Citrus Sinensis ID: 042804

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MLKSALVSQSTPITALFSFSKPFLHGNNHGFRQIESSSSHKKGPNERAGSAAAVNNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDESFLFGKSFSLELVSTKLDHKTGSEKTTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEITCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSELGSV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccEEccccccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEccccccccccccccccccEEEEEEEEEccccccccccccccEEEEEcccccccEEEEEEEEEEccccEEEEcccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHcccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccEEEEccccEEEEEEEEccccccccccHHHHccccEEEEEEEEcccccccccccccccHEEEEEcccccEEEEEEEEEcccccccEEEEEEEcEHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHcccccccccccccccEEcEccccccccccccccccEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mlksalvsqstpitalfsfskpflhgnnhgfrqiesssshkkgpneragsAAAVNNIKAIATSKRTLIDNVTAVITVKsnsslkdeidesflfgkSFSLELVSTkldhktgsekttkpshairvgndkegnylyeskfnvpfdfgeitcnswlqpkeentptriffanksylpsatpdgLKRLRRQELRHLqgdgrgvrqlsdriydydvyndlgnpekdpklkrpvlggkeypyprrcrtgrprselgsv
Flexible Loop (DISEMBL)
mlksalvsqstpiTALFSFSKPFLHGNNHGFRQIESSSSHKKGPNERAGSAAAVNNIKAIatskrtlidnVTAVITvksnsslkdeiDESFLFGKSFSLELVSTkldhktgsekttkpshairvgndkegnYLYESKFNVPFDFGEITCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELrhlqgdgrgvrqlsdriYDYDvyndlgnpekdpklkrpvlggkeypyprrcrtgrprselgsv
Low Complexity Region (SEG)
MLKSALVSQSTPITALFSFSKPFLHGNNHGFRQIESSSSHKKGPNERAGSAAAVNNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDESFLFGKSFSLELVSTKLDHKTGSEKTTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEITCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSELGSV
Disordered region (IsUnstruct)
*****************************************************VNNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDESFLFGKSFSLELV**************************EGNYLYESKFNVPFDFGEITCNSWLQPKEENTPTRIFFANKSYL************************GVRQLSDRIYDYDVYNDL*************************************
Disordered Region (DISOPRED)
******************************************************************LIDNVTAVITVKSNSSLKDEIDESFLFGKSFSLELV*****************HAIRVGNDKEGNYLYESKFNVPFDFGEITCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRC************
Disordered Region (DISEMBL)
**********TPITALFSFSKPFLHGNNHGFR*******************AAVNNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDESFLFGKSFSLELVSTKLD***********SHAIRVGNDKEGNYLYESKFNVPFDFGEITCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRT**********
Disordered Region (DISPRO)
*****LVSQ*TPITALFSFSKPFLHGNNHGFRQIESSSSHKKGPNERAGSAAAVNNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDESFLFGKSFSLELVSTKLDHKTGSEKTTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEITCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRC************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKSALVSQSTPITALFSFSKPFLHGNNHGFRQIESSSSHKKGPNERAGSAAAVNNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDESFLFGKSFSLELVSTKLDHKTGSEKTTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEITCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSELGSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
O24370	899	Linoleate 13S-lipoxygenas	N/A	no	0.693	0.193	0.474	4e-43
P38419	924	Lipoxygenase 7, chloropla	yes	no	0.689	0.187	0.462	6e-43
Q84YK8	941	Probable lipoxygenase 8,	no	no	0.617	0.164	0.461	6e-39
Q8H016	918	Probable lipoxygenase 6 O	no	no	0.864	0.236	0.357	1e-37
Q9LNR3	919	Lipoxygenase 3, chloropla	yes	no	0.681	0.186	0.413	2e-37
Q7XV13	899	Putative lipoxygenase 5 O	no	no	0.609	0.170	0.435	2e-36
O24371	914	Linoleate 13S-lipoxygenas	N/A	no	0.864	0.237	0.356	2e-35
Q9FNX8	926	Lipoxygenase 4, chloropla	no	no	0.681	0.184	0.395	6e-35
P93184	936	Lipoxygenase 2.1, chlorop	N/A	no	0.760	0.204	0.377	8e-34
Q8GSM2	896	Lipoxygenase 2.3, chlorop	N/A	no	0.760	0.213	0.398	5e-32

>sp|O24370|LOX21_SOLTU Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1

 Score =  174 bits (442), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 101/213 (47%), Positives = 127/213 (59%), Gaps = 39/213 (18%)

Query: 71  VTAVITVKSNSSLK-----DEIDESFLFGKSFSLELVSTKLDHKTGSEKTTKPSHAIRVG 125
           V AV+TV+   +L      D+I +  L GKS  L +V+ +LDHKTG EK    ++A R G
Sbjct: 72  VKAVVTVQKQVNLNLSRGLDDIGD--LLGKSLLLWIVAAELDHKTGIEKPGIRAYAHR-G 128

Query: 126 NDKEGNYLYESKFNVPFDFGE------------------------------ITCNSWLQP 155
            D +G+  YE+ F +P DFGE                              ITCNSW+  
Sbjct: 129 RDVDGDTHYEADFVIPQDFGEVGAILIENEHHKEMYVKNIVIDGFVHGKVEITCNSWVHS 188

Query: 156 KEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLG 215
           K +N   RIFF NKSYLPS TP G+ RLR +EL  L+GDG G R++ +RIYDYDVYNDLG
Sbjct: 189 KFDNPDKRIFFTNKSYLPSQTPSGVSRLREEELVTLRGDGIGERKVFERIYDYDVYNDLG 248

Query: 216 NPE-KDPKLKRPVLGGKEYPYPRRCRTGRPRSE 247
             +  +   KRPVLGGKE PYPRRC+TGRPRS+
Sbjct: 249 EADSNNDDAKRPVLGGKELPYPRRCKTGRPRSK 281

Plant lipoxygenase involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence. May not be involved in the bulk production of jasmonate upon wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure. Linolenic acid is the preferred substrate, before linoleic and arachidonic acids. Has also some activity with phosphatidylglycerol, but not with galactolipids.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: .EC: 1EC: 2

>sp|P38419|LOXC1_ORYSJ Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2

 Score =  174 bits (441), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 98/212 (46%), Positives = 122/212 (57%), Gaps = 39/212 (18%)

Query: 75  ITVKSNSSLKDEIDESFLFGKSFSLELVSTKLDHKTGSEKTTKPSHAIRVGNDKEGNYLY 134
           I V     +   ID   L G+S SLELVS++LD KTG EK T  S+A  V +D      Y
Sbjct: 92  IKVTVGELINRSIDIRDLIGRSLSLELVSSELDAKTGKEKATVRSYAHNVDDDDHSVVTY 151

Query: 135 ESKFNVPFDFGEI----------------------------------TCNSWLQPK---E 157
           E+ F+VP  FG I                                   CNSW+QPK   +
Sbjct: 152 EADFDVPSGFGPIGAIIVTNELRQEMFLEDINLTASDGAGNSTVLPIRCNSWVQPKSVGD 211

Query: 158 ENTPT-RIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGN 216
           E TP+ RIFFANK+YLP  TP GL+  R+ +L+  +GDG G R+  DR+YDYDVYNDLGN
Sbjct: 212 EGTPSKRIFFANKTYLPGQTPAGLRSYRKNDLQQKRGDGTGEREADDRVYDYDVYNDLGN 271

Query: 217 PEKDPKLKRPVLGG-KEYPYPRRCRTGRPRSE 247
           P+ +  L RPVLGG K++PYPRRCRTGRP S+
Sbjct: 272 PDSNGDLARPVLGGNKQFPYPRRCRTGRPPSK 303

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. This lipoxygenase introduces molecular oxygen exclusively into the C-13 position of linoleic and linolenic acids.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q84YK8|LOXC2_ORYSJ Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1

 Score =  160 bits (406), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 90/195 (46%), Positives = 116/195 (59%), Gaps = 40/195 (20%)

Query: 92  LFGKSFSLELVSTKLDHKTGSEKTTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEI---- 147
           L G+S  LELVS++L+ KTG +K T  S+A +V +D  G   YE+ F+VP  FG I    
Sbjct: 127 LIGRSLFLELVSSELEAKTGKKKATVHSYAHKVDDDDHGVVTYEADFDVPTGFGPIGAVV 186

Query: 148 ------------------------------TCNSWLQPK---EENTP-TRIFFANKSYLP 173
                                          CNSW+QPK   +E TP  RIFFA K+YLP
Sbjct: 187 VTNELGQEMFLEDLNLTAGDGAGNSTVLPIRCNSWVQPKSSIDEGTPGKRIFFA-KAYLP 245

Query: 174 SATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGG-KE 232
             TP GL+  R ++L+  +G+G G R+  DR+YDYDVYNDLGNP+ +  L RPVLGG K+
Sbjct: 246 GQTPAGLRSYREEDLKQKRGNGAGQREADDRVYDYDVYNDLGNPDSNGDLARPVLGGSKQ 305

Query: 233 YPYPRRCRTGRPRSE 247
           +PYPRRCRTGRP S+
Sbjct: 306 FPYPRRCRTGRPPSK 320

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. It catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q8H016|LOX6_ORYSJ Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/277 (35%), Positives = 141/277 (50%), Gaps = 60/277 (21%)

Query: 22  PFLHGNNHGFRQIESSSSHKKGPNERAGSAAAVNNIKAIATSKRTLIDNVT--AVITVKS 79
           P L G  HG R++  ++  ++ P   A  ++ +      A  +R   + V   A +TV+ 
Sbjct: 31  PLLPGERHGRRKVVVAAISEEVPRLAASPSSGIKG--GGAGERRPAPEKVALRAALTVRR 88

Query: 80  NSSLKDEIDESF---------LFGKSFSLELVSTKLDHKTGSEKTTKPSHAIRVG----- 125
               K++I E+          + G++  LEL+STK+       +T KP  + RV      
Sbjct: 89  KQ--KEDIKEAVAGHLDALWDMVGRNVVLELISTKI-----HPRTKKPMQSGRVSIKDWC 141

Query: 126 ---NDKEGNYLYESKFNVPFDFGE--------------------------------ITCN 150
                K  + +Y ++F V  DFGE                                  CN
Sbjct: 142 QKRGAKGDHVVYTAEFTVDADFGEPGAIAVANRHNREFFLESIVVEGGGLPCGPVHFACN 201

Query: 151 SWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDV 210
           SW+Q   E    R+FF+NK YLPS TP GL+ LR +EL+ L+GDG GVR+LSDRIYDY  
Sbjct: 202 SWVQSTRELPTKRVFFSNKPYLPSETPPGLRELREKELKDLRGDGTGVRKLSDRIYDYAT 261

Query: 211 YNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSE 247
           YNDLGNP+K  +  RP+LGG++ PYPRRCRTGRP ++
Sbjct: 262 YNDLGNPDKGKEFIRPILGGEKIPYPRRCRTGRPPTD 298

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9LNR3|LOX3_ARATH Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1

 Score =  155 bits (393), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/215 (41%), Positives = 123/215 (57%), Gaps = 44/215 (20%)

Query: 71  VTAVITVKSNSSLKDEIDESFL---------FGKSFSLELVSTKLDHKTGSEKTTKPS-- 119
           V AV+TV++ +  K+++ E+ +          G++  LEL+ST+LD KT   K +  +  
Sbjct: 86  VRAVVTVRNKN--KEDLKETLVKHLDAFADKIGRNIVLELISTQLDPKTKLPKKSNAAVL 143

Query: 120 -----------------------------HAIRVGNDKEGNYLYESKFNVPFDFGEI--T 148
                                         AI V N  +  +  ES     F  G +   
Sbjct: 144 KDWSKKSKTKAERVHYTAEFTVDAAFGSPGAITVMNKHQKEFFLESITIEGFALGPVHFP 203

Query: 149 CNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDY 208
           CNSW+Q ++++   RIFF N+ YLP+ TP GL+ LR +EL++L+GDG GVR+LSDRIYD+
Sbjct: 204 CNSWVQSQKDHPDKRIFFTNQPYLPNETPSGLRVLREKELKNLRGDGSGVRKLSDRIYDF 263

Query: 209 DVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGR 243
           DVYNDLGNP+K  +L RP LGGKE PYPRRCRTGR
Sbjct: 264 DVYNDLGNPDKSSELSRPKLGGKEVPYPRRCRTGR 298

13S-lipoxygenase that can use linolenic acid as substrates. Plant lipoxygenases may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q7XV13|LOX5_ORYSJ Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2

 Score =  152 bits (385), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/186 (43%), Positives = 108/186 (58%), Gaps = 33/186 (17%)

Query: 94  GKSFSLELVSTKLDHKTGSEKTTKPSHAIRVGNDKE---GNYLYESKFNVPFDFGE---- 146
           G+S  LELVST+ D + G+ K +KPS  +   + K+      +Y ++F V   FGE    
Sbjct: 98  GRSVLLELVSTETDPRKGTPKKSKPSALVGWFDKKDVKAERVVYTAEFAVDAGFGEPGAV 157

Query: 147 --------------------------ITCNSWLQPKEENTPTRIFFANKSYLPSATPDGL 180
                                      TCNSW+QP   +   R+FF+N+ YLPS TP GL
Sbjct: 158 TVLNRHQREFYIESIVVEGFPTGPAHFTCNSWVQPTRVSRDRRVFFSNRPYLPSETPPGL 217

Query: 181 KRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCR 240
           + LR +EL  L+GDG G R+++DR+YDYDVYNDLGNP+K     RPVLGG++ PYPRR R
Sbjct: 218 RELRLRELADLRGDGTGERRITDRVYDYDVYNDLGNPDKGVASARPVLGGEQMPYPRRMR 277

Query: 241 TGRPRS 246
           TGRP +
Sbjct: 278 TGRPST 283

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|O24371|LOX31_SOLTU Linoleate 13S-lipoxygenase 3-1, chloroplastic OS=Solanum tuberosum GN=LOX3.1 PE=1 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/264 (35%), Positives = 138/264 (52%), Gaps = 47/264 (17%)

Query: 25  HGNNHGF--RQIESSSSHKKGPNERAGSAAAVNNIKAIATSKRTLIDNVTAVITVKSNSS 82
           H  NH +  +Q +   +  +    R  + AA++        ++ +   V AV+TV++ + 
Sbjct: 34  HKENHLWFNQQFQGRRNLSRRKAFRQSTMAAISENLIKVVPEKAVRFKVRAVVTVRNKN- 92

Query: 83  LKDEIDESFL---------FGKSFSLELVSTKLDHKTGSEKTTKPS-------------- 119
            K+++ E+ +          G++ +LEL+ST +D  T   K +  +              
Sbjct: 93  -KEDLKETIVKHLDAFTDKIGRNVTLELISTDMDPNTKGPKKSNQAVLKDWSKKSNLKTE 151

Query: 120 -----------------HAIRVGNDKEGNYLYESKFNVPFDFGEI--TCNSWLQPKEENT 160
                             AI V N  +  +  ES     F  G +   CNSW+QPK+++ 
Sbjct: 152 RVNYTAEFIVDSNFGNPGAITVTNKHQQEFFLESITIEGFACGPVHFPCNSWVQPKKDHP 211

Query: 161 PTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKD 220
             RIFF+N+ YLP  TP GLK LR +ELR L+GDG+GVR+LSDRIYDYD+YNDLGNP+K 
Sbjct: 212 GKRIFFSNQPYLPDETPAGLKSLRERELRDLRGDGKGVRKLSDRIYDYDIYNDLGNPDKG 271

Query: 221 PKLKRPVLGGKE-YPYPRRCRTGR 243
               RP LGG +  PYPRRCR+GR
Sbjct: 272 IDFARPKLGGDDNVPYPRRCRSGR 295

Plant lipoxygenases may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. Required for the regulation of wound-induced gene expression, but is not involved in the bulk production of jasmonate upon wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure. Linolenic acid is the preferred substrate, before linoleic and arachidonic acids.

Solanum tuberosum (taxid: 4113)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9FNX8|LOX4_ARATH Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1

 Score =  147 bits (372), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 85/215 (39%), Positives = 120/215 (55%), Gaps = 44/215 (20%)

Query: 71  VTAVITVKSNSSLKDEIDESFL---------FGKSFSLELVSTKLDHKTGSEKTTKPS-- 119
           V AV TV++ +  K++  E+ +          G++  LEL+ST++D KT   K +K +  
Sbjct: 92  VRAVATVRNKN--KEDFKETLVKHLDAFTDKIGRNVVLELMSTQVDPKTNEPKKSKAAVL 149

Query: 120 -----------------------------HAIRVGNDKEGNYLYESKFNVPFDFGEI--T 148
                                         AI V N  +  +  ES     F  G +   
Sbjct: 150 KDWSKKSNSKAERVHYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFP 209

Query: 149 CNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDY 208
           CNSW+Q ++++   RI F N+ YLPS TP GL+ LR +EL +L+G+G+G R+LSDRIYDY
Sbjct: 210 CNSWVQSQKDHPSKRILFTNQPYLPSETPSGLRTLREKELENLRGNGKGERKLSDRIYDY 269

Query: 209 DVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGR 243
           DVYND+GNP+   +L RP LGG+E+PYPRRCRTGR
Sbjct: 270 DVYNDIGNPDISRELARPTLGGREFPYPRRCRTGR 304

Plant lipoxygenases may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure (By similarity). 13S-lipoxygenase that can use linolenic acid as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|P93184|LOX21_HORVU Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1

 Score =  144 bits (362), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 91/241 (37%), Positives = 124/241 (51%), Gaps = 50/241 (20%)

Query: 49  GSAAAVNNIKAIATSKRTLIDNVTAVITVKSNSS------LKDEIDESFLFGKSFSLELV 102
           G+A        +    RT    + A +TV  + +      L D I +++L      ++LV
Sbjct: 66  GAAVGTVTRPDVHVQDRTHATEMKATVTVHMSKAAGVRDFLYDLILKTWL-----HVDLV 120

Query: 103 STKLDHKTGSEK---TTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEI------------ 147
           S++LD +TG E+   +    H+ RV ++ +   +YE+ F VP  FG I            
Sbjct: 121 SSELDPQTGQEREPISGAVKHSGRVDDEWD---MYEATFKVPASFGPIGAVQVTNYHHSE 177

Query: 148 --------------------TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQE 187
                                C SW+ P       R+FF   SYLPS TP G++ LR++E
Sbjct: 178 MLLGDIEVFPTGQEESAVTFHCKSWIDPSHCTPDKRVFFPAHSYLPSQTPKGVEGLRKRE 237

Query: 188 LRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPK-LKRPVLGGKEYPYPRRCRTGRPRS 246
           L  L+G G G R+  DRIYDYDVYNDLGNP+ D     RPVLGGKE+PYPRRCRTGRPRS
Sbjct: 238 LEILRGTGCGERKEHDRIYDYDVYNDLGNPDDDNNPTTRPVLGGKEHPYPRRCRTGRPRS 297

Query: 247 E 247
           +
Sbjct: 298 K 298

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. This enzyme is possibly involved in jasmonic acid synthesis. It exhibits linoleate 13-lipoxygenase and arachidonate 15-lipoxygenase activity.

Hordeum vulgare (taxid: 4513)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q8GSM2|LOX23_HORVU Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1

 Score =  137 bits (346), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/236 (39%), Positives = 129/236 (54%), Gaps = 45/236 (19%)

Query: 48  AGSAAAVNNIKAIATSKRTLIDNVTAVITVKSNSSLK-----DEIDESFLFGKSFSLELV 102
           A +  AV    ++ T +R L   VTA++T +  +S+      D+I +  LFGK+  LELV
Sbjct: 51  ASTEEAVGVSTSVTTKERAL--TVTAIVTAQVPTSVYVARGLDDIQD--LFGKTLLLELV 106

Query: 103 STKLDHKTGSEKTTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEI--------------- 147
           S++LD KTG E+      A      KEG Y  E+K +VP  FG +               
Sbjct: 107 SSELDPKTGRERERVKGFAHM--TLKEGTY--EAKMSVPASFGPVGAVLVENEHHREMFI 162

Query: 148 -----------------TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRH 190
                               SW+  K ++   R FF  KSYLPS TP G++ LR++EL  
Sbjct: 163 KDIKLITGGDESTAITFDVASWVHSKFDDPEPRAFFTVKSYLPSQTPPGIEALRKKELET 222

Query: 191 LQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRS 246
           L+GDG   R+  +R+YDYD YNDLG+P+K+   KRPVLG KE+PYPRRCRTGRP++
Sbjct: 223 LRGDGHSERKFHERVYDYDTYNDLGDPDKNIDHKRPVLGTKEHPYPRRCRTGRPKT 278

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. This enzyme exhibits linoleate 13-lipoxygenase activity.

Hordeum vulgare (taxid: 4513)

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
18461098	895	lipoxygenase [Citrus jambhiri]	0.944	0.264	0.454	6e-56
224053392	897	predicted protein [Populus trichocarpa]	0.956	0.267	0.425	1e-50
224103783	565	predicted protein [Populus trichocarpa]	0.956	0.424	0.425	1e-49
71999169	898	lipoxygenase LOX1 [Populus deltoides]	0.952	0.266	0.424	1e-49
1853970	899	CPRD46 protein [Vigna unguiculata]	0.780	0.218	0.480	1e-46
308943877	901	lipoxygenase [Camellia sinensis]	0.948	0.264	0.422	3e-46
213876486	900	lipoxygenase [Camellia sinensis]	0.932	0.26	0.425	4e-46
224057525	898	predicted protein [Populus trichocarpa]	0.960	0.268	0.404	5e-46
229554825	901	lipoxygenase [Camellia sinensis]	0.928	0.258	0.415	2e-45
255544332	902	lipoxygenase, putative [Ricinus communis	0.892	0.248	0.432	3e-45

>gi|18461098|dbj|BAB84352.1| lipoxygenase [Citrus jambhiri]

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 129/284 (45%), Positives = 170/284 (59%), Gaps = 47/284 (16%)

Query: 1   MLKSALVSQSTPITALFSFSKPFLHGNNHGFRQIESSSSHKKGPNERAGSAAAVNNIKAI 60
           M    LV Q+  I  +   SKPFLHGN + FRQI+SS S KKGP  R GS  + N++KA+
Sbjct: 1   MFNPVLVHQTRSIRTILPLSKPFLHGNGNVFRQIQSSPSFKKGPKIRLGSVPS-NSVKAM 59

Query: 61  ATSKRTLIDNVTAVITVK-------SNSSLKDEIDESFLFGKSFSLELVSTKLDHKTGSE 113
           A +  +  + VTAV+TV+       +   + D++++  LF KS  LELVS K ++K    
Sbjct: 60  ADTAVS--NGVTAVVTVRPPINPLTAGGQVIDDVED--LFSKSLQLELVSAKDENK---- 111

Query: 114 KTTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEI-------------------------- 147
            T   +  I+    K+    YE++F VP DFGEI                          
Sbjct: 112 PTISGNAKIKGVVVKDCEVQYEAEFQVPVDFGEIGAILVVNEHALEMYLKDIVLDGLPSG 171

Query: 148 ----TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSD 203
               TC SW+QP     P RIFF NKSYLPS TP+GL++LR  EL +L+G+G G RQ +D
Sbjct: 172 LVTITCESWVQPNTSKDP-RIFFTNKSYLPSKTPNGLQKLRYAELVNLRGNGEGERQKAD 230

Query: 204 RIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSE 247
           RIYDYDVYNDLG+P++D +LKRPVLGGK++PYPRRCRTGRP  +
Sbjct: 231 RIYDYDVYNDLGDPDEDEELKRPVLGGKQHPYPRRCRTGRPHCK 274

Source: Citrus jambhiri

Species: Citrus jambhiri

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053392|ref|XP_002297796.1| predicted protein [Populus trichocarpa] gi|222845054|gb|EEE82601.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/289 (42%), Positives = 159/289 (55%), Gaps = 49/289 (16%)

Query: 1   MLKSALVSQSTPITALFSFSKPFLHGNNHG-FRQIESSSSHKKGPNERAG-------SAA 52
           MLK  L          F   KPF+HG+ H  F     S S K     R G       S A
Sbjct: 1   MLKPQLHQSHLSTKIPFLLPKPFIHGSGHASFPVYSRSLSTKANKKVRVGYKHGSIKSIA 60

Query: 53  AVN----NIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDESFLFGKSFSLELVSTKLDH 108
           +V     ++KA+ T K+T++D  T +   +      D      LFGK+  LELVS +LD 
Sbjct: 61  SVTQQSTDVKAVVTVKQTVVDFWTEIGIERGLDDFTD------LFGKTLLLELVSAELDP 114

Query: 109 KTGSEKTTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEI--------------------- 147
           KTG EK +   +A ++ ++ E +  YE+ F VP DFGEI                     
Sbjct: 115 KTGLEKPSIRKYAHKIDHEGE-DIKYEADFVVPPDFGEIGAIFVENEHHKEMYLHDVVLD 173

Query: 148 ---------TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGV 198
                    TC+SW+  K +N   R+FF NKSYLPS TP G++RLR +EL  L+G+G+G 
Sbjct: 174 GFPTGPVHVTCDSWIHSKFDNKKKRLFFTNKSYLPSQTPSGIRRLREEELVLLRGNGQGQ 233

Query: 199 RQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSE 247
           R+  DRIYDYDVYND+GNP+K P+L RPVLGGKE+PYPRRCRTGRPR E
Sbjct: 234 RKAGDRIYDYDVYNDIGNPDKKPELARPVLGGKEHPYPRRCRTGRPRCE 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103783|ref|XP_002334016.1| predicted protein [Populus trichocarpa] gi|222839571|gb|EEE77908.1| predicted protein [Populus trichocarpa]

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/289 (42%), Positives = 159/289 (55%), Gaps = 49/289 (16%)

Query: 1   MLKSALVSQSTPITALFSFSKPFLHGNNHG-FRQIESSSSHKKGPNERAG-------SAA 52
           MLK  L          F   KPF+HG+ H  F     S S K     R G       S A
Sbjct: 1   MLKPQLHQSHLSTKIPFLLPKPFIHGSGHASFPVYSRSLSTKANKKVRVGHKHGSIKSIA 60

Query: 53  AVN----NIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDESFLFGKSFSLELVSTKLDH 108
           +V     ++KA+ T K+T++D  T +   +    LKD      LFGK+  LELVS +LD 
Sbjct: 61  SVTQQSTDVKAVVTVKQTVVDFWTEIGIERGLDDLKD------LFGKTLLLELVSAELDP 114

Query: 109 KTGSEKTTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEI--------------------- 147
           KTG EK +   +A ++ ++ E +  YE+ F VP DFGEI                     
Sbjct: 115 KTGLEKPSIRKYAHKIDHEGE-DIKYEADFVVPPDFGEIGAIFVENEHHKEMYLHDVVFD 173

Query: 148 ---------TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGV 198
                    TC+SW+  K +N   R+FF NKSYLPS TP+GL +LR +EL  L+G+  G 
Sbjct: 174 GFPTGPVHVTCDSWIHSKFDNKKKRLFFTNKSYLPSETPNGLTKLREEELETLRGNDNGE 233

Query: 199 RQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSE 247
           R+  +RIYDYDVYNDLGNP+ DP+  RPVLGGKE+PYPRRCRTGRPR+E
Sbjct: 234 RKNGERIYDYDVYNDLGNPDSDPETARPVLGGKEHPYPRRCRTGRPRTE 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71999169|gb|AAZ57444.1| lipoxygenase LOX1 [Populus deltoides]

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/290 (42%), Positives = 158/290 (54%), Gaps = 51/290 (17%)

Query: 1   MLKSALVSQSTPITALFSFSKPFLHGNNHG-FRQIESSSSHKKGPNERAG-------SAA 52
           MLK  L          F   KPF+HG+ H  F     S S K     R G       S A
Sbjct: 1   MLKPQLHQSQLSTKNPFLLPKPFIHGSGHASFPVYSRSLSTKANKKVRVGYKHGSIKSIA 60

Query: 53  AVN----NIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDESFLFGKSFSLELVSTKLDH 108
           +V     +IKA+ T K T++D  T +   +      D      LFGK+  LELVS +LD 
Sbjct: 61  SVTQQSTDIKAVVTVKETVVDFWTEIGIERGLDDFTD------LFGKTLLLELVSAELDP 114

Query: 109 KTGSEKTTKPSHAIRVGNDKEGNYL-YESKFNVPFDFGEI-------------------- 147
           KTG EK +   +A ++  D EG  + YE+ F VP DFGE+                    
Sbjct: 115 KTGLEKPSIRKYAHKI--DHEGEDIKYEADFVVPPDFGEVGAIFVENEHHKEMYLHDVVL 172

Query: 148 ----------TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRG 197
                     TC+SW+ PK +N   R+FF NKSYLPS TP+GL +LR++EL  L+G+  G
Sbjct: 173 DGFPTGPVHVTCDSWIHPKFDNKKKRLFFTNKSYLPSETPNGLTKLRKEELETLRGNDSG 232

Query: 198 VRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSE 247
            R+  +RIYDYDVYNDLGNP+ DP+  RPVLGG+E+PYPRRCRTGRPR+E
Sbjct: 233 ERKKGERIYDYDVYNDLGNPDSDPETARPVLGGQEHPYPRRCRTGRPRTE 282

Source: Populus deltoides

Species: Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1853970|dbj|BAA13542.1| CPRD46 protein [Vigna unguiculata]

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/235 (48%), Positives = 140/235 (59%), Gaps = 39/235 (16%)

Query: 49  GSAAAVNNIKAIATSKRTLIDNVTAVITVKSN-----SSLK-DEIDESFLFGKSFSLELV 102
           G    V  IKA+A +K      V A I+V+       SSL  D  D + L GKS  +EL+
Sbjct: 50  GCRNDVTKIKAVAVNKTEKSVKVKATISVQPTIGGIFSSLAIDADDLTDLLGKSLFVELL 109

Query: 103 STKLDHKTGSEKTTKPSHAIRVG-NDKEGNYLYESKFNVPFDFGEI-------------- 147
           S +LD KT  EK      A R   + KE  YL E  F+VP DFGEI              
Sbjct: 110 SAELDPKTKLEKKPIQDFAHRTHRSPKEVRYLAE--FDVPVDFGEIGAILVENEHRREMF 167

Query: 148 ----------------TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHL 191
                           TC SWL PK++N   R+FF +KSYLPS TP+G+KR+R +EL+HL
Sbjct: 168 IKEIILDGFELGPVRFTCESWLHPKKDNPVKRVFFPDKSYLPSETPEGVKRIREEELQHL 227

Query: 192 QGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRS 246
           +G+G+G R+  DRIYDYDVYNDLG+P+KDP L+RPVLGG E+PYPRRCRTGRPRS
Sbjct: 228 RGNGQGERKKFDRIYDYDVYNDLGDPDKDPDLQRPVLGGAEHPYPRRCRTGRPRS 282

Source: Vigna unguiculata

Species: Vigna unguiculata

Genus: Vigna

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308943877|gb|ADO51752.1| lipoxygenase [Camellia sinensis]

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/279 (42%), Positives = 153/279 (54%), Gaps = 41/279 (14%)

Query: 9   QSTPITALFSFSKPFLHGNNHGFRQIESSSSHKKGPNERAGSAAAV-NNIKAIATSKRTL 67
           QS  +  L  + KPFL G       +        G  +  G    V + IKAIAT+    
Sbjct: 8   QSHTVQILIPWHKPFLSGTASPSSSLLRLKPGFCGNQKDKGRVRCVPSTIKAIATTATEQ 67

Query: 68  IDNVTAVITVK-------SNSSLKDEIDE-SFLFGKSFSLELVSTKLDHKTGSEKTTKPS 119
             +V AV++VK        N  L   +D+ + L GKS  LELVS +LD KTG EK T   
Sbjct: 68  TTSVKAVVSVKLTVGGILYNLGLSHGLDDIADLLGKSIQLELVSAELDPKTGLEKETIKG 127

Query: 120 HAIRVGNDKEGNYLYESKFNVPFDFGEI-------------------------------T 148
           +A R   +K+    YE  F +P  +GEI                               T
Sbjct: 128 YAHRKSQEKD-EVKYECNFVIPEGYGEIGAVLVENEHHKEMYLKNIVFHGFPPGGPVDVT 186

Query: 149 CNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDY 208
           CNSW+  K ++   RIFF NKSYLPS TPDGLKRLR ++L +L+G+G+G R+  +RIYDY
Sbjct: 187 CNSWVASKFDSPHKRIFFTNKSYLPSQTPDGLKRLREEDLENLRGNGQGERKTYERIYDY 246

Query: 209 DVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSE 247
           DVYND+G+P+  P  KRPVLGGK++PYPRRCRTGRPRS+
Sbjct: 247 DVYNDIGDPDSSPTSKRPVLGGKQHPYPRRCRTGRPRSK 285

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|213876486|gb|ACJ54281.1| lipoxygenase [Camellia sinensis]

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 120/282 (42%), Positives = 155/282 (54%), Gaps = 48/282 (17%)

Query: 9   QSTPITALFSFSKPFLHGNNHGFRQIESSSSHKKGPNERAGSAAAVNNIKAIATSK---- 64
            S P+  L  + KPF+        + + SS  K+    R  ++     IKAI++S     
Sbjct: 8   HSHPVLNLLPWRKPFISS----LLRPKQSSLRKQNVCFRYVNSNHSTTIKAISSSSSTSS 63

Query: 65  --------RTLIDNVTAVITVKSNSSLKDEIDE-SFLFGKSFSLELVSTKLDHKTGSEKT 115
                   +T++    AV  + SN  L   +D+ + LFGKS  LELVS  LD KTG EK 
Sbjct: 64  DQTTITSVKTVVTAQVAVGGLLSNLGLDRGLDDITDLFGKSILLELVSADLDPKTGLEKE 123

Query: 116 TKPSHAIRVGNDKEGNYLYESKFNVPFDFGEI---------------------------- 147
           T   +A R+  D E    YE  F V  +FGEI                            
Sbjct: 124 TIKGYAHRMSQD-ENEVKYELNFKVAEEFGEIGAVLVENEHHKEMYLKNIAFDGFPNGPV 182

Query: 148 --TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRI 205
             TCNSW+  K +N   RIFF NKSYLP  TP GLKRLR++EL +LQGDG+G R+  DRI
Sbjct: 183 CVTCNSWVASKFDNPEKRIFFTNKSYLPGQTPSGLKRLRKKELENLQGDGQGERKTHDRI 242

Query: 206 YDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSE 247
           YDYDVYND+G+P+ + +LKRPVLGGK++PYPRRCRTGRPR +
Sbjct: 243 YDYDVYNDIGDPDSNSELKRPVLGGKKHPYPRRCRTGRPRCK 284

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057525|ref|XP_002299250.1| predicted protein [Populus trichocarpa] gi|222846508|gb|EEE84055.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 117/289 (40%), Positives = 156/289 (53%), Gaps = 48/289 (16%)

Query: 1   MLKSALVSQSTPITALFSFSKPFLHGNNHGFRQIE----SSSSHKKGPNERAGSAAAVNN 56
           MLK  +  QS P  AL  F+K F+ GN+H    ++    +    K G   R+  A A  +
Sbjct: 1   MLKPQVYQQSNPTRALLRFTKQFIPGNDHSSFHLKPRPKAQKHFKTGFKPRSSKAIASLS 60

Query: 57  ------IKAIATSKRTLIDNVTAVIT-VKSNSSLKDEIDESFLFGKSFSLELVSTKLDHK 109
                 +KAI   KR    NV  ++T +  +  L D  D   L GK+  LEL+S +L  K
Sbjct: 61  QDTKIKVKAIVKVKR----NVGGLLTSLGIDQGLNDIQD---LLGKTILLELISAELHPK 113

Query: 110 TGSEKTTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEI---------------------- 147
           +  EK T   +A R  +       YE+ F VP DFGE+                      
Sbjct: 114 SELEKPTIKGYAHRRLSQANEYVKYEAGFEVPLDFGEVGAISVENGYHTEVFLQEIVLNG 173

Query: 148 --------TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVR 199
                   TC SW+  K +N   R+FF NKSY+PS TP GL+RLR++E+  L+G+G G +
Sbjct: 174 LPQGNINVTCGSWIHSKYKNNRKRVFFTNKSYVPSQTPSGLRRLRKEEIIILRGNGLGKQ 233

Query: 200 QLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSEL 248
           Q  DRIYDYDVYND+G+P+K  +L RPVLGGK+ PYPRRCRTGRPRSE+
Sbjct: 234 QAGDRIYDYDVYNDIGDPDKSSELARPVLGGKKLPYPRRCRTGRPRSEI 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|229554825|gb|ACQ76787.1| lipoxygenase [Camellia sinensis]

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/284 (41%), Positives = 155/284 (54%), Gaps = 51/284 (17%)

Query: 9   QSTPITALFSFSKPFLHGNNHGFRQIESSSSHKKGPN------ERAGSAAAVNNIKAIAT 62
           QS  +  L  + KPFL G         SSS  +  P       ++       + IKAIAT
Sbjct: 8   QSHTVQILIPWHKPFLSGTAS-----PSSSLLRLKPGFCRNQKDKGRVRCVPSTIKAIAT 62

Query: 63  SKRTLIDNVTAVITVK-------SNSSLKDEIDE-SFLFGKSFSLELVSTKLDHKTGSEK 114
           +      +V AV++VK        N  L   +D+ + L GKS  LELVS +LD KTG EK
Sbjct: 63  TATEQTTSVNAVVSVKLTVGGILYNLGLSHGLDDIADLLGKSIQLELVSAELDPKTGLEK 122

Query: 115 TTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEI--------------------------- 147
            T   +A R   +K+    YE  F +P  +G+I                           
Sbjct: 123 ETIKGYAHRKSQEKD-EVKYECNFVIPEGYGDIGAVLVENEHHKEMYLKNIVFDGFPPGG 181

Query: 148 ----TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSD 203
               TCNSW+  K ++   RIFF NKSYLPS TPDGLKRLR ++L +L+G+G+G R+  +
Sbjct: 182 PVDVTCNSWVASKFDSPHKRIFFTNKSYLPSQTPDGLKRLREEDLENLRGNGQGERKTYE 241

Query: 204 RIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSE 247
           RIYDYDVYND+G+P+  P  KRPVLGGK++PYPRRCRTGRPRS+
Sbjct: 242 RIYDYDVYNDIGDPDSSPTSKRPVLGGKQHPYPRRCRTGRPRSK 285

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544332|ref|XP_002513228.1| lipoxygenase, putative [Ricinus communis] gi|223547726|gb|EEF49219.1| lipoxygenase, putative [Ricinus communis]

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 116/268 (43%), Positives = 150/268 (55%), Gaps = 44/268 (16%)

Query: 21  KPFLHGNNHG----FRQIESSSSHKKGPNERAGSAAAVNNIKAIATSKRTLIDNVTAVIT 76
           KP +HG        FRQ     + KK  N      A++ + KAI+     L+   T  + 
Sbjct: 21  KPCIHGGKASSVAPFRQ--QKCNPKKHQNRSLSVRASIID-KAISAVTHKLVITATVTVK 77

Query: 77  -----VKSNSSLKDEIDE-SFLFGKSFSLELVSTKLDHKTGSEKTTKPSHA-IRVGNDKE 129
                + S+  +   +DE + + GKS  LELVS +LD K+G EK    S+A I +G  K 
Sbjct: 78  VTVGGIISSIGITQPLDELTDIIGKSLLLELVSAELDPKSGLEKDPVKSYAHIHLGTHKP 137

Query: 130 GNYLYESKFNVPFDFGEI------------------------------TCNSWLQPKEEN 159
           G    E+KF VP DFGE+                              +CNSW   K +N
Sbjct: 138 GEVKLEAKFTVPADFGEVGAVLVENEHHKEIFIESIVLEGFPIGPLTVSCNSWAHSKHDN 197

Query: 160 TPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEK 219
              RIFF NKSYLPS TPDGLKRLR +EL +L+G+G+G R+  +RIYDYD YNDLG+P+ 
Sbjct: 198 PKKRIFFTNKSYLPSDTPDGLKRLREEELENLRGNGQGERKSFERIYDYDTYNDLGDPDS 257

Query: 220 DPKLKRPVLGGKEYPYPRRCRTGRPRSE 247
           DP LKRPVLGG E+PYPRRCRTGRPR++
Sbjct: 258 DPDLKRPVLGGSEHPYPRRCRTGRPRTK 285

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
UNIPROTKB|P38419	924	CM-LOX1 "Lipoxygenase 7, chlor	0.402	0.109	0.622	8.9e-45
TAIR|locus:2018848	919	LOX3 "lipoxygenase 3" [Arabido	0.490	0.133	0.568	3.5e-33
TAIR|locus:2030215	926	LOX4 "lipoxygenase 4" [Arabido	0.505	0.137	0.519	1.8e-31
TAIR|locus:2008808	917	LOX6 "lipoxygenase 6" [Arabido	0.374	0.102	0.568	6.8e-31
TAIR|locus:2096915	896	LOX2 "lipoxygenase 2" [Arabido	0.517	0.145	0.477	2.1e-27
TAIR|locus:2011030	859	LOX1 "lipoxygenase 1" [Arabido	0.382	0.111	0.554	9.9e-23
TAIR|locus:2087837	886	LOX5 [Arabidopsis thaliana (ta	0.378	0.107	0.536	1e-22
UNIPROTKB|P29250	870	LOX1.1 "Linoleate 9S-lipoxygen	0.501	0.144	0.449	7.3e-19

UNIPROTKB|P38419 CM-LOX1 "Lipoxygenase 7, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 356 (130.4 bits), Expect = 8.9e-45, Sum P(2) = 8.9e-45
 Identities = 66/106 (62%), Positives = 82/106 (77%)

Query:   147 ITCNSWLQPK---EENTPT-RIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLS 202
             I CNSW+QPK   +E TP+ RIFFANK+YLP  TP GL+  R+ +L+  +GDG G R+  
Sbjct:   198 IRCNSWVQPKSVGDEGTPSKRIFFANKTYLPGQTPAGLRSYRKNDLQQKRGDGTGEREAD 257

Query:   203 DRIYDYDVYNDLGNPEKDPKLKRPVLGG-KEYPYPRRCRTGRPRSE 247
             DR+YDYDVYNDLGNP+ +  L RPVLGG K++PYPRRCRTGRP S+
Sbjct:   258 DRVYDYDVYNDLGNPDSNGDLARPVLGGNKQFPYPRRCRTGRPPSK 303

GO:0009607 "response to biotic stimulus" evidence=ISS;IMP

GO:0009611 "response to wounding" evidence=ISS;IMP

GO:0016166 "phytoene dehydrogenase activity" evidence=ISS;IDA

GO:0051707 "response to other organism" evidence=ISS;IDA

TAIR|locus:2018848 LOX3 "lipoxygenase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 3.5e-33, P = 3.5e-33
 Identities = 71/125 (56%), Positives = 90/125 (72%)

Query:   121 AIRVGNDKEGNYLYESKFNVPFDFGEI--TCNSWLQPKEENTPTRIFFANKSYLPSATPD 178
             AI V N  +  +  ES     F  G +   CNSW+Q ++++   RIFF N+ YLP+ TP 
Sbjct:   174 AITVMNKHQKEFFLESITIEGFALGPVHFPCNSWVQSQKDHPDKRIFFTNQPYLPNETPS 233

Query:   179 GLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRR 238
             GL+ LR +EL++L+GDG GVR+LSDRIYD+DVYNDLGNP+K  +L RP LGGKE PYPRR
Sbjct:   234 GLRVLREKELKNLRGDGSGVRKLSDRIYDFDVYNDLGNPDKSSELSRPKLGGKEVPYPRR 293

Query:   239 CRTGR 243
             CRTGR
Sbjct:   294 CRTGR 298

GO:0009507 "chloroplast" evidence=ISM

GO:0009611 "response to wounding" evidence=IEP;RCA;TAS

GO:0009644 "response to high light intensity" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0016165 "lipoxygenase activity" evidence=IDA

GO:0009620 "response to fungus" evidence=IEP;RCA

GO:0009555 "pollen development" evidence=IGI

GO:0009901 "anther dehiscence" evidence=IGI

GO:0048653 "anther development" evidence=IGI

GO:0080086 "stamen filament development" evidence=IGI

GO:0034440 "lipid oxidation" evidence=IDA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;TAS

GO:0010200 "response to chitin" evidence=RCA

GO:0006952 "defense response" evidence=TAS

GO:0040007 "growth" evidence=TAS

TAIR|locus:2030215 LOX4 "lipoxygenase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.8e-31, P = 1.8e-31
 Identities = 67/129 (51%), Positives = 90/129 (69%)

Query:   121 AIRVGNDKEGNYLYESKFNVPFDFGEI--TCNSWLQPKEENTPTRIFFANKSYLPSATPD 178
             AI V N  +  +  ES     F  G +   CNSW+Q ++++   RI F N+ YLPS TP 
Sbjct:   180 AITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPSKRILFTNQPYLPSETPS 239

Query:   179 GLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRR 238
             GL+ LR +EL +L+G+G+G R+LSDRIYDYDVYND+GNP+   +L RP LGG+E+PYPRR
Sbjct:   240 GLRTLREKELENLRGNGKGERKLSDRIYDYDVYNDIGNPDISRELARPTLGGREFPYPRR 299

Query:   239 CRTGRPRSE 247
             CRTGR  ++
Sbjct:   300 CRTGRSSTD 308

GO:0009507 "chloroplast" evidence=ISM

GO:0009611 "response to wounding" evidence=IEP;RCA;TAS

GO:0009617 "response to bacterium" evidence=IEP

GO:0016165 "lipoxygenase activity" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

GO:0009555 "pollen development" evidence=IGI

GO:0009901 "anther dehiscence" evidence=IGI

GO:0048653 "anther development" evidence=IGI

GO:0080086 "stamen filament development" evidence=IGI

GO:0034440 "lipid oxidation" evidence=IDA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;TAS

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

GO:0006952 "defense response" evidence=TAS

GO:0040007 "growth" evidence=TAS

TAIR|locus:2008808 LOX6 "lipoxygenase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 6.8e-31, Sum P(2) = 6.8e-31
 Identities = 54/95 (56%), Positives = 70/95 (73%)

Query:   150 NSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYD 209
             N+W+  K +N   RI F ++  LPS TPDG+K LR ++L  ++GDG+G R+  +RIYDYD
Sbjct:   199 NTWIHSKNDNPQARIIFRSQPCLPSETPDGIKELREKDLVSVRGDGKGERKPHERIYDYD 258

Query:   210 VYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRP 244
             VYNDLG+P K  ++ RPVLG  E PYPRRCRTGRP
Sbjct:   259 VYNDLGDPRKTERV-RPVLGVPETPYPRRCRTGRP 292

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016165 "lipoxygenase activity" evidence=ISS;IDA

GO:0040007 "growth" evidence=ISS

GO:0034440 "lipid oxidation" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IMP;RCA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2096915 LOX2 "lipoxygenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 2.1e-27, P = 2.1e-27
 Identities = 64/134 (47%), Positives = 87/134 (64%)

Query:   118 PSHAIRVGNDKEGN-YLYESKFNVPFDFGEITCNSWLQPKEENTPTRIFFANKSYLPSAT 176
             P  AI++ N      +L   +  +P      TC SW+ PK  +   RIFF++KSYLPS T
Sbjct:   149 PVGAIKIQNQYHRQLFLKGVELKLPGGSITFTCESWVAPKSVDPTKRIFFSDKSYLPSQT 208

Query:   177 PDGLKRLRRQELRHLQGDGRG-VRQLS--DRIYDYDVYNDLGNPEKDPKLKRPVLGGKEY 233
             P+ LK+ R++EL  LQG  R  V + +  +RIYDYDVYND+G+P+ DP+L RPV+GG  +
Sbjct:   209 PEPLKKYRKEELETLQGKNREEVGEFTKFERIYDYDVYNDVGDPDNDPELARPVIGGLTH 268

Query:   234 PYPRRCRTGRPRSE 247
             PYPRRC+TGR   E
Sbjct:   269 PYPRRCKTGRKPCE 282

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0080027 "response to herbivore" evidence=IEP

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0016165 "lipoxygenase activity" evidence=IMP;IDA

GO:0009620 "response to fungus" evidence=IEP

GO:0034440 "lipid oxidation" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IMP;RCA;TAS

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0009414 "response to water deprivation" evidence=TAS

GO:0051707 "response to other organism" evidence=TAS

TAIR|locus:2011030 LOX1 "lipoxygenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 9.9e-23, P = 9.9e-23
 Identities = 56/101 (55%), Positives = 68/101 (67%)

Query:   149 CNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDY 208
             CNSW+ P +  T  R+FF+NK+YLP  TP  L + R +EL  L+G G G  +  DR+YDY
Sbjct:   143 CNSWIYPAKHYTTDRVFFSNKTYLPHETPATLLKYREEELVSLRGTGEGELKEWDRVYDY 202

Query:   209 DVYNDLGNPEKDPKLKRPVLGG-KEYPYPRRCRTGR-PRSE 247
               YNDLG P K+P   RPVLGG +EYPYPRR RTGR P  E
Sbjct:   203 AYYNDLGVPPKNP---RPVLGGTQEYPYPRRGRTGRKPTKE 240

GO:0005737 "cytoplasm" evidence=ISM

GO:0010311 "lateral root formation" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0016165 "lipoxygenase activity" evidence=ISS;IMP;IDA

GO:0034440 "lipid oxidation" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA;TAS

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;TAS

GO:0006952 "defense response" evidence=TAS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IEP

GO:0030397 "membrane disassembly" evidence=TAS

GO:0040007 "growth" evidence=TAS

TAIR|locus:2087837 LOX5 [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 52/97 (53%), Positives = 67/97 (69%)

Query:   149 CNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLS-DRIYD 207
             CNSW+ P       R+FF+NK+YLPS TP+ +K LR +EL++L+G+ +G      DR+YD
Sbjct:   162 CNSWIYPNHRYRSDRVFFSNKAYLPSETPELIKELREEELKNLRGNEKGGEFKEWDRVYD 221

Query:   208 YDVYNDLGNPEKDPKLKRPVLGGK-EYPYPRRCRTGR 243
             Y  YNDLG P+K P   RPVLGG  E PYPRR +TGR
Sbjct:   222 YAYYNDLGAPDKGPDSVRPVLGGSPELPYPRRGKTGR 258

GO:0005737 "cytoplasm" evidence=ISM

GO:0016165 "lipoxygenase activity" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0010311 "lateral root formation" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0034440 "lipid oxidation" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:1900366 "negative regulation of defense response to insect" evidence=IMP

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

UNIPROTKB|P29250 LOX1.1 "Linoleate 9S-lipoxygenase 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 238 (88.8 bits), Expect = 7.3e-19, P = 7.3e-19
 Identities = 62/138 (44%), Positives = 79/138 (57%)

Query:   113 EKTTKPSHAIRVGNDKEGNYLYESKF--NVPFDFGEIT--CNSWLQPKEENTPTRIFFAN 168
             EK   P  AI V N+    +  ++    NVP   G +    NSW+ P  +    R+FF+N
Sbjct:   102 EKMGIPG-AIIVKNNHAAEFFLKTITLDNVP-GHGAVVFVANSWIYPASKYRYNRVFFSN 159

Query:   169 KSYLPSATPDGLKRLRRQELRHLQGDGR-GVRQLSDRIYDYDVYNDLGNPEK-DPKLKRP 226
              + LPS  P  LK  R  ELR+L+GD + G  Q  DR+Y YDVYNDLG P+  +P   RP
Sbjct:   160 DTSLPSKMPAALKPYRDDELRNLRGDDQQGPYQEHDRVYRYDVYNDLGEPDSGNP---RP 216

Query:   227 VLGGK-EYPYPRRCRTGR 243
             VLGG  + PYPRR RTGR
Sbjct:   217 VLGGSPDRPYPRRGRTGR 234


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.132   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      251       251   0.00081  114 3  11 23  0.37    34
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  184 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.43u 0.10s 22.53t   Elapsed:  00:00:01
  Total cpu time:  22.43u 0.10s 22.53t   Elapsed:  00:00:01
  Start:  Sat May 11 02:25:37 2013   End:  Sat May 11 02:25:38 2013

GO:0005737 "cytoplasm" evidence=IDA

GO:0009607 "response to biotic stimulus" evidence=IDA

GO:0009611 "response to wounding" evidence=IDA

GO:0016165 "lipoxygenase activity" evidence=ISS;IDA

GO:0051707 "response to other organism" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.13.11	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	251
PLN02264	919	PLN02264, PLN02264, lipoxygenase	2e-49
PLN02305	918	PLN02305, PLN02305, lipoxygenase	7e-46
PLN02337	866	PLN02337, PLN02337, lipoxygenase	6e-44
pfam00305	667	pfam00305, Lipoxygenase, Lipoxygenase	7e-26
cd01751	137	cd01751, PLAT_LH2, PLAT/ LH2 domain of plant lipox	1e-19
smart00308	105	smart00308, LH2, Lipoxygenase homology 2 (beta bar	0.001

>gnl|CDD|215148 PLN02264, PLN02264, lipoxygenase

 Score =  173 bits (439), Expect = 2e-49
 Identities = 92/231 (39%), Positives = 131/231 (56%), Gaps = 43/231 (18%)

Query: 52  AAVN-NIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDESFLFGKSFSLELVSTKLDHKT 110
            AV   ++A+ T +    +++   + VK   +  D+I      G++  LEL+ST++D KT
Sbjct: 81  KAVKFKVRAVVTVRNKNKEDLKETL-VKHLDAFTDKI------GRNVVLELISTQVDPKT 133

Query: 111 GSEKTTKPSHAIR----VGNDKEGNYLYESKFNVPFDFG------------------EIT 148
              K +K +  ++      N K     Y ++F V   FG                   IT
Sbjct: 134 KEPKKSKAA-VLKDWSKKSNIKAERVHYTAEFTVDSAFGSPGAITVTNKHQKEFFLESIT 192

Query: 149 ------------CNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGR 196
                       CNSW+Q ++++   RIFF N+ YLPS TP GL+ LR +ELR+L+GDG+
Sbjct: 193 IEGFACGPVHFPCNSWVQSQKDHPGKRIFFTNQPYLPSETPAGLRALREKELRNLRGDGK 252

Query: 197 GVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSE 247
           GVR+LSDRIYD+DVYNDLGNP+K  +L RP LGGK+ PYPRRCRTGR  ++
Sbjct: 253 GVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKKIPYPRRCRTGRLPTD 303

Length = 919

>gnl|CDD|215174 PLN02305, PLN02305, lipoxygenase

 Score =  163 bits (414), Expect = 7e-46
 Identities = 98/261 (37%), Positives = 138/261 (52%), Gaps = 52/261 (19%)

Query: 32  RQIESSSSHKKGPNERAGSAAAVNNIKAIA-----TSKRTLIDNVTAVITVKSNSSLKDE 86
             I +  S +    E +G  +A  ++   +      SK     +V AVIT++    +K++
Sbjct: 40  GSIRAVISSEDKAVEESGGESANKSVDGSSLLPSSRSKYAGGIDVRAVITIRKK--IKEK 97

Query: 87  IDESF-----LF----GKSFSLELVSTKLDHKTGSEKTTKPSHAIRVGNDKEGNY----L 133
           I E F      F    G+   ++LVS ++D  TGS K+ + S  +R    K  N      
Sbjct: 98  ITEKFEDQWEYFMNGIGQGILIQLVSEEIDPVTGSGKSVESS--VRGWLPKPSNDPHIVE 155

Query: 134 YESKFNVPFDFG------------------EIT------------CNSWLQPKEENTPTR 163
           Y + F VPFDFG                  EI              N+W+  +++N  +R
Sbjct: 156 YAADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESR 215

Query: 164 IFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKL 223
           I F N++YLPS TP G+K LRR++L  L+G+G+G R+  DRIYDY  YNDLGNP+KD  L
Sbjct: 216 IIFRNQAYLPSQTPPGIKDLRREDLLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDL 275

Query: 224 KRPVLGGKEYPYPRRCRTGRP 244
            RPVLGG+E+PYPRRCRTGRP
Sbjct: 276 ARPVLGGEEWPYPRRCRTGRP 296

Length = 918

>gnl|CDD|215193 PLN02337, PLN02337, lipoxygenase

 Score =  157 bits (399), Expect = 6e-44
 Identities = 81/217 (37%), Positives = 106/217 (48%), Gaps = 62/217 (28%)

Query: 80  NSSLKDEIDESFLFGKSFSLELVST-------KLDHKTGSEK------TTKPSHAIRVGN 126
           N+S+ D + E  L GK  SL+L+S+        L  K G E       TT  S       
Sbjct: 39  NASVLDRVHE--LLGKGVSLQLISSTVVDPENGLRGKLGKEAYLEKWITTITSLTAG--- 93

Query: 127 DKEGNYLYESKFNVPFDFGE----------------------IT-------------CNS 151
                   ES F V FD+ E                      +T             CNS
Sbjct: 94  --------ESAFKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNS 145

Query: 152 WLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVY 211
           W+ P +     R+FF+NK+YLPS TP  L+  R +EL +L+GDG+G  +  DR+YDYD Y
Sbjct: 146 WIYPAKRYRYDRVFFSNKTYLPSQTPAPLRPYREEELVNLRGDGKGELKEWDRVYDYDYY 205

Query: 212 NDLGNPEKDPKLKRPVLGG-KEYPYPRRCRTGRPRSE 247
           NDLG+P+K     RPVLGG +EYPYPRR RTGR  ++
Sbjct: 206 NDLGDPDKGNPYARPVLGGSQEYPYPRRGRTGRKPTK 242

Length = 866

>gnl|CDD|215847 pfam00305, Lipoxygenase, Lipoxygenase

 Score =  105 bits (264), Expect = 7e-26
 Identities = 44/72 (61%), Positives = 52/72 (72%), Gaps = 1/72 (1%)

Query: 177 PDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGG-KEYPY 235
           P  L++ R +EL  L+GDG G R+  DRIYDYDVYNDLGNP+K  +L RPVLGG   YPY
Sbjct: 1   PAPLRKYREEELETLRGDGTGERKEWDRIYDYDVYNDLGNPDKGEELARPVLGGSSTYPY 60

Query: 236 PRRCRTGRPRSE 247
           PRR RTGR  + 
Sbjct: 61  PRRGRTGRKPTR 72

Length = 667

>gnl|CDD|238849 cd01751, PLAT_LH2, PLAT/ LH2 domain of plant lipoxygenase related proteins

 Score = 81.6 bits (202), Expect = 1e-19
 Identities = 41/135 (30%), Positives = 51/135 (37%), Gaps = 37/135 (27%)

Query: 71  VTAVITVK------SNSSLKDEIDESFLFGKSFSLELVSTKLDHKTGSEKTTKPSHAIRV 124
           V A +TV        N       D   L G+S  LELVS++LD KTG  K  K +     
Sbjct: 3   VKATVTVMKKNKLDLNDDGSGLDDLDDLLGRSLLLELVSSELDPKTGKGKKGKAAFLEGW 62

Query: 125 GNDKEGNYLYESKFNVPFDFGEI-------------------------------TCNSWL 153
           G    G   YE++F VP  FG                                  CNSW+
Sbjct: 63  GKSLAGESAYEAEFEVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWV 122

Query: 154 QPKEENTPTRIFFAN 168
            PK++    RIFF N
Sbjct: 123 YPKKDYPDKRIFFPN 137

Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins. Length = 137

>gnl|CDD|214608 smart00308, LH2, Lipoxygenase homology 2 (beta barrel) domain

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 39/96 (40%)

Query: 93  FGKSFSLELVSTKLDHKTGSEKTTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEI----- 147
              S SL LV  + D      K +K  +  +    +   Y +   F+V  DFGE+     
Sbjct: 17  TTASVSLSLVGAEGD-----GKESKLDYLFKGIFARGSTYEFT--FDVDEDFGELGAVKI 69

Query: 148 ---------------------------TCNSWLQPK 156
                                       CNSW+ P 
Sbjct: 70  KNEHRHPEWFLKSITVKDLPTGGKYHFPCNSWVYPD 105

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
PLN02264	919	lipoxygenase	100.0
PLN02337	866	lipoxygenase	100.0
PLN02305	918	lipoxygenase	100.0
PF00305	667	Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Li	100.0
cd01751	137	PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase re	99.97
smart00308	105	LH2 Lipoxygenase homology 2 (beta barrel) domain.	97.31
PF01477	113	PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxyg	96.85
cd00113	116	PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin	94.21

>PLN02264 lipoxygenase

Probab=100.00  E-value=1.3e-79  Score=622.90  Aligned_cols=190  Identities=44%  Similarity=0.809  Sum_probs=177.8

Q ss_pred             hhcccceeEEeeeeeEEEEeeEEEEeecCCcccccccc-cccCCeeEEEEeeccccCCCCCce----eccCCcccccCCC
Q 042804           53 AVNNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDES-FLFGKSFSLELVSTKLDHKTGSEK----TTKPSHAIRVGND  127 (251)
Q Consensus        53 ~~~~ikg~vv~~~k~~l~~~~~~~v~~~~~~~~~lD~~-dllGk~v~LqLVSa~~d~~tg~gk----a~l~~w~~~~~~~  127 (251)
                      +.-+|+|+|++|++++++++++.+        +++|++ |++||+|+|||||++++|+||+|+    ++|++|+++ ..+
T Consensus        83 ~~~~i~~~v~~~~~~~~~~~~~~~--------~~~D~~~~~~G~~v~lqLVSs~~~~~tg~~~~~~~a~l~~~~~~-~~~  153 (919)
T PLN02264         83 VKFKVRAVVTVRNKNKEDLKETLV--------KHLDAFTDKIGRNVVLELISTQVDPKTKEPKKSKAAVLKDWSKK-SNI  153 (919)
T ss_pred             eEEEEEEEEEEEeccccchhhccc--------chhhHHHHHhCCeEEEEEEeccccCCCCCccCCCcchhcccccC-CCC
Confidence            444688888888888888888777        889999 999999999999999999998443    999999987 454


Q ss_pred             CCCceEEEEEEEeeCCCCc------------------------------EEeeecccCCCCCCCCeEEEcCCCCCCCCCc
Q 042804          128 KEGNYLYESKFNVPFDFGE------------------------------ITCNSWLQPKEENTPTRIFFANKSYLPSATP  177 (251)
Q Consensus       128 ~~~~~~y~~~F~vd~~fG~------------------------------F~CnSWV~~~~~~~~~RiFFsNk~YLPs~TP  177 (251)
                      .+++++|+|+|+||++||+                              |+|||||||+++|+.+||||+||+|||+|||
T Consensus       154 ~~~~~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~g~v~F~cnSWV~p~~~~~~~RiFF~Nk~YLP~~tP  233 (919)
T PLN02264        154 KAERVHYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPGKRIFFTNQPYLPSETP  233 (919)
T ss_pred             CCCceEEEEEEEeccccCCcceEEEEeCCCceEEEEEEEeccCCCCcEEEecCCccccCcCCCCCceEecCCCcCcccCC
Confidence            5888899999999999999                              9999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCccccccCCccccccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 042804          178 DGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSELGSV  251 (251)
Q Consensus       178 ~gL~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYNDLG~PD~~~~~~RPvLGG~~~PYPRRcRTGR~pt~tD~~  251 (251)
                      +||++|||+||++|||||+||||+|||||||||||||||||++++++||||||++||||||||||||||+|||-
T Consensus       234 ~~l~~~Re~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~dp~  307 (919)
T PLN02264        234 AGLRALREKELRNLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKKIPYPRRCRTGRLPTDSDMM  307 (919)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcCCcccchhhhhhhccCCCCCCCccccCcccCCCCCCCCCCCcCCCCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999779999999999999999983

>PLN02337 lipoxygenase

Probab=100.00  E-value=2.4e-79  Score=620.53  Aligned_cols=189  Identities=37%  Similarity=0.661  Sum_probs=179.8

Q ss_pred             cccceeEEeeeeeEEEEeeEEEEeecCCcccccccc-cccCCeeEEEEeeccccC-CCC-Cce----eccCCcccccCCC
Q 042804           55 NNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDES-FLFGKSFSLELVSTKLDH-KTG-SEK----TTKPSHAIRVGND  127 (251)
Q Consensus        55 ~~ikg~vv~~~k~~l~~~~~~~v~~~~~~~~~lD~~-dllGk~v~LqLVSa~~d~-~tg-~gk----a~l~~w~~~~~~~  127 (251)
                      .+|||+|++|+|++++++++.+        +++|++ |++||+|+|||||++++| +|| +||    ++|++|+++.+.+
T Consensus        19 ~~~~~~v~l~~k~~ld~~~~~~--------~~lD~~~~l~G~~v~lqLvS~~~~~p~~g~~gk~~k~a~l~~w~~~~~~~   90 (866)
T PLN02337         19 EKIKGTVVLMKKNVLDFNDFNA--------SVLDRVHELLGKGVSLQLISSTVVDPENGLRGKLGKEAYLEKWITTITSL   90 (866)
T ss_pred             ceEEEEEEEEEecccchhhccc--------chhhhHHHhcCCeEEEEEEeccccccccCCccccCCccchhhhccCCCCC
Confidence            4799999999999999999888        899999 999999999999999997 777 443    9999999886665


Q ss_pred             CCCceEEEEEEEeeCCCCc-------------------------------EEeeecccCCCCCCCCeEEEcCCCCCCCCC
Q 042804          128 KEGNYLYESKFNVPFDFGE-------------------------------ITCNSWLQPKEENTPTRIFFANKSYLPSAT  176 (251)
Q Consensus       128 ~~~~~~y~~~F~vd~~fG~-------------------------------F~CnSWV~~~~~~~~~RiFFsNk~YLPs~T  176 (251)
                      .+++++|+|+|+||++||+                               |+|||||||+++|+.+||||+||+|||+||
T Consensus        91 ~~~~~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~~~~~~~RiFF~nk~ylp~~t  170 (866)
T PLN02337         91 TAGESAFKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPAKRYRYDRVFFSNKTYLPSQT  170 (866)
T ss_pred             CCCceEEEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccCCCCCCCceEecCCCcCcccc
Confidence            6888999999999999999                               999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhcCCCccccccCCccccccccccCCCCCCCCCCCCcccCC-CCCCCCCCCCCCCCCCCCCCC
Q 042804          177 PDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGG-KEYPYPRRCRTGRPRSELGSV  251 (251)
Q Consensus       177 P~gL~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYNDLG~PD~~~~~~RPvLGG-~~~PYPRRcRTGR~pt~tD~~  251 (251)
                      |+||++|||+||++|||||+||||+|||||||||||||||||++++++|||||| ++|||||||||||+||+|||.
T Consensus       171 P~~l~~~R~~eL~~lrG~g~gerk~~dRiYdyd~YnDlg~pd~~~~~~RpvLGg~~~~pyPRR~rTgr~~t~~dp~  246 (866)
T PLN02337        171 PAPLRPYREEELVNLRGDGKGELKEWDRVYDYDYYNDLGDPDKGNPYARPVLGGSQEYPYPRRGRTGRKPTKTDPN  246 (866)
T ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCcccchhhhhhhccCCCCCCCccccCccCCCCCCCCCCCcccCCCCCCCCCCc
Confidence            999999999999999999999999999999999999999999999999999999 779999999999999999983

>PLN02305 lipoxygenase

Probab=100.00  E-value=4.8e-79  Score=618.81  Aligned_cols=188  Identities=42%  Similarity=0.815  Sum_probs=178.2

Q ss_pred             cccceeEEeeeeeEEEEeeEEEEeecCCcccccccc-cccCCeeEEEEeeccccCCCCCce---eccCCcccccCCCCCC
Q 042804           55 NNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDES-FLFGKSFSLELVSTKLDHKTGSEK---TTKPSHAIRVGNDKEG  130 (251)
Q Consensus        55 ~~ikg~vv~~~k~~l~~~~~~~v~~~~~~~~~lD~~-dllGk~v~LqLVSa~~d~~tg~gk---a~l~~w~~~~~~~~~~  130 (251)
                      .+|||+|++|+|++++++++.+        +++|++ |++||+|+|||||++++|+||+||   ++|++|+++ +...++
T Consensus        82 ~~i~~~v~~~~~~~~~~~~~~~--------~~~d~~~~~~g~~v~lqLvS~~~~~~~g~gk~~~~~l~~~~~~-~~~~~~  152 (918)
T PLN02305         82 IDVRAVITIRKKIKEKITEKFE--------DQWEYFMNGIGQGILIQLVSEEIDPVTGSGKSVESSVRGWLPK-PSNDPH  152 (918)
T ss_pred             CeEEEEEEEEeecccchhhccc--------chhhHHHHhhCCeEEEEEEeccccCCCCCcccccchhhccccC-CCCCCC
Confidence            5799999999999999999887        889999 999999999999999999999655   999999987 332277


Q ss_pred             ceEEEEEEEeeCCCCc------------------------------EEeeecccCCCCCCCCeEEEcCCCCCCCCCcHHH
Q 042804          131 NYLYESKFNVPFDFGE------------------------------ITCNSWLQPKEENTPTRIFFANKSYLPSATPDGL  180 (251)
Q Consensus       131 ~~~y~~~F~vd~~fG~------------------------------F~CnSWV~~~~~~~~~RiFFsNk~YLPs~TP~gL  180 (251)
                      +++|+|+|+||++||+                              |+|||||||+++|+.+||||+||+|||+|||+||
T Consensus       153 ~~~~~~~f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~l  232 (918)
T PLN02305        153 IVEYAADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGI  232 (918)
T ss_pred             ceEEEEEEeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCCCCCceEecCCCcCcccCCHHH
Confidence            8899999999999999                              9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCccccccCCccccccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 042804          181 KRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSELGSV  251 (251)
Q Consensus       181 ~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYNDLG~PD~~~~~~RPvLGG~~~PYPRRcRTGR~pt~tD~~  251 (251)
                      ++|||+||++|||||+||||+|||||||||||||||||++++++||||||++|||||||||||+||+|||.
T Consensus       233 ~~~Re~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~  303 (918)
T PLN02305        233 KDLRREDLLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPL  303 (918)
T ss_pred             HHHHHHHHHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999669999999999999999983

>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1

Probab=100.00  E-value=5.5e-41  Score=335.39  Aligned_cols=74  Identities=69%  Similarity=1.297  Sum_probs=50.2

Q ss_pred             cHHHHHHHHHHHHhhcCCCccccccCCccccccccccCCCCCCCCCCCCcccCC-CCCCCCCCCCCCCCCCCCCC
Q 042804          177 PDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGG-KEYPYPRRCRTGRPRSELGS  250 (251)
Q Consensus       177 P~gL~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYNDLG~PD~~~~~~RPvLGG-~~~PYPRRcRTGR~pt~tD~  250 (251)
                      |+||++|||+||++|||||+||||+|||||||||||||||||++++++|||||| ++|||||||||||+|+++||
T Consensus         1 ~~~l~~~R~~eL~~lrG~g~gerk~~dRiYdYd~YnDLG~pd~~~~~~RpvlGgs~~~PYPRR~RTGr~~~~~Dp   75 (667)
T PF00305_consen    1 PAGLKKLREEELKNLRGDGTGERKEWDRIYDYDVYNDLGNPDKGPELARPVLGGSKEFPYPRRCRTGRPPTKTDP   75 (667)
T ss_dssp             SGGGHHHHHHHHHHHHTTS-S---TT-----EE-B-SSSBGGGTGCG----BSSSSSS----EE----SBESSCT
T ss_pred             ChHHHHHHHHHHHHhcCCCCCccccccceeeeecccCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCc
Confidence            899999999999999999999999999999999999999999999999999999 89999999999999999998

13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....

>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins

Probab=99.97  E-value=3.2e-32  Score=227.10  Aligned_cols=100  Identities=37%  Similarity=0.596  Sum_probs=91.0

Q ss_pred             ccceeEEeeeeeEEEEeeEEEEeecCCcccccccc-cccCCeeEEEEeeccccCCCCCce----eccCCcccccCCCCCC
Q 042804           56 NIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDES-FLFGKSFSLELVSTKLDHKTGSEK----TTKPSHAIRVGNDKEG  130 (251)
Q Consensus        56 ~ikg~vv~~~k~~l~~~~~~~v~~~~~~~~~lD~~-dllGk~v~LqLVSa~~d~~tg~gk----a~l~~w~~~~~~~~~~  130 (251)
                      ++||+|++|+++.++++++.         +.+|++ |++||+|+|||||+++||+||+||    ++|++|+++.    ++
T Consensus         2 ~vka~V~v~~k~~~~~~~~~---------~~~D~~~~llGk~v~lqLVSs~~d~~tg~~k~~~~~~l~~~~~~~----~~   68 (137)
T cd01751           2 KVKATVTVMKKNKLDLNDDG---------SGLDDLDDLLGRSLLLELVSSELDPKTGKGKKGKAAFLEGWGKSL----AG   68 (137)
T ss_pred             EEEEEEEEEEeecccccccc---------chhhhHHHhhCCeEEEEEEEeeecCCCCCcccccceeeecccccC----Cc
Confidence            58999999999988888754         468999 999999999999999999999655    9999998654    66


Q ss_pred             ceEEEEEEEeeCCCCc-------------------------------EEeeecccCCCCCCCCeEEEcC
Q 042804          131 NYLYESKFNVPFDFGE-------------------------------ITCNSWLQPKEENTPTRIFFAN  168 (251)
Q Consensus       131 ~~~y~~~F~vd~~fG~-------------------------------F~CnSWV~~~~~~~~~RiFFsN  168 (251)
                      +++|+++|+||++||+                               |+|||||||+++|+.+||||+|
T Consensus        69 e~~y~~~F~v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~~~~~~~RiFFsN  137 (137)
T cd01751          69 ESAYEAEFEVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPKKDYPDKRIFFPN  137 (137)
T ss_pred             ceEEEEEEEeecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccCCCCCCCCEEccC
Confidence            7899999999999999                               9999999999999999999998

Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.

>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain

Probab=97.31  E-value=0.00054  Score=52.87  Aligned_cols=43  Identities=33%  Similarity=0.274  Sum_probs=28.5

Q ss_pred             eeEEEEeeccccCCCCCc-eeccCCcccccCCCCCCceEEEEEEEeeCCCCc
Q 042804           96 SFSLELVSTKLDHKTGSE-KTTKPSHAIRVGNDKEGNYLYESKFNVPFDFGE  146 (251)
Q Consensus        96 ~v~LqLVSa~~d~~tg~g-ka~l~~w~~~~~~~~~~~~~y~~~F~vd~~fG~  146 (251)
                      +|.|+|++++.+  +|.. ...++.|.     . +....|+..|+++.++|+
T Consensus        20 ~V~l~L~g~~~~--s~~~~~~~~~~~~-----f-~~g~~~~f~v~~~~~lG~   63 (105)
T smart00308       20 SVSLSLVGAEGD--GKESKLDYLFKGI-----F-ARGSTYEFTFDVDEDFGE   63 (105)
T ss_pred             eEEEEEEeCCCC--CcceeccccCCcc-----c-cCCceEEEEEecccCCCC
Confidence            699999998865  3321 13444442     2 223478888999999998

>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1

Probab=96.85  E-value=0.0014  Score=50.31  Aligned_cols=20  Identities=40%  Similarity=1.129  Sum_probs=19.6

Q ss_pred             EEeeecccCCCCCCCCeEEE
Q 042804          147 ITCNSWLQPKEENTPTRIFF  166 (251)
Q Consensus       147 F~CnSWV~~~~~~~~~RiFF  166 (251)
                      |+||.||....+++.+||||
T Consensus        94 F~~~~Wl~~~~~~~~~rvf~  113 (113)
T PF01477_consen   94 FPCNRWLDPDKDYKTERVFF  113 (113)
T ss_dssp             EEEEEEESTTEGCSSEEEEE
T ss_pred             EEcCCEECCCCCCCCccEEC
Confidence            99999999999999999998

13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....

>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain

Probab=94.21  E-value=0.052  Score=42.44  Aligned_cols=20  Identities=20%  Similarity=0.275  Sum_probs=18.5

Q ss_pred             EEeeecccCCCCCCCCeEEE
Q 042804          147 ITCNSWLQPKEENTPTRIFF  166 (251)
Q Consensus       147 F~CnSWV~~~~~~~~~RiFF  166 (251)
                      |.||+||.....++.+|+|.
T Consensus        97 F~~~~Wl~~~~~~~~~r~~~  116 (116)
T cd00113          97 FPVNRWVLGGKWYTSVRSLK  116 (116)
T ss_pred             EEeCCCcccCCCCCceeecC
Confidence            99999999999999999974

It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	251
2iuj_A	853	Crystal Structure Of Soybean Lipoxygenase-B Length		2e-28
3pzw_A	839	Soybean Lipoxygenase-1 - Re-Refinement Length = 839		1e-27
3bnd_A	839	Lipoxygenase-1 (Soybean), I553v Mutant Length = 839		1e-27
3bnb_A	839	Lipoxygenase-1 (Soybean) I553l Mutant Length = 839		1e-27
3bnc_A	839	Lipoxygenase-1 (Soybean) I553g Mutant Length = 839		1e-27
3bne_A	839	Lipoxygenase-1 (Soybean) I553a Mutant Length = 839		1e-27
1fgm_A	839	Lipoxygenase-1 (Soybean) At 100k, N694h Mutant Leng		1e-27
1y4k_A	839	Lipoxygenase-1 (Soybean) At 100k, N694g Mutant Leng		1e-27
1fgr_A	839	Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant Leng		1e-27
1fgq_A	839	Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant Leng		1e-27
1fgo_A	839	Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant Leng		1e-27
1fgt_A	839	Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant Leng		1e-27
2sbl_B	839	The Three-Dimensional Structure Of An Arachidonic A		1e-27
1rov_A	857	Lipoxygenase-3 Treated With Cumene Hydroperoxide Le		3e-26
1ik3_A	857	Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydrope		3e-26
2iuk_A	864	Crystal Structure Of Soybean Lipoxygenase-D Length		1e-25

>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B Length = 853

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 70/98 (71%)
Query: 149 CNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDY 208
           CNSW+   +     RIFFAN +YLPS TP  L + R +EL++++GDG G R+  DRIYDY
Sbjct: 141 CNSWVYNSKHYKTDRIFFANNTYLPSETPAPLVKYREEELKNVRGDGTGERKEWDRIYDY 200
Query: 209 DVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRS 246
           DVYNDLG+P+K  K  RPVLGG   PYPRR RTGR ++
Sbjct: 201 DVYNDLGDPDKGEKYARPVLGGSALPYPRRGRTGRGKT 238

>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement Length = 839

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
            CNSW+   +     RIFFAN +Y+PS TP  L   R +EL+ L+G+G G R+  DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
           YDVYNDLGNP+K  KL RPVLGG   +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222

>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant Length = 839

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
            CNSW+   +     RIFFAN +Y+PS TP  L   R +EL+ L+G+G G R+  DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
           YDVYNDLGNP+K  KL RPVLGG   +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222

>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant Length = 839

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
            CNSW+   +     RIFFAN +Y+PS TP  L   R +EL+ L+G+G G R+  DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
           YDVYNDLGNP+K  KL RPVLGG   +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222

>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant Length = 839

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
            CNSW+   +     RIFFAN +Y+PS TP  L   R +EL+ L+G+G G R+  DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
           YDVYNDLGNP+K  KL RPVLGG   +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222

>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant Length = 839

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
            CNSW+   +     RIFFAN +Y+PS TP  L   R +EL+ L+G+G G R+  DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
           YDVYNDLGNP+K  KL RPVLGG   +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222

>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant Length = 839

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
            CNSW+   +     RIFFAN +Y+PS TP  L   R +EL+ L+G+G G R+  DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
           YDVYNDLGNP+K  KL RPVLGG   +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222

>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant Length = 839

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
            CNSW+   +     RIFFAN +Y+PS TP  L   R +EL+ L+G+G G R+  DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
           YDVYNDLGNP+K  KL RPVLGG   +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222

>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant Length = 839

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
            CNSW+   +     RIFFAN +Y+PS TP  L   R +EL+ L+G+G G R+  DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
           YDVYNDLGNP+K  KL RPVLGG   +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222

>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant Length = 839

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
            CNSW+   +     RIFFAN +Y+PS TP  L   R +EL+ L+G+G G R+  DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
           YDVYNDLGNP+K  KL RPVLGG   +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222

>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant Length = 839

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
            CNSW+   +     RIFFAN +Y+PS TP  L   R +EL+ L+G+G G R+  DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
           YDVYNDLGNP+K  KL RPVLGG   +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222

>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant Length = 839

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
            CNSW+   +     RIFFAN +Y+PS TP  L   R +EL+ L+G+G G R+  DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
           YDVYNDLGNP+K  KL RPVLGG   +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222

>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15- Lipoxygenase Length = 839

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
            CNSW+   +     RIFFAN +Y+PS TP  L   R +EL+ L+G+G G R+  DRIYD
Sbjct: 126 VCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRIYD 185
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
           YDVYNDLGNP+K  KL RPVLGG   +PYPRR RTGR
Sbjct: 186 YDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGR 222

>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide Length = 857

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
            CNSW+   +     RIFFAN++YLPS TP  L + R +EL +L+GDG G R+  +RIYD
Sbjct: 144 VCNSWIYNAKLFKSDRIFFANQTYLPSETPAPLVKYREEELHNLRGDGTGERKEWERIYD 203
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
           YDVYNDLG+P+K     RPVLGG + +PYPRR RTGR
Sbjct: 204 YDVYNDLGDPDKGENHARPVLGGNDTFPYPRRGRTGR 240

>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy- 9(Z),11(E)-Octadecadienoic Acid Length = 857

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 148 TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYD 207
            CNSW+   +     RIFFAN++YLPS TP  L + R +EL +L+GDG G R+  +RIYD
Sbjct: 144 VCNSWIYNAKLFKSDRIFFANQTYLPSETPAPLVKYREEELHNLRGDGTGERKEWERIYD 203
Query: 208 YDVYNDLGNPEKDPKLKRPVLGGKE-YPYPRRCRTGR 243
           YDVYNDLG+P+K     RPVLGG + +PYPRR RTGR
Sbjct: 204 YDVYNDLGDPDKGENHARPVLGGNDTFPYPRRGRTGR 240

>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D Length = 864

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 68/103 (66%), Gaps = 5/103 (4%)
Query: 146 EITCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRI 205
           E  CNSW+         RIFF N +YLPSATP  L + R++E   L+GDG G R+  DRI
Sbjct: 150 EFVCNSWVYNFRSYKKNRIFFVNDTYLPSATPAPLLKYRKEEFEVLRGDGTGKRKDFDRI 209
Query: 206 YDYDVYNDLGNPE-KDPKLKRPVLGGKE-YPYPRRCRTGRPRS 246
           YDYDVYNDLGNP+  DP   RP+LGG   YPYP R RTGR R+
Sbjct: 210 YDYDVYNDLGNPDGGDP---RPILGGCSIYPYPLRVRTGRERT 249

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
1f8n_A	839	Lipoxygenase-1; dioxygenase, metalloprotein, fatty	6e-59
2iuj_A	853	Lipoxygenase L-5; dioxygenase, metal-binding, oxid	9e-53
2iuk_A	864	SEED lipoxygenase; iron, dioxygenase, metal-bindin	4e-52

>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ... Length = 839

 Score =  198 bits (505), Expect = 6e-59
 Identities = 74/227 (32%), Positives = 96/227 (42%), Gaps = 44/227 (19%)

Query: 57  IKAIATSKRTLIDNVTAVITVKSNSSLKDEIDESFLFGKSFSLELVSTKLDHKTGSEKTT 116
           IK                + V  + S  D ++     G+S SL+L+S       G  K  
Sbjct: 8   IKGTVVLMPKN------ELEVNPDGSAVDNLNA--FLGRSVSLQLISATKADAHGKGKVG 59

Query: 117 KPS----HAIRVGNDKEGNYLYESKFNVPFDFGEI------------------------- 147
           K +        +     G   +   F      G                           
Sbjct: 60  KDTFLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISN 119

Query: 148 ------TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQL 201
                  CNSW+   +     RIFFAN +Y+PS TP  L   R +EL+ L+G+G G R+ 
Sbjct: 120 QGTIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKE 179

Query: 202 SDRIYDYDVYNDLGNPEKDPKLKRPVLGG-KEYPYPRRCRTGRPRSE 247
            DRIYDYDVYNDLGNP+K  KL RPVLGG   +PYPRR RTGR  + 
Sbjct: 180 YDRIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTV 226

>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max} Length = 853

 Score =  182 bits (461), Expect = 9e-53
 Identities = 77/231 (33%), Positives = 107/231 (46%), Gaps = 38/231 (16%)

Query: 55  NNIKAIATSKRTLIDNVTAVITVKS-----NSSLKDEIDESFLFGKSFSLELVS-TKLDH 108
             IK      +  + ++ ++ +V          L   +D       S S++L+S TK D 
Sbjct: 9   QKIKGTMVVMQKNVLDINSITSVDGIVGTGLDFLGSALDTVTFLASSISIQLISATKADG 68

Query: 109 KTG-SEKTTKPSHAIRVGNDKEGNYLYESKFNVPFDFGEI-------------------- 147
             G   K T     I +         Y+++F+   DFG                      
Sbjct: 69  GKGKVGKATNLRGKITLPTIGAKEEAYDAQFDWDSDFGIPGAFYIKNYMQNEFYLKSLIL 128

Query: 148 -----------TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGR 196
                       CNSW+   +     RIFFAN +YLPS TP  L + R +EL++++GDG 
Sbjct: 129 EDIPNHGTIHFICNSWVYNSKHYKTDRIFFANNTYLPSETPAPLVKYREEELKNVRGDGT 188

Query: 197 GVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSE 247
           G R+  DRIYDYDVYNDLG+P+K  K  RPVLGG   PYPRR RTGR ++ 
Sbjct: 189 GERKEWDRIYDYDVYNDLGDPDKGEKYARPVLGGSALPYPRRGRTGRGKTR 239

>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max} Length = 864

 Score =  180 bits (456), Expect = 4e-52
 Identities = 71/230 (30%), Positives = 92/230 (40%), Gaps = 40/230 (17%)

Query: 54  VNNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDESFLFGKSFSLELVSTKLDHKTGSE 113
            N I +I                V     + D        G++ S++L+S      +G+ 
Sbjct: 25  FNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATS--FLGRNISMQLISATQTDGSGNG 82

Query: 114 KTTKPS----HAIRVGNDKEGNYLYESKFNVPFDFGEI---------------------- 147
           K  K      H   +         +   F     FG                        
Sbjct: 83  KVGKEVYLEKHLPTLPTLGARQDAFSIFFEWDASFGIPGAFYIKNFMTDEFFLVSVKLED 142

Query: 148 ---------TCNSWLQPKEENTPTRIFFANKSYLPSATPDGLKRLRRQELRHLQGDGRGV 198
                     CNSW+         RIFF N +YLPSATP  L + R++E   L+GDG G 
Sbjct: 143 IPNHGTIEFVCNSWVYNFRSYKKNRIFFVNDTYLPSATPAPLLKYRKEEFEVLRGDGTGK 202

Query: 199 RQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGG-KEYPYPRRCRTGRPRSE 247
           R+  DRIYDYDVYNDLGNP+      RP+LGG   YPYP R RTGR R+ 
Sbjct: 203 RKDFDRIYDYDVYNDLGNPDGGD--PRPILGGCSIYPYPLRVRTGRERTR 250

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
2iuk_A	864	SEED lipoxygenase; iron, dioxygenase, metal-bindin	100.0
1f8n_A	839	Lipoxygenase-1; dioxygenase, metalloprotein, fatty	100.0
2iuj_A	853	Lipoxygenase L-5; dioxygenase, metal-binding, oxid	100.0
1lox_A	662	15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot	99.66
3fg1_A	696	Allene oxide synthase-lipoxygenase protein; arichi	82.55

>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max}

Probab=100.00  E-value=7.1e-77  Score=602.61  Aligned_cols=194  Identities=36%  Similarity=0.622  Sum_probs=175.3

Q ss_pred             cccceeEEeeeeeEEEEeeEEEEeecC--------------Ccccccccc-cccCCeeEEEEeeccccCCCCCce----e
Q 042804           55 NNIKAIATSKRTLIDNVTAVITVKSNS--------------SLKDEIDES-FLFGKSFSLELVSTKLDHKTGSEK----T  115 (251)
Q Consensus        55 ~~ikg~vv~~~k~~l~~~~~~~v~~~~--------------~~~~~lD~~-dllGk~v~LqLVSa~~d~~tg~gk----a  115 (251)
                      +++||+|++|++++++++++.++++..              .+.+.+|++ |++|++|+|||||+++||+||+||    +
T Consensus         9 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqlvs~~~~~~~~~~k~~~~~   88 (864)
T 2iuk_A            9 QKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNISMQLISATQTDGSGNGKVGKEV   88 (864)
T ss_dssp             CCEEEEEEEEEGGGSCHHHHTTC-----------------------CCSGGGSCSTTEEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CEEEEEEEEEecccccccccccccccccccccccccccccccccchhhhHHHhccCeEEEEEEecccCCCCCCCcCCCcc
Confidence            679999999999999988766222111              224789999 999999999999999999999885    9


Q ss_pred             ccCCcccccCCCCCCceEEEEEEEeeCCCCc-------------------------------EEeeecccCCCCCCCCeE
Q 042804          116 TKPSHAIRVGNDKEGNYLYESKFNVPFDFGE-------------------------------ITCNSWLQPKEENTPTRI  164 (251)
Q Consensus       116 ~l~~w~~~~~~~~~~~~~y~~~F~vd~~fG~-------------------------------F~CnSWV~~~~~~~~~Ri  164 (251)
                      +|++|+.+.....+++++|+|+|+||++||+                               |+|||||||+++|+.+||
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~fg~pgA~~v~n~~~~e~~l~~~~l~~~~~~~~~~f~cnswv~~~~~~~~~Ri  168 (864)
T 2iuk_A           89 YLEKHLPTLPTLGARQDAFSIFFEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRI  168 (864)
T ss_dssp             ECCEEECSCSSCCTTCEEEEEEECCCSTTCCEEEEEEEECSSSCEEEEEEEEECCSSSCCEEEEEEEEECBGGGSSSCEE
T ss_pred             cccccccCCCcCCCCcEEEEEEEEeeccCCCcceEEEEeCCCCceEEEEEEEecCCCCCcEEEecCccccCCCCCCCCce
Confidence            9999995544467889999999999999999                               999999999999999999


Q ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHhhcCCCccccccCCccccccccccCCCCCCCCCCCCcccCC-CCCCCCCCCCCCC
Q 042804          165 FFANKSYLPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGG-KEYPYPRRCRTGR  243 (251)
Q Consensus       165 FFsNk~YLPs~TP~gL~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYNDLG~PD~~~~~~RPvLGG-~~~PYPRRcRTGR  243 (251)
                      ||+||+|||+|||+||++|||+||++|||||+||||+|||||||||||||||||++++  |||||| ++|||||||||||
T Consensus       169 fF~n~~ylp~~tp~~l~~~R~~el~~lrg~g~g~rk~~driydyd~yndlg~pd~~~~--rpvlggs~~~pyPrR~rtgr  246 (864)
T 2iuk_A          169 FFVNDTYLPSATPAPLLKYRKEEFEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDP--RPILGGCSIYPYPLRVRTGR  246 (864)
T ss_dssp             EEBSCCCCTTTSCGGGHHHHHHHHHHHHCCSCSCCCTTCCCCCEECBCCSCBGGGTBC--CCCBSSSSSSCCCCEECCCC
T ss_pred             eccCCCcCcccCcHHHHHHHHHHHHHhcCCCCCcccccccchhhhhhhcCCCcccCCC--CcccCCCCCCCCCccccCCC
Confidence            9999999999999999999999999999999999999999999999999999999988  999999 9999999999999


Q ss_pred             CCCCCCC
Q 042804          244 PRSELGS  250 (251)
Q Consensus       244 ~pt~tD~  250 (251)
                      +||+|||
T Consensus       247 ~~~~~dp  253 (864)
T 2iuk_A          247 ERTRTDP  253 (864)
T ss_dssp             CBCSSCT
T ss_pred             CCCCCCC
Confidence            9999998

>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ...

Probab=100.00  E-value=1.2e-74  Score=585.54  Aligned_cols=187  Identities=39%  Similarity=0.630  Sum_probs=168.8

Q ss_pred             cccceeEEeeeeeEEEEeeEEEEeecCCcccccccc-cccCCeeEEEEeeccccCCCCCce----eccCCcccccCCCCC
Q 042804           55 NNIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDES-FLFGKSFSLELVSTKLDHKTGSEK----TTKPSHAIRVGNDKE  129 (251)
Q Consensus        55 ~~ikg~vv~~~k~~l~~~~~~~v~~~~~~~~~lD~~-dllGk~v~LqLVSa~~d~~tg~gk----a~l~~w~~~~~~~~~  129 (251)
                      +++||+|++|++++++++ +.+        +.+|++ |++|++|+|||||+++||+||+||    ++|++|+.+.....+
T Consensus         6 ~~~~~~v~~~~~~~l~~~-~~~--------~~~d~~~~~~g~~~~l~lvs~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~   76 (839)
T 1f8n_A            6 HKIKGTVVLMPKNELEVN-PDG--------SAVDNLNAFLGRSVSLQLISATKADAHGKGKVGKDTFLEGINTSLPTLGA   76 (839)
T ss_dssp             CEEEEEEEEEECC---------------------CGGGGTTTTEEEEEEEEEEECTTSSEEECCCEECCEEECCCSCCCT
T ss_pred             cEEEEEEEEEeccccccc-ccc--------cchhhhhhhccCeEEEEEEEcccCCCCCCCcCCCcccccccccCCCcCCC
Confidence            679999999999999999 666        889999 999999999999999999999885    999999955444668


Q ss_pred             CceEEEEEEEeeCCCCc-------------------------------EEeeecccCCCCCCCCeEEEcCCCCCCCCCcH
Q 042804          130 GNYLYESKFNVPFDFGE-------------------------------ITCNSWLQPKEENTPTRIFFANKSYLPSATPD  178 (251)
Q Consensus       130 ~~~~y~~~F~vd~~fG~-------------------------------F~CnSWV~~~~~~~~~RiFFsNk~YLPs~TP~  178 (251)
                      ++++|+|+|+||++||+                               |+|||||||+++|+.+||||+||+|||++||+
T Consensus        77 ~~~~~~~~f~~~~~fg~pga~~v~n~~~~e~~l~~~~l~~~~~~~~~~f~cnswv~~~~~~~~~riff~n~~ylp~~tp~  156 (839)
T 1f8n_A           77 GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPA  156 (839)
T ss_dssp             TCEEEEEEEECCGGGCCEEEEEEEECSSSCEEEEEEEECC----CCEEEEEEEEECBGGGCSSCEEEECSCCCCGGGSCG
T ss_pred             CceEEEEEEEeccccCCceeEEEEeCCCCceEEEEEEEecCCCCCcEEEecccccCCCCCCCCCcEeccCccccCCCCch
Confidence            89999999999999999                               99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCccccccCCccccccccccCCCCCCCCCCCCcccCC-CCCCCCCCCCCCCCCCCCCC
Q 042804          179 GLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGG-KEYPYPRRCRTGRPRSELGS  250 (251)
Q Consensus       179 gL~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYNDLG~PD~~~~~~RPvLGG-~~~PYPRRcRTGR~pt~tD~  250 (251)
                      ||++|||+||++|||||+||||+|||||||||||||||||++++++|||||| ++|||||||||||+|++|||
T Consensus       157 ~l~~~r~~el~~lrG~g~G~rk~~driYdyd~ynDlg~pd~~~~~~rpvlggs~~~Pyprr~rtgr~~~~~d~  229 (839)
T 1f8n_A          157 PLVSYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDP  229 (839)
T ss_dssp             GGHHHHHHHHHHHHCCSCSCCCTTCCCCCEECBCSSCCTTTCGGGCCCCBSSSSSSCCCCEECCCCCBCSSCT
T ss_pred             HHHhhhHHHHHHhhcCCccccccccceeehhhhccccCCCcCccccccccCCCCCCCCCCccccCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999 89999999999999999998

>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max}

Probab=100.00  E-value=3.3e-70  Score=553.90  Aligned_cols=194  Identities=38%  Similarity=0.662  Sum_probs=174.7

Q ss_pred             cccceeEEeeeeeEEEEeeEEEEeecC-----CcccccccccccCCeeEEEEeeccccCCCCCce----eccCCcccccC
Q 042804           55 NNIKAIATSKRTLIDNVTAVITVKSNS-----SLKDEIDESFLFGKSFSLELVSTKLDHKTGSEK----TTKPSHAIRVG  125 (251)
Q Consensus        55 ~~ikg~vv~~~k~~l~~~~~~~v~~~~-----~~~~~lD~~dllGk~v~LqLVSa~~d~~tg~gk----a~l~~w~~~~~  125 (251)
                      +++||+|++|++++++++++.+|+-.+     ...+++|++.++|++|+|||||++++ +||+||    ++|++|++ ..
T Consensus         9 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~v~lqlvs~~~~-~~~~~~~~~~~~~~~~~~-~~   86 (853)
T 2iuj_A            9 QKIKGTMVVMQKNVLDINSITSVDGIVGTGLDFLGSALDTVTFLASSISIQLISATKA-DGGKGKVGKATNLRGKIT-LP   86 (853)
T ss_dssp             CEEEEEEEEEEGGGSSSSCCCCC--------------CCCCCCCSSSEEEEEEEEEEE-SSSSEEEEEEEECCCCCC-CS
T ss_pred             cEEEEEEEEEeccccccccccccccccccccccccccccceeecCCeEEEEEEEeeeC-CCCCcccCCccccccccC-CC
Confidence            679999999999999999843321111     12277888899999999999999999 999885    99999995 33


Q ss_pred             CCCCCceEEEEEEEeeCCCCc-------------------------------EEeeecccCCCCCCCCeEEEcCCCCCCC
Q 042804          126 NDKEGNYLYESKFNVPFDFGE-------------------------------ITCNSWLQPKEENTPTRIFFANKSYLPS  174 (251)
Q Consensus       126 ~~~~~~~~y~~~F~vd~~fG~-------------------------------F~CnSWV~~~~~~~~~RiFFsNk~YLPs  174 (251)
                      ...+++++|+|+|+||++||+                               |+||||||++++|+.+||||+|++|||+
T Consensus        87 ~~~~~~~~~~v~f~~~~~~G~~gav~v~n~~~~e~fl~~i~l~~~p~~g~~~F~c~sWv~~~~~~~~~riff~n~~ylp~  166 (853)
T 2iuj_A           87 TIGAKEEAYDAQFDWDSDFGIPGAFYIKNYMQNEFYLKSLILEDIPNHGTIHFICNSWVYNSKHYKTDRIFFANNTYLPS  166 (853)
T ss_dssp             SCCTTEEEEEEEEECCSSSCCEEEEEEEECSSSCEEEEEEEECCCTTSCCEEEEEEEEECBTTSCSSCEEEECSCCCCGG
T ss_pred             CCCCCceEEEEEeeccccCCCceEEEEEecCCccceEeEEEEeecCCCCcEEEEecccccCCCCCCCCeEEEeCCccCcc
Confidence            456889999999999999999                               9999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHhhcCCCccccccCCccccccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 042804          175 ATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGGKEYPYPRRCRTGRPRSELGS  250 (251)
Q Consensus       175 ~TP~gL~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYNDLG~PD~~~~~~RPvLGG~~~PYPRRcRTGR~pt~tD~  250 (251)
                      |||++|++|||+||++|||||+||||+|||||||||||||||||++++++||||||.+|||||||||||+||++||
T Consensus       167 ~tp~~l~~~R~~EL~~lrg~g~g~rk~~driYdy~~yndlg~pd~~~~~~rpvlgGs~~Pyprr~rtgr~~~~~d~  242 (853)
T 2iuj_A          167 ETPAPLVKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLGDPDKGEKYARPVLGGSALPYPRRGRTGRGKTRKDP  242 (853)
T ss_dssp             GSCTTTHHHHHHHHHHHHCCSCSCCCTTCCCCCEECBCCSCCGGGCTTSCCCCBSSSSSCCCCEECCCCCBCSSCT
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCccccccceeeeccccccCCCCccCccccCcccCCCCCCCCccccCCCCCccCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999997

>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A*

Probab=99.66  E-value=3.7e-17  Score=162.91  Aligned_cols=51  Identities=14%  Similarity=0.344  Sum_probs=49.6

Q ss_pred             EEeeecccCCCCCCCCeEEEcC-CCCCCCC-CcHHHHHHHHHHHHhhcCCCccccccCCcccccccccc
Q 042804          147 ITCNSWLQPKEENTPTRIFFAN-KSYLPSA-TPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYND  213 (251)
Q Consensus       147 F~CnSWV~~~~~~~~~RiFFsN-k~YLPs~-TP~gL~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYND  213 (251)
                      |+|||||++     .+||||+| ++|||++ ||++|+++||+||+++           |||||||+|||
T Consensus        94 F~Cn~WL~~-----~~rvff~~G~~~Lp~~D~~~~l~~~R~~eL~~~-----------~~~Y~~~~y~d  146 (662)
T 1lox_A           94 FPCYRWVVG-----DGVQSLPVGTGCTTVGDPQGLFQKHREQELEER-----------RKLYQWGSWKE  146 (662)
T ss_dssp             EEEEEEECS-----SCCEEEECTTCCCSTTCTTCTTHHHHHHHHHHH-----------HHHSCEECSST
T ss_pred             EEeceEecC-----CCEEEEecCceeeecccCChhhhhhhHHHHHhh-----------hcEEeecCcCC
Confidence            999999997     68999999 9999999 9999999999999999           89999999999

>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A

Probab=82.55  E-value=0.96  Score=45.69  Aligned_cols=48  Identities=19%  Similarity=0.405  Sum_probs=38.1

Q ss_pred             EEeeecccCCCCCCCCeEEEc-CCCCCCCCCcH-HHHHHHHHHHHhhcCCCccccccCCccccccccc
Q 042804          147 ITCNSWLQPKEENTPTRIFFA-NKSYLPSATPD-GLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYN  212 (251)
Q Consensus       147 F~CnSWV~~~~~~~~~RiFFs-Nk~YLPs~TP~-gL~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYN  212 (251)
                      |+||.|+.-.       +.+. -++.||.+-+. -|++.|++||++-|           ..|.++.|.
T Consensus       103 Fpc~rWL~~d-------l~lreG~a~l~~~d~~~~~~~~R~~el~~r~-----------~~y~w~~~~  152 (696)
T 3fg1_A          103 FPCFRWVIKD-------MVLFPGEATLPFNEVPAIVSEQRQKELEQRK-----------LTYQWDYVS  152 (696)
T ss_dssp             EEEEEEESSE-------EEECCSSCCCTTSCCCHHHHHHHHHHHHHHH-----------HHSCEECSS
T ss_pred             eEhhhhccCC-------eEecCcceecccccccHHHHHHHHHHHHHhh-----------heecCCCCC
Confidence            9999999842       5554 67899987664 47999999999887           567787775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d3bnea1	690	a.119.1.1 (A:150-839) Lipoxigenase, C-terminal dom	4e-45
d3bnea2	143	b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Gl	7e-16

>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Length = 690

class: All alpha proteins
fold: Lipoxigenase
superfamily: Lipoxigenase
family: Plant lipoxigenases
domain: Lipoxigenase, C-terminal domain
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

 Score =  158 bits (400), Expect = 4e-45
 Identities = 46/77 (59%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 172 LPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGG- 230
           +PS TP  L   R +EL+ L+G+G G R+  DRIYDYDVYNDLGNP+K  KL RPVLGG 
Sbjct: 1   VPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGS 60

Query: 231 KEYPYPRRCRTGRPRSE 247
             +PYPRR RTGR  + 
Sbjct: 61  STFPYPRRGRTGRGPTV 77

>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Length = 143

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Lipoxigenase N-terminal domain
domain: Plant lipoxigenase
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

 Score = 70.2 bits (172), Expect = 7e-16
 Identities = 26/133 (19%), Positives = 39/133 (29%), Gaps = 37/133 (27%)

Query: 74  VITVKSNSSLKDEIDESFLFGKSFSLELVSTKLDHKTGSEKTTKPSH----AIRVGNDKE 129
            + V  + S  D ++     G+S SL+L+S       G  K  K +        +     
Sbjct: 13  ELEVNPDGSAVDNLNA--FLGRSVSLQLISATKADAHGKGKVGKDTFLEGINTSLPTLGA 70

Query: 130 GNYLYESKFNVPFDFGEI-------------------------------TCNSWLQPKEE 158
           G   +   F      G                                  CNSW+   + 
Sbjct: 71  GESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKL 130

Query: 159 NTPTRIFFANKSY 171
               RIFFAN +Y
Sbjct: 131 YKSVRIFFANHTY 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d3bnea1	690	Lipoxigenase, C-terminal domain {Soybean (Glycine	100.0
d3bnea2	143	Plant lipoxigenase {Soybean (Glycine max), isozyme	100.0

>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]}

class: All alpha proteins
fold: Lipoxigenase
superfamily: Lipoxigenase
family: Plant lipoxigenases
domain: Lipoxigenase, C-terminal domain
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

Probab=100.00  E-value=6.4e-45  Score=360.87  Aligned_cols=80  Identities=58%  Similarity=1.000  Sum_probs=78.6

Q ss_pred             CCCCCcHHHHHHHHHHHHhhcCCCccccccCCccccccccccCCCCCCCCCCCCcccCC-CCCCCCCCCCCCCCCCCCCC
Q 042804          172 LPSATPDGLKRLRRQELRHLQGDGRGVRQLSDRIYDYDVYNDLGNPEKDPKLKRPVLGG-KEYPYPRRCRTGRPRSELGS  250 (251)
Q Consensus       172 LPs~TP~gL~~lRe~EL~~LRGdG~GeRk~~DRIYDYdvYNDLG~PD~~~~~~RPvLGG-~~~PYPRRcRTGR~pt~tD~  250 (251)
                      ||+|||+||++|||+||++|||||+||||+|||||||||||||||||++++++|||||| ++|||||||||||+||+|||
T Consensus         1 lp~~tp~~l~~~r~~el~~lrg~g~g~~~~~driydy~~yndlg~pd~~~~~~rp~lgg~~~~pyprr~rtgr~~~~~dp   80 (690)
T d3bnea1           1 VPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDP   80 (690)
T ss_dssp             CGGGSCGGGHHHHHHHHHHHHCCSCSCCCTTCCCCCEECBCSSCCTTTCGGGCCCCBSSSSSSCCCCEECCCCCBCSSCT
T ss_pred             CCccccHHHHHHHHHHHHHhCCCCCCCCCcccccccccccccCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999 78999999999999999998


Q ss_pred             C
Q 042804          251 V  251 (251)
Q Consensus       251 ~  251 (251)
                      .
T Consensus        81 ~   81 (690)
T d3bnea1          81 N   81 (690)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]}

class: All beta proteins
fold: Lipase/lipooxygenase domain (PLAT/LH2 domain)
superfamily: Lipase/lipooxygenase domain (PLAT/LH2 domain)
family: Lipoxigenase N-terminal domain
domain: Plant lipoxigenase
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

Probab=100.00  E-value=2.2e-38  Score=262.94  Aligned_cols=107  Identities=25%  Similarity=0.343  Sum_probs=92.8

Q ss_pred             ccceeEEeeeeeEEEEeeEEEEeecCCcccccccc-cccCCeeEEEEeeccccCCCCCce----eccCCcccccCCCCCC
Q 042804           56 NIKAIATSKRTLIDNVTAVITVKSNSSLKDEIDES-FLFGKSFSLELVSTKLDHKTGSEK----TTKPSHAIRVGNDKEG  130 (251)
Q Consensus        56 ~ikg~vv~~~k~~l~~~~~~~v~~~~~~~~~lD~~-dllGk~v~LqLVSa~~d~~tg~gk----a~l~~w~~~~~~~~~~  130 (251)
                      +|||+|++|+|++||+++..         +++|++ ||+||+|+|||||++++|++|+||    ++|++|.++.+.+.++
T Consensus         1 kikg~vvlmkk~~ld~~~~~---------~~lD~~~el~Gk~V~lqLVS~~~~d~~g~gk~~~~a~l~~~~~~~~~~~a~   71 (143)
T d3bnea2           1 KIKGTVVLMPKNELEVNPDG---------SAVDNLNAFLGRSVSLQLISATKADAHGKGKVGKDTFLEGINTSLPTLGAG   71 (143)
T ss_dssp             CEEEEEEEEETTC--------------------CGGGGSTTSEEEEEEEEEEECTTSCEEECCCEECCEEECCCSCCCTT
T ss_pred             CcEEEEEEEecccccccccc---------chhhhhhHhhCCcEEEEEEEeeccCCCCCcccccceEeccccccCCCCCCc
Confidence            58999999999999998743         679999 999999999999999999999877    9999999998888899


Q ss_pred             ceEEEEEEEeeCCCCc-------------------------------EEeeecccCCCCCCCCeEEEcCCCC
Q 042804          131 NYLYESKFNVPFDFGE-------------------------------ITCNSWLQPKEENTPTRIFFANKSY  171 (251)
Q Consensus       131 ~~~y~~~F~vd~~fG~-------------------------------F~CnSWV~~~~~~~~~RiFFsNk~Y  171 (251)
                      +++|+++|+||++||+                               |+|||||||+++|+.+||||+||+|
T Consensus        72 ~~~y~v~F~vd~~fG~PGAi~V~N~h~~EffL~sitle~~p~~g~vhF~CNSWVyp~~~~~~~RIFFsNk~Y  143 (143)
T d3bnea2          72 ESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHTY  143 (143)
T ss_dssp             CEEEEEEECCCGGGCCEEEEEEEECSSSCEEEEEEEECCC----CEEEEEEEEECBGGGCSSCEEEECSCCC
T ss_pred             cEEEEEEEEecccCCCccEEEEEecCCccEEEEEEEEecCCCCcCEEEeCCCcEeECCCCCCCCEEecCCCC
Confidence            9999999999999999                               9999999999999999999999999