Citrus Sinensis ID: 042785

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600----
VVAQKLKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEMKIKKLMPMDAESRVYDALQKKYLKTLLFCVCEAVEGPMIEEYAFSFSYSDSDSQEISMNINRTGNKKKGGTFKCNTTTEITTTQMRSSACKMVRTLVQLMRTLDRMPEERTILMKLFYYDDVTPVDYEPPFFRCCSEEEAHNPWTKNPLKMEVGNVNSKHFVLALKVKSVLDPCEDENDDMQDDEVSLGADSVQRDESSDSDSEVSQPQEDQYIVAPIVEVTMVILADKQQPEEDNGMVDEDNTQDPEEDEQQLVRVKDWINCRHLHSVELTDVLSNFPDISVLVKEGLLSKGGKDTYTINKQEKFNYEFALVKEEMDGVTLCDKSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALDIDFMEIETNEPLNKSDHQEFRKIGSKHMDTSTCGLLHSVGSDVTRTKGRSDIHQSGSFRSEQAISKAKVGNTPTSRAGPVASRESFAPGNEKIRTNGSTNNCDEVDDIMCSRSTQDKRLRKTSTVKEPILQQVKRQKSLAMCV
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccHHHHHHHHHHHccccEEEEEEEEccccccEEEEEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHccccccccccccccccccccccHHHHHHHccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEHHHHHHHHHHHHHHHccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccc
cHHHHccHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccHHHEHcHHHHHHHHHHHHHHHHHHHHEEHEEccccccEEEEEEEEEEEccccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEcccccccccccccccccccccEEEcccccEEEEEEEEccccEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccEEcccHHHcccccEEEEccccEcccccccEEEEcccccccccEEEEHHcccccccccccccHHHHHHHHHHHHccccEEEHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccEEEHcHHHHHHHHHHHHHHccHccccccccccccccccccEEcccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccHHcccccccEEEEcccccccccccccEccccccccccccccHcccHHHHHHHHccccEEEc
VVAQKLKEAEITEQDSLLLTRNLLRIAIFNISyirglfpenyfndksvpALEMKIKKLMPMDAESRVYDALQKKYLKTLLFCVCeavegpmieeyafsfsysdsdsqEISMNINrtgnkkkggtfkcnttteitttQMRSSACKMVRTLVQLMRTLDRMPEERTILMKLFyyddvtpvdyeppffrccseeeahnpwtknplkmevgnvnsKHFVLALKVksvldpcedenddmqddevslgadsvqrdessdsdsevsqpqedqyivaPIVEVTMVILAdkqqpeedngmvdedntqdpeedEQQLVRVKDwincrhlhsveltdvlsnfpdiSVLVKEGllskggkdtytinkQEKFNYEFALVKEemdgvtlcdkspqldDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEakgsrrlgkrviHSTLTKKKLMEAKKAldidfmeietneplnksdhQEFRKigskhmdtstcgllhsvgsdvtrtkgrsdihqsgsfrseQAISKakvgntptsragpvasresfapgnekirtngstnncdevddimcsrstqdkrlrktstvkepiLQQVKRQKSLAMCV
vvaqklkeaeiteqdslllTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEMKIKKLMPMDAESRVYDALQKKYLKTLLFCVCEAVEGPMIEEYAFSFSYSDSDSQEISMNInrtgnkkkggtfkcnttteitttqmrssaCKMVRTLVQLMRTLDRMPEERTILMKLFYYDDVTPVDYEPPFFRCCSEEeahnpwtknpLKMEVGNVNSKHFVLALKVKSVLDPCEDENDDMQDDEVSLGADsvqrdessdsdsevsqpqedqYIVAPIVEVTMVILADKQQPEEDNGMVDEDNTQDPEEDEQQLVRVKDWINCRHLHSveltdvlsnfPDISVLVKEgllskggkdtytinkqEKFNYEFALVKEEMDGVTLCDKSPQLDDQIYMKALYYALSMNYVTIAKLQkkldkeanqSTVRKLIDKMIREgyveakgsrrlgkrvihstltkkklmeakkaldiDFMEietneplnksdHQEFRKIGSKHMDTSTCGLLhsvgsdvtrtkgrsdihqsgsfrseqaiskakvgntptsragpvasresfapgnekirtngstnncdevddimcsrstqdkrlrktstvkepilqqvkrqkslamcv
VVAQKLKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEMKIKKLMPMDAESRVYDALQKKYLKTLLFCVCEAVEGPMIeeyafsfsysdsdsQEISMNINRTGNKKKGGTFKCNTTTEITTTQMRSSACKMVRTLVQLMRTLDRMPEERTILMKLFYYDDVTPVDYEPPFFRCCSEEEAHNPWTKNPLKMEVGNVNSKHFVLALKVKSVLDPCEDENDDMQDDEVSLGAdsvqrdessdsdsevsqpqedqYIVAPIVEVTMVILADKQQPEEDNGMVDEDNTQDPEEDEQQLVRVKDWINCRHLHSVELTDVLSNFPDISVLVKEGLLSKGGKDTYTINKQEKFNYEFALVKEEMDGVTLCDKSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALDIDFMEIETNEPLNKSDHQEFRKIGSKHMDTSTCGLLHSVGSDVTRTKGRSDIHQSGSFRSEQAISKAKVGNTPTSRAGPVASRESFAPGNEKIRTNGSTNNCDEVDDIMCSRSTQDKRLRKTSTVKEPILQQVKRQKSLAMCV
***************SLLLTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEMKIKKLMPMDAESRVYDALQKKYLKTLLFCVCEAVEGPMIEEYAFSFSY***********************FKCNTTTEITTTQMRSSACKMVRTLVQLMRTLDRMPEERTILMKLFYYDDVTPVDYEPPFFRCCSEEEAHNPWTKNPLKMEVGNVNSKHFVLALKVKSVL*****************************************YIVAPIVEVTMVILA**************************LVRVKDWINCRHLHSVELTDVLSNFPDISVLVKEGLLSKGGKDTYTINKQEKFNYEFALVKEEMDGVTLCDKSPQLDDQIYMKALYYALSMNYVTIAKLQKKLD*****STVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALDIDFM*******************************************************************************************************************************************
****************LLLTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEMKIKKLMPMDAESRVYDALQKKYLKTLLFCVCEAVEGPMIEEYAFSFSYSDSD***********************************SACKMVRTLVQLMRTLDRMPEERTILMKLFYYDDVTPVDYEPPFFRCCSEEEAHNPWTKNPLKMEVGNVNSKHFVLALKVKSVLDPCE*********************************************************************************VKDWINCRHLHSVELTDVLSNFPDISVL******************QEKFNYEF*********************QIYMKALYYALSMNYVTIAKLQ**LD**ANQSTVRKLIDKMIREGYV*********KRVIHSTLTKKKLMEAKKALDI*******************************CGLLHSVGSDVT*************************************************************************************LQQVKRQ***A*CV
VVAQKLKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEMKIKKLMPMDAESRVYDALQKKYLKTLLFCVCEAVEGPMIEEYAFSFSYSDSDSQEISMNINRTGNKKKGGTFKCNTTTEITTTQMRSSACKMVRTLVQLMRTLDRMPEERTILMKLFYYDDVTPVDYEPPFFRCCSEEEAHNPWTKNPLKMEVGNVNSKHFVLALKVKSVLDPCEDENDDMQDDEVSL*********************EDQYIVAPIVEVTMVILADKQQ********************QQLVRVKDWINCRHLHSVELTDVLSNFPDISVLVKEGLLSKGGKDTYTINKQEKFNYEFALVKEEMDGVTLCDKSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALDIDFMEIETNEPLNKSDHQEFRKIGSKHMDTSTCGLLHSVGSDVTRTKGRSDIHQSGSFR***********************RESFAPGNEKIRTNGSTNNCDEVDDIMCSRSTQDKRLRKTSTVKEPILQQV**********
V****LKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEMKIKKLMPMDAESRVYDALQKKYLKTLLFCVCEAVEGPMIEEYAFSFSYSDSDSQEISMNINR****************EITTTQMRSSACKMVRTLVQLMRTLDRMPEERTILMKLFYYDDVTPVDYEPPFFRCCSEEEAHNPWTKNPLKMEVGNVNSKHFVLALKVKSVLDPC**********************************************************************QDPEEDEQQLVRVKDWINCRHLHSVELTDVLSNFPDISVLVKEGLLSKGGKDTYTINKQEKFNYEFALVKEEMDGVTLCDKSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALDIDFMEIE***********************ST****************************************************************************************KTSTVKEPILQQVKRQKSLAMCV
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VVAQKLKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEMKIKKLMPMDAESRVYDALQKKYLKTLLFCVCEAVEGPMIEEYAFSFSYSDSDSQEISMNINRTGNKKKGGTFKCNTTTEITTTQMRSSACKMVRTLVQLMRTLDRMPEERTILMKLFYYDDVTPVDYEPPFFRCCSEEEAHNPWTKNPLKMEVGNVNSKHFVLALKVKSVLDPCEDENDDMQDDEVSLGADSVQRDESSDSDSEVSQPQEDQYIVAPIVEVTMVILADKQQPEEDNGMVDEDNTQDPEEDEQQLVRVKDWINCRHLHSVELTDVLSNFPDISVLVKEGLLSKGGKDTYTINKQEKFNYEFALVKEEMDGVTLCDKSPQLDDQIYMKALYYALSMNYVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKALDIDFMEIETNEPLNKSDHQEFRKIGSKHMDTSTCGLLHSVGSDVTRTKGRSDIHQSGSFRSEQAISKAKVGNTPTSRAGPVASRESFAPGNEKIRTNGSTNNCDEVDDIMCSRSTQDKRLRKTSTVKEPILQQVKRQKSLAMCV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query604 2.2.26 [Sep-21-2011]
Q5M7C8386 HORMA domain-containing p N/A no 0.307 0.481 0.314 3e-21
D3ZWE7392 HORMA domain-containing p yes no 0.312 0.482 0.302 7e-20
Q4R8B9394 HORMA domain-containing p N/A no 0.312 0.479 0.284 1e-19
Q86X24394 HORMA domain-containing p yes no 0.312 0.479 0.284 3e-19
Q9D5T7392 HORMA domain-containing p yes no 0.312 0.482 0.293 1e-18
A2BF66356 HORMA domain-containing p no no 0.354 0.601 0.287 4e-18
Q2KIY6393 HORMA domain-containing p yes no 0.312 0.480 0.284 6e-18
E2RSQ2395 HORMA domain-containing p yes no 0.309 0.473 0.295 1e-17
E2IUK4394 HORMA domain-containing p yes no 0.309 0.474 0.295 1e-17
Q5SQP1306 HORMA domain-containing p no no 0.339 0.669 0.279 1e-16
>sp|Q5M7C8|HORM1_XENLA HORMA domain-containing protein 1 OS=Xenopus laevis GN=hormad1 PE=2 SV=1 Back     alignment and function desciption
 Score =  103 bits (258), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 40/226 (17%)

Query: 12  TEQDSLLLTRNLLRIAIFNISYIRGLFPENYFN--------------DKSVPALEMKIKK 57
           TE  SL+L + LL +++  I+Y+RGLFPE  +               DKS P     +K 
Sbjct: 22  TETQSLILVKRLLAVSVSCITYLRGLFPEYAYGTRYLDDICVKILREDKSCPGSTQLVKW 81

Query: 58  LMPMDAESRVYDALQKKYLKTLLFCVCEAVEGP--MIEEYAFSFSYSDSDSQEISMNINR 115
           ++        YDALQKKYL+ ++  +    E P  + E Y F F Y+ S      M+   
Sbjct: 82  ML------GCYDALQKKYLRMVMLAIYTDPEDPQTVTECYQFKFKYTASGP---VMD--- 129

Query: 116 TGNKKKGGTFKCNTTTEITT-TQMRSSACKMVRTLVQLMRTLDRMPEERTILMKLFYYDD 174
                    F  N +  ++T +  + ++  ++R L  LM+ L  +P +  + MKLFYYD+
Sbjct: 130 ---------FVSNNSNSVSTCSDAKKTSILLIRKLYILMQNLGPLPNDVCLTMKLFYYDE 180

Query: 175 VTPVDYEPPFFRCCSEEEAHNPWTKNPLKMEVGNVNSKHFVLALKV 220
           VTP DY+PP F+  + E     +   P+ + VG V +   VL +KV
Sbjct: 181 VTPADYQPPGFKEGTCEGLM--FEGEPMYLNVGEVATPFHVLKVKV 224
Plays a key role in meiotic progression by ensuring that sufficient numbers of processed DNA double-strand breaks (DSBs) are available for successful homology search, promoting synaptonemal-complex formation independently and playing key role in the male mid-pachytene checkpoint and the female meiotic prophase checkpoint.
Xenopus laevis (taxid: 8355)
>sp|D3ZWE7|HORM1_RAT HORMA domain-containing protein 1 OS=Rattus norvegicus GN=Hormad1 PE=3 SV=1 Back     alignment and function description
>sp|Q4R8B9|HORM1_MACFA HORMA domain-containing protein 1 OS=Macaca fascicularis GN=HORMAD1 PE=2 SV=1 Back     alignment and function description
>sp|Q86X24|HORM1_HUMAN HORMA domain-containing protein 1 OS=Homo sapiens GN=HORMAD1 PE=2 SV=1 Back     alignment and function description
>sp|Q9D5T7|HORM1_MOUSE HORMA domain-containing protein 1 OS=Mus musculus GN=Hormad1 PE=1 SV=1 Back     alignment and function description
>sp|A2BF66|HORM1_DANRE HORMA domain-containing protein 1 OS=Danio rerio GN=hormad1 PE=2 SV=1 Back     alignment and function description
>sp|Q2KIY6|HORM1_BOVIN HORMA domain-containing protein 1 OS=Bos taurus GN=HORMAD1 PE=2 SV=2 Back     alignment and function description
>sp|E2RSQ2|HORM1_CANFA HORMA domain-containing protein 1 OS=Canis familiaris GN=HORMAD1 PE=3 SV=1 Back     alignment and function description
>sp|E2IUK4|HORM1_PIG HORMA domain-containing protein 1 OS=Sus scrofa GN=HORMAD1 PE=2 SV=1 Back     alignment and function description
>sp|Q5SQP1|HORM2_MOUSE HORMA domain-containing protein 2 OS=Mus musculus GN=Hormad2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query604
225425426662 PREDICTED: uncharacterized protein LOC10 0.980 0.894 0.715 0.0
255547722613 protein with unknown function [Ricinus c 0.978 0.964 0.725 0.0
356569176662 PREDICTED: uncharacterized protein LOC10 0.980 0.894 0.649 0.0
357463013613 HORMA domain-containing protein [Medicag 0.970 0.955 0.651 0.0
449494543610 PREDICTED: uncharacterized protein LOC10 0.958 0.949 0.665 0.0
449450582 1024 PREDICTED: uncharacterized protein LOC10 0.933 0.550 0.676 0.0
356538085637 PREDICTED: uncharacterized protein LOC10 0.955 0.905 0.637 0.0
297738451527 unnamed protein product [Vitis vinifera] 0.849 0.973 0.689 0.0
297841423596 meiotic asynaptic mutant 1 [Arabidopsis 0.948 0.961 0.644 0.0
23506946599 aysnaptic 1 [Brassica oleracea var. albo 0.948 0.956 0.630 0.0
>gi|225425426|ref|XP_002271582.1| PREDICTED: uncharacterized protein LOC100267642 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  894 bits (2310), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/625 (71%), Positives = 512/625 (81%), Gaps = 33/625 (5%)

Query: 1   VVAQKLKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEMKIKKLMP 60
           VVAQKLKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPE YFNDKSVPALEMKIKKLMP
Sbjct: 48  VVAQKLKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPEKYFNDKSVPALEMKIKKLMP 107

Query: 61  MDAESR---------VYDALQKKYLKTLLFCVCEAVEGPMIEEYAFSFSYSDSDSQEISM 111
           MDAESR         VYDALQKKYLKTL+FCVCEA+EGPMIEEYAFSFSYS+SDSQE+SM
Sbjct: 108 MDAESRRLIDWMEKGVYDALQKKYLKTLMFCVCEAIEGPMIEEYAFSFSYSNSDSQEVSM 167

Query: 112 NINRTGNKKKGGTFKCNTTTEITTTQMRSSACKMVRTLVQLMRTLDRMPEERTILMKLFY 171
           N+NRTG KK GGTFKCN+ TE+T  QMRSSACKMVRTLVQLMRTLDRMPEERTILMKL Y
Sbjct: 168 NVNRTGTKK-GGTFKCNSATEVTPNQMRSSACKMVRTLVQLMRTLDRMPEERTILMKLLY 226

Query: 172 YDDVTPVDYEPPFFRCCSEEEAHNPWTKNPLKMEVGNVNSKHFVLALKVKSVLDPCEDEN 231
           YDDVTPVDYEPPFFR C+EEEAH  W KNPLKMEVGNVNSKH VLALKVKSVLDPCEDEN
Sbjct: 227 YDDVTPVDYEPPFFRSCTEEEAHISWNKNPLKMEVGNVNSKHLVLALKVKSVLDPCEDEN 286

Query: 232 DDMQDDEVSLGADSVQRDESSDSDSEVSQPQEDQYIVAPIVEVTMVILADKQQPEEDNGM 291
           +D+Q+D+VSLGADSVQRDE S+SDSEV+  Q DQYIVAP+         DKQ+P ED GM
Sbjct: 287 EDIQNDDVSLGADSVQRDEYSESDSEVNLSQRDQYIVAPV---------DKQKPPEDTGM 337

Query: 292 VDEDNTQDPEEDEQQLVRVKDWINCRHLHSVELTDVLSNFPDISV---------LVKEGL 342
           VDED+TQD  EDEQQL RVKDWI+C HL ++ELTDVLSNFPDISV         LVKEG+
Sbjct: 338 VDEDDTQDSVEDEQQLSRVKDWISCCHLDTIELTDVLSNFPDISVVLTEEIMDKLVKEGV 397

Query: 343 LSKGGKDTYTINKQEKFNYEFALVKEEM--DGVTLCDKSPQL--DDQIYMKALYYALSMN 398
           LSK GKD YTI +Q++  YEF  VKEEM    + + DK  Q   +D +YMKALYYAL MN
Sbjct: 398 LSKTGKDAYTIKRQKECEYEFDAVKEEMGAQALPINDKVDQAMGEDHMYMKALYYALPMN 457

Query: 399 YVTIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKK 458
           YVT+ KLQ  L  +ANQ+TVRKLID+M ++G+++AK +RRLGKRVIHS LT+KKL+E  K
Sbjct: 458 YVTVPKLQNMLQGQANQTTVRKLIDRMTQDGFIDAKSNRRLGKRVIHSDLTEKKLIEVTK 517

Query: 459 ALDIDFMEIETNEPLNKSDHQEFRKIGSKHMDTSTCGLLHSVGSDVTRTKGRSDIHQSGS 518
           +L+ + M+++ +EP + S+H  F   GS   D STCG+LHS+GSD+TR +GRSD++Q+GS
Sbjct: 518 SLNNEAMDLDVSEPHDNSNHLGFHTNGSNLKDMSTCGVLHSIGSDLTRMRGRSDVYQNGS 577

Query: 519 FRSEQAISKA-KVGNTPTSRAGPVASRESFAPGNEKIRTNGSTNNCDEVDDIMCSRSTQD 577
            RSEQ ISK    GNTPTSR  P+ASRESFAPG++  R NG+TN  DEVD I+CSRSTQD
Sbjct: 578 IRSEQTISKTLGQGNTPTSRVEPIASRESFAPGSDNTRANGNTNYGDEVDAIICSRSTQD 637

Query: 578 KRLRKTSTVKEPILQQVKRQKSLAM 602
           KR RK STVKEPILQ +KR+K+ A+
Sbjct: 638 KRSRKASTVKEPILQYLKRRKAQAI 662

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255547722|ref|XP_002514918.1| protein with unknown function [Ricinus communis] gi|223545969|gb|EEF47472.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
>gi|356569176|ref|XP_003552781.1| PREDICTED: uncharacterized protein LOC100792473 [Glycine max] Back     alignment and taxonomy information
>gi|357463013|ref|XP_003601788.1| HORMA domain-containing protein [Medicago truncatula] gi|355490836|gb|AES72039.1| HORMA domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449494543|ref|XP_004159576.1| PREDICTED: uncharacterized protein LOC101229074 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449450582|ref|XP_004143041.1| PREDICTED: uncharacterized protein LOC101204959 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356538085|ref|XP_003537535.1| PREDICTED: uncharacterized protein LOC100790032 [Glycine max] Back     alignment and taxonomy information
>gi|297738451|emb|CBI27652.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297841423|ref|XP_002888593.1| meiotic asynaptic mutant 1 [Arabidopsis lyrata subsp. lyrata] gi|297334434|gb|EFH64852.1| meiotic asynaptic mutant 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|23506946|gb|AAN37925.1|AF410429_1 aysnaptic 1 [Brassica oleracea var. alboglabra] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query604
TAIR|locus:2019569596 ASY1 "AT1G67370" [Arabidopsis 0.947 0.959 0.603 5e-179
UNIPROTKB|Q76CY8610 OsASY1 "Essential protein for 0.950 0.940 0.531 3.4e-148
TAIR|locus:2116510 1399 ASY2 "AT4G32200" [Arabidopsis 0.211 0.091 0.535 5.5e-52
UNIPROTKB|H9L0N5394 HORMAD1 "Uncharacterized prote 0.336 0.515 0.301 2e-16
UNIPROTKB|Q5M7C8386 hormad1 "HORMA domain-containi 0.336 0.525 0.286 1.5e-15
RGD|1564960392 Hormad1 "HORMA domain containi 0.341 0.525 0.296 2e-15
ZFIN|ZDB-GENE-040718-49356 hormad1 "HORMA domain containi 0.354 0.601 0.264 4.9e-15
MGI|MGI:1915231392 Hormad1 "HORMA domain containi 0.341 0.525 0.287 5.1e-15
UNIPROTKB|E1C2C4283 HORMAD2 "Uncharacterized prote 0.326 0.696 0.277 4.6e-14
UNIPROTKB|Q86X24394 HORMAD1 "HORMA domain-containi 0.341 0.522 0.278 8.3e-14
TAIR|locus:2019569 ASY1 "AT1G67370" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1738 (616.9 bits), Expect = 5.0e-179, P = 5.0e-179
 Identities = 376/623 (60%), Positives = 444/623 (71%)

Query:     1 VVAQKLKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEMKIKKLMP 60
             V+AQKLKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPE YFNDKSVPAL+MKIKKLMP
Sbjct:     2 VMAQKLKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPEKYFNDKSVPALDMKIKKLMP 61

Query:    61 MDAESR---------VYDALQKKYLKTLLFCVCEAVEGPMIXXXXXXXXXXXXXXQEISM 111
             MDAESR         VYDALQ+KYLKTL+F +CE V+GPMI              Q++ M
Sbjct:    62 MDAESRRLIDWMEKGVYDALQRKYLKTLMFSICETVDGPMIEEYSFSFSYSDSDSQDVMM 121

Query:   112 NINRTGNKKKGGTFKCNTTTEITTTQMRSSACKMVRTLVQLMRTLDRMPEERTILMKLFY 171
             NINRTGNKK GG F  N+T +IT  QMRSSACKMVRTLVQLMRTLD+MP+ERTI+MKL Y
Sbjct:   122 NINRTGNKKNGGIF--NSTADITPNQMRSSACKMVRTLVQLMRTLDKMPDERTIVMKLLY 179

Query:   172 YDDVTPVDYEPPFFRCCSEEEAHNPWTKNPLKMEVGNVNSKHFVLALKVKSVLDPCEDEN 231
             YDDVTP DYEPPFFR C+E+EA   WTKNPL+ME+GNVNSKH VL LKVKSVLDPCEDEN
Sbjct:   180 YDDVTPPDYEPPFFRGCTEDEAQYVWTKNPLRMEIGNVNSKHLVLTLKVKSVLDPCEDEN 239

Query:   232 DDMQDDEVSLGAXXXXXXXXXXXXXXXXXXXXXXYIVAPIVEVTMVILADKQQPEEDNGM 291
             DDMQDD  S+G                       +IVAP+         +KQ  ++D+G 
Sbjct:   240 DDMQDDGKSIGPDSVHDDQPSDSDSEISQTQENQFIVAPV---------EKQ--DDDDGE 288

Query:   292 VDED-NTQDPEEDEQQLVRVKDWINCRHLHSVELTDVLSNFPDISV---------LVKEG 341
             VDED NTQDP E+EQQL RVKDWIN RHL ++ELTD+L+NFPDIS+         LV EG
Sbjct:   289 VDEDDNTQDPAENEQQLARVKDWINSRHLDTLELTDILANFPDISIVLSEEIMDQLVTEG 348

Query:   342 LLSKGGKDTYTINKQEKF-NYEFALVKEEMDGVTLCDKSPQLDDQIYMKALYYALSMNYV 400
             +LSK GKD Y I K++K    EF  VKEE DG     KS   +D +YMKALY++L M YV
Sbjct:   349 VLSKTGKDMY-IKKRDKTPESEFTFVKEEADGQISPGKSVAPEDYLYMKALYHSLPMKYV 407

Query:   401 TIAKLQKKLDKEANQSTVRKLIDKMIREGYVEAKGSRRLGKRVIHSTLTKKKLMEAKKAL 460
             TI KL   LD EANQ+ VRKL+D+M +EGYVEA  +RRLGKRVIHS+LT+KKL E +K L
Sbjct:   408 TITKLHNMLDGEANQTAVRKLMDRMTQEGYVEASSNRRLGKRVIHSSLTEKKLNEVRKVL 467

Query:   461 DIDFMEIETNEPLNKSDHQEFRKIGSKHMDTSTCGLLHSVGSDVTRTKGRSD-IHQSGSF 519
               D M+++  E +NK++  +  K+ +   D STCG +HS+GSD TRTKGRS  + Q+GS 
Sbjct:   468 ATDDMDVDVTETINKTNGPD-AKVTA---DVSTCGGIHSIGSDFTRTKGRSGGMQQNGSV 523

Query:   520 RSEQAISKAKVGNTPTS-RAGPVASRESFAPGNEKIRTNGSTNNCDEVDDIMCSRSTQDK 578
              SEQ ISKA  GNTP S +A P ASRESFA     ++         E + + CS+++QD+
Sbjct:   524 LSEQTISKA--GNTPISNKAQPAASRESFAVHGGAVK---------EAETVNCSQASQDR 572

Query:   579 RLRKTSTVKEPILQQVKRQKSLA 601
             R RKTS V+EPILQ  KRQKS A
Sbjct:   573 RGRKTSMVREPILQYSKRQKSQA 595
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0007129 "synapsis" evidence=RCA;IDA;IMP
GO:0000794 "condensed nuclear chromosome" evidence=IDA
GO:0051026 "chiasma assembly" evidence=IMP
GO:0000785 "chromatin" evidence=IDA
GO:0005654 "nucleoplasm" evidence=IDA
GO:0005694 "chromosome" evidence=IDA
GO:0006302 "double-strand break repair" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0007126 "meiosis" evidence=RCA
GO:0007131 "reciprocal meiotic recombination" evidence=RCA
GO:0010212 "response to ionizing radiation" evidence=RCA
GO:0010332 "response to gamma radiation" evidence=RCA
GO:0032204 "regulation of telomere maintenance" evidence=RCA
GO:0032504 "multicellular organism reproduction" evidence=RCA
GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA
GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA
GO:0045132 "meiotic chromosome segregation" evidence=RCA
UNIPROTKB|Q76CY8 OsASY1 "Essential protein for meiotic synapsis" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2116510 ASY2 "AT4G32200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|H9L0N5 HORMAD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5M7C8 hormad1 "HORMA domain-containing protein 1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
RGD|1564960 Hormad1 "HORMA domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-49 hormad1 "HORMA domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1915231 Hormad1 "HORMA domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C2C4 HORMAD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q86X24 HORMAD1 "HORMA domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query604
pfam02301186 pfam02301, HORMA, HORMA domain 3e-37
>gnl|CDD|216966 pfam02301, HORMA, HORMA domain Back     alignment and domain information 
 Score =  136 bits (344), Expect = 3e-37
 Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 37/212 (17%)

Query: 12  TEQDSLLLTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEM------KIKKLMPMDAES 65
           T + SL L +  L +AI +I Y+RG++PE  F D+    L +      ++   +    E 
Sbjct: 1   TLKQSLELVKEFLEVAINSILYLRGIYPEESFEDRKKYNLPVLVSEDPQLIDYL----EK 56

Query: 66  RVYDALQKKYLKTLLFCVCE---AVEGPMIEEYAFSFSYSDSDSQEISMNINRTGNKKKG 122
            V+DAL+K YLK L+  + +     +  ++E Y F FSY  S                  
Sbjct: 57  GVFDALEKGYLKKLVLVIYDDKDPEKNEVLERYQFDFSYFPSGGNSSD------------ 104

Query: 123 GTFKCNTTTEITTTQMRSSACKMVRTLVQLMRTLDRMPEERTILMKLFYYDDVTPVDYEP 182
                   +E T  + R     ++R L+ L++ L  +PEERT+  KL YY   TP DYEP
Sbjct: 105 --------SEKTEDETRQEIRALIRQLIALVQFLPPLPEERTLTFKLLYY---TPPDYEP 153

Query: 183 PFFR-CCSEEEAHNPWTKNPLKMEVGNVNSKH 213
           P F+   S+ +        P ++ +G+ ++ H
Sbjct: 154 PGFKWADSDSDVKLIENSEPEEVSLGSFSTGH 185

The HORMA (for Hop1p, Rev7p and MAD2) domain has been suggested to recognise chromatin states that result from DNA adducts, double stranded breaks or non-attachment to the spindle and acts as an adaptor that recruits other proteins. MAD2 is a spindle checkpoint protein which prevents progression of the cell cycle upon detection of a defect in mitotic spindle integrity. Length = 186

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 604
KOG4652324 consensus HORMA domain [Chromatin structure and dy 100.0
PF02301208 HORMA: HORMA domain; InterPro: IPR003511 The HORMA 100.0
KOG3285203 consensus Spindle assembly checkpoint protein [Cel 99.96
KOG3186202 consensus Mitotic spindle checkpoint protein [Cell 98.67
PF0939765 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 96.71
smart0084363 Ftsk_gamma This domain directs oriented DNA transl 95.4
PF0132560 Fe_dep_repress: Iron dependent repressor, N-termin 92.82
smart00347101 HTH_MARR helix_turn_helix multiple antibiotic resi 92.53
PF0104759 MarR: MarR family; InterPro: IPR000835 The MarR-ty 92.47
COG1846126 MarR Transcriptional regulators [Transcription] 90.89
PRK03902142 manganese transport transcriptional regulator; Pro 88.63
PF1346368 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL 87.69
PRK11512144 DNA-binding transcriptional repressor MarR; Provis 87.49
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 86.47
TIGR01889109 Staph_reg_Sar staphylococcal accessory regulator f 86.41
smart0041866 HTH_ARSR helix_turn_helix, Arsenical Resistance Op 85.68
PRK03573144 transcriptional regulator SlyA; Provisional 85.49
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 85.33
TIGR02702203 SufR_cyano iron-sulfur cluster biosynthesis transc 84.13
TIGR02337118 HpaR homoprotocatechuate degradation operon regula 83.76
PRK11014141 transcriptional repressor NsrR; Provisional 83.52
smart0034560 HTH_GNTR helix_turn_helix gluconate operon transcr 82.91
PRK13777185 transcriptional regulator Hpr; Provisional 82.06
smart0041948 HTH_CRP helix_turn_helix, cAMP Regulatory protein. 81.45
PF0197868 TrmB: Sugar-specific transcriptional regulator Trm 81.31
PRK11050152 manganese transport regulator MntR; Provisional 81.23
>KOG4652 consensus HORMA domain [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=5.8e-40  Score=335.37  Aligned_cols=222  Identities=30%  Similarity=0.468  Sum_probs=180.7

Q ss_pred             hccHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccchhhhHhhcCCC---------ChhHHHHHHHHhcccceEE
Q 042785           10 EITEQDSLLLTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEMKIKKLMPM---------DAESRVYDALQKKYLKTLL   80 (604)
Q Consensus        10 ~ITeqQSl~lVk~LL~vAISsIlYLRGLFPEe~F~dr~v~gLsLKIKkLlp~---------d~EsgVfDALeKgYLK~Lv   80 (604)
                      --+++||+.||+++|++||++|+|.|||||++||++++++++.+..+.+++.         +.+.|++|||.+||||++.
T Consensus         6 ~~~e~~Sl~f~~rll~~ais~Ilr~Rgi~pe~yf~~~~v~~~~l~~~~~~~~~a~~~~li~~l~kg~~dai~~k~Lk~ls   85 (324)
T KOG4652|consen    6 LENEKQSLEFMTRLLYVAISTILRERGIFPEEYFKDRYVDGNLLVMTLLRRQDAPEGRLVSWLEKGVHDAIRQKLLKKLS   85 (324)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhcccchHHhcccccccchhhhhhhhccCCccccchHHHHHHHHHHHHHHHHHhheE
Confidence            3468999999999999999999999999999999999999944322333332         2457899999999999999


Q ss_pred             EEEEecCCCceeEEEEEEEEeecCCCCceeEEEeecCCcccCcccccccccccCHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 042785           81 FCVCEAVEGPMIEEYAFSFSYSDSDSQEISMNINRTGNKKKGGTFKCNTTTEITTTQMRSSACKMVRTLVQLMRTLDRMP  160 (604)
Q Consensus        81 LvIy~~~ddpVIEsYtFsFsYs~~gg~eVsm~l~stGnkk~~~t~~~~~~s~~Tl~qIRkqI~~LIRqLi~Ltq~L~pLP  160 (604)
                      |+|++.++.+.||+|.|+|.|.++|+..+.|+.+-+|++...  ++   ........+|++.+.|||+++.+++.|+|||
T Consensus        86 lvi~~~~d~~~IE~yifsF~Y~e~g~v~~~in~~~n~~s~~~--~e---~s~l~~ddtrr~~~~lir~~~i~~q~LePLP  160 (324)
T KOG4652|consen   86 LVITESEDPEDIEVYIFSFVYDEEGSVSARINYGINGQSSKA--FE---LSQLSMDDTRRQFAKLIRKLHICTQLLEPLP  160 (324)
T ss_pred             EEEecCCCCcceeEEEEEEEecCCCceeEEEecCCCCCcCch--hh---hhhhhhHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            999999977788999999999999875555554433332211  11   1234566699999999999999999999999


Q ss_pred             cceeEEEEEEEecCCCCCCCCCCCcccCCccCCCCCCCCCCceeEeeeecCCCeeEEEEEEEecCCccccCCcccCCccc
Q 042785          161 EERTILMKLFYYDDVTPVDYEPPFFRCCSEEEAHNPWTKNPLKMEVGNVNSKHFVLALKVKSVLDPCEDENDDMQDDEVS  240 (604)
Q Consensus       161 deR~lsmKLlYyDDvTP~DYEPPGFk~asd~e~~y~~~knp~kv~LGs~sTghH~V~LkV~Svldp~eden~~~~~~~~s  240 (604)
                      .+..++|+|.| +|.+|+||+||||++++  ..+|.|+.||+.++||.|+|+||++.++|+|      |+++.+++.+. 
T Consensus       161 ~~~~~~~rl~Y-~e~~ppDyqP~gFkd~~--~~~y~~p~~p~~~~IG~v~~~hH~~~~kv~s------d~~d~~~~~~~-  230 (324)
T KOG4652|consen  161 QGLILSMRLYY-TERVPPDYQPEGFKDST--RAFYTLPVNPEQINIGAVSTPHHKGFVKVLS------DATDSMEKAER-  230 (324)
T ss_pred             chhhhhheeee-cccCCccCCCcccccCc--cceeecCCCccceeeccccCccceeEEEEec------ccchhhhhhcc-
Confidence            97777776655 56799999999999986  4789999999999999999999999999999      77777777764 


Q ss_pred             cCCCcccc
Q 042785          241 LGADSVQR  248 (604)
Q Consensus       241 ~~~~~~~~  248 (604)
                        ++..+|
T Consensus       231 --~d~~~~  236 (324)
T KOG4652|consen  231 --TDKISD  236 (324)
T ss_pred             --cccccc
Confidence              555553

>PF02301 HORMA: HORMA domain; InterPro: IPR003511 The HORMA (for Hop1p, Rev7p and MAD2) domain has been suggested to recognise chromatin states that result from DNA adducts, double stranded breaks or non-attachment to the spindle and acts as an adaptor that recruits other proteins Back     alignment and domain information
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG3186 consensus Mitotic spindle checkpoint protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure [] Back     alignment and domain information
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure Back     alignment and domain information
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family Back     alignment and domain information
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein Back     alignment and domain information
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance Back     alignment and domain information
>COG1846 MarR Transcriptional regulators [Transcription] Back     alignment and domain information
>PRK03902 manganese transport transcriptional regulator; Provisional Back     alignment and domain information
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A Back     alignment and domain information
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family Back     alignment and domain information
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor Back     alignment and domain information
>PRK03573 transcriptional regulator SlyA; Provisional Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR Back     alignment and domain information
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR Back     alignment and domain information
>PRK11014 transcriptional repressor NsrR; Provisional Back     alignment and domain information
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor Back     alignment and domain information
>PRK13777 transcriptional regulator Hpr; Provisional Back     alignment and domain information
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein Back     alignment and domain information
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis Back     alignment and domain information
>PRK11050 manganese transport regulator MntR; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query604
4aez_B203 MAD2, mitotic spindle checkpoint component MAD2; c 3e-16
2vfx_A206 Mitotic spindle assembly checkpoint protein MAD2A; 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
3abd_A227 Mitotic spindle assembly checkpoint protein MAD2B; 3e-05
>4aez_B MAD2, mitotic spindle checkpoint component MAD2; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 203 Back     alignment and structure
 Score = 76.7 bits (188), Expect = 3e-16
 Identities = 26/199 (13%), Positives = 68/199 (34%), Gaps = 24/199 (12%)

Query: 3   AQKLKEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEMKI---KKLM 59
           +        + + S  L       A+ +I + RG++P   F       L M +   +++ 
Sbjct: 2   SSVPIRTNFSAKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVK 61

Query: 60  P--MDAESRVYDALQKKYLKTLLFCVCEAVEGPMIEEYAFSFSYSDSDSQEISMNINRTG 117
                  S+++  +  K ++ L+  +     G  +E + F+    D+  Q  ++      
Sbjct: 62  TYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNI------ 115

Query: 118 NKKKGGTFKCNTTTEITTTQMRSSACKMVRTLVQLMRTLDRMPEERTILMKLFYYDD-VT 176
                         +    +++     ++  +   +  L ++ E+ T  + ++   D   
Sbjct: 116 ------------GNKEDELRVQKEIQALIAQITATVTFLPQLEEQCTFNVLVYADKDSEV 163

Query: 177 PVDYEPPFFRCCSEEEAHN 195
           P D+     R   + E   
Sbjct: 164 PTDWVDSDPRILRDAEQVQ 182
>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus, mitosis, anaphase, cell cycle, CE division, spindle checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB: 2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A Length = 206 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3abd_A Mitotic spindle assembly checkpoint protein MAD2B; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_C* Length = 227 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query604
2vfx_A206 Mitotic spindle assembly checkpoint protein MAD2A; 99.97
4aez_B203 MAD2, mitotic spindle checkpoint component MAD2; c 99.96
3abd_A227 Mitotic spindle assembly checkpoint protein MAD2B; 99.89
2g9w_A138 Conserved hypothetical protein; DNA-binding domain 95.16
1sd4_A126 Penicillinase repressor; BLAI, MECI, methicillin, 94.76
2ve8_A73 FTSK, DNA translocase FTSK; nucleotide-binding, ch 94.51
1okr_A123 MECI, methicillin resistance regulatory protein ME 94.01
1p6r_A82 Penicillinase repressor; transcription regulation, 92.82
3hrs_A214 Metalloregulator SCAR; DTXR/MNTR family member, tr 92.69
1jgs_A138 Multiple antibiotic resistance protein MARR; trans 92.23
2gxg_A146 146AA long hypothetical transcriptional regulator; 92.21
2d1h_A109 ST1889, 109AA long hypothetical transcriptional re 91.9
3oop_A143 LIN2960 protein; protein structure initiative, PSI 91.77
4hbl_A149 Transcriptional regulator, MARR family; HTH, trans 91.56
1ub9_A100 Hypothetical protein PH1061; helix-turn-helix moti 91.49
2fbh_A146 Transcriptional regulator PA3341; MARR, transcript 91.49
2fa5_A162 Transcriptional regulator MARR/EMRR family; multip 91.21
2pg4_A95 Uncharacterized protein; structural genomics, join 91.09
2frh_A127 SARA, staphylococcal accessory regulator A; winged 91.08
3bpv_A138 Transcriptional regulator; MARR, DNA binding, tran 91.05
2fbi_A142 Probable transcriptional regulator; MARR, APC5816, 90.71
2bv6_A142 MGRA, HTH-type transcriptional regulator MGRA; mul 90.59
3bro_A141 Transcriptional regulator; helix_TURN_helix, multi 90.55
1lj9_A144 Transcriptional regulator SLYA; HTH DNA binding pr 90.53
3bj6_A152 Transcriptional regulator, MARR family; helix-turn 90.44
1q1h_A110 TFE, transcription factor E, TFE; TFIIE, transcrip 90.42
3eco_A139 MEPR; mutlidrug efflux pump regulator winged helix 90.14
3s2w_A159 Transcriptional regulator, MARR family; structural 90.08
3cjn_A162 Transcriptional regulator, MARR family; silicibact 90.06
3f3x_A144 Transcriptional regulator, MARR family, putative; 90.05
1fx7_A230 Iron-dependent repressor IDER; DTXR, iron-dependen 89.95
2a61_A145 Transcriptional regulator TM0710; APC4350, MCSG, m 89.93
1on2_A142 Transcriptional regulator MNTR; helix-turn-helix, 89.92
3ech_A142 MEXR, multidrug resistance operon repressor; winge 89.9
3g3z_A145 NMB1585, transcriptional regulator, MARR family; t 89.78
2rdp_A150 Putative transcriptional regulator MARR; PFAM PF01 89.73
2nyx_A168 Probable transcriptional regulatory protein, RV14; 89.49
1s3j_A155 YUSO protein; structural genomics, MARR transcript 89.29
1tbx_A99 ORF F-93, hypothetical 11.0 kDa protein; sulfolobu 89.22
2qww_A154 Transcriptional regulator, MARR family; YP_013417. 89.22
3e6m_A161 MARR family transcriptional regulator; APC88769, s 89.13
3jth_A98 Transcription activator HLYU; transcription factor 89.08
3fm5_A150 Transcriptional regulator; MCSG, PF04017, PSI, MAR 89.05
2qvo_A95 Uncharacterized protein AF_1382; PSI, structural g 89.0
2k4b_A99 Transcriptional regulator; DNA binding protein, wi 88.89
2x4h_A139 Hypothetical protein SSO2273; transcription; 2.30A 88.88
3k0l_A162 Repressor protein; helix-turn-helix, structural ge 88.62
2hr3_A147 Probable transcriptional regulator; MCSG, structur 88.61
3nqo_A189 MARR-family transcriptional regulator; structural 88.56
3bja_A139 Transcriptional regulator, MARR family, putative; 88.55
3tgn_A146 ADC operon repressor ADCR; helix-turn-helix, trans 88.36
2h09_A155 Transcriptional regulator MNTR; transcription regu 88.26
3hsr_A140 HTH-type transcriptional regulator SARZ; helix-tur 88.22
1z91_A147 Organic hydroperoxide resistance transcriptional; 88.13
3deu_A166 Transcriptional regulator SLYA; MARR, WING-helix, 88.1
3cdh_A155 Transcriptional regulator, MARR family; helix-turn 87.79
2eth_A154 Transcriptional regulator, putative, MAR family; M 87.78
2nnn_A140 Probable transcriptional regulator; structural gen 87.72
3boq_A160 Transcriptional regulator, MARR family; MARR famil 87.59
2fbk_A181 Transcriptional regulator, MARR family; winged-hel 87.17
3u2r_A168 Regulatory protein MARR; structural genomics, PSI- 86.99
2pex_A153 Transcriptional regulator OHRR; transcription regu 86.93
3bdd_A142 Regulatory protein MARR; putative multiple antibio 86.74
2dk5_A91 DNA-directed RNA polymerase III 39 kDa polypeptide 86.73
2qq9_A226 Diphtheria toxin repressor; regulator, DTXR, helix 86.43
2obp_A96 Putative DNA-binding protein; structural genomics, 85.86
2fxa_A207 Protease production regulatory protein HPR; protea 85.69
1sfx_A109 Conserved hypothetical protein AF2008; structural 85.67
3cuo_A99 Uncharacterized HTH-type transcriptional regulato; 85.4
1u2w_A122 CADC repressor, cadmium efflux system accessory pr 85.24
3kp7_A151 Transcriptional regulator TCAR; multiple drug resi 84.89
2b0l_A102 GTP-sensing transcriptional pleiotropic repressor; 84.86
3jw4_A148 Transcriptional regulator, MARR/EMRR family; DNA-b 84.61
3pqk_A102 Biofilm growth-associated repressor; helix-turn-he 84.52
4fx0_A148 Probable transcriptional repressor protein; helix- 84.44
4b8x_A147 SCO5413, possible MARR-transcriptional regulator; 84.34
3nrv_A148 Putative transcriptional regulator (MARR/EMRR FAM; 84.07
2p8t_A200 Hypothetical protein PH0730; pyrococcus horikoshii 83.5
2lkp_A119 Transcriptional regulator, ARSR family; symmetric 83.48
1qbj_A81 Protein (double-stranded RNA specific adenosine D 83.33
2kko_A108 Possible transcriptional regulatory protein (possi 82.93
3f6o_A118 Probable transcriptional regulator, ARSR family pr 82.9
2jsc_A118 Transcriptional regulator RV1994C/MT2050; cadmium, 82.69
1hsj_A487 Fusion protein consisting of staphylococcus access 82.5
2oqg_A114 Possible transcriptional regulator, ARSR family P; 82.23
1r1t_A122 Transcriptional repressor SMTB; zinc, transcriptio 81.48
3f6v_A151 Possible transcriptional regulator, ARSR family pr 81.33
2vn2_A128 DNAD, chromosome replication initiation protein; D 80.13
>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus, mitosis, anaphase, cell cycle, CE division, spindle checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB: 2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A Back     alignment and structure
Probab=99.97  E-value=2.8e-31  Score=258.99  Aligned_cols=189  Identities=15%  Similarity=0.263  Sum_probs=157.1

Q ss_pred             hhhhccHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccchhhh------HhhcCCCChhHHHHHHHHhcccceEE
Q 042785            7 KEAEITEQDSLLLTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEMK------IKKLMPMDAESRVYDALQKKYLKTLL   80 (604)
Q Consensus         7 ~~~~ITeqQSl~lVk~LL~vAISsIlYLRGLFPEe~F~dr~v~gLsLK------IKkLlp~d~EsgVfDALeKgYLK~Lv   80 (604)
                      +.+.||+++|+.+|.+||.+||++|||+|||||++.|..++.+|+.+.      ++.++. +...++.+||.+|+|++|+
T Consensus         8 ~~~~itlk~s~~iv~efl~~ain~ILY~RgiYP~e~F~~~k~y~l~v~~sr~p~l~~YI~-~~l~~l~~~L~~g~v~klv   86 (206)
T 2vfx_A            8 REQGITARGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLN-NVVEQLKDWLYKSSVQKLV   86 (206)
T ss_dssp             CCCSBCHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEETTEEEEEECCHHHHHHHH-HHHHHHHHHHHTTCEEEEE
T ss_pred             ccceeeHHHHHHHHHHHHHHHHHHHHHhccCCChHHhHHHHHcCceeeEecCHHHHHHHH-HHHHHHHHHHHhCceeEEE
Confidence            456899999999999999999999999999999999999999998762      222221 1236899999999999999


Q ss_pred             EEEEecCCCceeEEEEEEEEeecCCCCceeEEEeecCCcccCcccccccccccCHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 042785           81 FCVCEAVEGPMIEEYAFSFSYSDSDSQEISMNINRTGNKKKGGTFKCNTTTEITTTQMRSSACKMVRTLVQLMRTLDRMP  160 (604)
Q Consensus        81 LvIy~~~ddpVIEsYtFsFsYs~~gg~eVsm~l~stGnkk~~~t~~~~~~s~~Tl~qIRkqI~~LIRqLi~Ltq~L~pLP  160 (604)
                      |+|++.++++++|+|+|+|+|...+..          +   +      ....++..+++++++++||+|++++++||+||
T Consensus        87 lvI~~~~~~~~lEr~~Fd~~~~~~~~~----------~---~------~~~~~~~~ei~~eira~l~qi~~s~~~Lp~L~  147 (206)
T 2vfx_A           87 VVISNIESGEVLERWQFDIESDKTAKD----------D---S------APREKSQKAIQDEIRSVIRQITATVTFLPLLE  147 (206)
T ss_dssp             EEEEETTTCCEEEEEEEEEEECTTC----------------C------CCBSCCHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred             EEEEeCCCCceEEEEEEEeeccCCccc----------c---c------cCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            999999988899999999999864320          0   0      01346788999999999999999999999999


Q ss_pred             cceeEEEEEEEecCCCCCCCCCCCcccCCccCCCCCCCCCCceeEeeeecCCCeeEEEEEEEec
Q 042785          161 EERTILMKLFYYDDVTPVDYEPPFFRCCSEEEAHNPWTKNPLKMEVGNVNSKHFVLALKVKSVL  224 (604)
Q Consensus       161 deR~lsmKLlYyDDvTP~DYEPPGFk~asd~e~~y~~~knp~kv~LGs~sTghH~V~LkV~Svl  224 (604)
                      +++.+.|.+ |+++   ..+.|++|.+++   +.  +..|++.+.+|+|+|++|+|.+.|.--.
T Consensus       148 ~~ctF~i~v-~t~~---~~~~P~~W~~sd---~~--~i~~~~~v~lrs~sT~~h~v~~~V~y~~  202 (206)
T 2vfx_A          148 VSCSFDLLI-YTDK---DLVVPEKWEESG---PQ--FITNSEEVRLRSFTTTIHKVNSMVAYKI  202 (206)
T ss_dssp             SCEEEEEEE-EECT---TSCCCTTCCCCC---CC--CCCSEEEEECCCEECSSEEEEEEEEEEC
T ss_pred             CCcEEEEEE-EEcC---CCCCCCCcccCc---cc--ccCCCcEEeeeEEecCCeEEEEEEEEec
Confidence            999999965 5544   347888998774   43  4568999999999999999999998755
>4aez_B MAD2, mitotic spindle checkpoint component MAD2; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3abd_A Mitotic spindle assembly checkpoint protein MAD2B; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_C* Back     alignment and structure
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39 Back     alignment and structure
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A Back     alignment and structure
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A* Back     alignment and structure
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A Back     alignment and structure
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B Back     alignment and structure
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A Back     alignment and structure
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 Back     alignment and structure
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A Back     alignment and structure
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 Back     alignment and structure
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} Back     alignment and structure
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} Back     alignment and structure
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 Back     alignment and structure
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} Back     alignment and structure
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48 Back     alignment and structure
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D Back     alignment and structure
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Back     alignment and structure
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 Back     alignment and structure
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 Back     alignment and structure
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 Back     alignment and structure
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41 Back     alignment and structure
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 Back     alignment and structure
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} Back     alignment and structure
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A Back     alignment and structure
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 Back     alignment and structure
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A* Back     alignment and structure
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A Back     alignment and structure
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Back     alignment and structure
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} Back     alignment and structure
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 Back     alignment and structure
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 Back     alignment and structure
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} Back     alignment and structure
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} Back     alignment and structure
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} Back     alignment and structure
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii} Back     alignment and structure
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A Back     alignment and structure
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} Back     alignment and structure
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} Back     alignment and structure
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} Back     alignment and structure
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} Back     alignment and structure
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} Back     alignment and structure
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} Back     alignment and structure
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A Back     alignment and structure
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* Back     alignment and structure
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Back     alignment and structure
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 Back     alignment and structure
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28 Back     alignment and structure
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus} Back     alignment and structure
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A Back     alignment and structure
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} Back     alignment and structure
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 Back     alignment and structure
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... Back     alignment and structure
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71 Back     alignment and structure
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 Back     alignment and structure
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 Back     alignment and structure
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} Back     alignment and structure
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A Back     alignment and structure
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A Back     alignment and structure
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66 Back     alignment and structure
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 Back     alignment and structure
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A Back     alignment and structure
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A* Back     alignment and structure
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor} Back     alignment and structure
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} Back     alignment and structure
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2 Back     alignment and structure
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis} Back     alignment and structure
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A Back     alignment and structure
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A Back     alignment and structure
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} Back     alignment and structure
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1 Back     alignment and structure
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} Back     alignment and structure
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A Back     alignment and structure
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} Back     alignment and structure
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 604
d1go4a_196 d.135.1.1 (A:) The spindle assembly checkpoint pro 2e-29
>d1go4a_ d.135.1.1 (A:) The spindle assembly checkpoint protein mad2 {Human (Homo sapiens) [TaxId: 9606]} Length = 196 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: The spindle assembly checkpoint protein mad2
superfamily: The spindle assembly checkpoint protein mad2
family: The spindle assembly checkpoint protein mad2
domain: The spindle assembly checkpoint protein mad2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (283), Expect = 2e-29
 Identities = 29/215 (13%), Positives = 67/215 (31%), Gaps = 33/215 (15%)

Query: 11  ITEQDSLLLTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEMKIKKLMPMD-----AES 65
           IT + S  +        I +I Y RG++P   F       L + +   + +         
Sbjct: 4   ITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVE 63

Query: 66  RVYDALQKKYLKTLLFCVCEAVEGPMIEEYAFSFSYSDSDSQEISMNINRTGNKKKGGTF 125
           ++ D L K  ++ L+  +     G ++E + F      +   +                 
Sbjct: 64  QLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDD----------------- 106

Query: 126 KCNTTTEITTTQMRSSACKMVRTLVQLMRTLDRMPEERTILMKLFYYDDVTPVDYEPPFF 185
             +   E +   ++     ++  +   +  L  +    +    L  Y   T  D   P  
Sbjct: 107 --SAPREKSQKAIQDEIRSVIAQITATVTFLPLLEVSCS--FDLLIY---TDKDLVVPEK 159

Query: 186 RCCSEEEAHNPWTKNPLKMEVGNVNSKHFVLALKV 220
                EE+   +  N  ++ + +  +    +   V
Sbjct: 160 W----EESGPQFITNSEEVRLRSFTTTIHKVNSMV 190

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query604
d1go4a_196 The spindle assembly checkpoint protein mad2 {Huma 100.0
d2j5pa169 DNA translocase FtsK {Escherichia coli [TaxId: 562 95.17
d2ve8a167 DNA translocase FtsK {Pseudomonas aeruginosa [TaxI 94.67
d3ctaa185 Ta1064 (RFK), N-terminal domain {Thermoplasma acid 94.51
d2isya163 Iron-dependent regulator IdeR {Mycobacterium tuber 93.14
d2ev0a161 Manganese transport regulator MntR {Bacillus subti 92.59
d2frha1115 Pleiotropic regulator of virulence genes, SarA {St 91.86
d2d1ha1109 Hypothetical transcriptional regulator ST1889 {Sul 91.34
d1ub9a_100 Hypothetical protein PH1061 {Archaeon Pyrococcus h 90.69
d1hsja1115 Staphylococcal accessory regulator A homolog, SarR 89.89
d1s3ja_143 Putative transcriptional regulator YusO {Bacillus 89.84
d1p4xa1125 Staphylococcal accessory regulator A homolog, SarS 89.0
d2fbka1172 Transcriptional regulator DR1159 {Deinococcus radi 87.36
d1jgsa_138 Multiple antibiotic resistance repressor, MarR {Es 87.05
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 86.38
d2bv6a1136 Transcriptional regulator MgrA {Staphylococcus aur 85.31
d2etha1140 Putative transcriptional regulator TM0816 {Thermot 85.17
d1z91a1137 Organic hydroperoxide resistance transcriptional r 84.89
d2fxaa1162 Protease production regulatory protein Hpr {Bacill 83.72
d3broa1135 Transcriptional regulator OEOE1854 {Oenococcus oen 83.71
d1lnwa_141 MexR repressor {Pseudomonas aeruginosa [TaxId: 287 83.32
d2fbha1137 Transcriptional regulator PA3341 {Pseudomonas aeru 83.06
d1lj9a_144 Transcriptional regulator SlyA {Enterococcus faeca 83.03
d2hr3a1145 Probable transcriptional regulator PA3067 {Pseudom 82.64
d2a61a1139 Transcriptional regulator TM0710 {Thermotoga marit 80.86
>d1go4a_ d.135.1.1 (A:) The spindle assembly checkpoint protein mad2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: The spindle assembly checkpoint protein mad2
superfamily: The spindle assembly checkpoint protein mad2
family: The spindle assembly checkpoint protein mad2
domain: The spindle assembly checkpoint protein mad2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-37  Score=296.23  Aligned_cols=186  Identities=16%  Similarity=0.230  Sum_probs=155.0

Q ss_pred             hhccHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccchhhhH------hhcCCCChhHHHHHHHHhcccceEEEE
Q 042785            9 AEITEQDSLLLTRNLLRIAIFNISYIRGLFPENYFNDKSVPALEMKI------KKLMPMDAESRVYDALQKKYLKTLLFC   82 (604)
Q Consensus         9 ~~ITeqQSl~lVk~LL~vAISsIlYLRGLFPEe~F~dr~v~gLsLKI------KkLlp~d~EsgVfDALeKgYLK~LvLv   82 (604)
                      +.||++||+.+|++||.+||++|||+|||||+++|.+++++|+.+.+      ..++. +.+.+|++||++|||++|+|+
T Consensus         2 ~~it~k~S~~~v~e~l~~ai~~ILY~RgiyP~~~F~~~~~~~l~v~~~~~~~l~~yi~-~~~~~v~~~L~~~~l~~l~lv   80 (196)
T d1go4a_           2 QGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLN-NVVEQLKDWLYKCSVQKLVVV   80 (196)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEETTEEEEEECCHHHHHHHH-HHHHHHHHHHHTTCEEEEEEE
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHccCCChHHchhheECCeeEEEecCHHHHHHHH-HHHHHHHHHHHhCccEEEEEE
Confidence            68999999999999999999999999999999999999999987621      11111 234789999999999999999


Q ss_pred             EEecCCCceeEEEEEEEEeecCCCCceeEEEeecCCcccCcccccccccccCHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 042785           83 VCEAVEGPMIEEYAFSFSYSDSDSQEISMNINRTGNKKKGGTFKCNTTTEITTTQMRSSACKMVRTLVQLMRTLDRMPEE  162 (604)
Q Consensus        83 Iy~~~ddpVIEsYtFsFsYs~~gg~eVsm~l~stGnkk~~~t~~~~~~s~~Tl~qIRkqI~~LIRqLi~Ltq~L~pLPde  162 (604)
                      |++.++++++|+|+|+|.|...+..            .       ......+.++++++++++||+|+.++++|++||++
T Consensus        81 I~~~~~~~vlEry~F~~~~~~~~~~------------~-------~~~~~~~~~~i~~~~~~~ir~L~~~~~~Lp~Lp~~  141 (196)
T d1go4a_          81 ISNIESGEVLERWQFDIECDKTAKD------------D-------SAPREKSQKAIQDEIRSVIAQITATVTFLPLLEVS  141 (196)
T ss_dssp             EEETTTCCEEEEEEEEEEECGGGGS------------C-------SSCBCCCHHHHHHHHHHHHHHHHHGGGTSCCCCSC
T ss_pred             EEeCCCCCeeEEEEEEEEecccCCc------------c-------cccccCCHHHHHHHHHHHHHHHHHHHccCCCCCCC
Confidence            9999989999999999999864321            0       11234578899999999999999999999999988


Q ss_pred             eeEEEEEEEecCCCCCCCCCCCcccCCccCCCCCCCCCCceeEeeeecCCCeeEEEEEEEe
Q 042785          163 RTILMKLFYYDDVTPVDYEPPFFRCCSEEEAHNPWTKNPLKMEVGNVNSKHFVLALKVKSV  223 (604)
Q Consensus       163 R~lsmKLlYyDDvTP~DYEPPGFk~asd~e~~y~~~knp~kv~LGs~sTghH~V~LkV~Sv  223 (604)
                      +  +|+|++|   ||+||+||+|...+  ++  .+..|++.+.+++|+|++|+|.+.|+--
T Consensus       142 ~--tf~i~~y---t~~d~~~P~~w~~~--~~--~~i~~~e~v~lrs~sT~~H~v~~~V~yk  193 (196)
T d1go4a_         142 C--SFDLLIY---TDKDLVVPEKWEES--GP--QFITNSEEVRLRSFTTTIHKVNSMVAYK  193 (196)
T ss_dssp             E--EEEEEEE---EESSCCCCTTEEEC--CC--CCCBSCEEEECCCEECSSEEEEEEEEEC
T ss_pred             e--EEEEEEE---cCCCCCCCCcccCC--CC--eecCCCcEEEEeEEecCCcEEeeEEEEe
Confidence            7  4566666   67999988875432  34  3557899999999999999999999753
>d2j5pa1 a.4.5.67 (A:1261-1329) DNA translocase FtsK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ve8a1 a.4.5.67 (A:745-811) DNA translocase FtsK {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} Back     information, alignment and structure
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure