Citrus Sinensis ID: 042761

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
QWRQEQKLSITRKPSYLNKAKKGLIQLEEETIKNDQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSGLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQADQVIDPVELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVTPSLFISTT
cHHHHHHHccccccccHHHHHcccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
ccHHcccccccccccHHHHcccccEEEcHHHcccccccccEEHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEccccccHcccccccccccccEEEccEEEEcccEEEEcc
qwrqeqklsitrkpsyLNKAKKGLIQLEEETikndqekgtIAGAVALIIGTSigsgilalpqkaspagifpsslsLIVCWGFLLIEALILIEINVSLrrgkrkgeeeneFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLnipesvsgfLFTTVFTLLISiggtratdQFNQWLTASMIGLLVAIEVIAVVVGgwsgldgsgnwgkvpatIPVIIFSLVYHDLAPVLCaylggdlprLRASVLLGSLIPLLSLLVWDAISLglsaqadqvidpVELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKslswnssptktskesteffglrnwwgrnkISFTAMAMVVtpslfistt
qwrqeqklsitrkpsylnkAKKGLIQLEEetikndqekgTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVslrrgkrkgeeenefeviSIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSGLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQADQVIDPVELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKslswnssptktskesteffglrnwWGRNKISFTAMAMVVTPSLFISTT
QWRQEQKLSITRKPSYLNKAKKGLIQLEEETIKNDQEKGTIAGAValiigtsigsgilalPQKASPAGIFPSSLSLIVCWGFlliealilieiNVSLrrgkrkgeeeNEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMigllvaieviavvvggWSGLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRAsvllgslipllsllVWDAISLGLSAQADQVIDPVELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLSWNssptktskesteFFGLRNWWGRNKISFTAMAMVVTPSLFISTT
*************************************KGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRR*********EFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSGLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQADQVIDPVELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSL**************EFFGLRNWWGRNKISFTAMAMVVTPSLFI***
******************************************GAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSGLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQADQVIDPVELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVTPSLFISTT
********SITRKPSYLNKAKKGLIQLEEETIKNDQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRR**********FEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSGLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQADQVIDPVELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSL**************EFFGLRNWWGRNKISFTAMAMVVTPSLFISTT
*****QKLSITRKPSYLNKAKKGLIQLEEETIKNDQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRG***********VISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSGLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQADQVIDPVELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVTPSLFIST*
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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QWRQEQKLSITRKPSYLNKAKKGLIQLEEETIKNDQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSGLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQADQVIDPVELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVTPSLFISTT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query383 2.2.26 [Sep-21-2011]
P0AAD5403 Tyrosine-specific transpo yes no 0.744 0.707 0.266 3e-13
P0AAD4403 Tyrosine-specific transpo N/A no 0.744 0.707 0.266 3e-13
P44727400 Tyrosine-specific transpo yes no 0.754 0.722 0.281 2e-12
P44614418 Tryptophan-specific trans no no 0.741 0.679 0.219 4e-08
Q8XB33415 Low affinity tryptophan p N/A no 0.751 0.693 0.223 5e-07
P23173415 Low affinity tryptophan p N/A no 0.744 0.686 0.224 5e-07
P44747406 Tyrosine-specific transpo no no 0.738 0.697 0.248 6e-07
P0AAD3414 Tryptophan-specific trans no no 0.650 0.601 0.235 4e-06
P0AAD2414 Tryptophan-specific trans N/A no 0.650 0.601 0.235 4e-06
>sp|P0AAD5|TYRP_SHIFL Tyrosine-specific transport protein OS=Shigella flexneri GN=tyrP PE=3 SV=1 Back     alignment and function desciption
 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 150/315 (47%), Gaps = 30/315 (9%)

Query: 38  KGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSL 97
           K    G+V ++ GT+IG+G+LA+P  A+  G   + + LI  W  +   AL+L+E+   +
Sbjct: 2   KNRTLGSVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV 61

Query: 98  RRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEIL--- 154
                 G            T+A+  LG +G  L     +FL Y    AY S +GE+L   
Sbjct: 62  PADTGLG------------TLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASS 109

Query: 155 ---YHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWL-TASMIGLLVAIEVIAVVV 210
              +  +++  +    LFT V   ++ +G T   D FN++L +A +I L+V + ++   +
Sbjct: 110 ISDWTGISMSATAGVLLFTFVAGGVVCVG-TSLVDLFNRFLFSAKIIFLVVMLVLLLPHI 168

Query: 211 GGWSGLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLS 270
              + L      G   + IPVI  S  +H   P + +Y+ G++ +LR   ++GS IPL++
Sbjct: 169 HKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMDGNIRKLRWVFIIGSAIPLVA 228

Query: 271 LLVWDAISL---------GLSAQADQVIDPVELLMRVRWS-GVSVMVEAFSLMAVGTSLI 320
            + W   +L         GL A    +   ++ L  +  S  V + V  F+ +A+ TS +
Sbjct: 229 YIFWQVATLGSIDSTTFMGLLANHAGLNGLLQALREMVASPHVELAVHLFADLALATSFL 288

Query: 321 GTLLGFSEFFKEQLK 335
           G  LG  ++  +  +
Sbjct: 289 GVALGLFDYLADLFQ 303
Involved in transporting tyrosine across the cytoplasmic membrane.
Shigella flexneri (taxid: 623)
>sp|P0AAD4|TYRP_ECOLI Tyrosine-specific transport protein OS=Escherichia coli (strain K12) GN=tyrP PE=1 SV=1 Back     alignment and function description
>sp|P44727|TYRPA_HAEIN Tyrosine-specific transport protein 1 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tyrP-A PE=3 SV=1 Back     alignment and function description
>sp|P44614|MTR_HAEIN Tryptophan-specific transport protein OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=mtr PE=3 SV=1 Back     alignment and function description
>sp|Q8XB33|TNAB_ECO57 Low affinity tryptophan permease OS=Escherichia coli O157:H7 GN=tnaB PE=3 SV=1 Back     alignment and function description
>sp|P23173|TNAB_ECOLI Low affinity tryptophan permease OS=Escherichia coli (strain K12) GN=tnaB PE=1 SV=1 Back     alignment and function description
>sp|P44747|TYRPB_HAEIN Tyrosine-specific transport protein 2 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tyrP-B PE=3 SV=1 Back     alignment and function description
>sp|P0AAD3|MTR_SHIFL Tryptophan-specific transport protein OS=Shigella flexneri GN=mtr PE=3 SV=1 Back     alignment and function description
>sp|P0AAD2|MTR_ECOLI Tryptophan-specific transport protein OS=Escherichia coli (strain K12) GN=mtr PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
225449064 509 PREDICTED: tyrosine-specific transport p 0.992 0.746 0.734 1e-160
296086026 510 unnamed protein product [Vitis vinifera] 0.992 0.745 0.732 1e-160
224109760 501 predicted protein [Populus trichocarpa] 0.984 0.752 0.735 1e-156
356561345448 PREDICTED: tyrosine-specific transport p 0.960 0.821 0.654 1e-139
255577395370 Tyrosine-specific transport protein, put 0.825 0.854 0.755 1e-128
449505717469 PREDICTED: tyrosine-specific transport p 0.971 0.793 0.644 1e-125
449464408461 PREDICTED: tyrosine-specific transport p 0.971 0.806 0.644 1e-125
242041543 542 hypothetical protein SORBIDRAFT_01g04082 0.900 0.636 0.522 2e-94
115451969 544 Os03g0254200 [Oryza sativa Japonica Grou 0.911 0.641 0.508 2e-89
222624582 544 hypothetical protein OsJ_10171 [Oryza sa 0.911 0.641 0.502 8e-88
>gi|225449064|ref|XP_002274266.1| PREDICTED: tyrosine-specific transport protein-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 280/381 (73%), Positives = 330/381 (86%), Gaps = 1/381 (0%)

Query: 3   RQEQKLSITRKPSYLNKAKKGLIQLEEETIKNDQEKGTIAGAVALIIGTSIGSGILALPQ 62
           ++EQ+  +T KPS   KA + + +L +E IK  ++KGTI+GAVALIIGTSIGSGILALPQ
Sbjct: 54  QKEQRPWLTWKPSA-TKANRSVAELRKEPIKESKKKGTISGAVALIIGTSIGSGILALPQ 112

Query: 63  KASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQET 122
           KA+PAG+ PSS+S+IVCWGFLLIEAL+L+EINV LRR K K EEENE ++ISIRTMAQET
Sbjct: 113 KAAPAGLVPSSISVIVCWGFLLIEALLLVEINVGLRRKKGKIEEENELDIISIRTMAQET 172

Query: 123 LGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGT 182
           LG+WGG LAT  YVFLGYTSM+ Y SKSGEIL+HL+N P S+SGF FT +FT+LISIGGT
Sbjct: 173 LGEWGGILATATYVFLGYTSMVVYSSKSGEILFHLINFPASISGFFFTALFTILISIGGT 232

Query: 183 RATDQFNQWLTASMIGLLVAIEVIAVVVGGWSGLDGSGNWGKVPATIPVIIFSLVYHDLA 242
           RATDQ NQWLTASM+ LL+AIEV+ VV+GGWSGL+GSG+WGKVPATIPVIIFSLVYHDLA
Sbjct: 233 RATDQVNQWLTASMLCLLLAIEVLGVVLGGWSGLEGSGDWGKVPATIPVIIFSLVYHDLA 292

Query: 243 PVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQADQVIDPVELLMRVRWSG 302
           PV+CAYLGGDL R+RASVLLGSL+PL++LL+WDAI+LGLS+QADQ +DPVELLM V WSG
Sbjct: 293 PVICAYLGGDLTRIRASVLLGSLVPLVALLLWDAIALGLSSQADQAVDPVELLMSVNWSG 352

Query: 303 VSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWGR 362
           VS MV+AFSL+A+GTSLIGTLL FS+FFKEQL +LSWNS  T+   +  E FGLR WWGR
Sbjct: 353 VSFMVDAFSLLAIGTSLIGTLLSFSQFFKEQLDNLSWNSPSTQILPKPGELFGLRKWWGR 412

Query: 363 NKISFTAMAMVVTPSLFISTT 383
           NK SFTAMAMVV P+L +S T
Sbjct: 413 NKSSFTAMAMVVAPTLLVSAT 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296086026|emb|CBI31467.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224109760|ref|XP_002315302.1| predicted protein [Populus trichocarpa] gi|222864342|gb|EEF01473.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356561345|ref|XP_003548943.1| PREDICTED: tyrosine-specific transport protein-like [Glycine max] Back     alignment and taxonomy information
>gi|255577395|ref|XP_002529577.1| Tyrosine-specific transport protein, putative [Ricinus communis] gi|223530953|gb|EEF32811.1| Tyrosine-specific transport protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449505717|ref|XP_004162549.1| PREDICTED: tyrosine-specific transport protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449464408|ref|XP_004149921.1| PREDICTED: tyrosine-specific transport protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|242041543|ref|XP_002468166.1| hypothetical protein SORBIDRAFT_01g040820 [Sorghum bicolor] gi|241922020|gb|EER95164.1| hypothetical protein SORBIDRAFT_01g040820 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|115451969|ref|NP_001049585.1| Os03g0254200 [Oryza sativa Japonica Group] gi|108707221|gb|ABF95016.1| Tryptophan/tyrosine permease family protein, expressed [Oryza sativa Japonica Group] gi|113548056|dbj|BAF11499.1| Os03g0254200 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|222624582|gb|EEE58714.1| hypothetical protein OsJ_10171 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
TAIR|locus:2180801505 AT5G19500 "AT5G19500" [Arabido 0.772 0.586 0.297 4.7e-32
UNIPROTKB|Q9KLH2400 VC_A0772 "Tyrosine-specific tr 0.577 0.552 0.270 4.4e-12
TIGR_CMR|VC_A0772400 VC_A0772 "tyrosine-specific tr 0.577 0.552 0.270 4.4e-12
TAIR|locus:2051134436 AT2G33260 "AT2G33260" [Arabido 0.785 0.690 0.233 1.6e-09
TIGR_CMR|CBU_1539426 CBU_1539 "tryptophan/tyrosine 0.582 0.523 0.242 1.1e-06
TIGR_CMR|SO_2065395 SO_2065 "tyrosine-specific tra 0.577 0.559 0.229 2.2e-06
UNIPROTKB|Q9KN06411 VC_A0160 "Tryptophan-specific 0.569 0.530 0.242 2.3e-06
TIGR_CMR|VC_A0160411 VC_A0160 "tryptophan-specific 0.569 0.530 0.242 2.3e-06
TIGR_CMR|SO_4601418 SO_4601 "tryptophan-specific t 0.360 0.330 0.277 0.00015
UNIPROTKB|P0AAD4403 tyrP [Escherichia coli K-12 (t 0.561 0.533 0.240 0.00024
TAIR|locus:2180801 AT5G19500 "AT5G19500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 94/316 (29%), Positives = 142/316 (44%)

Query:    27 LEEETIKNDQEKGTIAGAVXXXXXXXXXXXXXXXPQKASPAGIFPSSLSLIVCWGFXXXX 86
             L + T+K  +E G+++ A+               P     +G   S+++ I+CW F    
Sbjct:    98 LNQSTLK--RESGSLSSAIFLVAGTTVGAGILAIPAVTQESGFLASAVACILCWAFMVVT 155

Query:    87 XXXXXXXNVSLXXXXXXXXXXNEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAY 146
                    NV+                +S+ +MA+ TLG  G  + +  Y+ + YT ++AY
Sbjct:   156 GLLVAEVNVNTMSELGSGG-------VSLVSMAKRTLGSVGVQVVSWSYLLIHYTLLVAY 208

Query:   147 CSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMXXXXXXXXXX 206
              ++S  IL + L IP   S  LF+ +F  L   G  R     N  L   +          
Sbjct:   209 IARSSGILTNFLGIPIWESATLFSLIFGGLCFFGSQRFIGAANGVLVFGVIASFAALVAV 268

Query:   207 XXXXXXWSGLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRAXXXXXXXX 266
                   W  L    N+  VP ++P+I  S VY ++ PVLC  L GDLPR+R         
Sbjct:   269 ASGDLHWEALL-KANFEAVPMSVPIIALSFVYQNVVPVLCTDLEGDLPRVRTAIVLGTAI 327

Query:   267 XXXXXXVWDAISLG-----LSAQADQVIDPVELLMRVRWSGVSV--MVEAFSLMAVGTSL 319
                   VWDA+ LG          ++++DP   L ++R S V+V   VEAFSL A+ TS 
Sbjct:   328 PLGLFLVWDAVILGSFPVDTGVAVEKMVDP---LQQLRSSSVTVGPFVEAFSLFAIATSY 384

Query:   320 IGTLLGFSEFFKEQLK 335
             IG +LG S+FF + LK
Sbjct:   385 IGFVLGLSDFFSDLLK 400
GO:0005275 "amine transmembrane transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0009507 "chloroplast" evidence=IDA
GO:0009706 "chloroplast inner membrane" evidence=IDA
GO:0006863 "purine nucleobase transport" evidence=RCA
UNIPROTKB|Q9KLH2 VC_A0772 "Tyrosine-specific transport protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A0772 VC_A0772 "tyrosine-specific transport protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TAIR|locus:2051134 AT2G33260 "AT2G33260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1539 CBU_1539 "tryptophan/tyrosine permease family protein" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2065 SO_2065 "tyrosine-specific transport protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KN06 VC_A0160 "Tryptophan-specific transport protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A0160 VC_A0160 "tryptophan-specific transport protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4601 SO_4601 "tryptophan-specific transport protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P0AAD4 tyrP [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_X002021
hypothetical protein (501 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 3e-37
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 9e-33
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 1e-29
PRK15132403 PRK15132, PRK15132, tyrosine transporter TyrP; Pro 5e-20
PRK10483414 PRK10483, PRK10483, tryptophan permease; Provision 4e-15
PRK09664415 PRK09664, PRK09664, tryptophan permease TnaB; Prov 7e-09
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 2e-05
COG0531 466 COG0531, PotE, Amino acid transporters [Amino acid 4e-05
TIGR00814397 TIGR00814, stp, serine transporter 0.004
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information 
 Score =  138 bits (349), Expect = 3e-37
 Identities = 94/317 (29%), Positives = 149/317 (47%), Gaps = 42/317 (13%)

Query: 43  GAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKR 102
           G V +I GT+IG+G+LALP   + AG  PS L LI+ W  +L   L+L+E+ +    G  
Sbjct: 7   GGVLIIAGTAIGAGMLALPVATAGAGFIPSLLLLILSWFLMLASGLLLLEVYLWYPEG-- 64

Query: 103 KGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN--- 159
                      S  T+A++ LG  G  +A + Y FL Y    AY S  G IL  ++    
Sbjct: 65  ----------ASFNTLAKDLLGKKGNIIAGLVYAFLLYILTYAYISGGGSILSRVIPEMF 114

Query: 160 -IPES--VSGFLFTTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSGL 216
            IP S   +  +FT +F   +  G T+A D+ N+ L   + G ++A     V  G    +
Sbjct: 115 GIPWSARAAPLIFTLLFGPFVWAG-TKAVDRINRVL---IFGKIIAF--ALVFSGLLPKI 168

Query: 217 DGS--------GNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPL 268
            G           W  +   +PV   S  +H   P L  Y GG++ ++R ++L+G+ IPL
Sbjct: 169 KGDLLLDALDTSYWPYILMALPVFFTSFGFHGNVPSLYKYYGGNVKKVRKAILIGTAIPL 228

Query: 269 LSLLVWDAISLGLSAQAD--QVIDP-------VELLMRVRWSG-VSVMVEAFSLMAVGTS 318
           +  ++W   +LG   + +   +I         VE L+ V  S    + +E FS  A+ TS
Sbjct: 229 VLYILWQLATLGNLPREEFAPIIAKGGNLDTLVEALLGVLKSPSFELALELFSFFALATS 288

Query: 319 LIGTLLGFSEFFKEQLK 335
            +G  LG  ++  +  K
Sbjct: 289 FLGVALGLFDYLADLFK 305

Length = 393
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|185086 PRK15132, PRK15132, tyrosine transporter TyrP; Provisional Back     alignment and domain information
>gnl|CDD|182492 PRK10483, PRK10483, tryptophan permease; Provisional Back     alignment and domain information
>gnl|CDD|182022 PRK09664, PRK09664, tryptophan permease TnaB; Provisional Back     alignment and domain information
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233139 TIGR00814, stp, serine transporter Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 383
PRK10483414 tryptophan permease; Provisional 100.0
PRK09664415 tryptophan permease TnaB; Provisional 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 100.0
PRK15132403 tyrosine transporter TyrP; Provisional 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PRK13629443 threonine/serine transporter TdcC; Provisional 100.0
TIGR00814397 stp serine transporter. The HAAAP family includes 99.97
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.94
KOG1303437 consensus Amino acid transporters [Amino acid tran 99.93
PRK10655438 potE putrescine transporter; Provisional 99.93
PRK10249458 phenylalanine transporter; Provisional 99.92
COG1113 462 AnsP Gamma-aminobutyrate permease and related perm 99.92
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.92
PRK11387 471 S-methylmethionine transporter; Provisional 99.92
PRK10746 461 putative transport protein YifK; Provisional 99.92
PRK15049 499 L-asparagine permease; Provisional 99.92
PRK10644 445 arginine:agmatin antiporter; Provisional 99.92
PTZ00206467 amino acid transporter; Provisional 99.92
PRK10238 456 aromatic amino acid transporter; Provisional 99.91
TIGR01773 452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.91
PRK10580 457 proY putative proline-specific permease; Provision 99.91
TIGR00905 473 2A0302 transporter, basic amino acid/polyamine ant 99.91
TIGR03810 468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.91
TIGR00909429 2A0306 amino acid transporter. 99.91
PRK11049 469 D-alanine/D-serine/glycine permease; Provisional 99.9
PRK10836 489 lysine transporter; Provisional 99.9
PRK11021410 putative transporter; Provisional 99.89
TIGR00913 478 2A0310 amino acid permease (yeast). 99.89
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.89
PRK10197 446 gamma-aminobutyrate transporter; Provisional 99.88
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.88
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.87
COG0833 541 LysP Amino acid transporters [Amino acid transport 99.87
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 99.85
TIGR00911 501 2A0308 L-type amino acid transporter. 99.85
PLN03074473 auxin influx permease; Provisional 99.85
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.84
KOG1287 479 consensus Amino acid transporters [Amino acid tran 99.83
KOG1304449 consensus Amino acid transporters [Amino acid tran 99.82
TIGR00930 953 2a30 K-Cl cotransporter. 99.81
KOG1286 554 consensus Amino acid transporters [Amino acid tran 99.79
COG0531 466 PotE Amino acid transporters [Amino acid transport 99.79
TIGR03428 475 ureacarb_perm permease, urea carboxylase system. A 99.77
COG3949349 Uncharacterized membrane protein [Function unknown 99.76
PF00324 478 AA_permease: Amino acid permease; InterPro: IPR004 99.74
PF03845320 Spore_permease: Spore germination protein; InterPr 99.73
KOG1305411 consensus Amino acid transporter protein [Amino ac 99.71
PRK15238 496 inner membrane transporter YjeM; Provisional 99.67
TIGR00907 482 2A0304 amino acid permease (GABA permease). 99.67
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.65
TIGR03813 474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.64
KOG4303524 consensus Vesicular inhibitory amino acid transpor 99.54
KOG3832319 consensus Predicted amino acid transporter [Genera 99.45
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.18
TIGR00835425 agcS amino acid carrier protein. Members of the AG 99.12
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 99.03
PRK09442483 panF sodium/panthothenate symporter; Provisional 99.0
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.86
TIGR00813407 sss transporter, SSS family. have different number 98.86
PRK09395 551 actP acetate permease; Provisional 98.76
PRK12488 549 acetate permease; Provisional 98.76
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 98.76
KOG1289 550 consensus Amino acid transporters [Amino acid tran 98.74
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 98.71
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 98.69
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.65
COG0591 493 PutP Na+/proline symporter [Amino acid transport a 98.62
PRK11017404 codB cytosine permease; Provisional 98.55
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 98.5
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.46
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 98.4
COG1457442 CodB Purine-cytosine permease and related proteins 98.4
PRK15419 502 proline:sodium symporter PutP; Provisional 98.38
PRK11375484 allantoin permease; Provisional 98.37
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.29
COG0733439 Na+-dependent transporters of the SNF family [Gene 98.27
PRK15433439 branched-chain amino acid transport system 2 carri 98.27
PRK10484 523 putative transporter; Provisional 98.24
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 98.14
PF01566358 Nramp: Natural resistance-associated macrophage pr 98.03
COG4147 529 DhlC Predicted symporter [General function predict 97.97
PRK00701439 manganese transport protein MntH; Reviewed 97.97
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.95
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 97.88
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.84
PHA02764399 hypothetical protein; Provisional 97.84
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.68
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 97.66
COG1966 575 CstA Carbon starvation protein, predicted membrane 97.57
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 97.45
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.39
PRK15015 701 carbon starvation protein A; Provisional 96.79
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 95.34
KOG1288 945 consensus Amino acid transporters [Amino acid tran 95.09
KOG1291 503 consensus Mn2+ and Fe2+ transporters of the NRAMP 94.73
PF00209 523 SNF: Sodium:neurotransmitter symporter family; Int 94.71
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.69
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 93.57
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 92.91
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 92.78
PRK09928 679 choline transport protein BetT; Provisional 91.93
PRK15433439 branched-chain amino acid transport system 2 carri 90.49
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 87.18
TIGR00842453 bcct choline/carnitine/betaine transport. properti 86.7
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 85.67
COG1292 537 BetT Choline-glycine betaine transporter [Cell env 85.26
PRK09950506 putative transporter; Provisional 84.12
KOG1289550 consensus Amino acid transporters [Amino acid tran 80.02
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.1e-42  Score=338.22  Aligned_cols=310  Identities=25%  Similarity=0.385  Sum_probs=266.1

Q ss_pred             ccCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccC
Q 042761           35 DQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVIS  114 (383)
Q Consensus        35 ~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~  114 (383)
                      ++++++..+.++++.||+||+|+|+||.+.+..|+.+++++++++|+++.+++++++|.+.+++++            .+
T Consensus         7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g------------~~   74 (414)
T PRK10483          7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIG------------SS   74 (414)
T ss_pred             ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------------CC
Confidence            467799999999999999999999999999999999999999999999999999999998877653            69


Q ss_pred             HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhh-----CCchhHHHHHHHHHHHHHHHhcchhhHHHHH
Q 042761          115 IRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLL-----NIPESVSGFLFTTVFTLLISIGGTRATDQFN  189 (383)
Q Consensus       115 ~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~-----~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~  189 (383)
                      +.+++|+++||.++.+.++++.+.+|+.++||+++.|+.+++.+     ++|.+...++|+++++.+++ .|.|.++|+|
T Consensus        75 ~~tma~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~-~gt~~vd~~n  153 (414)
T PRK10483         75 FDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVW-LSTKAVSRMT  153 (414)
T ss_pred             HHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH-hhhhHHHHHH
Confidence            99999999999999999999999999999999999999999887     46888999999999999886 6999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCC--CC-C----CCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHH
Q 042761          190 QWLTASMIGLLVAIEVIAVVVGGWS--GL-D----GSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLL  262 (383)
Q Consensus       190 ~~~~~~~i~~l~~iiv~~~~~~~~~--~~-~----~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~  262 (383)
                      +++...|++.++..+..  ..++.+  ++ +    ...+|...+.++|++++||++|+++|++.+++++|+||++|++..
T Consensus       154 ~~l~~~~i~~f~~~~~~--l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~i  231 (414)
T PRK10483        154 AIVLGAKVITFFLTFGS--LLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVY  231 (414)
T ss_pred             HHHHHHHHHHHHHHHHH--HHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHH
Confidence            99999998887765432  233332  21 1    112244688999999999999999999999998888999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCccc---------cccCHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 042761          263 GSLIPLLSLLVWDAISLGLSAQAD---------QVIDPVELLMR-VRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKE  332 (383)
Q Consensus       263 ~~~i~~~~Yi~~~~~~~g~~~~~~---------~~~~pl~~l~~-~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~  332 (383)
                      |..+++++|++|.++++|..|+++         +.+..++.+++ .+++++..+.++|+.+|+.|||+|+++|+.|+++|
T Consensus       232 Gs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D  311 (414)
T PRK10483        232 GTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLAD  311 (414)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999654         11112344443 45678899999999999999999999999999999


Q ss_pred             hhcccCCCCCCCCCCCCcccccccccccccCcchheeeeeeccccccccc
Q 042761          333 QLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVTPSLFIST  382 (383)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~pp~~~~~  382 (383)
                      .++.++.    .               .+|    ...-+++.+||+++++
T Consensus       312 ~~k~~~~----~---------------~~r----~~~~~ltflPPl~~al  338 (414)
T PRK10483        312 LFGFDDS----A---------------MGR----FKTALLTFLPPVVGGL  338 (414)
T ss_pred             HhCCCCc----c---------------ccc----eeeehhhHhhHHHHHH
Confidence            9986531    0               455    6677899999999874

>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 1e-05
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 47/305 (15%), Positives = 94/305 (30%), Gaps = 32/305 (10%)

Query: 43  GAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKR 102
               ++ G  +GSG+  LP   +  G   +    +V     L  +++  ++  S      
Sbjct: 14  PVTLMVSGAIMGSGVFLLPANLASTG-GIAIYGWLVTIIGALGLSMVYAKM--SFLDPSP 70

Query: 103 KGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPE 162
            G              A+   G + G    V Y    +   IA        L +   I +
Sbjct: 71  GG----------SYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK 120

Query: 163 S-VSGFLFTTVFTLLIS---IGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWS---- 214
                 +   V   +     I G +   +     T   +  +V I V             
Sbjct: 121 DPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMA 180

Query: 215 --GLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYL---GGDLPRLRASVLLGSLIPLL 269
              + G G +G + +T+ V ++S +  + A V    +     ++P    + + G LI  +
Sbjct: 181 AWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI---ATIGGVLIAAV 237

Query: 270 SLLVWDAISLGLSAQADQVIDP---VELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGF 326
             ++     +G+   A   +      +            +V   +      SL G  L  
Sbjct: 238 CYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLA 297

Query: 327 SEFFK 331
            +  K
Sbjct: 298 GQTAK 302

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
3l1l_A 445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.94
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.9
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 99.81
2jln_A 501 MHP1; hydantoin, transporter, membrane protein, nu 98.98
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.74
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 98.46
2a65_A 519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.66
2wsw_A509 BCCT family betaine/carnitine/choline transporter; 81.83
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.94  E-value=5.5e-25  Score=219.15  Aligned_cols=315  Identities=15%  Similarity=0.112  Sum_probs=241.2

Q ss_pred             ccCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccC
Q 042761           35 DQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVIS  114 (383)
Q Consensus        35 ~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~  114 (383)
                      ++|+.+.++++++.+|++||+|++.+|...+.+|. .+++..++++++....++.+.|+..++|+.            .+
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~------------Gg   72 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSP------------GG   72 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT------------TT
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCC------------CC
Confidence            46889999999999999999999999998888886 577888888999999999999999999874            48


Q ss_pred             HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-----CchhHHHHHHHHHHHHHHHhcchhhHHHHH
Q 042761          115 IRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-----IPESVSGFLFTTVFTLLISIGGTRATDQFN  189 (383)
Q Consensus       115 ~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-----l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~  189 (383)
                      .++++++.+||+.+++.++.+++.......++....++++..+++     .+..+..+.+.+++..++. .|+|...+++
T Consensus        73 ~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~-~g~~~~~~~~  151 (445)
T 3l1l_A           73 SYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNI-VGPKMITRVQ  151 (445)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHH
T ss_pred             chhhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHH-hchHHHHHHH
Confidence            999999999999999999999988777777788888888877664     1223344555555566675 7999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCC---CCC---CcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHHH
Q 042761          190 QWLTASMIGLLVAIEVIAVVVGGWSGLD---GSG---NWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLG  263 (383)
Q Consensus       190 ~~~~~~~i~~l~~iiv~~~~~~~~~~~~---~~~---~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~~  263 (383)
                      .+++..+++.++.+++.+....+.++..   .+.   ++.++..++...+++|.+.+..+.+.+|+|+|+|++||++..+
T Consensus       152 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~  231 (445)
T 3l1l_A          152 AVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGG  231 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHH
Confidence            9999988877666554333222222211   111   2456778888999999999999999999976668999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCccc--cccCHHHH-HhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCC
Q 042761          264 SLIPLLSLLVWDAISLGLSAQAD--QVIDPVEL-LMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLSWN  340 (383)
Q Consensus       264 ~~i~~~~Yi~~~~~~~g~~~~~~--~~~~pl~~-l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~~~~  340 (383)
                      ..++.++|++..++..+..|.++  +.++|... .....+++...++.++.+++..++.++...+..+.+..+-++..  
T Consensus       232 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~--  309 (445)
T 3l1l_A          232 VLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGL--  309 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTS--
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--
Confidence            99999999999998888888765  23456543 33344567888899999999999999999998877766544333  


Q ss_pred             CCCCCCCCCcccccccccccccCcchheeeeeecccc
Q 042761          341 SSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVTPS  377 (383)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~pp  377 (383)
                              .| +.+++   .+|+|.|..+.+++.+..
T Consensus       310 --------lP-~~~~~---~~~~~~P~~a~~~~~~~~  334 (445)
T 3l1l_A          310 --------FP-PIFAR---VNKAGTPVAGLIIVGILM  334 (445)
T ss_dssp             --------SC-GGGGC---CCTTCCCHHHHHHHHHHH
T ss_pred             --------Cc-HHHHh---cCCCCCCHHHHHHHHHHH
Confidence                    33 34555   556789988877655533
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 96.18
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.18  E-value=0.55  Score=44.38  Aligned_cols=57  Identities=23%  Similarity=0.320  Sum_probs=39.1

Q ss_pred             CCccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042761           37 EKGTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEIN   94 (383)
Q Consensus        37 ~~~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~   94 (383)
                      +-.+-.+.++-.+|..||-| +--.|+...+.|....++..++..++ .-.-.+++|.+
T Consensus         3 ~W~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l-~gvPll~lE~~   60 (509)
T d2a65a1           3 HWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLL-VGIPLMWIEWA   60 (509)
T ss_dssp             CCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHH-THHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHH-HHHHHHHHHHH
Confidence            34577788889999999999 77799998777754444444443322 33456677765