCC---CHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEE
T ss_pred ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECccc---CHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEE
Confidence 45799999999999987542 258999986432 234457899999999999999999999998764 5789999
Q ss_pred EecCCCChHHHhccccC-------------------------CcccccccCCeeecCCCceEEecccccccccCCCC---
Q 042735 501 EYLKRGSLATNLSNDAA-------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS--- 552 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~~-------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~--- 552 (667)
|||++|+|.+++..... ..|.||||+|||+|+++.+||+|||+++.......
T Consensus 109 E~~~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~ 188 (311)
T d1r0pa_ 109 PYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV 188 (311)
T ss_dssp ECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCT
T ss_pred EEeecCchhhhhccccccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhccccccccc
Confidence 99999999987764321 12449999999999999999999999997654322
Q ss_pred -CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 553 -NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 553 -~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
......||+.|+||| |+.++|||||||++|||+||+.|+....... ..... +.....+..|...+
T Consensus 189 ~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~---~~~~~-i~~g~~~~~p~~~~---- 260 (311)
T d1r0pa_ 189 HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF---DITVY-LLQGRRLLQPEYCP---- 260 (311)
T ss_dssp TCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC---------CHHH-HHTTCCCCCCTTCC----
T ss_pred eecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHH---HHHHH-HHcCCCCCCcccCc----
Confidence 123357899999999 6789999999999999999888764322111 11111 11111111222111
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhhc
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~~ 663 (667)
..+.+++.+||+.||++||||.||+++|......|.
T Consensus 261 --~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~~~ 296 (311)
T d1r0pa_ 261 --DPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFI 296 (311)
T ss_dssp --HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCC
T ss_pred --HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHhhh
Confidence 246788899999999999999999999887755443
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.9e-40 Score=343.76 Aligned_cols=229 Identities=20% Similarity=0.259 Sum_probs=172.6
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHH---HHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFA---EIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~---E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
+++|+..++||+|+||.||+|+.. +|+.||||++...... .......+.+ |+++++.++|||||++++++.+.+.
T Consensus 3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~-~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~ 81 (364)
T d1omwa3 3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIK-MKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDK 81 (364)
T ss_dssp STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHH-HHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSE
T ss_pred HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcc-hhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCE
Confidence 478999999999999999999864 6889999987532110 0111223444 4677778889999999999999999
Q ss_pred eEEEEEecCCCChHHHhccccC------------------------CcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 496 SILIYEYLKRGSLATNLSNDAA------------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~~------------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
.|+|||||++|+|.+++..... ..|.||||+|||++.++.+||+|||+|+......
T Consensus 82 ~~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~ 161 (364)
T d1omwa3 82 LSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK 161 (364)
T ss_dssp EEEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSSC
T ss_pred EEEEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeeceeeecCCCc
Confidence 9999999999999988754321 1245999999999999999999999999765432
Q ss_pred CCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccC--CCCCCCCCc
Q 042735 552 SNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLD--PRLPPPSPD 622 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 622 (667)
....+||+.||||| |+.++|||||||++|||+||+.||...... .... ....... +..+...+
T Consensus 162 --~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~--~~~~---~~~~~~~~~~~~~~~~s- 233 (364)
T d1omwa3 162 --PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK--DKHE---IDRMTLTMAVELPDSFS- 233 (364)
T ss_dssp --CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSS--CHHH---HHHHSSSCCCCCCSSSC-
T ss_pred --ccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHH--HHHH---HHHhcccCCCCCCCCCC-
Confidence 34568999999999 678899999999999999999998643211 0000 1111111 11222111
Q ss_pred hHHHHHHHHHHHHhccccCCCCCCC-----HHHHHHHHHHhhhhh
Q 042735 623 VQGKLISIMEVAFSCLDVSPESRPT-----MQTITQQLLFSLVYF 662 (667)
Q Consensus 623 ~~~~~~~~~~~~~~Cl~~~p~~RPt-----~~ev~~~l~~~~~~~ 662 (667)
.++.+++.+||+.||++||| ++|+++|.||..+.|
T Consensus 234 -----~~~~~li~~~L~~dP~~R~t~~~~~a~eil~Hp~f~~i~~ 273 (364)
T d1omwa3 234 -----PELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDW 273 (364)
T ss_dssp -----HHHHHHHHHHTCSSTTTSTTTSSSTHHHHHTSGGGTTCCH
T ss_pred -----HHHHHHHHHHcccCHHHhCCCcccCHHHHHcCccccCCCH
Confidence 24667888999999999999 799999999987654
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-39 Score=333.98 Aligned_cols=224 Identities=21% Similarity=0.391 Sum_probs=164.9
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-Cc----eEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCc
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-KE----FLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARH 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-~~----~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~ 495 (667)
++|+..+.||+|+||+||+|.+.. ++ .||||++..... ....++|.+|++++++++|||||+++|+|.++ .
T Consensus 9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~ 84 (317)
T d1xkka_ 9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS---PKANKEILDEAYVMASVDNPHVCRLLGICLTS-T 84 (317)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC-------CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-S
T ss_pred HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-C
Confidence 478999999999999999998643 43 488888764322 22356799999999999999999999999865 5
Q ss_pred eEEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
.++++||+.+|+|.+.+.... ...|.||||+|||+|.++.+||+|||+|+.....
T Consensus 85 ~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~ 164 (317)
T d1xkka_ 85 VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAE 164 (317)
T ss_dssp EEEEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTT
T ss_pred eeEEEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeeccccceecccc
Confidence 678899999999987664321 1224599999999999999999999999976544
Q ss_pred CCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 551 SSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 551 ~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
... .....||+.||||| |+.++|||||||++|||+| |++||..... ..... .+.....+..+...
T Consensus 165 ~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~----~~~~~-~i~~~~~~~~p~~~- 238 (317)
T d1xkka_ 165 EKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA----SEISS-ILEKGERLPQPPIC- 238 (317)
T ss_dssp CC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCG----GGHHH-HHHHTCCCCCCTTB-
T ss_pred cccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCH----HHHHH-HHHcCCCCCCCccc-
Confidence 332 23456899999999 7889999999999999999 7888764321 11111 11111112222211
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
...+.+++.+||+.||++||||+||++++....
T Consensus 239 -----~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~ 271 (317)
T d1xkka_ 239 -----TIDVYMIMVKCWMIDADSRPKFRELIIEFSKMA 271 (317)
T ss_dssp -----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHhCCCChhhCcCHHHHHHHHHHHH
Confidence 224678888999999999999999999987653
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.9e-40 Score=327.60 Aligned_cols=225 Identities=24% Similarity=0.382 Sum_probs=157.7
Q ss_pred cCCcCcceeecccCeEEEEEEeCC--C--ceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS--K--EFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~--~--~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~ 496 (667)
.+|+..+.||+|+||+||+|++.. + ..||||++....... ....++|.+|++++++++|||||+++|+|.+ +..
T Consensus 8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~-~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~ 85 (273)
T d1u46a_ 8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQ-PEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPM 85 (273)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC---------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSC
T ss_pred HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCC-HHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cch
Confidence 578889999999999999997632 2 368999886543322 2345679999999999999999999999976 467
Q ss_pred EEEEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 497 ILIYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
++||||+++|++.+.+.... ...|.||||+||+++.++.+||+|||+++......
T Consensus 86 ~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~ 165 (273)
T d1u46a_ 86 KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQND 165 (273)
T ss_dssp EEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-C
T ss_pred heeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhhhhcccCC
Confidence 89999999999987654321 12245999999999999999999999999865443
Q ss_pred CC---cccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 552 SN---WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 552 ~~---~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
.. .+...||+.|+||| |+.++|||||||++|||+| |+.||..... .............+..+...+
T Consensus 166 ~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~----~~~~~~i~~~~~~~~~~~~~~ 241 (273)
T d1u46a_ 166 DHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG----SQILHKIDKEGERLPRPEDCP 241 (273)
T ss_dssp CEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH----HHHHHHHHTSCCCCCCCTTCC
T ss_pred CcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCH----HHHHHHHHhCCCCCCCccccc
Confidence 21 23356888999999 6778999999999999998 8999853321 111111111111111121111
Q ss_pred chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
..+.+++.+||+.||++||||+||.+.|..
T Consensus 242 ------~~l~~li~~cl~~dp~~RPt~~ei~~~L~~ 271 (273)
T d1u46a_ 242 ------QDIYNVMVQCWAHKPEDRPTFVALRDFLLE 271 (273)
T ss_dssp ------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence 246788899999999999999999987765
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-39 Score=333.65 Aligned_cols=226 Identities=20% Similarity=0.296 Sum_probs=168.4
Q ss_pred HcCCcCc-ceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEe----
Q 042735 420 INDFDAK-YCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSH---- 492 (667)
Q Consensus 420 ~~~f~~~-~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~---- 492 (667)
+++|... ++||+|+||+||+|+. .+++.||||++... ..+.+|++++.++ +|||||++++++.+
T Consensus 10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~---------~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~ 80 (335)
T d2ozaa1 10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC---------PKARREVELHWRASQCPHIVRIVDVYENLYAG 80 (335)
T ss_dssp GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS---------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETT
T ss_pred ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc---------HHHHHHHHHHHHhcCCCCCCeEEEEEeecccC
Confidence 4678776 4699999999999986 56889999998531 3467899987665 79999999999875
Q ss_pred CCceEEEEEecCCCChHHHhcccc---C-----------------------CcccccccCCeeecC---CCceEEecccc
Q 042735 493 ARHSILIYEYLKRGSLATNLSNDA---A-----------------------AEELDISSKNVLLDL---EHKAHVSDFGI 543 (667)
Q Consensus 493 ~~~~~lv~ey~~~g~L~~~l~~~~---~-----------------------~~~~dlk~~NiLld~---~~~~kl~DFGl 543 (667)
....|+|||||+||+|.+++.... . ..|.||||+|||++. ++.+||+|||+
T Consensus 81 ~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~ 160 (335)
T d2ozaa1 81 RKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGF 160 (335)
T ss_dssp EEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTT
T ss_pred CCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCccccccccccccccccccccccccccce
Confidence 356899999999999999886531 1 114499999999985 56799999999
Q ss_pred cccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCC
Q 042735 544 AKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617 (667)
Q Consensus 544 a~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (667)
|+...... .....+||+.||||| |+.++|||||||++|||+||+.||............. ..+......
T Consensus 161 a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~----~~i~~~~~~ 235 (335)
T d2ozaa1 161 AKETTSHN-SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMK----TRIRMGQYE 235 (335)
T ss_dssp CEECCCCC-CCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC------------CCCSCSSS
T ss_pred eeeccCCC-ccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHH----HHHhcCCCC
Confidence 99765443 335578999999999 5779999999999999999999985332211111110 111111222
Q ss_pred CCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.+.+.......++.+++.+||+.||++|||++|+++|.|+..
T Consensus 236 ~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~ 277 (335)
T d2ozaa1 236 FPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQ 277 (335)
T ss_dssp CCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHHSHHHHT
T ss_pred CCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcCHHhhC
Confidence 222222233346778899999999999999999999998853
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-40 Score=338.30 Aligned_cols=229 Identities=23% Similarity=0.352 Sum_probs=176.4
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHH-hcCCCCeeEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALT-KIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~-~l~H~niv~~~g~~~~~~~~~l 498 (667)
++|+..+.||+|+||+||+|+. .+++.||||++..... ......+.+.+|+.++. .++|||||++++++.+++..|+
T Consensus 2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~-~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yi 80 (320)
T d1xjda_ 2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVV-LMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFF 80 (320)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHH-HHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhc-cChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeE
Confidence 6899999999999999999986 4688999999853211 01122346778888765 6899999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||||++|+|.+++.... ...|.||||+|||++.++.+||+|||+|+.........
T Consensus 81 vmEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~~~ 160 (320)
T d1xjda_ 81 VMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKT 160 (320)
T ss_dssp EEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCB
T ss_pred EEeecCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchhhhcccccccc
Confidence 999999999998875432 12245999999999999999999999999766555555
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
+..+||+.||||| |+.++||||+||++|||+||+.||..... ........ .-.+..|...+ .
T Consensus 161 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~----~~~~~~i~--~~~~~~p~~~s------~ 228 (320)
T d1xjda_ 161 NTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE----EELFHSIR--MDNPFYPRWLE------K 228 (320)
T ss_dssp CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHH--HCCCCCCTTSC------H
T ss_pred cccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCH----HHHHHHHH--cCCCCCCccCC------H
Confidence 6678999999999 68899999999999999999999864321 11111111 11223332222 2
Q ss_pred HHHHHHHhccccCCCCCCCHH-HHHHHHHHhhhhh
Q 042735 629 SIMEVAFSCLDVSPESRPTMQ-TITQQLLFSLVYF 662 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~RPt~~-ev~~~l~~~~~~~ 662 (667)
++.+++.+||+.||++|||++ |+++|.||....|
T Consensus 229 ~~~dli~~~L~~dP~~R~s~~~~l~~hpff~~~~~ 263 (320)
T d1xjda_ 229 EAKDLLVKLFVREPEKRLGVRGDIRQHPLFREINW 263 (320)
T ss_dssp HHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTTCCH
T ss_pred HHHHHHHHhcccCCCCCcCHHHHHHhCchhccCCH
Confidence 456788899999999999995 8999998876543
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-39 Score=332.67 Aligned_cols=224 Identities=24% Similarity=0.361 Sum_probs=165.6
Q ss_pred cCCcCcceeecccCeEEEEEEeCC-Cc--eEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeCCce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS-KE--FLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHARHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~-~~--~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~~~~ 496 (667)
++|+..++||+|+||+||+|.+++ +. .||||++..... ....+.|.+|+++++++ +|||||+++|+|.+.+..
T Consensus 10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~ 86 (309)
T d1fvra_ 10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYAS---KDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL 86 (309)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC---------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEE
T ss_pred HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccC---hHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCee
Confidence 688889999999999999998754 33 477887754322 12345799999999999 799999999999999999
Q ss_pred EEEEEecCCCChHHHhcccc----------------------------------------CCcccccccCCeeecCCCce
Q 042735 497 ILIYEYLKRGSLATNLSNDA----------------------------------------AAEELDISSKNVLLDLEHKA 536 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~~~----------------------------------------~~~~~dlk~~NiLld~~~~~ 536 (667)
++||||+++|+|.++++... ...|.||||+|||++.++.+
T Consensus 87 ~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~~~~ 166 (309)
T d1fvra_ 87 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVA 166 (309)
T ss_dssp EEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCE
T ss_pred EEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEEcCCCce
Confidence 99999999999999886431 01134999999999999999
Q ss_pred EEecccccccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCC-CCCCCccCCCChhhhhhhhc
Q 042735 537 HVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKH-PRGFVSSILPSPSVINMRLD 609 (667)
Q Consensus 537 kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~-p~~~~~~~~~~~~~~~~~~~ 609 (667)
||+|||+|+....... .....||+.|+||| |+.++|||||||++|||+||.. ||.... ...... .+.
T Consensus 167 kl~DfG~a~~~~~~~~-~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~----~~~~~~-~i~ 240 (309)
T d1fvra_ 167 KIADFGLSRGQEVYVK-KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT----CAELYE-KLP 240 (309)
T ss_dssp EECCTTCEESSCEECC-C----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC----HHHHHH-HGG
T ss_pred EEcccccccccccccc-ccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCC----HHHHHH-HHH
Confidence 9999999986543322 23457999999999 7889999999999999999765 553221 111111 111
Q ss_pred cccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 610 EMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
....+..+...+ .++.+++.+||+.||++||||+||+++|....
T Consensus 241 ~~~~~~~~~~~~------~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~ 284 (309)
T d1fvra_ 241 QGYRLEKPLNCD------DEVYDLMRQCWREKPYERPSFAQILVSLNRML 284 (309)
T ss_dssp GTCCCCCCTTBC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred hcCCCCCCccCC------HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 212222222222 24667888999999999999999999887653
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-39 Score=329.21 Aligned_cols=235 Identities=19% Similarity=0.253 Sum_probs=167.3
Q ss_pred CcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCch-HHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEEEe
Q 042735 425 AKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQ-IADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIYEY 502 (667)
Q Consensus 425 ~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ey 502 (667)
..+.||+|+||+||+|+. .+++.||||++........ ....+.+.+|+.++++++|||||++++++.+++..++||||
T Consensus 2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~ 81 (299)
T d1ua2a_ 2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF 81 (299)
T ss_dssp EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEEC
T ss_pred cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhh
Confidence 346899999999999986 4688999999865332111 11134688999999999999999999999999999999999
Q ss_pred cCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccccc
Q 042735 503 LKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSALV 558 (667)
Q Consensus 503 ~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~~~ 558 (667)
+.+|++........ ...|.||||+|||++.++.+||+|||+|+............+
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~~~~~~ 161 (299)
T d1ua2a_ 82 METDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQV 161 (299)
T ss_dssp CSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSC
T ss_pred hcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCccccccCCCccccccee
Confidence 99988766554221 123459999999999999999999999987765554455678
Q ss_pred ccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh-------------hhccccC-CCCC
Q 042735 559 GTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM-------------RLDEMLD-PRLP 617 (667)
Q Consensus 559 Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~-------------~~~~~~~-~~~~ 617 (667)
||+.||||| |+.++|||||||++|||+||+.||...........+... ....... ...+
T Consensus 162 gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (299)
T d1ua2a_ 162 VTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFP 241 (299)
T ss_dssp CCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCC
T ss_pred cChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCC
Confidence 999999999 567899999999999999999998532211000000000 0000000 0000
Q ss_pred CCCCch---HHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 618 PPSPDV---QGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 618 ~~~~~~---~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
. .+.. ......+.+++.+||+.||++|||++|+++|.||...
T Consensus 242 ~-~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~Hp~f~~~ 286 (299)
T d1ua2a_ 242 G-IPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNR 286 (299)
T ss_dssp C-CCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSS
T ss_pred C-CChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhCCHhhCCC
Confidence 0 0000 0011356788999999999999999999999998643
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.8e-40 Score=339.56 Aligned_cols=228 Identities=21% Similarity=0.282 Sum_probs=177.1
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
+++|+..+.||+|+||.||+|+. .+|+.||||++..... ......+.+.+|+++|++++|||||++++++.+....++
T Consensus 40 ld~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~-~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~ 118 (350)
T d1rdqe_ 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKV-VKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM 118 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHH-HHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ccCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHc-cCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccc
Confidence 36899999999999999999986 5688999998753211 111234578999999999999999999999999999999
Q ss_pred EEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 499 IYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
||||+.+|+|...+.... ...|.||||+|||++.++.+||+|||+|+..... .
T Consensus 119 v~e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~---~ 195 (350)
T d1rdqe_ 119 VMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR---T 195 (350)
T ss_dssp EEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC---B
T ss_pred ccccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeeeecccc---c
Confidence 999999999988775421 1224599999999999999999999999976532 3
Q ss_pred ccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHHHHH
Q 042735 555 SALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQGKLI 628 (667)
Q Consensus 555 ~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (667)
.+.+||+.||||| |+.++|||||||++|||+||+.||..... .......... .+..+...+ .
T Consensus 196 ~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~----~~~~~~i~~~--~~~~p~~~s------~ 263 (350)
T d1rdqe_ 196 WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP----IQIYEKIVSG--KVRFPSHFS------S 263 (350)
T ss_dssp CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHHC--CCCCCTTCC------H
T ss_pred ccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCH----HHHHHHHhcC--CCCCCccCC------H
Confidence 4578999999999 68899999999999999999999863321 1111111111 122222221 2
Q ss_pred HHHHHHHhccccCCCCC-----CCHHHHHHHHHHhhhhhc
Q 042735 629 SIMEVAFSCLDVSPESR-----PTMQTITQQLLFSLVYFS 663 (667)
Q Consensus 629 ~~~~~~~~Cl~~~p~~R-----Pt~~ev~~~l~~~~~~~~ 663 (667)
++.+++.+||+.||.+| ||++|+++|.||....|.
T Consensus 264 ~~~~li~~~L~~dP~kR~~~~r~t~~ell~Hp~f~~~~~~ 303 (350)
T d1rdqe_ 264 DLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWI 303 (350)
T ss_dssp HHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTCCHH
T ss_pred HHHHHHHHHhhhCHHhccccccccHHHHHcCccccCCCHH
Confidence 46678889999999999 499999999999876553
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-39 Score=332.09 Aligned_cols=226 Identities=21% Similarity=0.289 Sum_probs=173.8
Q ss_pred HcCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEE
Q 042735 420 INDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~l 498 (667)
.++|+..+.||+|+||+||+|... +++.||||++.... .....+.+|+++|++++|||||++++++.+.+..|+
T Consensus 4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~-----~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~l 78 (321)
T d1tkia_ 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-----TDQVLVKKEISILNIARHRNILHLHESFESMEELVM 78 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-----HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEE
T ss_pred ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc-----ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEE
Confidence 367889999999999999999864 67889999986531 234568899999999999999999999999999999
Q ss_pred EEEecCCCChHHHhccccC--C-----------------------cccccccCCeeecC--CCceEEecccccccccCCC
Q 042735 499 IYEYLKRGSLATNLSNDAA--A-----------------------EELDISSKNVLLDL--EHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~~--~-----------------------~~~dlk~~NiLld~--~~~~kl~DFGla~~~~~~~ 551 (667)
|||||++|+|.+.+..... . .|.||||+|||++. ...+||+|||+++......
T Consensus 79 vmE~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~ 158 (321)
T d1tkia_ 79 IFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD 158 (321)
T ss_dssp EECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC
T ss_pred EEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhccccCC
Confidence 9999999999998865321 1 13499999999985 4589999999998765432
Q ss_pred CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCchHH
Q 042735 552 SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPDVQG 625 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (667)
......||+.|+||| |+.++||||+||++|||+||+.||..... .... ..+.......+......
T Consensus 159 -~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~----~~~~----~~i~~~~~~~~~~~~~~ 229 (321)
T d1tkia_ 159 -NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN----QQII----ENIMNAEYTFDEEAFKE 229 (321)
T ss_dssp -EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH----HHHH----HHHHHTCCCCCHHHHTT
T ss_pred -cccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCH----HHHH----HHHHhCCCCCChhhccC
Confidence 234568999999999 67899999999999999999999864321 1111 11111111111111111
Q ss_pred HHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 626 KLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 626 ~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
...++.+++.+||+.||++|||++|+++|.|+..
T Consensus 230 ~s~~~~~li~~~L~~dp~~R~s~~eil~hp~~~~ 263 (321)
T d1tkia_ 230 ISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQ 263 (321)
T ss_dssp SCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHS
T ss_pred CCHHHHHHHHHHccCChhHCcCHHHHhcCHhhcc
Confidence 1234678889999999999999999999999853
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-38 Score=324.55 Aligned_cols=226 Identities=25% Similarity=0.392 Sum_probs=161.8
Q ss_pred cCCcCcceeecccCeEEEEEEeCC------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHA 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~ 493 (667)
++|+..+.||+|+||+||+|+... ++.||||++..... ....+.+.+|+..+.++ +|||||.+++++.+.
T Consensus 13 ~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~---~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~ 89 (299)
T d1ywna1 13 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT---HSEHRALMSELKILIHIGHHLNVVNLLGACTKP 89 (299)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----C---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECST
T ss_pred HHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccC---cHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccC
Confidence 578889999999999999997532 35799999864322 23456788999888887 589999999998765
Q ss_pred -CceEEEEEecCCCChHHHhcccc----------------------------------------CCcccccccCCeeecC
Q 042735 494 -RHSILIYEYLKRGSLATNLSNDA----------------------------------------AAEELDISSKNVLLDL 532 (667)
Q Consensus 494 -~~~~lv~ey~~~g~L~~~l~~~~----------------------------------------~~~~~dlk~~NiLld~ 532 (667)
...++|||||++|+|.+++.... ...|.||||+|||++.
T Consensus 90 ~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NILl~~ 169 (299)
T d1ywna1 90 GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSE 169 (299)
T ss_dssp TSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECG
T ss_pred CCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCccceeECC
Confidence 46899999999999998875321 0113499999999999
Q ss_pred CCceEEecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCC-CCCCCCccCCCChhh
Q 042735 533 EHKAHVSDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGK-HPRGFVSSILPSPSV 603 (667)
Q Consensus 533 ~~~~kl~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~-~p~~~~~~~~~~~~~ 603 (667)
++.+||+|||+|+....... ..+..+||+.||||| |+.++|||||||++|||+||. +||..... ...
T Consensus 170 ~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~----~~~ 245 (299)
T d1ywna1 170 KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI----DEE 245 (299)
T ss_dssp GGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCC----SHH
T ss_pred CCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCH----HHH
Confidence 99999999999987654332 234568999999999 788999999999999999975 56643221 111
Q ss_pred hhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 604 INMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
....+.....+..+...+ .++.+++.+||+.||++||||+||+++|....
T Consensus 246 ~~~~~~~~~~~~~~~~~~------~~l~~li~~cl~~dP~~Rpt~~eil~~L~~il 295 (299)
T d1ywna1 246 FCRRLKEGTRMRAPDYTT------PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 295 (299)
T ss_dssp HHHHHHHTCCCCCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCccCC------HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 111112222233332222 24678888999999999999999999998654
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-38 Score=324.17 Aligned_cols=225 Identities=24% Similarity=0.386 Sum_probs=171.0
Q ss_pred cCCcCcceeecccCeEEEEEEe------CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEEeC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL------PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCSHA 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~------~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~~~ 493 (667)
++|+..+.||+|+||.||+|++ ..+..||||++..... .....+|.+|+.+++++ +|||||+++|+|.+.
T Consensus 23 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~---~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~ 99 (311)
T d1t46a_ 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH---LTEREALMSELKVLSYLGNHMNIVNLLGACTIG 99 (311)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccC---HHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeC
Confidence 5778889999999999999975 2346799999875432 33456799999999999 699999999999999
Q ss_pred CceEEEEEecCCCChHHHhccccC------------------------------------------CcccccccCCeeec
Q 042735 494 RHSILIYEYLKRGSLATNLSNDAA------------------------------------------AEELDISSKNVLLD 531 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~~~~------------------------------------------~~~~dlk~~NiLld 531 (667)
+..++|||||++|+|.+++..... ..|.||||+||+++
T Consensus 100 ~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~NIl~~ 179 (311)
T d1t46a_ 100 GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLT 179 (311)
T ss_dssp SSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEE
T ss_pred CEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeeccccccccccc
Confidence 999999999999999988753210 11349999999999
Q ss_pred CCCceEEecccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCC-CCCCccCCCChh
Q 042735 532 LEHKAHVSDFGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHP-RGFVSSILPSPS 602 (667)
Q Consensus 532 ~~~~~kl~DFGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p-~~~~~~~~~~~~ 602 (667)
.++.+|++|||+++........ .+..+||+.|+||| |+.++|||||||++|||+|++.| +.... ...
T Consensus 180 ~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~----~~~ 255 (311)
T d1t46a_ 180 HGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP----VDS 255 (311)
T ss_dssp TTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC----SSH
T ss_pred ccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCC----HHH
Confidence 9999999999999976544322 23468999999999 68899999999999999995544 43221 111
Q ss_pred hhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 603 VINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.....+.....+..+...+ ..+.+++.+||+.||++||||+||++.|...
T Consensus 256 ~~~~~i~~~~~~~~~~~~~------~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~ 305 (311)
T d1t46a_ 256 KFYKMIKEGFRMLSPEHAP------AEMYDIMKTCWDADPLKRPTFKQIVQLIEKQ 305 (311)
T ss_dssp HHHHHHHHTCCCCCCTTSC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCccccc------HHHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence 1111122222222222221 2467888999999999999999999988754
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.9e-39 Score=327.01 Aligned_cols=224 Identities=20% Similarity=0.354 Sum_probs=170.7
Q ss_pred cCCcCcceeecccCeEEEEEEeC------CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP------SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~------~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~ 494 (667)
++|...+.||+|+||.||+|.+. .+..||||++.... .......|.+|++++++++|||||+++|+|...+
T Consensus 20 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~---~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~ 96 (308)
T d1p4oa_ 20 EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA---SMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ 96 (308)
T ss_dssp GGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS---CHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS
T ss_pred HHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECccc---ChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCC
Confidence 57788899999999999999763 24679999986532 2234567999999999999999999999999999
Q ss_pred ceEEEEEecCCCChHHHhcccc----------------------------------CCcccccccCCeeecCCCceEEec
Q 042735 495 HSILIYEYLKRGSLATNLSNDA----------------------------------AAEELDISSKNVLLDLEHKAHVSD 540 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~----------------------------------~~~~~dlk~~NiLld~~~~~kl~D 540 (667)
..++||||+++|+|.+++.... ...|.||||+|||+|.++++||+|
T Consensus 97 ~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~~~Kl~D 176 (308)
T d1p4oa_ 97 PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGD 176 (308)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEECC
T ss_pred ceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCceEEEee
Confidence 9999999999999988764210 112449999999999999999999
Q ss_pred ccccccccCCCCC--cccccccccccCCC------CCCCchHHHHHHHHHHHHhCC-CCCCCCccCCCChhhhhhhhccc
Q 042735 541 FGIAKFLKPDSSN--WSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGK-HPRGFVSSILPSPSVINMRLDEM 611 (667)
Q Consensus 541 FGla~~~~~~~~~--~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~-~p~~~~~~~~~~~~~~~~~~~~~ 611 (667)
||+|+........ .+...||+.||||| |+.++|||||||++|||+||+ +|+..... ... ...+
T Consensus 177 FGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~----~~~----~~~i 248 (308)
T d1p4oa_ 177 FGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN----EQV----LRFV 248 (308)
T ss_dssp TTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH----HHH----HHHH
T ss_pred cccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCH----HHH----HHHH
Confidence 9999876543322 23457899999998 677999999999999999985 56543221 111 1122
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 612 LDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
.+...++..+.. ...+.+++.+||+.+|++||||+||+++|...
T Consensus 249 ~~~~~~~~p~~~---~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~ 292 (308)
T d1p4oa_ 249 MEGGLLDKPDNC---PDMLFELMRMCWQYNPKMRPSFLEIISSIKEE 292 (308)
T ss_dssp HTTCCCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGG
T ss_pred HhCCCCCCcccc---hHHHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence 222222211111 12577888999999999999999999987653
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.5e-39 Score=325.18 Aligned_cols=238 Identities=22% Similarity=0.283 Sum_probs=171.3
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||+||+|+. .+++.||||++...... ....+++.+|++++++++|||||++++++.+++..|+|
T Consensus 2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~--~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv 79 (298)
T d1gz8a_ 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTET--EGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLV 79 (298)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC---------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcC--hHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEE
Confidence 6899999999999999999986 56889999998653221 12245789999999999999999999999999999999
Q ss_pred EEecCCCChHHHhccc-------------------------cCCcccccccCCeeecCCCceEEecccccccccCCCCCc
Q 042735 500 YEYLKRGSLATNLSND-------------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~-------------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~ 554 (667)
|||+.++.+....... ....|.||||+|||++.++.+||+|||+|+.........
T Consensus 80 ~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~~ 159 (298)
T d1gz8a_ 80 FEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTY 159 (298)
T ss_dssp EECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBCT
T ss_pred EeecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcceeccCCcccc
Confidence 9999876543322111 112355999999999999999999999999876555455
Q ss_pred ccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC----------Chhhhhhhhccc--cCCC
Q 042735 555 SALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP----------SPSVINMRLDEM--LDPR 615 (667)
Q Consensus 555 ~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~----------~~~~~~~~~~~~--~~~~ 615 (667)
....||+.|+||| ++.++||||+||++|||+||+.||...+.... ............ ....
T Consensus 160 ~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 239 (298)
T d1gz8a_ 160 THEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPS 239 (298)
T ss_dssp TCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTT
T ss_pred eeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhccccccccccccc
Confidence 5678999999999 46789999999999999999999863221000 000000000000 0001
Q ss_pred CCCCCC-chH----HHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 616 LPPPSP-DVQ----GKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 616 ~~~~~~-~~~----~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.+.... ... .....+.+++.+||+.||++|||++|+++|.||...
T Consensus 240 ~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H~ff~~~ 289 (298)
T d1gz8a_ 240 FPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV 289 (298)
T ss_dssp SCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTC
T ss_pred cccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCCHhhccC
Confidence 111000 000 111356788899999999999999999999998643
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-38 Score=320.19 Aligned_cols=225 Identities=24% Similarity=0.381 Sum_probs=167.5
Q ss_pred cCCcCcceeecccCeEEEEEEeCC--------CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc-CCCCeeEEEEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPS--------KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI-RHRNIVKFYGFCS 491 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~--------~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~~~g~~~ 491 (667)
++|+..+.||+|+||.||+|+... +..||||++..... .....++.+|+..+.++ +|||||+++|+|.
T Consensus 13 ~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~---~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~ 89 (299)
T d1fgka_ 13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDAT---EKDLSDLISEMEMMKMIGKHKNIINLLGACT 89 (299)
T ss_dssp GGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCC---HHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred HHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccC---hHHHHHHHHHHHHHHHhcCCCeEEecccccc
Confidence 578888999999999999997532 23699999865432 23456799999999988 7999999999999
Q ss_pred eCCceEEEEEecCCCChHHHhccccC----------------------------------------CcccccccCCeeec
Q 042735 492 HARHSILIYEYLKRGSLATNLSNDAA----------------------------------------AEELDISSKNVLLD 531 (667)
Q Consensus 492 ~~~~~~lv~ey~~~g~L~~~l~~~~~----------------------------------------~~~~dlk~~NiLld 531 (667)
+.+..++|||||++|+|.+++..... ..|.||||+|||++
T Consensus 90 ~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiLl~ 169 (299)
T d1fgka_ 90 QDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVT 169 (299)
T ss_dssp SSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC
T ss_pred cCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeecccceeec
Confidence 99999999999999999998853321 11349999999999
Q ss_pred CCCceEEecccccccccCCCC--CcccccccccccCCC------CCCCchHHHHHHHHHHHHh-CCCCCCCCccCCCChh
Q 042735 532 LEHKAHVSDFGIAKFLKPDSS--NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIK-GKHPRGFVSSILPSPS 602 (667)
Q Consensus 532 ~~~~~kl~DFGla~~~~~~~~--~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~Ellt-G~~p~~~~~~~~~~~~ 602 (667)
.++.+||+|||+++....... ......||+.|+||| |+.|+|||||||++|||+| |++||..... ..
T Consensus 170 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~----~~ 245 (299)
T d1fgka_ 170 EDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV----EE 245 (299)
T ss_dssp TTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH----HH
T ss_pred CCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCH----HH
Confidence 999999999999997754332 233467999999999 7889999999999999998 6777653221 11
Q ss_pred hhhhhhccccCCCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 603 VINMRLDEMLDPRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.. ..+.....+..+...+ .++.+++.+||+.||++||||.||++.|....
T Consensus 246 ~~-~~i~~~~~~~~p~~~~------~~l~~li~~cl~~dP~~Rps~~eil~~L~~i~ 295 (299)
T d1fgka_ 246 LF-KLLKEGHRMDKPSNCT------NELYMMMRDCWHAVPSQRPTFKQLVEDLDRIV 295 (299)
T ss_dssp HH-HHHHTTCCCCCCSSCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HH-HHHHcCCCCCCCccch------HHHHHHHHHHccCCHhHCcCHHHHHHHHHHHh
Confidence 11 1111112222222222 24678889999999999999999999997653
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=8.4e-39 Score=321.39 Aligned_cols=228 Identities=24% Similarity=0.349 Sum_probs=163.6
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC----c
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR----H 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~----~ 495 (667)
++|+..+.||+|+||.||+|+. .+++.||||++......+ ....+.|.+|++++++++|||||++++++...+ .
T Consensus 7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~ 85 (277)
T d1o6ya_ 7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARD-PSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 85 (277)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTC-HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccC-HHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence 4688999999999999999986 568899999987644332 234567999999999999999999999997654 3
Q ss_pred eEEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 496 SILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
.|+||||+++|+|.+.+.... ...|.||||+|||++.++.++++|||.++......
T Consensus 86 ~~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~ 165 (277)
T d1o6ya_ 86 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSG 165 (277)
T ss_dssp EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTCEECC---
T ss_pred EEEEEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhhhhhhhcccc
Confidence 789999999999987664321 12245999999999999999999999998654332
Q ss_pred ---CCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCc
Q 042735 552 ---SNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622 (667)
Q Consensus 552 ---~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (667)
......+||+.||||| |+.++|||||||++|||+||+.||...... ......... ++..+...
T Consensus 166 ~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~----~~~~~~~~~--~~~~~~~~-- 237 (277)
T d1o6ya_ 166 NSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPV----SVAYQHVRE--DPIPPSAR-- 237 (277)
T ss_dssp -------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH----HHHHHHHHC--CCCCGGGT--
T ss_pred ccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHH----HHHHHHHhc--CCCCCchh--
Confidence 2234568999999999 677999999999999999999998633211 111111111 11111000
Q ss_pred hHHHHHHHHHHHHhccccCCCCCC-CHHHHHHHHHH
Q 042735 623 VQGKLISIMEVAFSCLDVSPESRP-TMQTITQQLLF 657 (667)
Q Consensus 623 ~~~~~~~~~~~~~~Cl~~~p~~RP-t~~ev~~~l~~ 657 (667)
......++.+++.+||+.||++|| |++++.+.|..
T Consensus 238 ~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r 273 (277)
T d1o6ya_ 238 HEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVR 273 (277)
T ss_dssp SSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHH
Confidence 001112466788899999999999 89999887764
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=1.1e-38 Score=322.20 Aligned_cols=236 Identities=23% Similarity=0.323 Sum_probs=170.1
Q ss_pred cCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILIY 500 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv~ 500 (667)
++|+..+.||+|+||+||+|+.++++.||||++..... .....+.|.+|+.++++++|||||++++++.+.+..+++|
T Consensus 2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~--~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~ 79 (286)
T d1ob3a_ 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKE--DEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVF 79 (286)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSG--GGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEE
T ss_pred CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhc--ChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEE
Confidence 67889999999999999999999999999999865432 1223467999999999999999999999999999999999
Q ss_pred EecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCccc
Q 042735 501 EYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWSA 556 (667)
Q Consensus 501 ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~~ 556 (667)
||+.++.+........ ...|.||||+|||++.++.+|++|||+|............
T Consensus 80 e~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~ 159 (286)
T d1ob3a_ 80 EHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTH 159 (286)
T ss_dssp ECCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-------
T ss_pred EeehhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccceecccCccccce
Confidence 9999887766554321 1234599999999999999999999999876654444445
Q ss_pred ccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC---------------Chhhhh-hhhccccC
Q 042735 557 LVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP---------------SPSVIN-MRLDEMLD 613 (667)
Q Consensus 557 ~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~---------------~~~~~~-~~~~~~~~ 613 (667)
..||+.|+||| |+.++||||+||++|||+||+.||........ ...... ........
T Consensus 160 ~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (286)
T d1ob3a_ 160 EIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFT 239 (286)
T ss_dssp --CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCC
T ss_pred ecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhcccccc
Confidence 67999999998 57899999999999999999999853211000 000000 00000000
Q ss_pred CCCCCCCCc-hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 614 PRLPPPSPD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 614 ~~~~~~~~~-~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
...+.+... .......+.+++.+||+.||++|||++|+++|.||.
T Consensus 240 ~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~Hp~f~ 285 (286)
T d1ob3a_ 240 VYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFK 285 (286)
T ss_dssp CCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGG
T ss_pred cccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccC
Confidence 000000000 001123567888999999999999999999998874
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-38 Score=319.55 Aligned_cols=221 Identities=21% Similarity=0.350 Sum_probs=167.4
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCc--hHHhHHHHHHHHHHHHhcC--CCCeeEEEEEEEeCCc
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSD--QIADQKEFFAEIEALTKIR--HRNIVKFYGFCSHARH 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~--~~~~~~~~~~E~~~l~~l~--H~niv~~~g~~~~~~~ 495 (667)
++|+..+.||+|+||+||+|+. .+++.||||++....... .....+.+.+|+.++++++ |||||++++++.+++.
T Consensus 4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~ 83 (273)
T d1xwsa_ 4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS 83 (273)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence 4688899999999999999986 568899999886432211 1111234678999999997 8999999999999999
Q ss_pred eEEEEEecCC-CChHHHhcccc------------------------CCcccccccCCeeecC-CCceEEecccccccccC
Q 042735 496 SILIYEYLKR-GSLATNLSNDA------------------------AAEELDISSKNVLLDL-EHKAHVSDFGIAKFLKP 549 (667)
Q Consensus 496 ~~lv~ey~~~-g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~-~~~~kl~DFGla~~~~~ 549 (667)
.++||||+.+ +++.+.+.... ...|.||||+|||++. ++.+||+|||+|+....
T Consensus 84 ~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~ 163 (273)
T d1xwsa_ 84 FVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKD 163 (273)
T ss_dssp EEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCS
T ss_pred EEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccccceeccc
Confidence 9999999986 56766554321 1224599999999995 47999999999987543
Q ss_pred CCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCCc
Q 042735 550 DSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSPD 622 (667)
Q Consensus 550 ~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (667)
. ..++.+||+.||||| ++.++||||+||++|||+||+.||..... +.. . ....+...+
T Consensus 164 ~--~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~------i~~----~--~~~~~~~~s- 228 (273)
T d1xwsa_ 164 T--VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE------IIR----G--QVFFRQRVS- 228 (273)
T ss_dssp S--CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH------HHH----C--CCCCSSCCC-
T ss_pred c--cccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCchH------Hhh----c--ccCCCCCCC-
Confidence 2 345678999999999 24578999999999999999999863211 110 1 111222222
Q ss_pred hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 623 VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 623 ~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.++.+++.+||+.||++|||++|++++.|+....
T Consensus 229 -----~~~~~li~~~L~~dp~~R~s~~eil~hp~~~~~~ 262 (273)
T d1xwsa_ 229 -----SECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVL 262 (273)
T ss_dssp -----HHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSCC
T ss_pred -----HHHHHHHHHHccCCHhHCcCHHHHhcCHhhCCCC
Confidence 2456788899999999999999999999986543
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-38 Score=323.79 Aligned_cols=235 Identities=23% Similarity=0.335 Sum_probs=176.9
Q ss_pred HcCCcCcceeecccCeEEEEEEe----CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCC-CCeeEEEEEEEeCC
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL----PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH-RNIVKFYGFCSHAR 494 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~----~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H-~niv~~~g~~~~~~ 494 (667)
+++|+..+.||+|+||+||+|+. .+|+.||||++............+.+.+|++++++++| ||||++++++.+..
T Consensus 23 l~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~ 102 (322)
T d1vzoa_ 23 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 102 (322)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred hhceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCC
Confidence 47899999999999999999975 24778999988643222222234568899999999987 89999999999999
Q ss_pred ceEEEEEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 495 HSILIYEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
..++||||+.+|+|.+.+.... ...|.||||+|||+|.++.+||+|||+|+.....
T Consensus 103 ~~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~ 182 (322)
T d1vzoa_ 103 KLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVAD 182 (322)
T ss_dssp EEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGG
T ss_pred ceeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeeccchhhhccc
Confidence 9999999999999988775432 1234599999999999999999999999876433
Q ss_pred CC-CcccccccccccCCC--------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCCCCCC
Q 042735 551 SS-NWSALVGTYRYVAPD--------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLPPPSP 621 (667)
Q Consensus 551 ~~-~~~~~~Gt~~y~aPE--------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (667)
.. ...+..||+.|+||| |+.++||||+||++|||+||+.||................. ...+..+...
T Consensus 183 ~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~--~~~~~~~~~~- 259 (322)
T d1vzoa_ 183 ETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRIL--KSEPPYPQEM- 259 (322)
T ss_dssp GGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHH--HCCCCCCTTS-
T ss_pred ccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcc--cCCCCCcccC-
Confidence 22 234567999999998 46689999999999999999999864432221111111111 1112222222
Q ss_pred chHHHHHHHHHHHHhccccCCCCCC-----CHHHHHHHHHHhhhhh
Q 042735 622 DVQGKLISIMEVAFSCLDVSPESRP-----TMQTITQQLLFSLVYF 662 (667)
Q Consensus 622 ~~~~~~~~~~~~~~~Cl~~~p~~RP-----t~~ev~~~l~~~~~~~ 662 (667)
..++.+++.+||+.||++|| |++|+++|.||..+.|
T Consensus 260 -----s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~Hpff~~i~~ 300 (322)
T d1vzoa_ 260 -----SALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINW 300 (322)
T ss_dssp -----CHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCH
T ss_pred -----CHHHHHHHHHHcccCHHHcCCCCcccHHHHHcCHhhcCCCH
Confidence 22466788899999999999 5899999999976554
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.2e-37 Score=313.87 Aligned_cols=238 Identities=18% Similarity=0.293 Sum_probs=164.0
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CC-CceEEEEecCCCCCCchHHhHHHHHHHHHHHHhc---CCCCeeEEEEEEEe--
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PS-KEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKI---RHRNIVKFYGFCSH-- 492 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~-~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l---~H~niv~~~g~~~~-- 492 (667)
.++|+..+.||+|+||+||+|+. .+ ++.||||++....... .....+.+|+.+++.+ +|||||+++++|..
T Consensus 6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~--~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~ 83 (305)
T d1blxa_ 6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEE--GMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR 83 (305)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTT--SCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccc--hHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccc
Confidence 36899999999999999999986 34 5679999875432211 1122466777776665 79999999999863
Q ss_pred ---CCceEEEEEecCCCChHHHhccc-------------------------cCCcccccccCCeeecCCCceEEeccccc
Q 042735 493 ---ARHSILIYEYLKRGSLATNLSND-------------------------AAAEELDISSKNVLLDLEHKAHVSDFGIA 544 (667)
Q Consensus 493 ---~~~~~lv~ey~~~g~L~~~l~~~-------------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla 544 (667)
....+++|||+++|.+....... ....|.||||+|||++.++.+||+|||++
T Consensus 84 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg~~ 163 (305)
T d1blxa_ 84 TDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA 163 (305)
T ss_dssp CSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSC
T ss_pred cccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecchhhh
Confidence 34679999999998765332211 11235599999999999999999999999
Q ss_pred ccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhh-------------
Q 042735 545 KFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVIN------------- 605 (667)
Q Consensus 545 ~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~------------- 605 (667)
+...... .....+||+.||||| |+.++||||+||++|||+||+.||...........+..
T Consensus 164 ~~~~~~~-~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~ 242 (305)
T d1blxa_ 164 RIYSFQM-ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRD 242 (305)
T ss_dssp CCCCGGG-GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTT
T ss_pred hhhcccc-cCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhccccc
Confidence 8654332 335678999999999 78999999999999999999999863321100000000
Q ss_pred hh-hccccCCCCCCCCCc-hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 606 MR-LDEMLDPRLPPPSPD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 606 ~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
.. ...........+... .......+.+++.+||+.||++|||++|+++|.||...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~Hpff~~i 299 (305)
T d1blxa_ 243 VALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDL 299 (305)
T ss_dssp CSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTC
T ss_pred ccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhcCc
Confidence 00 000000000000000 00011245678889999999999999999999998654
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.9e-36 Score=307.10 Aligned_cols=238 Identities=17% Similarity=0.222 Sum_probs=166.4
Q ss_pred HcCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe------
Q 042735 420 INDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH------ 492 (667)
Q Consensus 420 ~~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~------ 492 (667)
+++|+..+.||+|+||+||+|+. .+++.||||++...... ....+++.+|+++|++++||||+++++++..
T Consensus 9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~--~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~ 86 (318)
T d3blha1 9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEK--EGFPITALREIKILQLLKHENVVNLIEICRTKASPYN 86 (318)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CT--TSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC------
T ss_pred cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcc--hHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccc
Confidence 47899999999999999999986 57889999998654322 1234568899999999999999999999865
Q ss_pred --CCceEEEEEecCCCChHHHhccc------------------------cCCcccccccCCeeecCCCceEEeccccccc
Q 042735 493 --ARHSILIYEYLKRGSLATNLSND------------------------AAAEELDISSKNVLLDLEHKAHVSDFGIAKF 546 (667)
Q Consensus 493 --~~~~~lv~ey~~~g~L~~~l~~~------------------------~~~~~~dlk~~NiLld~~~~~kl~DFGla~~ 546 (667)
.+..++||||++++.+....... ....|.||||+|||++.++.+||+|||+++.
T Consensus 87 ~~~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~ 166 (318)
T d3blha1 87 RCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARA 166 (318)
T ss_dssp ----CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred ccCceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEeeecceeee
Confidence 34689999999988765443221 1123559999999999999999999999986
Q ss_pred ccCCC----CCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh---------
Q 042735 547 LKPDS----SNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM--------- 606 (667)
Q Consensus 547 ~~~~~----~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~--------- 606 (667)
..... ......+||+.|+||| |+.++||||+||++|||+||+.||...............
T Consensus 167 ~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~ 246 (318)
T d3blha1 167 FSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 246 (318)
T ss_dssp CCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTS
T ss_pred cccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCChhhc
Confidence 55322 1223467999999999 578999999999999999999998532210000000000
Q ss_pred ------hhccccCCCCCCCCCchHHH------HHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 607 ------RLDEMLDPRLPPPSPDVQGK------LISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 607 ------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
....... ............ ...+.+++.+||+.||++|||++|+++|.||...
T Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~Hpff~~~ 311 (318)
T d3blha1 247 PNVDNYELYEKLE-LVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSD 311 (318)
T ss_dssp TTCCCC--------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGSSS
T ss_pred cccchhhhhhhhc-ccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcChhhccC
Confidence 0000000 000001111111 1245678899999999999999999999999753
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6e-36 Score=303.38 Aligned_cols=236 Identities=20% Similarity=0.277 Sum_probs=172.7
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCCceEEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~~~~lv 499 (667)
++|+..+.||+|+||+||+|+. .+++.||||+++.... .....+++.+|+.++++++|||||++++++.+....++|
T Consensus 2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~--~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv 79 (292)
T d1unla_ 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDD--DEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLV 79 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCS--STTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhC--ChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEE
Confidence 5788999999999999999986 5678899999865432 223456799999999999999999999999999999999
Q ss_pred EEecCCCChHHHhcccc------------------------CCcccccccCCeeecCCCceEEecccccccccCCCCCcc
Q 042735 500 YEYLKRGSLATNLSNDA------------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSNWS 555 (667)
Q Consensus 500 ~ey~~~g~L~~~l~~~~------------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~~~ 555 (667)
+||+.++++...+.... ...|.||||+|||++.++.+||+|||.|+..........
T Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~~~ 159 (292)
T d1unla_ 80 FEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYS 159 (292)
T ss_dssp EECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSCCC
T ss_pred eeeccccccccccccccccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhcccCCCccce
Confidence 99999999877654332 122459999999999999999999999998765544444
Q ss_pred cccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCC-hhhhh-------------hhhccccC-
Q 042735 556 ALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPS-PSVIN-------------MRLDEMLD- 613 (667)
Q Consensus 556 ~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~-~~~~~-------------~~~~~~~~- 613 (667)
...+++.|+||| ++.++||||+||++|||+||+.|+......... ..... ........
T Consensus 160 ~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (292)
T d1unla_ 160 AEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPY 239 (292)
T ss_dssp SCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCC
T ss_pred eeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhccccccc
Confidence 556788899997 467899999999999999999996311100000 00000 00000000
Q ss_pred CCCC---CCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHh
Q 042735 614 PRLP---PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFS 658 (667)
Q Consensus 614 ~~~~---~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~ 658 (667)
+..+ ............+.+++.+||+.||.+|||++|+++|.||.
T Consensus 240 ~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~Hp~f~ 287 (292)
T d1unla_ 240 PMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFS 287 (292)
T ss_dssp CCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGS
T ss_pred ccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhcChhhc
Confidence 0000 00000001112466788899999999999999999999985
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.2e-36 Score=309.99 Aligned_cols=233 Identities=19% Similarity=0.274 Sum_probs=162.8
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC-----
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR----- 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~----- 494 (667)
++|+..+.||+|+||+||+|.. .+++.||||++..... .....+.+.+|+++|++++|||||+++++|...+
T Consensus 18 ~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~--~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~ 95 (346)
T d1cm8a_ 18 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ--SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF 95 (346)
T ss_dssp SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTS--SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred CcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhc--ChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCcccccc
Confidence 4688889999999999999986 5688999999875433 2234567899999999999999999999997654
Q ss_pred -ceEEEEEecCCCChHHHhcccc-----------------------CCcccccccCCeeecCCCceEEecccccccccCC
Q 042735 495 -HSILIYEYLKRGSLATNLSNDA-----------------------AAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 495 -~~~lv~ey~~~g~L~~~l~~~~-----------------------~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~ 550 (667)
..++||||+ +++|........ ...|.||||+|||++.++.+|++|||+|+.....
T Consensus 96 ~~~~lv~e~~-~~~l~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~ 174 (346)
T d1cm8a_ 96 TDFYLVMPFM-GTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSE 174 (346)
T ss_dssp CCCEEEEECC-SEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSS
T ss_pred ceEEEEEecc-cccHHHHHHhccccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcccccccccccccceeccCCc
Confidence 569999999 456665543321 1234599999999999999999999999876432
Q ss_pred CCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC-----------Chhhh-------h
Q 042735 551 SSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP-----------SPSVI-------N 605 (667)
Q Consensus 551 ~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~-----------~~~~~-------~ 605 (667)
.+...||+.|+||| ++.++||||+||++|||++|+.||........ ..... .
T Consensus 175 ---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (346)
T d1cm8a_ 175 ---MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEA 251 (346)
T ss_dssp ---CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHH
T ss_pred ---cccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhh
Confidence 34578999999999 47799999999999999999999863221000 00000 0
Q ss_pred hhhccccCCCCCCCC-Cc-hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 606 MRLDEMLDPRLPPPS-PD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 606 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
....... +...... .. .......+.+++.+||+.||++|||++|+++|.||...
T Consensus 252 ~~~~~~~-~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~ 307 (346)
T d1cm8a_ 252 KNYMKGL-PELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESL 307 (346)
T ss_dssp HHHHHHS-CCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTT
T ss_pred hhhhccC-CcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcC
Confidence 0000000 0000000 00 00111245688889999999999999999999998753
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.3e-36 Score=309.91 Aligned_cols=238 Identities=21% Similarity=0.254 Sum_probs=166.8
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeCC----c
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHAR----H 495 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~~----~ 495 (667)
++|+..+.||+|+||+||+|.. .+++.||||++.... .....+.+.+|+++|++++|||||++++++.... .
T Consensus 8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~---~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~ 84 (345)
T d1pmea_ 8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFE---HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK 84 (345)
T ss_dssp TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTT---CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhc---ChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccc
Confidence 4688889999999999999975 678999999986532 2334567999999999999999999999997653 2
Q ss_pred eEEEEEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 496 SILIYEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 496 ~~lv~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
.++++||+.+|+|.+.+..... ..|.||||+|||++.++.+||+|||+|+.......
T Consensus 85 ~~~l~~~~~~g~L~~~l~~~~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~ 164 (345)
T d1pmea_ 85 DVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHD 164 (345)
T ss_dssp CEEEEEECCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGC
T ss_pred eEEEEEeecCCchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCceeeccCCCc
Confidence 3566778889999988754322 12459999999999999999999999986543221
Q ss_pred ---CcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccC-----------CCChhhhh------
Q 042735 553 ---NWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSI-----------LPSPSVIN------ 605 (667)
Q Consensus 553 ---~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~-----------~~~~~~~~------ 605 (667)
.....+||+.|+||| |+.++||||+||++|||+||+.||...... .+......
T Consensus 165 ~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
T d1pmea_ 165 HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLK 244 (345)
T ss_dssp BCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHH
T ss_pred cceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhh
Confidence 234567999999999 467899999999999999999998632210 00000000
Q ss_pred -hhhccccCCCCCCCCCc-hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhh
Q 042735 606 -MRLDEMLDPRLPPPSPD-VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVY 661 (667)
Q Consensus 606 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~ 661 (667)
.............+... ......++.+++.+||+.||++|||++|++++.|+....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~hpf~~~~~ 302 (345)
T d1pmea_ 245 ARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYY 302 (345)
T ss_dssp HHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTTC
T ss_pred hhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccCC
Confidence 00000000000000000 000112467888999999999999999999999876443
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Probab=100.00 E-value=1.6e-35 Score=305.06 Aligned_cols=234 Identities=20% Similarity=0.302 Sum_probs=169.8
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeC--Cce
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHA--RHS 496 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~--~~~ 496 (667)
++|+..+.||+|+||+||+|+. .+++.||||++... ..+++.+|+++|.+++ |||||++++++... ...
T Consensus 35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~-------~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~ 107 (328)
T d3bqca1 35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-------KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTP 107 (328)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS-------CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSE
T ss_pred cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH-------HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCce
Confidence 6899999999999999999986 56889999998642 1346889999999996 99999999999754 568
Q ss_pred EEEEEecCCCChHHHhcc---------------------ccCCcccccccCCeeecCCC-ceEEecccccccccCCCCCc
Q 042735 497 ILIYEYLKRGSLATNLSN---------------------DAAAEELDISSKNVLLDLEH-KAHVSDFGIAKFLKPDSSNW 554 (667)
Q Consensus 497 ~lv~ey~~~g~L~~~l~~---------------------~~~~~~~dlk~~NiLld~~~-~~kl~DFGla~~~~~~~~~~ 554 (667)
++|||||++|+|...... .....|.||||+|||++.++ .+||+|||+|+...... ..
T Consensus 108 ~~v~e~~~~~~L~~~~~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~-~~ 186 (328)
T d3bqca1 108 ALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ-EY 186 (328)
T ss_dssp EEEEECCCSCBGGGTTTSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTC-CC
T ss_pred eEEEeecCCCcHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccceeccCCC-cc
Confidence 999999999998764321 01123569999999999655 69999999998765443 23
Q ss_pred ccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCCh----------hhh----------hhh
Q 042735 555 SALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSP----------SVI----------NMR 607 (667)
Q Consensus 555 ~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~----------~~~----------~~~ 607 (667)
...+||+.|+||| |+.++||||+||++|||++|+.||.......... ... ...
T Consensus 187 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~ 266 (328)
T d3bqca1 187 NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPR 266 (328)
T ss_dssp CSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGG
T ss_pred cccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcc
Confidence 4568999999998 5778999999999999999999975321100000 000 000
Q ss_pred hccccCCCCC------CCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhhhh
Q 042735 608 LDEMLDPRLP------PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLVYF 662 (667)
Q Consensus 608 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~~~ 662 (667)
.......... ...........++.+++.+||+.||++|||++|+++|.||..+.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~Hp~F~~v~~ 327 (328)
T d3bqca1 267 FNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVK 327 (328)
T ss_dssp GGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTSCC
T ss_pred cchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCCCC
Confidence 0000000000 000001111235678889999999999999999999999987764
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-35 Score=306.07 Aligned_cols=230 Identities=22% Similarity=0.255 Sum_probs=161.2
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC------C
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA------R 494 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~------~ 494 (667)
+|...++||+|+||+||+|+. .+++.||||++..... .+.+|+++|++++|||||++++++... .
T Consensus 21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~--------~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~ 92 (350)
T d1q5ka_ 21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR--------FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEV 92 (350)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS--------SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCC
T ss_pred CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch--------HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCce
Confidence 577788999999999999987 4688999999865321 134799999999999999999998643 3
Q ss_pred ceEEEEEecCCCChHHHhc---cc------------------------cCCcccccccCCeeecCCC-ceEEeccccccc
Q 042735 495 HSILIYEYLKRGSLATNLS---ND------------------------AAAEELDISSKNVLLDLEH-KAHVSDFGIAKF 546 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~---~~------------------------~~~~~~dlk~~NiLld~~~-~~kl~DFGla~~ 546 (667)
..++|||||++|.+..... .. ....|.||||+|||++.++ .+||+|||+++.
T Consensus 93 ~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~ 172 (350)
T d1q5ka_ 93 YLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 172 (350)
T ss_dssp EEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEE
T ss_pred EEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccchhh
Confidence 4789999999774433221 11 1123459999999999775 899999999987
Q ss_pred ccCCCCCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC-----------Chhhhhhhh
Q 042735 547 LKPDSSNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP-----------SPSVINMRL 608 (667)
Q Consensus 547 ~~~~~~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~-----------~~~~~~~~~ 608 (667)
..... ...+.+||+.|+||| |+.++||||+||++|||+||+.||........ .........
T Consensus 173 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~ 251 (350)
T d1q5ka_ 173 LVRGE-PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMN 251 (350)
T ss_dssp CCTTS-CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHC
T ss_pred ccCCc-ccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhc
Confidence 65433 234568999999998 67899999999999999999999863321100 000000000
Q ss_pred ccccCCCCCCCCC------chHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhhh
Q 042735 609 DEMLDPRLPPPSP------DVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSLV 660 (667)
Q Consensus 609 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~~ 660 (667)
....+...+.... ........+.+++.+||+.||++|||++|+++|.||...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~ 309 (350)
T d1q5ka_ 252 PNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDEL 309 (350)
T ss_dssp C---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGG
T ss_pred cchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccc
Confidence 0001111111000 000112246678889999999999999999999998653
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-34 Score=300.81 Aligned_cols=236 Identities=19% Similarity=0.268 Sum_probs=160.6
Q ss_pred cCCcCcceeecccCeEEEEEEeC-CCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEe------C
Q 042735 421 NDFDAKYCIGSGRHGSVYRAELP-SKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSH------A 493 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~------~ 493 (667)
++|+..+.||+|+||+||+|+.. +++.||||++...... ....+.+.+|+.++++++|||||++++++.. .
T Consensus 17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~--~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~ 94 (355)
T d2b1pa1 17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQN--QTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF 94 (355)
T ss_dssp TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSS--HHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcC--HHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccC
Confidence 57888999999999999999864 6899999998764432 2334578999999999999999999999964 3
Q ss_pred CceEEEEEecCCCChHHHhcc---------------------ccCCcccccccCCeeecCCCceEEecccccccccCCCC
Q 042735 494 RHSILIYEYLKRGSLATNLSN---------------------DAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSS 552 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~~~l~~---------------------~~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~ 552 (667)
...|+|||||.+|.+...... .....|.||||+|||++.++.+|++|||+++......
T Consensus 95 ~~~~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~- 173 (355)
T d2b1pa1 95 QDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF- 173 (355)
T ss_dssp CEEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC---------
T ss_pred ceeEEEEeccchHHHHhhhcCCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechhhhhcccccc-
Confidence 678999999987655432111 1123356999999999999999999999998755432
Q ss_pred CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCC-----------Chhhh---hhhhcccc
Q 042735 553 NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILP-----------SPSVI---NMRLDEML 612 (667)
Q Consensus 553 ~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~-----------~~~~~---~~~~~~~~ 612 (667)
..+..+||+.|+||| |+.++||||+||++|||++|+.||........ .+... ........
T Consensus 174 ~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 253 (355)
T d2b1pa1 174 MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYV 253 (355)
T ss_dssp -------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHH
T ss_pred ccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHh
Confidence 334568999999999 67899999999999999999999853221000 00000 00000000
Q ss_pred CC----------------CCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 613 DP----------------RLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 613 ~~----------------~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.. ..+............+.+++.+|++.||++|||++|+++|.|+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~Hpw~~~ 316 (355)
T d2b1pa1 254 ENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 316 (355)
T ss_dssp HTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGG
T ss_pred hcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcCcccCC
Confidence 00 001111111223456788999999999999999999999999975
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-34 Score=300.51 Aligned_cols=234 Identities=19% Similarity=0.288 Sum_probs=166.5
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCeeEEEEEEEeC-----C
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNIVKFYGFCSHA-----R 494 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~~~~-----~ 494 (667)
++|+..+.||+|+||+||+|+. .+++.||||++..... .....+.+.+|++++++++|||||++++++... .
T Consensus 18 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~--~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~ 95 (348)
T d2gfsa1 18 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ--SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF 95 (348)
T ss_dssp TTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTS--SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTC
T ss_pred CCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhc--ChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccC
Confidence 5688899999999999999985 5689999999875433 234456789999999999999999999998643 3
Q ss_pred ceEEEEEecCCCChHHHhccccC-----------------------CcccccccCCeeecCCCceEEecccccccccCCC
Q 042735 495 HSILIYEYLKRGSLATNLSNDAA-----------------------AEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDS 551 (667)
Q Consensus 495 ~~~lv~ey~~~g~L~~~l~~~~~-----------------------~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~ 551 (667)
..++++||+.+|+|.+.+..... ..|.||||+|||++.++.+|++|||++.....
T Consensus 96 ~~~~i~~~~~gg~L~~~~~~~~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~-- 173 (348)
T d2gfsa1 96 NDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDD-- 173 (348)
T ss_dssp CCCEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC----CCTG--
T ss_pred ceEEEEEeecCCchhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccchhcccCc--
Confidence 45778889999999988764432 22459999999999999999999999976432
Q ss_pred CCcccccccccccCCC-------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhh---------------hhc
Q 042735 552 SNWSALVGTYRYVAPD-------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINM---------------RLD 609 (667)
Q Consensus 552 ~~~~~~~Gt~~y~aPE-------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~---------------~~~ 609 (667)
...+..||+.|+||| ++.++||||+||++|||++|+.||...+.......+... ...
T Consensus 174 -~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 252 (348)
T d2gfsa1 174 -EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESAR 252 (348)
T ss_dssp -GGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHH
T ss_pred -ccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhh
Confidence 234568999999999 467999999999999999999998532211000000000 000
Q ss_pred cccC--CCCCCCCCc--hHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhh
Q 042735 610 EMLD--PRLPPPSPD--VQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLFSL 659 (667)
Q Consensus 610 ~~~~--~~~~~~~~~--~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~~~ 659 (667)
.... +..+..... .......+.+++.+||+.||++|||++|+++|.||..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~Hp~f~~ 306 (348)
T d2gfsa1 253 NYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 306 (348)
T ss_dssp HHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTT
T ss_pred hhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhcCHhhCC
Confidence 0000 001100000 0011134668889999999999999999999999864
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.5e-33 Score=286.23 Aligned_cols=225 Identities=16% Similarity=0.178 Sum_probs=154.0
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCe-eEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI-VKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~ni-v~~~g~~~~~~~~~l 498 (667)
++|+..+.||+|+||+||+|+. .+++.||||.+..... .+++.+|++++++++|+|+ +.+.+++.+++..++
T Consensus 7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~------~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~i 80 (299)
T d1ckia_ 7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK------HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM 80 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT------SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEE
T ss_pred CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc------CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEE
Confidence 3588899999999999999986 5688999998764321 1247889999999987665 555566677888999
Q ss_pred EEEecCCCChHHHhcc-c------------------------cCCcccccccCCeeec---CCCceEEecccccccccCC
Q 042735 499 IYEYLKRGSLATNLSN-D------------------------AAAEELDISSKNVLLD---LEHKAHVSDFGIAKFLKPD 550 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~-~------------------------~~~~~~dlk~~NiLld---~~~~~kl~DFGla~~~~~~ 550 (667)
||||+.+ ++...+.. . ....|.||||+|||++ .+..+|++|||+|+.....
T Consensus 81 vme~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~ 159 (299)
T d1ckia_ 81 VMELLGP-SLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA 159 (299)
T ss_dssp EEECCCC-BHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCT
T ss_pred EEEEcCC-chhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceecccc
Confidence 9999965 55443321 1 1123559999999875 4567999999999976543
Q ss_pred CC-------CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhccccCCCCC
Q 042735 551 SS-------NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLDEMLDPRLP 617 (667)
Q Consensus 551 ~~-------~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (667)
.. ......||+.||||| |+.++|||||||++|||+||+.||................ ........+
T Consensus 160 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~-~~~~~~~~~ 238 (299)
T d1ckia_ 160 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERIS-EKKMSTPIE 238 (299)
T ss_dssp TTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHH-HHHHHSCHH
T ss_pred ccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhh-cccCCCChh
Confidence 21 124568999999999 7889999999999999999999986433221111111000 000000000
Q ss_pred CCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Q 042735 618 PPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLL 656 (667)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~ 656 (667)
...+ ....++.+++..||+.+|++||+++++.+.|.
T Consensus 239 ~~~~---~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~ 274 (299)
T d1ckia_ 239 VLCK---GYPSEFATYLNFCRSLRFDDKPDYSYLRQLFR 274 (299)
T ss_dssp HHTT---TSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHH
T ss_pred Hhcc---CCCHHHHHHHHHHccCChhHCcCHHHHHHHHH
Confidence 0000 11134677888999999999999987765544
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=100.00 E-value=4.4e-33 Score=281.35 Aligned_cols=224 Identities=16% Similarity=0.195 Sum_probs=161.9
Q ss_pred cCCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCC-CCeeEEEEEEEeCCceEE
Q 042735 421 NDFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRH-RNIVKFYGFCSHARHSIL 498 (667)
Q Consensus 421 ~~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H-~niv~~~g~~~~~~~~~l 498 (667)
++|...+.||+|+||+||+|+. .+++.||||.+..... ...+.+|++.+..+.| +|++.+++++.+....++
T Consensus 5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~------~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~ 78 (293)
T d1csna_ 5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD------APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVL 78 (293)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT------SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEE
T ss_pred CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC------cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEE
Confidence 4688899999999999999986 4688999998754322 1246788899999975 999999999999999999
Q ss_pred EEEecCCCChHHHhcccc-------------------------CCcccccccCCeeecC-----CCceEEeccccccccc
Q 042735 499 IYEYLKRGSLATNLSNDA-------------------------AAEELDISSKNVLLDL-----EHKAHVSDFGIAKFLK 548 (667)
Q Consensus 499 v~ey~~~g~L~~~l~~~~-------------------------~~~~~dlk~~NiLld~-----~~~~kl~DFGla~~~~ 548 (667)
||||+ +|+|.+.+.... ...|.||||+|||++. ++.+||+|||+|+...
T Consensus 79 vme~~-~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~ 157 (293)
T d1csna_ 79 VIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYR 157 (293)
T ss_dssp EEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESB
T ss_pred EEEec-CCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEcc
Confidence 99999 688887664321 1224599999999974 5789999999999765
Q ss_pred CCCC-------CcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhhhhhhhc-cccC-
Q 042735 549 PDSS-------NWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSVINMRLD-EMLD- 613 (667)
Q Consensus 549 ~~~~-------~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~~~~~~~-~~~~- 613 (667)
.... .....+||+.||||| |+.++|||||||++|||+||+.||.................. ....
T Consensus 158 ~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~ 237 (293)
T d1csna_ 158 DPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPL 237 (293)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCH
T ss_pred cCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCCh
Confidence 3221 233568999999999 678999999999999999999998643321111000000000 0000
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHH
Q 042735 614 PRLPPPSPDVQGKLISIMEVAFSCLDVSPESRPTMQTITQQLLF 657 (667)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev~~~l~~ 657 (667)
+.+.... ..++.+++..|+..+|++||+++.+.+.+..
T Consensus 238 ~~l~~~~------p~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~ 275 (293)
T d1csna_ 238 RELCAGF------PEEFYKYMHYARNLAFDATPDYDYLQGLFSK 275 (293)
T ss_dssp HHHTTTS------CHHHHHHHHHHHHCCTTCCCCHHHHHHHHHH
T ss_pred HHhcCCC------CHHHHHHHHHHhcCCcccCcCHHHHHHHHHH
Confidence 0001111 1246678889999999999998888765544
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.97 E-value=3.3e-30 Score=263.53 Aligned_cols=249 Identities=27% Similarity=0.451 Sum_probs=197.3
Q ss_pred CCCEEEccCccccc--cCCccccCCCCCCeeeccc-cccceeCCCCCcc-cccCEEEcccccccccCCccccCCCCccEE
Q 042735 28 SLVKLGLGGNQFRG--SLPSSVGNLSSLRYLFLFE-NNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERV 103 (667)
Q Consensus 28 ~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 103 (667)
.++.|+|++|.+++ .+|.++++|++|++|+|++ |+++|.+|..++. .+|++|+|++|++.+..+..+..+..|+.+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 46777777777765 4667777777777777775 6777777777766 357777777777777777777777788888
Q ss_pred EeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCC-CEEECcCCccCCccCccCCCCCCCCEEEccCCcC
Q 042735 104 IVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNL-TFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNI 182 (667)
Q Consensus 104 ~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 182 (667)
+++.|.+.+.+|..+.++++|+.+++++|.+.+.+|..+..+.++ +.+++++|++.+..|..+..+..+ .++++.+..
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~ 209 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 888888888888888888888888888888888888878777775 778888888888878777776544 688888888
Q ss_pred CCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhh
Q 042735 183 TRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESL 262 (667)
Q Consensus 183 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 262 (667)
.+.+|..+..+++++.+++++|.+.+.+| .++.+++|+.|+|++|+++|.+|..|+++++|++|+|++|+++|.+|. +
T Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~ 287 (313)
T d1ogqa_ 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-c
Confidence 88888888888888888888888876544 577888888888888888888888888888888888888888888774 5
Q ss_pred hcccCCCeecCCCccCc
Q 042735 263 GNLLKLHYLDLSKYQFI 279 (667)
Q Consensus 263 ~~l~~L~~L~ls~n~~~ 279 (667)
+++++|+.+++++|++.
T Consensus 288 ~~L~~L~~l~l~~N~~l 304 (313)
T d1ogqa_ 288 GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp TTGGGSCGGGTCSSSEE
T ss_pred ccCCCCCHHHhCCCccc
Confidence 77888888888888754
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=3.9e-30 Score=262.92 Aligned_cols=248 Identities=27% Similarity=0.380 Sum_probs=173.6
Q ss_pred CCCeeeccccccce--eCCCCCcc-cccCEEEccc-ccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEE
Q 042735 52 SLRYLFLFENNLSG--SIPPSVGN-LMLTVLALEN-NHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRI 127 (667)
Q Consensus 52 ~L~~L~L~~n~l~~--~~p~~~~~-~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 127 (667)
+++.|+|++|.+.+ .+|..+++ ..|++|+|++ |.+.|.+|..+.++++|++|++++|++.+..+..+..+++|+.+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 56777777777765 46666666 3477777765 66777777777777777777777777777767667777777777
Q ss_pred EccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCC-CEEEccCCcCCCCcCccccCCCCcCeeeccCCcc
Q 042735 128 SLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKL-STLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHI 206 (667)
Q Consensus 128 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 206 (667)
+++.|.+.+.+|..++.+++++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+.++..+ .++++.+.+
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~ 209 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 777777777777777777777777777777777777766666654 667777777777666666665443 577777777
Q ss_pred cccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhh
Q 042735 207 VGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKEL 286 (667)
Q Consensus 207 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l 286 (667)
.+.+|..+..+++|+.+++++|.+.+.+| .++.+++|+.|+|++|+++|.+|.+++++++|+.|+|++|++.|.+|. +
T Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~ 287 (313)
T d1ogqa_ 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-c
Confidence 77777777777777777777777765443 466677777777777777777777777777777777777777777764 4
Q ss_pred hcCCCCCEEECcCCCC
Q 042735 287 GKLVQLSELELSHNFL 302 (667)
Q Consensus 287 ~~l~~L~~L~l~~n~l 302 (667)
+.+.+|+.+++++|+.
T Consensus 288 ~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 288 GNLQRFDVSAYANNKC 303 (313)
T ss_dssp TTGGGSCGGGTCSSSE
T ss_pred ccCCCCCHHHhCCCcc
Confidence 5666777777777753
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=5.1e-30 Score=267.73 Aligned_cols=231 Identities=15% Similarity=0.203 Sum_probs=159.6
Q ss_pred CCcCcceeecccCeEEEEEEe-CCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-----------CCCeeEEEEE
Q 042735 422 DFDAKYCIGSGRHGSVYRAEL-PSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-----------HRNIVKFYGF 489 (667)
Q Consensus 422 ~f~~~~~lg~g~~g~vy~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-----------H~niv~~~g~ 489 (667)
+|...+.||+|+||+||+|+. .+|+.||||+++.. ....+.+.+|++++++++ |||||+++++
T Consensus 14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~-----~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~ 88 (362)
T d1q8ya_ 14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-----KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDH 88 (362)
T ss_dssp TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-----HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEE
T ss_pred cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecc-----ccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEE
Confidence 488899999999999999986 56889999998642 123456788998888775 5789999988
Q ss_pred EEe--CCceEEEEEecCCCChHH----------------------------HhccccCCcccccccCCeeecCCCc----
Q 042735 490 CSH--ARHSILIYEYLKRGSLAT----------------------------NLSNDAAAEELDISSKNVLLDLEHK---- 535 (667)
Q Consensus 490 ~~~--~~~~~lv~ey~~~g~L~~----------------------------~l~~~~~~~~~dlk~~NiLld~~~~---- 535 (667)
+.. ....+++|+++..+.... +++......|.||||+|||++.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~ 168 (362)
T d1q8ya_ 89 FNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENL 168 (362)
T ss_dssp EEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTE
T ss_pred eeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCccccc
Confidence 864 456677888776654321 1122233446699999999987654
Q ss_pred --eEEecccccccccCCCCCcccccccccccCCC------CCCCchHHHHHHHHHHHHhCCCCCCCCccCCCChhh--hh
Q 042735 536 --AHVSDFGIAKFLKPDSSNWSALVGTYRYVAPD------YRKKCDVYSFRVLALEVIKGKHPRGFVSSILPSPSV--IN 605 (667)
Q Consensus 536 --~kl~DFGla~~~~~~~~~~~~~~Gt~~y~aPE------~~~~~DV~sfGvvl~ElltG~~p~~~~~~~~~~~~~--~~ 605 (667)
+|++|||.|+..... ....+||+.|+||| |+.++||||+||+++||+||+.||............ ..
T Consensus 169 ~~~kl~dfg~s~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~ 245 (362)
T d1q8ya_ 169 IQIKIADLGNACWYDEH---YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIA 245 (362)
T ss_dssp EEEEECCCTTCEETTBC---CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHH
T ss_pred ceeeEeecccccccccc---cccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHH
Confidence 999999999865432 23568999999999 788999999999999999999998532211000000 00
Q ss_pred -----------------hhhccccC-----CCCCC------------CCCchHHHHHHHHHHHHhccccCCCCCCCHHHH
Q 042735 606 -----------------MRLDEMLD-----PRLPP------------PSPDVQGKLISIMEVAFSCLDVSPESRPTMQTI 651 (667)
Q Consensus 606 -----------------~~~~~~~~-----~~~~~------------~~~~~~~~~~~~~~~~~~Cl~~~p~~RPt~~ev 651 (667)
.......+ ..... ...........+.+++.+|++.||++|||++|+
T Consensus 246 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~ 325 (362)
T d1q8ya_ 246 QIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGL 325 (362)
T ss_dssp HHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHH
T ss_pred HHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHH
Confidence 00000000 00000 001112344568889999999999999999999
Q ss_pred HHHHHHhhh
Q 042735 652 TQQLLFSLV 660 (667)
Q Consensus 652 ~~~l~~~~~ 660 (667)
++|.||..+
T Consensus 326 L~Hp~f~~~ 334 (362)
T d1q8ya_ 326 VNHPWLKDT 334 (362)
T ss_dssp HTCGGGTTC
T ss_pred hcCcccCCC
Confidence 999999744
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=6.6e-26 Score=237.97 Aligned_cols=283 Identities=24% Similarity=0.306 Sum_probs=181.5
Q ss_pred CCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEc
Q 042735 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLAL 81 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L 81 (667)
+.+|+.|++++|.|+.+ +++..+++|++|+|++|+|++. | .++++++|++|++++|++.+ +++.....+|+.|++
T Consensus 43 l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~-i~~l~~l~~L~~L~~ 117 (384)
T d2omza2 43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIAD-ITPLANLTNLTGLTL 117 (384)
T ss_dssp HTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEEC
T ss_pred hCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccc-ccccccccccccccc
Confidence 46799999999999875 4577899999999999999864 3 38999999999999999875 333323356999999
Q ss_pred ccccccccCCccccCCCCccEEEeeCccccc-----------------------------------------ccCccCCC
Q 042735 82 ENNHFTGNLRHNICRNGALERVIVGGNHFRG-----------------------------------------PIPKCLRN 120 (667)
Q Consensus 82 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-----------------------------------------~~p~~l~~ 120 (667)
++|.+++..+. .....+.......|.+.. ........
T Consensus 118 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (384)
T d2omza2 118 FNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195 (384)
T ss_dssp CSSCCCCCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred ccccccccccc--cccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccc
Confidence 88877643221 111222222222221110 11233455
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeee
Q 042735 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFD 200 (667)
Q Consensus 121 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 200 (667)
+++++.+++++|.+++..+ +...++|+.|++++|.+.. .+.+..+++|+.|++++|.+++..+ +..+++|+.|+
T Consensus 196 l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~ 269 (384)
T d2omza2 196 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 269 (384)
T ss_dssp CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred ccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCCc--ccccccCCEee
Confidence 6677777777777665433 4556677777777776643 2345666777777777777765432 56667777777
Q ss_pred ccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCcc
Q 042735 201 LSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQ 280 (667)
Q Consensus 201 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~ 280 (667)
+++|.+.+.. .+..++.++.+.++.|.+.+ ...+..+++++.|++++|++++.. .+..+++|+.|++++|++.+
T Consensus 270 l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~ 343 (384)
T d2omza2 270 LGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD 343 (384)
T ss_dssp CCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC
T ss_pred ccCcccCCCC--cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC
Confidence 7777665432 35566667777777776653 234566667777777777776643 25666677777777766543
Q ss_pred ccchhhhcCCCCCEEECcCCCCCCc
Q 042735 281 ELPKELGKLVQLSELELSHNFLGRE 305 (667)
Q Consensus 281 ~~p~~l~~l~~L~~L~l~~n~l~~~ 305 (667)
++ .++.+++|++|++++|++++-
T Consensus 344 -l~-~l~~l~~L~~L~l~~N~l~~l 366 (384)
T d2omza2 344 -VS-SLANLTNINWLSAGHNQISDL 366 (384)
T ss_dssp -CG-GGGGCTTCCEEECCSSCCCBC
T ss_pred -Ch-hHcCCCCCCEEECCCCcCCCC
Confidence 33 466677777777777766543
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=1.4e-24 Score=220.50 Aligned_cols=281 Identities=20% Similarity=0.274 Sum_probs=224.1
Q ss_pred CcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEccc
Q 042735 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALEN 83 (667)
Q Consensus 5 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~ 83 (667)
++.++-+++.++.+ |..+ .++|++|+|++|+|+...+.+|.++++|++|++++|.+....|..|.. ..|+.|++++
T Consensus 12 ~~~~~C~~~~L~~l-P~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~ 88 (305)
T d1xkua_ 12 LRVVQCSDLGLEKV-PKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88 (305)
T ss_dssp TTEEECTTSCCCSC-CCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCCcc-CCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence 56788888888864 5555 368999999999998666668999999999999999998777777876 5699999999
Q ss_pred ccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccc--cccchhhhcCCCCCEEECcCCccCCc
Q 042735 84 NHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMR--GTISEAFGIYLNLTFLDISDNNFFGE 161 (667)
Q Consensus 84 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~ 161 (667)
|+++. +|..+ ...+..|.+..|.+.+..+..+.....++.++...|... ...+..+..+++|+.+++++|.+..
T Consensus 89 n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~- 164 (305)
T d1xkua_ 89 NQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 164 (305)
T ss_dssp SCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-
Confidence 99874 34332 357888889999888776667778888889988887543 3345678889999999999998854
Q ss_pred cCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCC
Q 042735 162 IASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSL 241 (667)
Q Consensus 162 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 241 (667)
+|.. .+++|+.|++++|.+.+..+..+.+++.++.|++++|.+.+..+..|.++++|+.|+|++|.++ .+|.+|..+
T Consensus 165 l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l 241 (305)
T d1xkua_ 165 IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 241 (305)
T ss_dssp CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccc
Confidence 4443 3678999999999999888889999999999999999999888888999999999999999987 568889999
Q ss_pred CCCCeeeccCCcCCccchhhh------hcccCCCeecCCCccCc--cccchhhhcCCCCCEE
Q 042735 242 TKLEFLNLSTNRFSSLIPESL------GNLLKLHYLDLSKYQFI--QELPKELGKLVQLSEL 295 (667)
Q Consensus 242 ~~L~~L~Ls~N~l~~~~p~~~------~~l~~L~~L~ls~n~~~--~~~p~~l~~l~~L~~L 295 (667)
++|++|+|++|+++......| ..+.+|+.|++++|.+. ...|.+|.-+.....+
T Consensus 242 ~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~~ 303 (305)
T d1xkua_ 242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303 (305)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred cCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCccc
Confidence 999999999999987644443 34678999999999863 3345555555444443
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=4.1e-24 Score=216.94 Aligned_cols=265 Identities=20% Similarity=0.201 Sum_probs=185.0
Q ss_pred CCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcccccccccCCccccCCCCccEEEee
Q 042735 28 SLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERVIVG 106 (667)
Q Consensus 28 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 106 (667)
.++.++=+++.++ .+|..+ .++|++|+|++|+|+...+..|.. ..|+.|++++|.+....+..|..+..|+.|+++
T Consensus 11 ~~~~~~C~~~~L~-~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 11 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEEecCCCCC-ccCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 4566666666776 456655 356888888888777544445655 458888888888777667777777888888888
Q ss_pred CcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccC--CccCccCCCCCCCCEEEccCCcCCC
Q 042735 107 GNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFF--GEIASNWGKCPKLSTLNVSMNNITR 184 (667)
Q Consensus 107 ~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~ 184 (667)
+|+++.. |.. ..+.++.|++..|.+.+..+..+.....+..++...|... ...+..+..+++|+.+++++|.+..
T Consensus 88 ~n~l~~l-~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~ 164 (305)
T d1xkua_ 88 KNQLKEL-PEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 164 (305)
T ss_dssp SSCCSBC-CSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCccCcC-ccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence 8877643 332 3456777888888777766667777777777777776432 2334566777778888888877764
Q ss_pred CcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhc
Q 042735 185 SIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGN 264 (667)
Q Consensus 185 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 264 (667)
+|.. .+++|+.|++++|...+..+..|.+++.++.|++++|.+.+..+..+.++++|++|+|++|.++. +|.++.+
T Consensus 165 -l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~ 240 (305)
T d1xkua_ 165 -IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLAD 240 (305)
T ss_dssp -CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTT
T ss_pred -cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc-ccccccc
Confidence 3332 24677788888877777777777777888888888887777777777778888888888887765 4667777
Q ss_pred ccCCCeecCCCccCccccch-h------hhcCCCCCEEECcCCCCC
Q 042735 265 LLKLHYLDLSKYQFIQELPK-E------LGKLVQLSELELSHNFLG 303 (667)
Q Consensus 265 l~~L~~L~ls~n~~~~~~p~-~------l~~l~~L~~L~l~~n~l~ 303 (667)
+++|+.|++++|++.. ++. . ...+.+|+.|++++|++.
T Consensus 241 l~~L~~L~Ls~N~i~~-i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 241 HKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp CSSCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ccCCCEEECCCCccCc-cChhhccCcchhcccCCCCEEECCCCcCc
Confidence 7888888888777543 322 2 234567778888888763
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.92 E-value=4.7e-24 Score=223.67 Aligned_cols=279 Identities=28% Similarity=0.372 Sum_probs=225.2
Q ss_pred CCCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEE
Q 042735 1 NLTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLA 80 (667)
Q Consensus 1 ~L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~ 80 (667)
+|++|++|+|++|+|+++.| +.++++|++|++++|++.+.. .++++++|+.|++++|.+++..+. .....+..+.
T Consensus 64 ~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~~-~~~~~~~~~~ 138 (384)
T d2omza2 64 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPL-KNLTNLNRLE 138 (384)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGG-TTCTTCSEEE
T ss_pred cCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccccccc--cccccccccccccccccccccccc-cccccccccc
Confidence 37899999999999998643 889999999999999998643 389999999999999988653222 2222233333
Q ss_pred ccccccc-----------------------------------------ccCCccccCCCCccEEEeeCcccccccCccCC
Q 042735 81 LENNHFT-----------------------------------------GNLRHNICRNGALERVIVGGNHFRGPIPKCLR 119 (667)
Q Consensus 81 L~~n~l~-----------------------------------------~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~ 119 (667)
...|.+. .........+.+++.+++++|.+++..| +.
T Consensus 139 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~ 216 (384)
T d2omza2 139 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LG 216 (384)
T ss_dssp EEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GG
T ss_pred cccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc--cc
Confidence 3222211 1122345566789999999999987655 46
Q ss_pred CCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCee
Q 042735 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEF 199 (667)
Q Consensus 120 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 199 (667)
.+++|+.|++++|.++.. ..+..+++|+.|++++|.+.+.. .+..+++|+.|++++|.+++.. .+.+++.++.+
T Consensus 217 ~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l 290 (384)
T d2omza2 217 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNL 290 (384)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred ccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--ccccccccccc
Confidence 788999999999999753 46889999999999999997644 3788999999999999998654 37889999999
Q ss_pred eccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCc
Q 042735 200 DLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFI 279 (667)
Q Consensus 200 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~ 279 (667)
+++.|.+.+ ...+..+++++.|++++|++++.. .+..+++|+.|++++|++++. + .+.++++|+.|++++|++.
T Consensus 291 ~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~ 364 (384)
T d2omza2 291 ELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQIS 364 (384)
T ss_dssp ECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCC
T ss_pred ccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCC
Confidence 999999875 345888999999999999998643 388999999999999999874 4 6899999999999999987
Q ss_pred cccchhhhcCCCCCEEECcCC
Q 042735 280 QELPKELGKLVQLSELELSHN 300 (667)
Q Consensus 280 ~~~p~~l~~l~~L~~L~l~~n 300 (667)
+..| +..+++|++|++++|
T Consensus 365 ~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 365 DLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp BCGG--GTTCTTCSEEECCCE
T ss_pred CChh--hccCCCCCEeeCCCC
Confidence 6554 889999999999988
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4.7e-24 Score=214.08 Aligned_cols=254 Identities=19% Similarity=0.199 Sum_probs=175.9
Q ss_pred EEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcccccc
Q 042735 7 ELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHF 86 (667)
Q Consensus 7 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l 86 (667)
.++.+++.++. +|..+. .++++|+|++|+|+...+.+|.++++|++|++++|++....+..+..
T Consensus 15 ~v~c~~~~L~~-iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~------------- 78 (284)
T d1ozna_ 15 TTSCPQQGLQA-VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG------------- 78 (284)
T ss_dssp EEECCSSCCSS-CCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-------------
T ss_pred EEEcCCCCCCc-cCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccc-------------
Confidence 45666667764 455432 56778888888887666667777888888888877776554444433
Q ss_pred cccCCccccCCCCccEEEee-CcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCcc
Q 042735 87 TGNLRHNICRNGALERVIVG-GNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASN 165 (667)
Q Consensus 87 ~~~~~~~~~~~~~L~~L~l~-~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 165 (667)
...+..+... .|.++...|..+.++++|+.|++++|.+....+..+....+|+.+++++|.+.+..+..
T Consensus 79 ----------~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~ 148 (284)
T d1ozna_ 79 ----------LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148 (284)
T ss_dssp ----------CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ----------cccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhH
Confidence 2233333322 23344444666778888888888888887766777777888888888888887666677
Q ss_pred CCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCC
Q 042735 166 WGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLE 245 (667)
Q Consensus 166 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 245 (667)
|..+++|+.|++++|++.+..+..|.++++|+.+++++|++.+..|..|.++++|+.|++++|.+.+..+..|+.+++|+
T Consensus 149 f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~ 228 (284)
T d1ozna_ 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (284)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred hccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccC
Confidence 77888888888888888777777788888888888888888877788888888888888888888877777888888888
Q ss_pred eeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhh
Q 042735 246 FLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELG 287 (667)
Q Consensus 246 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~ 287 (667)
+|+|++|.+...-+.. .-...++.+....+++.-..|..+.
T Consensus 229 ~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~l~ 269 (284)
T d1ozna_ 229 YLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA 269 (284)
T ss_dssp EEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred EEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCchHHc
Confidence 8888888876543211 1112233444444555545565544
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.6e-24 Score=213.56 Aligned_cols=206 Identities=19% Similarity=0.144 Sum_probs=142.5
Q ss_pred CCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeecc-ccccceeCCCCCcc-cccCEEE
Q 042735 3 TNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLF-ENNLSGSIPPSVGN-LMLTVLA 80 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~-~n~l~~~~p~~~~~-~~L~~L~ 80 (667)
+++++|+|++|+|+++.+..|.++++|++|++++|++....+..+..++.++.++.. .|.++...|..+.. .+|++|+
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~ 111 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence 368999999999999888899999999999999999999888899999999998765 45566555666665 4577777
Q ss_pred cccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCC
Q 042735 81 LENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFG 160 (667)
Q Consensus 81 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 160 (667)
+++|.+....+..+....+|+.+++.+|++++..+..+..+++|+.|+|++|++++..+..|.++++|+.|++++|++.+
T Consensus 112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~ 191 (284)
T d1ozna_ 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (284)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence 77777765555555555666666666666665555555566666666666666665555556666666666666666655
Q ss_pred ccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccc
Q 042735 161 EIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVG 208 (667)
Q Consensus 161 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 208 (667)
..|..|..+++|++|++++|.+.+..+..|.++++|++|+|++|.+..
T Consensus 192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (284)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence 555556666666666666666655555555555556666665555543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6.2e-22 Score=196.32 Aligned_cols=198 Identities=24% Similarity=0.261 Sum_probs=160.1
Q ss_pred CCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEc
Q 042735 98 GALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177 (667)
Q Consensus 98 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 177 (667)
..+..++..+++++. +|..+. ++|++|+|++|+|++..+..|..+++|++|+|++|.+.. ++ .+..+++|++|+|
T Consensus 10 ~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L 84 (266)
T d1p9ag_ 10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL 84 (266)
T ss_dssp TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred CCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccc
Confidence 344455666666663 455443 478888888888887777788888888888888888864 33 3567888999999
Q ss_pred cCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCcc
Q 042735 178 SMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL 257 (667)
Q Consensus 178 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 257 (667)
++|+++. .+..+.++++|+.|++++|.+.+..+..+..+.+++.|++++|.+....+..+..+++|+.|++++|++++.
T Consensus 85 s~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~ 163 (266)
T d1p9ag_ 85 SHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (266)
T ss_dssp CSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred ccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence 9998875 456788888999999999888877777888889999999999988877777788889999999999999888
Q ss_pred chhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCC
Q 042735 258 IPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFL 302 (667)
Q Consensus 258 ~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l 302 (667)
.+..|..+++|+.|+|++|++. .+|..+..+.+|+.|+|++|++
T Consensus 164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence 8888888999999999998865 7888888889999999999976
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=7.8e-22 Score=195.57 Aligned_cols=200 Identities=20% Similarity=0.175 Sum_probs=134.5
Q ss_pred CCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEc
Q 042735 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLAL 81 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L 81 (667)
...+.+.+.+++.|+. +|..+. ++|++|+|++|+|++..+.+|.++++|++|+|++|+|+. +|.
T Consensus 9 ~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~~------------ 72 (266)
T d1p9ag_ 9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV------------ 72 (266)
T ss_dssp STTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC------------
T ss_pred cCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-ccc------------
Confidence 3456677888888876 465442 578888888888887666778888888888888887763 221
Q ss_pred ccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCc
Q 042735 82 ENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGE 161 (667)
Q Consensus 82 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 161 (667)
+..+++|++|+|++|+++. .+..+..+++|+.|++++|.+.+.
T Consensus 73 ------------------------------------~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~ 115 (266)
T d1p9ag_ 73 ------------------------------------DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115 (266)
T ss_dssp ------------------------------------CSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCC
T ss_pred ------------------------------------ccccccccccccccccccc-ccccccccccccccccccccccee
Confidence 1223444444444444432 233444555555555555555555
Q ss_pred cCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCC
Q 042735 162 IASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSL 241 (667)
Q Consensus 162 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 241 (667)
.+..+..+.+++.|++++|.+....+..+..++.|+.+++++|++.+..+..|..+++|+.|+|++|+++ .+|..+..+
T Consensus 116 ~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~ 194 (266)
T d1p9ag_ 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS 194 (266)
T ss_dssp CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred eccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCC
Confidence 5555666666677777777666655666667777777777777777766667777888888888888876 677777778
Q ss_pred CCCCeeeccCCcCC
Q 042735 242 TKLEFLNLSTNRFS 255 (667)
Q Consensus 242 ~~L~~L~Ls~N~l~ 255 (667)
++|+.|+|++|.+.
T Consensus 195 ~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 195 HLLPFAFLHGNPWL 208 (266)
T ss_dssp CCCSEEECCSCCBC
T ss_pred CCCCEEEecCCCCC
Confidence 88888888888765
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.75 E-value=1.7e-16 Score=163.05 Aligned_cols=274 Identities=23% Similarity=0.223 Sum_probs=173.1
Q ss_pred CCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEccc
Q 042735 4 NLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALEN 83 (667)
Q Consensus 4 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~ 83 (667)
+|+.|+|++|.++. +|.. +++|++|+|++|+|+ .+|+. +.+|+.|++++|+++ .++... ..|++|+|++
T Consensus 39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~lp--~~L~~L~L~~ 107 (353)
T d1jl5a_ 39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDLP--PLLEYLGVSN 107 (353)
T ss_dssp TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSCC--TTCCEEECCS
T ss_pred CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhhc--cccccccccc
Confidence 68899999999986 5653 578999999999998 67765 457899999999887 344321 3599999999
Q ss_pred ccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCc--
Q 042735 84 NHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGE-- 161 (667)
Q Consensus 84 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-- 161 (667)
|.+.. +|. +..+++|+.|++.++.+....+ ....+..+.+..+... ....+..++.++.|++++|.+...
T Consensus 108 n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~~ 179 (353)
T d1jl5a_ 108 NQLEK-LPE-LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPD 179 (353)
T ss_dssp SCCSS-CCC-CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCCC
T ss_pred ccccc-ccc-hhhhccceeecccccccccccc----ccccccchhhcccccc--ccccccccccceeccccccccccccc
Confidence 99874 443 5678899999999888764322 2334445555444332 122344455555555555543221
Q ss_pred ----------------cCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeec
Q 042735 162 ----------------IASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLIL 225 (667)
Q Consensus 162 ----------------~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 225 (667)
....+..++.|+.+++++|.... .+. ...++..+.+..+.+... +... ..+...++
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~-~~~~---~~l~~~~~ 251 (353)
T d1jl5a_ 180 LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PELP---QSLTFLDV 251 (353)
T ss_dssp CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CCCC---TTCCEEEC
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccc---cccccccccccccccccc-cccc---cccccccc
Confidence 11234556777777777776543 222 234455566665554321 1111 12222222
Q ss_pred cccccc----------------ccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcC
Q 042735 226 RGNQLI----------------GHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKL 289 (667)
Q Consensus 226 ~~n~l~----------------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l 289 (667)
..+.+. ..++.....+++|++|+|++|+++. +|.. +++|+.|++++|++. .+|.. +
T Consensus 252 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~L~-~l~~~---~ 323 (353)
T d1jl5a_ 252 SENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPEL---P 323 (353)
T ss_dssp CSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCCC---C
T ss_pred ccccccccccccchhcccccccCccccccccCCCCCEEECCCCccCc-cccc---cCCCCEEECCCCcCC-ccccc---c
Confidence 222111 1122223346799999999999985 4643 578999999999865 57753 5
Q ss_pred CCCCEEECcCCCCCCcCcccccCC
Q 042735 290 VQLSELELSHNFLGREIPSQICSM 313 (667)
Q Consensus 290 ~~L~~L~l~~n~l~~~ip~~~~~~ 313 (667)
.+|++|++++|++. .+|....++
T Consensus 324 ~~L~~L~L~~N~L~-~lp~~~~~L 346 (353)
T d1jl5a_ 324 QNLKQLHVEYNPLR-EFPDIPESV 346 (353)
T ss_dssp TTCCEEECCSSCCS-SCCCCCTTC
T ss_pred CCCCEEECcCCcCC-CCCcccccc
Confidence 68999999999974 677544333
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.3e-17 Score=162.25 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=43.5
Q ss_pred CcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCC
Q 042735 5 LRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIP 68 (667)
Q Consensus 5 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 68 (667)
.+.++.+++.++. +|..+. +++++|+|++|+|+...+.+|.++++|++|+|++|.+...+|
T Consensus 10 ~~~i~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~ 70 (242)
T d1xwdc1 10 NRVFLCQESKVTE-IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 70 (242)
T ss_dssp SSEEEEESCSCSS-CCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEEC
T ss_pred CCEEEEeCCCCCC-cCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceee
Confidence 3567777777774 454442 578888888888876555678888888888888887765443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=1.7e-17 Score=159.77 Aligned_cols=204 Identities=19% Similarity=0.226 Sum_probs=153.9
Q ss_pred EEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcccccc
Q 042735 7 ELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHF 86 (667)
Q Consensus 7 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l 86 (667)
.++++.+.+++.. .+..+.+|+.|++.+|.|+. + +.+.++++|++|++++|++++..| ......|+.+++++|.+
T Consensus 23 ~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~ 97 (227)
T d1h6ua2 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL 97 (227)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC
T ss_pred HHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc-ccccccccccccccccc
Confidence 3456667776653 33567888888888888874 3 357888888888888888875332 22335688888888877
Q ss_pred cccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccC
Q 042735 87 TGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNW 166 (667)
Q Consensus 87 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 166 (667)
+. + ..+.++.+|+.+.++++...+. ..+...+.++.+.++.+.+... ..+...++|+.|++++|.+... ..+
T Consensus 98 ~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l 169 (227)
T d1h6ua2 98 KN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPL 169 (227)
T ss_dssp SC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGG
T ss_pred cc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhh
Confidence 63 2 2467788888888888877654 3467788899999998888643 3477888999999999988543 347
Q ss_pred CCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeeccc
Q 042735 167 GKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRG 227 (667)
Q Consensus 167 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 227 (667)
.++++|+.|+|++|++++. + .++++++|++|+|++|++++. + .++++++|+.|++++
T Consensus 170 ~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 170 ANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN 226 (227)
T ss_dssp TTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred cccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence 8899999999999998763 3 388899999999999998864 3 388999999999864
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=2.7e-17 Score=158.34 Aligned_cols=186 Identities=21% Similarity=0.284 Sum_probs=117.5
Q ss_pred CCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEc
Q 042735 98 GALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNV 177 (667)
Q Consensus 98 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 177 (667)
.+|+.|++.+|+++.. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.. + +.+..+++|+.+.+
T Consensus 41 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l 114 (227)
T d1h6ua2 41 DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDL 114 (227)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEEC
T ss_pred CCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-cccccccccccccc
Confidence 3445555555555432 235666777777777777664432 6666777777777766542 2 34566777777777
Q ss_pred cCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCcc
Q 042735 178 SMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSL 257 (667)
Q Consensus 178 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 257 (667)
+++...+.. .+...+.++.+.++.+.+... ..+.++++|+.|++++|.+.+. ..++++++|+.|+|++|++++.
T Consensus 115 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l 188 (227)
T d1h6ua2 115 TSTQITDVT--PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI 188 (227)
T ss_dssp TTSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC
T ss_pred ccccccccc--hhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccCCC
Confidence 777665432 355566777777777665432 2356677777777777776532 2367777777777777777764
Q ss_pred chhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcC
Q 042735 258 IPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSH 299 (667)
Q Consensus 258 ~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~ 299 (667)
+ .+.++++|++|++++|++.+ ++ .++.+++|+.|++++
T Consensus 189 -~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 189 -S-PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN 226 (227)
T ss_dssp -G-GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred -h-hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence 3 36677777778887777554 33 266777788777763
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=4.7e-17 Score=158.27 Aligned_cols=217 Identities=20% Similarity=0.090 Sum_probs=108.0
Q ss_pred CEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcc-cccCEEEcccccccccCCccccCCCCccEEEeeCc
Q 042735 30 VKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGN-LMLTVLALENNHFTGNLRHNICRNGALERVIVGGN 108 (667)
Q Consensus 30 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 108 (667)
++++.+++.++ .+|+.+ .+++++|+|++|+|+...+..|.. .+|++|+|++|.+...++
T Consensus 11 ~~i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~----------------- 70 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE----------------- 70 (242)
T ss_dssp SEEEEESCSCS-SCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEEC-----------------
T ss_pred CEEEEeCCCCC-CcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceee-----------------
Confidence 45666666665 455444 245666666666665433333433 335555555554433221
Q ss_pred ccccccCccCCCCCCCcEEEcc-CCccccccchhhhcCCCCCEEECcCCccCCccCc-cCCCCCCCCEEEccCCcCCCCc
Q 042735 109 HFRGPIPKCLRNCPNLVRISLE-GNNMRGTISEAFGIYLNLTFLDISDNNFFGEIAS-NWGKCPKLSTLNVSMNNITRSI 186 (667)
Q Consensus 109 ~~~~~~p~~l~~l~~L~~L~L~-~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~ 186 (667)
+..+.+++++++|.+. .|++....+..|..+++|+.|++++|.+....+. .+..+..+..+...++.+....
T Consensus 71 ------~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~ 144 (242)
T d1xwdc1 71 ------ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 144 (242)
T ss_dssp ------SSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC
T ss_pred ------ccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccc
Confidence 2234445555555443 2344444444555555555555555554322111 1223334444444444544433
Q ss_pred CccccCCC-CcCeeeccCCcccccCCccccCCcccce-eecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhc
Q 042735 187 PLEIGNLS-TLNEFDLSLNHIVGKIPKEFGKLNSLTK-LILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGN 264 (667)
Q Consensus 187 p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 264 (667)
+..+.+++ .++.|++++|++....+..|. ..+++. +.+++|+++...+..|.++++|++|+|++|+++...+..+.+
T Consensus 145 ~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~ 223 (242)
T d1xwdc1 145 RNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 223 (242)
T ss_dssp TTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTT
T ss_pred ccccccccccceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcC
Confidence 44444443 555666666666544333333 333333 345556665444445666677777777777776554445555
Q ss_pred ccCCCeecC
Q 042735 265 LLKLHYLDL 273 (667)
Q Consensus 265 l~~L~~L~l 273 (667)
+.+|+.+++
T Consensus 224 l~~L~~l~~ 232 (242)
T d1xwdc1 224 LKKLRARST 232 (242)
T ss_dssp CCEEESSSE
T ss_pred CcccccCcC
Confidence 555555554
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.68 E-value=3.3e-17 Score=153.22 Aligned_cols=152 Identities=24% Similarity=0.230 Sum_probs=82.7
Q ss_pred CCCEEECcCCccCCcc-CccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeec
Q 042735 147 NLTFLDISDNNFFGEI-ASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLIL 225 (667)
Q Consensus 147 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 225 (667)
++++|+|++|+|.+.+ +..|..+++|+.|+|++|.+....+..+..+++|++|+|++|++....+..|.++++|++|+|
T Consensus 30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L 109 (192)
T d1w8aa_ 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence 4555555555554322 334455555555555555555555555555666666666666665555555666666666666
Q ss_pred ccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhhcCCCCCEEECcCCCC
Q 042735 226 RGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELGKLVQLSELELSHNFL 302 (667)
Q Consensus 226 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l~~n~l 302 (667)
++|+|++..+..|..+++|++|+|++|.+.......+ -...++.+.+..+.+....|.. +..++.++++.|.+
T Consensus 110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l 182 (192)
T d1w8aa_ 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEF 182 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTC
T ss_pred CCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhC
Confidence 6666665555566666666666666666654322111 1122344455555555455543 33445556666655
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.68 E-value=6e-17 Score=151.43 Aligned_cols=171 Identities=21% Similarity=0.240 Sum_probs=113.7
Q ss_pred cEEEeeCcccccccCccCCCCCCCcEEEccCCcccc-ccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccC
Q 042735 101 ERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRG-TISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179 (667)
Q Consensus 101 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 179 (667)
+.++.++++++ .+|..+. +++++|+|++|+|++ ..+..|..+++|+.|+|++|.+....+..|..+++|+.|+|++
T Consensus 11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~ 87 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence 45667777776 3455443 567777888777765 3356677777788888877777777777777777778888887
Q ss_pred CcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccch
Q 042735 180 NNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIP 259 (667)
Q Consensus 180 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 259 (667)
|+++...|..|.++++|++|+|++|++.+..+..|.++++|++|+|++|.+....... .-...++.+.+..|.++...|
T Consensus 88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p 166 (192)
T d1w8aa_ 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSS
T ss_pred ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCC
Confidence 7777766777777777888888877777777777777777777877777765332211 111234455566666665555
Q ss_pred hhhhcccCCCeecCCCccC
Q 042735 260 ESLGNLLKLHYLDLSKYQF 278 (667)
Q Consensus 260 ~~~~~l~~L~~L~ls~n~~ 278 (667)
..+ ..++.++++.|.+
T Consensus 167 ~~l---~~~~l~~L~~n~l 182 (192)
T d1w8aa_ 167 SKV---RDVQIKDLPHSEF 182 (192)
T ss_dssp TTT---TTSBGGGSCTTTC
T ss_pred hhh---cCCEeeecCHhhC
Confidence 443 3445566666654
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=3.2e-16 Score=147.34 Aligned_cols=162 Identities=25% Similarity=0.364 Sum_probs=101.5
Q ss_pred CCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCee
Q 042735 120 NCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEF 199 (667)
Q Consensus 120 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 199 (667)
.+++|+.|++++|.++.. +.+..+++|++|++++|++.+..+ +..+++|++|++++|.+... + .+.+++.|+.|
T Consensus 38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L 111 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGL 111 (199)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEE
T ss_pred HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-ccccccccccc
Confidence 455666677766666532 235666777777777776654332 66677777777777766532 2 36667777777
Q ss_pred eccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCc
Q 042735 200 DLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFI 279 (667)
Q Consensus 200 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~ 279 (667)
++++|..... ..+..+++|+.|++++|++.. + +.+..+++|+.|++++|++++.. .++++++|+.|++++|++.
T Consensus 112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~ 185 (199)
T d2omxa2 112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVS 185 (199)
T ss_dssp ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred cccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCC
Confidence 7776665432 346667777777777776642 2 24666777777777777776542 3666777777777777654
Q ss_pred cccchhhhcCCCCCEE
Q 042735 280 QELPKELGKLVQLSEL 295 (667)
Q Consensus 280 ~~~p~~l~~l~~L~~L 295 (667)
. ++ .++.+++|++|
T Consensus 186 ~-i~-~l~~L~~L~~L 199 (199)
T d2omxa2 186 D-IS-VLAKLTNLESL 199 (199)
T ss_dssp C-CG-GGGGCTTCSEE
T ss_pred C-Cc-cccCCCCCCcC
Confidence 3 33 35666666654
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=2.5e-16 Score=149.42 Aligned_cols=164 Identities=25% Similarity=0.314 Sum_probs=92.5
Q ss_pred CCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeee
Q 042735 121 CPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFD 200 (667)
Q Consensus 121 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 200 (667)
+.+|+.|++++|.++... .+..+++|++|++++|++.+.. .+..+++|+.|++++|++++ +| .+.++++|+.|+
T Consensus 45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~ 118 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (210)
T ss_dssp HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccc
Confidence 345555555555554322 2455556666666666554422 24555666666666666553 22 355566666666
Q ss_pred ccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCcc
Q 042735 201 LSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQ 280 (667)
Q Consensus 201 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~ 280 (667)
+++|.+.. ...+.++++|+.+++++|.+++ +..+..+++|+.+++++|++++.. .+.++++|+.|++++|++.
T Consensus 119 l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~- 191 (210)
T d1h6ta2 119 LEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS- 191 (210)
T ss_dssp CTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-
T ss_pred cccccccc--cccccccccccccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCCCC-
Confidence 66665532 2345566666666666666543 234555666666666666666532 2556666666666666643
Q ss_pred ccchhhhcCCCCCEEECc
Q 042735 281 ELPKELGKLVQLSELELS 298 (667)
Q Consensus 281 ~~p~~l~~l~~L~~L~l~ 298 (667)
.+| .+..+++|++|+++
T Consensus 192 ~l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 192 DLR-ALAGLKNLDVLELF 208 (210)
T ss_dssp BCG-GGTTCTTCSEEEEE
T ss_pred CCh-hhcCCCCCCEEEcc
Confidence 344 36666677777665
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=3.5e-16 Score=148.34 Aligned_cols=180 Identities=20% Similarity=0.256 Sum_probs=134.9
Q ss_pred eccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEcccccccc
Q 042735 9 HLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTG 88 (667)
Q Consensus 9 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~ 88 (667)
+++.+.+++.++. ..+.+|+.|++++|.+... + .+..+++|++|+|++|++++ +++.-...+|+.|++++|.+++
T Consensus 30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~~~~~l~~L~~L~l~~n~i~~ 104 (210)
T d1h6ta2 30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKPLANLKNLGWLFLDENKVKD 104 (210)
T ss_dssp HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCC
T ss_pred HhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC-ccccccCccccccccccccccc
Confidence 4555666654443 3467788888888887743 2 36778888888888888775 3332222468888888888764
Q ss_pred cCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCC
Q 042735 89 NLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGK 168 (667)
Q Consensus 89 ~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 168 (667)
. + .+..+++|+.|++.+|.+.. ...+..+++|+.++++.|.+++. ..+..+++|+++++++|++.+. + .+.+
T Consensus 105 l-~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~ 176 (210)
T d1h6ta2 105 L-S-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAG 176 (210)
T ss_dssp G-G-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTT
T ss_pred c-c-cccccccccccccccccccc--ccccccccccccccccccccccc--cccccccccccccccccccccc-c-cccC
Confidence 3 3 47778888888888887764 24578899999999999998753 4577899999999999998753 3 3889
Q ss_pred CCCCCEEEccCCcCCCCcCccccCCCCcCeeeccC
Q 042735 169 CPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSL 203 (667)
Q Consensus 169 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 203 (667)
+++|+.|+|++|.++. +| .+.++++|++|+|++
T Consensus 177 l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 177 LTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred CCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence 9999999999999975 44 589999999999874
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=6.8e-16 Score=145.02 Aligned_cols=159 Identities=24% Similarity=0.306 Sum_probs=107.0
Q ss_pred CccEEEeeCcccccccCccCCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEcc
Q 042735 99 ALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVS 178 (667)
Q Consensus 99 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 178 (667)
+++.|++++|.+... ..+..+++|++|+|++|++++..+ ++.+++|++|++++|.+.. ++ .+..+++|+.|+++
T Consensus 41 ~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~ 114 (199)
T d2omxa2 41 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLF 114 (199)
T ss_dssp TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECC
T ss_pred CCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-cccccccccccccc
Confidence 344444444444321 235567777777777777765433 6777777777777776643 22 36777788888888
Q ss_pred CCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccc
Q 042735 179 MNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLI 258 (667)
Q Consensus 179 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 258 (667)
+|.+... ..+.++++|+.|++++|.+.. .+.+..+++|+.|++++|++++. + .++++++|++|++++|++++.
T Consensus 115 ~~~~~~~--~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~i- 187 (199)
T d2omxa2 115 NNQITDI--DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSDI- 187 (199)
T ss_dssp SSCCCCC--GGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-
T ss_pred ccccccc--cccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCCC-
Confidence 7777543 246777888888888887753 23577788888888888887643 2 477888888888888888763
Q ss_pred hhhhhcccCCCee
Q 042735 259 PESLGNLLKLHYL 271 (667)
Q Consensus 259 p~~~~~l~~L~~L 271 (667)
+ .+.++++|+.|
T Consensus 188 ~-~l~~L~~L~~L 199 (199)
T d2omxa2 188 S-VLAKLTNLESL 199 (199)
T ss_dssp G-GGGGCTTCSEE
T ss_pred c-cccCCCCCCcC
Confidence 3 46777777764
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.1e-18 Score=184.10 Aligned_cols=302 Identities=19% Similarity=0.168 Sum_probs=194.2
Q ss_pred CCCcEEeccCCcCcCCC-CccccCCCCCCEEEccCccccc----cCCccccCCCCCCeeeccccccce----eCCCCCcc
Q 042735 3 TNLRELHLRDNYLTGLI-PTETWNLKSLVKLGLGGNQFRG----SLPSSVGNLSSLRYLFLFENNLSG----SIPPSVGN 73 (667)
Q Consensus 3 ~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~ 73 (667)
++|+.||+++|++++.. ...+..+++|++|+|++|+|+. .+...+..+++|++|||++|.|+. .+...+..
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 36889999999997531 2334567889999999998873 334566788899999999998853 12223322
Q ss_pred --cccCEEEccccccccc----CCccccCCCCccEEEeeCcccccccC--------------------------------
Q 042735 74 --LMLTVLALENNHFTGN----LRHNICRNGALERVIVGGNHFRGPIP-------------------------------- 115 (667)
Q Consensus 74 --~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~p-------------------------------- 115 (667)
..|++|+|++|.++.. ++..+..+++|+.|++++|.++....
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence 3589999999988653 34456677889999998887653100
Q ss_pred -ccCCCCCCCcEEEccCCccc-----------------------------cc----cchhhhcCCCCCEEECcCCccCC-
Q 042735 116 -KCLRNCPNLVRISLEGNNMR-----------------------------GT----ISEAFGIYLNLTFLDISDNNFFG- 160 (667)
Q Consensus 116 -~~l~~l~~L~~L~L~~n~~~-----------------------------~~----~~~~~~~l~~L~~L~L~~n~l~~- 160 (667)
..+...+.++.++++.+.+. .. ....+.....++.+++++|.+..
T Consensus 162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~ 241 (460)
T d1z7xw1 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241 (460)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence 00112344555555544322 10 11223456788899998887532
Q ss_pred ----ccCccCCCCCCCCEEEccCCcCCCCc----CccccCCCCcCeeeccCCcccccCCcc-----ccCCcccceeeccc
Q 042735 161 ----EIASNWGKCPKLSTLNVSMNNITRSI----PLEIGNLSTLNEFDLSLNHIVGKIPKE-----FGKLNSLTKLILRG 227 (667)
Q Consensus 161 ----~~~~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~~p~~-----~~~l~~L~~L~L~~ 227 (667)
...........++.|++++|.+.... ...+...+.++.+++++|.+.+..... ......|+.+++++
T Consensus 242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~ 321 (460)
T d1z7xw1 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 321 (460)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 22334456778899999998875432 123455678888888888775321111 12345788888888
Q ss_pred ccccccCcc----cccCCCCCCeeeccCCcCCcc----chhhhh-cccCCCeecCCCccCcc----ccchhhhcCCCCCE
Q 042735 228 NQLIGHLPS----EIGSLTKLEFLNLSTNRFSSL----IPESLG-NLLKLHYLDLSKYQFIQ----ELPKELGKLVQLSE 294 (667)
Q Consensus 228 n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~ls~n~~~~----~~p~~l~~l~~L~~ 294 (667)
|.+...... .+...++|++|+|++|.++.. ++..+. ..+.|+.|+|++|++.. .+...+..+++|++
T Consensus 322 ~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 401 (460)
T d1z7xw1 322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 401 (460)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred cchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCE
Confidence 877644322 334556888888888888643 233333 34568888888888753 24555667788888
Q ss_pred EECcCCCCCC
Q 042735 295 LELSHNFLGR 304 (667)
Q Consensus 295 L~l~~n~l~~ 304 (667)
|++++|+++.
T Consensus 402 L~Ls~N~i~~ 411 (460)
T d1z7xw1 402 LDLSNNCLGD 411 (460)
T ss_dssp EECCSSSCCH
T ss_pred EECCCCcCCH
Confidence 8888888764
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.64 E-value=7.7e-15 Score=150.37 Aligned_cols=262 Identities=25% Similarity=0.281 Sum_probs=169.3
Q ss_pred CCCCcEEeccCCcCcCCCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEc
Q 042735 2 LTNLRELHLRDNYLTGLIPTETWNLKSLVKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLAL 81 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L 81 (667)
+++|++|+|++|+|+. +|.. +.+|+.|++++|+++. ++. + .+.|++|++++|.+. .+|.......|+.|++
T Consensus 57 ~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L~~n~l~-~lp~~~~l~~L~~L~l 127 (353)
T d1jl5a_ 57 PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGVSNNQLE-KLPELQNSSFLKIIDV 127 (353)
T ss_dssp CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS-C--CTTCCEEECCSSCCS-SCCCCTTCTTCCEEEC
T ss_pred CCCCCEEECCCCCCcc-cccc---hhhhhhhhhhhcccch-hhh-h--ccccccccccccccc-cccchhhhccceeecc
Confidence 4689999999999985 4654 5689999999999873 442 1 246999999999997 5665433367999999
Q ss_pred ccccccccCCccccCCCCccEEEeeCcccccccCccCCCCCCCcEEEccCCcccccc------------------chhhh
Q 042735 82 ENNHFTGNLRHNICRNGALERVIVGGNHFRGPIPKCLRNCPNLVRISLEGNNMRGTI------------------SEAFG 143 (667)
Q Consensus 82 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~------------------~~~~~ 143 (667)
++|.+..... ....+..+.+..+... .+..+..++.++.|++..|.+.... ...+.
T Consensus 128 ~~~~~~~~~~----~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 201 (353)
T d1jl5a_ 128 DNNSLKKLPD----LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQ 201 (353)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCT
T ss_pred cccccccccc----ccccccchhhcccccc--ccccccccccceeccccccccccccccccccccccccccccccccccc
Confidence 9998764322 1234445554444332 2334555666666666665543211 12345
Q ss_pred cCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccc---------------
Q 042735 144 IYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVG--------------- 208 (667)
Q Consensus 144 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--------------- 208 (667)
.++.|+.+++++|.... .+. ...++..+.+..+.+.... ... ..+...++..+.+.+
T Consensus 202 ~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~~-~~~---~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~ 273 (353)
T d1jl5a_ 202 NLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLP-ELP---QSLTFLDVSENIFSGLSELPPNLYYLNASS 273 (353)
T ss_dssp TCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCC-CCC---TTCCEEECCSSCCSEESCCCTTCCEEECCS
T ss_pred ccccccccccccccccc-ccc---ccccccccccccccccccc-ccc---ccccccccccccccccccccchhccccccc
Confidence 67889999999887643 332 3456777888887765422 111 122222222221111
Q ss_pred -cCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccchhhh
Q 042735 209 -KIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELPKELG 287 (667)
Q Consensus 209 -~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p~~l~ 287 (667)
.++.....+++|++|+|++|++. .+|. .+++|+.|+|++|+++. +|.. +.+|+.|++++|++ ..+|..
T Consensus 274 ~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~~-l~~~---~~~L~~L~L~~N~L-~~lp~~-- 342 (353)
T d1jl5a_ 274 NEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAE-VPEL---PQNLKQLHVEYNPL-REFPDI-- 342 (353)
T ss_dssp SCCSEECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC-SSCCCC--
T ss_pred CccccccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCCc-cccc---cCCCCEEECcCCcC-CCCCcc--
Confidence 11222344689999999999987 5664 46799999999999985 4543 46899999999985 467753
Q ss_pred cCCCCCEEECc
Q 042735 288 KLVQLSELELS 298 (667)
Q Consensus 288 ~l~~L~~L~l~ 298 (667)
...|+.|.+.
T Consensus 343 -~~~L~~L~~~ 352 (353)
T d1jl5a_ 343 -PESVEDLRMN 352 (353)
T ss_dssp -CTTCCEEECC
T ss_pred -ccccCeeECc
Confidence 2356766653
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.62 E-value=1.8e-16 Score=148.02 Aligned_cols=151 Identities=18% Similarity=0.153 Sum_probs=99.5
Q ss_pred CcceeecccCeEEEEEEeCCCceEEEEecCCCCCC--------------chHHhHHHHHHHHHHHHhcCCCCeeEEEEEE
Q 042735 425 AKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPS--------------DQIADQKEFFAEIEALTKIRHRNIVKFYGFC 490 (667)
Q Consensus 425 ~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~--------------~~~~~~~~~~~E~~~l~~l~H~niv~~~g~~ 490 (667)
..+.||+|+||+||+|...+|+.||||+++..... ........+.+|...+.++.|++++..+++.
T Consensus 4 vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~ 83 (191)
T d1zara2 4 IGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE 83 (191)
T ss_dssp EEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE
T ss_pred hCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec
Confidence 46789999999999999888999999976532110 0111223456789999999999999988763
Q ss_pred EeCCceEEEEEecCCCChHHHhcc-----------------ccCCcccccccCCeeecCCCceEEecccccccccCCCCC
Q 042735 491 SHARHSILIYEYLKRGSLATNLSN-----------------DAAAEELDISSKNVLLDLEHKAHVSDFGIAKFLKPDSSN 553 (667)
Q Consensus 491 ~~~~~~~lv~ey~~~g~L~~~l~~-----------------~~~~~~~dlk~~NiLld~~~~~kl~DFGla~~~~~~~~~ 553 (667)
..+++|||++++.+.+.-.. .....|.||||+|||++++ .++|+|||.|+........
T Consensus 84 ----~~~lvme~~~~~~~~~l~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~-~~~liDFG~a~~~~~~~~~ 158 (191)
T d1zara2 84 ----GNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEE-GIWIIDFPQSVEVGEEGWR 158 (191)
T ss_dssp ----TTEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEETT-EEEECCCTTCEETTSTTHH
T ss_pred ----CCEEEEEeeccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeCC-CEEEEECCCcccCCCCCcH
Confidence 23789999998766432111 0122355999999999965 5899999999765432211
Q ss_pred c--c-cccccccccCCCCCCCchHHHHHHH
Q 042735 554 W--S-ALVGTYRYVAPDYRKKCDVYSFRVL 580 (667)
Q Consensus 554 ~--~-~~~Gt~~y~aPE~~~~~DV~sfGvv 580 (667)
. . .......|..=.|..++||||..--
T Consensus 159 ~~l~rd~~~~~~~f~r~y~~~~d~~s~~~~ 188 (191)
T d1zara2 159 EILERDVRNIITYFSRTYRTEKDINSAIDR 188 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 0 0 0000011222236788999996543
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.8e-16 Score=168.89 Aligned_cols=308 Identities=17% Similarity=0.120 Sum_probs=202.4
Q ss_pred CCCCcEEeccCCcCcC----CCCccccCCCCCCEEEccCcccccc----CCccccC-CCCCCeeecccccccee----CC
Q 042735 2 LTNLRELHLRDNYLTG----LIPTETWNLKSLVKLGLGGNQFRGS----LPSSVGN-LSSLRYLFLFENNLSGS----IP 68 (667)
Q Consensus 2 L~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~-l~~L~~L~L~~n~l~~~----~p 68 (667)
+++++.|+|++|.|+. .++..+..+++|+.|||++|+|+.. +...+.. ..+|++|+|++|++++. ++
T Consensus 26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~ 105 (460)
T d1z7xw1 26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 105 (460)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccccc
Confidence 4678899999998863 2344567788899999999988632 2223322 34799999999888642 33
Q ss_pred CCCcc-cccCEEEcccccccccCCc---------------------------------cccCCCCccEEEeeCcccccc-
Q 042735 69 PSVGN-LMLTVLALENNHFTGNLRH---------------------------------NICRNGALERVIVGGNHFRGP- 113 (667)
Q Consensus 69 ~~~~~-~~L~~L~L~~n~l~~~~~~---------------------------------~~~~~~~L~~L~l~~n~~~~~- 113 (667)
..+.. .+|+.|+|++|.++..... .+.....++.++++.+.....
T Consensus 106 ~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~ 185 (460)
T d1z7xw1 106 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 185 (460)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred chhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccccc
Confidence 33433 5688999988876431000 011123455555544332210
Q ss_pred --------------------------------cCccCCCCCCCcEEEccCCccccc-----cchhhhcCCCCCEEECcCC
Q 042735 114 --------------------------------IPKCLRNCPNLVRISLEGNNMRGT-----ISEAFGIYLNLTFLDISDN 156 (667)
Q Consensus 114 --------------------------------~p~~l~~l~~L~~L~L~~n~~~~~-----~~~~~~~l~~L~~L~L~~n 156 (667)
....+...+.++.+++..|.+... ....+.....++.|++++|
T Consensus 186 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n 265 (460)
T d1z7xw1 186 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 265 (460)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred ccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccc
Confidence 001233468899999999986432 2334456778999999999
Q ss_pred ccCCcc----CccCCCCCCCCEEEccCCcCCCCcCcc-----ccCCCCcCeeeccCCcccccCCcc----ccCCccccee
Q 042735 157 NFFGEI----ASNWGKCPKLSTLNVSMNNITRSIPLE-----IGNLSTLNEFDLSLNHIVGKIPKE----FGKLNSLTKL 223 (667)
Q Consensus 157 ~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~p~~-----~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L 223 (667)
.+.... ...+...+.++.+++++|.+....... ......|+.+++++|.+....... +...++|+.|
T Consensus 266 ~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L 345 (460)
T d1z7xw1 266 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 345 (460)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred cccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhh
Confidence 875432 233456789999999999885321111 123468999999999886543322 3455689999
Q ss_pred eccccccccc----Cccccc-CCCCCCeeeccCCcCCcc----chhhhhcccCCCeecCCCccCccccchhh----h-cC
Q 042735 224 ILRGNQLIGH----LPSEIG-SLTKLEFLNLSTNRFSSL----IPESLGNLLKLHYLDLSKYQFIQELPKEL----G-KL 289 (667)
Q Consensus 224 ~L~~n~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~n~~~~~~p~~l----~-~l 289 (667)
+|++|.+... +...+. ..+.|++|+|++|.++.. +...+..+++|++|++++|++.......+ . ..
T Consensus 346 ~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~ 425 (460)
T d1z7xw1 346 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425 (460)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTT
T ss_pred heeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCC
Confidence 9999998642 333343 467899999999999753 34556778999999999999765433333 2 33
Q ss_pred CCCCEEECcCCCCCCcCccc
Q 042735 290 VQLSELELSHNFLGREIPSQ 309 (667)
Q Consensus 290 ~~L~~L~l~~n~l~~~ip~~ 309 (667)
..|+.|++.+|.+..+....
T Consensus 426 ~~L~~l~l~~~~~~~~~~~~ 445 (460)
T d1z7xw1 426 CLLEQLVLYDIYWSEEMEDR 445 (460)
T ss_dssp CCCCEEECTTCCCCHHHHHH
T ss_pred CccCEEECCCCCCCHHHHHH
Confidence 47999999999987655443
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=3.1e-15 Score=148.75 Aligned_cols=61 Identities=23% Similarity=0.174 Sum_probs=30.9
Q ss_pred CCcccceeeccccc-ccccCcccccCCCCCCeeeccCC-cCCccchhhhhcccCCCeecCCCc
Q 042735 216 KLNSLTKLILRGNQ-LIGHLPSEIGSLTKLEFLNLSTN-RFSSLIPESLGNLLKLHYLDLSKY 276 (667)
Q Consensus 216 ~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~ls~n 276 (667)
++++|+.|++++|. +++.....+..+++|++|+|+++ .+++.....++++++|+.|+++++
T Consensus 173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 34555555555432 33334444555555555655552 344433444555556666666554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=5e-15 Score=147.21 Aligned_cols=222 Identities=18% Similarity=0.224 Sum_probs=101.5
Q ss_pred CEEEccCccccccCCccccCCCCCCeeeccccccceeCCCCCcccccCEEEccccccccc-CCccccCCCCccEEEeeCc
Q 042735 30 VKLGLGGNQFRGSLPSSVGNLSSLRYLFLFENNLSGSIPPSVGNLMLTVLALENNHFTGN-LRHNICRNGALERVIVGGN 108 (667)
Q Consensus 30 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~l~~n 108 (667)
+.|||+++.+.......+.. ..+..+.++...+.......+....|+.|+|++|.++.. +...+..+++|+.|++.++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~ 81 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence 36777777664222221111 124455555554433333333334567777776665433 2223444555666666655
Q ss_pred ccccccCccCCCCCCCcEEEccCC-ccccc-cchhhhcCCCCCEEECcCCc-cCCc-cCccCC-CCCCCCEEEccCCc--
Q 042735 109 HFRGPIPKCLRNCPNLVRISLEGN-NMRGT-ISEAFGIYLNLTFLDISDNN-FFGE-IASNWG-KCPKLSTLNVSMNN-- 181 (667)
Q Consensus 109 ~~~~~~p~~l~~l~~L~~L~L~~n-~~~~~-~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~-~l~~L~~L~L~~n~-- 181 (667)
.+++..+..+..+++|++|+|++| .++.. +......+++|++|++++|. +... +...+. .+++|+.|+++++.
T Consensus 82 ~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 161 (284)
T d2astb2 82 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 161 (284)
T ss_dssp BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred CCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccc
Confidence 555544555555556666666553 33311 11122345555555555542 2111 111111 23455555555432
Q ss_pred CCCC-cCccccCCCCcCeeeccCC-cccccCCccccCCcccceeecccc-cccccCcccccCCCCCCeeeccCC
Q 042735 182 ITRS-IPLEIGNLSTLNEFDLSLN-HIVGKIPKEFGKLNSLTKLILRGN-QLIGHLPSEIGSLTKLEFLNLSTN 252 (667)
Q Consensus 182 l~~~-~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N 252 (667)
++.. +.....++++|++|++++| .+++.....+..+++|++|++++| .+++.....++.+++|+.|+++++
T Consensus 162 i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 162 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 2111 1111234455555555543 234344444555555555555553 333333334455555555555544
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.9e-14 Score=128.51 Aligned_cols=129 Identities=21% Similarity=0.175 Sum_probs=68.2
Q ss_pred CCCCCCCcEEEccCCccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcC
Q 042735 118 LRNCPNLVRISLEGNNMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLN 197 (667)
Q Consensus 118 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 197 (667)
+.++.+|++|+|++|+|+.. +..+..+++|++|+|++|.+.. + +.+..+++|++|++++|+++...+..+..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence 44566677777777777643 4445566666666666666643 2 2355555555555555555543333334455555
Q ss_pred eeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccc---hhhhhcccCCCeec
Q 042735 198 EFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLI---PESLGNLLKLHYLD 272 (667)
Q Consensus 198 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~ 272 (667)
+|++++|.+... ++ ...+..+++|++|++++|.++... +..+..+++|+.||
T Consensus 91 ~L~L~~N~i~~~-~~----------------------l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 91 ELILTNNSLVEL-GD----------------------LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EEECCSCCCCCG-GG----------------------GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred cceecccccccc-cc----------------------ccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 555555544321 10 123445555555555555554321 22355556666665
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=6.8e-14 Score=126.02 Aligned_cols=128 Identities=21% Similarity=0.206 Sum_probs=97.4
Q ss_pred CCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCC
Q 042735 166 WGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLE 245 (667)
Q Consensus 166 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 245 (667)
|.++.+|+.|+|++|+|+. ++..+..+++|+.|+|++|.+... +.|..+++|+.|++++|+++...+..+..+++|+
T Consensus 14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence 4456677777777777764 355556778888888888887753 3478888899999999988866666667899999
Q ss_pred eeeccCCcCCccch-hhhhcccCCCeecCCCccCccccc----hhhhcCCCCCEEEC
Q 042735 246 FLNLSTNRFSSLIP-ESLGNLLKLHYLDLSKYQFIQELP----KELGKLVQLSELEL 297 (667)
Q Consensus 246 ~L~Ls~N~l~~~~p-~~~~~l~~L~~L~ls~n~~~~~~p----~~l~~l~~L~~L~l 297 (667)
.|++++|+++.... ..+..+++|+.|++++|.+.. .| ..+..+++|++||.
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETT
T ss_pred cceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeCC
Confidence 99999999976422 467888999999999998644 33 35778899998874
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.42 E-value=1.6e-14 Score=147.83 Aligned_cols=137 Identities=19% Similarity=0.195 Sum_probs=89.2
Q ss_pred CCCCCCEEEccCCcCCCC----cCccccCCCCcCeeeccCCccccc-----CCccccCCcccceeeccccccccc----C
Q 042735 168 KCPKLSTLNVSMNNITRS----IPLEIGNLSTLNEFDLSLNHIVGK-----IPKEFGKLNSLTKLILRGNQLIGH----L 234 (667)
Q Consensus 168 ~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~-----~p~~~~~l~~L~~L~L~~n~l~~~----~ 234 (667)
..+.|+.|.+++|.+... +...+...++|+.|+|++|.+... +...+..+++|+.|+|++|.+... +
T Consensus 156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L 235 (344)
T d2ca6a1 156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 235 (344)
T ss_dssp TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence 345677777777765421 222344566777778777776431 233466677888888888876532 3
Q ss_pred cccccCCCCCCeeeccCCcCCccchhh----hhc--ccCCCeecCCCccCccc----cchhhh-cCCCCCEEECcCCCCC
Q 042735 235 PSEIGSLTKLEFLNLSTNRFSSLIPES----LGN--LLKLHYLDLSKYQFIQE----LPKELG-KLVQLSELELSHNFLG 303 (667)
Q Consensus 235 p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~--l~~L~~L~ls~n~~~~~----~p~~l~-~l~~L~~L~l~~n~l~ 303 (667)
...+...++|++|+|++|.+++..... +.. ...|+.|++++|++... +...+. +.++|+.|++++|.+.
T Consensus 236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 445667888889999988887542222 222 35688999998886543 333342 5678999999999885
Q ss_pred C
Q 042735 304 R 304 (667)
Q Consensus 304 ~ 304 (667)
.
T Consensus 316 ~ 316 (344)
T d2ca6a1 316 E 316 (344)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.41 E-value=6.9e-13 Score=113.44 Aligned_cols=86 Identities=24% Similarity=0.333 Sum_probs=36.0
Q ss_pred ccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccc-hhhhhcccCC
Q 042735 190 IGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLI-PESLGNLLKL 268 (667)
Q Consensus 190 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L 268 (667)
+.++++|++|++++|.+. .+|+.|+.+++|+.|++++|.+++ +| .++.+++|+.|++++|+++... ...+..+++|
T Consensus 16 l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L 92 (124)
T d1dcea3 16 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 92 (124)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred cccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCC
Confidence 344444444444444443 233334444444444444444432 22 2444444444444444444321 1233444444
Q ss_pred CeecCCCccC
Q 042735 269 HYLDLSKYQF 278 (667)
Q Consensus 269 ~~L~ls~n~~ 278 (667)
+.|++++|++
T Consensus 93 ~~L~l~~N~i 102 (124)
T d1dcea3 93 VLLNLQGNSL 102 (124)
T ss_dssp CEEECTTSGG
T ss_pred CEEECCCCcC
Confidence 4444444443
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.41 E-value=1.5e-14 Score=148.05 Aligned_cols=245 Identities=16% Similarity=0.146 Sum_probs=136.5
Q ss_pred CccccCCCCCCEEEccCcccccc----CCccccCCCCCCeeecccccccee---CCCCCcccccCEEEcccccccccCCc
Q 042735 20 PTETWNLKSLVKLGLGGNQFRGS----LPSSVGNLSSLRYLFLFENNLSGS---IPPSVGNLMLTVLALENNHFTGNLRH 92 (667)
Q Consensus 20 p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~---~p~~~~~~~L~~L~L~~n~l~~~~~~ 92 (667)
...+.+...|+.|+|++|.|... +...+...++|+.|+++++..... .|..+. .+..
T Consensus 24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~----------------~l~~ 87 (344)
T d2ca6a1 24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR----------------LLLQ 87 (344)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH----------------HHHH
T ss_pred HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHH----------------HHHH
Confidence 34455677888888888887532 233456677888888877654211 111000 0011
Q ss_pred cccCCCCccEEEeeCcccccc----cCccCCCCCCCcEEEccCCccccccch-------------hhhcCCCCCEEECcC
Q 042735 93 NICRNGALERVIVGGNHFRGP----IPKCLRNCPNLVRISLEGNNMRGTISE-------------AFGIYLNLTFLDISD 155 (667)
Q Consensus 93 ~~~~~~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~L~~n~~~~~~~~-------------~~~~l~~L~~L~L~~ 155 (667)
.+...++|+.|++++|.++.. +...+...++|++|++++|.++..... .....+.|+.|++++
T Consensus 88 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~ 167 (344)
T d2ca6a1 88 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 167 (344)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccc
Confidence 122233444444444444322 222334456666666666655321110 113455677777777
Q ss_pred CccCCc----cCccCCCCCCCCEEEccCCcCCCC-----cCccccCCCCcCeeeccCCccccc----CCccccCCcccce
Q 042735 156 NNFFGE----IASNWGKCPKLSTLNVSMNNITRS-----IPLEIGNLSTLNEFDLSLNHIVGK----IPKEFGKLNSLTK 222 (667)
Q Consensus 156 n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~-----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~ 222 (667)
|.+... +...+..+++|+.|+|++|.+... +...+..+++|+.|+|++|.+... +...+..+++|+.
T Consensus 168 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~ 247 (344)
T d2ca6a1 168 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247 (344)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred ccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchh
Confidence 665422 222344566777777777776531 223355667777888877776432 2344566777888
Q ss_pred eecccccccccCc----cccc--CCCCCCeeeccCCcCCcc----chhhhh-cccCCCeecCCCccCcc
Q 042735 223 LILRGNQLIGHLP----SEIG--SLTKLEFLNLSTNRFSSL----IPESLG-NLLKLHYLDLSKYQFIQ 280 (667)
Q Consensus 223 L~L~~n~l~~~~p----~~~~--~l~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~ls~n~~~~ 280 (667)
|+|++|.+.+.-. ..+. ..+.|++|++++|.+... +...+. ++++|+.|++++|++..
T Consensus 248 L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred hhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 8888887754322 2222 235788888888887643 223332 46778888888888643
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.41 E-value=5.9e-13 Score=113.83 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=54.8
Q ss_pred EEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeeccccc
Q 042735 150 FLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQ 229 (667)
Q Consensus 150 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 229 (667)
+|+|++|.++. ++ .+..+++|++|++++|+++. +|..++.+++|+.|++++|.+.+. | .++.+++|+.|++++|+
T Consensus 2 ~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 2 VLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR 76 (124)
T ss_dssp EEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred EEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence 44555555432 22 24455555555555555542 344455555566666665555432 2 35566666666666666
Q ss_pred ccccC-cccccCCCCCCeeeccCCcCCc
Q 042735 230 LIGHL-PSEIGSLTKLEFLNLSTNRFSS 256 (667)
Q Consensus 230 l~~~~-p~~~~~l~~L~~L~Ls~N~l~~ 256 (667)
+.... ...++.+++|+.|++++|.++.
T Consensus 77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred cCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 55322 2345666667777776666653
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.25 E-value=1.5e-13 Score=128.18 Aligned_cols=112 Identities=25% Similarity=0.250 Sum_probs=61.8
Q ss_pred chhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCc
Q 042735 139 SEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLN 218 (667)
Q Consensus 139 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 218 (667)
+..+..+++|++|+|++|.+.. ++ .+..+++|+.|+|++|.++. +|..+..+++|++|++++|.+... +.+..++
T Consensus 41 ~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~ 115 (198)
T d1m9la_ 41 DATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKLV 115 (198)
T ss_dssp HHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHHH
T ss_pred hhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccccccccccccccccccc--ccccccc
Confidence 4456666666666666666643 22 35556666666666666543 333333344566666666665532 2355556
Q ss_pred ccceeecccccccccCc-ccccCCCCCCeeeccCCcCC
Q 042735 219 SLTKLILRGNQLIGHLP-SEIGSLTKLEFLNLSTNRFS 255 (667)
Q Consensus 219 ~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~ 255 (667)
+|+.|++++|+++.... ..+..+++|+.|+|++|.+.
T Consensus 116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred cccccccccchhccccccccccCCCccceeecCCCccc
Confidence 66666666666543211 24555666666666666554
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.20 E-value=2.4e-13 Score=126.75 Aligned_cols=131 Identities=24% Similarity=0.313 Sum_probs=91.8
Q ss_pred ccCccCCCCCCCCEEEccCCcCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccccccccCcccccC
Q 042735 161 EIASNWGKCPKLSTLNVSMNNITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGNQLIGHLPSEIGS 240 (667)
Q Consensus 161 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 240 (667)
.++.++..+++|+.|+|++|+|+. ++ .+.++++|+.|+|++|.+.. +|..+..+++|+.|++++|.++. + +.+..
T Consensus 39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~ 113 (198)
T d1m9la_ 39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-L-SGIEK 113 (198)
T ss_dssp CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCC-H-HHHHH
T ss_pred hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-ccccccccccccccccccccccc-c-ccccc
Confidence 345567778888888888888874 33 47778888888888888763 45545556678888888888764 2 34677
Q ss_pred CCCCCeeeccCCcCCccch-hhhhcccCCCeecCCCccCccccch----------hhhcCCCCCEEE
Q 042735 241 LTKLEFLNLSTNRFSSLIP-ESLGNLLKLHYLDLSKYQFIQELPK----------ELGKLVQLSELE 296 (667)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~ls~n~~~~~~p~----------~l~~l~~L~~L~ 296 (667)
+++|+.|++++|+++.... ..+..+++|+.|++++|++....+. .+..+++|+.||
T Consensus 114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 7888888888888876422 4577788888888888876443332 145677777765
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=4.9e-11 Score=106.13 Aligned_cols=104 Identities=18% Similarity=0.112 Sum_probs=61.2
Q ss_pred cEEEeeCcccccccCccCCCCCCCcEEEccCC-ccccccchhhhcCCCCCEEECcCCccCCccCccCCCCCCCCEEEccC
Q 042735 101 ERVIVGGNHFRGPIPKCLRNCPNLVRISLEGN-NMRGTISEAFGIYLNLTFLDISDNNFFGEIASNWGKCPKLSTLNVSM 179 (667)
Q Consensus 101 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 179 (667)
+.++..++++. ..|..+..+++|++|++.+| .++...+.+|.++++|+.|+|++|++....+.+|..+++|++|+|++
T Consensus 11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~ 89 (156)
T d2ifga3 11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (156)
T ss_dssp SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence 34444444444 23555666666777777544 36655556666666666666666666655566666666666666666
Q ss_pred CcCCCCcCccccCCCCcCeeeccCCcc
Q 042735 180 NNITRSIPLEIGNLSTLNEFDLSLNHI 206 (667)
Q Consensus 180 n~l~~~~p~~~~~l~~L~~L~L~~n~l 206 (667)
|+++...+..+. ...|+.|+|++|.+
T Consensus 90 N~l~~l~~~~~~-~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 90 NALESLSWKTVQ-GLSLQELVLSGNPL 115 (156)
T ss_dssp SCCSCCCSTTTC-SCCCCEEECCSSCC
T ss_pred CCCcccChhhhc-cccccccccCCCcc
Confidence 666643333333 33566666666655
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=9.3e-11 Score=104.31 Aligned_cols=104 Identities=16% Similarity=0.130 Sum_probs=58.7
Q ss_pred EEECcCCccCCccCccCCCCCCCCEEEccCC-cCCCCcCccccCCCCcCeeeccCCcccccCCccccCCcccceeecccc
Q 042735 150 FLDISDNNFFGEIASNWGKCPKLSTLNVSMN-NITRSIPLEIGNLSTLNEFDLSLNHIVGKIPKEFGKLNSLTKLILRGN 228 (667)
Q Consensus 150 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 228 (667)
.++.+++.+. ..|..+..+++|+.|++.+| .++...+..|.++++|+.|+|++|++..+.+..|.++++|+.|+|++|
T Consensus 12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N 90 (156)
T d2ifga3 12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (156)
T ss_dssp CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence 3444444443 23444555566666666544 355444455666666666666666666655666666666666666666
Q ss_pred cccccCcccccCCCCCCeeeccCCcCC
Q 042735 229 QLIGHLPSEIGSLTKLEFLNLSTNRFS 255 (667)
Q Consensus 229 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 255 (667)
++....+..+.. .+|+.|+|++|.+.
T Consensus 91 ~l~~l~~~~~~~-~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 91 ALESLSWKTVQG-LSLQELVLSGNPLH 116 (156)
T ss_dssp CCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred CCcccChhhhcc-ccccccccCCCccc
Confidence 665333333333 35667777766663
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=6.8e-08 Score=85.88 Aligned_cols=82 Identities=24% Similarity=0.175 Sum_probs=46.7
Q ss_pred cCCcccceeecccccccccC--cccccCCCCCCeeeccCCcCCccchhhhhcccCCCeecCCCccCccccc-------hh
Q 042735 215 GKLNSLTKLILRGNQLIGHL--PSEIGSLTKLEFLNLSTNRFSSLIPESLGNLLKLHYLDLSKYQFIQELP-------KE 285 (667)
Q Consensus 215 ~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~n~~~~~~p-------~~ 285 (667)
..+++|++|+|++|+++... +..+..+++|+.|+|++|.++...+-.......|+.|++++|.+..... ..
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i 141 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence 44566666666666665322 2345566677777777777665433333334456667777766654332 22
Q ss_pred hhcCCCCCEEE
Q 042735 286 LGKLVQLSELE 296 (667)
Q Consensus 286 l~~l~~L~~L~ 296 (667)
+..+++|+.||
T Consensus 142 ~~~~P~L~~LD 152 (162)
T d1koha1 142 RERFPKLLRLD 152 (162)
T ss_dssp HTTSTTCCEET
T ss_pred HHHCCCCCEEC
Confidence 45567777664
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=4.1e-08 Score=87.36 Aligned_cols=86 Identities=27% Similarity=0.165 Sum_probs=56.0
Q ss_pred CccccCCCCcCeeeccCCcccccC--CccccCCcccceeecccccccccCcccccCCCCCCeeeccCCcCCccch-----
Q 042735 187 PLEIGNLSTLNEFDLSLNHIVGKI--PKEFGKLNSLTKLILRGNQLIGHLPSEIGSLTKLEFLNLSTNRFSSLIP----- 259 (667)
Q Consensus 187 p~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----- 259 (667)
+..+.++++|++|+|++|+++... +..+..+++|+.|+|++|.+....+-.+....+|+.|++++|.+.....
T Consensus 58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y 137 (162)
T d1koha1 58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137 (162)
T ss_dssp HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence 333456777788888888776432 2345667888888888888764333233344578888888888875433
Q ss_pred --hhhhcccCCCeec
Q 042735 260 --ESLGNLLKLHYLD 272 (667)
Q Consensus 260 --~~~~~l~~L~~L~ 272 (667)
..+..+++|+.||
T Consensus 138 ~~~i~~~~P~L~~LD 152 (162)
T d1koha1 138 ISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHTTSTTCCEET
T ss_pred HHHHHHHCCCCCEEC
Confidence 2355678888876
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.34 E-value=6.3e-05 Score=66.38 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=23.2
Q ss_pred CCCCCCEEEccCc-ccccc----CCccccCCCCCCeeeccccccc
Q 042735 25 NLKSLVKLGLGGN-QFRGS----LPSSVGNLSSLRYLFLFENNLS 64 (667)
Q Consensus 25 ~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~ 64 (667)
+.+.|++|+|+++ .++.. +-..+...++|+.|+|++|.+.
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~ 57 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 57 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence 4566777777753 34421 2224455566777777777664
|
| >d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: APH phosphotransferases domain: Type IIIa 3',5"-aminoglycoside phosphotransferase species: Enterococcus faecalis [TaxId: 1351]
Probab=97.29 E-value=0.00031 Score=66.69 Aligned_cols=90 Identities=16% Similarity=0.091 Sum_probs=58.6
Q ss_pred HHHHHHcCCcCcceeecccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC-CCCeeEEEEEEEeC
Q 042735 415 EIIRAINDFDAKYCIGSGRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR-HRNIVKFYGFCSHA 493 (667)
Q Consensus 415 ~~~~~~~~f~~~~~lg~g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~~~g~~~~~ 493 (667)
|+.+.+..|...+..+.++-+.||+... +++.+.+|+...... .....+.+|++.+..+. |--+-+++++..++
T Consensus 8 ~l~~~~~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~----~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~ 82 (263)
T d1j7la_ 8 ELKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYK----GTTYDVEREKDMMLWLEGKLPVPKVLHFERHD 82 (263)
T ss_dssp HHHHHHTTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGT----TSTTCHHHHHHHHHHHTTTSCCCCEEEEEEET
T ss_pred HHHHhhhceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCcc----cchhhHHHHHHHHHHHhccCCCCcEEEEEecC
Confidence 5566666776554434444578999875 444567787643211 11123667888877664 43356777888888
Q ss_pred CceEEEEEecCCCChH
Q 042735 494 RHSILIYEYLKRGSLA 509 (667)
Q Consensus 494 ~~~~lv~ey~~~g~L~ 509 (667)
+..++||||++|..+.
T Consensus 83 ~~~~lv~~~l~G~~~~ 98 (263)
T d1j7la_ 83 GWSNLLMSEADGVLCS 98 (263)
T ss_dssp TEEEEEEECCSSEEHH
T ss_pred CceEEEEEeccccccc
Confidence 8999999999988764
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.22 E-value=9.1e-05 Score=65.31 Aligned_cols=60 Identities=12% Similarity=0.062 Sum_probs=27.3
Q ss_pred CCCCCeeeccCCcCCccc----hhhhhcccCCCeecCCCccCcc-------ccchhhhcCCCCCEEECcCC
Q 042735 241 LTKLEFLNLSTNRFSSLI----PESLGNLLKLHYLDLSKYQFIQ-------ELPKELGKLVQLSELELSHN 300 (667)
Q Consensus 241 l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~ls~n~~~~-------~~p~~l~~l~~L~~L~l~~n 300 (667)
.+.|+.|+|++|.+.... -..+...+.|+.|++++|.... .+...+...+.|+.|+++.+
T Consensus 71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 344555555555544321 1122333445555555443211 12334445566666666554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.30 E-value=0.00042 Score=60.75 Aligned_cols=19 Identities=11% Similarity=-0.034 Sum_probs=11.7
Q ss_pred ccccCCCCCCeeeccCCcC
Q 042735 236 SEIGSLTKLEFLNLSTNRF 254 (667)
Q Consensus 236 ~~~~~l~~L~~L~Ls~N~l 254 (667)
..+...++|+.|+++.+..
T Consensus 126 ~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 126 NMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp HHHHHCSSCCEEECCCSSH
T ss_pred HHHHhCCCcCEEeCcCCCC
Confidence 3445567777777765543
|
| >d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: APH phosphotransferases domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]
Probab=96.28 E-value=0.0017 Score=60.99 Aligned_cols=73 Identities=18% Similarity=0.126 Sum_probs=51.2
Q ss_pred eeccc-CeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcC--CCCeeEEEEEEEeCCceEEEEEecCC
Q 042735 429 IGSGR-HGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIR--HRNIVKFYGFCSHARHSILIYEYLKR 505 (667)
Q Consensus 429 lg~g~-~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~--H~niv~~~g~~~~~~~~~lv~ey~~~ 505 (667)
+..|. -+.||+....++..+.+|....... ..+.+|++.++.+. .-.+.+++++..+++..++||||++|
T Consensus 18 ~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~~-------~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G 90 (255)
T d1nd4a_ 18 QTIGCSDAAVFRLSAQGRPVLFVKTDLSGAL-------NELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPG 90 (255)
T ss_dssp CSCTTSSCEEEEEECTTSCCEEEEEECSCTT-------SCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSS
T ss_pred cCCcccCCeEEEEEeCCCCEEEEEeCCccCH-------hHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeec
Confidence 34454 3679999988888888887654321 13556777776654 23356678888888899999999987
Q ss_pred CCh
Q 042735 506 GSL 508 (667)
Q Consensus 506 g~L 508 (667)
.++
T Consensus 91 ~~~ 93 (255)
T d1nd4a_ 91 QDL 93 (255)
T ss_dssp EET
T ss_pred ccc
Confidence 765
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.15 E-value=0.0011 Score=57.90 Aligned_cols=63 Identities=21% Similarity=0.159 Sum_probs=31.2
Q ss_pred cCCCCCCeeeccCCcCCcc----chhhhhcccCCCeecC--CCccCcc----ccchhhhcCCCCCEEECcCCC
Q 042735 239 GSLTKLEFLNLSTNRFSSL----IPESLGNLLKLHYLDL--SKYQFIQ----ELPKELGKLVQLSELELSHNF 301 (667)
Q Consensus 239 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l--s~n~~~~----~~p~~l~~l~~L~~L~l~~n~ 301 (667)
...++++.+++++|.+... +-..+...+.|+.++| ++|.+.. .+...+...+.|+.|+++.+.
T Consensus 71 ~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 71 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred hhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 3445566666666655422 1223334455554333 3344322 233445566777777776553
|
| >d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: APH phosphotransferases domain: Methylthioribose kinase MtnK species: Bacillus subtilis [TaxId: 1423]
Probab=93.37 E-value=0.042 Score=54.69 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=46.3
Q ss_pred ceeecccCeEEEEEEeCC-CceEEEEecCCCCC--Cc-hHHhHHHHHHHHHHHHhcC-C--CCeeEEEEEEEeCCceEEE
Q 042735 427 YCIGSGRHGSVYRAELPS-KEFLAVKKFNSPLP--SD-QIADQKEFFAEIEALTKIR-H--RNIVKFYGFCSHARHSILI 499 (667)
Q Consensus 427 ~~lg~g~~g~vy~~~~~~-~~~~avk~~~~~~~--~~-~~~~~~~~~~E~~~l~~l~-H--~niv~~~g~~~~~~~~~lv 499 (667)
+.||.|....||++...+ ++.+.||.-..... .. ......+...|.+.++.+. + ..+.+++++ +++..++|
T Consensus 32 ~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~~lv 109 (392)
T d2pula1 32 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVTV 109 (392)
T ss_dssp EECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEEE
T ss_pred EEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCCCEEE
Confidence 358999999999998755 56788885432110 00 0011123446777776553 2 345566655 45567899
Q ss_pred EEecCCCC
Q 042735 500 YEYLKRGS 507 (667)
Q Consensus 500 ~ey~~~g~ 507 (667)
|||+++..
T Consensus 110 mE~L~~~~ 117 (392)
T d2pula1 110 MEDLSHLK 117 (392)
T ss_dssp ECCCTTSE
T ss_pred EeccCCcc
Confidence 99998654
|
| >d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: APH phosphotransferases domain: RdoA species: Escherichia coli [TaxId: 562]
Probab=86.30 E-value=0.51 Score=45.00 Aligned_cols=72 Identities=11% Similarity=0.184 Sum_probs=45.4
Q ss_pred ccCeEEEEEEeCCCceEEEEecCCCCCCchHHhHHHHHHHHHHHHhcCCCCe-----eEEE--EEEEeCCceEEEEEecC
Q 042735 432 GRHGSVYRAELPSKEFLAVKKFNSPLPSDQIADQKEFFAEIEALTKIRHRNI-----VKFY--GFCSHARHSILIYEYLK 504 (667)
Q Consensus 432 g~~g~vy~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~l~H~ni-----v~~~--g~~~~~~~~~lv~ey~~ 504 (667)
+.--.||+++.++|..+++|....... ..+++..|.+.+..+....+ +..- ......+..+.+++|++
T Consensus 33 s~EN~vy~v~~~dg~~~VlK~~rp~~~-----s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~ 107 (325)
T d1zyla1 33 SYENRVYQFQDEDRRRFVVKFYRPERW-----TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVG 107 (325)
T ss_dssp CSSSEEEEECCTTCCCEEEEEECTTTS-----CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCC
T ss_pred cccceeEEEEcCCCCEEEEEEeCCCCC-----CHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecC
Confidence 334689999999999999998764322 23456677777766542221 1111 12234567888999998
Q ss_pred CCCh
Q 042735 505 RGSL 508 (667)
Q Consensus 505 ~g~L 508 (667)
|..+
T Consensus 108 G~~~ 111 (325)
T d1zyla1 108 GRQF 111 (325)
T ss_dssp CEEC
T ss_pred CcCC
Confidence 7543
|