Citrus Sinensis ID: 042770

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQGN
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccccccccccEccccccccHHHHHHHHHHHHHHccccccccHHHcccEHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
DPIISVIknfqnvdpfkvttnghfqidlgldnLDFVEIVMALKEefgfeipdneaDIINTINMAVNFTASHCQGN
Flexible Loop (DISEMBL)
dpiisviknfqnvdpfkVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQGN
Low Complexity Region (SEG)
DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQGN
Disordered region (IsUnstruct)
**IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTA******
Disordered Region (DISOPRED)
DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNF*ASH****
Disordered Region (DISEMBL)
DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQGN
Disordered Region (DISPRO)
DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
O80800	126	Acyl carrier protein 2, m	yes	no	1.0	0.595	0.666	9e-23
P53665	122	Acyl carrier protein 1, m	no	no	0.946	0.581	0.549	3e-16
Q0MQC3	156	Acyl carrier protein, mit	yes	no	0.92	0.442	0.463	3e-12
O14561	156	Acyl carrier protein, mit	yes	no	0.92	0.442	0.463	3e-12
Q0MQC2	156	Acyl carrier protein, mit	N/A	no	0.92	0.442	0.463	3e-12
Q0MQC1	156	Acyl carrier protein, mit	N/A	no	0.92	0.442	0.463	3e-12
Q9CR21	156	Acyl carrier protein, mit	yes	no	0.92	0.442	0.463	3e-12
P52505	156	Acyl carrier protein, mit	yes	no	0.92	0.442	0.463	4e-12
P11943	134	Acyl carrier protein, mit	N/A	no	0.973	0.544	0.472	9e-12
P80920	77	Acyl carrier protein OS=L	N/A	no	0.786	0.766	0.542	2e-11

>sp|O80800|ACPM2_ARATH Acyl carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=1 SV=1

 Score =  105 bits (262), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 61/75 (81%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D ++SV+KNFQ VDP KVT   +FQ DLGLD+LD VE+VMAL+EEFGFEIPDNEAD I +
Sbjct: 52  DRVLSVVKNFQKVDPSKVTPKANFQNDLGLDSLDSVEVVMALEEEFGFEIPDNEADKIQS 111

Query: 61  INMAVNFTASHCQGN 75
           I++AV+F ASH Q  
Sbjct: 112 IDLAVDFIASHPQAK 126

Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity). May be involved in the synthesis of short and medium chain fatty acids. Accessory and non-catalytic subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain.
Arabidopsis thaliana (taxid: 3702)

>sp|P53665|ACPM1_ARATH Acyl carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=MTACP1 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 53/71 (74%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D ++ V+K+F  VDP KVT   HFQ DLGLD+LD VEIVMA++EEF  EIPD EAD I++
Sbjct: 48  DRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKIDS 107

Query: 61  INMAVNFTASH 71
            ++A+ +  +H
Sbjct: 108 CSLAIEYVYNH 118

Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity). May be involved in the synthesis of short and medium chain fatty acids. Accessory and non-catalytic subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0MQC3|ACPM_PANTR Acyl carrier protein, mitochondrial OS=Pan troglodytes GN=NDUFAB1 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D ++ V+K +  +DP K++ N HF  DLGLD+LD VEI+MA+++EFGFEIPD +A+ +  
Sbjct: 81  DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC 140

Query: 61  INMAVNFTA 69
               V++ A
Sbjct: 141 PQEIVDYIA 149

Carrier of the growing fatty acid chain in fatty acid biosynthesis in mitochondria. Accessory and non-catalytic subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain.

Pan troglodytes (taxid: 9598)

>sp|O14561|ACPM_HUMAN Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D ++ V+K +  +DP K++ N HF  DLGLD+LD VEI+MA+++EFGFEIPD +A+ +  
Sbjct: 81  DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC 140

Query: 61  INMAVNFTA 69
               V++ A
Sbjct: 141 PQEIVDYIA 149

Carrier of the growing fatty acid chain in fatty acid biosynthesis in mitochondria. Accessory and non-catalytic subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain.

Homo sapiens (taxid: 9606)

>sp|Q0MQC2|ACPM_GORGO Acyl carrier protein, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFAB1 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D ++ V+K +  +DP K++ N HF  DLGLD+LD VEI+MA+++EFGFEIPD +A+ +  
Sbjct: 81  DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC 140

Query: 61  INMAVNFTA 69
               V++ A
Sbjct: 141 PQEIVDYIA 149

Carrier of the growing fatty acid chain in fatty acid biosynthesis in mitochondria. Accessory and non-catalytic subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain.

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q0MQC1|ACPM_PONPY Acyl carrier protein, mitochondrial OS=Pongo pygmaeus GN=NDUFAB1 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D ++ V+K +  +DP K++ N HF  DLGLD+LD VEI+MA+++EFGFEIPD +A+ +  
Sbjct: 81  DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC 140

Query: 61  INMAVNFTA 69
               V++ A
Sbjct: 141 PQEIVDYIA 149

Carrier of the growing fatty acid chain in fatty acid biosynthesis in mitochondria. Accessory and non-catalytic subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain.

Pongo pygmaeus (taxid: 9600)

>sp|Q9CR21|ACPM_MOUSE Acyl carrier protein, mitochondrial OS=Mus musculus GN=Ndufab1 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D ++ V+K +  +DP K++ N HF  DLGLD+LD VEI+MA+++EFGFEIPD +A+ +  
Sbjct: 81  DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC 140

Query: 61  INMAVNFTA 69
               V++ A
Sbjct: 141 PQEIVDYIA 149

Carrier of the growing fatty acid chain in fatty acid biosynthesis in mitochondria. Accessory and non-catalytic subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain.

Mus musculus (taxid: 10090)

>sp|P52505|ACPM_BOVIN Acyl carrier protein, mitochondrial OS=Bos taurus GN=NDUFAB1 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D ++ V+K +  +DP K++ N HF  DLGLD+LD VEI+MA+++EFGFEIPD +A+ +  
Sbjct: 81  DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC 140

Query: 61  INMAVNFTA 69
               V++ A
Sbjct: 141 PQEIVDYIA 149

Carrier of the growing fatty acid chain in fatty acid biosynthesis. Accessory and non-catalytic subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain.

Bos taurus (taxid: 9913)

>sp|P11943|ACPM_NEUCR Acyl carrier protein, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-12 PE=1 SV=2

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 3   IISVIKNFQNV-DPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTI 61
           I  V+  F  V DP  +T   HF  DLGLD+LD VE+VMA++EEF  EIPD +AD I+++
Sbjct: 61  IAQVLSGFDKVNDPKNITETAHFANDLGLDSLDTVEVVMAIEEEFSIEIPDKDADQIHSV 120

Query: 62  NMAVNFTASHCQGN 75
           + AV +  S    N
Sbjct: 121 DKAVEYILSQPDAN 134

Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity). May be involved in the synthesis of very-long-chain fatty acids. Accessory and non-catalytic subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|P80920|ACP_LEUMU Acyl carrier protein OS=Leucothrix mucor GN=acpP PE=1 SV=2

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 42/59 (71%)

Query: 13 VDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71
          VD  +VT    F  DLG D+LD VE+VMAL+EEFG EIPD EA+ I T+ +A+++  SH
Sbjct: 18 VDEAEVTNAASFVDDLGADSLDTVELVMALEEEFGTEIPDEEAEKITTVQLAIDYVKSH 76

Carrier of the growing fatty acid chain in fatty acid biosynthesis.

Leucothrix mucor (taxid: 45248)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
157072867	130	acyl-carrier-protein [Triadica sebifera]	1.0	0.576	0.72	3e-23
268527775	130	acyl carrier protein [Arachis hypogaea]	1.0	0.576	0.72	4e-23
388458919	129	acyl carrier protein [Camellia oleifera]	0.986	0.573	0.729	6e-23
388513297	130	unknown [Lotus japonicus]	1.0	0.576	0.706	7e-23
388502334	120	unknown [Lotus japonicus]	1.0	0.625	0.706	8e-23
359476747	127	PREDICTED: acyl carrier protein 2, mitoc	1.0	0.590	0.706	1e-22
297840905	126	hypothetical protein ARALYDRAFT_893919 [	1.0	0.595	0.693	1e-22
255547518	128	acyl carrier protein, putative [Ricinus	1.0	0.585	0.693	2e-22
357507835	130	Acyl carrier protein [Medicago truncatul	1.0	0.576	0.68	2e-22
351724371	128	uncharacterized protein LOC100499669 [Gl	1.0	0.585	0.693	3e-22

>gi|157072867|gb|ABV08889.1| acyl-carrier-protein [Triadica sebifera]

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/75 (72%), Positives = 62/75 (82%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D +ISV+KNFQ VDP KVT N HFQ DLGL +LD VE+VMAL+EEFGFEIPDNEAD IN+
Sbjct: 56  DRVISVVKNFQKVDPSKVTPNAHFQNDLGLGSLDTVEVVMALEEEFGFEIPDNEADKINS 115

Query: 61  INMAVNFTASHCQGN 75
           IN+AV+F ASH Q  
Sbjct: 116 INLAVDFIASHPQAK 130

Source: Triadica sebifera

Species: Triadica sebifera

Genus: Triadica

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|268527775|gb|ACZ06073.1| acyl carrier protein [Arachis hypogaea] gi|284808873|gb|ADB94684.1| acyl carrier protein 2 [Arachis hypogaea]

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/75 (72%), Positives = 61/75 (81%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D +IS +KNFQ VDP KVT N HFQ DLGLD+LD VEIVMAL+EEFGFEIPDNEAD IN+
Sbjct: 56  DRVISCVKNFQKVDPSKVTPNAHFQNDLGLDSLDSVEIVMALEEEFGFEIPDNEADKINS 115

Query: 61  INMAVNFTASHCQGN 75
           I +AV+F ASH Q  
Sbjct: 116 IQLAVDFIASHPQAK 130

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388458919|gb|AFK31314.1| acyl carrier protein [Camellia oleifera]

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/74 (72%), Positives = 62/74 (83%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D +ISV+KNFQ VDP KVT N HFQ DLGLD+LD VEIVMA +EEFGFEIPDNEAD I++
Sbjct: 55  DRVISVVKNFQKVDPSKVTPNAHFQNDLGLDSLDTVEIVMAFEEEFGFEIPDNEADKISS 114

Query: 61  INMAVNFTASHCQG 74
           IN+AV+F ASH Q 
Sbjct: 115 INLAVDFIASHPQA 128

Source: Camellia oleifera

Species: Camellia oleifera

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513297|gb|AFK44710.1| unknown [Lotus japonicus]

 Score =  111 bits (277), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 61/75 (81%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D ++S +KNFQ VDP KVT N HFQ DLGLD+LD VEIVMAL+EEFGFEIPDNEAD IN+
Sbjct: 56  DRVVSCVKNFQKVDPSKVTPNAHFQNDLGLDSLDSVEIVMALEEEFGFEIPDNEADKINS 115

Query: 61  INMAVNFTASHCQGN 75
           I +AV+F ASH Q  
Sbjct: 116 IKLAVDFIASHPQAK 130

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502334|gb|AFK39233.1| unknown [Lotus japonicus]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 61/75 (81%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D ++S +KNFQ VDP KVT N HFQ DLGLD+LD VEIVMAL+EEFGFEIPDNEAD IN+
Sbjct: 46  DRVVSCVKNFQKVDPSKVTPNAHFQNDLGLDSLDSVEIVMALEEEFGFEIPDNEADKINS 105

Query: 61  INMAVNFTASHCQGN 75
           I +AV+F ASH Q  
Sbjct: 106 IKLAVDFIASHPQAK 120

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476747|ref|XP_003631882.1| PREDICTED: acyl carrier protein 2, mitochondrial-like [Vitis vinifera] gi|297735241|emb|CBI17603.3| unnamed protein product [Vitis vinifera]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 62/75 (82%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D +ISV+KNFQ VDP KVT   +FQ DLGLD+LD VE+VMAL+EEFGFEIPDNEAD INT
Sbjct: 53  DRVISVVKNFQKVDPSKVTPTANFQTDLGLDSLDAVEVVMALEEEFGFEIPDNEADKINT 112

Query: 61  INMAVNFTASHCQGN 75
           IN+AV+F +SH Q  
Sbjct: 113 INVAVDFISSHPQAK 127

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840905|ref|XP_002888334.1| hypothetical protein ARALYDRAFT_893919 [Arabidopsis lyrata subsp. lyrata] gi|297334175|gb|EFH64593.1| hypothetical protein ARALYDRAFT_893919 [Arabidopsis lyrata subsp. lyrata]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 61/75 (81%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D ++SV+KNFQ VDP KVT   HFQ DLGLD+LD VE+VMAL+EEFGFEIPDNEAD I +
Sbjct: 52  DRVLSVVKNFQKVDPSKVTPKAHFQNDLGLDSLDSVEVVMALEEEFGFEIPDNEADKIQS 111

Query: 61  INMAVNFTASHCQGN 75
           IN+AV+F ASH Q  
Sbjct: 112 INLAVDFIASHPQAK 126

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547518|ref|XP_002514816.1| acyl carrier protein, putative [Ricinus communis] gi|223545867|gb|EEF47370.1| acyl carrier protein, putative [Ricinus communis]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 62/75 (82%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D +I+V+KNFQ VDP KVT N HFQ DLGLD+LD VE+VMAL+EEFGFEIPDNEAD I++
Sbjct: 54  DRVINVVKNFQKVDPSKVTPNAHFQNDLGLDSLDTVEVVMALEEEFGFEIPDNEADKISS 113

Query: 61  INMAVNFTASHCQGN 75
           I +AVNF +SH Q  
Sbjct: 114 IELAVNFISSHPQAK 128

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507835|ref|XP_003624206.1| Acyl carrier protein [Medicago truncatula] gi|217074522|gb|ACJ85621.1| unknown [Medicago truncatula] gi|355499221|gb|AES80424.1| Acyl carrier protein [Medicago truncatula] gi|388522041|gb|AFK49082.1| unknown [Medicago truncatula]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 62/75 (82%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D ++S +KNFQ VDP KVT + HFQ DLGLD+LD VEIVMAL+EEFGFEIPDNEAD IN+
Sbjct: 56  DRVVSCVKNFQKVDPSKVTPSAHFQNDLGLDSLDAVEIVMALEEEFGFEIPDNEADKINS 115

Query: 61  INMAVNFTASHCQGN 75
           +N+A++F ASH Q  
Sbjct: 116 VNLAIDFIASHPQAK 130

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724371|ref|NP_001238079.1| uncharacterized protein LOC100499669 [Glycine max] gi|255625675|gb|ACU13182.1| unknown [Glycine max]

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 60/75 (80%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D ++S +KNFQ VDP KV  N HFQ DLGLD+LD VEIVMAL+EEFGFEIPDNEAD IN+
Sbjct: 54  DRVVSCVKNFQKVDPSKVNPNAHFQNDLGLDSLDSVEIVMALEEEFGFEIPDNEADKINS 113

Query: 61  INMAVNFTASHCQGN 75
           I +AV+F ASH Q  
Sbjct: 114 IKLAVDFIASHPQAK 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
TAIR|locus:2206300	126	mtACP2 "AT1G65290" [Arabidopsi	0.973	0.579	0.684	5.5e-22
TAIR|locus:2042331	122	MTACP-1 "AT2G44620" [Arabidops	0.946	0.581	0.549	1.4e-16
UNIPROTKB|G4N818	145	MGG_03484 "Acyl carrier protei	0.973	0.503	0.486	6.2e-14
UNIPROTKB|E2RJ92	154	NDUFAB1 "Acyl carrier protein"	0.92	0.448	0.463	3.4e-13
UNIPROTKB|G3X6L0	156	NDUFAB1 "Acyl carrier protein,	0.92	0.442	0.463	7.1e-13
UNIPROTKB|P52505	156	NDUFAB1 "Acyl carrier protein,	0.92	0.442	0.463	7.1e-13
UNIPROTKB|O14561	156	NDUFAB1 "Acyl carrier protein,	0.92	0.442	0.463	7.1e-13
UNIPROTKB|F1SAB6	156	NDUFAB1 "Uncharacterized prote	0.92	0.442	0.463	7.1e-13
MGI|MGI:1917566	156	Ndufab1 "NADH dehydrogenase (u	0.92	0.442	0.463	7.1e-13
RGD|1305619	156	Ndufab1 "NADH dehydrogenase (u	0.92	0.442	0.463	7.1e-13

TAIR|locus:2206300 mtACP2 "AT1G65290" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 50/73 (68%), Positives = 61/73 (83%)

Query:     1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
             D ++SV+KNFQ VDP KVT   +FQ DLGLD+LD VE+VMAL+EEFGFEIPDNEAD I +
Sbjct:    52 DRVLSVVKNFQKVDPSKVTPKANFQNDLGLDSLDSVEVVMALEEEFGFEIPDNEADKIQS 111

Query:    61 INMAVNFTASHCQ 73
             I++AV+F ASH Q
Sbjct:   112 IDLAVDFIASHPQ 124

GO:0000036 "ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA;ISS

GO:0031177 "phosphopantetheine binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

TAIR|locus:2042331 MTACP-1 "AT2G44620" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 39/71 (54%), Positives = 53/71 (74%)

Query:     1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
             D ++ V+K+F  VDP KVT   HFQ DLGLD+LD VEIVMA++EEF  EIPD EAD I++
Sbjct:    48 DRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKIDS 107

Query:    61 INMAVNFTASH 71
              ++A+ +  +H
Sbjct:   108 CSLAIEYVYNH 118

GO:0000036 "ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA;ISS;IDA

GO:0031177 "phosphopantetheine binding" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

UNIPROTKB|G4N818 MGG_03484 "Acyl carrier protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 36/74 (48%), Positives = 51/74 (68%)

Query:     3 IISVIKNFQNV-DPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTI 61
             IIS+++ F  V DP K+  + HF  DLGLD+LD VE+VMA++EEF  EIPD +AD I+++
Sbjct:    72 IISLLQKFDKVNDPSKIQPSSHFANDLGLDSLDTVEVVMAIEEEFSIEIPDKDADQIHSV 131

Query:    62 NMAVNFTASHCQGN 75
             + AV +  S    N
Sbjct:   132 DKAVEYILSQPDAN 145

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E2RJ92 NDUFAB1 "Acyl carrier protein" [Canis lupus familiaris (taxid:9615)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query:     1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
             D ++ V+K +  +DP K++ N HF  DLGLD+LD VEI+MA+++EFGFEIPD +A+ +  
Sbjct:    79 DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDTDAEKLMC 138

Query:    61 INMAVNFTA 69
                 V++ A
Sbjct:   139 PQEIVDYIA 147

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

UNIPROTKB|G3X6L0 NDUFAB1 "Acyl carrier protein, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query:     1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
             D ++ V+K +  +DP K++ N HF  DLGLD+LD VEI+MA+++EFGFEIPD +A+ +  
Sbjct:    81 DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC 140

Query:    61 INMAVNFTA 69
                 V++ A
Sbjct:   141 PQEIVDYIA 149

GO:0009249 "protein lipoylation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

UNIPROTKB|P52505 NDUFAB1 "Acyl carrier protein, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query:     1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
             D ++ V+K +  +DP K++ N HF  DLGLD+LD VEI+MA+++EFGFEIPD +A+ +  
Sbjct:    81 DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC 140

Query:    61 INMAVNFTA 69
                 V++ A
Sbjct:   141 PQEIVDYIA 149

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=TAS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=TAS

GO:0005504 "fatty acid binding" evidence=IDA

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=TAS

GO:0006633 "fatty acid biosynthetic process" evidence=TAS

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

UNIPROTKB|O14561 NDUFAB1 "Acyl carrier protein, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query:     1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
             D ++ V+K +  +DP K++ N HF  DLGLD+LD VEI+MA+++EFGFEIPD +A+ +  
Sbjct:    81 DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC 140

Query:    61 INMAVNFTA 69
                 V++ A
Sbjct:   141 PQEIVDYIA 149

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS;IDA;NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=NAS

GO:0005504 "fatty acid binding" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS;NAS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0005509 "calcium ion binding" evidence=NAS

GO:0006633 "fatty acid biosynthetic process" evidence=NAS

GO:0000036 "ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process" evidence=NAS

GO:0009249 "protein lipoylation" evidence=IMP

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1SAB6 NDUFAB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query:     1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
             D ++ V+K +  +DP K++ N HF  DLGLD+LD VEI+MA+++EFGFEIPD +A+ +  
Sbjct:    81 DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC 140

Query:    61 INMAVNFTA 69
                 V++ A
Sbjct:   141 PQEIVDYIA 149

GO:0009249 "protein lipoylation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

MGI|MGI:1917566 Ndufab1 "NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1" [Mus musculus (taxid:10090)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query:     1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
             D ++ V+K +  +DP K++ N HF  DLGLD+LD VEI+MA+++EFGFEIPD +A+ +  
Sbjct:    81 DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC 140

Query:    61 INMAVNFTA 69
                 V++ A
Sbjct:   141 PQEIVDYIA 149

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0009249 "protein lipoylation" evidence=ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

RGD|1305619 Ndufab1 "NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1" [Rattus norvegicus (taxid:10116)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 32/69 (46%), Positives = 49/69 (71%)

Query:     1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
             D ++ V+K +  +DP K++ N HF  DLGLD+LD VEI+MA+++EFGFEIPD +A+ +  
Sbjct:    81 DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC 140

Query:    61 INMAVNFTA 69
                 V++ A
Sbjct:   141 PQEIVDYIA 149

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0009249 "protein lipoylation" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B9DPJ1	ACP_STACT	No assigned EC number	0.5074	0.8933	0.8701	yes	no
P0A001	ACP_STAAM	No assigned EC number	0.4857	0.9333	0.9090	yes	no
P0A003	ACP_STAAW	No assigned EC number	0.4857	0.9333	0.9090	yes	no
B1XTK9	ACP_POLNS	No assigned EC number	0.5625	0.64	0.6075	yes	no
B1XZN7	ACP_LEPCP	No assigned EC number	0.4142	0.9333	0.8860	yes	no
A5ISB7	ACP_STAA9	No assigned EC number	0.4857	0.9333	0.9090	yes	no
A5EXE0	ACP_DICNV	No assigned EC number	0.4647	0.9466	0.9342	yes	no
A8Z3R8	ACP_STAAT	No assigned EC number	0.4857	0.9333	0.9090	yes	no
Q8CPI2	ACP_STAES	No assigned EC number	0.4714	0.9333	0.9090	yes	no
A7X1J8	ACP_STAA1	No assigned EC number	0.4857	0.9333	0.9090	yes	no
A6U151	ACP_STAA2	No assigned EC number	0.4857	0.9333	0.9090	yes	no
A6QGD2	ACP_STAAE	No assigned EC number	0.4857	0.9333	0.9090	yes	no
Q72LL3	ACP_THET2	No assigned EC number	0.4166	0.96	0.9	yes	no
Q6GHK3	ACP_STAAR	No assigned EC number	0.4857	0.9333	0.9090	yes	no
Q5HGK0	ACP_STAAC	No assigned EC number	0.4857	0.9333	0.9090	yes	no
Q2YXI4	ACP_STAAB	No assigned EC number	0.4857	0.9333	0.9090	yes	no
A1WWE5	ACP_HALHL	No assigned EC number	0.4324	0.9866	0.9367	yes	no
Q6G9Y1	ACP_STAAS	No assigned EC number	0.4857	0.9333	0.9090	yes	no
P0A002	ACP_STAAN	No assigned EC number	0.4857	0.9333	0.9090	yes	no
Q49X16	ACP_STAS1	No assigned EC number	0.4857	0.9333	0.9090	yes	no
Q2FZ51	ACP_STAA8	No assigned EC number	0.4857	0.9333	0.9090	yes	no
Q5SL79	ACP_THET8	No assigned EC number	0.4166	0.96	0.9	yes	no
Q5HPV9	ACP_STAEQ	No assigned EC number	0.4714	0.9333	0.9090	yes	no
Q4L5T4	ACP_STAHJ	No assigned EC number	0.4714	0.9333	0.9090	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_200993.1	annotation not avaliable (126 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.2__215__AT1G62640.1	annotation not avaliable (404 aa)	•					•	•		0.890
	fgenesh2_kg.4__990__AT2G30200.1	annotation not avaliable (367 aa)	•			•		•	•		0.863
	fgenesh2_kg.3__2794__AT2G04540.1	annotation not avaliable (460 aa)	•					•	•		0.715
	fgenesh2_kg.8__160__AT5G46290.1	annotation not avaliable (473 aa)	•						•		0.699
	fgenesh2_kg.2__1765__AT1G74960.1	annotation not avaliable (543 aa)	•						•		0.578
	Al_scaffold_0001_1997	annotation not avaliable (482 aa)	•						•		0.574
	fgenesh2_kg.6__977__AT5G10160.1	annotation not avaliable (219 aa)	•						•		0.528
	fgenesh2_kg.7__3034__AT5G35360.1	annotation not avaliable (537 aa)	•						•		0.506
	fgenesh2_kg.4__146__AT2G22230.1	annotation not avaliable (224 aa)	•						•		0.504
	fgenesh2_kg.7__1236__AT4G29540.2	annotation not avaliable (336 aa)						•	•		0.435

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	75
TIGR00517	77	TIGR00517, acyl_carrier, acyl carrier protein	6e-18
PRK00982	78	PRK00982, acpP, acyl carrier protein; Provisional	8e-17
COG0236	80	COG0236, AcpP, Acyl carrier protein [Lipid metabol	3e-15
PTZ00171	148	PTZ00171, PTZ00171, acyl carrier protein; Provisio	8e-15
CHL00124	82	CHL00124, acpP, acyl carrier protein; Validated	5e-13
PRK06508	93	PRK06508, PRK06508, acyl carrier protein; Provisio	1e-05
PRK12449	80	PRK12449, PRK12449, acyl carrier protein; Provisio	2e-04
pfam00550	66	pfam00550, PP-binding, Phosphopantetheine attachme	3e-04

>gnl|CDD|213536 TIGR00517, acyl_carrier, acyl carrier protein

 Score = 70.1 bits (172), Expect = 6e-18
 Identities = 34/71 (47%), Positives = 48/71 (67%)

Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
          + + ++IK   NVD  ++TT+  F  DLG D+LD VE+VMAL+EEF  EIPD EA+ I T
Sbjct: 6  EKVKAIIKEQLNVDEDQITTDARFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIAT 65

Query: 61 INMAVNFTASH 71
          +  AVN+   +
Sbjct: 66 VGDAVNYIEEN 76

This small protein has phosphopantetheine covalently bound to a Ser residue. It acts as a carrier of the growing fatty acid chain, which is bound to the prosthetic group, during fatty acid biosynthesis. Homologous phosphopantetheine-binding domains are found in longer proteins. Acyl carrier proteins scoring above the noise cutoff but below the trusted cutoff may be specialized versions. These include those involved in mycolic acid biosynthesis in the Mycobacteria, lipid A biosynthesis in Rhizobium, actinorhodin polyketide synthesis in Streptomyces coelicolor, etc. This protein is not found in the Archaea.Gene name acpP.S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 77

>gnl|CDD|179197 PRK00982, acpP, acyl carrier protein; Provisional

 Score = 67.1 bits (165), Expect = 8e-17
 Identities = 31/60 (51%), Positives = 40/60 (66%)

Query: 12 NVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71
           VD  +VT    F  DLG D+LD VE+VMAL+EEFG EIPD +A+ I T+  AV++   H
Sbjct: 17 GVDEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEKH 76

Length = 78

>gnl|CDD|223314 COG0236, AcpP, Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 63.1 bits (154), Expect = 3e-15
 Identities = 31/67 (46%), Positives = 43/67 (64%)

Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
          + +  +I     VD  ++TT   F  DLGLD+LD VE+VMAL+EEFG EIPD E + I T
Sbjct: 8  ERVKDIIAEQLGVDEEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKT 67

Query: 61 INMAVNF 67
          +   V++
Sbjct: 68 VGDLVDY 74

Length = 80

>gnl|CDD|240304 PTZ00171, PTZ00171, acyl carrier protein; Provisional

 Score = 63.9 bits (156), Expect = 8e-15
 Identities = 27/67 (40%), Positives = 46/67 (68%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
             +  V+KNF+ VD  K+T   +F  DLG D+LD VE+++A+++EF   IPD++A+ I T
Sbjct: 73  TRVKKVVKNFEKVDASKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKT 132

Query: 61  INMAVNF 67
           +  A+++
Sbjct: 133 VQDAIDY 139

Length = 148

>gnl|CDD|177047 CHL00124, acpP, acyl carrier protein; Validated

 Score = 57.7 bits (140), Expect = 5e-13
 Identities = 26/59 (44%), Positives = 42/59 (71%)

Query: 13 VDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71
          ++  +VT + +F  DLG D+LD VE+VMA++E+F  EIPD +A+ I+T+  AV+F +  
Sbjct: 20 IEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQK 78

Length = 82

>gnl|CDD|180597 PRK06508, PRK06508, acyl carrier protein; Provisional

 Score = 39.0 bits (91), Expect = 1e-05
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIP 51
          D +  +I    ++    +T   H   DLG+D+LDF++IV A+ + FG ++P
Sbjct: 6  DKVADIIAETSDIPRDTITPESHTIDDLGIDSLDFLDIVFAIDKAFGIKLP 56

Length = 93

>gnl|CDD|183533 PRK12449, PRK12449, acyl carrier protein; Provisional

 Score = 35.5 bits (82), Expect = 2e-04
 Identities = 14/71 (19%), Positives = 40/71 (56%)

Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
          + +I++I+  ++     +T   H + DL +D+++ VE ++ +++EF   IPD + + + +
Sbjct: 8  ERLINLIQKQRSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVS 67

Query: 61 INMAVNFTASH 71
          +   +++    
Sbjct: 68 MGDLLDYLVQR 78

Length = 80

>gnl|CDD|215989 pfam00550, PP-binding, Phosphopantetheine attachment site

 Score = 34.8 bits (81), Expect = 3e-04
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 27 DLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNF 67
          DLGLD+L  VE++  L+EEFG EIP ++     T+     +
Sbjct: 25 DLGLDSLLAVELLARLEEEFGVEIPPSDLFEHPTLGELAAY 65

A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Vibrio anguillarum angR has the attachment serine replaced by an alanine. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	75
PRK08172	82	putative acyl carrier protein IacP; Validated	99.9
PRK05350	82	acyl carrier protein; Provisional	99.88
PRK05883	91	acyl carrier protein; Validated	99.88
CHL00124	82	acpP acyl carrier protein; Validated	99.87
TIGR00517	77	acyl_carrier acyl carrier protein. S (Ser) at posi	99.87
PRK07117	79	acyl carrier protein; Validated	99.86
PRK12449	80	acyl carrier protein; Provisional	99.86
KOG1748	131	consensus Acyl carrier protein/NADH-ubiquinone oxi	99.86
PRK07639	86	acyl carrier protein; Provisional	99.85
PTZ00171	148	acyl carrier protein; Provisional	99.85
PRK05828	84	acyl carrier protein; Validated	99.85
COG0236	80	AcpP Acyl carrier protein [Lipid metabolism / Seco	99.84
PRK06508	93	acyl carrier protein; Provisional	99.84
PRK00982	78	acpP acyl carrier protein; Provisional	99.83
PRK09184	89	acyl carrier protein; Provisional	99.82
PRK07081	83	acyl carrier protein; Provisional	99.79
PF00550	67	PP-binding: Phosphopantetheine attachment site; In	99.79
PRK05087	78	D-alanine--poly(phosphoribitol) ligase subunit 2;	99.77
TIGR01688	73	dltC D-alanine--poly(phosphoribitol) ligase, subun	99.65
PF14573	96	PP-binding_2: Acyl-carrier; PDB: 3CE7_A.	99.4
smart00823	86	PKS_PP Phosphopantetheine attachment site. Phospho	99.11
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	99.1
COG3433	74	Aryl carrier domain [Secondary metabolites biosynt	99.04
PRK06060	705	acyl-CoA synthetase; Validated	99.01
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	98.9
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	98.7
PRK12467	3956	peptide synthase; Provisional	98.54
PRK12316	5163	peptide synthase; Provisional	98.48
PRK05691	4334	peptide synthase; Validated	98.47
PRK12467	3956	peptide synthase; Provisional	98.44
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	98.44
PRK05691	4334	peptide synthase; Validated	98.42
PRK12316	5163	peptide synthase; Provisional	98.31
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	98.01
PF07377	111	DUF1493: Protein of unknown function (DUF1493); In	97.79
PF10501	112	Ribosomal_L50: Ribosomal subunit 39S; InterPro: IP	96.55
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	96.13
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	94.94
KOG2452	881	consensus Formyltetrahydrofolate dehydrogenase [Nu	92.43
PF08766	54	DEK_C: DEK C terminal domain; InterPro: IPR014876	89.84

>PRK08172 putative acyl carrier protein IacP; Validated

Probab=99.90  E-value=3.5e-24  Score=116.03  Aligned_cols=74  Identities=24%  Similarity=0.327  Sum_probs=71.0

Q ss_pred             ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770            1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG   74 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~   74 (75)
                      +++++++++.+++++++++++++|.+++||||+++++++..+|++||++||.+++.++.|++++++|+.+++++
T Consensus         7 ~~v~~iiae~l~v~~~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~~~v~~~~~~   80 (82)
T PRK08172          7 ARVKKVITSCIAVDVDSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADICRVVKKSLES   80 (82)
T ss_pred             HHHHHHHHHHHCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHHHhc
Confidence            47899999999999999999999998999999999999999999999999999999999999999999998764

>PRK05350 acyl carrier protein; Provisional

Probab=99.88  E-value=8.3e-23  Score=110.48  Aligned_cols=72  Identities=22%  Similarity=0.364  Sum_probs=69.0

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ   73 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~   73 (75)
                      ++++++++.+++++.+++++++|.+++||||+++++++.++|++||+++|++++.++.|++++++||.++++
T Consensus        10 ~v~~ii~~~~~~~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v~~~~~   81 (82)
T PRK05350         10 RLRAILVELFEIDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVERLLK   81 (82)
T ss_pred             HHHHHHHHHhCCCHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHHHHHhc
Confidence            688999999999999999999988899999999999999999999999999999999999999999998875

>PRK05883 acyl carrier protein; Validated

Probab=99.88  E-value=1.7e-22  Score=111.27  Aligned_cols=73  Identities=22%  Similarity=0.373  Sum_probs=69.9

Q ss_pred             ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770            1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ   73 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~   73 (75)
                      ++++++|++.++++++.++++++|.+++||||+++++++..+|++||++||++++.++.||+++++||.++++
T Consensus        17 ~~l~~iia~~l~v~~~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~v~~~~~   89 (91)
T PRK05883         17 ATLLSILRDDLNVDLTRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIAAKVR   89 (91)
T ss_pred             HHHHHHHHHHhCCChhhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHcc
Confidence            3689999999999999999999998899999999999999999999999999999999999999999998865

>CHL00124 acpP acyl carrier protein; Validated

Probab=99.87  E-value=1.8e-22  Score=108.95  Aligned_cols=75  Identities=36%  Similarity=0.629  Sum_probs=70.5

Q ss_pred             ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcCC
Q 042770            1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQGN   75 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~~   75 (75)
                      +++++++++.++++++.++++++|.+++||||+++++++..+|++||+++|++++.+++|++++++||.++++++
T Consensus         8 ~~l~~ii~~~~~~~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~~   82 (82)
T CHL00124          8 EKVQSIVAEQLGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQKINKK   82 (82)
T ss_pred             HHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHHHHhccC
Confidence            368899999999999999999999877999999999999999999999999999999999999999999988764

>TIGR00517 acyl_carrier acyl carrier protein

Probab=99.87  E-value=3.9e-22  Score=106.50  Aligned_cols=72  Identities=46%  Similarity=0.663  Sum_probs=68.0

Q ss_pred             ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      +++++++++.+++++.+++++++|.+++||||+++++++..+|++||+++|++++.++.|++++++||.+++
T Consensus         6 ~~l~~il~~~~~~~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   77 (77)
T TIGR00517         6 EKVKAIIKEQLNVDEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDYIEENQ   77 (77)
T ss_pred             HHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHHHhcC
Confidence            368999999999999999999999889999999999999999999999999999999999999999998753

S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.

>PRK07117 acyl carrier protein; Validated

Probab=99.86  E-value=4e-22  Score=107.28  Aligned_cols=71  Identities=21%  Similarity=0.322  Sum_probs=67.2

Q ss_pred             ChHHHHHHhhh-CCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            1 DPIISVIKNFQ-NVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         1 ~~v~~ii~~~~-~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      ++|++++++++ ++++++++++++|. +||+||++++++++.+|++||++||.+++.+++|++++++|+.+++
T Consensus         8 ~~v~~ii~e~~p~i~~~~I~~~~~l~-DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~~i~~~~   79 (79)
T PRK07117          8 DILVRHIREVLPDLDQHQFQPEDSLV-DLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELADLLYAKL   79 (79)
T ss_pred             HHHHHHHHHHcCCCCHHHCCCCCChh-hcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHHHHHHhC
Confidence            37899999999 79999999999996 8999999999999999999999999999999999999999998863

>PRK12449 acyl carrier protein; Provisional

Probab=99.86  E-value=1e-21  Score=105.59  Aligned_cols=72  Identities=19%  Similarity=0.487  Sum_probs=68.5

Q ss_pred             ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      +++++++++.+++++..++++++|.+++||||++++++++++|++||+.+|+.++.++.|++++++|+.+++
T Consensus         8 ~~l~~il~~~~~~~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~~~~   79 (80)
T PRK12449          8 ERLINLIQKQRSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQRL   79 (80)
T ss_pred             HHHHHHHHHHhCCCccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHhc
Confidence            368899999999999999999999889999999999999999999999999999999999999999998875

>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.86  E-value=3.5e-22  Score=114.97  Aligned_cols=74  Identities=51%  Similarity=0.811  Sum_probs=70.5

Q ss_pred             ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770            1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG   74 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~   74 (75)
                      ++|..++..+..++++.++++++|..|||+|||+.||+++++|++||++||+.+..++.|+++.++||..+...
T Consensus        56 ~RVl~VVk~~dki~~~k~~~~s~f~~DLGlDSLD~VEiVMAlEEEFgiEIpd~dAdki~t~~da~~yI~~~~d~  129 (131)
T KOG1748|consen   56 DRVLDVVKKFDKIDPSKLTTDSDFFKDLGLDSLDTVEIVMALEEEFGIEIPDEDADKIKTVRDAADYIADKPDV  129 (131)
T ss_pred             HHHHHHHHHhhcCCccccchhhHHHHhcCCcccccchhhhhhHHHhCCccCcchhhhhCCHHHHHHHHHhcccc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999988654

>PRK07639 acyl carrier protein; Provisional

Probab=99.85  E-value=3.1e-21  Score=105.25  Aligned_cols=73  Identities=10%  Similarity=0.288  Sum_probs=68.1

Q ss_pred             ChHHHHHHhhhCCCC-CCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchh--hhhccHHHHHHHHHhhhc
Q 042770            1 DPIISVIKNFQNVDP-FKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEA--DIINTINMAVNFTASHCQ   73 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~-~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~--~~~~tv~~l~~~i~~~~~   73 (75)
                      ++|++++++.++.++ ++++++++|.+++|+||++++++++++|++||++||++++  .++.|++++++||.++++
T Consensus         8 ~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~~i~~~~~   83 (86)
T PRK07639          8 NAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLDFMEELQP   83 (86)
T ss_pred             HHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHHHHHHhhc
Confidence            368999999999985 8899999999999999999999999999999999999987  799999999999998764

>PTZ00171 acyl carrier protein; Provisional

Probab=99.85  E-value=1.8e-21  Score=115.11  Aligned_cols=75  Identities=36%  Similarity=0.670  Sum_probs=70.7

Q ss_pred             ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcCC
Q 042770            1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQGN   75 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~~   75 (75)
                      +++++++++.++++++.++++++|.+++|||||+++++++.+|++||+.||++++.++.|++++++||.++.+++
T Consensus        73 ~~l~eiiae~l~vd~~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ipded~~~i~TV~dlvd~V~~~~~~~  147 (148)
T PTZ00171         73 TRVKKVVKNFEKVDASKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKTVQDAIDYIEQNNMAK  147 (148)
T ss_pred             HHHHHHHHHHhCCCHhhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHHCCCHHHHHHHHHHHHhcc
Confidence            368899999999999999999999889999999999999999999999999999999999999999999987653

>PRK05828 acyl carrier protein; Validated

Probab=99.85  E-value=3e-21  Score=104.90  Aligned_cols=73  Identities=19%  Similarity=0.249  Sum_probs=67.5

Q ss_pred             ChHHHHHHh-hhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770            1 DPIISVIKN-FQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG   74 (75)
Q Consensus         1 ~~v~~ii~~-~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~   74 (75)
                      +++++++++ .++++++.++++++|. +||+||++++++++++|++||++||.+++.++.|++++++||.+++++
T Consensus         8 ~~i~~ii~e~~~~~~~d~i~~~~~~~-dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~v~~~~~~   81 (84)
T PRK05828          8 LKIKEIAKKKNFAVTLDESNINKPYR-ELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILEVKELKKQ   81 (84)
T ss_pred             HHHHHHHHHhccCCCcccccCCCCHH-hcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHHhc
Confidence            368889997 6889999999999995 899999999999999999999999999999999999999999987754

>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.84  E-value=7.2e-21  Score=102.45  Aligned_cols=71  Identities=44%  Similarity=0.660  Sum_probs=67.7

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      ++++++++.++.++.+++++++|..++|+||+++++|++.||++||++||++++.++.|++++++||.++.
T Consensus         9 ~i~~ii~e~l~~~~~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~i~~~~   79 (80)
T COG0236           9 RVKDIIAEQLGVDEEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDYIEELL   79 (80)
T ss_pred             HHHHHHHHHhCCchhhcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHHHHHhc
Confidence            68899999999999999999999867999999999999999999999999999999999999999999865

>PRK06508 acyl carrier protein; Provisional

Probab=99.84  E-value=5.7e-21  Score=105.47  Aligned_cols=74  Identities=23%  Similarity=0.387  Sum_probs=67.5

Q ss_pred             ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhh-----------hhccHHHHHHHHH
Q 042770            1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEAD-----------IINTINMAVNFTA   69 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~-----------~~~tv~~l~~~i~   69 (75)
                      ++|++++++.++++++.++|++++.++||||||++++++..+|++|||+||.+++.           ++.|+++++.+|.
T Consensus         6 ekv~~Ilae~~~vd~~~It~ds~~~edL~~DSLd~veli~~lE~eFgI~i~~ee~~~~~n~~~~~~~~~~~l~~~~~~i~   85 (93)
T PRK06508          6 DKVADIIAETSDIPRDTITPESHTIDDLGIDSLDFLDIVFAIDKAFGIKLPLEQWTQEVNEGKVPTEEYFVLKNLCAKID   85 (93)
T ss_pred             HHHHHHHHHHhCCCHHHCCCCCcchhccCCCHHHHHHHHHHHHHHHCCccCHHHHHHhhcccccccchHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999875           5668889999998


Q ss_pred             hhhcC
Q 042770           70 SHCQG   74 (75)
Q Consensus        70 ~~~~~   74 (75)
                      +..++
T Consensus        86 ~~~~~   90 (93)
T PRK06508         86 ELVAA   90 (93)
T ss_pred             HHHHh
Confidence            87665

>PRK00982 acpP acyl carrier protein; Provisional

Probab=99.83  E-value=1e-20  Score=101.16  Aligned_cols=71  Identities=45%  Similarity=0.659  Sum_probs=67.6

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      ++++++++.++++++.++++++|..++||||+++++++..+|++||+++|++++.++.|++++++++.+++
T Consensus         7 ~l~~~l~~~l~~~~~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~l~~~~   77 (78)
T PRK00982          7 KVKKIIVEQLGVDEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEKHQ   77 (78)
T ss_pred             HHHHHHHHHHCCCHHHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHHHHHhc
Confidence            68899999999999999999999669999999999999999999999999999999999999999998875

>PRK09184 acyl carrier protein; Provisional

Probab=99.82  E-value=4.4e-20  Score=101.26  Aligned_cols=73  Identities=21%  Similarity=0.485  Sum_probs=64.5

Q ss_pred             ChHHHHHHhhhCC---CCCCCCCCCCc-ccccCcchhHHHHHHHHHHHHhCCcCCcchh---hhhccHHHHHHHHHhhhc
Q 042770            1 DPIISVIKNFQNV---DPFKVTTNGHF-QIDLGLDNLDFVEIVMALKEEFGFEIPDNEA---DIINTINMAVNFTASHCQ   73 (75)
Q Consensus         1 ~~v~~ii~~~~~~---~~~~i~~~~~l-~~dlglDSl~~v~l~~~le~~f~i~i~~~~~---~~~~tv~~l~~~i~~~~~   73 (75)
                      ++|+++|++.+++   ++++|+++++| .++||+||+++++|++.+|++||++||+++.   ..++||+++++||.++.+
T Consensus         9 ~~l~~~I~e~l~~~~i~~~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~~I~~~~~   88 (89)
T PRK09184          9 RELAELIVEELNLEDVQPESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAAYVAAHRT   88 (89)
T ss_pred             HHHHHHHHHHHCCCCCCHHHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHHHHHHhhc
Confidence            3688999999985   89999999997 4479999999999999999999999987654   568999999999998754

>PRK07081 acyl carrier protein; Provisional

Probab=99.79  E-value=2.6e-19  Score=97.08  Aligned_cols=72  Identities=19%  Similarity=0.409  Sum_probs=64.9

Q ss_pred             ChHHHHHHhhh--CCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhh--hhccHHHHHHHHHhhhc
Q 042770            1 DPIISVIKNFQ--NVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEAD--IINTINMAVNFTASHCQ   73 (75)
Q Consensus         1 ~~v~~ii~~~~--~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~--~~~tv~~l~~~i~~~~~   73 (75)
                      +++++++.+.+  +++++.++++++|. ++|+||+++++++..+|++||++||++++.  ++.|+++++++|.++++
T Consensus         3 ~~i~~ii~~~~~~~~~~~~i~~d~~l~-dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~~V~~~~~   78 (83)
T PRK07081          3 NTIRTILKKVAKLEVPIDSIADDADLY-EAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAGAVTQLQD   78 (83)
T ss_pred             HHHHHHHHHHHcCCCCHHhcCCCCCHh-hcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHHHHHHHHh
Confidence            47899999985  45678999999996 899999999999999999999999999984  59999999999998765

>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []

Probab=99.79  E-value=4.5e-19  Score=91.88  Aligned_cols=67  Identities=34%  Similarity=0.567  Sum_probs=64.4

Q ss_pred             ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHH
Q 042770            1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFT   68 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i   68 (75)
                      |+|++++++.+++++.+++++++|. ++|+||+.+++++..++++||+.+|..++.+++|+++++++|
T Consensus         1 e~l~~~~~~~l~~~~~~i~~~~~~~-~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l~~~i   67 (67)
T PF00550_consen    1 EQLREIIAEVLGVDPEEIDPDTDFF-DLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDLAEYI   67 (67)
T ss_dssp             HHHHHHHHHHHTSSGGCTSTTSBTT-TTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHHHHHH
T ss_pred             CHHHHHHHHHHCcCHhhCCCCCCHH-HhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHHHhHC
Confidence            4789999999999999999999997 899999999999999999999999999999999999999986

The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....

>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated

Probab=99.77  E-value=1.4e-18  Score=93.22  Aligned_cols=72  Identities=19%  Similarity=0.286  Sum_probs=65.3

Q ss_pred             ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhh--hhccHHHHHHHHHhhh
Q 042770            1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEAD--IINTINMAVNFTASHC   72 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~--~~~tv~~l~~~i~~~~   72 (75)
                      ++|++++.+.++.++.++++++++.++.++||+++++|++.+|++||++||++++.  ++.|++++++||.+.+
T Consensus         5 ~~I~~iL~~~~~~~~~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i~~~v~~l~   78 (78)
T PRK05087          5 EQVLDILEELTGEDIVSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEELQ   78 (78)
T ss_pred             HHHHHHHHHHhCCChhccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCHHhhcCHHHHHHHHHHcC
Confidence            47899999999998888999999987777999999999999999999999999984  4999999999998763

>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2

Probab=99.65  E-value=4.4e-16  Score=82.47  Aligned_cols=69  Identities=19%  Similarity=0.361  Sum_probs=62.2

Q ss_pred             ChHHHHHHhhhCCCCCCCCCCCCcccccCc-chhHHHHHHHHHHHHhCCcCCcchh--hhhccHHHHHHHHHh
Q 042770            1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGL-DNLDFVEIVMALKEEFGFEIPDNEA--DIINTINMAVNFTAS   70 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlgl-DSl~~v~l~~~le~~f~i~i~~~~~--~~~~tv~~l~~~i~~   70 (75)
                      ++|++++++..|.+.....++++|. +.|+ ||+..++|+..||++|||++|+.++  .+|.|++.++++|++
T Consensus         2 e~i~eIL~~i~~~~~~~~~~d~~L~-~~GllDS~~~v~Li~~lE~ef~I~i~~~el~~enf~S~~~i~~~v~~   73 (73)
T TIGR01688         2 NGVLDILAEVTGSDDVKENPDLELF-EEGLLDSFGTVQLLLEIQNQFDIDVPISEFDRDEWDTPNKIVAKLEE   73 (73)
T ss_pred             hHHHHHHHHHhcCcccccCccHHHH-HccchhHHHHHHHHHHHHHHhCCccCHHHcCHHHhcCHHHHHHHHhC
Confidence            5799999999887766679999998 6775 9999999999999999999999998  899999999998863

This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.

>PF14573 PP-binding_2: Acyl-carrier; PDB: 3CE7_A

Probab=99.40  E-value=9.2e-13  Score=71.41  Aligned_cols=71  Identities=31%  Similarity=0.490  Sum_probs=45.9

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCc-----ccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHF-----QIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ   73 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l-----~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~   73 (75)
                      ++..++.+++.-. .++++.+.+     .+++.||||+.++++..+|++|++.||++...+++|++++++|+.++.+
T Consensus        14 ~i~g~~kkyl~~~-~~it~~skL~e~rt~e~r~wD~LDtVefvldVEe~F~V~IpDE~aDN~~tvqeIadfvv~~r~   89 (96)
T PF14573_consen   14 YILGMLKKYLSEG-EEITYTSKLEESRTKEDRAWDSLDTVEFVLDVEEEFDVTIPDETADNIKTVQEIADFVVQERQ   89 (96)
T ss_dssp             HHHHHHHTTB-TT-----TTS-GGGSBBTTSSB--HHHHHHHHHHHHHHHT----HHHHTT--SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC-CccChhhhhHHhccccccccchhhhHHHHHhHHHHcCcccCccccchhhHHHHHHHHHHHHHH
Confidence            4556666665321 234443333     4689999999999999999999999999999999999999999987654

>smart00823 PKS_PP Phosphopantetheine attachment site

Probab=99.11  E-value=4.5e-10  Score=58.86  Aligned_cols=68  Identities=21%  Similarity=0.250  Sum_probs=59.8

Q ss_pred             HHHHHHhhhCCCCCC-CCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770            3 IISVIKNFQNVDPFK-VTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH   71 (75)
Q Consensus         3 v~~ii~~~~~~~~~~-i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~   71 (75)
                      +...+...++..... +..+++|. ++|+||+..+++...+++.||+.+|...+....|+..+++++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~l~-~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~l~~~i~~~   85 (86)
T smart00823       17 VREQVAAVLGHAAAEAIDPDRPFR-DLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLAAE   85 (86)
T ss_pred             HHHHHHHHHCCCccccCCCCCCHH-HcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHHHHHHHHHh
Confidence            556677777776665 48899996 899999999999999999999999999999999999999998765

Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311.

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=99.10  E-value=1.5e-10  Score=90.03  Aligned_cols=72  Identities=17%  Similarity=0.280  Sum_probs=67.8

Q ss_pred             ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhC--CcCCcchhhhhccHHHHHHHHHhhh
Q 042770            1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFG--FEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~--i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      +++++++++.+|++.+.++++.+|.+|||+||+..+++++.++++|+  .+++++++.++.|++++++|+..+.
T Consensus      1310 ~~vl~vvae~tgyp~e~L~~d~~le~DLGiDSI~~vEil~~le~~f~~~~~i~~e~l~~l~Tl~div~~i~~~~ 1383 (2582)
T TIGR02813      1310 NVMLEVVADKTGYPTEMLELEMDMEADLGIDSIKRVEILGTVQDTLPDLPELSPEDLAECRTLGEIVSYMQSKV 1383 (2582)
T ss_pred             HHHHHHHHHHhCCCHHHcCcccCchhhcCCCHHHHHHHHHHHHHhcCCcCCCChhHhhhcccHHHHHHHHhhcc
Confidence            36889999999999999999999999999999999999999999999  8899999999999999999998654

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.04  E-value=9.4e-10  Score=57.66  Aligned_cols=71  Identities=11%  Similarity=0.183  Sum_probs=65.0

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG   74 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~   74 (75)
                      -+++.+++.++..+.+++++.++. +.|+||+-+|.+.....+. |..+...++....|++...+.+..+.+.
T Consensus         2 ~Lr~~~~~Ll~e~~~~l~dqeNLi-~~GLDSiR~M~L~~~wR~~-G~~i~F~~La~~PTl~aW~qLl~~~~~~   72 (74)
T COG3433           2 ALREQIAELLGESVEELDDQENLI-DYGLDSIRMMALLERWRKR-GADIDFAQLAANPTLAAWWQLLSTRSKQ   72 (74)
T ss_pred             cHHHHHHHHHcCChhhcCchhhHH-HhchhHHHHHHHHHHHHHc-CCcccHHHHHhCccHHHHHHHHHhcccC
Confidence            467888999998999999999997 9999999999999999886 9999999999999999999999887654

>PRK06060 acyl-CoA synthetase; Validated

Probab=99.01  E-value=8.7e-10  Score=77.33  Aligned_cols=70  Identities=16%  Similarity=0.257  Sum_probs=63.6

Q ss_pred             hHHHHHHhhhCCC-CCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVD-PFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~-~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      .++..+++.++.+ +..++++.+|. ++|+|||+.+++..+|++.||+.+|...+.+..|+..+++++.+.+
T Consensus       549 ~v~~~~a~vl~~~~~~~i~~~~~f~-~lG~dSl~av~l~~~l~~~~g~~l~~~~~~~~pt~~~la~~l~~~~  619 (705)
T PRK06060        549 AVCAEAAKMLGEPDPWSVDQDLAFS-ELGFDSQMTVTLCKRLAAVTGLRLPETVGWDYGSISGLAQYLEAEL  619 (705)
T ss_pred             HHHHHHHHHhCCCChhhCCCCCChh-hcCchHHHHHHHHHHHHHHhCCCCCceeeecCCCHHHHHHHHHHHh
Confidence            3567778888885 67799999997 9999999999999999999999999999999999999999998765

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=98.90  E-value=4.5e-09  Score=78.02  Aligned_cols=70  Identities=16%  Similarity=0.158  Sum_probs=64.6

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      .+.+++++.++.++..++++++|. ++|.|||.+++++..|++.||+.+|..++.+..|++++++++.+..
T Consensus       852 ~l~~~~~~vl~~~~~~i~~~~~ff-~lGgdSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~~la~~l~~~~  921 (1389)
T TIGR03443       852 EIRDLWLELLPNRPATISPDDSFF-DLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAKEVDRLK  921 (1389)
T ss_pred             HHHHHHHHHhCCCccccCcCcchh-hcCccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhhh
Confidence            467888999998878899999997 9999999999999999999999999999999999999999997643

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=98.70  E-value=3.8e-08  Score=72.53  Aligned_cols=67  Identities=15%  Similarity=0.256  Sum_probs=62.3

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH   71 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~   71 (75)
                      .+.+++++.++++  .+.++++|. ++|.|||.++++...+++.||+.+|..++....|++++++++.+.
T Consensus       982 ~l~~~~~~~l~~~--~~~~~~~ff-~lGg~Sl~a~~l~~~l~~~~~~~l~~~~~~~~pti~~la~~l~~~ 1048 (1296)
T PRK10252        982 IIAAAFSSLLGCD--VVDADADFF-ALGGHSLLAMKLAAQLSRQFARQVTPGQVMVASTVAKLATLLDAE 1048 (1296)
T ss_pred             HHHHHHHHHhCCC--CCCCCcCHH-HcCCChHHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHHhcc
Confidence            4778899999886  789999997 999999999999999999999999999999999999999999765

>PRK12467 peptide synthase; Provisional

Probab=98.54  E-value=1.9e-07  Score=75.09  Aligned_cols=66  Identities=15%  Similarity=0.313  Sum_probs=61.4

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTAS   70 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~   70 (75)
                      .+.++++++++++  .+..+.+|+ ++|.|||.++.++..+++.||+++|..++.+..|++++++++..
T Consensus      3609 ~l~~i~~~vL~~~--~i~~~d~Ff-~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~ 3674 (3956)
T PRK12467       3609 QLAAIWADVLGVE--QVGVTDNFF-ELGGDSLLALQVLSRIRQSLGLKLSLRDLMSAPTIAELAGYSPL 3674 (3956)
T ss_pred             HHHHHHHHHhCCC--CCCCCcchh-cccchHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHhh
Confidence            5788899999985  589999997 99999999999999999999999999999999999999999865

>PRK12316 peptide synthase; Provisional

Probab=98.48  E-value=4.5e-07  Score=74.20  Aligned_cols=67  Identities=19%  Similarity=0.331  Sum_probs=61.4

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH   71 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~   71 (75)
                      ++.++++++++++  .+..+.+|+ ++|.|||.++.|+..+++.||++++..++....|++++++++...
T Consensus      5076 ~l~~i~~~vL~~~--~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~~ 5142 (5163)
T PRK12316       5076 QVAAIWAEVLQLE--RVGLDDNFF-ELGGHSLLAIQVTSRIQLELGLELPLRELFQTPTLAAFVELAAAA 5142 (5163)
T ss_pred             HHHHHHHHHhCCC--CCCCCCChh-hccchHHHHHHHHHHHHHHcCCCCCHHHHHcCCCHHHHHHHHHhc
Confidence            4678889999875  589999997 999999999999999999999999999999999999999999754

>PRK05691 peptide synthase; Validated

Probab=98.47  E-value=4.1e-07  Score=73.62  Aligned_cols=67  Identities=13%  Similarity=0.226  Sum_probs=61.9

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH   71 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~   71 (75)
                      ++.+++++.++++  .+..+.+|+ ++|.|||.++.++..+++.||+.+|..++....|++++++++...
T Consensus      4245 ~l~~iw~~vL~~~--~i~~~d~Ff-~lGg~Sl~a~~l~~~~~~~~~~~~~~~~~f~~~t~~~la~~~~~~ 4311 (4334)
T PRK05691       4245 TLATIWADVLKVE--RVGVHDNFF-ELGGHSLLATQIASRVQKALQRNVPLRAMFECSTVEELAEYIEGL 4311 (4334)
T ss_pred             HHHHHHHHHhCCC--cCCCCCchh-hcCCcHHHHHHHHHHHHHHhCCCccHHHHhcCCCHHHHHHHHhhh
Confidence            5788999999975  589999998 999999999999999999999999999999999999999999753

>PRK12467 peptide synthase; Provisional

Probab=98.44  E-value=4.8e-07  Score=72.97  Aligned_cols=67  Identities=15%  Similarity=0.259  Sum_probs=61.7

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH   71 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~   71 (75)
                      .+.+++++.++++  .+..+.+|+ ++|.|||.++.++..+++.||+.++..++.+..|++++++++...
T Consensus      1034 ~l~~i~~~vL~~~--~i~~~d~Ff-~lGgdSl~a~~l~~~~~~~~g~~l~~~~lf~~~t~~~la~~~~~~ 1100 (3956)
T PRK12467       1034 RLAAIWADVLKVE--RVGLTDNFF-ELGGHSLLATQVISRVRQRLGIQVPLRTLFEHQTLAGFAQAVAAQ 1100 (3956)
T ss_pred             HHHHHHHHHhCCC--CCCCCCCch-hccCccHHHHHHHHHHHHHhCCCcchHHhhccchHHHHHHHhhhh
Confidence            4678899999874  689999998 999999999999999999999999999999999999999998764

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=98.44  E-value=2.5e-07  Score=72.74  Aligned_cols=71  Identities=20%  Similarity=0.291  Sum_probs=65.3

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhC--CcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFG--FEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~--i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      .+.+++++.+|.+.+.++++.++..|||+||+..++++..++++|+  .+++++++..++|++++++|+.+..
T Consensus      1215 ~~l~vvae~tgyp~e~L~ld~d~eaDLgIDSIkrveil~~l~~~~~~~~e~~pe~l~~~rTl~~iv~~~~~~~ 1287 (2582)
T TIGR02813      1215 VMMEVVAEKTGYPTEMLELEMDMEADLGIDSIKRVEILGSVQEIINDLPELNPEDLAELRTLGEIVNYMQSKV 1287 (2582)
T ss_pred             HHHHHHHhhccCChHhcccccccccccCcchhhhHHhhhhhhhhccCCCCCChhhhcccccHHHHHHhhcccc
Confidence            4678999999999999999999999999999999999999999998  7888999999999999999986543

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>PRK05691 peptide synthase; Validated

Probab=98.42  E-value=6.4e-07  Score=72.57  Aligned_cols=67  Identities=16%  Similarity=0.166  Sum_probs=62.0

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH   71 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~   71 (75)
                      ++.+++++.+|++  .+..+++|+ ++|.|||.++.|+..++++||+.++..++.+..|+++++.++.+.
T Consensus      1642 ~l~~iw~~vL~~~--~i~~~d~Ff-~lGGdSl~a~~l~~~~~~~~~~~l~~~~~f~~~tl~~la~~i~~~ 1708 (4334)
T PRK05691       1642 QIAAIWREVLGLP--RVGLRDDFF-ALGGHSLLATQIVSRTRQACDVELPLRALFEASELGAFAEQVARI 1708 (4334)
T ss_pred             HHHHHHHHHhCCC--CCCCCCchH-HhcccHHHHHHHHHHHHHHhCCCcchhhhhcCCcHHHHHHHhhhh
Confidence            5778899999986  688999998 999999999999999999999999999999999999999998764

>PRK12316 peptide synthase; Provisional

Probab=98.31  E-value=1.4e-06  Score=71.54  Aligned_cols=67  Identities=19%  Similarity=0.268  Sum_probs=61.1

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH   71 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~   71 (75)
                      ++.+++++.++++  .+..+.+|. ++|.|||.+++++..+++.||+.++..++.+..|+++++..+...
T Consensus      2520 ~l~~iw~~vL~~~--~i~~~d~Ff-~lGgdSl~a~~l~~~~~~~~g~~l~~~~~f~~~ti~~la~~l~~~ 2586 (5163)
T PRK12316       2520 RLAAIWQAVLKVE--QVGLDDHFF-ELGGHSLLATQVVSRVRQDLGLEVPLRILFERPTLAAFAASLESG 2586 (5163)
T ss_pred             HHHHHHHHHhCCC--ccCCCCchh-hhcchHHHHHHHHHHHHHHhCCCcCHHHHhhCccHHHHhhhhhhh
Confidence            4678889999885  588999997 999999999999999999999999999999999999999988654

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=98.01  E-value=4.5e-06  Score=62.81  Aligned_cols=60  Identities=30%  Similarity=0.411  Sum_probs=51.2

Q ss_pred             HHHHHHhhhCC-CCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHH
Q 042770            3 IISVIKNFQNV-DPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMA   64 (75)
Q Consensus         3 v~~ii~~~~~~-~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l   64 (75)
                      ++..|+.++|+ |...++.++++. |||+|||+.+|+-..||++|++.++..++.. -|++.+
T Consensus      2009 LiatiA~IlGlrD~~~vn~~asLa-DLGlDSLMsvEikQtLER~~dlVLS~qEiRq-LT~~kL 2069 (2376)
T KOG1202|consen 2009 LIATIAHILGLRDLKAVNDDASLA-DLGLDSLMSVEIKQTLEREFDLVLSAQEIRQ-LTLRKL 2069 (2376)
T ss_pred             HHHHHHHHhcchhHhhccCCCchh-hccchhhhhHHHHHHHhhhhceeeeHHHHHH-HHHHHH
Confidence            56788899998 678999999996 9999999999999999999999999988733 344444

>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length

Probab=97.79  E-value=6.9e-05  Score=42.42  Aligned_cols=55  Identities=27%  Similarity=0.375  Sum_probs=48.6

Q ss_pred             ChHHHHHHhhhCC----CCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchh
Q 042770            1 DPIISVIKNFQNV----DPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEA   55 (75)
Q Consensus         1 ~~v~~ii~~~~~~----~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~   55 (75)
                      ++|++.+.+..|.    ....+++++++..|||++.-++.+++....++|+|.+..-++
T Consensus         6 ~~I~~fi~~~~~~~~~~~~~~it~dt~L~~DL~~~~dda~elm~~f~~~F~Vd~~~f~~   64 (111)
T PF07377_consen    6 QEIIEFIREENGPYLFFKKKPITPDTDLQEDLGLDGDDAEELMEDFFERFNVDLSDFDF   64 (111)
T ss_pred             HHHHHHHHHHcCcccccCcccCCCCCcHHHhcCCCHHHHHHHHHHHHHHhCCCcCccCH
Confidence            3688889999887    578999999999899999999999999999999999766544

Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.

>PF10501 Ribosomal_L50: Ribosomal subunit 39S; InterPro: IPR018305 This entry represents the L50 protein from the mitochondrial 39S ribosomal subunit

Probab=96.55  E-value=0.02  Score=32.45  Aligned_cols=67  Identities=24%  Similarity=0.308  Sum_probs=47.3

Q ss_pred             HHHHHHhhhCCCCCCC-CCCCCcccccCc-chhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHh
Q 042770            3 IISVIKNFQNVDPFKV-TTNGHFQIDLGL-DNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTAS   70 (75)
Q Consensus         3 v~~ii~~~~~~~~~~i-~~~~~l~~dlgl-DSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~   70 (75)
                      +.+..++.++.+.... ..+..+. +..+ |--.--.+..+|.+.+|..||+..+..+.|++++.+|+.+
T Consensus        13 i~e~~~e~~~~~~~~~~~~~~~~~-~~~l~D~~~KF~~lKrl~~~tGh~ipD~~L~~~~T~~dl~~~~~~   81 (112)
T PF10501_consen   13 IEESAKEVLGAEGFGSQSWNNDWL-DISLEDLQLKFAFLKRLQQLTGHRIPDSKLHSIHTVGDLLNFYEK   81 (112)
T ss_pred             HHHHHHHHhcccccccccCCcccc-ccccCCHHHHHHHHHHHHHHHCCCCCcHHHHhcCCHHHHHHHHHH
Confidence            3444555555543332 2344443 4444 3346678999999999999999999999999999999954

L50 appears to be a secondary RNA-binding protein []. The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units []. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [].; GO: 0005739 mitochondrion

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=96.13  E-value=0.032  Score=37.54  Aligned_cols=55  Identities=24%  Similarity=0.260  Sum_probs=42.5

Q ss_pred             CCCCCCc-ccccCcchhHHHHHHHHHHHHhCCcC-Ccch-hhhhccHHHHHHHHHhhh
Q 042770           18 VTTNGHF-QIDLGLDNLDFVEIVMALKEEFGFEI-PDNE-ADIINTINMAVNFTASHC   72 (75)
Q Consensus        18 i~~~~~l-~~dlglDSl~~v~l~~~le~~f~i~i-~~~~-~~~~~tv~~l~~~i~~~~   72 (75)
                      +..|+.+ .+.+|+|||..++|+.++.+.|++.= ..++ +...+++++.++.|.+..
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (386)
T TIGR02372        36 LTADLRIDEETLGLDSLLRLSLVTAVAGFFHLSDTGTEDYLLVRRRIGEWVDLIAHHS   93 (386)
T ss_pred             cccccccccccccccHHHHHHHHHHHHHHhcccccchhhhhhhhccHHHHHHHHHhcC
Confidence            6677777 46789999999999999999999842 2222 356678999999887543

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.94  E-value=0.058  Score=40.77  Aligned_cols=55  Identities=20%  Similarity=0.036  Sum_probs=48.4

Q ss_pred             CCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770           16 FKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH   71 (75)
Q Consensus        16 ~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~   71 (75)
                      ..++++++|. ++|.||+.++.+...+...+.+..|..-.....|+..+..-+.++
T Consensus       614 ~~~s~d~~fF-~lGgdSi~av~~~~~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~~  668 (1032)
T KOG1178|consen  614 AIVSPDSSFF-QLGGDSISAVRLSGLLRKKGYVEGPLGLIFKLLTIVNLESGIIRI  668 (1032)
T ss_pred             cccCCCcchh-hhcchhHHHHHHHHhhhhhheeccccccccchhhHHHHHHHHhhh
Confidence            4688999998 999999999999999999999999999988888888876655543

>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]

Probab=92.43  E-value=0.27  Score=34.92  Aligned_cols=69  Identities=17%  Similarity=0.272  Sum_probs=56.1

Q ss_pred             HHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhC-CcCCcchhhhhccHHHHHHHHHhhhc
Q 042770            3 IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFG-FEIPDNEADIINTINMAVNFTASHCQ   73 (75)
Q Consensus         3 v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~-i~i~~~~~~~~~tv~~l~~~i~~~~~   73 (75)
                      ++.++..++. ..-++..+++|+ .-|.-|.+.+.|+..+....| .++...++.--.|+++.++.+.+++.
T Consensus       327 ~~~iw~~il~-kv~~v~~~tdff-~sga~s~dv~rlveeik~~~~g~ele~~~iy~~~t~g~~i~~~ir~lr  396 (881)
T KOG2452|consen  327 VRSVWQRILP-KVLEVEDSTDFF-KSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRKLR  396 (881)
T ss_pred             HHHHHHHhcc-hheeecccchHh-hcCccchhHHHHHHHHHHhCCcceeccCceEeccchhhHHHHHHHHhc
Confidence            4444444442 124678899998 899999999999999998887 89999999999999999999988764

>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease

Probab=89.84  E-value=0.67  Score=22.72  Aligned_cols=27  Identities=22%  Similarity=0.468  Sum_probs=18.0

Q ss_pred             ccCcchhHHHHHHHHHHHHhCCcCCcc
Q 042770           27 DLGLDNLDFVEIVMALKEEFGFEIPDN   53 (75)
Q Consensus        27 dlglDSl~~v~l~~~le~~f~i~i~~~   53 (75)
                      .-+++++..-.+...+|++||+++...
T Consensus        15 ~~dl~~vT~k~vr~~Le~~~~~dL~~~   41 (54)
T PF08766_consen   15 EADLDTVTKKQVREQLEERFGVDLSSR   41 (54)
T ss_dssp             TS-GGG--HHHHHHHHHHH-SS--SHH
T ss_pred             hCCHhHhhHHHHHHHHHHHHCCCcHHH
Confidence            457889999999999999999988743

This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	75
2dnw_A	99	Solution Structure Of Rsgi Ruh-059, An Acp Domain O		4e-13
4dxe_H	101	2.52 Angstrom Resolution Crystal Structure Of The A		2e-11
1x3o_A	80	Crystal Structure Of The Acyl Carrier Protein From		6e-11
2l0q_A	80	Nmr Solution Structure Of Vibrio Harveyi Acyl Carri		2e-10
2k92_A	77	Structural Modification Of Acyl Carrier Protein By		2e-10
1t8k_A	77	Crystal Structure Of Apo Acyl Carrier Protein From		3e-10
1l0h_A	78	Crystal Structure Of Butyryl-Acp From E.Coli Length		3e-10
3ejb_A	97	Crystal Structure Of P450bioi In Complex With Tetra		3e-10
2l3v_A	79	Nmr Structure Of Acyl Carrier Protein From Brucella		6e-10
1l0i_A	78	Crystal Structure Of Butyryl-Acp I62m Mutant Length		6e-10
2ehs_A	77	Crystal Structure Of Acyl Carrier Protein From Aqui		8e-10
3gzl_A	81	Crystal Structure Of Holo Pfacp Disulfide-Linked Di		4e-08
2fq0_A	79	Solution Structure Of Major Conformation Of Holo-Ac		5e-08
2x2b_A	78	Crystal Structure Of Malonyl-Acp (Acyl Carrier Prot		6e-08
1hy8_A	76	Solution Structure Of B. Subtilis Acyl Carrier Prot		6e-08
1f80_D	81	Holo-(Acyl Carrier Protein) Synthase In Complex Wit		1e-07
2lol_A	81	Nmr Structure Of An Acyl-Carrier Protein From Ricke		2e-07
2qnw_A	82	Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier		4e-07
2ava_A	82	Solution Structure Of Stearoyl-Acyl Carrier Protein		7e-05
2l4b_A	88	Solution Structure Of A Putative Acyl Carrier Prote		8e-05
2xz0_D	82	The Structure Of The 2:1 (Partially Occupied) Compl		1e-04
2kwl_A	84	Solution Structure Of Acyl Carrier Protein From Bor		2e-04

>pdb|2DNW|A Chain A, Solution Structure Of Rsgi Ruh-059, An Acp Domain Of Acyl Carrier Protein, Mitochondrial [precursor] From Human Cdna Length = 99

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 49/69 (71%)
Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
          D ++ V+K +  +DP K++ N HF  DLGLD+LD VEI+MA+++EFGFEIPD +A+ +  
Sbjct: 18 DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC 77
Query: 61 INMAVNFTA 69
              V++ A
Sbjct: 78 PQEIVDYIA 86

>pdb|4DXE|H Chain H, 2.52 Angstrom Resolution Crystal Structure Of The Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier Protein (Acp) Protein-Protein Complex From Staphylococcus Aureus Subsp. Aureus Col Length = 101

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 45/70 (64%)
Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
          D +  +I +   VD  KVT +  F+ DLG D+LD  E+VM L++EFG EIPD EA+ INT
Sbjct: 29 DKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINT 88
Query: 61 INMAVNFTAS 70
          +  AV F  S
Sbjct: 89 VGDAVKFINS 98

>pdb|1X3O|A Chain A, Crystal Structure Of The Acyl Carrier Protein From Thermus Thermophilus Hb8 Length = 80

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
          + + +VI +   V+P KVT    F  DLG D+LD VE++M L++EFG EI D EA+ I T
Sbjct: 8  EKVKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEKIRT 67
Query: 61 INMAVNFTASHC 72
          +  AV +  +  
Sbjct: 68 VKDAVEYIKAKL 79

>pdb|2L0Q|A Chain A, Nmr Solution Structure Of Vibrio Harveyi Acyl Carrier Protein (Acp) Length = 80

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 39/59 (66%)
Query: 13 VDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71
          VD  +V     F  DLG D+LD VE+VMAL+EEF  EIPD EA+ I T+  A+++  SH
Sbjct: 21 VDEAEVKNEASFVDDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYVNSH 79

>pdb|2K92|A Chain A, Structural Modification Of Acyl Carrier Protein By Butyryl Group Length = 77

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
          + +  +I     V   +VT N  F  DLG D+LD VE+VMAL+EEF  EIPD EA+ I T
Sbjct: 5  ERVKKIIGQQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 64
Query: 61 INMAVNFTASH 71
          +  A+++   H
Sbjct: 65 VQAAIDYINGH 75

>pdb|1T8K|A Chain A, Crystal Structure Of Apo Acyl Carrier Protein From E. Coli Length = 77

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 39/59 (66%)
Query: 13 VDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71
          V   +VT N  F  DLG D+LD VE+VMAL+EEF  EIPD EA+ I T+  A+++   H
Sbjct: 17 VKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 75

>pdb|1L0H|A Chain A, Crystal Structure Of Butyryl-Acp From E.Coli Length = 78

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
          + +  +I     V   +VT N  F  DLG D+LD VE+VMAL+EEF  EIPD EA+ I T
Sbjct: 6  ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 65
Query: 61 INMAVNFTASH 71
          +  A+++   H
Sbjct: 66 VQAAIDYINGH 76

>pdb|3EJB|A Chain A, Crystal Structure Of P450bioi In Complex With Tetradecanoic Acid Ligated Acyl Carrier Protein Length = 97

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
          + +  +I     V   +VT N  F  DLG D+LD VE+VMAL+EEF  EIPD EA+ I T
Sbjct: 25 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 84
Query: 61 INMAVNFTASH 71
          +  A+++   H
Sbjct: 85 VQAAIDYINGH 95

>pdb|2L3V|A Chain A, Nmr Structure Of Acyl Carrier Protein From Brucella Melitensis Length = 79

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 37/56 (66%)
Query: 12 NVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNF 67
           VD  KVT    F  DLG D+LD VE+VMA +EEFG EIPD+ A+ I T+  AV F
Sbjct: 18 GVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILTVGDAVKF 73

>pdb|1L0I|A Chain A, Crystal Structure Of Butyryl-Acp I62m Mutant Length = 78

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
          + +  +I     V   +VT N  F  DLG D+LD VE+VMAL+EEF  EIPD EA+ + T
Sbjct: 6  ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTT 65
Query: 61 INMAVNFTASH 71
          +  A+++   H
Sbjct: 66 VQAAIDYINGH 76

>pdb|2EHS|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex Aeolicus (Form 1) Length = 77

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
          + +  +I     V+  K+T    F  DLG D+LD VE++MA +EEFG EIPD +A+ I T
Sbjct: 4  ERVKEIIAEQLGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQT 63
Query: 61 INMAVNFTASHCQG 74
          +   +N+      G
Sbjct: 64 VGDVINYLKEKVGG 77

>pdb|3GZL|A Chain A, Crystal Structure Of Holo Pfacp Disulfide-Linked Dimer Length = 81

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
          D I  +I    +V+  K+  N +F  DLG D+LD VE++MAL+E+F   I D +A  INT
Sbjct: 8  DDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINT 67
Query: 61 INMAVNF 67
          +  A+++
Sbjct: 68 VQDAIDY 74

>pdb|2FQ0|A Chain A, Solution Structure Of Major Conformation Of Holo-Acyl Carrier Protein From Malaria Parasite Plasmodium Falciparum Length = 79

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
          D I  +I    +V+  K+  N +F  DLG D+LD VE++MAL+E+F   I D +A  INT
Sbjct: 6  DDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINT 65
Query: 61 INMAVNF 67
          +  A+++
Sbjct: 66 VQDAIDY 72

>pdb|2X2B|A Chain A, Crystal Structure Of Malonyl-Acp (Acyl Carrier Protein) From Bacillus Subtilis Length = 78

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
          + +  +I +   VD   V     F+ DLG D+LD VE+VM L++EF  EI D +A+ I T
Sbjct: 7  ERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEKIAT 66
Query: 61 INMAVNF 67
          +  AVN+
Sbjct: 67 VGDAVNY 73

>pdb|1HY8|A Chain A, Solution Structure Of B. Subtilis Acyl Carrier Protein Length = 76

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
          + +  +I +   VD   V     F+ DLG D+LD VE+VM L++EF  EI D +A+ I T
Sbjct: 5  ERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEKIAT 64
Query: 61 INMAVNF 67
          +  AVN+
Sbjct: 65 VGDAVNY 71

>pdb|1F80|D Chain D, Holo-(Acyl Carrier Protein) Synthase In Complex With Holo- (Acyl Carrier Protein) Length = 81

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 3  IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
          +  +I +   VD   V     F+ DLG D LD VE+VM L++EF  EI D +A+ I T+ 
Sbjct: 12 VTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVG 71
Query: 63 MAVNF 67
           AVN+
Sbjct: 72 DAVNY 76

>pdb|2LOL|A Chain A, Nmr Structure Of An Acyl-Carrier Protein From Rickettsia Prowazekii, Seattle Structural Genomics Center For Infectious Disease (Ssgcid) Length = 81

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 2  PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTI 61
           +I ++    N D   +TT+  F  DL  D+LD VE++MA++ E+G +IPD+EA  I T+
Sbjct: 10 KVIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDEATKIKTV 69
Query: 62 NMAVNF 67
          +  + +
Sbjct: 70 SDVIKY 75

>pdb|2QNW|A Chain A, Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier Protein Length = 82

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 6  VIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAV 65
          V+ +   VD  ++    +F  DL  D+LD VE+VMA +E+FG  IPD EA  I T+  A+
Sbjct: 15 VVADQLGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKIATVQDAL 74
Query: 66 NF 67
          ++
Sbjct: 75 SY 76

>pdb|2AVA|A Chain A, Solution Structure Of Stearoyl-Acyl Carrier Protein Length = 82

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 18 VTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVN 66
          VT +  F   LG D+LD VEIVM L+EEFG  + +++A  I+TI  A +
Sbjct: 25 VTADSEFS-KLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAAD 72

>pdb|2L4B|A Chain A, Solution Structure Of A Putative Acyl Carrier Protein From Anaplasma Phagocytophilum. Seattle Structural Genomics Center For Infectious Disease Target Anpha.01018.A Length = 88

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 19 TTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71
          TTN     D  LD+LDFV+++M+L+E F  EI D +A  + T++    + AS 
Sbjct: 34 TTN--LAKDFNLDSLDFVDLIMSLEERFSLEISDEDAQKLETVDDICRYIASK 84

>pdb|2XZ0|D Chain D, The Structure Of The 2:1 (Partially Occupied) Complex Between Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean) And Acyl Carrier Protein. Length = 82

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 18 VTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVN 66
          VT +  F   LG D LD VEIVM L+EEFG  + +++A  I+TI  A +
Sbjct: 25 VTADSEFS-KLGADXLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAAD 72

>pdb|2KWL|A Chain A, Solution Structure Of Acyl Carrier Protein From Borrelia Burgdorferi Length = 84

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 17 KVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71
          ++TT+  F  DL  D+LD  E++  L+E F  +IP+NEA+   T+   VNF    
Sbjct: 28 EITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENEANEFETVGDVVNFIKKR 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	75
2dnw_A	99	Acyl carrier protein; ACP, fatty acid biosynthesis	9e-24
2l4b_A	88	Acyl carrier protein; infectious disease, human gr	7e-21
2ava_A	82	ACP I, acyl carrier protein I, chloroplast; four-h	1e-20
3ejb_A	97	Acyl carrier protein; protein-protein complex, cyt	1e-19
3ce7_A	107	Specific mitochodrial acyl carrier protein; malari	3e-19
1l0i_A	78	Acyl carrier protein; acyl chain binding, fatty ac	4e-19
2qnw_A	82	Acyl carrier protein; malaria, SGC, structural gen	7e-19
1x3o_A	80	Acyl carrier protein; structural genomics, riken s	1e-18
2l3v_A	79	ACP, acyl carrier protein; structural genomi seatt	2e-18
2lol_A	81	ACP, acyl carrier protein; lipid transport; NMR {R	2e-18
1klp_A	115	ACP, ACPM, meromycolate extension acyl carrier pro	1e-17
2kwl_A	84	ACP, acyl carrier protein; structural genomics, se	1e-17
2ehs_A	77	ACP, acyl carrier protein; lipid transport, struct	2e-17
1vku_A	100	Acyl carrier protein; TM0175, structural genomics,	2e-17
4dxe_H	101	ACP, acyl carrier protein; acyl-carrier-protein sy	2e-17
3gzm_A	81	Acyl carrier protein; helix bundle, phosphopanteth	2e-17
2cnr_A	82	FAS, ACP, acyl carrier protein; polykdetide, phosp	5e-17
2cgq_A	113	Acyl carrier protein ACPA; RV0033, protein transpo	5e-17
2kw2_A	101	Specialized acyl carrier protein; structural genom	6e-17
1f80_D	81	Acyl carrier protein; transferase; HET: PN2; 2.30A	2e-13
2lte_A	103	Specialized acyl carrier protein; APO protein, tra	2e-11
1nq4_A	95	Oxytetracycline polyketide synthase acyl carrier p	4e-08
2jq4_A	105	AGR_C_4658P, hypothetical protein ATU2571; ATC2521	2e-07
1af8_A	86	Actinorhodin polyketide synthase acyl carrier Pro;	4e-07
1or5_A	83	Acyl carrier protein; ACP, biosynthesis, frenolici	1e-06
2lki_A	105	Putative uncharacterized protein; helical bundle,	2e-06
2amw_A	83	Hypothetical protein NE2163; all helical protein,	4e-05
2kci_A	87	Putative acyl carrier protein; alpha, ACP, PCP, st	5e-05
2kr5_A	89	PKS, aflatoxin biosynthesis polyketide synthase; a	2e-04
2l22_A	212	Mupirocin didomain acyl carrier protein; biosynthe	4e-04

>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 84.8 bits (210), Expect = 9e-24
 Identities = 31/69 (44%), Positives = 48/69 (69%)

Query: 3  IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
          ++ V+K +  +DP K++ N HF  DLGLD+LD VEI+MA+++EFGFEIPD +A+ +    
Sbjct: 20 VLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQ 79

Query: 63 MAVNFTASH 71
            V++ A  
Sbjct: 80 EIVDYIADK 88

>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum} Length = 88

 Score = 77.0 bits (190), Expect = 7e-21
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 3  IISVIKNFQNV---DPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIIN 59
          ++  +     +       ++   +   D  LD+LDFV+++M+L+E F  EI D +A  + 
Sbjct: 13 VMESVIGCLKLNDEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISDEDAQKLE 72

Query: 60 TINMAVNFTASH 71
          T++    + AS 
Sbjct: 73 TVDDICRYIASK 84

>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C* Length = 82

 Score = 76.6 bits (189), Expect = 1e-20
 Identities = 23/69 (33%), Positives = 35/69 (50%)

Query: 3  IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
          +  ++K    +    V T       LG D+LD VEIVM L+EEFG  + +++A  I+TI 
Sbjct: 9  VSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQ 68

Query: 63 MAVNFTASH 71
           A +     
Sbjct: 69 QAADVIEGL 77

>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A* Length = 97

 Score = 74.4 bits (183), Expect = 1e-19
 Identities = 31/69 (44%), Positives = 42/69 (60%)

Query: 3  IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
          +  +I     V   +VT N  F  DLG D+LD VE+VMAL+EEF  EIPD EA+ I T+ 
Sbjct: 27 VKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQ 86

Query: 63 MAVNFTASH 71
           A+++   H
Sbjct: 87 AAIDYINGH 95

>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma} Length = 107

 Score = 73.5 bits (180), Expect = 3e-19
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 1  DPIISVIKNF----QNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEAD 56
          + I+ + + F    + V P         + D   D LD VE V+ ++E F   +PD  AD
Sbjct: 22 NYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDEVAD 81

Query: 57 IINTINMAVNFTASH 71
             T+    +F  S 
Sbjct: 82 NFQTLQEIADFVVSE 96

>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A Length = 78

 Score = 72.3 bits (178), Expect = 4e-19
 Identities = 30/71 (42%), Positives = 43/71 (60%)

Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
          + +  +I     V   +VT N  F  DLG D+LD VE+VMAL+EEF  EIPD EA+ + T
Sbjct: 6  ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTT 65

Query: 61 INMAVNFTASH 71
          +  A+++   H
Sbjct: 66 VQAAIDYINGH 76

>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii} Length = 82

 Score = 71.9 bits (177), Expect = 7e-19
 Identities = 25/69 (36%), Positives = 39/69 (56%)

Query: 3  IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
          +  V+ +   VD  ++    +F  DL  D+LD VE+VMA +E+FG  IPD EA  I T+ 
Sbjct: 12 VKDVVADQLGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKIATVQ 71

Query: 63 MAVNFTASH 71
           A+++    
Sbjct: 72 DALSYIEKA 80

>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus} Length = 80

 Score = 71.6 bits (176), Expect = 1e-18
 Identities = 30/69 (43%), Positives = 43/69 (62%)

Query: 3  IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
          + +VI +   V+P KVT    F  DLG D+LD VE++M L++EFG EI D EA+ I T+ 
Sbjct: 10 VKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEKIRTVK 69

Query: 63 MAVNFTASH 71
           AV +  + 
Sbjct: 70 DAVEYIKAK 78

>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis} Length = 79

 Score = 70.8 bits (174), Expect = 2e-18
 Identities = 31/69 (44%), Positives = 40/69 (57%)

Query: 3  IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
          +  ++     VD  KVT    F  DLG D+LD VE+VMA +EEFG EIPD+ A+ I T+ 
Sbjct: 9  VKKIVVEHLGVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILTVG 68

Query: 63 MAVNFTASH 71
           AV F    
Sbjct: 69 DAVKFIDKA 77

>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str} Length = 81

 Score = 70.8 bits (174), Expect = 2e-18
 Identities = 24/69 (34%), Positives = 41/69 (59%)

Query: 3  IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
          +I ++    N D   +TT+  F  DL  D+LD VE++MA++ E+G +IPD+EA  I T++
Sbjct: 11 VIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDEATKIKTVS 70

Query: 63 MAVNFTASH 71
            + +    
Sbjct: 71 DVIKYIKER 79

>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1 Length = 115

 Score = 69.9 bits (171), Expect = 1e-17
 Identities = 18/69 (26%), Positives = 36/69 (52%)

Query: 3  IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
          I  +I+    ++P ++T    F  DL +D+L  VEI +  ++++G +IPD +   + T+ 
Sbjct: 12 IAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVG 71

Query: 63 MAVNFTASH 71
            V +    
Sbjct: 72 DVVAYIQKL 80

>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi} Length = 84

 Score = 68.5 bits (168), Expect = 1e-17
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 3  IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
          + S+I    +    ++TT+  F  DL  D+LD  E++  L+E F  +IP+NEA+   T+ 
Sbjct: 14 VRSIISEQLDKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENEANEFETVG 73

Query: 63 MAVNFTASH 71
            VNF    
Sbjct: 74 DVVNFIKKR 82

>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A Length = 77

 Score = 68.4 bits (168), Expect = 2e-17
 Identities = 28/72 (38%), Positives = 41/72 (56%)

Query: 3  IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
          +  +I     V+  K+T    F  DLG D+LD VE++MA +EEFG EIPD +A+ I T+ 
Sbjct: 6  VKEIIAEQLGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQTVG 65

Query: 63 MAVNFTASHCQG 74
            +N+      G
Sbjct: 66 DVINYLKEKVGG 77

>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1 Length = 100

 Score = 69.0 bits (169), Expect = 2e-17
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
             + +       D   V     F+ +LG D++D +++VM  ++EF   I D E   I  
Sbjct: 20 AKFVEIASEKMGKDLETVDEENTFK-ELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRK 78

Query: 61 INMAVNFTASH 71
          +   ++     
Sbjct: 79 VKDLIDIVIKK 89

>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus} Length = 101

 Score = 69.0 bits (169), Expect = 2e-17
 Identities = 34/73 (46%), Positives = 46/73 (63%)

Query: 1   DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
           D +  +I +   VD  KVT +  F+ DLG D+LD  E+VM L++EFG EIPD EA+ INT
Sbjct: 29  DKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINT 88

Query: 61  INMAVNFTASHCQ 73
           +  AV F  S  +
Sbjct: 89  VGDAVKFINSLEK 101

>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} PDB: 3gzl_A* 2fq0_A* 2fq2_A* Length = 81

 Score = 68.1 bits (167), Expect = 2e-17
 Identities = 27/73 (36%), Positives = 44/73 (60%)

Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
          D I  +I    +V+  K+  N +F  DLG D+LD VE++MAL+E+F   I D +A  INT
Sbjct: 8  DDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINT 67

Query: 61 INMAVNFTASHCQ 73
          +  A+++   + +
Sbjct: 68 VQDAIDYIEKNNK 80

>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A* Length = 82

 Score = 67.4 bits (165), Expect = 5e-17
 Identities = 18/69 (26%), Positives = 34/69 (49%)

Query: 3  IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
          +  ++     +    V  +  F  DL +D+L  VE+V+A +E F  +IPD++   + T+ 
Sbjct: 12 LAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVG 71

Query: 63 MAVNFTASH 71
           A  +   H
Sbjct: 72 DATKYILDH 80

>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis} Length = 113

 Score = 68.0 bits (166), Expect = 5e-17
 Identities = 15/61 (24%), Positives = 24/61 (39%)

Query: 11 QNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTAS 70
                 +T N     DLG D+L   +++  L++EF   I   +A  I T+       A 
Sbjct: 38 ILRTDRGITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNIKTVGDVYTSVAV 97

Query: 71 H 71
           
Sbjct: 98 W 98

>2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A Length = 101

 Score = 67.5 bits (165), Expect = 6e-17
 Identities = 16/64 (25%), Positives = 31/64 (48%)

Query: 3  IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
          + ++I    ++    +T   H   DLG+D+LDF++I  A+ + FG ++P  +        
Sbjct: 8  VATIIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWTQEVNDG 67

Query: 63 MAVN 66
           A  
Sbjct: 68 KATT 71

>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A Length = 81

 Score = 58.2 bits (141), Expect = 2e-13
 Identities = 27/69 (39%), Positives = 39/69 (56%)

Query: 3  IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
          +  +I +   VD   V     F+ DLG D LD VE+VM L++EF  EI D +A+ I T+ 
Sbjct: 12 VTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVG 71

Query: 63 MAVNFTASH 71
           AVN+  + 
Sbjct: 72 DAVNYIQNQ 80

>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa} Length = 103

 Score = 54.0 bits (129), Expect = 2e-11
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
          D +++V+     V   +++ +   + DL  D+L   E+ + L++EFG    D+E D++ T
Sbjct: 29 DHLLTVLSVASGVPKEEISRDSRME-DLAFDSLVVSELSLKLRKEFGVTGVDDELDLLET 87

Query: 61 INMAVNFTASH 71
          ++        H
Sbjct: 88 VDELFQLVEKH 98

>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1 Length = 95

 Score = 44.9 bits (106), Expect = 4e-08
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 13 VDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71
          +D      +  F   LG D+L  +  V  ++ ++G ++ D+  +   T    +  T + 
Sbjct: 23 IDLGGDVEDVAFD-ALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNAS 80

>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1 Length = 105

 Score = 43.4 bits (102), Expect = 2e-07
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 6/60 (10%)

Query: 12 NVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADI-----INTINMAVN 66
                +          GL +   V++++ ++E F  E PDN  +      I  I   V 
Sbjct: 38 PTPVDTIADEADL-YAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVK 96

>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A* Length = 86

 Score = 42.1 bits (99), Expect = 4e-07
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 27 DLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71
          D+G D+L  +E    L+  +G  IPD+ A  ++T    ++     
Sbjct: 37 DIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGA 81

>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1 Length = 83

 Score = 41.0 bits (96), Expect = 1e-06
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 27 DLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71
          DLG D+L  +E    L++ +G  + D     + T    ++   + 
Sbjct: 35 DLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTT 79

>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea} Length = 105

 Score = 41.2 bits (96), Expect = 2e-06
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 24  FQIDLGLDNLDFVEIVMALKEEFGFEIPDNE--ADIINTINMAVNFTASH 71
                 LD++  V ++ AL+E F F + D+E  A    T+     F    
Sbjct: 53  LGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQTFETLGSLALFVEHK 102

>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus} Length = 89

 Score = 35.2 bits (81), Expect = 2e-04
 Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 1  DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIP 51
          D ++ V+     +   ++T + +F  D+G+D+L  + I    +E+ G ++ 
Sbjct: 14 DAVMRVVSEESGIALEELTDDSNFA-DMGIDSLSSMVIGSRFREDLGLDLG 63

>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} Length = 212

 Score = 35.7 bits (82), Expect = 4e-04
 Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 13  VDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIP 51
           +DP ++ +   F  DLG+D++   + +  +   F  ++ 
Sbjct: 145 LDPGQLRSGAQFL-DLGMDSVTGTQWMRGVSRHFSIQLA 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
2kci_A	87	Putative acyl carrier protein; alpha, ACP, PCP, st	99.9
2kjs_A	87	Putative acyl carrier protein; alpha, ACP, PNS, st	99.9
2l9f_A	102	CALE8, meacp; transferase, acyl carrier protein; N	99.88
3gzm_A	81	Acyl carrier protein; helix bundle, phosphopanteth	99.87
4dxe_H	101	ACP, acyl carrier protein; acyl-carrier-protein sy	99.86
3ejb_A	97	Acyl carrier protein; protein-protein complex, cyt	99.86
1vku_A	100	Acyl carrier protein; TM0175, structural genomics,	99.85
2lol_A	81	ACP, acyl carrier protein; lipid transport; NMR {R	99.84
2qnw_A	82	Acyl carrier protein; malaria, SGC, structural gen	99.84
1l0i_A	78	Acyl carrier protein; acyl chain binding, fatty ac	99.84
2l4b_A	88	Acyl carrier protein; infectious disease, human gr	99.84
2kwl_A	84	ACP, acyl carrier protein; structural genomics, se	99.84
3ce7_A	107	Specific mitochodrial acyl carrier protein; malari	99.83
2cnr_A	82	FAS, ACP, acyl carrier protein; polykdetide, phosp	99.83
2ava_A	82	ACP I, acyl carrier protein I, chloroplast; four-h	99.83
2lki_A	105	Putative uncharacterized protein; helical bundle,	99.83
2kw2_A	101	Specialized acyl carrier protein; structural genom	99.83
1f80_D	81	Acyl carrier protein; transferase; HET: PN2; 2.30A	99.83
2dnw_A	99	Acyl carrier protein; ACP, fatty acid biosynthesis	99.83
2amw_A	83	Hypothetical protein NE2163; all helical protein,	99.83
1dv5_A	80	APO-DCP, APO-D-alanyl carrier protein; 3-helix bun	99.82
1af8_A	86	Actinorhodin polyketide synthase acyl carrier Pro;	99.82
1klp_A	115	ACP, ACPM, meromycolate extension acyl carrier pro	99.82
1x3o_A	80	Acyl carrier protein; structural genomics, riken s	99.82
2lte_A	103	Specialized acyl carrier protein; APO protein, tra	99.69
1or5_A	83	Acyl carrier protein; ACP, biosynthesis, frenolici	99.81
2ehs_A	77	ACP, acyl carrier protein; lipid transport, struct	99.8
2cgq_A	113	Acyl carrier protein ACPA; RV0033, protein transpo	99.8
1nq4_A	95	Oxytetracycline polyketide synthase acyl carrier p	99.8
2jq4_A	105	AGR_C_4658P, hypothetical protein ATU2571; ATC2521	99.77
2l3v_A	79	ACP, acyl carrier protein; structural genomi seatt	99.76
1fh1_A	92	NODF, nodulation protein F; ROOT nodulation factor	99.74
2cg5_B	91	Fatty acid synthase; transferase-hydrolase complex	99.72
2kr5_A	89	PKS, aflatoxin biosynthesis polyketide synthase; a	99.71
2afd_A	88	Protein ASL1650; twisted antiparallel helical bund	99.7
2liu_A	99	CURA; holo state, transferase; NMR {Lyngbya majusc	99.66
2ju1_A	95	Erythronolide synthase; carrier protein domain, mo	99.65
2l22_A	212	Mupirocin didomain acyl carrier protein; biosynthe	99.62
4i4d_A	93	Peptide synthetase NRPS type II-PCP; structural ge	99.62
1dny_A	91	Non-ribosomal peptide synthetase peptidyl carrier	99.58
2l22_A	212	Mupirocin didomain acyl carrier protein; biosynthe	99.57
2cq8_A	110	10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH	99.31
3tej_A	329	Enterobactin synthase component F; nonribosomal pe	99.26
2fq1_A	287	Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy	99.07
2jgp_A	520	Tyrocidine synthetase 3; multifunctional enzyme, a	99.03
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	98.77
4f6l_B	508	AUSA reductase domain protein; thioester reductase	98.75
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	98.73
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	98.67
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	98.32
2px6_A	316	Thioesterase domain; thioesaterse domain, orlistat	96.16
1dd4_C	40	50S ribosomal protein L7/L12; dimer formation, fle	91.56
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	90.38
1zav_U	30	50S ribosomal protein L7/L12; ribosome structure a	88.21

>2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora}

Probab=99.88  E-value=1e-22  Score=112.85  Aligned_cols=73  Identities=8%  Similarity=0.107  Sum_probs=67.8

Q ss_pred             ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhh--ccHHHHHHHHHhhhcC
Q 042770            1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADII--NTINMAVNFTASHCQG   74 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~--~tv~~l~~~i~~~~~~   74 (75)
                      ++|++++++.+|++++.++|+++|.+|||+|||+.++|++.+|++||+++|.+ ..++  .||+++++||.++.+.
T Consensus        17 ~~V~~ilaE~lev~~e~Vtpda~l~dDLglDSLd~VeLVm~lE~~fGi~ipd~-~e~~~~~TV~d~vdyI~~~~~~   91 (102)
T 2l9f_A           17 ELVRHLVAERAELPVEVLRDDSRFLDDLHMSSITVGQLVNEAARAMGLSAVAM-PTNFATATVREMAEALEARERE   91 (102)
T ss_dssp             HHHHHHHHHHTTSCSSSCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCSTTSS-CSCCTTCBHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHcCCCcchhhhcCCcHHHHHHHHHHHHHHhCCCCCcc-HHHHHHccHHHHHHHHHHhhcc
Confidence            36899999999999999999999999999999999999999999999999987 6667  9999999999998753

>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*

Probab=99.87  E-value=1.8e-22  Score=107.61  Aligned_cols=72  Identities=36%  Similarity=0.573  Sum_probs=68.2

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ   73 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~   73 (75)
                      ++++++++.+++++++++++++|.+++|+||+++++++..+|++||+++|..++.++.|++++++|+.++++
T Consensus         9 ~l~~ii~~~l~~~~~~i~~d~~l~~dlg~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~~   80 (81)
T 3gzm_A            9 DIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYIEKNNK   80 (81)
T ss_dssp             HHHHHHHHHHTCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhCcCHHHCCCCCcchhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHHhc
Confidence            688999999999999999999996699999999999999999999999999999999999999999998865

>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}

Probab=99.86  E-value=3.4e-22  Score=111.00  Aligned_cols=72  Identities=47%  Similarity=0.665  Sum_probs=66.3

Q ss_pred             ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      +++++++++.+++++++++++++|..++|||||++++|+..+|++||++||++++.++.|++++++||.+++
T Consensus        29 ~~l~~iiae~l~~~~~~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~Tv~dl~~~I~~~~  100 (101)
T 4dxe_H           29 DKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINSLE  100 (101)
T ss_dssp             HHHHHHHHHTTCCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCBHHHHHHHHC---
T ss_pred             HHHHHHHHHHHCcChhhCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHcc
Confidence            368899999999999999999999679999999999999999999999999999999999999999998765

>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*

Probab=99.86  E-value=5.8e-22  Score=109.25  Aligned_cols=71  Identities=44%  Similarity=0.631  Sum_probs=67.4

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      ++++++++.+++++++++++++|.+++|+|||++++++..+|++||+++|.+++.++.|++++++||.+++
T Consensus        26 ~l~~iia~~l~~~~~~i~~d~~l~~dLGlDSL~~vel~~~lE~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~   96 (97)
T 3ejb_A           26 RVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGHQ   96 (97)
T ss_dssp             HHHHHHHHHSCCCTTTSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHCcCHHHCCCCCCchhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHHhc
Confidence            68899999999999999999999779999999999999999999999999999999999999999998875

>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1

Probab=99.85  E-value=2.8e-21  Score=107.13  Aligned_cols=71  Identities=21%  Similarity=0.432  Sum_probs=67.8

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ   73 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~   73 (75)
                      ++++++++.+++++++++++++| .++|+|||++++|+..+|++||++||..++.++.|++++++||.++++
T Consensus        21 ~l~~ila~~l~v~~~~I~~d~~L-~dLGlDSL~~veL~~~LE~~fgi~i~~~~l~~~~TV~~L~~~I~~~~~   91 (100)
T 1vku_A           21 KFVEIASEKMGKDLETVDEENTF-KELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLIDIVIKKLE   91 (100)
T ss_dssp             HHHHHHHHTTCCCCCSCCTTSBT-TTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHCCCCCCH-HHcCCchHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHHhh
Confidence            58899999999999999999999 699999999999999999999999999999999999999999998764

>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}

Probab=99.84  E-value=5.8e-21  Score=101.39  Aligned_cols=71  Identities=34%  Similarity=0.552  Sum_probs=67.3

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      ++++++++.+++++++++++++|..++|+||+++++++..+|++||+++|..++.++.|++++++++.+++
T Consensus        10 ~l~~ii~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~   80 (81)
T 2lol_A           10 KVIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDEATKIKTVSDVIKYIKERQ   80 (81)
T ss_dssp             HHHHHHHHHSCCCTTTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCCCCGGGGGGSSSHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCChhhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHHHHHHhc
Confidence            57899999999999999999999669999999999999999999999999999999999999999998875

>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}

Probab=99.84  E-value=3.1e-21  Score=102.89  Aligned_cols=71  Identities=35%  Similarity=0.552  Sum_probs=67.5

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      ++++++++.+++++++++++++|..++|+||+++++++..+|++||+++|..++.++.|++++++|+.+++
T Consensus        11 ~l~~ii~~~l~~~~~~i~~d~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~   81 (82)
T 2qnw_A           11 RVKDVVADQLGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKIATVQDALSYIEKAK   81 (82)
T ss_dssp             HHHHHHHHHHCCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHhhCCCccchhhccCCcHHHHHHHHHHHHHHHCCcCCHHHHHHcCCHHHHHHHHHHhc
Confidence            68899999999999999999999669999999999999999999999999999999999999999998875

>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A

Probab=99.84  E-value=5.8e-21  Score=100.79  Aligned_cols=71  Identities=42%  Similarity=0.624  Sum_probs=67.3

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      ++++++++.+++++++++++++|.+++|+||+++++++..+|++||+++|..++.++.|++++++++.++.
T Consensus         7 ~l~~~~~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~   77 (78)
T 1l0i_A            7 RVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTTVQAAIDYINGHQ   77 (78)
T ss_dssp             HHHHHHHHHHTCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHHHHHHhc
Confidence            67899999999999999999999669999999999999999999999999999999999999999998765

>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}

Probab=99.84  E-value=1.4e-21  Score=105.48  Aligned_cols=73  Identities=25%  Similarity=0.485  Sum_probs=68.5

Q ss_pred             hHHHHHHhhh---CCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770            2 PIISVIKNFQ---NVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG   74 (75)
Q Consensus         2 ~v~~ii~~~~---~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~   74 (75)
                      ++++++++.+   ++++++++++++|..++|+||+++++++..+|++||+++|..++.++.|++++++||.+++++
T Consensus        12 ~v~~~i~~~l~~~~~~~~~i~~d~~l~~dlglDSl~~vel~~~lE~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~~~   87 (88)
T 2l4b_A           12 QVMESVIGCLKLNDEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISDEDAQKLETVDDICRYIASKSSD   87 (88)
T ss_dssp             HHHHHHHHHHTCCHHHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTCCCCHHHHHTCCSHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHhhCCCCHhhCCCCCchhhccCCcHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHhhcc
Confidence            6788999999   888889999999966999999999999999999999999999999999999999999998765

>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}

Probab=99.84  E-value=5.1e-21  Score=102.37  Aligned_cols=71  Identities=32%  Similarity=0.464  Sum_probs=67.4

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      ++++++++.+++++++++++++|..++|+||+++++++..+|++||+++|..++.++.|++++++|+.+++
T Consensus        13 ~l~~~i~~~l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~   83 (84)
T 2kwl_A           13 KVRSIISEQLDKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENEANEFETVGDVVNFIKKRK   83 (84)
T ss_dssp             HHHHHHHHHHCCCGGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCCTTTTGGGGCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHHc
Confidence            57899999999999999999999669999999999999999999999999999999999999999999875

>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}

Probab=99.83  E-value=1e-20  Score=105.92  Aligned_cols=72  Identities=29%  Similarity=0.391  Sum_probs=67.4

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcc-----cccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQ-----IDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG   74 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~-----~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~   74 (75)
                      +|++++++.++ ++.+++++++|.     ++||||||++++|+..||++||++||++++.++.|++++++||.++.++
T Consensus        23 ~i~~il~e~l~-~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~~~   99 (107)
T 3ce7_A           23 YIVGMCQKFLQ-KGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDEVADNFQTLQEIADFVVSERAK   99 (107)
T ss_dssp             HHHHHHHTTBC-TTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhC-CccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHhcCCHHHHHHHHHHHHHH
Confidence            57889999999 889999999996     7999999999999999999999999999999999999999999988753

>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*

Probab=99.83  E-value=1.7e-20  Score=99.60  Aligned_cols=71  Identities=25%  Similarity=0.478  Sum_probs=67.3

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      ++++++++.+++++++++++++|..++|+||+.+++++..+|++||+++|..++.++.|++++++++.+++
T Consensus        11 ~l~~~i~~~l~~~~~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~   81 (82)
T 2cnr_A           11 GLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVGDATKYILDHQ   81 (82)
T ss_dssp             HHHHHHHHHSCCCTTTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCCCGGGGGTCSBHHHHHHHHHHSB
T ss_pred             HHHHHHHHHhCCCHHHCCCCcchhhccCCChHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHHHHHHHc
Confidence            57899999999999999999999669999999999999999999999999999999999999999998875

>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*

Probab=99.83  E-value=8.3e-21  Score=101.07  Aligned_cols=72  Identities=33%  Similarity=0.502  Sum_probs=67.7

Q ss_pred             hHHHHHHhhhCCCCC-CCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770            2 PIISVIKNFQNVDPF-KVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG   74 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~-~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~   74 (75)
                      ++++++++.++++++ +++++++|. ++|+|||++++++..+|++||+++|..++.++.|++++++|+.+++++
T Consensus         8 ~l~~i~~~~l~~~~~~~i~~~~~l~-dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~~~   80 (82)
T 2ava_A            8 KVSDIVKEKLALGADVVVTADSEFS-KLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIEGLLEK   80 (82)
T ss_dssp             HHHHHHHHHTTCSSSSCCCSSCCSC-CCTTCCSCHHHHHHHHHHHTTCCCCGGGSSSCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccccCCCCchh-hcCCCHHHHHHHHHHHHHHHCCccCHHHHHhCCCHHHHHHHHHHHHhc
Confidence            678999999999987 899999997 999999999999999999999999999999999999999999987653

>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}

Probab=99.83  E-value=2.6e-20  Score=104.00  Aligned_cols=72  Identities=19%  Similarity=0.362  Sum_probs=67.1

Q ss_pred             hHHHHHHhhhCCC--CCCCCCCCCcccccCc-chhHHHHHHHHHHHHhCCcCCcch--hhhhccHHHHHHHHHhhhc
Q 042770            2 PIISVIKNFQNVD--PFKVTTNGHFQIDLGL-DNLDFVEIVMALKEEFGFEIPDNE--ADIINTINMAVNFTASHCQ   73 (75)
Q Consensus         2 ~v~~ii~~~~~~~--~~~i~~~~~l~~dlgl-DSl~~v~l~~~le~~f~i~i~~~~--~~~~~tv~~l~~~i~~~~~   73 (75)
                      +|++++++.++++  +.+++++++|.+++|+ ||+++++|++.||++||++||+++  ..++.|++++++||.++++
T Consensus        28 ~i~~il~e~l~~~~~~~~i~~d~~L~~dLGl~DSL~~veLi~~lE~~FgI~I~~eel~~~~~~Tv~~l~~~I~~~~~  104 (105)
T 2lki_A           28 AVRNILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQTFETLGSLALFVEHKLS  104 (105)
T ss_dssp             HHHHHHHHHTTCTTGGGTCCTTSBCBTTBTTCCHHHHHHHHHHHHHHHTSCCCGGGCCGGGGSBHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCcccccCCCCCchhhhcCcccHHHHHHHHHHHHHHhCCCcCHHHhhHHhcCCHHHHHHHHHHHhc
Confidence            6889999999998  7899999999878999 999999999999999999999999  5689999999999998764

>2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A

Probab=99.83  E-value=7.6e-21  Score=105.32  Aligned_cols=72  Identities=22%  Similarity=0.397  Sum_probs=66.1

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcch------hhhhcc-----HHHHHHHHHh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNE------ADIINT-----INMAVNFTAS   70 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~------~~~~~t-----v~~l~~~i~~   70 (75)
                      +|++++++.+++++++++++++|.+++||||+++++|+..||++||++||+++      +.++.|     ++++++||.+
T Consensus         7 ~v~~ii~~~l~~~~~~i~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~~~~~~~T~~~~Tv~~l~~~i~~   86 (101)
T 2kw2_A            7 RVATIIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWTQEVNDGKATTEQYFVLKNLAARIDE   86 (101)
T ss_dssp             HHHHHHHHHHCCCGGGCCTTCBCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSSCHHHHHBHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHhhCCCCcchHHhcCCCHHHHHHHHHHHHHHHCCccCHHHhcchhhhhhccCCCcCcHHHHHHHHHH
Confidence            68899999999999999999999779999999999999999999999999987      556777     9999999998


Q ss_pred             hhc
Q 042770           71 HCQ   73 (75)
Q Consensus        71 ~~~   73 (75)
                      +++
T Consensus        87 ~~~   89 (101)
T 2kw2_A           87 LVA   89 (101)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            764

>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A

Probab=99.83  E-value=6.3e-21  Score=101.26  Aligned_cols=70  Identities=39%  Similarity=0.605  Sum_probs=65.0

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH   71 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~   71 (75)
                      ++++++++.+++++++++++++|..++|+||+++++++..+|++||+++|..++.++.|++++++++.++
T Consensus        11 ~l~~~l~~~l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~   80 (81)
T 1f80_D           11 RVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYIQNQ   80 (81)
T ss_dssp             HHHHHHHHHSSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHCC--
T ss_pred             HHHHHHHHHHCCCHHhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCccCHHHHHHCCCHHHHHHHHHhh
Confidence            5788999999999999999999955999999999999999999999999999999999999999998765

>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=2.5e-20  Score=102.73  Aligned_cols=73  Identities=42%  Similarity=0.720  Sum_probs=68.3

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG   74 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~   74 (75)
                      +|++++++.+++++++++++++|..++|+|||++++++..||++||++||..++.++.|++++++||.+++++
T Consensus        19 ~l~~~l~~~l~~~~~~i~~d~~l~~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~~~   91 (99)
T 2dnw_A           19 RVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDV   91 (99)
T ss_dssp             HHHHHHHHCTTSCTTTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCSHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHhCCCHhhCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHHHhcc
Confidence            5788999999999999999999966999999999999999999999999999999999999999999988653

>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A

Probab=99.82  E-value=1.2e-20  Score=100.52  Aligned_cols=70  Identities=20%  Similarity=0.374  Sum_probs=64.7

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccC-cchhHHHHHHHHHHHHhCCcCCcchhh--hhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLG-LDNLDFVEIVMALKEEFGFEIPDNEAD--IINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlg-lDSl~~v~l~~~le~~f~i~i~~~~~~--~~~tv~~l~~~i~~~~   72 (75)
                      ++++++++.++.++.+++++++|. ++| +||+++++|++.+|++||++||++++.  ++.|++++++||.+++
T Consensus         8 ~i~~il~~~~~~~~~~i~~d~~l~-~~g~lDSl~~velv~~lE~~fgi~i~~~~~~~~~~~Tv~~l~~~i~~~~   80 (80)
T 1dv5_A            8 GVLDILADLTGSDDVKKNLDLNLF-ETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQAQ   80 (80)
T ss_dssp             HHHHHHHHHHTSSSTTTCSSCCSS-TTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCCcccCCCCcchh-hccCcChHHHHHHHHHHHHHhCCcCCHHHcCHHhcCCHHHHHHHHHHcC
Confidence            688999999999888999999997 666 999999999999999999999999986  9999999999998763

>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*

Probab=99.82  E-value=8.6e-21  Score=101.88  Aligned_cols=72  Identities=18%  Similarity=0.262  Sum_probs=67.2

Q ss_pred             hHHHHHHhhhCCCCC----CCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770            2 PIISVIKNFQNVDPF----KVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG   74 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~----~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~   74 (75)
                      ++++++++.+++++.    +++++++| .++|+||+++++++..+|++||+++|..++.++.|++++++|+.+++++
T Consensus         9 ~l~~il~~~l~~~~~~~~~~i~~~~~l-~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~~~   84 (86)
T 1af8_A            9 DLRRALVECAGETDGTDLSGDFLDLRF-EDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGALAE   84 (86)
T ss_dssp             HHHHHHHTTCCCCSCCCTTTCSSTTST-TTTTCCTTTHHHHHHHHTTTTCSCCCTTTTTTCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccccccCCCCCCh-hhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHHHHHHHHhhc
Confidence            688999999999877    78999999 5999999999999999999999999999999999999999999988653

>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1

Probab=99.82  E-value=3.7e-20  Score=104.49  Aligned_cols=73  Identities=25%  Similarity=0.487  Sum_probs=68.5

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG   74 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~   74 (75)
                      ++++++++.+++++.+++++++|..++|+|||++++++..+|++||++||..++.++.|++++++||.++.++
T Consensus        11 ~l~~il~~~l~~~~~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~~~   83 (115)
T 1klp_A           11 GIAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYIQKLEEE   83 (115)
T ss_dssp             HHHHHHHHHTCCCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCCCHHHHTTCCSHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHhCcCHHhCCCCCchhhccCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHHHcc
Confidence            5788999999999999999999966999999999999999999999999999999999999999999987653

>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}

Probab=99.82  E-value=3.3e-20  Score=98.00  Aligned_cols=71  Identities=42%  Similarity=0.650  Sum_probs=67.1

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      ++++++++.+++++++++++++|..++|+||+.+++++..+|++||+++|..++.++.|++++++++.+++
T Consensus         9 ~l~~~i~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~   79 (80)
T 1x3o_A            9 KVKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEKIRTVKDAVEYIKAKL   79 (80)
T ss_dssp             HHHHHHHHHHTCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHCCCcCcHHhhcCccHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHHc
Confidence            57889999999999999999999559999999999999999999999999999999999999999998875

>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}

Probab=99.69  E-value=1.6e-21  Score=108.56  Aligned_cols=73  Identities=23%  Similarity=0.434  Sum_probs=69.0

Q ss_pred             ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770            1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG   74 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~   74 (75)
                      ++|++++++.+++++++++++++| .++|+|||++++|+..||++||++||..++.++.|++++++||.+++++
T Consensus        29 ~~l~~ila~~l~i~~~~I~~d~~l-~dLGlDSL~~veL~~~lE~~fgi~i~~~~l~~~~TV~~l~~~I~~~~~~  101 (103)
T 2lte_A           29 DHLLTVLSVASGVPKEEISRDSRM-EDLAFDSLVVSELSLKLRKEFGVTGVDDELDLLETVDELFQLVEKHRAA  101 (103)
Confidence            368889999999999999999999 6999999999999999999999999999999999999999999998765

>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1

Probab=99.81  E-value=1.8e-20  Score=100.01  Aligned_cols=72  Identities=17%  Similarity=0.318  Sum_probs=67.3

Q ss_pred             hHHHHHHhhhCCCCC-CCC--CCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770            2 PIISVIKNFQNVDPF-KVT--TNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG   74 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~-~i~--~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~   74 (75)
                      ++++++++.+++++. +++  ++++| .++|+||+++++++..+|++||+++|..++.++.|++++++|+.+++++
T Consensus         8 ~l~~~l~~~l~~~~~~~i~~~~~~~~-~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~~~   82 (83)
T 1or5_A            8 DLKKLLAETAGEDDSVDLAGELDTPF-VDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTTPAT   82 (83)
T ss_dssp             HHHHHHHHHSCCCSSCCGGGCSSSCH-HHHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHHHTTCCSC
T ss_pred             HHHHHHHHHhCCCcccccCCCCCCcH-HHhCCCHHHHHHHHHHHHHHHCCccCHHHHhccCCHHHHHHHHHHHhcC
Confidence            688999999999987 899  99998 5999999999999999999999999999999999999999999987754

>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A

Probab=99.80  E-value=1e-19  Score=95.35  Aligned_cols=72  Identities=38%  Similarity=0.634  Sum_probs=67.2

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ   73 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~   73 (75)
                      ++++++++.+++++++++++++|..++|+||+.+++++..+|++||+++|..++.++.|++++++++.++.+
T Consensus         5 ~l~~~~~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~~gi~i~~~~~~~~~tv~~l~~~i~~~~~   76 (77)
T 2ehs_A            5 RVKEIIAEQLGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQTVGDVINYLKEKVG   76 (77)
T ss_dssp             HHHHHHHHHHCCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhCCChhhCCCccchhhccCCCHHHHHHHHHHHHHHhCCccCHHHHHHcCCHHHHHHHHHHHhc
Confidence            678999999999999999999994499999999999999999999999999999999999999999998764

>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}

Probab=99.80  E-value=8.7e-20  Score=103.09  Aligned_cols=68  Identities=24%  Similarity=0.369  Sum_probs=60.9

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG   74 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~   74 (75)
                      +|++++++.++     |+++++|.+++|||||++++|+..||++||++||++++.++.|+++++++|.+++++
T Consensus        34 ~v~~il~e~l~-----I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~I~~e~l~~~~TV~dlv~~I~~~l~~  101 (113)
T 2cgq_A           34 TIQRILRTDRG-----ITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNIKTVGDVYTSVAVWFPE  101 (113)
T ss_dssp             HHHHHHTCCSC-----CCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCBHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHhC-----CCCCCchhhhcCCCHHHHHHHHHHHHHHhCCCcCHHHHHhCCCHHHHHHHHHHHHhc
Confidence            56677777776     999999977999999999999999999999999999999999999999999987653

>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1

Probab=99.80  E-value=1.1e-19  Score=99.63  Aligned_cols=71  Identities=14%  Similarity=0.313  Sum_probs=65.4

Q ss_pred             hHHHHHHhhhCCCCC----CCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770            2 PIISVIKNFQNVDPF----KVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ   73 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~----~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~   73 (75)
                      ++++++++.++.+..    +++++++| .++|+|||++++++..||++||++||..++.++.|++++++||.++.+
T Consensus         8 ~l~~ii~~~l~~~~~~~~~~i~~d~~~-~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~~   82 (95)
T 1nq4_A            8 DLLTLLRECAGEEESIDLGGDVEDVAF-DALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNASLT   82 (95)
T ss_dssp             HHHHHHHHHHTCSSTTCSCSCCSSSCH-HHHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccccccccccCCCCCCh-hhhCCCHHHHHHHHHHHHHHHCCccCHHHHHcCCCHHHHHHHHHHHHh
Confidence            688999999987644    79999999 599999999999999999999999999999999999999999988753

>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1

Probab=99.77  E-value=1.2e-18  Score=97.22  Aligned_cols=71  Identities=17%  Similarity=0.316  Sum_probs=63.7

Q ss_pred             hHHHHHHhhhC--CCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhh--hhccHHHHHHHHHhhhc
Q 042770            2 PIISVIKNFQN--VDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEAD--IINTINMAVNFTASHCQ   73 (75)
Q Consensus         2 ~v~~ii~~~~~--~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~--~~~tv~~l~~~i~~~~~   73 (75)
                      +|++++++.++  +++.+++++++|. ++|+|||++++|+..||++||++||++++.  ++.|++.++++|....+
T Consensus        26 ~i~~il~~~l~~~v~~~~i~~d~~l~-dlGlDSL~~veLv~~lE~~fgI~i~~~~l~~~~~~tv~~l~~~v~~~~~  100 (105)
T 2jq4_A           26 TIREILAKFGQLPTPVDTIADEADLY-AAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVKLILD  100 (105)
T ss_dssp             HHHHHHHHTSCCSSCGGGCCTTSCGG-GGTCCHHHHHHHHHHHHHHHSCCCCHHHHSSGGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCcccCCCCCCHh-hcCCCHHHHHHHHHHHHHHHCCCcCHHHhhhhhcCCHHHHHHHHHHHhc
Confidence            68899999875  4578999999997 999999999999999999999999999985  88999999999887654

>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}

Probab=99.76  E-value=2.1e-20  Score=98.73  Aligned_cols=71  Identities=44%  Similarity=0.621  Sum_probs=67.1

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      ++++++++.+++++++++++++|..++|+||+++++++..+|++||+++|..++.++.|++++++++.+++
T Consensus         8 ~l~~~~~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~   78 (79)
T 2l3v_A            8 RVKKIVVEHLGVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILTVGDAVKFIDKAS   78 (79)
T ss_dssp             HHHHHHHHHTCCCSTTCCTTCCHHHHTCCCSSSSSSTTTTHHHHTTCCCCHHHHTTCSSSSTTHHHHHHTC
T ss_pred             HHHHHHHHHhCCCHhhCCCCCccccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHHHHHHhc
Confidence            68899999999999999999999559999999999999999999999999999999999999999998875

>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1

Probab=99.74  E-value=5.3e-20  Score=100.30  Aligned_cols=72  Identities=22%  Similarity=0.356  Sum_probs=32.4

Q ss_pred             hHHHHHHhhhCC--------CCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCC---cchhhhhccHHHHHHHHHh
Q 042770            2 PIISVIKNFQNV--------DPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIP---DNEADIINTINMAVNFTAS   70 (75)
Q Consensus         2 ~v~~ii~~~~~~--------~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~---~~~~~~~~tv~~l~~~i~~   70 (75)
                      +++++|++.++.        ++++++++++| .++|+||+++++++..+|++||++||   ..++.++.|++++++||.+
T Consensus         8 ~i~~ii~~~~~~~~~~~~~~~~~~i~~d~~l-~dlg~DSl~~vel~~~lE~~fgi~i~~~~~~~~~~~~Tv~~l~~~i~~   86 (92)
T 1fh1_A            8 EIISAINKLVKAENGERTSVALGEITTDTEL-TSLGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLNNIGDVVEAVRG   86 (92)
T ss_dssp             HHHHHHHHHC-----------------------------CTTTTHHHHHHHC-----------------CTTTSTHHHHC
T ss_pred             HHHHHHHHHHHhccccccCCCHhhCCCCCCH-hhcCCChHHHHHHHHHHHHHhCCccCCccHhHHhhcCCHHHHHHHHHH
Confidence            688899999874        44589999999 69999999999999999999999999   7788999999999999998


Q ss_pred             hhcC
Q 042770           71 HCQG   74 (75)
Q Consensus        71 ~~~~   74 (75)
                      ++++
T Consensus        87 ~~~~   90 (92)
T 1fh1_A           87 LLTK   90 (92)
T ss_dssp             ----
T ss_pred             Hhhc
Confidence            8764

>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A

Probab=99.72  E-value=3.2e-17  Score=89.45  Aligned_cols=70  Identities=19%  Similarity=0.301  Sum_probs=63.5

Q ss_pred             ChHHHHHHhhhCCC-CCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            1 DPIISVIKNFQNVD-PFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         1 ~~v~~ii~~~~~~~-~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      +.+++.+++++|++ +++|+++.+|. ++|+|||+.++|...||+.||+.+|..++... |++++++++....
T Consensus         9 ~~v~~~va~iLg~~~~~~I~~~~~l~-dLG~DSL~aVELr~~Le~~fgi~lp~~~l~~~-Ti~~La~~v~~~~   79 (91)
T 2cg5_B            9 RDLVEAVAHILGIRDLAAVNLDSSLA-DLGLDALMSVEVRQTLERELNLVLSVREVRQL-TLRKLQELSSKAD   79 (91)
T ss_dssp             TTHHHHHHHHTTCCSCTTSCTTSBTT-TTTCCHHHHHHHHHHHHHHHCCCCCHHHHHTC-BHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHCCCchhhCCCCCCHH-HhCCcchHHHHHHHHHHHHHCCCCCHHHHHhC-CHHHHHHHHhccc
Confidence            36899999999996 59999999995 99999999999999999999999999999775 9999999987654

>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus}

Probab=99.71  E-value=2.1e-17  Score=88.82  Aligned_cols=72  Identities=17%  Similarity=0.311  Sum_probs=67.0

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCc--chhhhhccHHHHHHHHHhhhcC
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPD--NEADIINTINMAVNFTASHCQG   74 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~--~~~~~~~tv~~l~~~i~~~~~~   74 (75)
                      .+++++++.+++++++++++++|. ++|+|||.+++++..++++||+++|.  ..+..+.|++++++++.+...+
T Consensus        15 ~l~~~~~~~l~~~~~~i~~~~~~~-~lG~DSL~~~~l~~~l~~~~g~~l~~~~~~l~~~~Tv~~la~~l~~~~~~   88 (89)
T 2kr5_A           15 AVMRVVSEESGIALEELTDDSNFA-DMGIDSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTVRALKDFMLGSGDA   88 (89)
T ss_dssp             HHHHHHHHHHCCCGGGCCTTCBHH-HHTCCHHHHHHHHHHHHHTTCCCCCSSCCTTTSCCBHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHCcCHHHCCCCCCHH-HcCccHHHHHHHHHHHHHHHCCCCCchHHHHHcCCCHHHHHHHHHHhCcC
Confidence            578899999999999999999995 99999999999999999999999999  9999999999999999886544

>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A

Probab=99.70  E-value=5.9e-17  Score=86.53  Aligned_cols=70  Identities=16%  Similarity=0.114  Sum_probs=66.1

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      .+++++++.+++++..++++.+|. ++|+||+.++++...+++.||+++|...+.++.|++++++++.++.
T Consensus        18 ~l~~~~~~~l~~~~~~i~~~~~~~-~lG~DSl~~~~l~~~l~~~~~~~i~~~~~~~~~ti~~la~~l~~~~   87 (88)
T 2afd_A           18 WLIDQFAQQLDVDPDDIDMEESFD-NYDLNSSKALILLGRLEKWLGKELNPVLIFNYPTIAQLAKRLGELY   87 (88)
T ss_dssp             HHHHHHHHHHTSCGGGCCTTSCGG-GTTCCSTHHHHHHHHHHHHTTSCCCGGGTTTCCSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCcCHHHcCCCCCHH-HcCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHh
Confidence            477889999999989999999996 9999999999999999999999999999999999999999998765

>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*

Probab=99.66  E-value=1.7e-16  Score=86.42  Aligned_cols=71  Identities=14%  Similarity=0.198  Sum_probs=66.6

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ   73 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~   73 (75)
                      .+++++++.+++++++++++++|. ++|+||+.++++...+++.||+++|..++..+.|++++++++.++..
T Consensus        25 ~l~~~~~~~l~~~~~~i~~~~~~~-~lG~DSl~~~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~~l~~~~~   95 (99)
T 2liu_A           25 VLKQQLAEALYTEESEIAEDQKFV-DLGLDSIVGVEWTTTINQTYNLNLKATKLYDYPTLLELSGYIAQILS   95 (99)
T ss_dssp             HHHHHHHHHTTSCGGGCCSSSCHH-HHTCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHcCCCCCHH-HhCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHhh
Confidence            477889999999999999999996 99999999999999999999999999999999999999999988753

>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A

Probab=99.65  E-value=1.5e-16  Score=86.27  Aligned_cols=70  Identities=19%  Similarity=0.249  Sum_probs=65.3

Q ss_pred             hHHHHHHhhhC-CCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQN-VDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~-~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      .+++++++.++ .+++.++++.+|. ++|+|||..+++...+++.||+++|...+.+..|++++++++.++.
T Consensus        24 ~l~~~~~~~l~~~~~~~i~~~~~f~-~lG~DSL~a~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~~l~~~l   94 (95)
T 2ju1_A           24 LVRTSTATVLGHDDPKAVRATTPFK-ELGFDSLAAVRLRNLLNAATGLRLPSTLVFDHPNASAVAGFLDAEL   94 (95)
T ss_dssp             HHHHHHHHHTTCCCGGGCCSSSCHH-HHTCSSHHHHHHHHHHGGGTSSCCCTTHHHHCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCChhhCCCCCCHH-HcCCcHHHHHHHHHHHHHHHCCCCChhHHhcCCCHHHHHHHHHHHc
Confidence            47788999999 7788999999996 9999999999999999999999999999999999999999998764

>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}

Probab=99.62  E-value=8.9e-16  Score=93.71  Aligned_cols=71  Identities=13%  Similarity=0.282  Sum_probs=67.1

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ   73 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~   73 (75)
                      .|++++++.+++++++++++.+|. ++|+|||++++++..+++.||+++|...+..+.|++++++|+.++..
T Consensus        30 ~l~~~~a~~l~~~~~~i~~~~~f~-~lG~DSl~~~el~~~l~~~~g~~l~~~~~~~~~Ti~~la~~l~~~~~  100 (212)
T 2l22_A           30 FLRQSLAAMLYCEPGQIRDGSRFL-ELGLDSVIAAQWIREINKHYQLKIPADGIYTYPVFKAFTQWVGTQLQ  100 (212)
T ss_dssp             HHHHHHHHHTTCCTTSCCTTCBHH-HHTCCHHHHHHHHHHHHHHTTCCCCTTHHHHCCBHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHCcCHHHcCCCCCHH-HhCCcHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHhcc
Confidence            578899999999999999999996 99999999999999999999999999999999999999999987653

>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}

Probab=99.62  E-value=1.9e-15  Score=82.17  Aligned_cols=70  Identities=14%  Similarity=0.114  Sum_probs=64.4

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG   74 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~   74 (75)
                      +|.+++++.+|+  ..+.++.+|+ ++|.|||.+++++..++++||+.+|..++....|++++++++.+...+
T Consensus        20 ~l~~i~~~vL~~--~~i~~~~~Ff-~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~pTi~~la~~l~~~~~~   89 (93)
T 4i4d_A           20 DIAAIWAETLGR--DSVGPHEDFA-ALGGNSIHAIXITNRVEELVDAELSIRVLLETRTVAGMTDHVHATLTG   89 (93)
T ss_dssp             HHHHHHHHHHTC--SCCCTTCCTT-TTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHCSHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHhCC--CCCCCCCCHH-HcCCcHHHHHHHHHHHHHHhCCCCCHHHHHcCCCHHHHHHHHHHHccc
Confidence            578899999998  4699999998 999999999999999999999999999999999999999999987643

>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A

Probab=99.58  E-value=7.3e-15  Score=79.67  Aligned_cols=67  Identities=15%  Similarity=0.248  Sum_probs=62.2

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH   71 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~   71 (75)
                      ++.+++++.++++  .++++++|+ ++|.|||.+++++..++++||+++|..++....|++++++++.+.
T Consensus        18 ~l~~i~~~vL~~~--~i~~~~~Ff-~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~~Ti~~la~~i~~~   84 (91)
T 1dny_A           18 KLAEIWERVLGVS--GIGILDNFF-QIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVATR   84 (91)
T ss_dssp             HHHHHHHHHHTCS--SCCSSCCTT-SSCCSSHHHHHHHHHHHHHCCCCCCHHHHHHSCSHHHHHHHHHC-
T ss_pred             HHHHHHHHHhCCC--CCCCCCCHH-HcCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHh
Confidence            5788999999985  799999997 999999999999999999999999999999999999999999765

>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}

Probab=99.57  E-value=1.1e-14  Score=88.90  Aligned_cols=71  Identities=14%  Similarity=0.255  Sum_probs=66.9

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ   73 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~   73 (75)
                      .+++++++.+++++++++++.+|. ++|+||+..++++..|+++||+++|...+.++.|++++++|+.++.+
T Consensus       134 ~l~~~~~~~l~~~~~~i~~~~~f~-~lG~DSl~a~el~~~l~~~~g~~l~~~~l~~~~Ti~~La~~l~~~~~  204 (212)
T 2l22_A          134 YLKQSLGELLFLDPGQLRSGAQFL-DLGMDSVTGTQWMRGVSRHFSIQLAADAIYTWPTLKSLADEVDRRVQ  204 (212)
T ss_dssp             HHHHHHHHHHSSCSSSCCSSCCGG-GGCSSSHHHHHHHHHHHHHTTCCCCGGGGGGCCSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCChhhCCCCCCHH-HhCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHHHHHHHHhc
Confidence            478899999999999999999996 99999999999999999999999999999999999999999988764

>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=3.7e-12  Score=71.43  Aligned_cols=69  Identities=17%  Similarity=0.266  Sum_probs=62.3

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhC-CcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFG-FEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~-i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      +|.++++++++ ....+.++++|+ ++|-+||.++.|+..|+++|| +++|..++....|+++++++|.++.
T Consensus        29 ~La~iW~~vL~-~~~~i~~~ddFF-~lGG~SLla~rLv~~ir~~~g~v~l~l~~Lf~~pTl~~lA~~l~~~~   98 (110)
T 2cq8_A           29 AVRSVWQRILP-KVLEVEDSTDFF-KSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRKL   98 (110)
T ss_dssp             HHHHHHHHHCS-SCSCCCTTCBHH-HHHCCTTHHHHHHHHHHHHHTSCCCCHHHHHHCCBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCCCCCCCHH-hcCChHHHHHHHHHHHHHHcCCCCcCHHHHHhCCCHHHHHHHHHHHh
Confidence            47788889998 135699999998 999999999999999999999 9999999999999999999998765

>3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A

Probab=99.26  E-value=2.1e-11  Score=77.75  Aligned_cols=68  Identities=12%  Similarity=0.172  Sum_probs=62.3

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      ++.+++++.+|++.  +.++.+|. ++|.|||.+++++..++++||++++..++....|++++++++.+..
T Consensus        15 ~l~~~~~~~l~~~~--i~~~~~ff-~lGgdSl~a~~l~~~l~~~~~~~~~~~~~~~~~t~~~la~~~~~~~   82 (329)
T 3tej_A           15 IIAAAFSSLLGCDV--QDADADFF-ALGGHXLLAMKLAAQLSRQVARQVTPGQVMVASTVAKLATIIDAEE   82 (329)
T ss_dssp             HHHHHHHHHHTC-C--CSTTCBTT-TTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHCCBHHHHHHHHHSCT
T ss_pred             HHHHHHHHHhCCCC--CCCCCCHH-HcCCcHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHhhc
Confidence            57889999999864  89999997 9999999999999999999999999999999999999999998653

>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}

Probab=99.07  E-value=1.8e-10  Score=73.06  Aligned_cols=67  Identities=13%  Similarity=0.095  Sum_probs=62.0

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH   71 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~   71 (75)
                      .+++.+++.+ ++++++.++.+|. ++|+||+.++.|+..+++. |++++..++....|++++++++.++
T Consensus       219 wlr~~va~~L-~~~~~i~~~~nL~-~lGlDSi~~m~l~~~~~~~-g~~~~~~~l~~~ptl~~~~~~l~~~  285 (287)
T 2fq1_A          219 ALREVILPLL-DESDEPFDDDNLI-DYGLDSVRMMALAARWRKV-HGDIDFVMLAKNPTIDAWWKLLSRE  285 (287)
T ss_dssp             HHHHHHGGGC-CCSSCCCTTSCSG-GGTCCTTHHHHHHHHHTTT-CTTCCHHHHHTSCSHHHHHHHHHCC
T ss_pred             HHHHHHHHHh-CCHhhcCCCCCHH-HhCccHHHHHHHHHHHHHc-CCCCCHHHHHhCccHHHHHHHHHhh
Confidence            3677889999 8889999999997 9999999999999999998 9999999999999999999999843

>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}

Probab=99.03  E-value=7.8e-10  Score=73.72  Aligned_cols=67  Identities=21%  Similarity=0.250  Sum_probs=62.2

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH   71 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~   71 (75)
                      ++.+++++++|++  .+..+.+|. ++|.|||.++.++..+++.||+.++..++....|++++++++...
T Consensus        14 ~l~~iw~~vL~~~--~i~~~d~ff-~lGgdSl~a~~l~~~~~~~~g~~l~~~~i~~~~ti~~la~~~~~~   80 (520)
T 2jgp_A           14 RLAQVWEQVLNVP--QVGALDDFF-ALGGHSLRAMRVLSSMHNEYQVDIPLRILFEKPTIQELAAFIEET   80 (520)
T ss_dssp             HHHHHHHHHHTCS--CCCTTCBTT-TTTCCHHHHHHHHHHHHHHHCBCCCHHHHHHSCBHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCC--CCCCCccHH-HhcccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhh
Confidence            5788999999985  699999998 999999999999999999999999999999999999999999754

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=98.77  E-value=1e-08  Score=75.03  Aligned_cols=68  Identities=16%  Similarity=0.194  Sum_probs=62.4

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      ++.+++++.+|++  .+..+.+|+ ++|.|||.+++++..+++.||+++|..++....|++++++++....
T Consensus       976 ~l~~~~~~vL~~~--~i~~~~~ff-~lGg~Sl~a~~l~~~l~~~~g~~l~~~~~~~~~ti~~la~~~~~~~ 1043 (1304)
T 2vsq_A          976 TIAQIWSEVLGRK--QIGIHDDFF-ALGGHALKAMTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNGG 1043 (1304)
T ss_dssp             HHHHHHHHHHTCS--CCCTTCCTT-TTTCCHHHHHHHHHHSSSTTSCCCCSSCTTTCCSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCC--ccCCCCCHH-HhCCChHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHhcC
Confidence            4788999999974  689999998 9999999999999999999999999999999999999999997643

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=98.75  E-value=9e-10  Score=73.77  Aligned_cols=67  Identities=22%  Similarity=0.343  Sum_probs=0.0

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      .|.+++++.++++  .+..+.+|+ ++|.|||.++.++..+++ ||+.+|..++....|++++++++.+..
T Consensus        49 ~l~~~w~~~l~~~--~i~~~~~ff-~lGg~Sl~a~~l~~~~~~-~~~~~~~~~~~~~~t~~~la~~~~~~~  115 (508)
T 4f6l_B           49 TFVDVFGEVLKQN--DVGVDDDFF-ELGGNSLEAMLVVSHLKR-FGHHISMQTLYQYKTVRQIVNYMYQNQ  115 (508)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCC--CCCCCCChH-HcCchHHHHHHHHHHHHH-cCCCccHHHHhcCCcHHHHHHHHHhhc
Confidence            5678889999886  689999998 999999999999999986 999999999999999999999997653

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=98.73  E-value=2.3e-08  Score=68.25  Aligned_cols=68  Identities=13%  Similarity=0.106  Sum_probs=58.2

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      .+.+++++.++. ...+..+++|+ ++|.|||.++.|+..+++ ++.+++..++....|++++++++.+..
T Consensus       549 ~l~~~~~~~l~~-~~~~~~~d~Ff-~lGgdSl~a~~l~~~l~~-~~~~~~~~~~~~~pti~~la~~l~~~~  616 (617)
T 3rg2_A          549 ALREVILPLLDE-SDEPFDDDNLI-DYGLDSVRMMALAARWRK-VHGDIDFVMLAKNPTIDAWWKLLSREV  616 (617)
T ss_dssp             HHHHHHGGGSCT-TCCCCTTSCGG-GGTCCHHHHHHHHHHHHT-TSTTCCHHHHHHSCCHHHHHHHHCC--
T ss_pred             HHHHHHHHHhcc-CCCCCCCCChh-hcCccHHHHHHHHHHHHH-hcCCCCHHHHhcCCCHHHHHHHHHhhc
Confidence            466778888763 35688899998 999999999999999987 789999999999999999999998754

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=98.67  E-value=2.5e-09  Score=73.42  Aligned_cols=68  Identities=10%  Similarity=0.074  Sum_probs=0.0

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHH-HhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKE-EFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~-~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      .+.+++++.++++  .+..+.+|+ ++|.|||.++.|+..+++ .||+.++..++....|++++++++.+..
T Consensus       528 ~l~~iw~~vL~~~--~~~~~d~Ff-~lGGdSl~a~~l~~~l~~~~~~~~l~~~~~f~~pti~~la~~l~~~~  596 (620)
T 4dg8_A          528 GCAQLWSELLGCE--VGAADQDFF-LCGGNSLLALQLVALCQSAGAGANLGLADLQANSRLDQFSRLLRSHG  596 (620)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCC--CCCCCCChh-hccCcHHHHHHHHHHHHhhCCCCCcCHHHHhcCCCHHHHHHHHHhcC
Confidence            4677888899874  578889998 999999999999999998 8999999999999999999999998653

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=98.32  E-value=6.7e-08  Score=74.64  Aligned_cols=68  Identities=16%  Similarity=0.274  Sum_probs=0.0

Q ss_pred             hHHHHHHhhhCCC-CCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770            2 PIISVIKNFQNVD-PFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH   71 (75)
Q Consensus         2 ~v~~ii~~~~~~~-~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~   71 (75)
                      .+.+++++.++++ .++++++.+|. ++|+|||..++|...++++||+.+|..++.. .|+..+++++...
T Consensus      2127 ~l~~~~a~vL~~~~~~~i~~~~~~~-~lG~DSL~avelr~~i~~~~~~~l~~~~i~~-~t~~~la~~~~~~ 2195 (2512)
T 2vz8_A         2127 DLVKAVAHILGIRDVASINPDSTLV-DLGLDSLMGVEVRQILEREHDLVLSMREVRQ-LSLRKLQELSSKT 2195 (2512)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCCcccccCCCCchH-HhCcchHHHHHHHHHHHHHhCCcccHHHHHh-hhHHHHHHHHhhc
Confidence            4678889999987 57899999997 9999999999999999999999999999866 6888887776543

>2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens}

Probab=96.16  E-value=0.00062  Score=42.70  Aligned_cols=37  Identities=8%  Similarity=-0.167  Sum_probs=8.7

Q ss_pred             CcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHH
Q 042770           29 GLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAV   65 (75)
Q Consensus        29 glDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~   65 (75)
                      |.|||.+++++.+++++||+++|..++....|+..++
T Consensus         1 GGdSL~a~~l~~rl~~~~g~~l~~~~lf~~pt~~~l~   37 (316)
T 2px6_A            1 GSHNLACPTPKEDGLAQQQTQLNLRSLLVNPEGPTLM   37 (316)
T ss_dssp             -------------------------CCCCCTTSCSEE
T ss_pred             CCchHHHHHHHHHHHHHHhhccchhhhhcCCCcCeeE
Confidence            7899999999999999999999999998888876543

>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1

Probab=91.56  E-value=0.25  Score=22.47  Aligned_cols=21  Identities=29%  Similarity=0.542  Sum_probs=18.1

Q ss_pred             CcchhHHHHHHHHHHHHhCCc
Q 042770           29 GLDNLDFVEIVMALKEEFGFE   49 (75)
Q Consensus        29 glDSl~~v~l~~~le~~f~i~   49 (75)
                      ++.=+...+|+..+|++||++
T Consensus        12 ~lTvlE~~eLvk~leekfGVs   32 (40)
T 1dd4_C           12 KLTVSELAELVKKLEDKFGVT   32 (40)
T ss_dssp             TSCHHHHHHHHHHHHHHTCCC
T ss_pred             hCcHHHHHHHHHHHHHHHCCC
Confidence            555678899999999999996

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=90.38  E-value=0.051  Score=43.90  Aligned_cols=51  Identities=8%  Similarity=0.096  Sum_probs=0.0

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCccccc-CcchhHHHHHHHHHHHHhCCcCCcc
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDL-GLDNLDFVEIVMALKEEFGFEIPDN   53 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dl-glDSl~~v~l~~~le~~f~i~i~~~   53 (75)
                      .++.+++..++.++++|.++.++. +| |.+|...-+|+..|..+||...|+.
T Consensus      1798 ~~~~liA~~~k~~~~~i~~~~~i~-~L~gg~St~~nell~dl~~efg~~~p~~ 1849 (3089)
T 3zen_D         1798 ATVALIALSAKMRIDQIEALDSIE-SITDGASSRRNQLLVDLGSELNLGAIDG 1849 (3089)
T ss_dssp             -----------------------------------------------------
T ss_pred             HHHHHHHHHhCCChhHCCccccHH-HHhCCchHHHHHHHHHHHHHhCCCCCCc
Confidence            467788899999999999999996 66 9999999999999999999977654

>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C

Probab=88.21  E-value=0.49  Score=20.11  Aligned_cols=19  Identities=32%  Similarity=0.599  Sum_probs=15.6

Q ss_pred             CcchhHHHHHHHHHHHHhC
Q 042770           29 GLDNLDFVEIVMALKEEFG   47 (75)
Q Consensus        29 glDSl~~v~l~~~le~~f~   47 (75)
                      ++.=+.+.+|+..+|++||
T Consensus        12 ~lTvlEl~eLvk~lEe~fG   30 (30)
T 1zav_U           12 KLTVSELAELVKKLEDKFG   30 (30)
T ss_dssp             HSBHHHHHHHHHHHHHHTC
T ss_pred             hCcHHHHHHHHHHHHHHhC
Confidence            4555778899999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	75
d1t8ka_	77	a.28.1.1 (A:) Acyl carrier protein {Escherichia co	4e-14
d1f80d_	74	a.28.1.1 (D:) Acyl carrier protein {Bacillus subti	3e-13
d1dv5a_	80	a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactob	4e-10
d1klpa_	115	a.28.1.1 (A:) Acyl carrier protein {Mycobacterium	4e-09
d1or5a_	82	a.28.1.1 (A:) Frenolicin polyketide synthase acyl	4e-06
d1nq4a_	95	a.28.1.1 (A:) Oxytetracycline polyketide synthase	8e-06
d2jq4a1	83	a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Ag	0.001

>d1t8ka_ a.28.1.1 (A:) Acyl carrier protein {Escherichia coli [TaxId: 562]} Length = 77

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Acyl carrier protein
species: Escherichia coli [TaxId: 562]

 Score = 58.6 bits (142), Expect = 4e-14
 Identities = 31/69 (44%), Positives = 42/69 (60%)

Query: 3  IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
          +  +I     V   +VT N  F  DLG D+LD VE+VMAL+EEF  EIPD EA+ I T+ 
Sbjct: 7  VKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQ 66

Query: 63 MAVNFTASH 71
           A+++   H
Sbjct: 67 AAIDYINGH 75

>d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis [TaxId: 1423]} Length = 74

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Acyl carrier protein
species: Bacillus subtilis [TaxId: 1423]

 Score = 56.3 bits (136), Expect = 3e-13
 Identities = 27/65 (41%), Positives = 38/65 (58%)

Query: 3  IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
          +  +I +   VD   V     F+ DLG D LD VE+VM L++EF  EI D +A+ I T+ 
Sbjct: 8  VTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVG 67

Query: 63 MAVNF 67
           AVN+
Sbjct: 68 DAVNY 72

>d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]} Length = 80

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: apo-D-alanyl carrier protein
domain: apo-D-alanyl carrier protein
species: Lactobacillus casei [TaxId: 1582]

 Score = 48.3 bits (115), Expect = 4e-10
 Identities = 12/67 (17%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 3  IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNE--ADIINT 60
          ++ ++ +    D  K   + +      LD++  V++++ L+ +FG + P +E      +T
Sbjct: 9  VLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDT 68

Query: 61 INMAVNF 67
           N  +  
Sbjct: 69 PNKIIAK 75

>d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium tuberculosis [TaxId: 1773]} Length = 115

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Acyl carrier protein
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.1 bits (111), Expect = 4e-09
 Identities = 19/73 (26%), Positives = 38/73 (52%)

Query: 3  IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
          I  +I+    ++P ++T    F  DL +D+L  VEI +  ++++G +IPD +   + T+ 
Sbjct: 12 IAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVG 71

Query: 63 MAVNFTASHCQGN 75
            V +     + N
Sbjct: 72 DVVAYIQKLEEEN 84

>d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]} Length = 82

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Frenolicin polyketide synthase acyl carrier protein, Fren ACP
species: Streptomyces roseofulvus [TaxId: 33902]

 Score = 38.4 bits (89), Expect = 4e-06
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 27 DLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71
          DLG D+L  +E    L++ +G  + D     + T    ++   + 
Sbjct: 34 DLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTT 78

>d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]} Length = 95

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Oxytetracycline polyketide synthase acyl carrier
species: Streptomyces rimosus [TaxId: 1927]

 Score = 37.7 bits (87), Expect = 8e-06
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 13 VDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC 72
          +D      +  F   LG D+L  +  V  ++ ++G ++ D+  +   T    +  T +  
Sbjct: 23 IDLGGDVEDVAFD-ALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNASL 81

Query: 73 QG 74
           G
Sbjct: 82 TG 83

>d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]} Length = 83

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Hypothetical protein Atu2571
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 31.9 bits (72), Expect = 0.001
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 13 VDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMA 64
               +          GL +   V++++ ++E F  E PDN  +  +  ++ 
Sbjct: 17 TPVDTIADEADL-YAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIK 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	75
d1t8ka_	77	Acyl carrier protein {Escherichia coli [TaxId: 562	99.92
d1f80d_	74	Acyl carrier protein {Bacillus subtilis [TaxId: 14	99.89
d1vkua_	85	Acyl carrier protein {Thermotoga maritima [TaxId:	99.85
d1dv5a_	80	apo-D-alanyl carrier protein {Lactobacillus casei	99.83
d1klpa_	115	Acyl carrier protein {Mycobacterium tuberculosis [	99.83
d2jq4a1	83	Hypothetical protein Atu2571 {Agrobacterium tumefa	99.78
d2af8a_	86	Actinorhodin polyketide synthase acyl carrier prot	99.78
d1nq4a_	95	Oxytetracycline polyketide synthase acyl carrier {	99.77
d1or5a_	82	Frenolicin polyketide synthase acyl carrier protei	99.76
d2pnga1	76	Type I fatty acid synthase ACP domain {Rat (Rattus	99.64
d2gdwa1	76	Peptidyl carrier protein (PCP), thioester domain {	99.57
d2gyc31	47	Ribosomal protein L7/12, oligomerisation (N-termin	94.71
d1dd3a1	57	Ribosomal protein L7/12, oligomerisation (N-termin	89.19
d2oaia1	87	Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}	83.12
d1zavu1	30	Ribosomal protein L7/12, oligomerisation (N-termin	80.75

>d1t8ka_ a.28.1.1 (A:) Acyl carrier protein {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Acyl carrier protein
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.5e-25  Score=118.01  Aligned_cols=73  Identities=42%  Similarity=0.626  Sum_probs=69.8

Q ss_pred             ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770            1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ   73 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~   73 (75)
                      +++++++++.+|+++++++++++|.++||||||++++++..+|++||++||++++.++.|++++++||.++++
T Consensus         5 ~~v~~iia~~l~i~~~~i~~~~~l~~dLg~DSl~~~el~~~iE~~f~i~i~~~~~~~~~Tv~dlv~~i~~~~A   77 (77)
T d1t8ka_           5 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGHQA   77 (77)
T ss_dssp             HHHHHHHHHHHTCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHCCCHHHcCCCCcchhccccchhHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHccC
Confidence            4789999999999999999999998889999999999999999999999999999999999999999998864

>d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Acyl carrier protein
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=3.6e-24  Score=111.83  Aligned_cols=69  Identities=39%  Similarity=0.616  Sum_probs=66.1

Q ss_pred             ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHH
Q 042770            1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTA   69 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~   69 (75)
                      ++|++++++.+++++++++++++|.+|+|+||+++++++..+|++||+++|.+++.+++|++++++||+
T Consensus         6 ~~v~~iia~~l~~~~~~i~~~~~~~~DlG~DSl~~vel~~~le~~f~i~i~~~~~~~~~Tv~~l~~~ie   74 (74)
T d1f80d_           6 ERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYIQ   74 (74)
T ss_dssp             HHHHHHHHHHSSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHCC
T ss_pred             HHHHHHHHHHHCcCHHHcCCCccHHHhcCccHhHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHHC
Confidence            478999999999999999999999878999999999999999999999999999999999999999974

>d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Acyl carrier protein
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=1.2e-21  Score=104.19  Aligned_cols=71  Identities=21%  Similarity=0.449  Sum_probs=68.2

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ   73 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~   73 (75)
                      ++++++++.+|+++++++++++|. ++|+||+++++++..++++||+++|..++.+++|++++++||.++++
T Consensus        12 ~l~~iv~~~l~~~~~~i~~~~~~~-dlG~DSl~~v~l~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~i~~~~~   82 (85)
T d1vkua_          12 KFVEIASEKMGKDLETVDEENTFK-ELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLIDIVIKKLE   82 (85)
T ss_dssp             HHHHHHHHTTCCCCCSCCTTSBTT-TTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHCCCCCCHH-HhcCcchHHHHHHHHHHHHccCCCCHHHHHHcCCHHHHHHHHHHHHh
Confidence            688999999999999999999995 99999999999999999999999999999999999999999999875

>d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: apo-D-alanyl carrier protein
domain: apo-D-alanyl carrier protein
species: Lactobacillus casei [TaxId: 1582]

Probab=99.83  E-value=2.5e-21  Score=102.21  Aligned_cols=71  Identities=18%  Similarity=0.277  Sum_probs=65.8

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhh--hhccHHHHHHHHHhhh
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEAD--IINTINMAVNFTASHC   72 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~--~~~tv~~l~~~i~~~~   72 (75)
                      +|++++++.+|.++.+++++++|.+.+|+||+++++++..+|++||+++|+.++.  ++.||+++++||.+.+
T Consensus         8 ~v~~il~~~l~~~~~~i~~d~~l~e~gglDSl~~vel~~~ie~~fgi~i~~~~l~~~~~~Tv~~l~~~v~~lq   80 (80)
T d1dv5a_           8 GVLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQAQ   80 (80)
T ss_dssp             HHHHHHHHHHTSSSTTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhccchhhcCCCccccccCCCCHHHHHHHHHHHHHHHCCCCCHHHhhHHhCCCHHHHHHHHHHcC
Confidence            6889999999999999999999986678999999999999999999999999984  8999999999998753

>d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Acyl carrier protein
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=1.1e-20  Score=105.33  Aligned_cols=72  Identities=25%  Similarity=0.498  Sum_probs=68.5

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ   73 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~   73 (75)
                      +|++++++.+|+++++++++++|.+++||||++.++|+..++++||+.+|...+.++.|++++++||.+..+
T Consensus        11 ~l~~iv~~~l~~~~~~i~~~~~~~~dlG~DSl~~~~l~~~le~~f~i~i~~~~~~~~~Tv~~l~~~l~~~~~   82 (115)
T d1klpa_          11 GIAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYIQKLEE   82 (115)
T ss_dssp             HHHHHHHHHTCCCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCCCHHHHTTCCSHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHCCCccccCcccchhhhcccchhHHHHHHHHHHHHHCCCCCHHHHHhCccHHHHHHHHHHHhc
Confidence            588999999999999999999998789999999999999999999999999999999999999999998754

>d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Hypothetical protein Atu2571
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.78  E-value=2e-19  Score=95.27  Aligned_cols=73  Identities=18%  Similarity=0.337  Sum_probs=65.4

Q ss_pred             ChHHHHHHhhhC--CCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhh--hhccHHHHHHHHHhhhcC
Q 042770            1 DPIISVIKNFQN--VDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEAD--IINTINMAVNFTASHCQG   74 (75)
Q Consensus         1 ~~v~~ii~~~~~--~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~--~~~tv~~l~~~i~~~~~~   74 (75)
                      ++|++++++.++  +++++++++++|. ++|+|||++++++..||++||+++|..++.  ++.|+++++++|.+.+++
T Consensus         3 e~i~~il~~~~~l~~~~~~i~~~~~f~-dlG~DSl~~~~l~~~le~~f~v~i~~~~l~~~~~~Ti~~la~~i~~~~~~   79 (83)
T d2jq4a1           3 ATIREILAKFGQLPTPVDTIADEADLY-AAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVKLILDG   79 (83)
T ss_dssp             HHHHHHHHHTSCCSSCGGGCCTTSCGG-GGTCCHHHHHHHHHHHHHHHSCCCCHHHHSSGGGGCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccCCCHHHcCCCCCHH-HHhCccHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence            368999999865  5788999999997 999999999999999999999999999984  679999999999987653

>d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Actinorhodin polyketide synthase acyl carrier protein, ACT ACP
species: Streptomyces coelicolor, A3(2) [TaxId: 1902]

Probab=99.78  E-value=7.1e-20  Score=97.72  Aligned_cols=71  Identities=20%  Similarity=0.324  Sum_probs=64.3

Q ss_pred             hHHHHHHhhh----CCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770            2 PIISVIKNFQ----NVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ   73 (75)
Q Consensus         2 ~v~~ii~~~~----~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~   73 (75)
                      ++++++.+.+    |+++++++++++|. ++|+||++.++++..++++||+++|+..+.+++|++++++||.+++.
T Consensus         9 ~l~~~l~e~~~~~~g~~~~~i~~d~~f~-dlG~DSl~~~~l~~~l~~~~g~~l~~~~~~~~~Tv~~l~~~i~~~l~   83 (86)
T d2af8a_           9 DLRRALVECAGETDGTDLSGDFLDLRFE-DIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGALA   83 (86)
T ss_dssp             HHHHHHHHTTCCCSCCCCSSCSCSSSHH-HHTCSSHHHHHHHHHHHHHHTCCCCCSTTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccccCCCccccccCCCHH-HcCCCHHHHHHHHHHHHHHHccCcCHHHHHcCCCHHHHHHHHHHHhh
Confidence            4566666654    78899999999995 99999999999999999999999999999999999999999998875

>d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Oxytetracycline polyketide synthase acyl carrier
species: Streptomyces rimosus [TaxId: 1927]

Probab=99.77  E-value=2.1e-19  Score=97.42  Aligned_cols=70  Identities=16%  Similarity=0.278  Sum_probs=64.2

Q ss_pred             HHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770            3 IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ   73 (75)
Q Consensus         3 v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~   73 (75)
                      +++.+++.+|++++++.++++|. ++|+||++.++++..|+++||+++|+..+.++.|++++++||.+++.
T Consensus        13 lre~~~~~~~~~~~~i~~d~~f~-dlG~DSl~~~el~~~le~~~gv~l~~~~~~~~~Ti~~l~~~l~~~l~   82 (95)
T d1nq4a_          13 LRECAGEEESIDLGGDVEDVAFD-ALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNASLT   82 (95)
T ss_dssp             HHHHHTCSSTTCSCSCCSSSCHH-HHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHHHHHHHHHHHH
T ss_pred             HHHHHhHHhCCChhhcccCCCHH-HcCCcHHHHHHHHHHHHHHhcCCCCHHHHhcCCCHHHHHHHHHHhcc
Confidence            45666667788999999999995 99999999999999999999999999999999999999999988763

>d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Frenolicin polyketide synthase acyl carrier protein, Fren ACP
species: Streptomyces roseofulvus [TaxId: 33902]

Probab=99.76  E-value=2.3e-19  Score=95.01  Aligned_cols=73  Identities=18%  Similarity=0.284  Sum_probs=65.1

Q ss_pred             ChHHHHHHhhhCCCCC---CCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770            1 DPIISVIKNFQNVDPF---KVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG   74 (75)
Q Consensus         1 ~~v~~ii~~~~~~~~~---~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~   74 (75)
                      +++++++++.+|....   +.+++++|. ++|+|||+.+++...||++||+++|+..+.+++|++++++||+...++
T Consensus         6 e~l~~il~e~~g~~~~~~~~~d~d~~f~-dlG~DSl~~~el~~~le~~~g~~l~~~~~~~~~Ti~~l~~~v~~~~a~   81 (82)
T d1or5a_           6 DDLKKLLAETAGEDDSVDLAGELDTPFV-DLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTTPAT   81 (82)
T ss_dssp             HHHHHHHHHHSCCCSSCCGGGCSSSCHH-HHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHHHTTCCSC
T ss_pred             HHHHHHHHHHhCCCcccccCCCcCcCHH-HcCCChHhHHHHHHHHHHHHhCcCCHHHHHcCCCHHHHHHHHHhcccC
Confidence            4688999999987543   467789995 999999999999999999999999999999999999999999987654

>d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Acyl-carrier protein (ACP)
domain: Type I fatty acid synthase ACP domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=2.5e-17  Score=85.91  Aligned_cols=66  Identities=21%  Similarity=0.335  Sum_probs=60.1

Q ss_pred             hHHHHHHhhhCC-CCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHH
Q 042770            2 PIISVIKNFQNV-DPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTA   69 (75)
Q Consensus         2 ~v~~ii~~~~~~-~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~   69 (75)
                      ++.+++++.+|+ ++++|+++.+|. ++|+||+.++++...++++||+++|..++.+ .|++++.++..
T Consensus         8 ~l~~~va~~Lgi~~~~~I~~~~~f~-~lG~DSl~a~el~~~i~~~~g~~l~~~~l~~-~Ti~~L~el~a   74 (76)
T d2pnga1           8 DLVKAVAHILGIRDLAGINLDSSLA-DLGLDSLMGVEVRQILEREHDLVLPIREVRQ-LTLRKLQEMSS   74 (76)
T ss_dssp             CGGGTHHHHHTCSSCTTSCSSSCHH-HHTCSSHHHHHHHHHHHHHTCCCCCHHHHTT-CCSHHHHHTSC
T ss_pred             HHHHHHHHHhccCCHhhCCCCCCHH-HhCCcHHHHHHHHHHHHHHhCCCCCHHHHHH-hhHHHHHHHHh
Confidence            577889999998 589999999997 9999999999999999999999999999976 79999987653

>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]}

class: All alpha proteins
fold: Acyl carrier protein-like
superfamily: ACP-like
family: Peptidyl carrier domain
domain: Peptidyl carrier protein (PCP), thioester domain
species: Bacillus brevis [TaxId: 1393]

Probab=99.57  E-value=3.9e-15  Score=77.40  Aligned_cols=65  Identities=15%  Similarity=0.245  Sum_probs=61.2

Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHH
Q 042770            2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTA   69 (75)
Q Consensus         2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~   69 (75)
                      +|.+++++.+|++  .++++++|. ++|.|||.+++++..++++||++++..++....|+++++++|.
T Consensus        11 ~l~~i~~~vL~~~--~i~~~~~f~-~lG~dSl~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~LA~~i~   75 (76)
T d2gdwa1          11 KLAEIWERVLGVS--GIGILDNFF-QIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVA   75 (76)
T ss_dssp             HHHHHHHHHTTSS--CCCTTTTSS-TTTCTTHHHHHHHHHHHHTTSSCCTTHHHHHSCSHHHHHHHHS
T ss_pred             HHHHHHHHHcCCC--CCCCCCCHH-HcCCChHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHhc
Confidence            5789999999985  599999997 9999999999999999999999999999999999999999985

>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.014  Score=26.20  Aligned_cols=20  Identities=35%  Similarity=0.695  Sum_probs=17.1

Q ss_pred             chhHHHHHHHHHHHHhCCcC
Q 042770           31 DNLDFVEIVMALKEEFGFEI   50 (75)
Q Consensus        31 DSl~~v~l~~~le~~f~i~i   50 (75)
                      .=++.++|+.+.|++||+.-
T Consensus        14 SVmdvveLi~amEEKFGVsa   33 (47)
T d2gyc31          14 SVMDVVELISAMEEKFGVSA   33 (47)
T ss_dssp             CHHHHHHHHHHHHHHTCTTT
T ss_pred             hHHHHHHHHHHHHHHhCcch
Confidence            34788999999999999963

>d1dd3a1 a.108.1.1 (A:1-57) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.19  E-value=0.15  Score=23.64  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=18.6

Q ss_pred             CcchhHHHHHHHHHHHHhCCcC
Q 042770           29 GLDNLDFVEIVMALKEEFGFEI   50 (75)
Q Consensus        29 glDSl~~v~l~~~le~~f~i~i   50 (75)
                      ++.=+.+.+|+..+|++||++=
T Consensus        12 ~~tv~El~ELvKalEekfGVsA   33 (57)
T d1dd3a1          12 KLTVSELAELVKKLEDKFGVTA   33 (57)
T ss_dssp             TSCHHHHHHHHHHHHHHHCHHH
T ss_pred             hccHHHHHHHHHHHHHHhCccc
Confidence            4556788999999999999963

>d2oaia1 d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hemolysin TlyC
species: Xylella fastidiosa [TaxId: 2371]

Probab=83.12  E-value=0.66  Score=22.83  Aligned_cols=33  Identities=24%  Similarity=0.266  Sum_probs=19.6

Q ss_pred             HHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770           40 MALKEEFGFEIPDNEADIINTINMAVNFTASHC   72 (75)
Q Consensus        40 ~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~   72 (75)
                      ..+++.||+++|..+-.++.|++.++-....+.
T Consensus        22 ~dl~~~l~~~l~~~e~~~~~Tl~G~i~~~lg~i   54 (87)
T d2oaia1          22 EELREVLGAELPDGEENNYHTLAGMCISYFGRI   54 (87)
T ss_dssp             HHHHHHHTC-------CCCSBHHHHHHHHHSSC
T ss_pred             HHHHHHHCCCCCcccccccccHHHHHHHHhCcC
Confidence            377888999999877778999999865554443

>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.75  E-value=0.79  Score=18.05  Aligned_cols=14  Identities=36%  Similarity=0.845  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHhC
Q 042770           34 DFVEIVMALKEEFG   47 (75)
Q Consensus        34 ~~v~l~~~le~~f~   47 (75)
                      .+.+++..+|+.||
T Consensus        17 elaelvk~ledkfg   30 (30)
T d1zavu1          17 ELAELVKKLEDKFG   30 (30)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhcC
Confidence            46788899999987