Citrus Sinensis ID: 042813

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Protein Sequence
MAEQQPDPISEPRRRGAGKRATTAPSPEAEPMSAPAPAAPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRFVMANALQTSQQPQQPQHVALLHQQQQQPAYSNSSSASTNFINMSNLASNFDFAAETVLSCHSMEPLHELSRPAHDDEDDEEESQIPIMFTNDHHQMLHNHRRTN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccccccccccccccccHHHHccccccccccccccccccccHHHHccccccccccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEcccccccccHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccHccccccccccccHHHHHHcHHHcccccccccccccccc
Coil and Loop (DISEMBL)
maeqqpdpiseprrrgagkrattapspeaepmsapapaapcgackflRRKCvsgcifaphfgsdqGAARFAAVHKVFGasnvsklllhipvnrrqdAVVTISYEAQarlsdpvygCVSTILALQQQVASLQAELTMVQNQLLNSRFVMANAlqtsqqpqqpQHVALLHQqqqqpaysnsssastnfinmsnlasnfdfAAETVlschsmeplhelsrpahddeddeeesqipimftnDHHQMLHNHRRTN
Flexible Loop (DISEMBL)
maeqqpdpiseprrrgagkrattapspeaepmsapaPAAPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRFVMANALQTSQQPQQPQHVALLHQQQQQPAYSNSSSASTNFINMSNLASNFDFAAETVLSCHSMEPLHELSRPAHDDEDDEEESQIPIMFTNDHHQMLHNHRRTN
Low Complexity Region (SEG)
MAEQQPDPISEPrrrgagkrattapspeaepmsapapaapCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTIlalqqqvaslqaelTMVQNQLLNSRFVMANalqtsqqpqqpqhvallhqqqqqpaYSNSSSASTNFINMSNLASNFDFAAETVLSCHSMEPLHELSRPAHDDEDDEEESQIPIMFTNDHHQMLHNHRRTN
Disordered region (IsUnstruct)
****************************************CGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRFVMA*****************************************NLASNFDFAAETVLSC********************************************
Disordered Region (DISOPRED)
******************************************ACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLN************************************************LA*NFDF****************************************************
Disordered Region (DISEMBL)
**************************************APCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRFVMANAL******************************STNFINMSNLASNFDFAAETVLSCHSMEPLHELS************SQIPIMFTNDHHQMLHNHRRTN
Disordered Region (DISPRO)
*************************************AAPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRFVMANALQ*************************************NLASNFDFAAETVLSCHSMEPLHELSRPA*DDEDDEEESQIPIMFTNDHHQ*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEQQPDPISEPRRRGAGKRATTAPSPEAEPMSAPAPAAPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTxxxxxxxxxxxxxxxxxxxxxLLNSRFVMANALQTSQQPQQPQHVALLHQQQQQPAYSNSSSASTNFINMSNLASNFDFAAETVLSCHSMEPLHELSRPAHDDEDDEEESQIPIMFTNDHHQMLHNHRRTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	250	2.2.26 [Sep-21-2011]
Q9SRV3	273	LOB domain-containing pro	yes	no	0.888	0.813	0.588	3e-61
Q9SLB7	245	LOB domain-containing pro	no	no	0.48	0.489	0.65	2e-40
O22131	262	LOB domain-containing pro	no	no	0.396	0.377	0.767	7e-40
Q9M2J7	218	LOB domain-containing pro	no	no	0.404	0.463	0.693	9e-39
O81322	220	LOB domain-containing pro	no	no	0.416	0.472	0.692	1e-37
O81323	228	LOB domain-containing pro	no	no	0.396	0.434	0.737	1e-37
Q9SLB6	244	LOB domain-containing pro	no	no	0.42	0.430	0.609	7e-36
Q9SJW5	188	LOB domain-containing pro	no	no	0.412	0.547	0.621	2e-35
O22132	191	LOB domain-containing pro	no	no	0.46	0.602	0.616	1e-34
Q9LHS8	177	LOB domain-containing pro	no	no	0.56	0.790	0.458	2e-33

>sp|Q9SRV3|LBD20_ARATH LOB domain-containing protein 20 OS=Arabidopsis thaliana GN=LBD20 PE=2 SV=1

 Score =  234 bits (598), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 147/250 (58%), Positives = 169/250 (67%), Gaps = 28/250 (11%)

Query: 1   MAEQQPD-PISEPRRRG-AGKRATTAPSPEAEPMSAPAP----------AAPCGACKFLR 48
           MA+QQ     S+ RR+  AGKR T+  +P +   S              A+PCGACKFLR
Sbjct: 1   MADQQRGHNTSDSRRKSLAGKR-TSQQTPTSSLSSGGVSMAAATTGTGTASPCGACKFLR 59

Query: 49  RKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQAR 108
           RKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLL HIPVNRR DAVVTISYEAQAR
Sbjct: 60  RKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQAR 119

Query: 109 LSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRFVMANALQTSQQPQQPQHVALLH 168
           LSDPVYGCVSTILALQQQVASLQAEL++VQ+QL+NSR  MAN +Q     QQ Q      
Sbjct: 120 LSDPVYGCVSTILALQQQVASLQAELSVVQSQLINSRVAMANVMQQQTHHQQQQQQL--- 176

Query: 169 QQQQQPAYSNSSSASTNF---------INMSNLASNFDFAAETVLSCHSMEPL--HELSR 217
              QQP YSN+SSAST           +     A ++D  A T L  HS++P+  H+  R
Sbjct: 177 VVMQQPEYSNNSSASTTLAGAAMNSFTMTADAAAVSYDVMAPTNLE-HSLQPMPPHQQRR 235

Query: 218 PAHDDEDDEE 227
             +  ED+EE
Sbjct: 236 GDYQHEDEEE 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLB7|LBD16_ARATH LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=2 SV=1

 Score =  166 bits (419), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/120 (65%), Positives = 97/120 (80%)

Query: 38  AAPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDA 97
            +PCGACKFLRRKC S CIFAP+F S+QGAARFAA+HKVFGASNVSKLLL++P++ R +A
Sbjct: 13  GSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIHDRCEA 72

Query: 98  VVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRFVMANALQTSQQ 157
           VVTI+YEAQARL DPVYGCVS I ALQQQVA LQ+++  ++ Q+   +   A  L+ S +
Sbjct: 73  VVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTSAAGDLRHSSE 132

Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19.

Arabidopsis thaliana (taxid: 3702)

>sp|O22131|LBD18_ARATH LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=2 SV=2

 Score =  164 bits (414), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 76/99 (76%), Positives = 87/99 (87%)

Query: 43  ACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTIS 102
           ACKFLRRKCV GCIFAP+F S+QG+A FAAVHKVFGASNVSKLLLHIPV+RR DAVVTI 
Sbjct: 40  ACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVTIC 99

Query: 103 YEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQL 141
           YEAQAR+ DP+YGCV+ I ALQQQV +LQAE++ +Q  L
Sbjct: 100 YEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHL 138

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2J7|LBD29_ARATH LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1

 Score =  160 bits (405), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 70/101 (69%), Positives = 85/101 (84%)

Query: 40  PCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVV 99
           PCGACKFLRRKC  GC+FAP+F  +QGA+ FAA+HKVFGASN SKLL H+P++ R +A +
Sbjct: 11  PCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEAAI 70

Query: 100 TISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQ 140
           TISYEAQARL DP+YGCVS I ALQQQV +LQAEL +++ Q
Sbjct: 71  TISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQ 111

Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19.

Arabidopsis thaliana (taxid: 3702)

>sp|O81322|LBD31_ARATH LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2

 Score =  157 bits (396), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/104 (69%), Positives = 82/104 (78%)

Query: 38  AAPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDA 97
             PCGACKFLRRKCV+ C+FAP+F S +G + F AVHKVFGASN SKLL+ IP +RR DA
Sbjct: 9   GGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPASRRLDA 68

Query: 98  VVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQL 141
           VVT++YEA ARL DPVYGCV  I ALQ QV +LQAEL  VQ QL
Sbjct: 69  VVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQL 112

Arabidopsis thaliana (taxid: 3702)

>sp|O81323|LBD30_ARATH LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30 PE=2 SV=1

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/99 (73%), Positives = 86/99 (86%)

Query: 43  ACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTIS 102
           ACKFLRRKCV+GCIFAP+F S+QGAA FAAVHKVFGASNVSKLL H+P ++R DAVV+I 
Sbjct: 20  ACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVPEHKRPDAVVSIC 79

Query: 103 YEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQL 141
           +EAQARL DP+YGCVS I++LQQQV SLQ EL+ +Q  L
Sbjct: 80  FEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHL 118

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLB6|LBD17_ARATH LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17 PE=2 SV=1

 Score =  150 bits (379), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 83/105 (79%)

Query: 36  APAAPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQ 95
              +PCGACKFLRR+CV GC+FAP+F  +QGA+ FAA+H+VFGASN SKLL H+P+  R+
Sbjct: 3   GSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDRR 62

Query: 96  DAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQ 140
           +A  TI YEAQAR  DP+YGCVS I +LQQQV +LQ +L +++ Q
Sbjct: 63  EAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQ 107

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJW5|LBD14_ARATH LOB domain-containing protein 14 OS=Arabidopsis thaliana GN=LBD14 PE=2 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 84/103 (81%)

Query: 38  AAPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDA 97
            +PCG CKFLRRKCV GC+FAP+F  ++G++ FAA+HKVFGASN SKL+ H+P + R DA
Sbjct: 5   GSPCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDA 64

Query: 98  VVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQ 140
           V TISYEA +RL DP+YGCVS I +LQQQV SLQA++ +++ +
Sbjct: 65  VRTISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREE 107

Arabidopsis thaliana (taxid: 3702)

>sp|O22132|LBD19_ARATH LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/120 (61%), Positives = 90/120 (75%), Gaps = 5/120 (4%)

Query: 43  ACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTIS 102
           ACKFLRRKCV GC+FAP+F ++QG ARFAAVHKVFGASN SK+LL +P+++R DAVVT+ 
Sbjct: 19  ACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKMLLRLPLHKRLDAVVTLC 78

Query: 103 YEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLN-SRFVMANALQTSQQPQQP 161
           YEA AR+ DPVYG V  + +LQ QV +LQAEL  VQ +L    RF     LQ+ QQ Q P
Sbjct: 79  YEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQARLSTIQRF----PLQSPQQMQPP 134

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHS8|LBD33_ARATH LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1

 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/155 (45%), Positives = 98/155 (63%), Gaps = 15/155 (9%)

Query: 38  AAPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDA 97
            + CGACKFLRRKC   C+F+P+F  +Q ++ FAAVHKVFGASNVSK LLH+P ++R  A
Sbjct: 5   GSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQRNIA 64

Query: 98  VVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRFVMANALQTSQQ 157
            +TISYEA +R+ DPVYGCV+ I AL QQV +LQ E+  + +Q+ N  +   N  Q +  
Sbjct: 65  AITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQLNNI 124

Query: 158 PQQPQHVALLHQQQQQPAYSNSSSASTNFINMSNL 192
           P+    + +               A+TNF++ S L
Sbjct: 125 PEFVNQMTM---------------ATTNFVDESVL 144

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
255569462	240	LOB domain-containing protein, putative	0.932	0.970	0.702	7e-79
225439233	238	PREDICTED: LOB domain-containing protein	0.936	0.983	0.699	2e-78
296085914	258	unnamed protein product [Vitis vinifera]	0.908	0.879	0.686	1e-72
449438012	222	PREDICTED: LOB domain-containing protein	0.836	0.941	0.646	7e-70
356537260	239	PREDICTED: LOB domain-containing protein	0.868	0.907	0.622	1e-69
356498385	202	PREDICTED: LOB domain-containing protein	0.792	0.980	0.639	2e-64
297828846	281	LOB domain protein 20 [Arabidopsis lyrat	0.912	0.811	0.588	4e-60
356570390	239	PREDICTED: LOB domain-containing protein	0.876	0.916	0.595	1e-59
15228616	273	LOB domain-containing protein 20 [Arabid	0.888	0.813	0.588	2e-59
168012905	152	predicted protein [Physcomitrella patens	0.512	0.842	0.710	1e-47

>gi|255569462|ref|XP_002525698.1| LOB domain-containing protein, putative [Ricinus communis] gi|223534998|gb|EEF36681.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  299 bits (766), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 175/249 (70%), Positives = 199/249 (79%), Gaps = 16/249 (6%)

Query: 1   MAEQQPDPISEPRRRGAGKRATTAPSPEAEPMSAP----APAAPCGACKFLRRKCVSGCI 56
           MAE   D  S+ RR+G GKR++      AEP  AP    A AAPCGACKFLRRKC++GCI
Sbjct: 1   MAEPGRDASSDTRRKGIGKRSSVECQSVAEP--APQVTVAAAAPCGACKFLRRKCINGCI 58

Query: 57  FAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGC 116
           FAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRR +AVVTISYEAQARLSDPVYGC
Sbjct: 59  FAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRHEAVVTISYEAQARLSDPVYGC 118

Query: 117 VSTILALQQQVASLQAELTMVQNQLLNSRFVMANALQTS-QQPQQPQHVALLHQQQQQPA 175
           VSTILALQQQVASLQAELTMVQ QL+NSRF MAN LQ S QQ QQ QH+A+L     QPA
Sbjct: 119 VSTILALQQQVASLQAELTMVQTQLINSRFAMANVLQNSQQQQQQQQHIAML-----QPA 173

Query: 176 YSNSSSASTNFINMSNLASNFDFAAETVLSCHSMEPLHELSRPAHDDEDDEEESQIPIMF 235
           YSN+SSASTN INMS+  SNFD   +T  S  S++P+ +LSRP+ +DE+DEEESQIP +F
Sbjct: 174 YSNNSSASTNLINMSSFTSNFDLVTDTAPSSLSLDPI-QLSRPSQEDEEDEEESQIPSIF 232

Query: 236 TNDHHQMLH 244
            ++   +LH
Sbjct: 233 ADE---ILH 238

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439233|ref|XP_002271115.1| PREDICTED: LOB domain-containing protein 20 [Vitis vinifera]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 172/246 (69%), Positives = 198/246 (80%), Gaps = 12/246 (4%)

Query: 1   MAEQQPDPISEPRRRGAGKRAT--TAPSPEAEPMSAPAPAAPCGACKFLRRKCVSGCIFA 58
           MA+ Q D   E RR+G GKR T       EA  +++ +PAAPCGACKFLRRKCVSGCIFA
Sbjct: 1   MADPQGDGTLESRRKGVGKRPTGMVEDVVEAVAVTSLSPAAPCGACKFLRRKCVSGCIFA 60

Query: 59  PHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVS 118
           PHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRR DAVVTISYEAQARLSDPVYGCVS
Sbjct: 61  PHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLSDPVYGCVS 120

Query: 119 TILALQQQVASLQAELTMVQNQLLNSRFVMANALQTSQQPQQPQHVALLHQQQQQPAYSN 178
           TILALQQQVASLQAEL MVQ QL+NSRF +ANA Q SQQ QQ   +A+L     QPAYSN
Sbjct: 121 TILALQQQVASLQAELAMVQAQLINSRFAVANAFQNSQQ-QQQHQIAVL-----QPAYSN 174

Query: 179 SSSASTNFINMSNLASNFDFAAETVLSCHSMEPLHELSRPAHDDEDDEEESQIPIMFTND 238
           +S+AS N IN+ +  SNFD A+ET  S HS+EPL +LS+P+ D+++DEEESQ P+MF+N+
Sbjct: 175 NSTASNNLINVGSFTSNFDIASETAPSSHSLEPL-QLSQPSQDEDEDEEESQNPVMFSNE 233

Query: 239 HHQMLH 244
              +LH
Sbjct: 234 ---ILH 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085914|emb|CBI31238.3| unnamed protein product [Vitis vinifera]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 164/239 (68%), Positives = 189/239 (79%), Gaps = 12/239 (5%)

Query: 16  GAGKRAT--TAPSPEAEPMSAPAPAAPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAV 73
           G GKR T       EA  +++ +PAAPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAV
Sbjct: 8   GVGKRPTGMVEDVVEAVAVTSLSPAAPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAV 67

Query: 74  HKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAE 133
           HKVFGASNVSKLLLHIPVNRR DAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAE
Sbjct: 68  HKVFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAE 127

Query: 134 LTMVQNQLLNSRFVMANALQTSQQPQQPQHVALLHQQQQQPAYSNSSSASTNFINMSNLA 193
           L MVQ QL+NSRF +ANA Q SQQ QQ   +A+L     QPAYSN+S+AS N IN+ +  
Sbjct: 128 LAMVQAQLINSRFAVANAFQNSQQ-QQQHQIAVL-----QPAYSNNSTASNNLINVGSFT 181

Query: 194 SNFDFAAETVLSCHSMEPLHELSRPAHDDEDDEEESQIPIMF---TNDHHQMLHNHRRT 249
           SNFD A+ET  S HS+EPL +LS+P+ D+++DEEESQ P++      D+ ++L   R T
Sbjct: 182 SNFDIASETAPSSHSLEPL-QLSQPSQDEDEDEEESQNPVIVLSCIKDNSKILSLERIT 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438012|ref|XP_004136784.1| PREDICTED: LOB domain-containing protein 20-like [Cucumis sativus] gi|449494844|ref|XP_004159662.1| PREDICTED: LOB domain-containing protein 20-like [Cucumis sativus]

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 150/232 (64%), Positives = 170/232 (73%), Gaps = 23/232 (9%)

Query: 12  PRRRGAG-KRATTAPSPEAEPMSAPAPAAPCGACKFLRRKCVSGCIFAPHFGSDQGAARF 70
           PRR+  G KRA        +P SA    APCGACKFLRRKCV+GCIFAPHF SDQGAARF
Sbjct: 8   PRRKPLGNKRANR------DPDSATV-TAPCGACKFLRRKCVNGCIFAPHFASDQGAARF 60

Query: 71  AAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASL 130
           AAVHK+FGASNVSKLLLHIPV+RR DAVVTISYEAQARLSDPVYGCVST+LALQQQVASL
Sbjct: 61  AAVHKIFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASL 120

Query: 131 QAELTMVQNQLLNSRFVMANALQTSQQPQQPQHVALLHQQQQQPAYSNSSSAST-----N 185
           QAEL  VQ QL++SR   A A+Q SQ  Q    V +L     QPAYSN+SS S      N
Sbjct: 121 QAELAAVQAQLISSRLAFAAAVQNSQSSQ----VGVL-----QPAYSNNSSISASTSAPN 171

Query: 186 FINMSNLASNFDFAAETVLSCHSMEPLHELSRPAHDDEDDEEESQIPIMFTN 237
            IN+S+ ASN+D   ET  S H +EPLH   RP  D+E+DEE SQ+P +F +
Sbjct: 172 AINLSSFASNYDLPTETAPSSHHLEPLHFPHRPI-DEEEDEENSQLPAIFAD 222

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537260|ref|XP_003537147.1| PREDICTED: LOB domain-containing protein 20-like [Glycine max]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 140/225 (62%), Positives = 165/225 (73%), Gaps = 8/225 (3%)

Query: 13  RRRGAGKRATTAPSPEAEPMSAPAPAAPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAA 72
           RRRG   R   A   + E M   +PA PCGACKFLRR+C+ GCIFAPHFG+DQGAA+FAA
Sbjct: 18  RRRGIASRRAMAAQTQDEAMVESSPATPCGACKFLRRRCIEGCIFAPHFGNDQGAAKFAA 77

Query: 73  VHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQA 132
           VHKVFGASNVSKLL +I VNRR +AV TISYEAQARLSDPVYGCVSTILALQQQVA+LQA
Sbjct: 78  VHKVFGASNVSKLLSNISVNRRNEAVTTISYEAQARLSDPVYGCVSTILALQQQVATLQA 137

Query: 133 ELTMVQNQLLNSRFVMANALQTSQQPQQPQHVALLHQQQQQPAYSNSSSASTNFINMSNL 192
           EL M+Q QL+NSRF  A+ALQT+Q  Q   +   L     QPAYSN+S ASTN +N+S+ 
Sbjct: 138 ELAMLQTQLMNSRFAYASALQTTQLQQPNMNAGAL-----QPAYSNNSCASTNLLNLSSF 192

Query: 193 ASN--FDFAAETVLSCHSMEPLHELSRPAHDDEDDEEESQIPIMF 235
            +N  FD   +T  S  S+EPL +L+R     E+DEEES+    F
Sbjct: 193 NNNTGFDLEMDTAPSSSSLEPL-QLTRLPLCKEEDEEESKTQQAF 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498385|ref|XP_003518033.1| PREDICTED: LOB domain-containing protein 20-like [Glycine max]

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 131/205 (63%), Positives = 156/205 (76%), Gaps = 7/205 (3%)

Query: 32  MSAPAPAAPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPV 91
           M   +P  PCGACKFLRR+CV GCIFAPHFG+DQGAA+FAAVHKVFGASNVSKLL +IPV
Sbjct: 1   MVESSPTTPCGACKFLRRRCVEGCIFAPHFGTDQGAAKFAAVHKVFGASNVSKLLSNIPV 60

Query: 92  NRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRFVMANA 151
           NRR +A  TISYEAQARLSDPVYGCVSTILALQQQVA+LQAEL M+Q QL+NSRF  A+A
Sbjct: 61  NRRNEASTTISYEAQARLSDPVYGCVSTILALQQQVATLQAELAMLQTQLMNSRFAYASA 120

Query: 152 LQTSQQPQQPQHVALLHQQQQQPAYSNSSSASTNFINMSNLASNFDFAAETVLS-CHSME 210
           LQT+Q  QQP     ++    QPAYSN+S ASTN +N+S   +N  F  E   +   S+E
Sbjct: 121 LQTTQL-QQPN----MNTGALQPAYSNNSCASTNLLNLSTFNNNPSFVLEMDTAPSSSLE 175

Query: 211 PLHELSRPAHDDEDDEEESQIPIMF 235
           PL +L+R +   E+DEEE++    F
Sbjct: 176 PL-QLTRLSQCKEEDEEENKTQKAF 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828846|ref|XP_002882305.1| LOB domain protein 20 [Arabidopsis lyrata subsp. lyrata] gi|297328145|gb|EFH58564.1| LOB domain protein 20 [Arabidopsis lyrata subsp. lyrata]

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 150/255 (58%), Positives = 173/255 (67%), Gaps = 27/255 (10%)

Query: 1   MAEQQPDP-ISEPRRRG-AGKRATT-APSPE--------AEPMSAPAPAAPCGACKFLRR 49
           MA+QQ     S+ RR+  AGKR +   P+P         A   +    A+PCGACKFLRR
Sbjct: 1   MADQQRGHHTSDSRRKSLAGKRTSQQTPTPSLSSGGVAMAAATTGTGTASPCGACKFLRR 60

Query: 50  KCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARL 109
           KCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLL HIPVNRR DAVVTISYEAQARL
Sbjct: 61  KCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARL 120

Query: 110 SDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRFVMANALQTSQQPQQPQHVALLHQ 169
           SDPVYGCVSTILALQQQVASLQAEL++VQ+QL+NSR  MAN +Q     QQ Q      Q
Sbjct: 121 SDPVYGCVSTILALQQQVASLQAELSVVQSQLINSRVAMANVMQQQTHHQQQQQQTHHQQ 180

Query: 170 Q------QQQPAYSNSSSASTNF----INMSNLAS-----NFDFAAETVLSCHSMEPLHE 214
           Q       QQP YSN+SSAST      +N   +A+     ++D  A T L  HS++P+  
Sbjct: 181 QQQQLVVMQQPEYSNNSSASTTLAGAAMNSFTVAAEVAAVSYDVMAPTNLE-HSLQPMPP 239

Query: 215 LSRPAHDDEDDEEES 229
             +   D  +DEEES
Sbjct: 240 HQQRRGDQHEDEEES 254

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570390|ref|XP_003553372.1| PREDICTED: LOB domain-containing protein 20-like [Glycine max]

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 137/230 (59%), Positives = 168/230 (73%), Gaps = 11/230 (4%)

Query: 13  RRRGAGKRATTAPSPEAEPMSAPAPAAPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAA 72
           RR    KR   A + + E +   +PA PCGACKFLRRKC+ GCIFAP+F +DQGAA+FAA
Sbjct: 19  RRSTVSKRGMVAQTQD-EAIVGSSPATPCGACKFLRRKCIGGCIFAPYFCTDQGAAKFAA 77

Query: 73  VHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQA 132
           VHKVFGASNVSKLL +IP NRR +A  +ISYEAQARLSDPVYGCVSTILALQQQV SLQA
Sbjct: 78  VHKVFGASNVSKLLSNIPANRRHEAATSISYEAQARLSDPVYGCVSTILALQQQVVSLQA 137

Query: 133 ELTMVQNQLLNSRFVMANALQTSQQPQQPQHVALLHQQQQQPAYSNSSSASTNFINMSNL 192
           EL M+Q QL+NS+F   +ALQT+Q  Q   + A LH     PAYSN+S  STN +N+SN 
Sbjct: 138 ELAMLQTQLMNSKFFYTSALQTTQLHQPNMNAAALH-----PAYSNNSCGSTNLLNLSNF 192

Query: 193 AS--NFDFAAETVLSCHSMEPLHELSRPAHDDEDDEEESQIPIMFTNDHH 240
            +  +FD A +T  S HS+EPL +L+R +  +E++EEES+    F  DHH
Sbjct: 193 NNTPSFDLAMDTTPSSHSLEPL-QLTRLSQYEEEEEEESKTQQTF--DHH 239

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228616|ref|NP_187026.1| LOB domain-containing protein 20 [Arabidopsis thaliana] gi|29428049|sp|Q9SRV3.1|LBD20_ARATH RecName: Full=LOB domain-containing protein 20; AltName: Full=ASYMMETRIC LEAVES 2-like protein 21; Short=AS2-like protein 21 gi|6006865|gb|AAF00641.1|AC009540_18 unknown protein [Arabidopsis thaliana] gi|26451624|dbj|BAC42909.1| unknown protein [Arabidopsis thaliana] gi|30793927|gb|AAP40416.1| unknown protein [Arabidopsis thaliana] gi|219807118|dbj|BAH10565.1| ASYMMETRIC LEAVES2-like 21 protein [Arabidopsis thaliana] gi|332640462|gb|AEE73983.1| LOB domain-containing protein 20 [Arabidopsis thaliana]

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/250 (58%), Positives = 169/250 (67%), Gaps = 28/250 (11%)

Query: 1   MAEQQPD-PISEPRRRG-AGKRATTAPSPEAEPMSAPAP----------AAPCGACKFLR 48
           MA+QQ     S+ RR+  AGKR T+  +P +   S              A+PCGACKFLR
Sbjct: 1   MADQQRGHNTSDSRRKSLAGKR-TSQQTPTSSLSSGGVSMAAATTGTGTASPCGACKFLR 59

Query: 49  RKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQAR 108
           RKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLL HIPVNRR DAVVTISYEAQAR
Sbjct: 60  RKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQAR 119

Query: 109 LSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRFVMANALQTSQQPQQPQHVALLH 168
           LSDPVYGCVSTILALQQQVASLQAEL++VQ+QL+NSR  MAN +Q     QQ Q      
Sbjct: 120 LSDPVYGCVSTILALQQQVASLQAELSVVQSQLINSRVAMANVMQQQTHHQQQQQQL--- 176

Query: 169 QQQQQPAYSNSSSASTNF---------INMSNLASNFDFAAETVLSCHSMEPL--HELSR 217
              QQP YSN+SSAST           +     A ++D  A T L  HS++P+  H+  R
Sbjct: 177 VVMQQPEYSNNSSASTTLAGAAMNSFTMTADAAAVSYDVMAPTNLE-HSLQPMPPHQQRR 235

Query: 218 PAHDDEDDEE 227
             +  ED+EE
Sbjct: 236 GDYQHEDEEE 245

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168012905|ref|XP_001759142.1| predicted protein [Physcomitrella patens subsp. patens] gi|162689841|gb|EDQ76211.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/138 (71%), Positives = 110/138 (79%), Gaps = 10/138 (7%)

Query: 38  AAPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDA 97
            APCGACKFLRRKCV GCIFAP+F ++QGAA+FAAVHKVFGASNV+KLLLHIP  RR DA
Sbjct: 2   GAPCGACKFLRRKCVRGCIFAPYFSAEQGAAKFAAVHKVFGASNVAKLLLHIPAPRRNDA 61

Query: 98  VVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLN--------SRFVMA 149
           V+TISYEAQARLSDPVYGCV+TI ALQQQVASLQAELTM+Q QL +         R  MA
Sbjct: 62  VLTISYEAQARLSDPVYGCVATIFALQQQVASLQAELTMMQTQLTDRNTHLLQQQRMTMA 121

Query: 150 NALQTSQQPQ--QPQHVA 165
              Q +Q  +  QPQH+A
Sbjct: 122 FGAQGTQAVEFLQPQHLA 139

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	250
TAIR|locus:2079354	273	LBD20 "LOB domain-containing p	0.732	0.670	0.560	3e-46
TAIR|locus:2050951	262	LBD18 "LOB domain-containing p	0.32	0.305	0.825	1.8e-32
TAIR|locus:2085420	218	LBD29 "lateral organ boundarie	0.32	0.366	0.712	1.4e-31
TAIR|locus:2053807	245	LBD16 "lateral organ boundarie	0.32	0.326	0.8	2.6e-31
TAIR|locus:2126881	228	JLO "JAGGED LATERAL ORGANS" [A	0.32	0.350	0.787	5.4e-31
TAIR|locus:2050862	191	LBD19 "LOB domain-containing p	0.308	0.403	0.727	2e-30
TAIR|locus:2126866	220	LBD31 "LOB domain-containing p	0.404	0.459	0.603	5e-28
TAIR|locus:2053813	244	ASL15 "ASYMMETRIC LEAVES 2-lik	0.32	0.327	0.675	2.2e-27
TAIR|locus:2042501	188	LBD14 "LOB domain-containing p	0.32	0.425	0.675	7.3e-27
TAIR|locus:2174989	313	ASL1 "ASYMMETRIC LEAVES 2-like	0.316	0.252	0.637	4e-26

TAIR|locus:2079354 LBD20 "LOB domain-containing protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 111/198 (56%), Positives = 128/198 (64%)

Query:    41 CGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVT 100
             CGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLL HIPVNRR DAVVT
Sbjct:    52 CGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVT 111

Query:   101 ISYEAQARLSDPVYGCVSTIXXXXXXXXXXXXXXTMVQNQLLNSRFVMANXXXXXXXXXX 160
             ISYEAQARLSDPVYGCVSTI              ++VQ+QL+NSR  MAN          
Sbjct:   112 ISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQSQLINSRVAMANVMQQQTHHQQ 171

Query:   161 XXXXXXXXXXXXXXXYSNSSSAST--------NFINMSNLAS-NFDFAAETVLSCHSMEP 211
                            YSN+SSAST        +F   ++ A+ ++D  A T L  HS++P
Sbjct:   172 QQQQLVVMQQPE---YSNNSSASTTLAGAAMNSFTMTADAAAVSYDVMAPTNLE-HSLQP 227

Query:   212 L--HELSRPAHDDEDDEE 227
             +  H+  R  +  ED+EE
Sbjct:   228 MPPHQQRRGDYQHEDEEE 245

GO:0005634 "nucleus" evidence=ISM

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

GO:1900150 "regulation of defense response to fungus" evidence=IMP

TAIR|locus:2050951 LBD18 "LOB domain-containing protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 66/80 (82%), Positives = 73/80 (91%)

Query:    41 CGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVT 100
             CGACKFLRRKCV GCIFAP+F S+QG+A FAAVHKVFGASNVSKLLLHIPV+RR DAVVT
Sbjct:    38 CGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVT 97

Query:   101 ISYEAQARLSDPVYGCVSTI 120
             I YEAQAR+ DP+YGCV+ I
Sbjct:    98 ICYEAQARIRDPIYGCVAHI 117

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0010311 "lateral root formation" evidence=IMP

TAIR|locus:2085420 LBD29 "lateral organ boundaries-domain 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
 Identities = 57/80 (71%), Positives = 68/80 (85%)

Query:    41 CGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVT 100
             CGACKFLRRKC  GC+FAP+F  +QGA+ FAA+HKVFGASN SKLL H+P++ R +A +T
Sbjct:    12 CGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEAAIT 71

Query:   101 ISYEAQARLSDPVYGCVSTI 120
             ISYEAQARL DP+YGCVS I
Sbjct:    72 ISYEAQARLQDPIYGCVSHI 91

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0010311 "lateral root formation" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2053807 LBD16 "lateral organ boundaries-domain 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 64/80 (80%), Positives = 73/80 (91%)

Query:    41 CGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVT 100
             CGACKFLRRKC S CIFAP+F S+QGAARFAA+HKVFGASNVSKLLL++P++ R +AVVT
Sbjct:    16 CGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIHDRCEAVVT 75

Query:   101 ISYEAQARLSDPVYGCVSTI 120
             I+YEAQARL DPVYGCVS I
Sbjct:    76 IAYEAQARLHDPVYGCVSHI 95

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0010311 "lateral root formation" evidence=IMP

TAIR|locus:2126881 JLO "JAGGED LATERAL ORGANS" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 63/80 (78%), Positives = 72/80 (90%)

Query:    41 CGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVT 100
             CGACKFLRRKCV+GCIFAP+F S+QGAA FAAVHKVFGASNVSKLL H+P ++R DAVV+
Sbjct:    18 CGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVPEHKRPDAVVS 77

Query:   101 ISYEAQARLSDPVYGCVSTI 120
             I +EAQARL DP+YGCVS I
Sbjct:    78 ICFEAQARLRDPIYGCVSHI 97

GO:0005634 "nucleus" evidence=ISM

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2050862 LBD19 "LOB domain-containing protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
 Identities = 56/77 (72%), Positives = 67/77 (87%)

Query:    41 CGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVT 100
             CGACKFLRRKCV GC+FAP+F ++QG ARFAAVHKVFGASN SK+LL +P+++R DAVVT
Sbjct:    17 CGACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKMLLRLPLHKRLDAVVT 76

Query:   101 ISYEAQARLSDPVYGCV 117
             + YEA AR+ DPVYG V
Sbjct:    77 LCYEAMARIRDPVYGSV 93

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2126866 LBD31 "LOB domain-containing protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 61/101 (60%), Positives = 70/101 (69%)

Query:    41 CGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVT 100
             CGACKFLRRKCV+ C+FAP+F S +G + F AVHKVFGASN SKLL+ IP +RR DAVVT
Sbjct:    12 CGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPASRRLDAVVT 71

Query:   101 ISYEAQARLSDPVYGCVSTIXXXXXXXXXXXXXXTMVQNQL 141
             ++YEA ARL DPVYGCV  I                VQ QL
Sbjct:    72 LTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQL 112

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2053813 ASL15 "ASYMMETRIC LEAVES 2-like 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 54/80 (67%), Positives = 66/80 (82%)

Query:    41 CGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVT 100
             CGACKFLRR+CV GC+FAP+F  +QGA+ FAA+H+VFGASN SKLL H+P+  R++A  T
Sbjct:     8 CGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDRREAATT 67

Query:   101 ISYEAQARLSDPVYGCVSTI 120
             I YEAQAR  DP+YGCVS I
Sbjct:    68 IYYEAQARRQDPIYGCVSHI 87

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2042501 LBD14 "LOB domain-containing protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 54/80 (67%), Positives = 66/80 (82%)

Query:    41 CGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVT 100
             CG CKFLRRKCV GC+FAP+F  ++G++ FAA+HKVFGASN SKL+ H+P + R DAV T
Sbjct:     8 CGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVRT 67

Query:   101 ISYEAQARLSDPVYGCVSTI 120
             ISYEA +RL DP+YGCVS I
Sbjct:    68 ISYEAHSRLHDPIYGCVSQI 87

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2174989 ASL1 "ASYMMETRIC LEAVES 2-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
 Identities = 51/80 (63%), Positives = 61/80 (76%)

Query:    41 CGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVT 100
             C ACKFLRRKC   C+FAP+F  DQ   +FA VHKVFGASNV+KLL  +  N+R+DAV +
Sbjct:     8 CAACKFLRRKCTQECVFAPYFPPDQ-PQKFAFVHKVFGASNVAKLLNELASNQREDAVNS 66

Query:   101 ISYEAQARLSDPVYGCVSTI 120
             + YEA+ARL DPVYGCV  I
Sbjct:    67 LFYEAEARLRDPVYGCVGLI 86

GO:0005634 "nucleus" evidence=ISM

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SRV3	LBD20_ARATH	No assigned EC number	0.588	0.888	0.8131	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	250
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	2e-47

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  152 bits (386), Expect = 2e-47
 Identities = 60/102 (58%), Positives = 75/102 (73%), Gaps = 1/102 (0%)

Query: 40  PCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVV 99
           PC ACK LRRKC   C+ AP+F ++Q  ARFA VHK+FGASNV+KLL  +P  +R DA+ 
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYFPAEQ-PARFANVHKLFGASNVTKLLKALPPEQRDDAMR 59

Query: 100 TISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQL 141
           ++ YEA AR  DPVYGCV  I +LQQQ+  LQAEL +V+ QL
Sbjct: 60  SLLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQL 101

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	250
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0
COG3416	233	Uncharacterized protein conserved in bacteria [Fun	84.3

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=1.2e-49  Score=315.77  Aligned_cols=101  Identities=57%  Similarity=1.006  Sum_probs=99.2

Q ss_pred             CChhhHHhhhCCCCCCcCCCCCCCchhhHHHHHHHHhhchhhHHHHHhcCCcccHHHHHHHHHHHHhhcccCCCCchHHH
Q 042813           40 PCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVST  119 (250)
Q Consensus        40 ~CAACK~lRRkC~~dCilAPYFPadq~~~rF~~vHkVFG~SNV~KmLq~lpp~~R~dA~~SLvYEA~aR~rDPVyGCvGi  119 (250)
                      +|||||||||||+++|+||||||+++ +++|++||||||++||+|||+++++++|+++|+||+|||++|.+||||||+|+
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP~~~-~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~   79 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFPADQ-PQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGI   79 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCChhH-HHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHH
Confidence            69999999999999999999999998 79999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 042813          120 ILALQQQVASLQAELTMVQNQL  141 (250)
Q Consensus       120 I~~LQ~QI~~lqaELa~vq~qL  141 (250)
                      |+.|+|||+++++||+.++++|
T Consensus        80 i~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   80 ISQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHccC
Confidence            9999999999999999999875

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.30  E-value=7.1  Score=36.12  Aligned_cols=66  Identities=17%  Similarity=0.200  Sum_probs=57.6

Q ss_pred             hHHHHHhcCCcccHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 042813           81 NVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELTMVQNQLLNSRF  146 (250)
Q Consensus        81 NV~KmLq~lpp~~R~dA~~SLvYEA~aR~rDPVyGCvGiI~~LQ~QI~~lqaELa~vq~qLa~~r~  146 (250)
                      |+..-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|+.++.+|+.++.+|+.+..
T Consensus        11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~   76 (233)
T COG3416          11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQA   76 (233)
T ss_pred             HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344456677778999999999999999999999999999999999999999999999999876554

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	250
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	81.9

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=81.90  E-value=1.8  Score=27.89  Aligned_cols=29  Identities=24%  Similarity=0.399  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 042813          118 STILALQQQVASLQAELTMVQNQLLNSRF  146 (250)
Q Consensus       118 GiI~~LQ~QI~~lqaELa~vq~qLa~~r~  146 (250)
                      |.|..|+++|..|+.|++.++-+++..+.
T Consensus         2 geiaalkqeiaalkkeiaalkfeiaalkq   30 (33)
T 4dzn_A            2 GEIAALKQEIAALKKEIAALKFEIAALKQ   30 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            67888999999999999988888875543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00