Citrus Sinensis ID: 042757

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
MPISRFLFFSSKHRFRQPLNLIRRFDLSKRTQSCSYTKSSRQSHRNPADYFLSPQETKASRSWSTYVIPAGGLLGLAGIATFVHYNDERRAVRKGQGENSGPNRVTGPIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMKKAST
ccccHHHHHHcccccccccHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccEEEcccccccEEEEEEEccccccccHHHHHHHHHHHHHHcHHccccccEEEEEEccccccHHHHHHHHHHcccccEEEcccHHHHHHHHHHccEEEEEEccccccEEEEccEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHcc
ccHHHHHHHHHHHcccccHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEccccccccHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHcccEEEccccHHHHHHHHHHcEEEEcccccccccEEEEcEEEEEEEcccccHHHHccccccHHHHHHHHHHHHHHHcc
mpisrflffsskhrfrqplnlirrfdlskrtqscsytkssrqshrnpadyflspqetkasrswstyvipaggllgLAGIATFVHYnderravrkgqgensgpnrvtgpiiggpftlidtenrLVTENNFLGNWVLLYFGytsspdvgpeQVQMMAKAIDILdskknlkilpifvtidpqrdtpAHLRAYLKEFNSrivgltgpvGAIRQMAQEYRVFFKKVEEEGDDYLVESshnmylmnpslevVRCFGVEYTAEELAEEISKEMKKAST
mpisrflffsskhrfrqplnlirrfdlskrtqscsytkssrqshrnpaDYFLSPQETKASRSWSTYVIPAGGLLGLAGIATFVHYNDERRAvrkgqgensgpnrvtgpiiggPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFvtidpqrdtPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMKKAST
MPISRFLFFSSKHRFRQPLNLIRRFDLSKRTQSCSYTKSSRQSHRNPADYFLSPQETKASRSWSTYVIPaggllglagiaTFVHYNDERRAVRKGQGENSGPNRVTGPIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMKKAST
*****FLFFSSKHRFRQPLNLIRRFD***********************************SWSTYVIPAGGLLGLAGIATFVHYNDE****************VTGPIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAE***************
******************************************************************VIPAGGLLGLAGIATFVHYN***********************IGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMKK***
MPISRFLFFSSKHRFRQPLNLIRRFDLSKR***************NPADYFLSPQETKASRSWSTYVIPAGGLLGLAGIATFVHYNDERRAVRKGQGENSGPNRVTGPIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAE***********
MPISRFLFFSSKHRFRQPLNLIRR*D************************************WSTYVIPAGGLLGLAGIATFVHYNDERRAVRKGQGENSGPNRVTGPIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMKKAST
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPISRFLFFSSKHRFRQPLNLIRRFDLSKRTQSCSYTKSSRQSHRNPADYFLSPQETKASRSWSTYVIPAGGLLGLAGIATFVHYNDERRAVRKGQGENSGPNRVTGPIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMKKAST
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query271 2.2.26 [Sep-21-2011]
Q8LAL0276 Protein SCO1 homolog 2, m yes no 0.970 0.952 0.601 3e-88
Q8VYP0334 Protein SCO1 homolog 1, m no no 0.741 0.601 0.349 1e-37
O42899263 Protein sco1 OS=Schizosac yes no 0.756 0.779 0.357 9e-35
A1A4J8305 Protein SCO1 homolog, mit yes no 0.590 0.524 0.382 5e-30
O75880301 Protein SCO1 homolog, mit yes no 0.590 0.531 0.388 7e-30
Q5SUC9284 Protein SCO1 homolog, mit yes no 0.590 0.563 0.382 9e-30
P38072301 Protein SCO2, mitochondri yes no 0.712 0.641 0.331 1e-28
P23833295 Protein SCO1, mitochondri no no 0.708 0.650 0.333 3e-28
Q1RIN4204 SCO2-like protein RBE_069 yes no 0.553 0.735 0.383 5e-27
Q5RH02279 Protein SCO2 homolog, mit yes no 0.656 0.637 0.317 2e-26
>sp|Q8LAL0|SCO12_ARATH Protein SCO1 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=HCC2 PE=2 SV=1 Back     alignment and function desciption
 Score =  325 bits (832), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 166/276 (60%), Positives = 206/276 (74%), Gaps = 13/276 (4%)

Query: 4   SRFLFFSSKHRFRQPLNLIRRFDLSKRTQSCSYTKSSRQSHRNPADYFLSPQE--TKA-S 60
            R L  S K+   Q  + +RR   SKR QS +Y KS+RQ H  P    L P    T+A S
Sbjct: 4   CRRLVLSCKN---QAASFLRRCGPSKRIQSVNYCKSTRQGHEIPDVKPLFPTGGGTQAPS 60

Query: 61  RSWSTYVIPAGGLLGLAGIATFVHYNDERRAVRKGQ-----GENSGPNR-VTGPIIGGPF 114
           RS + Y +PA  LLG AG   F+HYNDERRAV +GQ     G   G N  V GPIIGGPF
Sbjct: 61  RSRARYAVPAI-LLGFAGFVGFLHYNDERRAVPRGQASSNSGCGCGSNTTVKGPIIGGPF 119

Query: 115 TLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFV 174
           TL+ TEN++VTEN+F G WVLLYFGY+ SPDVGPEQ++MM+KA+D L+SK N KILP+FV
Sbjct: 120 TLVSTENKIVTENDFCGKWVLLYFGYSFSPDVGPEQLKMMSKAVDKLESKHNEKILPVFV 179

Query: 175 TIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSH 234
           T+DPQRDTP+HL AYLKEF+SRI+GLTG   A+RQMAQEYRV+FKKV+E+G+DYLV++SH
Sbjct: 180 TLDPQRDTPSHLHAYLKEFDSRILGLTGTASAMRQMAQEYRVYFKKVQEDGEDYLVDTSH 239

Query: 235 NMYLMNPSLEVVRCFGVEYTAEELAEEISKEMKKAS 270
           NMYL+NP +E+VRCFGVEY  +EL++E+ KE+   S
Sbjct: 240 NMYLINPKMEIVRCFGVEYNPDELSQELLKEVASVS 275
Thought to play a role in cellular copper homeostasis, mitochondrial redox signaling or insertion of copper into the active site of COX (By similarity). Participates in copper and redox homeostasis.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8VYP0|SCO11_ARATH Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=HCC1 PE=2 SV=1 Back     alignment and function description
>sp|O42899|SCO1_SCHPO Protein sco1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sco1 PE=3 SV=1 Back     alignment and function description
>sp|A1A4J8|SCO1_BOVIN Protein SCO1 homolog, mitochondrial OS=Bos taurus GN=SCO1 PE=2 SV=1 Back     alignment and function description
>sp|O75880|SCO1_HUMAN Protein SCO1 homolog, mitochondrial OS=Homo sapiens GN=SCO1 PE=1 SV=1 Back     alignment and function description
>sp|Q5SUC9|SCO1_MOUSE Protein SCO1 homolog, mitochondrial OS=Mus musculus GN=Sco1 PE=2 SV=1 Back     alignment and function description
>sp|P38072|SCO2_YEAST Protein SCO2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO2 PE=1 SV=1 Back     alignment and function description
>sp|P23833|SCO1_YEAST Protein SCO1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO1 PE=1 SV=1 Back     alignment and function description
>sp|Q1RIN4|SCO22_RICBR SCO2-like protein RBE_0699 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0699 PE=3 SV=1 Back     alignment and function description
>sp|Q5RH02|SCO2_DANRE Protein SCO2 homolog, mitochondrial OS=Danio rerio GN=sco2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query271
224081158264 predicted protein [Populus trichocarpa] 0.970 0.996 0.658 1e-100
359496353270 PREDICTED: protein SCO1 homolog 2, mitoc 0.981 0.985 0.649 3e-98
356525489275 PREDICTED: protein SCO1 homolog 2, mitoc 0.977 0.963 0.650 2e-95
449451445268 PREDICTED: protein SCO1 homolog 2, mitoc 0.966 0.977 0.611 9e-91
224093764243 predicted protein [Populus trichocarpa] 0.896 1.0 0.663 6e-90
297802084276 electron transport SCO1/SenC family prot 0.922 0.905 0.623 1e-87
18420515276 electron transport SCO1/SenC family prot 0.970 0.952 0.601 1e-86
356511101241 PREDICTED: protein SCO1 homolog 2, mitoc 0.741 0.834 0.722 7e-83
255584850251 Protein sco1, putative [Ricinus communis 0.878 0.948 0.603 1e-77
242049092280 hypothetical protein SORBIDRAFT_02g02329 0.870 0.842 0.588 5e-74
>gi|224081158|ref|XP_002306313.1| predicted protein [Populus trichocarpa] gi|222855762|gb|EEE93309.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/272 (65%), Positives = 221/272 (81%), Gaps = 9/272 (3%)

Query: 1   MPISRFLFFSSKHRFRQPLNLIRRFDLSKRTQSCSYTKSSRQSH-RNPADYFLSPQETKA 59
           MPISR+LFFS+K R  Q LNL+RR   SKR QS  ++KS+ Q+H + P      PQ    
Sbjct: 1   MPISRYLFFSTKQRPGQCLNLLRRLGPSKRVQSSCFSKSTNQNHWKRPV-----PQVKVE 55

Query: 60  SRSWSTYVIPAGGLLGLAGIATFVHYNDERRAVRKGQGENSGPNRVTGPIIGGPFTLIDT 119
            ++    VIPA  +LG  G+A FVHYNDERRAV KGQG +     V GPIIGGPFTL++T
Sbjct: 56  LKAPRFLVIPAA-VLGFVGLAAFVHYNDERRAVPKGQGSDC--VNVKGPIIGGPFTLVNT 112

Query: 120 ENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQ 179
           EN++VTE +FLGNWVLLYFGYTSSPD+GPEQ++++ KA++ L+SK+NLK+LP+FVT+DPQ
Sbjct: 113 ENKVVTEKDFLGNWVLLYFGYTSSPDIGPEQLKLITKALNTLESKENLKVLPMFVTLDPQ 172

Query: 180 RDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLM 239
           RD P HLRAYL+EF SRIVGLTGPVGAIRQMAQEYRV+F+KVEEEGDDYLVE+SHNMYL+
Sbjct: 173 RDNPPHLRAYLEEFESRIVGLTGPVGAIRQMAQEYRVYFRKVEEEGDDYLVETSHNMYLI 232

Query: 240 NPSLEVVRCFGVEYTAEELAEEISKEMKKAST 271
           NP++EVV+CFGVEY AEEL+E I KE+K+ S+
Sbjct: 233 NPNMEVVKCFGVEYNAEELSEAIGKELKRTSS 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359496353|ref|XP_003635216.1| PREDICTED: protein SCO1 homolog 2, mitochondrial-like [Vitis vinifera] gi|296090611|emb|CBI40995.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356525489|ref|XP_003531357.1| PREDICTED: protein SCO1 homolog 2, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|449451445|ref|XP_004143472.1| PREDICTED: protein SCO1 homolog 2, mitochondrial-like [Cucumis sativus] gi|449522672|ref|XP_004168350.1| PREDICTED: protein SCO1 homolog 2, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224093764|ref|XP_002309982.1| predicted protein [Populus trichocarpa] gi|222852885|gb|EEE90432.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297802084|ref|XP_002868926.1| electron transport SCO1/SenC family protein [Arabidopsis lyrata subsp. lyrata] gi|297314762|gb|EFH45185.1| electron transport SCO1/SenC family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18420515|ref|NP_568068.1| electron transport SCO1/SenC family protein [Arabidopsis thaliana] gi|75154808|sp|Q8LAL0.1|SCO12_ARATH RecName: Full=Protein SCO1 homolog 2, mitochondrial; AltName: Full=Homolog of the copper chaperone SCO1 member 2; Short=HCC2; Flags: Precursor gi|21593335|gb|AAM65284.1| unknown [Arabidopsis thaliana] gi|87116634|gb|ABD19681.1| At4g39740 [Arabidopsis thaliana] gi|332661711|gb|AEE87111.1| electron transport SCO1/SenC family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356511101|ref|XP_003524268.1| PREDICTED: protein SCO1 homolog 2, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|255584850|ref|XP_002533141.1| Protein sco1, putative [Ricinus communis] gi|223527052|gb|EEF29237.1| Protein sco1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|242049092|ref|XP_002462290.1| hypothetical protein SORBIDRAFT_02g023290 [Sorghum bicolor] gi|241925667|gb|EER98811.1| hypothetical protein SORBIDRAFT_02g023290 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query271
TAIR|locus:2135232276 HCC2 "AT4G39740" [Arabidopsis 0.977 0.960 0.580 1.3e-77
TAIR|locus:2097673334 HCC1 "homologue of the copper 0.586 0.476 0.402 3.1e-35
POMBASE|SPBC119.06263 sco1 "copper chaperone Sco1 (p 0.756 0.779 0.347 2.9e-32
UNIPROTKB|F1SS60305 SCO1 "Uncharacterized protein" 0.590 0.524 0.388 3e-30
RGD|1559538284 Sco1 "SCO1 cytochrome c oxidas 0.590 0.563 0.388 7.9e-30
ASPGD|ASPL0000078140287 AN4842 [Emericella nidulans (t 0.656 0.620 0.385 1.3e-29
UNIPROTKB|A1A4J8305 SCO1 "Protein SCO1 homolog, mi 0.590 0.524 0.382 1.3e-29
UNIPROTKB|O75880301 SCO1 "Protein SCO1 homolog, mi 0.627 0.564 0.372 1.6e-29
MGI|MGI:106362284 Sco1 "SCO cytochrome oxidase d 0.590 0.563 0.382 1.6e-29
UNIPROTKB|J9NS66304 SCO1 "Uncharacterized protein" 0.594 0.529 0.380 3.4e-29
TAIR|locus:2135232 HCC2 "AT4G39740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 162/279 (58%), Positives = 203/279 (72%)

Query:     1 MPISRFLFFSSKHRFRQPLNLIRRFDLSKRTQSCSYTKSSRQSHRNPADYFLSPQE--TK 58
             +P  R L  S K+   Q  + +RR   SKR QS +Y KS+RQ H  P    L P    T+
Sbjct:     2 LPCRR-LVLSCKN---QAASFLRRCGPSKRIQSVNYCKSTRQGHEIPDVKPLFPTGGGTQ 57

Query:    59 A-SRSWSTYVIPXXXXXXXXXXXTFVHYNDERRAVRKGQGE-NSG----PNR-VTGPIIG 111
             A SRS + Y +P            F+HYNDERRAV +GQ   NSG     N  V GPIIG
Sbjct:    58 APSRSRARYAVPAILLGFAGFVG-FLHYNDERRAVPRGQASSNSGCGCGSNTTVKGPIIG 116

Query:   112 GPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILP 171
             GPFTL+ TEN++VTEN+F G WVLLYFGY+ SPDVGPEQ++MM+KA+D L+SK N KILP
Sbjct:   117 GPFTLVSTENKIVTENDFCGKWVLLYFGYSFSPDVGPEQLKMMSKAVDKLESKHNEKILP 176

Query:   172 IFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVE 231
             +FVT+DPQRDTP+HL AYLKEF+SRI+GLTG   A+RQMAQEYRV+FKKV+E+G+DYLV+
Sbjct:   177 VFVTLDPQRDTPSHLHAYLKEFDSRILGLTGTASAMRQMAQEYRVYFKKVQEDGEDYLVD 236

Query:   232 SSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMKKAS 270
             +SHNMYL+NP +E+VRCFGVEY  +EL++E+ KE+   S
Sbjct:   237 TSHNMYLINPKMEIVRCFGVEYNPDELSQELLKEVASVS 275
GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0055070 "copper ion homeostasis" evidence=IMP
TAIR|locus:2097673 HCC1 "homologue of the copper chaperone SCO1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPBC119.06 sco1 "copper chaperone Sco1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|F1SS60 SCO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1559538 Sco1 "SCO1 cytochrome c oxidase assembly protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ASPGD|ASPL0000078140 AN4842 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|A1A4J8 SCO1 "Protein SCO1 homolog, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O75880 SCO1 "Protein SCO1 homolog, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:106362 Sco1 "SCO cytochrome oxidase deficient homolog 1 (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J9NS66 SCO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LAL0SCO12_ARATHNo assigned EC number0.60140.97040.9528yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_V2835
hypothetical protein (264 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.22680001
Predicted protein (170 aa)
• •   • 0.698

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
cd02968142 cd02968, SCO, SCO (an acronym for Synthesis of Cyt 2e-57
COG1999207 COG1999, COG1999, Uncharacterized protein SCO1/Sen 6e-43
pfam02630152 pfam02630, SCO1-SenC, SCO1/SenC 5e-36
>gnl|CDD|239266 cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold Back     alignment and domain information 
 Score =  180 bits (458), Expect = 2e-57
 Identities = 57/141 (40%), Positives = 88/141 (62%)

Query: 110 IGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKI 169
           IG  FTL D + R VT ++  G  VL+YFGYT  PDV P  +  +A+A+  L +     +
Sbjct: 1   IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDV 60

Query: 170 LPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYL 229
             +F+++DP+RDTP  L+AY K F    +GLTG    I  +A+ + V+++KV E+  DYL
Sbjct: 61  QVVFISVDPERDTPEVLKAYAKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYL 120

Query: 230 VESSHNMYLMNPSLEVVRCFG 250
           V+ S  +YL++P  ++VR +G
Sbjct: 121 VDHSAAIYLVDPDGKLVRYYG 141

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II. Length = 142
>gnl|CDD|224910 COG1999, COG1999, Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] Back     alignment and domain information
>gnl|CDD|202321 pfam02630, SCO1-SenC, SCO1/SenC Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 271
KOG2792280 consensus Putative cytochrome C oxidase assembly p 100.0
COG1999207 Uncharacterized protein SCO1/SenC/PrrC, involved i 100.0
PF02630174 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam 100.0
cd02968142 SCO SCO (an acronym for Synthesis of Cytochrome c 99.96
PTZ00056199 glutathione peroxidase; Provisional 99.93
PRK15412185 thiol:disulfide interchange protein DsbE; Provisio 99.92
cd00340152 GSH_Peroxidase Glutathione (GSH) peroxidase family 99.92
PLN02399236 phospholipid hydroperoxide glutathione peroxidase 99.92
PLN02412167 probable glutathione peroxidase 99.91
TIGR02540153 gpx7 putative glutathione peroxidase Gpx7. This mo 99.9
PRK03147173 thiol-disulfide oxidoreductase; Provisional 99.9
PRK09437154 bcp thioredoxin-dependent thiol peroxidase; Review 99.9
TIGR00385173 dsbE periplasmic protein thiol:disulfide oxidoredu 99.89
PRK00522167 tpx lipid hydroperoxide peroxidase; Provisional 99.89
TIGR02661189 MauD methylamine dehydrogenase accessory protein M 99.88
cd02969171 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot 99.88
PTZ00256183 glutathione peroxidase; Provisional 99.88
COG1225157 Bcp Peroxiredoxin [Posttranslational modification, 99.87
PF08534146 Redoxin: Redoxin; InterPro: IPR013740 This redoxin 99.87
cd03017140 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit 99.87
cd03018149 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik 99.87
cd03014143 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 99.86
cd03008146 TryX_like_RdCVF Tryparedoxin (TryX)-like family, R 99.85
PF00578124 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per 99.85
cd03010127 TlpA_like_DsbE TlpA-like family, DsbE (also known 99.85
TIGR03137187 AhpC peroxiredoxin. This gene contains two invaria 99.85
cd03015173 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- 99.85
cd02971140 PRX_family Peroxiredoxin (PRX) family; composed of 99.83
PRK13190202 putative peroxiredoxin; Provisional 99.83
PRK10606183 btuE putative glutathione peroxidase; Provisional 99.83
cd03012126 TlpA_like_DipZ_like TlpA-like family, DipZ-like su 99.82
cd02967114 mauD Methylamine utilization (mau) D family; mauD 99.82
cd02964132 TryX_like_family Tryparedoxin (TryX)-like family; 99.81
PRK10382187 alkyl hydroperoxide reductase subunit C; Provision 99.81
cd03016203 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub 99.8
PRK13191215 putative peroxiredoxin; Provisional 99.8
PRK13599215 putative peroxiredoxin; Provisional 99.8
PRK14018 521 trifunctional thioredoxin/methionine sulfoxide red 99.8
cd02966116 TlpA_like_family TlpA-like family; composed of Tlp 99.8
cd03011123 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso 99.8
cd03009131 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family 99.8
PRK15000200 peroxidase; Provisional 99.79
TIGR01626184 ytfJ_HI0045 conserved hypothetical protein YtfJ-fa 99.79
PTZ00137261 2-Cys peroxiredoxin; Provisional 99.79
PRK13728181 conjugal transfer protein TrbB; Provisional 99.78
PRK13189222 peroxiredoxin; Provisional 99.78
cd02970149 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot 99.77
PTZ00253199 tryparedoxin peroxidase; Provisional 99.76
PLN02919 1057 haloacid dehalogenase-like hydrolase family protei 99.75
PF1390595 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ 99.74
COG0450194 AhpC Peroxiredoxin [Posttranslational modification 99.68
TIGR02738153 TrbB type-F conjugative transfer system pilin asse 99.67
KOG2501157 consensus Thioredoxin, nucleoredoxin and related p 99.63
cd03013155 PRX5_like Peroxiredoxin (PRX) family, PRX5-like su 99.62
cd02950142 TxlA TRX-like protein A (TxlA) family; TxlA was or 99.58
COG0386162 BtuE Glutathione peroxidase [Posttranslational mod 99.41
cd02985103 TRX_CDSP32 TRX family, chloroplastic drought-induc 99.39
TIGR02740271 TraF-like TraF-like protein. This protein is relat 99.34
cd02951125 SoxW SoxW family; SoxW is a bacterial periplasmic 99.3
cd0295696 ybbN ybbN protein family; ybbN is a hypothetical p 99.27
cd02999100 PDI_a_ERp44_like PDIa family, endoplasmic reticulu 99.26
KOG1651171 consensus Glutathione peroxidase [Posttranslationa 99.24
PRK09381109 trxA thioredoxin; Provisional 99.22
KOG0910150 consensus Thioredoxin-like protein [Posttranslatio 99.22
cd02963111 TRX_DnaJ TRX domain, DnaJ domain containing protei 99.2
cd02948102 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus 99.19
KOG0855211 consensus Alkyl hydroperoxide reductase, thiol spe 99.19
COG2077158 Tpx Peroxiredoxin [Posttranslational modification, 99.18
cd02953104 DsbDgamma DsbD gamma family; DsbD gamma is the C-t 99.17
KOG0852196 consensus Alkyl hydroperoxide reductase, thiol spe 99.16
PF13098112 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ 99.12
PRK10996139 thioredoxin 2; Provisional 99.11
cd03003101 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam 99.1
TIGR01126102 pdi_dom protein disulfide-isomerase domain. This m 99.05
cd0294997 TRX_NTR TRX domain, novel NADPH thioredoxin reduct 99.03
cd02994101 PDI_a_TMX PDIa family, TMX subfamily; composed of 99.03
cd03000104 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o 99.01
cd02962152 TMX2 TMX2 family; composed of proteins similar to 99.0
cd03005102 PDI_a_ERp46 PDIa family, endoplasmic reticulum pro 99.0
cd03004104 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam 98.98
PHA02278103 thioredoxin-like protein 98.97
cd03002109 PDI_a_MPD1_like PDI family, MPD1-like subfamily; c 98.95
PLN00410142 U5 snRNP protein, DIM1 family; Provisional 98.94
cd02997104 PDI_a_PDIR PDIa family, PDIR subfamily; composed o 98.94
TIGR01068101 thioredoxin thioredoxin. Several proteins, such as 98.93
cd02954114 DIM1 Dim1 family; Dim1 is also referred to as U5 s 98.93
COG3118 304 Thioredoxin domain-containing protein [Posttransla 98.93
PTZ00443224 Thioredoxin domain-containing protein; Provisional 98.92
cd02996108 PDI_a_ERp44 PDIa family, endoplasmic reticulum pro 98.91
cd02993109 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat 98.89
cd02959117 ERp19 Endoplasmic reticulum protein 19 (ERp19) fam 98.87
cd03006113 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil 98.85
PF00085103 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio 98.84
cd02998105 PDI_a_ERp38 PDIa family, endoplasmic reticulum pro 98.83
cd0298497 TRX_PICOT TRX domain, PICOT (for PKC-interacting c 98.82
TIGR01295122 PedC_BrcD bacteriocin transport accessory protein, 98.79
KOG0854224 consensus Alkyl hydroperoxide reductase, thiol spe 98.79
KOG0907106 consensus Thioredoxin [Posttranslational modificat 98.78
PTZ0005198 thioredoxin; Provisional 98.77
PRK00293571 dipZ thiol:disulfide interchange protein precursor 98.75
cd02961101 PDI_a_family Protein Disulfide Isomerase (PDIa) fa 98.73
cd03065120 PDI_b_Calsequestrin_N PDIb family, Calsequestrin s 98.72
cd03001103 PDI_a_P5 PDIa family, P5 subfamily; composed of eu 98.71
PF00255108 GSHPx: Glutathione peroxidase; InterPro: IPR000889 98.69
cd02975113 PfPDO_like_N Pyrococcus furiosus protein disulfide 98.67
PTZ00102477 disulphide isomerase; Provisional 98.66
cd02955124 SSP411 TRX domain, SSP411 protein family; members 98.66
PTZ00102 477 disulphide isomerase; Provisional 98.63
cd02965111 HyaE HyaE family; HyaE is also called HupG and Hox 98.6
cd02986114 DLP Dim1 family, Dim1-like protein (DLP) subfamily 98.6
TIGR0041182 redox_disulf_1 small redox-active disulfide protei 98.57
cd0294793 TRX_family TRX family; composed of two groups: Gro 98.56
cd02992114 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas 98.55
cd02995104 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain 98.54
PF00837237 T4_deiodinase: Iodothyronine deiodinase; InterPro: 98.52
cd02958114 UAS UAS family; UAS is a domain of unknown functio 98.49
cd02989113 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior 98.47
TIGR02739256 TraF type-F conjugative transfer system pilin asse 98.46
PF13728215 TraF: F plasmid transfer operon protein 98.4
cd02957113 Phd_like Phosducin (Phd)-like family; composed of 98.38
TIGR01130 462 ER_PDI_fam protein disulfide isomerases, eukaryoti 98.37
cd02952119 TRP14_like Human TRX-related protein 14 (TRP14)-li 98.37
PRK13703248 conjugal pilus assembly protein TraF; Provisional 98.36
PTZ00062 204 glutaredoxin; Provisional 98.23
TIGR00424463 APS_reduc 5'-adenylylsulfate reductase, thioredoxi 98.23
TIGR0041276 redox_disulf_2 small redox-active disulfide protei 98.22
cd02982103 PDI_b'_family Protein Disulfide Isomerase (PDIb') 98.22
cd02987175 Phd_like_Phd Phosducin (Phd)-like family, Phd subf 98.15
TIGR02187215 GlrX_arch Glutaredoxin-like domain protein. This f 98.12
PLN02309457 5'-adenylylsulfate reductase 98.11
cd0302689 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid 98.03
PF14595129 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. 98.02
cd02988192 Phd_like_VIAF Phosducin (Phd)-like family, Viral i 97.99
PF05176252 ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th 97.97
TIGR01130462 ER_PDI_fam protein disulfide isomerases, eukaryoti 97.94
TIGR02187215 GlrX_arch Glutaredoxin-like domain protein. This f 97.91
cd02960130 AGR Anterior Gradient (AGR) family; members of thi 97.83
PHA0212575 thioredoxin-like protein 97.79
smart00594122 UAS UAS domain. 97.75
PF04592238 SelP_N: Selenoprotein P, N terminal region; InterP 97.67
COG0526127 TrxA Thiol-disulfide isomerase and thioredoxins [P 97.63
cd0297367 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- 97.63
KOG0908 288 consensus Thioredoxin-like protein [Posttranslatio 97.63
PF1389982 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ 97.31
cd0165969 TRX_superfamily Thioredoxin (TRX) superfamily; a l 97.3
COG0678165 AHP1 Peroxiredoxin [Posttranslational modification 97.15
COG4232569 Thiol:disulfide interchange protein [Posttranslati 96.92
cd02991116 UAS_ETEA UAS family, ETEA subfamily; composed of p 96.9
KOG0190 493 consensus Protein disulfide isomerase (prolyl 4-hy 96.87
PF05988211 DUF899: Bacterial protein of unknown function (DUF 96.86
TIGR0219674 GlrX_YruB Glutaredoxin-like protein, YruB-family. 96.82
KOG1731 606 consensus FAD-dependent sulfhydryl oxidase/quiesci 96.79
KOG0191 383 consensus Thioredoxin/protein disulfide isomerase 96.59
PF09695160 YtfJ_HI0045: Bacterial protein of unknown function 96.58
PRK11657251 dsbG disulfide isomerase/thiol-disulfide oxidase; 96.54
cd03007116 PDI_a_ERp29_N PDIa family, endoplasmic reticulum p 96.47
cd03023154 DsbA_Com1_like DsbA family, Com1-like subfamily; c 96.45
PRK10877232 protein disulfide isomerase II DsbC; Provisional 96.34
cd03020197 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil 96.31
PRK11509132 hydrogenase-1 operon protein HyaE; Provisional 96.31
KOG0912 375 consensus Thiol-disulfide isomerase and thioredoxi 96.12
COG4312247 Uncharacterized protein conserved in bacteria [Fun 95.88
PF13778118 DUF4174: Domain of unknown function (DUF4174) 95.75
PF03190163 Thioredox_DsbH: Protein of unknown function, DUF25 95.6
PF1319276 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY 95.55
COG2143182 Thioredoxin-related protein [Posttranslational mod 95.52
PF06110119 DUF953: Eukaryotic protein of unknown function (DU 95.47
TIGR0220077 GlrX_actino Glutaredoxin-like protein. This family 95.11
cd03019178 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m 94.87
PRK1120085 grxA glutaredoxin 1; Provisional 94.52
KOG0190493 consensus Protein disulfide isomerase (prolyl 4-hy 94.34
TIGR0218084 GRX_euk Glutaredoxin. This model represents eukary 93.98
PF11009105 DUF2847: Protein of unknown function (DUF2847); In 93.62
KOG3425128 consensus Uncharacterized conserved protein [Funct 93.37
TIGR03143555 AhpF_homolog putative alkyl hydroperoxide reductas 93.16
PF13911115 AhpC-TSA_2: AhpC/TSA antioxidant enzyme 92.8
PRK10954207 periplasmic protein disulfide isomerase I; Provisi 92.6
cd02977105 ArsC_family Arsenate Reductase (ArsC) family; comp 91.96
KOG0541171 consensus Alkyl hydroperoxide reductase/peroxiredo 91.8
PF13462162 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV 90.89
cd0297673 NrdH NrdH-redoxin (NrdH) family; NrdH is a small m 90.35
COG1651244 DsbG Protein-disulfide isomerase [Posttranslationa 89.77
PRK15317 517 alkyl hydroperoxide reductase subunit F; Provision 88.84
KOG0191383 consensus Thioredoxin/protein disulfide isomerase 88.38
TIGR0218386 GRXA Glutaredoxin, GrxA family. This model include 88.33
cd0302773 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg 88.18
cd0206672 GRX_family Glutaredoxin (GRX) family; composed of 88.15
cd0341875 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b 87.81
PF0046260 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl 87.51
cd03035105 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s 86.94
TIGR03140 515 AhpF alkyl hydroperoxide reductase, F subunit. Thi 86.9
PF06053249 DUF929: Domain of unknown function (DUF929); Inter 86.55
cd03032115 ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub 86.23
TIGR0218179 GRX_bact Glutaredoxin, GrxC family. This family of 85.98
cd0341982 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h 85.92
TIGR01617117 arsC_related transcriptional regulator, Spx/MgsR f 84.98
PRK01655131 spxA transcriptional regulator Spx; Reviewed 84.95
KOG4277 468 consensus Uncharacterized conserved protein, conta 84.81
cd03036111 ArsC_like Arsenate Reductase (ArsC) family, unknow 84.67
PRK12559131 transcriptional regulator Spx; Provisional 83.77
cd0297298 DsbA_family DsbA family; consists of DsbA and DsbA 83.16
PHA03050108 glutaredoxin; Provisional 81.09
PF06491136 Disulph_isomer: Disulphide isomerase; InterPro: IP 80.14
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=5.6e-43  Score=295.46  Aligned_cols=210  Identities=35%  Similarity=0.683  Sum_probs=177.5

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCCCcCCCeEEEcCCCCeeecCcCCCCEEEEEEe
Q 042757           60 SRSWSTYVIPAGGLLGLAGIATFVHYNDERRAVRKGQGENSGPNRVTGPIIGGPFTLIDTENRLVTENNFLGNWVLLYFG  139 (271)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vll~F~  139 (271)
                      +++.+|..+.++.+++++.+++|.+...++.... +........++|+|+++++|+|.|.+|+.++..||+|||+||||+
T Consensus        69 ~gp~~w~~~~~t~Alg~~~~g~~~Y~~~~k~~~~-e~~r~~~~~~~gk~~iGGpF~L~d~~Gk~~te~df~Gkw~LiYFG  147 (280)
T KOG2792|consen   69 PGPFSWRSLLATFALGLGLGGALAYLKKEKARLL-EKERESANRTAGKPAIGGPFSLVDHDGKRVTEKDFLGKWSLIYFG  147 (280)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhcCCCccCCceEEEecCCCeecccccccceEEEEec
Confidence            3666666665553444444444444433333321 111101225689999999999999999999999999999999999


Q ss_pred             eCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHHHHHcCceee
Q 042757          140 YTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFK  219 (271)
Q Consensus       140 at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~  219 (271)
                      +|+||+|||.||..|.++.+++.++.+..+..||||+||+||+++.+++|+++|+|.+.+|||+.+++.+++++|+|||.
T Consensus       148 FThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs  227 (280)
T KOG2792|consen  148 FTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFS  227 (280)
T ss_pred             ccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHHHHHhEEeec
Confidence            99999999999999999999999887767779999999999999999999999999999999999999999999999999


Q ss_pred             e-eccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHhhhhc
Q 042757          220 K-VEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMKKAS  270 (271)
Q Consensus       220 ~-~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL~~~~  270 (271)
                      + +.+.+++|.|+|+..+|||||+|+++..||.+.+.+++.+.|...+..+.
T Consensus       228 ~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~y~  279 (280)
T KOG2792|consen  228 TGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVASYR  279 (280)
T ss_pred             cCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHhcc
Confidence            8 44558999999999999999999999999999999999999999888765

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only] Back     alignment and domain information
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems Back     alignment and domain information
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold Back     alignment and domain information
>PTZ00056 glutathione peroxidase; Provisional Back     alignment and domain information
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional Back     alignment and domain information
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate Back     alignment and domain information
>PLN02399 phospholipid hydroperoxide glutathione peroxidase Back     alignment and domain information
>PLN02412 probable glutathione peroxidase Back     alignment and domain information
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7 Back     alignment and domain information
>PRK03147 thiol-disulfide oxidoreductase; Provisional Back     alignment and domain information
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed Back     alignment and domain information
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily Back     alignment and domain information
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional Back     alignment and domain information
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD Back     alignment and domain information
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs Back     alignment and domain information
>PTZ00256 glutathione peroxidase; Provisional Back     alignment and domain information
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins Back     alignment and domain information
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides Back     alignment and domain information
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE Back     alignment and domain information
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) Back     alignment and domain information
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors Back     alignment and domain information
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells Back     alignment and domain information
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif Back     alignment and domain information
>TIGR03137 AhpC peroxiredoxin Back     alignment and domain information
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides Back     alignment and domain information
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified Back     alignment and domain information
>PRK13190 putative peroxiredoxin; Provisional Back     alignment and domain information
>PRK10606 btuE putative glutathione peroxidase; Provisional Back     alignment and domain information
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain Back     alignment and domain information
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source Back     alignment and domain information
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX Back     alignment and domain information
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional Back     alignment and domain information
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine Back     alignment and domain information
>PRK13191 putative peroxiredoxin; Provisional Back     alignment and domain information
>PRK13599 putative peroxiredoxin; Provisional Back     alignment and domain information
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional Back     alignment and domain information
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins Back     alignment and domain information
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif Back     alignment and domain information
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif Back     alignment and domain information
>PRK15000 peroxidase; Provisional Back     alignment and domain information
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 Back     alignment and domain information
>PTZ00137 2-Cys peroxiredoxin; Provisional Back     alignment and domain information
>PRK13728 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>PRK13189 peroxiredoxin; Provisional Back     alignment and domain information
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs Back     alignment and domain information
>PTZ00253 tryparedoxin peroxidase; Provisional Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A Back     alignment and domain information
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB Back     alignment and domain information
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] Back     alignment and domain information
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol Back     alignment and domain information
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus Back     alignment and domain information
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif Back     alignment and domain information
>TIGR02740 TraF-like TraF-like protein Back     alignment and domain information
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation Back     alignment and domain information
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain Back     alignment and domain information
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 Back     alignment and domain information
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK09381 trxA thioredoxin; Provisional Back     alignment and domain information
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain Back     alignment and domain information
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein Back     alignment and domain information
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD Back     alignment and domain information
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A Back     alignment and domain information
>PRK10996 thioredoxin 2; Provisional Back     alignment and domain information
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains Back     alignment and domain information
>TIGR01126 pdi_dom protein disulfide-isomerase domain Back     alignment and domain information
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains Back     alignment and domain information
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX Back     alignment and domain information
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus Back     alignment and domain information
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library Back     alignment and domain information
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains Back     alignment and domain information
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains Back     alignment and domain information
>PHA02278 thioredoxin-like protein Back     alignment and domain information
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein Back     alignment and domain information
>PLN00410 U5 snRNP protein, DIM1 family; Provisional Back     alignment and domain information
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) Back     alignment and domain information
>TIGR01068 thioredoxin thioredoxin Back     alignment and domain information
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00443 Thioredoxin domain-containing protein; Provisional Back     alignment and domain information
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention Back     alignment and domain information
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases Back     alignment and domain information
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain Back     alignment and domain information
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox Back     alignment and domain information
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms Back     alignment and domain information
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 Back     alignment and domain information
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes Back     alignment and domain information
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative Back     alignment and domain information
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00051 thioredoxin; Provisional Back     alignment and domain information
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional Back     alignment and domain information
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants Back     alignment and domain information
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle Back     alignment and domain information
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) Back     alignment and domain information
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1 Back     alignment and domain information
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding Back     alignment and domain information
>PTZ00102 disulphide isomerase; Provisional Back     alignment and domain information
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif Back     alignment and domain information
>PTZ00102 disulphide isomerase; Provisional Back     alignment and domain information
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO Back     alignment and domain information
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 Back     alignment and domain information
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 Back     alignment and domain information
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains Back     alignment and domain information
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein Back     alignment and domain information
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 Back     alignment and domain information
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1 Back     alignment and domain information
>cd02958 UAS UAS family; UAS is a domain of unknown function Back     alignment and domain information
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif Back     alignment and domain information
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF Back     alignment and domain information
>PF13728 TraF: F plasmid transfer operon protein Back     alignment and domain information
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions Back     alignment and domain information
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic Back     alignment and domain information
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 Back     alignment and domain information
>PRK13703 conjugal pilus assembly protein TraF; Provisional Back     alignment and domain information
>PTZ00062 glutaredoxin; Provisional Back     alignment and domain information
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent Back     alignment and domain information
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 Back     alignment and domain information
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants Back     alignment and domain information
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions Back     alignment and domain information
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein Back     alignment and domain information
>PLN02309 5'-adenylylsulfate reductase Back     alignment and domain information
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides Back     alignment and domain information
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A Back     alignment and domain information
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis Back     alignment and domain information
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex Back     alignment and domain information
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic Back     alignment and domain information
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein Back     alignment and domain information
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus Back     alignment and domain information
>PHA02125 thioredoxin-like protein Back     alignment and domain information
>smart00594 UAS UAS domain Back     alignment and domain information
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma [] Back     alignment and domain information
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] Back     alignment and domain information
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) Back     alignment and domain information
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A Back     alignment and domain information
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold Back     alignment and domain information
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] Back     alignment and domain information
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals Back     alignment and domain information
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like Back     alignment and domain information
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family Back     alignment and domain information
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ Back     alignment and domain information
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional Back     alignment and domain information
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells Back     alignment and domain information
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti Back     alignment and domain information
>PRK10877 protein disulfide isomerase II DsbC; Provisional Back     alignment and domain information
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold Back     alignment and domain information
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional Back     alignment and domain information
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] Back     alignment and domain information
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13778 DUF4174: Domain of unknown function (DUF4174) Back     alignment and domain information
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins Back     alignment and domain information
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B Back     alignment and domain information
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like Back     alignment and domain information
>TIGR02200 GlrX_actino Glutaredoxin-like protein Back     alignment and domain information
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold Back     alignment and domain information
>PRK11200 grxA glutaredoxin 1; Provisional Back     alignment and domain information
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02180 GRX_euk Glutaredoxin Back     alignment and domain information
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol Back     alignment and domain information
>KOG3425 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit Back     alignment and domain information
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme Back     alignment and domain information
>PRK10954 periplasmic protein disulfide isomerase I; Provisional Back     alignment and domain information
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx Back     alignment and domain information
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A Back     alignment and domain information
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile Back     alignment and domain information
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional Back     alignment and domain information
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02183 GRXA Glutaredoxin, GrxA family Back     alignment and domain information
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions Back     alignment and domain information
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain Back     alignment and domain information
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain Back     alignment and domain information
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors Back     alignment and domain information
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC Back     alignment and domain information
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit Back     alignment and domain information
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function Back     alignment and domain information
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes Back     alignment and domain information
>TIGR02181 GRX_bact Glutaredoxin, GrxC family Back     alignment and domain information
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain Back     alignment and domain information
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family Back     alignment and domain information
>PRK01655 spxA transcriptional regulator Spx; Reviewed Back     alignment and domain information
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] Back     alignment and domain information
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC Back     alignment and domain information
>PRK12559 transcriptional regulator Spx; Provisional Back     alignment and domain information
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins Back     alignment and domain information
>PHA03050 glutaredoxin; Provisional Back     alignment and domain information
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
2gqk_A173 Solution Structure Of Human Ni(Ii)-Sco1 Length = 17 9e-31
2ggt_A164 Crystal Structure Of Human Sco1 Complexed With Nick 8e-30
2hrf_A173 Solution Structure Of Cu(i) P174l Hsco1 Length = 17 1e-29
2b7j_A200 Crystal Structure Of Yeast Sco1 With Copper Bound L 2e-28
1wp0_A165 Human Sco1 Length = 165 1e-26
2rli_A171 Solution Structure Of Cu(i) Human Sco2 Length = 171 5e-26
2k6v_A172 Solution Structures Of Apo Sco1 Protein From Thermu 8e-15
>pdb|2GQK|A Chain A, Solution Structure Of Human Ni(Ii)-Sco1 Length = 173 Back     alignment and structure 
Iteration: 1

 Score =  130 bits (326), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 103/162 (63%), Gaps = 2/162 (1%)
Query: 108 PIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNL 167
           P++GGPF+L        T+ ++LG W+L+YFG+T  PDV PE+++ M + +D +DS   L
Sbjct: 6   PLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTL 65
Query: 168 KIL-PIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFK-KVEEEG 225
             L P+F++IDP+RDT   +  Y+KEF+ ++VGLTG    + Q+A+ YRV++    ++E 
Sbjct: 66  PDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDED 125
Query: 226 DDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMK 267
           +DY+V+ +  MYL+ P  E +  FG      E+A  I+  M+
Sbjct: 126 EDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR 167
>pdb|2GGT|A Chain A, Crystal Structure Of Human Sco1 Complexed With Nickel. Length = 164 Back     alignment and structure
>pdb|2HRF|A Chain A, Solution Structure Of Cu(i) P174l Hsco1 Length = 173 Back     alignment and structure
>pdb|2B7J|A Chain A, Crystal Structure Of Yeast Sco1 With Copper Bound Length = 200 Back     alignment and structure
>pdb|1WP0|A Chain A, Human Sco1 Length = 165 Back     alignment and structure
>pdb|2RLI|A Chain A, Solution Structure Of Cu(i) Human Sco2 Length = 171 Back     alignment and structure
>pdb|2K6V|A Chain A, Solution Structures Of Apo Sco1 Protein From Thermus Thermophilus Length = 172 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query271
2b7k_A200 SCO1 protein; metallochaperone, cytochrome C oxida 3e-74
2ggt_A164 SCO1 protein homolog, mitochondrial; copper chaper 2e-70
2rli_A171 SCO2 protein homolog, mitochondrial; copper protei 9e-70
2k6v_A172 Putative cytochrome C oxidase assembly protein; th 1e-60
1xzo_A174 BSSCO, hypothetical protein YPMQ; thioredoxin-like 2e-40
3me7_A170 Putative uncharacterized protein; electron transfe 8e-37
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A Length = 200 Back     alignment and structure
 Score =  224 bits (573), Expect = 3e-74
 Identities = 61/182 (33%), Positives = 101/182 (55%), Gaps = 4/182 (2%)

Query: 89  RRAVRKGQGENSGPNRVTGPIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGP 148
           RR   + + E +       P +GGPF L D      TE N LG + ++YFG+++ PD+ P
Sbjct: 1   RRLETQKEAEANRG--YGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICP 58

Query: 149 EQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIR 208
           +++  +   ++ L SK  + + P+F+T DP RD+PA L+ YL +F+  I+GLTG    ++
Sbjct: 59  DELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVK 118

Query: 209 QMAQEYRVFFKKVE--EEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEM 266
              ++YRV+F      + G DYLV+ S   YLM+P  + V   G  Y  +   ++I + +
Sbjct: 119 NACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHV 178

Query: 267 KK 268
           K 
Sbjct: 179 KS 180
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A Length = 164 Back     alignment and structure
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} Length = 171 Back     alignment and structure
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} Length = 172 Back     alignment and structure
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A Length = 174 Back     alignment and structure
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A Length = 170 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query271
4hde_A170 SCO1/SENC family lipoprotein; structural genomics, 100.0
2rli_A171 SCO2 protein homolog, mitochondrial; copper protei 100.0
2ggt_A164 SCO1 protein homolog, mitochondrial; copper chaper 100.0
2b7k_A200 SCO1 protein; metallochaperone, cytochrome C oxida 100.0
3me7_A170 Putative uncharacterized protein; electron transfe 100.0
2k6v_A172 Putative cytochrome C oxidase assembly protein; th 99.97
1xzo_A174 BSSCO, hypothetical protein YPMQ; thioredoxin-like 99.96
3fw2_A150 Thiol-disulfide oxidoreductase; structural genomic 99.94
2f8a_A208 Glutathione peroxidase 1; thioredoxin fold, struct 99.94
4g2e_A157 Peroxiredoxin; redox protein, structural genomics, 99.94
3kij_A180 Probable glutathione peroxidase 8; human PDI-perox 99.94
2v1m_A169 Glutathione peroxidase; selenium, selenocysteine, 99.94
3gkn_A163 Bacterioferritin comigratory protein; BCP, PRX, at 99.93
2i3y_A215 Epididymal secretory glutathione peroxidase; thior 99.93
2r37_A207 Glutathione peroxidase 3; plasma, structural genom 99.93
2obi_A183 PHGPX, GPX-4, phospholipid hydroperoxide glutathio 99.93
2gs3_A185 PHGPX, GPX-4, phospholipid hydroperoxide glutathio 99.93
3dwv_A187 Glutathione peroxidase-like protein; alpha beta, 3 99.93
3lor_A160 Thiol-disulfide isomerase and thioredoxins; PSI, M 99.93
3eyt_A158 Uncharacterized protein SPOA0173; thioredoxin-like 99.93
3cmi_A171 Peroxiredoxin HYR1; thioredoxin-like fold, oxidore 99.93
3ixr_A179 Bacterioferritin comigratory protein; alpha beta p 99.93
2p31_A181 CL683, glutathione peroxidase 7; thioredoxin fold, 99.93
2p5q_A170 Glutathione peroxidase 5; thioredoxin fold, oxidor 99.93
2lrn_A152 Thiol:disulfide interchange protein; structural ge 99.93
2vup_A190 Glutathione peroxidase-like protein; oxidoreductas 99.92
4gqc_A164 Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f 99.92
3ewl_A142 Uncharacterized conserved protein BF1870; alpha-be 99.92
3or5_A165 Thiol:disulfide interchange protein, thioredoxin p 99.92
3lwa_A183 Secreted thiol-disulfide isomerase; thioredoxin, P 99.92
4fo5_A143 Thioredoxin-like protein; AHPC/TSA family protein, 99.92
3raz_A151 Thioredoxin-related protein; structural genomics, 99.92
3drn_A161 Peroxiredoxin, bacterioferritin comigratory prote 99.92
2f9s_A151 Thiol-disulfide oxidoreductase RESA; thioredoxin-l 99.91
3fkf_A148 Thiol-disulfide oxidoreductase; structural genomic 99.91
3ia1_A154 THIO-disulfide isomerase/thioredoxin; oxidoreducta 99.91
2yzh_A171 Probable thiol peroxidase; redox protein, antioxid 99.91
2l5o_A153 Putative thioredoxin; structural genomics, unknown 99.91
3kh7_A176 Thiol:disulfide interchange protein DSBE; TRX-like 99.91
1psq_A163 Probable thiol peroxidase; structural genomics, NY 99.91
1n8j_A186 AHPC, alkyl hydroperoxide reductase C22 protein; p 99.91
3u5r_E218 Uncharacterized protein; structural genomics, PSI- 99.91
2ywi_A196 Hypothetical conserved protein; uncharacterized co 99.91
3eur_A142 Uncharacterized protein; PSI2,MCSG, conserved prot 99.91
2cvb_A188 Probable thiol-disulfide isomerase/thioredoxin; re 99.91
1jfu_A186 Thiol:disulfide interchange protein TLPA; thioredo 99.91
1xvw_A160 Hypothetical protein RV2238C/MT2298; thioredoxin f 99.9
2c0d_A221 Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th 99.9
1we0_A187 Alkyl hydroperoxide reductase C; peroxiredoxin, AH 99.9
3p7x_A166 Probable thiol peroxidase; thioredoxin fold, oxido 99.9
3erw_A145 Sporulation thiol-disulfide oxidoreductase A; thio 99.9
2lrt_A152 Uncharacterized protein; structural genomics, thio 99.9
1q98_A165 Thiol peroxidase, TPX; structural genomics, NYSGXR 99.9
2pn8_A211 Peroxiredoxin-4; thioredoxin, oxidoreductase, stru 99.9
3hcz_A148 Possible thiol-disulfide isomerase; APC61559.2, cy 99.9
2jsy_A167 Probable thiol peroxidase; solution structure, ant 99.9
1xvq_A175 Thiol peroxidase; thioredoxin fold, structural gen 99.9
3kcm_A154 Thioredoxin family protein; SGX, thioredoxin prote 99.89
3gl3_A152 Putative thiol:disulfide interchange protein DSBE; 99.89
2b5x_A148 YKUV protein, TRXY; thioredoxin-like, oxidoreducta 99.89
3ha9_A165 Uncharacterized thioredoxin-like protein; PSI, MCS 99.89
2lja_A152 Putative thiol-disulfide oxidoreductase; structura 99.89
4evm_A138 Thioredoxin family protein; structural genomics, n 99.89
2bmx_A195 Alkyl hydroperoxidase C; peroxiredoxin, antioxidan 99.89
3zrd_A200 Thiol peroxidase; oxidoreductase, 2Cys peroxiredox 99.89
1tp9_A162 Peroxiredoxin, PRX D (type II); oligomer, thioredo 99.89
3qpm_A240 Peroxiredoxin; oxidoreductase, thioredoxin fold, p 99.89
2a4v_A159 Peroxiredoxin DOT5; yeast nuclear thiol peroxidase 99.89
2i81_A213 2-Cys peroxiredoxin; structural genomics consortiu 99.89
2hyx_A 352 Protein DIPZ; thioredoxin fold, jelly-roll, struct 99.89
3ztl_A222 Thioredoxin peroxidase; oxidoreductase, reductase, 99.89
1zzo_A136 RV1677; thioredoxin fold, structural genomics, PSI 99.88
1lu4_A136 Soluble secreted antigen MPT53; thioredoxin-like f 99.88
2h01_A192 2-Cys peroxiredoxin; thioredoxin peroxidase, struc 99.88
1zof_A198 Alkyl hydroperoxide-reductase; decamer, toroide-sh 99.88
2b1k_A168 Thiol:disulfide interchange protein DSBE; C-termin 99.88
3tjj_A254 Peroxiredoxin-4; thioredoxin fold, sulfenylation, 99.88
3keb_A224 Probable thiol peroxidase; structural genomics, AP 99.87
1uul_A202 Tryparedoxin peroxidase homologue; peroxiredoxin, 99.87
1qmv_A197 Human thioredoxin peroxidase-B; peroxiredoxin, sul 99.87
1zye_A220 Thioredoxin-dependent peroxide reductase; catenane 99.87
2v2g_A233 Peroxiredoxin 6; oxidoreductase, antioxidant enzym 99.87
1kng_A156 Thiol:disulfide interchange protein CYCY; thioredo 99.87
3hdc_A158 Thioredoxin family protein; ATCC53774, DSM 7210, , 99.86
1prx_A224 HORF6; peroxiredoxin, hydrogen peroxide, redox reg 99.86
2lus_A143 Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci 99.77
3mng_A173 Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, 99.86
2ls5_A159 Uncharacterized protein; structural genomics, unkn 99.77
3uma_A184 Hypothetical peroxiredoxin protein; nysgrc, PSI bi 99.86
1xcc_A220 1-Cys peroxiredoxin; unknown function, structural 99.85
2wfc_A167 Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan 99.85
2h30_A164 Thioredoxin, peptide methionine sulfoxide reductas 99.85
1i5g_A144 Tryparedoxin II; electron transport; HET: TS5; 1.4 99.84
3sbc_A216 Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c 99.84
2pwj_A171 Mitochondrial peroxiredoxin; alpha and beta protei 99.83
3tue_A219 Tryparedoxin peroxidase; thioredoxin fold, peroxir 99.83
1nm3_A241 Protein HI0572; hybrid, peroxiredoxin, glutaredoxi 99.82
4eo3_A 322 Bacterioferritin comigratory protein/NADH dehydro; 99.82
1o8x_A146 Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot 99.82
3a2v_A249 Probable peroxiredoxin; thioredoxin peroxidase, hy 99.82
3s9f_A165 Tryparedoxin; thioredoxin fold, disulfide reductas 99.82
1o73_A144 Tryparedoxin; electron transport, trypanosomatid, 99.81
4f82_A176 Thioredoxin reductase; structural genomics, niaid, 99.7
2xhf_A171 Peroxiredoxin 5; oxidoreductase, antioxidant enzym 99.65
1xiy_A182 Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin 99.63
3hxs_A141 Thioredoxin, TRXP; electron transport; 2.00A {Bact 99.59
2l57_A126 Uncharacterized protein; structural genomics, unkn 99.58
2fwh_A134 Thiol:disulfide interchange protein DSBD; thioredo 99.54
2ju5_A154 Thioredoxin disulfide isomerase; protein, oxidored 99.53
3ul3_B128 Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 99.5
3p2a_A148 Thioredoxin 2, putative thioredoxin-like protein; 99.45
3f9u_A172 Putative exported cytochrome C biogenesis-related; 99.43
3fk8_A133 Disulphide isomerase; APC61824.1, xylella fastidio 99.42
2kuc_A130 Putative disulphide-isomerase; structural genomics 99.38
3tco_A109 Thioredoxin (TRXA-1); disulfide oxidoreductase, ox 99.38
2l5l_A136 Thioredoxin; structural genomics, electron transpo 99.38
3f3q_A109 Thioredoxin-1; His TAG, electron transport, cytopl 99.37
1sen_A164 Thioredoxin-like protein P19; endoplasmic reticulu 99.37
2trx_A108 Thioredoxin; electron transport; 1.68A {Escherichi 99.36
1thx_A115 Thioredoxin, thioredoxin 2; oxido-reductase, elect 99.36
3zzx_A105 Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va 99.36
2dml_A130 Protein disulfide-isomerase A6; thioredoxin domain 99.36
3qfa_C116 Thioredoxin; protein-protein complex, rossmann fol 99.36
2voc_A112 Thioredoxin; electron transport, homodimer, disulf 99.35
1z6n_A167 Hypothetical protein PA1234; alpha-beta-alpha sand 99.35
1nsw_A105 Thioredoxin, TRX; thermostability, electron transp 99.35
3gix_A149 Thioredoxin-like protein 4B; PRE-mRNA splicing, TX 99.35
1t00_A112 Thioredoxin, TRX; redox regulation, multifunction 99.35
4euy_A105 Uncharacterized protein; structural genomics, PSI- 99.35
3die_A106 Thioredoxin, TRX; electron transport, SWAP domain, 99.34
1w4v_A119 Thioredoxin, mitochondrial; antioxidant enzyme, mi 99.34
1dby_A107 Chloroplast thioredoxin M CH2; thioredoxin CH2, ch 99.34
1x5d_A133 Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC 99.34
2pu9_C111 TRX-F, thioredoxin F-type, chloroplast; protein-pr 99.34
3d22_A139 TRXH4, thioredoxin H-type; electron transport, cyt 99.34
3cxg_A133 Putative thioredoxin; malaria, structural GEN oxid 99.33
1xfl_A124 Thioredoxin H1; AT3G51030, structural genomics, pr 99.32
2dj1_A140 Protein disulfide-isomerase A4; protein ERP-72, ER 99.32
2e0q_A104 Thioredoxin; electron transport; 1.49A {Sulfolobus 99.31
2o8v_B128 Thioredoxin 1; disulfide crosslinked complex, oxid 99.31
2lst_A130 Thioredoxin; structural genomics, NEW YORK structu 98.98
3gnj_A111 Thioredoxin domain protein; APC92103, STR genomics 99.3
3hz4_A140 Thioredoxin; NYSGXRC, PSI-II, reduced form, protei 99.3
1fb6_A105 Thioredoxin M; electron transport; 2.10A {Spinacia 99.29
3d6i_A112 Monothiol glutaredoxin-3; thioredoxin-like, electr 99.29
1ep7_A112 Thioredoxin CH1, H-type; electron transport; 2.10A 99.29
2i4a_A107 Thioredoxin; acidophIle, disulfide exchange, oxido 99.29
2wz9_A153 Glutaredoxin-3; protein binding; 1.55A {Homo sapie 99.28
2ppt_A155 Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc 99.28
3m9j_A105 Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} 99.28
2dj3_A133 Protein disulfide-isomerase A4; protein ERP-72, ER 99.27
1r26_A125 Thioredoxin; redox-active disulfide, electron tran 99.27
2yzu_A109 Thioredoxin; redox protein, electron transport, st 99.26
3apq_A210 DNAJ homolog subfamily C member 10; thioredoxin fo 99.26
1faa_A124 Thioredoxin F; electron transport; 1.85A {Spinacia 99.25
2vm1_A118 Thioredoxin, thioredoxin H isoform 1.; oxidoreduct 99.25
2vlu_A122 Thioredoxin, thioredoxin H isoform 2.; oxidoreduct 99.25
1v98_A140 Thioredoxin; oxidoreductase, structural genomics, 99.24
1gh2_A107 Thioredoxin-like protein; redox-active center, ele 99.24
1qgv_A142 Spliceosomal protein U5-15KD; snRNP, thioredoxin, 99.24
2vim_A104 Thioredoxin, TRX; thioredoxin fold, oxidoreductase 99.23
1xwb_A106 Thioredoxin; dimerization, redox regulation, THI X 99.23
2xc2_A117 Thioredoxinn; oxidoreductase, protein disulfide re 99.22
3emx_A135 Thioredoxin; structural genomics, oxidoreductase, 99.22
2j23_A121 Thioredoxin; immune protein, autoreactivity, cross 99.22
3qou_A 287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.22
3h79_A127 Thioredoxin-like protein; thioredoxin fold, cataly 99.22
1syr_A112 Thioredoxin; SGPP, structural genomics, PSI, prote 99.22
1ti3_A113 Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul 99.22
2l6c_A110 Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu 99.21
2djj_A121 PDI, protein disulfide-isomerase; thioredoxin fold 99.21
1x5e_A126 Thioredoxin domain containing protein 1; TMX, TXND 99.21
2i1u_A121 Thioredoxin, TRX, MPT46; redox protein, electron t 99.21
1zma_A118 Bacterocin transport accessory protein; alpha-beta 99.2
3aps_A122 DNAJ homolog subfamily C member 10; thioredoxin fo 99.19
2oe3_A114 Thioredoxin-3; electron transport, alpha/beta sand 99.19
3uvt_A111 Thioredoxin domain-containing protein 5; thioredox 99.17
3idv_A 241 Protein disulfide-isomerase A4; thioredoxin-like f 99.17
3dxb_A222 Thioredoxin N-terminally fused to PUF60(UHM); spli 99.16
2qsi_A137 Putative hydrogenase expression/formation protein; 99.14
2av4_A160 Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI 99.14
1oaz_A123 Thioredoxin 1; immune system, antibody/complex, an 99.14
1a8l_A226 Protein disulfide oxidoreductase; PDI, thioredoxin 99.12
2f51_A118 Thioredoxin; electron transport; 1.90A {Trichomona 99.11
2yj7_A106 LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti 98.7
1mek_A120 Protein disulfide isomerase; electron transport, r 99.09
1fo5_A85 Thioredoxin; disulfide oxidoreductase, structural 99.09
2dbc_A135 PDCL2, unnamed protein product; phosducin-like pro 99.06
3t58_A 519 Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. 99.04
1nho_A85 Probable thioredoxin; beta sheet, alpha helix, oxi 99.04
3ph9_A151 Anterior gradient protein 3 homolog; thioredoxin f 99.02
3q6o_A 244 Sulfhydryl oxidase 1; protein disulfide isomerase, 99.02
2dj0_A137 Thioredoxin-related transmembrane protein 2; AVLA2 99.02
2qgv_A140 Hydrogenase-1 operon protein HYAE; alpha-beta prot 99.0
2hls_A243 Protein disulfide oxidoreductase; thioredoxin fold 98.96
3ira_A173 Conserved protein; methanosarcina mazei,structural 98.93
1wmj_A130 Thioredoxin H-type; structural genomics, program f 98.92
2es7_A142 Q8ZP25_salty, putative thiol-disulfide isomerase a 98.91
3ed3_A 298 Protein disulfide-isomerase MPD1; thioredoxin-like 98.87
3iv4_A112 Putative oxidoreductase; APC23140, meticillin-resi 98.87
2dlx_A153 UBX domain-containing protein 7; UAS domain, prote 98.84
3idv_A241 Protein disulfide-isomerase A4; thioredoxin-like f 98.83
3f8u_A481 Protein disulfide-isomerase A3ERP57; endoplasmic r 98.82
3dml_A116 Putative uncharacterized protein; thioredoxin, oxi 98.81
2ywm_A229 Glutaredoxin-like protein; redox protein, structur 98.8
1ilo_A77 Conserved hypothetical protein MTH895; beta-alpha- 98.78
2r2j_A 382 Thioredoxin domain-containing protein 4; CRFS moti 98.78
1wou_A123 Thioredoxin -related protein, 14 kDa; electron tra 98.78
3qcp_A 470 QSOX from trypanosoma brucei (tbqsox); ERV fold, t 98.76
3kp8_A106 Vkorc1/thioredoxin domain protein; blood coagulati 98.73
1a0r_P245 Phosducin, MEKA, PP33; transducin, beta-gamma, sig 98.73
3evi_A118 Phosducin-like protein 2; alpha beta, 3-layer(ABA) 98.73
1eej_A216 Thiol:disulfide interchange protein; oxidoreductas 98.71
2trc_P217 Phosducin, MEKA, PP33; transducin, beta-gamma, sig 98.68
3gyk_A175 27KDA outer membrane protein; APC61738.2, siliciba 98.68
3f8u_A 481 Protein disulfide-isomerase A3ERP57; endoplasmic r 98.67
3apo_A 780 DNAJ homolog subfamily C member 10; PDI family, th 98.65
2b5e_A 504 Protein disulfide-isomerase; 2.40A {Saccharomyces 98.65
3uem_A361 Protein disulfide-isomerase; thioredoxin-like doma 98.61
3apo_A780 DNAJ homolog subfamily C member 10; PDI family, th 98.6
2b5e_A504 Protein disulfide-isomerase; 2.40A {Saccharomyces 98.58
1sji_A 350 Calsequestrin 2, calsequestrin, cardiac muscle iso 98.57
3hd5_A195 Thiol:disulfide interchange protein DSBA; protein 98.47
3h93_A192 Thiol:disulfide interchange protein DSBA; disulfid 98.47
3us3_A 367 Calsequestrin-1; calcium-binding protein; 1.74A {O 98.3
2znm_A195 Thiol:disulfide interchange protein DSBA; thioredo 98.29
3ga4_A178 Dolichyl-diphosphooligosaccharide-protein glycosyl 98.25
2djk_A133 PDI, protein disulfide-isomerase; thioredoxin fold 98.17
2e7p_A116 Glutaredoxin; thioredoxin fold, poplar, electron t 98.13
1a8l_A 226 Protein disulfide oxidoreductase; PDI, thioredoxin 98.12
1v58_A241 Thiol:disulfide interchange protein DSBG; reduced 98.12
1t3b_A211 Thiol:disulfide interchange protein DSBC; oxidored 98.1
2rem_A193 Disulfide oxidoreductase; disulfide oxidoreductase 98.09
2ywm_A 229 Glutaredoxin-like protein; redox protein, structur 98.04
1ttz_A87 Conserved hypothetical protein; structural genomic 97.98
1z6m_A175 Conserved hypothetical protein; structural genomic 97.96
3hz8_A193 Thiol:disulfide interchange protein DSBA; thiol-ox 97.94
2k8s_A80 Thioredoxin; dimer, structural genomics, PSI-2, pr 97.92
4h86_A199 Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch 97.92
1hyu_A 521 AHPF, alkyl hydroperoxide reductase subunit F; thi 97.9
1wjk_A100 C330018D20RIK protein; glutaredoxin, thioredoxin f 97.89
1ego_A85 Glutaredoxin; electron transport; NMR {Escherichia 97.78
2c0g_A 248 ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, 97.77
2fgx_A107 Putative thioredoxin; NET3, NESG, GFT-glutaredoxin 97.71
2qc7_A 240 ERP31, ERP28, endoplasmic reticulum protein ERP29; 97.66
3l9v_A189 Putative thiol-disulfide isomerase or thioredoxin; 97.42
3uem_A 361 Protein disulfide-isomerase; thioredoxin-like doma 97.32
2hls_A243 Protein disulfide oxidoreductase; thioredoxin fold 97.23
3feu_A185 Putative lipoprotein; alpha-beta structure, struct 97.15
4dvc_A184 Thiol:disulfide interchange protein DSBA; pilus as 97.08
3gv1_A147 Disulfide interchange protein; neisseria gonorrhoe 97.07
3kp9_A291 Vkorc1/thioredoxin domain protein; warfarin, disul 97.01
3c7m_A195 Thiol:disulfide interchange protein DSBA-like; red 96.86
3l9s_A191 Thiol:disulfide interchange protein; thioredoxin-f 96.73
3f4s_A226 Alpha-DSBA1, putative uncharacterized protein; thi 96.72
2ec4_A178 FAS-associated factor 1; UAS domain, protein FAF1, 96.69
3bci_A186 Disulfide bond protein A; thiol-disulfide oxidored 96.51
2lqo_A92 Putative glutaredoxin RV3198.1/MT3292; TRX fold, o 96.48
1r7h_A75 NRDH-redoxin; thioredoxin, glutaredoxin, redox pro 96.38
2cq9_A130 GLRX2 protein, glutaredoxin 2; glutathione-S-trans 96.02
2hze_A114 Glutaredoxin-1; thioredoxin fold, arsenic, dimethy 95.89
1un2_A197 DSBA, thiol-disulfide interchange protein; disulfi 95.77
3gha_A202 Disulfide bond formation protein D; BDBD, DSBA-lik 95.72
2ht9_A146 Glutaredoxin-2; thioredoxin fold, iron-sulfur clus 95.56
1h75_A81 Glutaredoxin-like protein NRDH; electron transport 95.47
3kzq_A208 Putative uncharacterized protein VP2116; protein w 95.44
3nzn_A103 Glutaredoxin; structural genomics, PSI2, MCSG, pro 95.32
3ic4_A92 Glutaredoxin (GRX-1); structural genomics, PSI, MC 95.28
1kte_A105 Thioltransferase; redox-active center, electron tr 95.25
4f9z_D227 Endoplasmic reticulum resident protein 27; thiored 94.43
3c1r_A118 Glutaredoxin-1; oxidized form, oxidoreductase, cyt 94.07
3msz_A89 Glutaredoxin 1; alpha-beta sandwich, center for st 94.04
3qmx_A99 Glutaredoxin A, glutaredoxin 3; electron transport 93.86
3rhb_A113 ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox 93.64
2in3_A216 Hypothetical protein; DSBA family, FRNE-like subfa 93.46
2klx_A89 Glutaredoxin; thioredoxin type domain, ssgcid, ele 93.19
1fov_A82 Glutaredoxin 3, GRX3; active site disulfide, CIS P 92.73
1rw1_A114 Conserved hypothetical protein YFFB; thioredoxin f 91.68
2khp_A92 Glutaredoxin; thioredoxin type domain, ssgcid, ele 91.33
2yan_A105 Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H 90.49
1wik_A109 Thioredoxin-like protein 2; picot homology 2 domai 89.95
2axo_A270 Hypothetical protein ATU2684; alpha beta protein., 89.78
2kok_A120 Arsenate reductase; brucellosis, zoonotic, oxidore 89.19
3ctg_A129 Glutaredoxin-2; reduced form, electron transport, 88.63
3l78_A120 Regulatory protein SPX; transcription, transcripti 88.43
3h8q_A114 Thioredoxin reductase 3; oxidoreductase, structura 88.38
1z3e_A132 Regulatory protein SPX; bacterial transcription re 87.49
3fz4_A120 Putative arsenate reductase; APC61768, structural 87.02
3gkx_A120 Putative ARSC family related protein; ARSC family 85.59
3gmf_A205 Protein-disulfide isomerase; oxidoreductase, PSI-2 80.93
1aba_A87 Glutaredoxin; electron transport; HET: MES; 1.45A 80.32
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} Back     alignment and structure
Probab=100.00  E-value=7.1e-35  Score=239.52  Aligned_cols=156  Identities=17%  Similarity=0.349  Sum_probs=132.9

Q ss_pred             CCCCCcCCCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHH
Q 042757          105 VTGPIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPA  184 (271)
Q Consensus       105 ~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~  184 (271)
                      ++.++  |+|+|+|++|+++++++++|||+||+|||||||++|+.+++.|.++++.+++++ .+|++|+||+||++|+++
T Consensus         8 ~~~~~--PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~-~~v~~v~isvDp~~Dtp~   84 (170)
T 4hde_A            8 LNWDL--ETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEK-LDVQFVSFSVDPDLDKPE   84 (170)
T ss_dssp             CCBCC--CCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTT-CCCEEEEEESCTTTCCHH
T ss_pred             CCCcC--CCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhccc-ccceeEeeecCcccccHH
Confidence            55565  999999999999999999999999999999999889999999999999998764 589999999999999999


Q ss_pred             HHHHHHHHcCC---ceeeecCC-HHHHHHHHHH-cCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecC--CCCHHH
Q 042757          185 HLRAYLKEFNS---RIVGLTGP-VGAIRQMAQE-YRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGV--EYTAEE  257 (271)
Q Consensus       185 ~l~~~~~~~~~---~~~~l~~~-~~~~~~~~~~-~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~--~~~~~~  257 (271)
                      .+++|+++|+.   .|.+|++. .+.+..+++. |++.+.    ....|.+.|++.+||||++|+|+..|.+  ....++
T Consensus        85 ~l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~----~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~  160 (170)
T 4hde_A           85 NLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVD----KPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYED  160 (170)
T ss_dssp             HHHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCB----CCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHHH
T ss_pred             HHHHHHHHcCCCCCCceecCcccHHHHHHHHHhccccccc----CCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHHH
Confidence            99999999874   68889884 4555555543 555432    2346889999999999999999999854  466788


Q ss_pred             HHHHHHHHhh
Q 042757          258 LAEEISKEMK  267 (271)
Q Consensus       258 l~~~i~~lL~  267 (271)
                      +.++|+.||+
T Consensus       161 l~~~ik~Lle  170 (170)
T 4hde_A          161 IIRDMKRLAE  170 (170)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999874
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} Back     alignment and structure
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A Back     alignment and structure
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A Back     alignment and structure
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A Back     alignment and structure
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} Back     alignment and structure
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A Back     alignment and structure
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A Back     alignment and structure
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A Back     alignment and structure
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A Back     alignment and structure
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A Back     alignment and structure
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A Back     alignment and structure
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} Back     alignment and structure
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} Back     alignment and structure
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} Back     alignment and structure
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} Back     alignment and structure
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A Back     alignment and structure
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Back     alignment and structure
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Back     alignment and structure
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} Back     alignment and structure
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} Back     alignment and structure
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} Back     alignment and structure
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A Back     alignment and structure
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Back     alignment and structure
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} Back     alignment and structure
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A Back     alignment and structure
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Back     alignment and structure
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 Back     alignment and structure
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Back     alignment and structure
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Back     alignment and structure
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Back     alignment and structure
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 Back     alignment and structure
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Back     alignment and structure
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Back     alignment and structure
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Back     alignment and structure
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} Back     alignment and structure
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A Back     alignment and structure
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 Back     alignment and structure
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A Back     alignment and structure
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} Back     alignment and structure
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} Back     alignment and structure
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Back     alignment and structure
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A Back     alignment and structure
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Back     alignment and structure
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Back     alignment and structure
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} Back     alignment and structure
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 Back     alignment and structure
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 Back     alignment and structure
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 Back     alignment and structure
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Back     alignment and structure
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 Back     alignment and structure
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} Back     alignment and structure
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Back     alignment and structure
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A Back     alignment and structure
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A Back     alignment and structure
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Back     alignment and structure
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Back     alignment and structure
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Back     alignment and structure
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Back     alignment and structure
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Back     alignment and structure
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Back     alignment and structure
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Back     alignment and structure
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A Back     alignment and structure
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 Back     alignment and structure
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} Back     alignment and structure
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 Back     alignment and structure
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A Back     alignment and structure
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D Back     alignment and structure
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Back     alignment and structure
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Back     alignment and structure
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 Back     alignment and structure
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 Back     alignment and structure
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A Back     alignment and structure
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C Back     alignment and structure
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} Back     alignment and structure
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 Back     alignment and structure
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 Back     alignment and structure
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A Back     alignment and structure
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Back     alignment and structure
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Back     alignment and structure
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 Back     alignment and structure
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Back     alignment and structure
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A Back     alignment and structure
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Back     alignment and structure
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} Back     alignment and structure
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A Back     alignment and structure
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} Back     alignment and structure
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Back     alignment and structure
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Back     alignment and structure
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} Back     alignment and structure
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A Back     alignment and structure
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 Back     alignment and structure
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima} Back     alignment and structure
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Back     alignment and structure
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A Back     alignment and structure
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Back     alignment and structure
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Back     alignment and structure
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia} Back     alignment and structure
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana} Back     alignment and structure
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10 Back     alignment and structure
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Back     alignment and structure
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Back     alignment and structure
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Back     alignment and structure
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Back     alignment and structure
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Back     alignment and structure
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Back     alignment and structure
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Back     alignment and structure
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Back     alignment and structure
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 Back     alignment and structure
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Back     alignment and structure
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Back     alignment and structure
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Back     alignment and structure
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Back     alignment and structure
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Back     alignment and structure
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} Back     alignment and structure
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Back     alignment and structure
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Back     alignment and structure
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A Back     alignment and structure
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Back     alignment and structure
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A Back     alignment and structure
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Back     alignment and structure
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Back     alignment and structure
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Back     alignment and structure
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Back     alignment and structure
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Back     alignment and structure
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Back     alignment and structure
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Back     alignment and structure
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Back     alignment and structure
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Back     alignment and structure
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Back     alignment and structure
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Back     alignment and structure
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Back     alignment and structure
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 Back     alignment and structure
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Back     alignment and structure
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Back     alignment and structure
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Back     alignment and structure
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Back     alignment and structure
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Back     alignment and structure
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Back     alignment and structure
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Back     alignment and structure
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Back     alignment and structure
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Back     alignment and structure
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Back     alignment and structure
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Back     alignment and structure
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Back     alignment and structure
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Back     alignment and structure
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Back     alignment and structure
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A Back     alignment and structure
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Back     alignment and structure
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Back     alignment and structure
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Back     alignment and structure
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Back     alignment and structure
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 Back     alignment and structure
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Back     alignment and structure
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Back     alignment and structure
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Back     alignment and structure
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Back     alignment and structure
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Back     alignment and structure
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Back     alignment and structure
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Back     alignment and structure
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Back     alignment and structure
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A Back     alignment and structure
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Back     alignment and structure
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} Back     alignment and structure
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Back     alignment and structure
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} Back     alignment and structure
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Back     alignment and structure
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Back     alignment and structure
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Back     alignment and structure
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Back     alignment and structure
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Back     alignment and structure
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Back     alignment and structure
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Back     alignment and structure
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Back     alignment and structure
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A Back     alignment and structure
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Back     alignment and structure
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A Back     alignment and structure
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} Back     alignment and structure
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} Back     alignment and structure
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Back     alignment and structure
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Back     alignment and structure
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} Back     alignment and structure
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Back     alignment and structure
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Back     alignment and structure
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Back     alignment and structure
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Back     alignment and structure
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Back     alignment and structure
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 Back     alignment and structure
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Back     alignment and structure
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A Back     alignment and structure
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Back     alignment and structure
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} Back     alignment and structure
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Back     alignment and structure
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Back     alignment and structure
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A Back     alignment and structure
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Back     alignment and structure
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} Back     alignment and structure
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Back     alignment and structure
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Back     alignment and structure
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Back     alignment and structure
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Back     alignment and structure
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Back     alignment and structure
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} Back     alignment and structure
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 Back     alignment and structure
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A Back     alignment and structure
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A Back     alignment and structure
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* Back     alignment and structure
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A Back     alignment and structure
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A Back     alignment and structure
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Back     alignment and structure
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A Back     alignment and structure
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 Back     alignment and structure
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} Back     alignment and structure
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Back     alignment and structure
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A Back     alignment and structure
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 Back     alignment and structure
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A Back     alignment and structure
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} Back     alignment and structure
>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A Back     alignment and structure
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Back     alignment and structure
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 Back     alignment and structure
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A Back     alignment and structure
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Back     alignment and structure
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} Back     alignment and structure
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Back     alignment and structure
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0 Back     alignment and structure
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Back     alignment and structure
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} Back     alignment and structure
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0 Back     alignment and structure
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A Back     alignment and structure
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} Back     alignment and structure
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} Back     alignment and structure
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A Back     alignment and structure
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A Back     alignment and structure
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A* Back     alignment and structure
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A Back     alignment and structure
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} Back     alignment and structure
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 Back     alignment and structure
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B Back     alignment and structure
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 Back     alignment and structure
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A Back     alignment and structure
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* Back     alignment and structure
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 Back     alignment and structure
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus} Back     alignment and structure
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} Back     alignment and structure
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} Back     alignment and structure
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* Back     alignment and structure
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A Back     alignment and structure
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* Back     alignment and structure
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* Back     alignment and structure
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0 Back     alignment and structure
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* Back     alignment and structure
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea} Back     alignment and structure
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} Back     alignment and structure
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* Back     alignment and structure
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12 Back     alignment and structure
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} Back     alignment and structure
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} Back     alignment and structure
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 Back     alignment and structure
>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19 Back     alignment and structure
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus} Back     alignment and structure
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* Back     alignment and structure
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12 Back     alignment and structure
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0 Back     alignment and structure
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A Back     alignment and structure
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0 Back     alignment and structure
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0 Back     alignment and structure
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans} Back     alignment and structure
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 271
d1wp0a1160 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco 2e-25
d2b7ka1169 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco 9e-23
d1xzoa1172 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 3e-12
>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} Length = 160 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.7 bits (239), Expect = 2e-25
 Identities = 58/159 (36%), Positives = 94/159 (59%), Gaps = 2/159 (1%)

Query: 112 GPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILP 171
           GPF+L        T+ ++LG W+L+YFG+T  PDV PE+++ M + +D +DS   L  L 
Sbjct: 1   GPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLT 60

Query: 172 IFV-TIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEE-GDDYL 229
               +IDP+RDT   +  Y+KEF+ ++VGLTG    + Q+A+ YRV++    ++  +DY+
Sbjct: 61  PLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYI 120

Query: 230 VESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMKK 268
           V+ +  MYL+ P  E +  FG      E+A  I+  M+ 
Sbjct: 121 VDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRP 159
>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Length = 169 Back     information, alignment and structure
>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} Length = 172 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query271
d1wp0a1160 Thioredoxin-like protein Sco1 (YpmQ), soluble doma 99.97
d1xzoa1172 Thioredoxin-like protein Sco1 (YpmQ), soluble doma 99.97
d2b7ka1169 Thioredoxin-like protein Sco1 (YpmQ), soluble doma 99.96
d1jfua_176 Membrane-anchored thioredoxin-like protein TlpA, s 99.92
d1lu4a_134 Soluble secreted antigen MPT53 {Mycobacterium tube 99.92
d2cvba1187 Probable thiol-disulfide isomerase/thioredoxin TTH 99.92
d1st9a_137 Thiol-disulfide oxidoreductase ResA {Bacillus subt 99.92
d1zzoa1134 Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI 99.91
d2cx4a1160 Bacterioferritin comigratory protein {Archaeon Aer 99.9
d2b5xa1143 thiol:disulfide oxidoreductase YkuV {Bacillus subt 99.89
d1knga_144 Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr 99.89
d1xvwa1153 Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri 99.89
d1z5ye1136 Thioredoxin-like protein CcmG (CycY, DsbE) {Escher 99.88
d1we0a1166 Alkyl hydroperoxide reductase AhpC {Amphibacillus 99.88
d2bmxa1169 Alkyl hydroperoxide reductase AhpC {Mycobacterium 99.87
d1o73a_144 Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 99.87
d2fy6a1143 Peptide methionine sulfoxide reductase MsrA/MsrB, 99.86
d1e2ya_167 Tryparedoxin peroxidase (thioredoxin peroxidase ho 99.86
d1uula_194 Tryparedoxin peroxidase (thioredoxin peroxidase ho 99.86
d1zyea1158 Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ 99.86
d1i5ga_144 Tryparedoxin II {Crithidia fasciculata [TaxId: 565 99.85
d1qxha_164 Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 99.85
d1xvqa_166 Thiol peroxidase Tpx {Mycobacterium tuberculosis [ 99.84
d1q98a_164 Thiol peroxidase Tpx {Haemophilus influenzae [TaxI 99.84
d1zofa1170 Thioredoxin reductase TsaA {Helicobacter pylori [T 99.84
d1o8xa_144 Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 99.83
d1psqa_163 Probable thiol peroxidase PsaD {Streptococcus pneu 99.83
d2a4va1156 Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c 99.82
d1n8ja_186 Alkyl hydroperoxide reductase AhpC {Salmonella typ 99.82
d2f8aa1184 Glutathione peroxidase {Human (Homo sapiens) [TaxI 99.81
d1qmva_197 Thioredoxin peroxidase 2 (thioredoxin peroxidase B 99.81
d2zcta1237 Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} 99.8
d2h01a1170 Thioredoxin peroxidase 2 (thioredoxin peroxidase B 99.78
d1prxa_220 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 99.75
d1xcca_219 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax 99.74
d1a8la2107 Protein disulfide isomerase, PDI {Archaeon Pyrococ 99.35
d1dbya_107 Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 99.35
d1xwaa_111 Thioredoxin {Fruit fly (Drosophila melanogaster) [ 99.34
d1thxa_108 Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} 99.33
d1nw2a_105 Thioredoxin {Alicyclobacillus acidocaldarius, form 99.32
d1tp9a1162 Plant peroxiredoxin {Western balsam poplar(Populus 99.29
d2fwha1117 Thiol:disulfide interchange protein DsbD, C-termin 99.29
d2trxa_108 Thioredoxin {Escherichia coli [TaxId: 562]} 99.29
d1hd2a_161 Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 99.29
d1fb6a_104 Thioredoxin {Spinach (Spinacia oleracea), thioredo 99.28
d1r26a_113 Thioredoxin {Trypanosoma brucei [TaxId: 5691]} 99.25
d1xfla_114 Thioredoxin {Thale cress (Arabidopsis thaliana) [T 99.24
d2ifqa1105 Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} 99.23
d1gh2a_107 Thioredoxin-like protein, N-terminal domain {Human 99.2
d1nm3a2163 N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus 99.19
d1ep7a_112 Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 99.18
d1ti3a_113 Thioredoxin {European aspen (Populus tremula), thi 99.15
d2es7a1119 Hydrogenase-1 operon protein HyaE {Salmonella typh 99.15
d1f9ma_112 Thioredoxin {Spinach (Spinacia oleracea), thioredo 99.1
d1z6na1166 Hypothetical protein PA1234 {Pseudomonas aeruginos 99.08
d2hfda1132 Hydrogenase-1 operon protein HyaE {Escherichia col 99.07
d1fo5a_85 MJ0307, thioredoxin/glutaredoxin-like protein {Arc 99.06
d1zmaa1115 Bacterocin transport accessory protein Bta {Strept 99.04
d1syra_103 Thioredoxin {Malarial parasite (Plasmodium falcipa 99.0
d1qgva_137 spliceosomal protein U5-15Kd {Human (Homo sapiens) 98.92
d1nhoa_85 MTH807, thioredoxin/glutaredoxin-like protein {Arc 98.88
d1hyua496 Alkyl hydroperoxide reductase subunit F (AhpF), N- 98.86
d1woua_119 Putative 42-9-9 protein (thioredoxin containing pr 98.85
d2dlxa1147 UBX domain-containing protein 7 {Human (Homo sapie 98.85
d1sena_135 Thioredoxin-like protein p19, TLP19 {Human (Homo s 98.81
d1xiya1179 1-Cys peroxiredoxin {Malaria parasite (Plasmodium 98.75
d2b5ea4119 Protein disulfide isomerase, PDI {Baker's yeast (S 98.74
d1meka_120 Protein disulfide isomerase, PDI {Human (Homo sapi 98.69
d2djja1116 Protein disulfide isomerase, PDI {Fungi (Humicola 98.4
d2b5ea1140 Protein disulfide isomerase, PDI {Baker's yeast (S 98.39
d2c0ga2122 Windbeutel, N-terminal domain {Fruit fly (Drosophi 98.39
d1a8ya1124 Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax 98.2
d1wjka_100 Thioredoxin-like structure containing protein C330 97.95
d2trcp_217 Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} 97.82
d1eeja1156 Disulfide bond isomerase, DsbC, C-terminal domain 97.55
d1v58a1169 Thiol:disulfide interchange protein DsbG, C-termin 97.04
d1beda_181 Disulfide-bond formation facilitator (DsbA) {Vibri 96.92
d1t3ba1150 Disulfide bond isomerase, DsbC, C-terminal domain 96.7
d1g7ea_122 Endoplasmic reticulum protein ERP29, N-terminal do 96.68
d1z6ma1172 Hypothetical protein EF0770 {Enterococcus faecalis 96.5
d1fvka_188 Disulfide-bond formation facilitator (DsbA) {Esche 94.04
d1a8la1119 Protein disulfide isomerase, PDI {Archaeon Pyrococ 91.37
d1iloa_77 MTH985, a thioredoxin {Archaeon Methanobacterium t 89.76
d1r7ha_74 Glutaredoxin-like NRDH-redoxin {Corynebacterium am 89.56
>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.9e-31  Score=211.31  Aligned_cols=158  Identities=37%  Similarity=0.768  Sum_probs=145.1

Q ss_pred             CCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccC-CCeeEEEEEeCCCCCCHHHHHHHH
Q 042757          112 GPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKN-LKILPIFVTIDPQRDTPAHLRAYL  190 (271)
Q Consensus       112 p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~-~~v~~v~IsvDp~~Dt~~~l~~~~  190 (271)
                      +||+|+|++|+++++++|+|||+||+||+||||++|+.+++.|.++++.++..+. ..+.++.++++|.+|+++.+.++.
T Consensus         1 gdF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1wp0a1           1 GPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYV   80 (160)
T ss_dssp             CCCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHH
T ss_pred             CCeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999999887653 567888999999999999999999


Q ss_pred             HHcCCceeeecCCHHHHHHHHHHcCceeeeec-cCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHhhhh
Q 042757          191 KEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVE-EEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMKKA  269 (271)
Q Consensus       191 ~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~-~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL~~~  269 (271)
                      ..++.+|..+++.......+.+.|++...+.. ..+.+|.++|++.+|||||+|+|+.+|+...++++++++|+++|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk~~  160 (160)
T d1wp0a1          81 KEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPY  160 (160)
T ss_dssp             HTTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred             hhcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999999998877654 34467999999999999999999999999999999999999999875
>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} Back     information, alignment and structure
>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Back     information, alignment and structure
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Back     information, alignment and structure
>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} Back     information, alignment and structure
>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Back     information, alignment and structure
>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Back     information, alignment and structure
>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} Back     information, alignment and structure
>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} Back     information, alignment and structure
>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Back     information, alignment and structure
>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Back     information, alignment and structure
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]} Back     information, alignment and structure
>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Back     information, alignment and structure
>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Back     information, alignment and structure
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Back     information, alignment and structure
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Back     information, alignment and structure
>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Back     information, alignment and structure
>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} Back     information, alignment and structure