Citrus Sinensis ID: 042777

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480--
MDVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDKSDVIKELKQVKEEMEVKERRNLVQAFRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEMDEVRKKENVAKAEIVESALINTRVEFQQVDELENVTEEIREDQNGAFVVISAEEYDLLVKKAVKADEVSMALVECYPIQPESKDELETSKKKLEGATAKIRELRNRVEQAMTRADAAERAKAGLEDQIRRYKERKQKKSAAIVAHKEVSEPKPMNFPTYEKIPATYQPLGKVLNMKF
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHcccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHcccccccccccccEEEEcc
MDVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAagmekdksDMLSRHVSELNEALFKAELVAIEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDKSDVIKELKQVKEEMEVKERRNLVQAFRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEMDEVRKKENVAKAEIVESALINTRVEFQQVDELENVTEEIREDQNGAFVVISAEEYDLLVKKAVKADEVSMALVEcypiqpeskdELETSKKKLEGATAKIRELRNRVEQAMTRADAAERAKAGLEDQIRRYKERKQKKSAAIVAHkevsepkpmnfptyekipatyqplgkvlnmkf
MDVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSIemlsssdksdvIKELKqvkeemevkerRNLVQAFRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEMDEVRKKenvakaeivesalintrvefqqvDELENVTEeiredqngafVVISAEEYDLLVKKAVKADEVSMALVEcypiqpeskdeletskKKLEGATAKIRELRNRVEQAMTRADAAerakagledqirrykerkqkksaaivahkevsepkpmnfptyekipatyqplGKVLNMKF
MDVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKILSEIDaelevakakaakaeeQFEDLKRqlemiqeleielleKSIVSDLLRLELEQSIEMLSSSDKSDVIKELKQVKEEMEVKERRNLVQAFRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEMDEVRKKENVAKAEIVESALINTRVEFQQVDELENVTEEIREDQNGAFVVISAEEYDLLVKKAVKADEVSMALVECYPIQPESKDELETSKKKLEGATAKIRELRNRVEQAMTRADAAERAKAGLEDQIRRYKERKQKKSAAIVAHKEVSEPKPMNFPTYEKIPATYQPLGKVLNMKF
************C*************ALLKLDHYQKIADELSTL*********KYVEECTEARTCIDVLESKLKEMADQLAETARLREQLLHVLNELKA*************************************************LNEALFKAELVAIEAHGEKCKILSEIDAELEVA**************KRQLEMIQELEIELLEKSIVSDLLRLEL*********************************************************************************************AEIVESALINTRVEFQQVDELENVTEEIREDQNGAFVVISAEEYDLLVKKAVKADEVSMALVECYPI***************************************************************************************************
*DVEGLLKDLA********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KVLNMKF
MDVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESA*************HVSELNEALFKAELVAIEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDKSDVIKELKQVKEEMEVKERRNLVQAFRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEMDEVRKKENVAKAEIVESALINTRVEFQQVDELENVTEEIREDQNGAFVVISAEEYDLLVKKAVKADEVSMALVECYPIQPESKDELETSKKKLEGATAKIRELRNRVEQAMTRADAAERAKAGLEDQIRRYK**********VAHKEVSEPKPMNFPTYEKIPATYQPLGKVLNMKF
MDVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDKSDVIKELKQVKEEMEVKERRNLVQAFRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEMDEVRKKENVAKAEIVESALINTRVEFQQVDELENVTEEIREDQNGAFVVISAEEYDLLVKKAVKADEVSMALVECYPIQPESKDELETSKKKLEGATAKIRELRNRVEQAMTRADAAERAKAGLEDQIRRYKERKQKKSAA*********************P*TYQPLGKVLNMKF
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
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MDVEGLLKDLANCKLQLEAKDSAQKQALLKxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTEARTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSIVSDLLRLELEQSIEMLSSSDxxxxxxxxxxxxxxxxxxxxxNLVQAFRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIVESALINTRVEFQQVDELENVTEEIREDQNGAFVVISAEEYDLLVKKAVKADEVSMALVECYPIQPESKDExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIVAHKEVSEPKPMNFPTYEKIPATYQPLGKVLNMKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query482
224124214 621 predicted protein [Populus trichocarpa] 0.991 0.769 0.456 1e-100
255547305559 conserved hypothetical protein [Ricinus 0.962 0.830 0.422 2e-87
297733932508 unnamed protein product [Vitis vinifera] 0.506 0.480 0.516 2e-52
449441073 1558 PREDICTED: probable LRR receptor-like se 0.890 0.275 0.355 7e-44
449477563 1588 PREDICTED: probable LRR receptor-like se 0.890 0.270 0.355 1e-43
147822051237 hypothetical protein VITISV_021413 [Viti 0.396 0.805 0.469 8e-36
224056479 652 predicted protein [Populus trichocarpa] 0.925 0.684 0.281 9e-17
413956613 614 hypothetical protein ZEAMMB73_669890 [Ze 0.410 0.322 0.309 2e-10
357120400474 PREDICTED: uncharacterized protein LOC10 0.431 0.438 0.316 2e-09
255563560 652 Paramyosin, putative [Ricinus communis] 0.923 0.682 0.279 2e-09
>gi|224124214|ref|XP_002330133.1| predicted protein [Populus trichocarpa] gi|222871267|gb|EEF08398.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 254/556 (45%), Positives = 344/556 (61%), Gaps = 78/556 (14%)

Query: 2   DVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTE 61
           DVE LLKDLAN K+Q+ AKDSA  Q LLKL+HYQK ++ELS LLK+SE ER  Y E+C E
Sbjct: 69  DVETLLKDLANYKVQMAAKDSAYSQLLLKLEHYQKSSEELSLLLKKSEVERDVYCEDCRE 128

Query: 62  ARTCIDVLESKLKEMADQLAETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKA 121
           ART I  LE+K+KEM D+L ET ++RE+L HVL+ELK+ +EE+L MET+LA AR + LKA
Sbjct: 129 ARTRIHELEAKVKEMTDELLETGKIREKLTHVLSELKSTEEEILGMETQLATAREVNLKA 188

Query: 122 MTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKILSEIDAELEVA 181
           + +AELM +AA MEK +S+ L +HV+ELNEA+  ++L + EA  EKC +LS+ DA LE A
Sbjct: 189 LAEAELMATAANMEKKRSEELVKHVAELNEAILVSKLASFEAEKEKCMVLSDKDARLESA 248

Query: 182 KAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDK--SDVI 239
              AA+A+EQ ED+K++LE++QELE +LL KS++ D L+ EL Q+ E+LSSS+K  SD +
Sbjct: 249 MEMAAQAQEQVEDMKKRLEIMQELENQLLAKSVLVDSLQAELNQASELLSSSNKTVSDAV 308

Query: 240 KELKQVKEEMEVKERRNLVQAFRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQ 299
           K+L Q+  ++ VKER N    F   ++ETEL+QL+ E+KN NEE   L  N E+L D LQ
Sbjct: 309 KDLNQLNVDLIVKERDNSDHTFYFGALETELNQLEAELKNENEEASHLSRNMEILMDELQ 368

Query: 300 RAKTEMDEVRKKENVAKAEI--VESALINTRVEF-------------------------- 331
            AKT++ E++++E  A+ EI  ++S L   R E                           
Sbjct: 369 EAKTKIYEIKEREKEAQIEIAVLKSELHKGRSELSAAEARSGSVKPGLYLAVQQLAVEAE 428

Query: 332 ------QQVDELENVTEE------IREDQ---------------------------NGAF 352
                 Q++  L+ VTEE      +  DQ                           N   
Sbjct: 429 AAERENQRLKGLDKVTEESEDFGLMHTDQYEKYSCQDVDAFQKNESNAESVKRRNENDGN 488

Query: 353 VVISAEEYDLLVKKAVKADEV------SMALVECYPIQPESKDELETSKKKLEGATAKIR 406
           + IS EEY+ L++KA KA E       +M++     I  E+K E +  KK+LE A  K R
Sbjct: 489 ITISLEEYEFLIRKAEKAGEFLRRESSNMSIT---SITSENKYESQLLKKELEIAIVKNR 545

Query: 407 ELRNRVEQAMTRADAAERAKAGLEDQIRRYKERKQKKSAAIVAHKEVSEPKPMNFPTYEK 466
           ELR R+EQA+TRA+AAE+AK  LEDQ +R +E+KQ+  AAIV   E S  +  +  TY  
Sbjct: 546 ELRTRLEQAVTRAEAAEKAKTILEDQQKRRQEQKQRIKAAIVGLHEESTSREFSSSTYGS 605

Query: 467 IPATYQPLGKVLNMKF 482
            P  YQPLGKVLNMKF
Sbjct: 606 APKEYQPLGKVLNMKF 621

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255547305|ref|XP_002514710.1| conserved hypothetical protein [Ricinus communis] gi|223546314|gb|EEF47816.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297733932|emb|CBI15179.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449441073|ref|XP_004138308.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g74360-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449477563|ref|XP_004155058.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g74360-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147822051|emb|CAN74753.1| hypothetical protein VITISV_021413 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224056479|ref|XP_002298876.1| predicted protein [Populus trichocarpa] gi|222846134|gb|EEE83681.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|413956613|gb|AFW89262.1| hypothetical protein ZEAMMB73_669890 [Zea mays] Back     alignment and taxonomy information
>gi|357120400|ref|XP_003561915.1| PREDICTED: uncharacterized protein LOC100827741 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|255563560|ref|XP_002522782.1| Paramyosin, putative [Ricinus communis] gi|223538020|gb|EEF39633.1| Paramyosin, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query482
TAIR|locus:2176625649 AT5G55860 "AT5G55860" [Arabido 0.865 0.642 0.235 3.4e-16
TAIR|locus:2119206779 AT4G33390 "AT4G33390" [Arabido 0.948 0.586 0.212 2.2e-15
TAIR|locus:2066301807 WEB1 "WEAK CHLOROPLAST MOVEMEN 0.896 0.535 0.223 2.3e-14
SGD|S0000022161790 USO1 "Protein involved in the 0.819 0.220 0.234 5.2e-13
ZFIN|ZDB-GENE-060526-252 1494 golga3 "golgi autoantigen, gol 0.865 0.279 0.209 1.1e-10
ZFIN|ZDB-GENE-071009-2 1307 cgnl1 "cingulin-like 1" [Danio 0.883 0.325 0.206 1.5e-10
TAIR|locus:2825751752 AT1G45545 "AT1G45545" [Arabido 0.931 0.597 0.210 1.5e-10
ZFIN|ZDB-GENE-050208-275 2037 golga4 "golgin A4" [Danio reri 0.869 0.205 0.228 1.5e-10
TAIR|locus:2160046751 AT5G42880 "AT5G42880" [Arabido 0.877 0.563 0.205 2.5e-10
ZFIN|ZDB-GENE-030131-8984 4762 pleca "plectin a" [Danio rerio 0.856 0.086 0.223 3e-10
TAIR|locus:2176625 AT5G55860 "AT5G55860" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 231 (86.4 bits), Expect = 3.4e-16, P = 3.4e-16
 Identities = 106/451 (23%), Positives = 203/451 (45%)

Query:    31 LDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAETARLREQL 90
             ++ Y ++  EL T  KQ   +  +   E  E +T   V  SK++E A ++++    + +L
Sbjct:   152 MEEYGEVCKELDTA-KQELRKIRQVSNEILETKT---VALSKVEE-AKKVSKVHSEKIEL 206

Query:    91 LHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESA--AGMEKDKSDMLSRHVSE 148
             L    E+ A  E +   +   + AR  Q +   + E+ + +  AGME+     L+   +E
Sbjct:   207 LR--KEIAAVNESVEQTKLACSQARKEQSEIFAEKEIQQKSYKAGMEESAKKSLALK-NE 263

Query:   149 LN-EALFKAELVAIEAHGEKCKILSEIDXXXXXXXXXXXXXXXQFEDLKRXXXXXXXXXX 207
              + E   K E+   E + E  ++  +++               +  + K           
Sbjct:   264 FDPEFAKKLEVQLTETYNEIDELQKQMETAKASDIDSVNGVSLELNEAKGLFEKLVEEEK 323

Query:   208 XXXX--KSIVSDLLRLELEQS-IEMLSSSDKS---DVIKELKQVKEEME--VKERRNLVQ 259
                   +S+ ++L  +++E   +E   +  +S   D+  +L + K E+E  V E      
Sbjct:   324 SLQELVESLKAELKNVKMEHDEVEAKEAEIESVAGDLHLKLSRSKSELEQCVTEESKAKA 383

Query:   260 AFRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEMDEVRKKENVAKAEI 319
             A  +E M   ++Q+  E + A  E + +++ A+ L    + A   +++      VA  E 
Sbjct:   384 A--LEDMMLTINQISSETEAARREAEGMRNKAKELMKEAESAHLALEDSELHLRVALDEA 441

Query:   320 VESALINTRV--EFQQVDELENVTEEIREDQNGA-FVVISAEEYDLLVKKAVKADEVSMA 376
              E+    T+   + + + E  N        ++G+  + +S EE+  L K+A   D+++  
Sbjct:   442 EEAKAAETKALEQIKSMSEKTNAARNSTSSESGSQSITLSQEEFKSLSKRAEVFDKLAEM 501

Query:   377 LVECYPIQPES--KDELETSKKKLEGATAKIRELRNRVEQAMTRADAAERAKAGLEDQIR 434
              V     Q E+    E ET KK LE    +I++L+   E+A+ +A  A+ AK  +E ++R
Sbjct:   502 KVAAALAQVEAVRASENETLKK-LETTQEEIKKLKTATEEALKKAAMADAAKKAVEGELR 560

Query:   435 RYKERKQKKS--AA--IVAHKEV---SEPKP 458
             R++ER QKK+  AA  I+A  E+   SE  P
Sbjct:   561 RWRERDQKKAEEAATRILAEAEMKMASESSP 591
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2119206 AT4G33390 "AT4G33390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066301 WEB1 "WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000002216 USO1 "Protein involved in the ER to Golgi transport step of secretion" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060526-252 golga3 "golgi autoantigen, golgin subfamily a, 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-071009-2 cgnl1 "cingulin-like 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2825751 AT1G45545 "AT1G45545" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050208-275 golga4 "golgin A4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2160046 AT5G42880 "AT5G42880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8984 pleca "plectin a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_scaffold_129000042
hypothetical protein (621 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-08
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-07
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-05
pfam05701484 pfam05701, DUF827, Plant protein of unknown functi 2e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-05
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-04
pfam01496 707 pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni 2e-04
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-04
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 8e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.002
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 0.003
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.004
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 55.1 bits (133), Expect = 6e-08
 Identities = 77/345 (22%), Positives = 162/345 (46%), Gaps = 15/345 (4%)

Query: 70  ESKLKEMADQLAETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELME 129
           + +LKE+ ++LAE   L  QL  +  ELK+ + EL S+E  L   R    +   Q E ++
Sbjct: 666 KRELKELEEELAE---LEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELK 722

Query: 130 SAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKILSEIDAELEVAKAKAAKAE 189
                 +++ + L   + EL E L + E    E   E  + L E++ ELE  +   AK +
Sbjct: 723 RELAALEEELEQLQSRLEELEEELEELE----EELEELQERLEELEEELESLEEALAKLK 778

Query: 190 EQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDKSDVIKELKQVKEEM 249
           E+ E+L+ + + +QE   EL E+   ++     LE+ +E L    +  + +E+++++EE+
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESL-EQRRERLEQEIEELEEEI 837

Query: 250 EVKERRNLVQAFRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEMDEVR 309
           E  E        +++ +E EL +L+ E++   EE++ L++  E L D L+  + E +E+ 
Sbjct: 838 EELEE-------KLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE 890

Query: 310 KKENVAKAEIVESALINTRVEFQQVDELENVTEEIREDQNGAFVVISAEEYDLLVKKAVK 369
           ++    ++E+ E      ++  +  +    +     E       +    E  L  +   +
Sbjct: 891 EELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELERE 950

Query: 370 ADEVSMALVECYPIQPESKDELETSKKKLEGATAKIRELRNRVEQ 414
            + +   +    P+   + +E E  +++ E   ++  +L    E+
Sbjct: 951 IERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEK 995

Length = 1163
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827) Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 482
PF05701522 WEMBL: Weak chloroplast movement under blue light; 100.0
PF05701522 WEMBL: Weak chloroplast movement under blue light; 98.97
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 97.45
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 97.41
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 97.32
COG11961163 Smc Chromosome segregation ATPases [Cell division 96.97
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.95
PRK02224 880 chromosome segregation protein; Provisional 96.91
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.88
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.69
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.65
TIGR006061311 rad50 rad50. This family is based on the phylogeno 96.37
PF00038312 Filament: Intermediate filament protein; InterPro: 96.31
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 95.7
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 95.53
KOG0977546 consensus Nuclear envelope protein lamin, intermed 95.46
KOG0996 1293 consensus Structural maintenance of chromosome pro 95.43
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 95.37
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 95.03
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 94.19
COG4372499 Uncharacterized protein conserved in bacteria with 94.08
PRK11637428 AmiB activator; Provisional 94.04
KOG0971 1243 consensus Microtubule-associated protein dynactin 93.93
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 93.86
PF10174775 Cast: RIM-binding protein of the cytomatrix active 93.83
PRK02224 880 chromosome segregation protein; Provisional 92.87
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 92.54
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 92.02
KOG0971 1243 consensus Microtubule-associated protein dynactin 91.68
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 91.58
PRK03918880 chromosome segregation protein; Provisional 91.29
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 90.96
KOG0996 1293 consensus Structural maintenance of chromosome pro 88.81
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 88.36
PF11570136 E2R135: Coiled-coil receptor-binding R-domain of c 88.02
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 87.74
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 87.63
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 87.49
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 86.99
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 86.44
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 84.86
PRK11637428 AmiB activator; Provisional 84.65
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 84.56
PF00038312 Filament: Intermediate filament protein; InterPro: 84.44
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 83.04
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 80.62
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information 
Probab=100.00  E-value=1.3e-67  Score=567.90  Aligned_cols=406  Identities=30%  Similarity=0.362  Sum_probs=366.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHH----HH
Q 042777            2 DVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKE----MA   77 (482)
Q Consensus         2 el~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~----~~   77 (482)
                      +|+.+|+||++||+|+.++|.+|++|++||++|||+|++|+++|+.++.++.+|++|++++++|+++|++|+++    .|
T Consensus        35 eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~  114 (522)
T PF05701_consen   35 ELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAW  114 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999985    58


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhH
Q 042777           78 DQLAETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAE  157 (482)
Q Consensus        78 k~~Le~~~areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~  157 (482)
                      +++|++  +|+||+.++++|++||+||.++|++|++++++|+.|+++|++|+++++.|.++|++|+.||+++|++|++++
T Consensus       115 k~ele~--~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~  192 (522)
T PF05701_consen  115 KAELES--AREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAK  192 (522)
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999  999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhccc----
Q 042777          158 LVAIEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSIEMLSSS----  233 (482)
Q Consensus       158 ~A~~eAeee~~~i~~e~~~~~~~~~~~l~qae~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s----  233 (482)
                      ++|++|++++++|++++++++..|+..|+++++++..|+++++.+++|+++|..++.+|..|+.+|+.+++.....    
T Consensus       193 ~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~  272 (522)
T PF05701_consen  193 LAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEA  272 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999886632222    


Q ss_pred             ----------chhHHHHHHHHHHHHHH-HHHHhhhhhhhcHHHHHHHHHHHHHHHHHHH---------------------
Q 042777          234 ----------DKSDVIKELKQVKEEME-VKERRNLVQAFRIESMETELHQLKLEVKNAN---------------------  281 (482)
Q Consensus       234 ----------~k~~~~~EL~e~k~~le-~k~e~~~~~~~sv~sL~~EL~~~~~Ele~ar---------------------  281 (482)
                                +. .++.||++++.+|+ ++++.++++. +|+||+.||.+++.++..++                     
T Consensus       273 ~~~~~~~~~~l~-s~~~ELe~ak~~L~~~k~E~~~L~~-~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r  350 (522)
T PF05701_consen  273 KEKSSELQSSLA-SAKKELEEAKKELEKAKEEASSLRA-SVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTR  350 (522)
T ss_pred             hhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Confidence                      22 37889999999998 9999999999 79999999999988843322                     


Q ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
Q 042777          282 --------------EEMDSLKSNAEMLTDLLQRAKTEMDEVRKK-----------------------ENVAKAEIVESAL  324 (482)
Q Consensus       282 --------------~~~~~l~~~l~~l~~E~e~Ak~~~~~a~~~-----------------------~a~~e~E~aka~~  324 (482)
                                    ..+..|+..++++..|++.||..+..++.+                       .+..+++++|+++
T Consensus       351 ~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasE  430 (522)
T PF05701_consen  351 SELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASE  430 (522)
T ss_pred             HHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          245557777888888888888777766653                       4555555556666


Q ss_pred             HchhHHHHHHHHHHHHh---HhhhhccCCCceeecHHHHHHHHhHHHHHHHhHHHhhhhhcccc--cchhhhhhHHHHHH
Q 042777          325 INTRVEFQQVDELENVT---EEIREDQNGAFVVISAEEYDLLVKKAVKADEVSMALVECYPIQP--ESKDELETSKKKLE  399 (482)
Q Consensus       325 ~~l~~Al~~ik~l~e~s---~~s~~~~~~~~ITiS~eEYe~Ls~ka~eaEe~a~~kVaaA~~qv--ak~sE~e~l~~kLE  399 (482)
                      ..   |+++|++|++..   +.+.+. +|++||||+|||++|++||++++++|++||++||++|  +|+|++++| +||+
T Consensus       431 a~---Ala~ik~l~e~~~~~~~~~~~-~~~~Vtls~eEy~~L~~ka~e~ee~a~kkva~A~aqve~ak~se~e~l-~kle  505 (522)
T PF05701_consen  431 AL---ALAEIKALSESESSSRASDSE-SSSKVTLSLEEYESLSKKAEEAEELAEKKVAAAMAQVEAAKASEKEIL-EKLE  505 (522)
T ss_pred             HH---HHHHHHHhhcccccccccccC-CCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            55   999999998752   122223 7899999999999999999999999999999999777  999999999 9999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 042777          400 GATAKIRELRNRVEQAM  416 (482)
Q Consensus       400 ~~~keiee~k~ale~Al  416 (482)
                      ++.++|+++|.+|+.||
T Consensus       506 ~~~~e~~~~k~al~~Al  522 (522)
T PF05701_consen  506 EAMKEIEERKEALEEAL  522 (522)
T ss_pred             HHHHHHHHHHHHHHhhC
Confidence            99999999999999985

Several sequences in this family are described as being myosin heavy chain-like.
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query482
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 8e-12
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-11
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 8e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-06
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 8e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 66.8 bits (163), Expect = 8e-12
 Identities = 60/357 (16%), Positives = 142/357 (39%), Gaps = 37/357 (10%)

Query: 100  AQEELLSMETELAAARGLQLKAMTQ-AELMESAAGMEKDKSDMLSRHVSELNEALFKAEL 158
             +EE+ + + EL   +  Q KA  +  EL +    + ++K+ +  +  +E        E+
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914

Query: 159  VAIEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDL 218
                A   K + L EI  E+E    +  +  +Q +  K++++     ++  LE+ +    
Sbjct: 915  RVRLA--AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQ----QMLDLEEQLE--- 965

Query: 219  LRLELEQSIEMLSSSDKSDVIKELKQVKEEMEVKERRNLVQAFRIESMETELHQLKLEVK 278
               E E + + L   +K     ++K++++++ + E        +   +  E   L+  V 
Sbjct: 966  ---EEEAARQKLQL-EKVTADGKIKKMEDDILIMED-------QNNKLTKERKLLEERVS 1014

Query: 279  NANEEMDSLKSNAEMLTDLLQRAKTEMDEVRKKENVAKAEIVESALINTRVEFQQVDELE 338
            +    +   +  A+ LT L  + ++ + E+  +    +    E   I  ++E     E  
Sbjct: 1015 DLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE----GESS 1070

Query: 339  NVTEEIREDQNGAFVVISAEEYDLLVKKAVKADEVSMALVECYPIQPESKDELETSKKKL 398
            ++ E+I E Q          E    + K  +  + ++A +E      +   +   + KK+
Sbjct: 1071 DLHEQIAELQA------QIAELKAQLAKKEEELQAALARLE------DETSQKNNALKKI 1118

Query: 399  EGATAKIRELRNRVEQAMTRADAAERAKAGLEDQIRRYKERKQKKSAAIVAHKEVSE 455
                + I +L+  +E      + AE+ K  L +++   K   +         +E+  
Sbjct: 1119 RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query482
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.6
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.4
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.1
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 94.22
3swk_A86 Vimentin; cytoskeleton, intermediate filament, alp 92.51
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 90.28
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 90.25
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 89.34
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 87.56
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 81.71
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=97.60  E-value=0.044  Score=50.59  Aligned_cols=53  Identities=13%  Similarity=0.077  Sum_probs=33.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Q 042777            3 VEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKY   55 (482)
Q Consensus         3 l~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A   55 (482)
                      +|.+++.|..++.++.........+..+|...+..+..+...+......-...
T Consensus         1 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~   53 (284)
T 1c1g_A            1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKAT   53 (284)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36677777777777777766666666666666666666666655554433333
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00