Citrus Sinensis ID: 042816
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 163 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LQ10 | 557 | Probable aminotransferase | yes | no | 1.0 | 0.292 | 0.607 | 2e-59 | |
| Q8GYY0 | 495 | Probable aminotransferase | no | no | 0.987 | 0.325 | 0.571 | 2e-54 | |
| Q9T065 | 469 | 1-aminocyclopropane-1-car | no | no | 0.950 | 0.330 | 0.451 | 2e-38 | |
| Q42881 | 469 | 1-aminocyclopropane-1-car | N/A | no | 0.938 | 0.326 | 0.457 | 6e-38 | |
| P37821 | 473 | 1-aminocyclopropane-1-car | N/A | no | 0.938 | 0.323 | 0.444 | 2e-37 | |
| Q9M2Y8 | 470 | 1-aminocyclopropane-1-car | no | no | 0.987 | 0.342 | 0.428 | 2e-37 | |
| Q43309 | 474 | 1-aminocyclopropane-1-car | no | no | 0.950 | 0.327 | 0.425 | 9e-37 | |
| Q9S9U6 | 460 | 1-aminocyclopropane-1-car | no | no | 0.938 | 0.332 | 0.418 | 1e-36 | |
| Q9STR4 | 447 | 1-aminocyclopropane-1-car | no | no | 0.944 | 0.344 | 0.478 | 3e-36 | |
| Q00257 | 475 | 1-aminocyclopropane-1-car | N/A | no | 0.938 | 0.322 | 0.444 | 4e-36 |
| >sp|Q9LQ10|1A110_ARATH Probable aminotransferase ACS10 OS=Arabidopsis thaliana GN=ACS10 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 228 bits (580), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 99/163 (60%), Positives = 131/163 (80%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DLS G R + IYS+N SVL+A++KL S VS+P+Q+LL+S +S+ K VQ+F+ NR+R
Sbjct: 395 DLSFRGLRSAAIYSFNESVLSASRKLTTLSPVSSPTQHLLISAISNPKNVQRFVKTNRQR 454
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L+ +Y + V GL++LGIEC +SNGGFYCWADM GLISSYSEKGE+ELW+KLLN+ K+NV
Sbjct: 455 LQSIYTELVEGLKELGIECTRSNGGFYCWADMRGLISSYSEKGEIELWNKLLNIGKINVI 514
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKSHS 163
PGS CHCIEPGWF F+ L+E+D+ VVM RIR++ +TCKS +
Sbjct: 515 PGSCCHCIEPGWFRICFSNLSERDVPVVMNRIRKVCETCKSQN 557
|
Probable aminotransferase. Does not have 1-aminocyclopropane-1-carboxylate synthase (ACS) activity, suggesting that it is not involved in ethylene biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: - |
| >sp|Q8GYY0|1A112_ARATH Probable aminotransferase ACS12 OS=Arabidopsis thaliana GN=ACS12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 211 bits (536), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 92/161 (57%), Positives = 129/161 (80%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DLS+PGFR VIYS++ V+ AAKKL RFSSV Q +L+S+LSD +F++ ++ +R+R
Sbjct: 335 DLSIPGFRAGVIYSFHEDVVNAAKKLMRFSSVPVLVQRILISLLSDVRFIEGYMAAHRQR 394
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
+R +++FV GL+QLGI CA+S GG YCW DMS L++SYSEKGELEL++KLL VAK+N T
Sbjct: 395 IRDKHIRFVEGLKQLGIPCAESGGGLYCWVDMSSLLTSYSEKGELELFEKLLTVAKINAT 454
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKS 161
PG++C+CIEPGWF FT L ++DI V+MERIR+++++ +S
Sbjct: 455 PGTACYCIEPGWFRCCFTALADEDIPVIMERIRQLAESFRS 495
|
Probable aminotransferase. Does not have 1-aminocyclopropane-1-carboxylate synthase (ACS) activity, suggesting that it is not involved in ethylene biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q9T065|1A18_ARATH 1-aminocyclopropane-1-carboxylate synthase 8 OS=Arabidopsis thaliana GN=ACS8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 106/155 (68%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ VIYS ++ V++AA K++ F +S+ +Q LL ++LSD F + ++ N+ R
Sbjct: 273 DLGLPGFRVGVIYSNDDFVVSAATKMSSFGLISSQTQYLLSALLSDKTFTKNYLEENQIR 332
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L+ + K V+GL GIEC KSN G +CW DM L+ S + + E+ELW K++ K+N++
Sbjct: 333 LKNRHKKLVSGLEAAGIECLKSNAGLFCWVDMRHLLKSNTFEAEIELWKKIVYEVKLNIS 392
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155
PGSSCHC EPGWF F L+E+ + V ++R++R
Sbjct: 393 PGSSCHCNEPGWFRVCFANLSEETLKVALDRLKRF 427
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q42881|1A13_SOLLC 1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 156 bits (394), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 102/153 (66%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFRI IYS + V++AA K++ F VS+ +Q LL MLSD KF +K+I+ N++R
Sbjct: 273 DLGLPGFRIGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSCMLSDKKFTKKYISENQKR 332
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L++ + V GL+ GI C +SN G +CW DM L+SS + E++LW K++ +N++
Sbjct: 333 LKKRHAMLVKGLKSAGINCLESNAGLFCWVDMRHLLSSNNFDAEMDLWKKIVYDVGLNIS 392
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153
PGSSCHC EPGWF F ++E + + M RI+
Sbjct: 393 PGSSCHCTEPGWFRVCFANMSEDTLDLAMRRIK 425
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Solanum lycopersicum (taxid: 4081) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|P37821|1A1C_MALDO 1-aminocyclopropane-1-carboxylate synthase OS=Malus domestica GN=ACS-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 102/153 (66%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYS ++ V+AAA K++ F VS+ +Q+LL +MLSD K + +I N +R
Sbjct: 274 DLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKR 333
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L++ K V+GL++ GI C N G +CW DM L+ S + + E+ELW K++ +N++
Sbjct: 334 LKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNIS 393
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153
PGSSCHC EPGWF F L E+ + + M+R++
Sbjct: 394 PGSSCHCTEPGWFRVCFANLPERTLDLAMQRLK 426
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Malus domestica (taxid: 3750) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q9M2Y8|1A19_ARATH 1-aminocyclopropane-1-carboxylate synthase 9 OS=Arabidopsis thaliana GN=ACS9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 105/161 (65%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYS + V++AA K++ F VS+ +Q LL ++LSD KF +++ N++R
Sbjct: 273 DLGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLSDKKFTSTYLDENQKR 332
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L+ K V+GL GI C KSN G +CW DM L+ + + + ELELW K++ K+N++
Sbjct: 333 LKIRQKKLVSGLEAAGITCLKSNAGLFCWVDMRHLLDTNTFEAELELWKKIVYDVKLNIS 392
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKS 161
PGSSCHC EPGWF F ++E + + M+R++ ++ S
Sbjct: 393 PGSSCHCTEPGWFRVCFANMSEDTLDLAMKRLKEYVESTDS 433
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q43309|1A14_ARATH 1-aminocyclopropane-1-carboxylate synthase 4 OS=Arabidopsis thaliana GN=ACS4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (384), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 104/155 (67%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYS + V++AA K++ F VS+ +Q LL S+LSD KF + ++ N++R
Sbjct: 274 DLGLPGFRVGAIYSNDKDVISAATKMSSFGLVSSQTQYLLSSLLSDKKFTKNYLRENQKR 333
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L+ K V GL +GI+C KSN G +CW DM L+ S + + E++LW K++ K+N++
Sbjct: 334 LKNRQRKLVLGLEAIGIKCLKSNAGLFCWVDMRPLLRSKTFEAEMDLWKKIVYEVKLNIS 393
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155
PGSSCHC EPGWF F + ++ + + ++R++ +
Sbjct: 394 PGSSCHCEEPGWFRVCFANMIDETLKLALKRLKML 428
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q9S9U6|1A111_ARATH 1-aminocyclopropane-1-carboxylate synthase 11 OS=Arabidopsis thaliana GN=ACS11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 103/153 (67%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ +IYS N V++AA K++ F +S+ +Q+LL ++LSD +F ++ N++R
Sbjct: 268 DLGLPGFRVGLIYSNNEKVVSAATKMSSFGLISSQTQHLLANLLSDERFTTNYLEENKKR 327
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
LR + V+GL++ GI C KSN G +CW D+ L+ S + + E LW K++ +N++
Sbjct: 328 LRERKDRLVSGLKEAGISCLKSNAGLFCWVDLRHLLKSNTFEAEHSLWTKIVCEVGLNIS 387
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153
PGSSCHC EPGWF F ++++ + V M+R++
Sbjct: 388 PGSSCHCDEPGWFRVCFANMSDQTMEVAMDRVK 420
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q9STR4|1A17_ARATH 1-aminocyclopropane-1-carboxylate synthase 7 OS=Arabidopsis thaliana GN=ACS7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 109/161 (67%), Gaps = 7/161 (4%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYSYN++V+ A++++ F+ VS+ +Q++L SMLSD +F +K+I INRER
Sbjct: 286 DLGLPGFRVGTIYSYNDNVVRTARRMSSFTLVSSQTQHMLASMLSDEEFTEKYIRINRER 345
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
LRR Y V GL++ GIEC K N G +CW ++ L+ ++ GEL+LWD +L +N++
Sbjct: 346 LRRRYDTIVEGLKKAGIECLKGNAGLFCWMNLGFLLEKKTKDGELQLWDVILKELNLNIS 405
Query: 121 PGSSCHCIEPGWFSFSFTLLTE-------KDIHVVMERIRR 154
PGSSCHC E GWF F ++E K IH M+R RR
Sbjct: 406 PGSSCHCSEVGWFRVCFANMSENTLEIALKRIHEFMDRRRR 446
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q00257|1A12_CUCMA 1-aminocyclopropane-1-carboxylate synthase CMA101 OS=Cucurbita maxima GN=ACS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (379), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 101/153 (66%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYS ++ V+AAA K++ F VS+ +Q LL +MLSD KF +I+ N++R
Sbjct: 273 DLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQYLLSAMLSDKKFTISYISENQKR 332
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L++ V+GL++ GI C SN G +CW DM L+ S + ELELW K++ +N++
Sbjct: 333 LKQRQKMLVSGLQKAGINCLDSNAGLFCWVDMRHLLESDKFESELELWKKIVYEVGLNIS 392
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153
PGSSCHC EPGWF F ++E + + + R++
Sbjct: 393 PGSSCHCTEPGWFRVCFANMSESTLKLAVRRLK 425
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Cucurbita maxima (taxid: 3661) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 163 | ||||||
| 37030000 | 480 | 1-aminocyclopropane-1-carboxylate syntha | 1.0 | 0.339 | 0.791 | 2e-74 | |
| 164430546 | 480 | 1-aminocyclopropane-1-carboxylate syntha | 1.0 | 0.339 | 0.791 | 2e-74 | |
| 164430548 | 490 | 1-aminocyclopropane-1-carboxylate syntha | 1.0 | 0.332 | 0.791 | 2e-74 | |
| 164430550 | 488 | 1-aminocyclopropane-1-carboxylate syntha | 1.0 | 0.334 | 0.785 | 1e-73 | |
| 359497673 | 310 | PREDICTED: probable aminotransferase ACS | 0.987 | 0.519 | 0.751 | 1e-68 | |
| 255537157 | 556 | acc synthase, putative [Ricinus communis | 1.0 | 0.293 | 0.736 | 8e-68 | |
| 224074739 | 551 | predicted protein [Populus trichocarpa] | 1.0 | 0.295 | 0.748 | 7e-67 | |
| 388491380 | 499 | unknown [Lotus japonicus] | 1.0 | 0.326 | 0.730 | 3e-66 | |
| 356497187 | 502 | PREDICTED: probable aminotransferase ACS | 0.993 | 0.322 | 0.716 | 7e-66 | |
| 296083566 | 352 | unnamed protein product [Vitis vinifera] | 0.944 | 0.437 | 0.759 | 1e-65 |
| >gi|37030000|gb|AAQ88100.1| 1-aminocyclopropane-1-carboxylate synthase [Rosa hybrid cultivar] | Back alignment and taxonomy information |
|---|
Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 129/163 (79%), Positives = 145/163 (88%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DLSLPGFR+ IYS+N +VL AAKKL RFSS+SAPSQ LL+SMLSDTKF+ KFI INRER
Sbjct: 318 DLSLPGFRVGAIYSFNKNVLTAAKKLTRFSSISAPSQRLLISMLSDTKFMHKFIEINRER 377
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
LR +Y++FV GL+QLGIEC KSNGGFYCWAD+SGLI SYSEKGELELWD+LLNV K+NVT
Sbjct: 378 LRGMYLRFVTGLKQLGIECTKSNGGFYCWADLSGLIRSYSEKGELELWDRLLNVGKLNVT 437
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKSHS 163
PGSSCHCIEPGWF F FT LTEKDI VV+ERIR I++TCKSHS
Sbjct: 438 PGSSCHCIEPGWFRFCFTTLTEKDIPVVIERIRNIAETCKSHS 480
|
Source: Rosa hybrid cultivar Species: Rosa hybrid cultivar Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|164430546|gb|ABY55587.1| 1-aminocyclopropane-1-carboxylate synthase [Rosa hybrid cultivar] | Back alignment and taxonomy information |
|---|
Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 129/163 (79%), Positives = 145/163 (88%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DLSLPGFR+ IYS+N +VL AAKKL RFSS+SAPSQ LL+SMLSDTKF+ KFI INRER
Sbjct: 318 DLSLPGFRVGAIYSFNKNVLTAAKKLTRFSSISAPSQRLLISMLSDTKFMHKFIEINRER 377
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
LR +Y++FV GL+QLGIEC KSNGGFYCWAD+SGLI SYSEKGELELWD+LLNV K+NVT
Sbjct: 378 LRGMYLRFVTGLKQLGIECTKSNGGFYCWADLSGLIRSYSEKGELELWDRLLNVGKLNVT 437
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKSHS 163
PGSSCHCIEPGWF F FT LTEKDI VV+ERIR I++TCKSHS
Sbjct: 438 PGSSCHCIEPGWFRFCFTTLTEKDIPVVIERIRNIAETCKSHS 480
|
Source: Rosa hybrid cultivar Species: Rosa hybrid cultivar Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|164430548|gb|ABY55588.1| 1-aminocyclopropane-1-carboxylate synthase [Rosa hybrid cultivar] | Back alignment and taxonomy information |
|---|
Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 129/163 (79%), Positives = 145/163 (88%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DLSLPGFR+ IYS+N +VL AAKKL RFSS+SAPSQ LL+SMLSDTKF+ KFI INRER
Sbjct: 328 DLSLPGFRVGAIYSFNKNVLTAAKKLTRFSSISAPSQRLLISMLSDTKFMHKFIEINRER 387
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
LR +Y++FV GL+QLGIEC KSNGGFYCWAD+SGLI SYSEKGELELWD+LLNV K+NVT
Sbjct: 388 LRGMYLRFVTGLKQLGIECTKSNGGFYCWADLSGLIRSYSEKGELELWDRLLNVGKLNVT 447
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKSHS 163
PGSSCHCIEPGWF F FT LTEKDI VV+ERIR I++TCKSHS
Sbjct: 448 PGSSCHCIEPGWFRFCFTTLTEKDIPVVIERIRNIAETCKSHS 490
|
Source: Rosa hybrid cultivar Species: Rosa hybrid cultivar Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|164430550|gb|ABY55589.1| 1-aminocyclopropane-1-carboxylate synthase [Rosa hybrid cultivar] | Back alignment and taxonomy information |
|---|
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 128/163 (78%), Positives = 146/163 (89%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DLSLPGFR+ IYS+N +VL+AAKKL RFSS+SAPSQ LL+SMLSDTKF+ KFI +NRER
Sbjct: 326 DLSLPGFRVGAIYSFNKNVLSAAKKLTRFSSISAPSQRLLISMLSDTKFMHKFIEMNRER 385
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
LR +Y++FV GL+QLGIEC KS+GGFYCWAD+SGLI SYSEKGELELWD+LLNV K+NVT
Sbjct: 386 LRGMYLRFVTGLKQLGIECTKSSGGFYCWADLSGLIRSYSEKGELELWDRLLNVGKLNVT 445
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKSHS 163
PGSSCHCIEPGWF F FT LTEKDI VVMERIR I++TCKSHS
Sbjct: 446 PGSSCHCIEPGWFRFCFTTLTEKDIPVVMERIRNIAETCKSHS 488
|
Source: Rosa hybrid cultivar Species: Rosa hybrid cultivar Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359497673|ref|XP_002281504.2| PREDICTED: probable aminotransferase ACS10-like, partial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 121/161 (75%), Positives = 142/161 (88%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LP F++ VIYS N +VLAAAKKL+RFSS+SAP+Q L++SMLSD +F+QKFI NRER
Sbjct: 148 DLCLPRFKVGVIYSSNENVLAAAKKLSRFSSISAPTQCLVISMLSDIRFIQKFIQTNRER 207
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L+R+Y KFVAGL+QLGIEC +S+GGFYCWADM GLI SYSEKGELELW+KLLN+AK+NVT
Sbjct: 208 LQRMYTKFVAGLKQLGIECMRSSGGFYCWADMRGLIRSYSEKGELELWNKLLNIAKINVT 267
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKS 161
PGSSCHCIEPGWF FT LTEKDI VVMERIR++S+TC S
Sbjct: 268 PGSSCHCIEPGWFRCCFTTLTEKDIPVVMERIRKVSETCIS 308
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537157|ref|XP_002509645.1| acc synthase, putative [Ricinus communis] gi|223549544|gb|EEF51032.1| acc synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 261 bits (667), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 120/163 (73%), Positives = 140/163 (85%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DLSLPGF++ VI+S N +V+AAAKKL RFSS+SAP+ LL+SMLSD KFV+ I NR R
Sbjct: 394 DLSLPGFKVGVIFSSNENVVAAAKKLTRFSSISAPTHRLLISMLSDIKFVRDIIQTNRNR 453
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L+++YV F AGL+QLGI+C KSNGGFYCWADMS LISSYSEKGELELWDKLLN AK+N T
Sbjct: 454 LQKMYVAFAAGLKQLGIKCIKSNGGFYCWADMSELISSYSEKGELELWDKLLNSAKLNAT 513
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKSHS 163
PGSSCHCIEPGWF F FT LTE+DI VVM+RIR+I++TCKS S
Sbjct: 514 PGSSCHCIEPGWFGFCFTTLTERDIPVVMDRIRKIAETCKSLS 556
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224074739|ref|XP_002304448.1| predicted protein [Populus trichocarpa] gi|222841880|gb|EEE79427.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 258 bits (658), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 122/163 (74%), Positives = 137/163 (84%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DLSLPGFR+ VIYS+N +VLAAAKKL RFSSVSAP+Q+LLVS+LSDT FVQK I NRER
Sbjct: 389 DLSLPGFRVGVIYSFNENVLAAAKKLTRFSSVSAPTQHLLVSLLSDTDFVQKLIKNNRER 448
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L++ Y FVAGL+QLGIECAKS GGF CWADMS LI+SYSEKGELELWDKLLN AK+NVT
Sbjct: 449 LQKTYATFVAGLKQLGIECAKSKGGFSCWADMSELINSYSEKGELELWDKLLNTAKLNVT 508
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKSHS 163
PGS C CIEPGWF F F LTE+DI VVM+RI +I CK+ S
Sbjct: 509 PGSCCRCIEPGWFQFCFANLTERDIPVVMDRILKIVNVCKASS 551
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388491380|gb|AFK33756.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 256 bits (653), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 119/163 (73%), Positives = 139/163 (85%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
+LS+PGF++ VIYSYN +VLAA+ KLARFS+VSAP+Q LL+SMLSDT+F+Q FI + R
Sbjct: 337 ELSVPGFQVGVIYSYNENVLAASNKLARFSAVSAPAQRLLISMLSDTRFIQTFIETKKLR 396
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
LR++Y FVAGL+QL IEC +S+GGF CWAD S LI SYSEKGELELWD+LLNVAK+NVT
Sbjct: 397 LRKMYNAFVAGLKQLEIECTRSSGGFCCWADTSRLIRSYSEKGELELWDRLLNVAKINVT 456
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKSHS 163
PGSSCHCIEPGWFSF FT LTEKDI VMERIR IS+ KSHS
Sbjct: 457 PGSSCHCIEPGWFSFCFTTLTEKDIPAVMERIRMISEITKSHS 499
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497187|ref|XP_003517444.1| PREDICTED: probable aminotransferase ACS10-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 254 bits (649), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 116/162 (71%), Positives = 136/162 (83%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
+LS+PG ++ VIYSYN++V+AA+ KLARFS+VSAP+Q LL+SMLSDT FVQKFI +NR R
Sbjct: 340 ELSVPGLKVGVIYSYNDNVVAASSKLARFSTVSAPTQRLLISMLSDTSFVQKFIEVNRLR 399
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
LR++Y FVAGL+QLGIEC +S+GGF CWADMS LI SYSEKGELELWD+LLNVAK+NVT
Sbjct: 400 LRKMYNTFVAGLKQLGIECTRSSGGFCCWADMSRLIGSYSEKGELELWDRLLNVAKINVT 459
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKSH 162
PGSSCHCIEPGWF F F TEKD+ VVMERIRR H
Sbjct: 460 PGSSCHCIEPGWFRFCFATSTEKDVSVVMERIRRTVDATNGH 501
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083566|emb|CBI23558.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 117/154 (75%), Positives = 136/154 (88%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LP F++ VIYS N +VLAAAKKL+RFSS+SAP+Q L++SMLSD +F+QKFI NRER
Sbjct: 151 DLCLPRFKVGVIYSSNENVLAAAKKLSRFSSISAPTQCLVISMLSDIRFIQKFIQTNRER 210
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L+R+Y KFVAGL+QLGIEC +S+GGFYCWADM GLI SYSEKGELELW+KLLN+AK+NVT
Sbjct: 211 LQRMYTKFVAGLKQLGIECMRSSGGFYCWADMRGLIRSYSEKGELELWNKLLNIAKINVT 270
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
PGSSCHCIEPGWF FT LTEKDI VVMERIR+
Sbjct: 271 PGSSCHCIEPGWFRCCFTTLTEKDIPVVMERIRK 304
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 163 | ||||||
| TAIR|locus:2015509 | 557 | ACS10 "ACC synthase 10" [Arabi | 1.0 | 0.292 | 0.607 | 1.3e-54 | |
| TAIR|locus:2165306 | 495 | ACS12 "1-amino-cyclopropane-1- | 0.987 | 0.325 | 0.571 | 7.4e-50 | |
| TAIR|locus:2136779 | 447 | ACS7 "1-amino-cyclopropane-1-c | 0.932 | 0.340 | 0.473 | 1.8e-39 | |
| UNIPROTKB|O80334 | 467 | O80334 "1-aminocyclopropane-1- | 1.0 | 0.349 | 0.451 | 8e-37 | |
| TAIR|locus:2137579 | 469 | ACS8 "1-amino-cyclopropane-1-c | 0.944 | 0.328 | 0.454 | 1.3e-36 | |
| UNIPROTKB|Q43165 | 465 | ST ACS1A "Amino cyclopropane c | 0.938 | 0.329 | 0.424 | 1.7e-36 | |
| UNIPROTKB|A5BL65 | 469 | VITISV_037836 "Putative unchar | 0.938 | 0.326 | 0.444 | 2.1e-36 | |
| UNIPROTKB|O24544 | 472 | VR-ACS6 "1-aminocyclopropane-1 | 0.963 | 0.332 | 0.449 | 7.2e-36 | |
| TAIR|locus:2059170 | 474 | ACS4 "1-aminocyclopropane-1-ca | 0.950 | 0.327 | 0.425 | 4e-35 | |
| TAIR|locus:2097350 | 470 | ACS9 "1-aminocyclopropane-1-ca | 0.987 | 0.342 | 0.428 | 4e-35 |
| TAIR|locus:2015509 ACS10 "ACC synthase 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 99/163 (60%), Positives = 131/163 (80%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DLS G R + IYS+N SVL+A++KL S VS+P+Q+LL+S +S+ K VQ+F+ NR+R
Sbjct: 395 DLSFRGLRSAAIYSFNESVLSASRKLTTLSPVSSPTQHLLISAISNPKNVQRFVKTNRQR 454
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L+ +Y + V GL++LGIEC +SNGGFYCWADM GLISSYSEKGE+ELW+KLLN+ K+NV
Sbjct: 455 LQSIYTELVEGLKELGIECTRSNGGFYCWADMRGLISSYSEKGEIELWNKLLNIGKINVI 514
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKSHS 163
PGS CHCIEPGWF F+ L+E+D+ VVM RIR++ +TCKS +
Sbjct: 515 PGSCCHCIEPGWFRICFSNLSERDVPVVMNRIRKVCETCKSQN 557
|
|
| TAIR|locus:2165306 ACS12 "1-amino-cyclopropane-1-carboxylate synthase 12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 92/161 (57%), Positives = 129/161 (80%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DLS+PGFR VIYS++ V+ AAKKL RFSSV Q +L+S+LSD +F++ ++ +R+R
Sbjct: 335 DLSIPGFRAGVIYSFHEDVVNAAKKLMRFSSVPVLVQRILISLLSDVRFIEGYMAAHRQR 394
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
+R +++FV GL+QLGI CA+S GG YCW DMS L++SYSEKGELEL++KLL VAK+N T
Sbjct: 395 IRDKHIRFVEGLKQLGIPCAESGGGLYCWVDMSSLLTSYSEKGELELFEKLLTVAKINAT 454
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKS 161
PG++C+CIEPGWF FT L ++DI V+MERIR+++++ +S
Sbjct: 455 PGTACYCIEPGWFRCCFTALADEDIPVIMERIRQLAESFRS 495
|
|
| TAIR|locus:2136779 ACS7 "1-amino-cyclopropane-1-carboxylate synthase 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 72/152 (47%), Positives = 107/152 (70%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYSYN++V+ A++++ F+ VS+ +Q++L SMLSD +F +K+I INRER
Sbjct: 286 DLGLPGFRVGTIYSYNDNVVRTARRMSSFTLVSSQTQHMLASMLSDEEFTEKYIRINRER 345
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
LRR Y V GL++ GIEC K N G +CW ++ L+ ++ GEL+LWD +L +N++
Sbjct: 346 LRRRYDTIVEGLKKAGIECLKGNAGLFCWMNLGFLLEKKTKDGELQLWDVILKELNLNIS 405
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152
PGSSCHC E GWF F ++E + + ++RI
Sbjct: 406 PGSSCHCSEVGWFRVCFANMSENTLEIALKRI 437
|
|
| UNIPROTKB|O80334 O80334 "1-aminocyclopropane-1-carboxylate synthase" [Actinidia deliciosa (taxid:3627)] | Back alignment and assigned GO terms |
|---|
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 74/164 (45%), Positives = 108/164 (65%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYS ++ V+AAA K++ F VS+ +Q LL SMLSD F + +I+ N++R
Sbjct: 272 DLGLPGFRVGAIYSNDDVVVAAATKMSSFGLVSSQTQYLLASMLSDKNFTKHYISENQKR 331
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L++ ++GL+ GI C KSN G +CW DM L+SS S E+ELW K++ +N++
Sbjct: 332 LKKRQEMLISGLQSAGIGCLKSNAGLFCWVDMRHLLSSKSFDSEMELWKKIVYQVGLNIS 391
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKS-HS 163
PGSSCHC EPGWF F ++E + + ++RI+ QT + HS
Sbjct: 392 PGSSCHCSEPGWFRVCFANMSEDTLDIAIQRIKTFVQTTNNNHS 435
|
|
| TAIR|locus:2137579 ACS8 "1-amino-cyclopropane-1-carboxylate synthase 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 70/154 (45%), Positives = 106/154 (68%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ VIYS ++ V++AA K++ F +S+ +Q LL ++LSD F + ++ N+ R
Sbjct: 273 DLGLPGFRVGVIYSNDDFVVSAATKMSSFGLISSQTQYLLSALLSDKTFTKNYLEENQIR 332
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L+ + K V+GL GIEC KSN G +CW DM L+ S + + E+ELW K++ K+N++
Sbjct: 333 LKNRHKKLVSGLEAAGIECLKSNAGLFCWVDMRHLLKSNTFEAEIELWKKIVYEVKLNIS 392
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
PGSSCHC EPGWF F L+E+ + V ++R++R
Sbjct: 393 PGSSCHCNEPGWFRVCFANLSEETLKVALDRLKR 426
|
|
| UNIPROTKB|Q43165 ST ACS1A "Amino cyclopropane carboxylate acid synthase" [Solanum tuberosum (taxid:4113)] | Back alignment and assigned GO terms |
|---|
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 65/153 (42%), Positives = 109/153 (71%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYS ++ +++AA K++ F +S+ +Q LL ++LSD KF++ +++ N++R
Sbjct: 273 DLGLPGFRVGAIYSNDDMIVSAATKMSSFGLISSQTQYLLSALLSDQKFMKNYVSENQKR 332
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L++ + V GL+Q+GI C +SN G +CW DM L+SS + GE+ELW K++ +N++
Sbjct: 333 LKKRHEMLVGGLKQIGIRCLESNAGLFCWVDMRHLLSSNTFDGEMELWKKIVYEVGLNIS 392
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153
PGSSCHC EPGWF F ++E +++ ++R++
Sbjct: 393 PGSSCHCTEPGWFRACFANMSEDTLNIAIQRLK 425
|
|
| UNIPROTKB|A5BL65 VITISV_037836 "Putative uncharacterized protein" [Vitis vinifera (taxid:29760)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 68/153 (44%), Positives = 108/153 (70%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYS + +V++AA K++ F VS+ +Q LL MLSD KF + +++ N++R
Sbjct: 273 DLGLPGFRVGAIYSNDVAVVSAATKMSSFGLVSSQTQYLLSVMLSDKKFTKNYVSENQKR 332
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L++ + ++GL+ GI+C KSN G +CW DM L+SS + + E+ELW K+L ++N++
Sbjct: 333 LKQRHQMLISGLQNAGIDCLKSNAGLFCWVDMRHLLSSNTFEAEMELWKKILYDVRLNIS 392
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153
PGSSCHC EPGWF F ++E +++ ++RI+
Sbjct: 393 PGSSCHCTEPGWFRVCFANMSEDTLNLALQRIK 425
|
|
| UNIPROTKB|O24544 VR-ACS6 "1-aminocyclopropane-1-carboxylate synthase" [Vigna radiata var. radiata (taxid:3916)] | Back alignment and assigned GO terms |
|---|
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 71/158 (44%), Positives = 106/158 (67%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYS N V+AAA K++ F VS+ +Q LL +ML D KF + +I+ N +R
Sbjct: 276 DLGLPGFRVGAIYSENEVVVAAATKMSSFGLVSSQTQYLLSAMLGDKKFTKNYISENLKR 335
Query: 61 LRRLYVKFVAGLRQLGIECAKSNG-GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNV 119
L+R V+GL++ GI C K+N G +CW DM L+ S + + E+ELW K+L ++N+
Sbjct: 336 LKRRQRNLVSGLQKAGISCLKTNNAGLFCWVDMRHLLHSNTFEAEMELWKKILYEVRLNI 395
Query: 120 TPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157
+PGSSCHC EPGWF F ++E+ +++ M+R++ Q
Sbjct: 396 SPGSSCHCTEPGWFRMCFANMSEETLNLAMKRLKTFVQ 433
|
|
| TAIR|locus:2059170 ACS4 "1-aminocyclopropane-1-carboxylate synthase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 66/155 (42%), Positives = 104/155 (67%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYS + V++AA K++ F VS+ +Q LL S+LSD KF + ++ N++R
Sbjct: 274 DLGLPGFRVGAIYSNDKDVISAATKMSSFGLVSSQTQYLLSSLLSDKKFTKNYLRENQKR 333
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L+ K V GL +GI+C KSN G +CW DM L+ S + + E++LW K++ K+N++
Sbjct: 334 LKNRQRKLVLGLEAIGIKCLKSNAGLFCWVDMRPLLRSKTFEAEMDLWKKIVYEVKLNIS 393
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155
PGSSCHC EPGWF F + ++ + + ++R++ +
Sbjct: 394 PGSSCHCEEPGWFRVCFANMIDETLKLALKRLKML 428
|
|
| TAIR|locus:2097350 ACS9 "1-aminocyclopropane-1-carboxylate synthase 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 69/161 (42%), Positives = 105/161 (65%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYS + V++AA K++ F VS+ +Q LL ++LSD KF +++ N++R
Sbjct: 273 DLGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLSDKKFTSTYLDENQKR 332
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L+ K V+GL GI C KSN G +CW DM L+ + + + ELELW K++ K+N++
Sbjct: 333 LKIRQKKLVSGLEAAGITCLKSNAGLFCWVDMRHLLDTNTFEAELELWKKIVYDVKLNIS 392
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKS 161
PGSSCHC EPGWF F ++E + + M+R++ ++ S
Sbjct: 393 PGSSCHCTEPGWFRVCFANMSEDTLDLAMKRLKEYVESTDS 433
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 163 | |||
| PLN02607 | 447 | PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl | 5e-59 | |
| PLN02450 | 468 | PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl | 2e-54 | |
| PLN02376 | 496 | PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl | 1e-37 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 8e-31 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 1e-18 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 9e-14 | |
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 3e-11 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 2e-07 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 4e-06 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 4e-05 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 6e-05 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 8e-05 | |
| PRK02731 | 367 | PRK02731, PRK02731, histidinol-phosphate aminotran | 0.002 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 0.002 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 0.003 |
| >gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 5e-59
Identities = 76/154 (49%), Positives = 108/154 (70%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYSYN+ V+ A++++ F+ VS+ +Q+LL SMLSD +F + +I NRER
Sbjct: 280 DLGLPGFRVGTIYSYNDKVVTTARRMSSFTLVSSQTQHLLASMLSDEEFTENYIRTNRER 339
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
LR+ Y V GLR+ GIEC K N G +CW ++S L+ + + +GEL LWD +L K+N++
Sbjct: 340 LRKRYEMIVQGLRRAGIECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNIS 399
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
PGSSCHC EPGWF F ++E + V ++RI R
Sbjct: 400 PGSSCHCSEPGWFRVCFANMSEDTLEVALKRIHR 433
|
Length = 447 |
| >gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 178 bits (452), Expect = 2e-54
Identities = 68/154 (44%), Positives = 105/154 (68%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYS + V++AA K++ F VS+ +Q LL ++LSD KF + ++ N++R
Sbjct: 273 DLGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLSDKKFTKNYLEENQKR 332
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L++ K V+GL GI+C KSN G +CW DM L+ S + + E+ELW K++ K+N++
Sbjct: 333 LKQRQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNIS 392
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
PGSSCHC EPGWF F ++E+ + + M+R++
Sbjct: 393 PGSSCHCTEPGWFRVCFANMSEETLDLAMKRLKS 426
|
Length = 468 |
| >gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 134 bits (337), Expect = 1e-37
Identities = 61/154 (39%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
D+ LPGFR+ ++YS+N+SV++ A+K++ F VS+ +Q +L SMLSD +FV F+ + R
Sbjct: 280 DMGLPGFRVGIVYSFNDSVVSCARKMSSFGLVSSQTQLMLASMLSDDQFVDNFLMESSRR 339
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSY-SEKGELELWDKLLNVAKVNV 119
L + F G+++ I C SN G + W D+ L+ S + E+ELW +++ K+NV
Sbjct: 340 LGIRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNV 399
Query: 120 TPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153
+PGSS C EPGWF F + + +HV + RI+
Sbjct: 400 SPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQ 433
|
Length = 496 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 8e-31
Identities = 42/152 (27%), Positives = 62/152 (40%), Gaps = 10/152 (6%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
L G+R+ I N +V++ +KLAR S Q + LSD V + R+R
Sbjct: 216 AFGLAGWRVGYILG-NAAVISQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQR 274
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
++ GL G+ S GF+ + L L LL V VT
Sbjct: 275 IKERRDYLRDGLEAAGLSVLPSQAGFFLLTGLDPEA-------ALALAQVLLEEVGVYVT 327
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152
PGSS PGW + TE+++ ++E I
Sbjct: 328 PGSSFGG--PGWLRITVAGGTEEELEELLEAI 357
|
Length = 357 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 1e-18
Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 14/156 (8%)
Query: 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRE 59
LPG RI + + +L KKL + S S SQ + L D ++ + RE
Sbjct: 206 FGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDG---EEHLEELRE 262
Query: 60 RLRRLYVKFVAGLRQLGIE-CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVN 118
R RR + L++LG K +GGF+ W D+ E ++LL A V
Sbjct: 263 RYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDE-------EFLERLLLEAGVV 315
Query: 119 VTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
V PGS+ G+ SF E ++ +ER+
Sbjct: 316 VRPGSAFGEGGEGFVRLSFATPEE-ELEEALERLAE 350
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 9e-14
Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 19/166 (11%)
Query: 3 SLPGFRISVIYSYNNSVLAAAKKLA--RFSSVSAPSQNLLVSMLS---DTKFVQKFININ 57
+ G+RI + ++AA +KL S P+Q ++ L+ + V++
Sbjct: 239 GMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEY 298
Query: 58 RERLRRLYVKFVAGLRQL-GIECAKS-NGGFYCWADMSGLISSYSEKGELELWDKLLNVA 115
RER L L ++ G+ K G FY + + L+ S E KLL A
Sbjct: 299 RERRDLLV----EALNEIGGLSVVKPPEGAFYLFPKIPELLDS------EEFAKKLLEEA 348
Query: 116 KVNVTPGSS-CHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160
V V PGS G+ S +E+ + + R+ R +
Sbjct: 349 GVAVVPGSGFGEPPGEGYVRLSLA-TSEETLEEALRRLARFLAEYR 393
|
Length = 393 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 3e-11
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 19 VLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRE--RLRRLYVKFVAGLRQ 74
++ A KL S+ ++ +Q V+ L+ Q + R+ RR + V GL +
Sbjct: 256 LIKAMSKLQSHSTSNPTSIAQYAAVAALNGP---QDEVEEMRQAFEERRDLM--VDGLNE 310
Query: 75 L-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWF 133
+ G+EC K G FY + ++S L+ S LE + LL A V V PG + PG+
Sbjct: 311 IPGLECPKPEGAFYVFPNVSKLLGK-SITDSLEFAEALLEEAGVAVVPGIAFG--APGYV 367
Query: 134 SFSFTLLTEKDIHVVMERIRR 154
S+ E D+ +ERI R
Sbjct: 368 RLSYATSLE-DLEEGLERIER 387
|
Length = 393 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-07
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 45 SDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGE 104
+ V++ I +ER L V GLR+LG+E FY WA + +S
Sbjct: 286 GPQEVVEELRKIYQERRDIL----VEGLRKLGLEVEPPKATFYVWAPVPKGYTS------ 335
Query: 105 LELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155
E LL+ A V VTPG+ G+F + T+ E+ I +ERI+++
Sbjct: 336 AEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTVPDER-IEEAVERIKKL 385
|
Length = 385 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 4e-06
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
Query: 49 FVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELW 108
V++ I + R L + L+++GI+ K FY W + +S E
Sbjct: 288 VVKEIRKIYQRRRDLL----LEALKKIGIDVEKPKATFYVWVPVPEGYTS------AEFA 337
Query: 109 DKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155
+LL V VTPG G+ S T+ E+ + + RI+++
Sbjct: 338 ARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDER-LEEAVARIKKL 383
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-05
Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 19/160 (11%)
Query: 5 PGFRIS-VIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSD---TKFVQKFININRER 60
PG R+ V+ K A S+ SQ L + L + +++ R
Sbjct: 303 PGLRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARR 362
Query: 61 LRRLYVKFVAGLRQLGIECAKSN---GGFYCWADMSGLISSYSEKGELELWDKLLNVAKV 117
L + L + E A GG + W ++ I EL L V
Sbjct: 363 RDAL----LEALAEYLPELATWTRPEGGLFLWLELPEGID------ARELLAAALEKGVV 412
Query: 118 NVTPGSSC--HCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155
GS+ SF+ +E++I ++R+ +
Sbjct: 413 VTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAAL 452
|
Length = 459 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 6e-05
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 48 KFVQKFININRERLRRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSEKGELE 106
K V++ ER R+L +K L+++ I+ + G FY +A++ S + E
Sbjct: 289 KAVEEMRKEYNER-RKLVLKR---LKEMPHIKVFEPKGAFYVFANIDETGMSSEDFAE-- 342
Query: 107 LWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
W LL A+V V PG++ G+ S+ EK I MER+ +
Sbjct: 343 -W--LLEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIE-AMERMEK 386
|
Length = 391 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-05
Identities = 39/126 (30%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 3 SLPGFRISVIYSYNNSVLAAAKKLARFSS-----VSAPSQNLLVSML-SDTKFVQKFINI 56
++ G+RI + N L +A LAR S P Q ++ L D + V+
Sbjct: 240 NMAGWRIG--FMVGNPELVSA--LARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQ 295
Query: 57 NRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAK 116
+ R R + VK GL + G Y WA + Y+ G LE KLLN AK
Sbjct: 296 YKRR-RDVLVK---GLHEAGWMVEMPKASMYVWAKIP---EPYAAMGSLEFAKKLLNEAK 348
Query: 117 VNVTPG 122
V V+PG
Sbjct: 349 VCVSPG 354
|
Length = 395 |
| >gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.002
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 32 VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGF 86
V++ + V+ L D FV+K +N E + L L +LG+E S G F
Sbjct: 256 VNSLALAAAVAALDDDAFVEKSRALNAEGMAWL----TEFLAELGLEYIPSVGNF 306
|
Length = 367 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 2 LSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERL 61
L G R+ + N ++AA K+ +VS+P+ ++ L D ++++ + RE
Sbjct: 214 FGLAGLRVGYAIA-NPELIAALNKVRPPFNVSSPALAAAIAALRDADYLEESVERIREER 272
Query: 62 RRLYVKFVAGLRQLGIECA-KSNGGF 86
RLY A L+ LG+ S F
Sbjct: 273 ERLY----AALKALGLFGVFPSQANF 294
|
Length = 356 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.003
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKL---ARFSS-----VSAPS--QNLLVSMLSDTKFV 50
LSLPG RI Y N + A L F++ V+AP+ Q ++ L T V
Sbjct: 245 SLSLPGERIG--YIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDAT--V 300
Query: 51 QKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCW 89
++I + LY GL +LG EC K G FY +
Sbjct: 301 D--VSIYKRNRDLLY----DGLTELGFECVKPQGAFYLF 333
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 163 | |||
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.97 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.97 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.97 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.96 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.96 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.95 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.94 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.94 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.94 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.94 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.94 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.94 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.94 | |
| PRK07324 | 373 | transaminase; Validated | 99.94 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.94 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.93 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.93 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.93 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.93 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.93 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.93 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.93 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.93 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.93 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.93 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.93 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.93 | |
| PLN02656 | 409 | tyrosine transaminase | 99.93 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.93 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.93 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.92 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.92 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.92 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.92 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.92 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.92 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.92 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.92 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.92 | |
| PLN02187 | 462 | rooty/superroot1 | 99.92 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.92 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.92 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.92 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.92 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.91 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.91 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.91 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.91 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.91 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.91 | |
| PLN02231 | 534 | alanine transaminase | 99.91 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.9 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.9 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.9 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.9 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.9 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.9 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.9 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.9 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.9 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.9 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.89 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.89 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.89 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.89 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.88 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.88 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.87 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.87 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.87 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.87 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.86 | |
| PLN02397 | 423 | aspartate transaminase | 99.86 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.85 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.85 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.85 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.85 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.84 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.83 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.83 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.83 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.83 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.83 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.83 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.82 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.81 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.81 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.81 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.81 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.78 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.77 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.76 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.73 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.66 | |
| PLN02368 | 407 | alanine transaminase | 99.63 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.63 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.55 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.55 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.5 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.49 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.49 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.48 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.48 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.46 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.46 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.44 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.44 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.43 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.43 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.4 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.38 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.38 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.37 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.36 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.36 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.36 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.36 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.34 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.34 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.34 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.33 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.3 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.29 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.28 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.25 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.25 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.21 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.19 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.19 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.19 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.19 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.18 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.18 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.17 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.14 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.13 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.11 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.1 | |
| PLN02721 | 353 | threonine aldolase | 99.09 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.08 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.03 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.03 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.01 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.01 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.01 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.01 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 98.95 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 98.94 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 98.92 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 98.91 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 98.88 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 98.87 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 98.86 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 98.86 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 98.85 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 98.82 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 98.8 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 98.79 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 98.79 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 98.78 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 98.77 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 98.72 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 98.71 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 98.69 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 98.68 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.67 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 98.65 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 98.59 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.57 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 98.55 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 98.54 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 98.54 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 98.53 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 98.51 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 98.44 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 98.42 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 98.38 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 98.35 | |
| PLN02242 | 418 | methionine gamma-lyase | 98.32 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 98.31 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 98.26 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 98.2 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 98.16 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 98.15 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 98.12 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 98.12 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 98.08 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.06 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 98.06 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 98.05 | |
| PLN02452 | 365 | phosphoserine transaminase | 98.04 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 98.04 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 98.03 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 98.03 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 98.01 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 97.97 | |
| PRK07678 | 451 | aminotransferase; Validated | 97.92 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 97.84 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 97.83 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 97.83 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 97.82 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 97.78 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 97.73 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 97.72 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 97.7 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 97.69 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 97.69 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 97.67 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 97.59 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 97.57 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 97.54 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 97.54 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 97.52 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 97.51 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 97.5 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 97.46 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 97.46 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 97.4 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 97.4 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 97.4 | |
| PRK07046 | 453 | aminotransferase; Validated | 97.38 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 97.37 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 97.33 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 97.32 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 97.3 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 97.3 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 97.29 | |
| PRK06105 | 460 | aminotransferase; Provisional | 97.29 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 97.28 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 97.27 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 97.25 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 97.22 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 97.21 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 97.21 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 97.2 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 97.19 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 97.18 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 97.16 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 97.14 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 97.14 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 97.13 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 97.12 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 97.12 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 97.06 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 97.05 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 97.02 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 97.02 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 97.02 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 97.0 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 96.96 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 96.95 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 96.91 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 96.89 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 96.89 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 96.89 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 96.85 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 96.85 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 96.83 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 96.78 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 96.78 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 96.76 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 96.72 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 96.69 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 96.66 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 96.63 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 96.63 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 96.62 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 96.62 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 96.6 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 96.59 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 96.58 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 96.56 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 96.54 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 96.5 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 96.5 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 96.46 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 96.29 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 96.26 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 96.13 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 96.05 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 95.96 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 95.92 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 95.84 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 95.8 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 95.76 | |
| PLN02880 | 490 | tyrosine decarboxylase | 95.68 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 95.57 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 95.5 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 95.46 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 95.45 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 95.28 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 95.09 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 95.01 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 94.95 | |
| PLN02651 | 364 | cysteine desulfurase | 94.83 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 94.25 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 94.03 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 93.94 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 93.82 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 93.79 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 93.75 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 93.67 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 93.33 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 92.67 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 92.44 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 92.12 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 92.05 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 91.75 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 91.4 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 91.4 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 91.29 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 90.51 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 90.07 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 89.81 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 89.57 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 89.54 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 88.7 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 88.37 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 88.33 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 88.1 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 86.3 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 83.62 | |
| PRK02308 | 303 | uvsE putative UV damage endonuclease; Provisional | 83.18 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 82.52 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 81.52 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 81.49 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 81.17 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 80.42 |
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-30 Score=198.65 Aligned_cols=163 Identities=48% Similarity=0.960 Sum_probs=142.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
|||+||+|+||++++++++++.+.....+..+|++.|.+++.+|+++++++++++..++.++++++.+.+.|++.|+.+.
T Consensus 280 ~fg~~GlRvG~ivs~n~~l~~~~~~~~~~~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~ 359 (447)
T PLN02607 280 DLGLPGFRVGTIYSYNDKVVTTARRMSSFTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECL 359 (447)
T ss_pred cCCCCcceEEEEEEcCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 68999999999999778888888877666678999999999999999887899999999999999999999999999999
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+|+||+|+|++++..........+.++++.+++++||.|.||+.|+...++|+||+|+..+++.+++++++|.+++++.+
T Consensus 360 ~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~~~ 439 (447)
T PLN02607 360 KGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVALKRIHRFMDRRK 439 (447)
T ss_pred cCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999986543222234568888888878999999999987678999999997688999999999999998877
Q ss_pred hcC
Q 042816 161 SHS 163 (163)
Q Consensus 161 ~~~ 163 (163)
+.|
T Consensus 440 ~~~ 442 (447)
T PLN02607 440 TAS 442 (447)
T ss_pred hhh
Confidence 653
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=193.28 Aligned_cols=151 Identities=25% Similarity=0.424 Sum_probs=136.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
+|+|+|||+||++++++++++.+.+.+.. ++++.+.|.++..+|+.++. +.+.+.+++.|++|++.+.+.|++. |+
T Consensus 237 ~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~-~~~~~~~~~~~~~rrd~l~~~l~~~~g~ 315 (393)
T COG0436 237 TYGMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS-DEVVEEMREEYRERRDLLVEALNEIGGL 315 (393)
T ss_pred cccccccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 58999999999999338999999877774 68999999999999998743 4678899999999999999999999 69
Q ss_pred cccc-CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 78 ECAK-SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
++.. |+|+||+|++++... ++.+|+.+|++++||.|.||+.|+.. +++++|+|++. +.+.+++++++|.++
T Consensus 316 ~~~~~p~Ga~Y~~~~i~~~~------d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~-~~~~l~~a~~rl~~~ 388 (393)
T COG0436 316 SVVKPPEGAFYLFPKIPELL------DSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLAT-SEETLEEALRRLARF 388 (393)
T ss_pred eeccCCCeeEEEEeecCCCC------CHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEec-CHHHHHHHHHHHHHH
Confidence 9988 899999999999753 89999999999999999999999985 78999999998 779999999999999
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+..+
T Consensus 389 ~~~~ 392 (393)
T COG0436 389 LAEY 392 (393)
T ss_pred HHhc
Confidence 8765
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=193.81 Aligned_cols=160 Identities=39% Similarity=0.784 Sum_probs=138.8
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||++++++.+++.+.....+..+|++.|.+++.+|++++++++++++.++.|+++++.+.+.|++.|+++.
T Consensus 280 ~~glpGlRvG~li~~~~~l~~~~~~~~~~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~ 359 (496)
T PLN02376 280 DMGLPGFRVGIVYSFNDSVVSCARKMSSFGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACL 359 (496)
T ss_pred cCCCCcceEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 68999999999999667777777666666678999999999999999887899999999999999999999999999999
Q ss_pred cCCceeEEEeecCCcccC-CChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 81 KSNGGFYCWADMSGLISS-YSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
+|+||+|+|++++..... ....++.++++.|+++.||.|.||+.|+...++|+|||++..+.+++++++++|.+++.+.
T Consensus 360 ~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~~~ 439 (496)
T PLN02376 360 TSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQDFVSKN 439 (496)
T ss_pred CCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999865422 2223457899999987899999999998666899999999668899999999999998765
Q ss_pred h
Q 042816 160 K 160 (163)
Q Consensus 160 ~ 160 (163)
+
T Consensus 440 ~ 440 (496)
T PLN02376 440 K 440 (496)
T ss_pred h
Confidence 4
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-28 Score=189.74 Aligned_cols=160 Identities=43% Similarity=0.866 Sum_probs=136.4
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||++++++.+++.+.+...+.++|.+.|.+++.+|+++.+.+.+++++++.|+++++.+.+.|+++|+.+.
T Consensus 273 ~~~l~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~~ 352 (468)
T PLN02450 273 DLGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCL 352 (468)
T ss_pred cCCCCCccEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 58999999999999546677777776555668999999999999998775568999999999999999999999999999
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+|+||||+|+++++.+......+..++++.|++++||.|.||+.|+...++|+||+++.++++++++++++|.+++.+..
T Consensus 353 ~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~~~~ 432 (468)
T PLN02450 353 KSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLAMKRLKSFVESDS 432 (468)
T ss_pred CCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999986543222334567888888878999999999987668999999996588999999999999887644
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-27 Score=174.50 Aligned_cols=160 Identities=45% Similarity=0.891 Sum_probs=150.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
|||+||+|+|.+...|++++....+...+..+|+..|..++.+|+|..+.+.+++..+++++.+..++.+.|++.|+.+.
T Consensus 304 D~GlpGfRvGviYS~ne~VvsaA~kmssf~~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl 383 (471)
T KOG0256|consen 304 DFGLPGFRVGVIYSNNEDVVSAATKMSSFGLVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKALGIPCL 383 (471)
T ss_pred ccCCCceEEEEEEecChHHHHHHHHHhhccCCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCcee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+.++|+|+|+|+...+...+++.+.++++.++.+-++.+.||+.|.+..+||+|++|+...++.++-+++||..++....
T Consensus 384 ~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~~~~ 463 (471)
T KOG0256|consen 384 KSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLDSQV 463 (471)
T ss_pred ecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999888888888899999999866999999999999889999999999777777779999999887543
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=178.00 Aligned_cols=147 Identities=16% Similarity=0.262 Sum_probs=129.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+|++||+|+||+++ |+++++.+.+... .+++|.+.|.++..+|+++ +.++++.++.|+++++++.+.|+++|++
T Consensus 260 ~~~~~G~RiG~~v~-~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 335 (413)
T PLN00175 260 TFSLTGWKIGWAIA-PPHLTWGVRQAHSFLTFATATPMQWAAVAALRAP---ESYYEELKRDYSAKKDILVEGLKEVGFK 335 (413)
T ss_pred hccCcchheeeeEe-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 47899999999999 9999999988876 3689999999999999886 6789999999999999999999999999
Q ss_pred cccCCceeEEEeecCC-cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC---CCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSG-LISSYSEKGELELWDKLLNVAKVNVTPGSSCHC---IEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~---~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+.+|+||||+|++++. .. .++.++++.|++++||.+.||+.|+. .+++++||+++. +++++++++++|.+
T Consensus 336 ~~~p~g~~f~~~~~~~~~~-----~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~-~~e~l~~~~~rL~~ 409 (413)
T PLN00175 336 VYPSSGTYFVMVDHTPFGF-----ENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCK-DEETLRAAVERMKT 409 (413)
T ss_pred ecCCCeeEEEEEeccccCC-----CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcC-CHHHHHHHHHHHHH
Confidence 9999999999999853 21 25689999998778999999999963 236799999997 89999999999998
Q ss_pred HHH
Q 042816 155 ISQ 157 (163)
Q Consensus 155 ~~~ 157 (163)
+++
T Consensus 410 ~~~ 412 (413)
T PLN00175 410 KLK 412 (413)
T ss_pred HHh
Confidence 875
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-26 Score=175.42 Aligned_cols=153 Identities=20% Similarity=0.322 Sum_probs=133.5
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ |+++++.+.+... .++++.+.|.++..+|+++ ++++++.++.|+++++.+.+.|+++|+.
T Consensus 239 ~~~~pGlR~G~~v~-~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~---~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 314 (405)
T PRK09148 239 TFSMAGWRMGFAVG-NERLIAALTRVKSYLDYGAFTPIQVAATAALNGP---QDCIAEMRELYKKRRDVLVESFGRAGWD 314 (405)
T ss_pred ccCCcchheeeeeC-CHHHHHHHHHHHHHhccCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 48999999999999 9999999998876 3678899999999999875 6889999999999999999999999988
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
+..|+||+|+|+++|..... .++.++++.+++++||.|.||+.|+..+++|+||+++. +.+++.+++++|.+++.+
T Consensus 315 ~~~p~~g~f~~~~l~~~~~~---~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~-~~~~l~~al~~l~~~l~~ 390 (405)
T PRK09148 315 IPPPAASMFAWAPIPEAFRH---LGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVE-NEQRIRQAARNIKRFLSS 390 (405)
T ss_pred cCCCCeeEEEEEECCCccCC---CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHH
Confidence 88899999999999864210 14678998888768999999999975557899999995 899999999999999987
Q ss_pred hhh
Q 042816 159 CKS 161 (163)
Q Consensus 159 ~~~ 161 (163)
+.+
T Consensus 391 ~~~ 393 (405)
T PRK09148 391 ADE 393 (405)
T ss_pred HHH
Confidence 765
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-26 Score=176.35 Aligned_cols=149 Identities=21% Similarity=0.365 Sum_probs=131.0
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ |+++++.+.+.... ++++.+.|.++..+|+++ +.++++.++.|+++++++.+.|+++|++
T Consensus 227 ~~~~~GlR~G~~~~-~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 302 (378)
T PRK07682 227 GFAMTGWRLGFIAA-PVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAG---NDDVIRMRDSYRKRRNFFVTSFNEIGLT 302 (378)
T ss_pred cccChhhhhhhhhc-CHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 47899999999999 99999999877653 578899999999999886 4568899999999999999999999999
Q ss_pred cccCCceeEEEeecCC-cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSG-LISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
+..|+||||+|++++. .+ ++.++++.|++++||.|.||..|+..+++++|||++. +.+++++++++|.++++
T Consensus 303 ~~~p~g~~~~~~~~~~~~~------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~ 375 (378)
T PRK07682 303 CHVPGGAFYAFPSISSTGL------SSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT-SLEQLQEAMKRMKRFVE 375 (378)
T ss_pred cCCCCeeEEEEEeccCCCC------CHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHHHHh
Confidence 9999999999999853 22 6788999888668999999999976557999999998 88999999999999987
Q ss_pred Hhh
Q 042816 158 TCK 160 (163)
Q Consensus 158 ~~~ 160 (163)
+++
T Consensus 376 ~~~ 378 (378)
T PRK07682 376 NKK 378 (378)
T ss_pred hcC
Confidence 653
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-26 Score=174.75 Aligned_cols=152 Identities=21% Similarity=0.350 Sum_probs=131.4
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ |+++++.+.+.... .+++++.|.++..+++.. ++++++.++.|+++++.+.+.|++.|++
T Consensus 249 ~~~~~GlRiG~iv~-~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 324 (403)
T PRK08636 249 SYNMAGWRVGFVVG-NKKLVGALKKIKSWLDYGMFTPIQVAATIALDGD---QSCVEEIRETYRKRRDVLIESFANAGWE 324 (403)
T ss_pred ccCCccceeeeeeC-CHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 47999999999999 99999999888763 578888999888877654 5789999999999999999999998888
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
+..|+||+|+|+++|..+.. .++.++++.+++++||.|.||+.|+..+++++||+++. +.+++++++++|.++++.
T Consensus 325 ~~~p~~g~~~~~~l~~~~~~---~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~~~rl~~~l~~ 400 (403)
T PRK08636 325 LQKPRASMFVWAKIPEPARH---LGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIE-NENRIRQAARNIKKFLKE 400 (403)
T ss_pred ccCCCcceEEEEECCCccCC---CCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 88999999999999864310 14688998888778999999999986667899999995 999999999999999987
Q ss_pred hh
Q 042816 159 CK 160 (163)
Q Consensus 159 ~~ 160 (163)
++
T Consensus 401 ~~ 402 (403)
T PRK08636 401 LE 402 (403)
T ss_pred hc
Confidence 54
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=173.20 Aligned_cols=149 Identities=19% Similarity=0.290 Sum_probs=129.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C-
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G- 76 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g- 76 (163)
+||+||+|+||+++ ++++++.+...... .+++.+.|.++..+|+++ ..++++.++.++++++.+.+.|+++ +
T Consensus 234 ~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 309 (389)
T PRK05957 234 AYGFASWRIGYMVI-PIHLLEAIKKIQDTILICPPVVSQYAALGALQVG---KSYCQQHLPEIAQVRQILLKSLGQLQDR 309 (389)
T ss_pred hccCccceeEEEec-CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 47899999999999 89999999988764 467889999999999886 4567777788999999999999987 6
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+.+.+|+||+|+|++++..+ ++.++++.|++++||.|.||+.|+...++|+|||++..+.+++++++++|.+.+
T Consensus 310 ~~~~~~~gg~~~~~~~~~~~------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~ 383 (389)
T PRK05957 310 CTLHPANGAFYCFLKVNTDL------NDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGL 383 (389)
T ss_pred ccccCCCeeEEEEEeCCCCC------ChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHH
Confidence 47888999999999998654 788999999876899999999997655679999998768899999999999988
Q ss_pred HHh
Q 042816 157 QTC 159 (163)
Q Consensus 157 ~~~ 159 (163)
+++
T Consensus 384 ~~~ 386 (389)
T PRK05957 384 KTI 386 (389)
T ss_pred Hhh
Confidence 765
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=174.21 Aligned_cols=150 Identities=19% Similarity=0.283 Sum_probs=129.0
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
+||+||+|+||+++ |+++++.+.+.... .+++.+.|.++..+|+++ ..++++.++.++++++.+.+.|+++ ++
T Consensus 252 ~~~lpGlRiG~ii~-~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 327 (405)
T PRK06207 252 TESLSGYRLGVAFG-SPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEP---DGWMKDRIARHQAIRDDLLRVLRGVEGV 327 (405)
T ss_pred hccCcccceEEEEc-CHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 47899999999999 89999999888764 467889999999999875 3456667777888999999999888 89
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
++.+|+||+|+|++++... .++.++++.|++++||.|.||+.|+...++++|||++. +.+++++++++|.++++
T Consensus 328 ~~~~p~gg~fl~~~l~~~~-----~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~-~~~~l~~al~rl~~~l~ 401 (405)
T PRK06207 328 FVRAPQAGSYLFPRLPRLA-----VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ-DHAAAVAAAERIAQLIE 401 (405)
T ss_pred eecCCCeeEEEEEeCcccC-----CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHH
Confidence 9999999999999998521 15788999988668999999999976567899999998 88999999999999998
Q ss_pred Hhh
Q 042816 158 TCK 160 (163)
Q Consensus 158 ~~~ 160 (163)
+++
T Consensus 402 ~~~ 404 (405)
T PRK06207 402 RYR 404 (405)
T ss_pred Hhh
Confidence 765
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=173.88 Aligned_cols=143 Identities=24% Similarity=0.365 Sum_probs=128.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ |+++++.+.+... .+++|.+.|.++..+|+++ +.++++.++.++++++.+.+.|+++|++
T Consensus 240 ~~~~~GlRiG~~i~-~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 315 (399)
T PRK07681 240 SYSLAGSRIGYMIG-NEEIVRALTQFKSNTDYGVFLPIQKAACAALRNG---AAFCEKNRGIYQERRDTLVDGFRTFGWN 315 (399)
T ss_pred ccCCccceeEEEec-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 48999999999999 9999999988876 3689999999999999987 5788999999999999999999999998
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+..|++|+|+|++++..+ ++.++++.|++++||.|.||+.|+..+++++||+++. +.+++++++++|.+
T Consensus 316 ~~~p~~g~f~~~~l~~~~------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~~~~~l~~l~~ 384 (399)
T PRK07681 316 VDKPAGSMFVWAEIPKGW------TSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ-DEEVLQQAVENIRN 384 (399)
T ss_pred ccCCCeeeEEEEECCCCC------CHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 888999999999998643 6788999998878999999999986557899999996 88999999999987
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=174.99 Aligned_cols=145 Identities=17% Similarity=0.223 Sum_probs=128.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+|| ||+|+||+++ |+++++.+...... .++|.+.|.++..+|+++.+ +++++++++.|+++++.+.+.|++.|++
T Consensus 283 ~~~-~GlRiG~~i~-~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~l~~~~~~~~~~r~~~~~~L~~~~~~ 359 (431)
T PRK15481 283 ALG-PDLRLAFVAS-DSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEY-QARLAQARLFYAQRRQKLARALQQYGIA 359 (431)
T ss_pred ccC-CCceeEEEeC-CHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccH-HHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 478 9999999999 99999999776553 56899999999999999876 7889999999999999999999999988
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
+..|+||+|+|++++. ++.++++.|.+ +||.|.||+.|+.. ..+++|||++..+++++++++++|.+++.
T Consensus 360 ~~~p~gg~f~~~~l~~--------~~~~~~~~l~~-~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 360 IPSPGDGLNLWLPLDT--------DSQATALTLAK-SGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN 430 (431)
T ss_pred cccCCCeEEEEEECCC--------CHHHHHHHHHH-CCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 8889999999999985 45788888875 89999999999643 25699999998788999999999998875
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=171.89 Aligned_cols=151 Identities=17% Similarity=0.321 Sum_probs=130.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+.+.... .+++.+.|.++..+|.++ +.++++.++.++++++.+.+.|++.|+.
T Consensus 234 ~~~~pGlRiG~i~~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 309 (387)
T PRK07683 234 SHSMTGWRIGFLFA-PSYLAKHILKVHQYNVTCASSISQYAALEALTAG---KDDAKMMRHQYKKRRDYVYNRLISMGLD 309 (387)
T ss_pred cccCccceeEEEEc-CHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 48999999999999 99999999877553 457889999999999887 4678899999999999999999998999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
+.+|+||+|+|+.++... .++.+++..+++++||.|.||+.|+..+++++||+++. +++++++++++|.+++++
T Consensus 310 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~-~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 310 VEKPTGAFYLFPSIGHFT-----MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAY-SIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred ccCCCeeEEEEEecccCC-----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 999999999999988521 16678888877779999999999986557899999998 899999999999999876
Q ss_pred hhh
Q 042816 159 CKS 161 (163)
Q Consensus 159 ~~~ 161 (163)
..+
T Consensus 384 ~~~ 386 (387)
T PRK07683 384 KAK 386 (387)
T ss_pred hcc
Confidence 543
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=171.40 Aligned_cols=144 Identities=18% Similarity=0.345 Sum_probs=127.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
+||+||+|+||+++ |+++++.+..... .++++.+.|.++..++.+. ++++++.++.|+++++++.+.|+++ ++
T Consensus 235 ~~~l~GlRiG~~v~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~r~~~~~~~L~~~~~~ 310 (384)
T PRK06348 235 DFAMTGWRIGYVIA-PDYIIETAKIINEGICFSAPTISQRAAIYALKHR---DTIVPLIKEEFQKRLEYAYKRIESIPNL 310 (384)
T ss_pred ccCCccccceeeec-CHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 47899999999999 8999999988776 3678999999999999875 6888999999999999999999988 78
Q ss_pred ccccCCceeEEEeecCC-cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSG-LISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
++.+|+||||+|++++. .+ ++.++++.+++++||.|.||+.|+..+++++||+++. +.+++++++++|.++
T Consensus 311 ~~~~p~gg~~~~~~~~~~~~------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~ 382 (384)
T PRK06348 311 SLHPPKGSIYAFINIKKTGL------SSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTV-GIEVLEEAFNRIEKM 382 (384)
T ss_pred eeccCCeeEEEEEecccCCC------CHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecC-CHHHHHHHHHHHHhh
Confidence 88999999999999974 33 6789999888768999999999986557899999986 899999999999764
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=172.49 Aligned_cols=157 Identities=15% Similarity=0.203 Sum_probs=126.6
Q ss_pred CCCCCceeEEEEEecC----H---HHHHHHHHhhc-ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042816 1 DLSLPGFRISVIYSYN----N---SVLAAAKKLAR-FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~----~---~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
+|++||+|+||+++++ + .+++.+..... ..+++.+.|.++..+++++.+ ++++++.++.|++|++.+.+.|
T Consensus 244 ~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~~L 322 (433)
T PRK06855 244 ELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEY-KNYLKERNKRYEKRSNIAYEKL 322 (433)
T ss_pred ccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhccccCCChHHHHHHHHhhcCCcH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999832 2 33444444433 246789999999999998766 7899999999999999999999
Q ss_pred hhc-CCccccCCceeEEEeecCCcccC-------CC--------------hhhHHHHHHHHHHhcCeEEcCCCCCCCCCC
Q 042816 73 RQL-GIECAKSNGGFYCWADMSGLISS-------YS--------------EKGELELWDKLLNVAKVNVTPGSSCHCIEP 130 (163)
Q Consensus 73 ~~~-g~~~~~~~~g~~~~~~~~~~~~~-------~~--------------~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~ 130 (163)
+++ |+.+.+|+||||+|+++|+.+.. .+ ..++.+++..+++++||.+.||+.|+.. .
T Consensus 323 ~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~-~ 401 (433)
T PRK06855 323 KDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTE-L 401 (433)
T ss_pred hcCCCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCC-C
Confidence 987 88899999999999999874210 00 0136788888888899999999999743 4
Q ss_pred ceEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 131 GWFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 131 ~~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
+++|||++..+.+++++++++|.+++.++
T Consensus 402 ~~~Rls~~~~~~~~i~~~~~~l~~~~~~~ 430 (433)
T PRK06855 402 NGFRVTLLERDEEKFEWIYQTLAEKIEEY 430 (433)
T ss_pred CceEEEECCCcHHHHHHHHHHHHHHHHHH
Confidence 56999999778999999999999998764
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=172.23 Aligned_cols=152 Identities=23% Similarity=0.331 Sum_probs=130.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
+||+||+|+||+++ |+++++.+...... ++++.+.|.++..+|+++ ++++++.++.|+++++.+.+.|+++ |+
T Consensus 242 ~~~~pGlRiG~~~~-~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~g~ 317 (402)
T PRK06107 242 TYAMTGWRIGYAAG-PADLIAAINKLQSQSSSCPSSISQAAAAAALNGD---QSFVTESVAVYKQRRDYALALLNAIPGL 317 (402)
T ss_pred hhcCcccceeeeec-CHHHHHHHHHHHHhcccCCChHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 47899999999999 99999999988863 679999999999999865 5789999999999999999999998 89
Q ss_pred ccccCCceeEEEeecCCcccC---C--ChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISS---Y--SEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~---~--~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
++.+|+||||+|++++..... . ...++.+++..+++++||.|.||+.|+. ++++||+++. +.+++++++++|
T Consensus 318 ~~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~--~~~iRis~~~-~~e~l~~~l~~l 394 (402)
T PRK06107 318 SCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL--SPYFRLSIAT-SLETLEEACARI 394 (402)
T ss_pred cccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCC-CHHHHHHHHHHH
Confidence 999999999999998532110 0 0125678888888879999999999975 6899999997 899999999999
Q ss_pred HHHHHHh
Q 042816 153 RRISQTC 159 (163)
Q Consensus 153 ~~~~~~~ 159 (163)
.++++++
T Consensus 395 ~~~l~~~ 401 (402)
T PRK06107 395 ERAVAAL 401 (402)
T ss_pred HHHHHhc
Confidence 9998765
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=170.25 Aligned_cols=151 Identities=17% Similarity=0.307 Sum_probs=129.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+...... .++|.+.|.++..+|+++. .+....++.|+++++.+.+.|+++|++
T Consensus 238 ~~g~~GlRvG~~v~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~ 313 (391)
T PRK07309 238 SHAMTGWRIGLIFA-PAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGK---DDALPMKKEYIKRRDYIIEKMTDLGFK 313 (391)
T ss_pred hccCccceeEEEEe-CHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCCh---hHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 47899999999999 89999999877553 5789999999999999863 334678899999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
+.+|+||||+|+++|.... .++.++++.+++++||.|.||+.|+..+++++||+++. +.+++++++++|.+++++
T Consensus 314 ~~~p~gg~~~~~~l~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~i~~l~~~~~~ 388 (391)
T PRK07309 314 IIKPDGAFYIFAKIPAGYN----QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA-SMETIKEAMKRLKEYMEE 388 (391)
T ss_pred ecCCCeeEEEEEECCCCCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 9999999999999986421 15678888877778999999999986667899999997 889999999999999987
Q ss_pred hh
Q 042816 159 CK 160 (163)
Q Consensus 159 ~~ 160 (163)
++
T Consensus 389 ~~ 390 (391)
T PRK07309 389 HA 390 (391)
T ss_pred hc
Confidence 64
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=170.87 Aligned_cols=143 Identities=22% Similarity=0.359 Sum_probs=125.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+.+....+ +++++.|.++..++.++ .+++++.++.++++++.+.+.|+++|+.
T Consensus 241 ~~g~~GlRiG~~~~-~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~r~~~~~~L~~~g~~ 316 (389)
T PRK08068 241 TFNMAGWRVAFAVG-NESVIEAINLLQDHLFVSLFGAIQDAAIEALLSD---QSCVAELVARYESRRNAFISACREIGWE 316 (389)
T ss_pred ccCCccceeEeEec-CHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 48999999999999 999999998887753 55566888888888765 5788999999999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+.+|+||||+|++++... ++.++++.|++++||.|.||+.|+..+++++||+++. +.+++++++++|.+
T Consensus 317 ~~~~~g~~~~~v~~~~~~------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~ 385 (389)
T PRK08068 317 VDAPKGSFFAWMPVPKGY------TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLT-DEERLREAVERIGK 385 (389)
T ss_pred ccCCCeeEEEEEECCCCC------CHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcC-CHHHHHHHHHHHHH
Confidence 999999999999998643 6789999998768999999999986557899999987 88899999999875
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-25 Score=168.66 Aligned_cols=146 Identities=15% Similarity=0.215 Sum_probs=130.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
.||+||+|+||+++ |+++++.+.+.+.. ++++.+.|.++..++++. +.++++.++.++++++.+.+.|+++ ++
T Consensus 223 ~~~~~G~RiG~i~~-~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~---~~~l~~~~~~~~~~~~~l~~~l~~~~~~ 298 (373)
T PRK07324 223 TYSLPGIRVGWIAA-NEEVIDILRKYRDYTMICAGVFDDMLASLALEHR---DAILERNRKIVRTNLAILDEWVAKEPRV 298 (373)
T ss_pred hcCCccceeEEEec-CHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 48999999999999 99999999998874 578889999999999875 6889999999999999999999988 78
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
.+..|+||+|+|+.++... ++.+|+++|++++||.|.||+.|+. ++++|||++. +++.+++++++|.++++
T Consensus 299 ~~~~p~gg~~~~i~~~~~~------~~~~~~~~ll~~~gv~v~pg~~F~~--~~~iRis~~~-~~~~l~~~l~rl~~~l~ 369 (373)
T PRK07324 299 SYVKPKAVSTSFVKLDVDM------PSEDFCLKLLKETGVLLVPGNRFDL--EGHVRIGYCC-DTETLKKGLKKLSEFLR 369 (373)
T ss_pred eEECCCceEEEEEEeCCCC------CHHHHHHHHHHhcCEEEECccccCC--CCeEEEEecC-CHHHHHHHHHHHHHHHH
Confidence 8899999999999987543 7789999998778999999999975 6799999998 88999999999999997
Q ss_pred Hh
Q 042816 158 TC 159 (163)
Q Consensus 158 ~~ 159 (163)
++
T Consensus 370 ~~ 371 (373)
T PRK07324 370 EF 371 (373)
T ss_pred hc
Confidence 64
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=172.63 Aligned_cols=145 Identities=16% Similarity=0.200 Sum_probs=125.8
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ |+++++.+.+... .++++.+.|.+++.++.+. ++++++.++.|+++++++.+.|++.|++
T Consensus 237 ~~~~~G~RiG~iv~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 312 (386)
T PRK09082 237 TYHVTGWKVGYCVA-PAALSAEFRKVHQYNTFTVNTPAQLALADYLRAE---PEHYLELPAFYQAKRDRFRAALANSRFK 312 (386)
T ss_pred hccchhhhhhhhhC-CHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 47999999999999 8999999988875 3689999999999999743 5778899999999999999999998999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--CCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC--IEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~--~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+.+|+||||+|+++++.- + .++.++++.|++++||.+.||+.|+. .+.+++||+++. +++++++++++|++
T Consensus 313 ~~~~~g~~~~~~~~~~~~---~-~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~-~~~~l~~~~~rl~~ 385 (386)
T PRK09082 313 LLPCEGTYFQLVDYSAIS---D-LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK-QEETLDAAAERLCQ 385 (386)
T ss_pred ccCCCeeEEEEEeccccC---C-CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence 999999999999998410 0 26789999888779999999998863 236899999998 88999999999875
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-25 Score=171.48 Aligned_cols=149 Identities=19% Similarity=0.326 Sum_probs=131.4
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
+||+||+|+||+++ ++++++.+.+... .++++.+.|.++..+|+++.+ .+++++.++.++++++.+.+.|+++ |+
T Consensus 238 ~~~~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 315 (391)
T PRK08361 238 TFAMTGWRLGFVIA-PEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKES-WKAVEEMRKEYNERRKLVLKRLKEMPHI 315 (391)
T ss_pred hcCCcHhhhhhhcc-CHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 48999999999999 8999999887765 367899999999999998754 4789999999999999999999998 89
Q ss_pred ccccCCceeEEEeecCC-cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSG-LISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
++.+|+||||+|++++. .+ ++.++++.|++++||.|.||+.|+..+++++||+++. +++++++++++|.+++
T Consensus 316 ~~~~p~g~~~~~~~l~~~~~------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~al~~l~~~l 388 (391)
T PRK08361 316 KVFEPKGAFYVFANIDETGM------SSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYAT-SKEKLIEAMERMEKAL 388 (391)
T ss_pred eecCCCEEEEEEEECCCCCC------CHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHH
Confidence 99999999999999984 22 6788999888768999999999986567899999997 8889999999999988
Q ss_pred HH
Q 042816 157 QT 158 (163)
Q Consensus 157 ~~ 158 (163)
++
T Consensus 389 ~~ 390 (391)
T PRK08361 389 EE 390 (391)
T ss_pred hc
Confidence 65
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-25 Score=168.21 Aligned_cols=143 Identities=23% Similarity=0.388 Sum_probs=126.5
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ |+++++.+...... .+++.+.|.++..++++. ++++++.++.++++++.+.+.|+++|+.
T Consensus 238 ~~g~~GlRiG~~i~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 313 (383)
T TIGR03540 238 TYNMTGWRIGMAVG-NADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGP---QDVVKEIRKIYQRRRDLLLEALKKIGID 313 (383)
T ss_pred ccCCccceeeEEeC-CHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 47999999999999 99999999887763 467889999999999886 6888999999999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+.+|++|+|+|++++..+ ++.++++.|++++||.|.||+.|+..+++++||+++. +.+++++++++|.+
T Consensus 314 ~~~~~~~~~~~~~l~~~~------~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 314 VEKPKATFYVWVPVPEGY------TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTV-PDERLEEAVARIKK 382 (383)
T ss_pred ecCCCcceEEEEECCCCC------CHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecC-CHHHHHHHHHHHhh
Confidence 999999999999998654 6789999988768999999999975557899999996 88899999988864
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-25 Score=171.12 Aligned_cols=148 Identities=20% Similarity=0.325 Sum_probs=134.7
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL---GIE 78 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---g~~ 78 (163)
+||+|+||+++ |+++++.+...+.. .++|.+.|.+++.++.++.+ ++|++++|+.|++|++++.+.|+++ +++
T Consensus 302 ~PglRlG~vv~-p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~-~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~ 379 (459)
T COG1167 302 APGLRLGYVVA-PPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHY-DRHLRRLRREYARRRDALLEALAEYLPELAT 379 (459)
T ss_pred ccccceeeeeC-CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCee
Confidence 69999999999 99999999988884 68999999999999998777 9999999999999999999999998 489
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC-CCCCCCCC--CceEEEEEecCChhHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP-GSSCHCIE--PGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p-g~~f~~~~--~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
+..|.||||+|+++|+.+ ++.++...+++ +||.+.| |..|...+ .+++|++++..+.+++++++++|.++
T Consensus 380 ~~~p~gG~flwl~l~~~~------~~~~l~~~a~~-~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~ 452 (459)
T COG1167 380 WTRPEGGLFLWLELPEGI------DARELLAAALE-KGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAAL 452 (459)
T ss_pred eecCCceEEEEEEcCCCC------CHHHHHHHHHH-CCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999876 88999998887 8999999 99987543 57999999998899999999999999
Q ss_pred HHHhh
Q 042816 156 SQTCK 160 (163)
Q Consensus 156 ~~~~~ 160 (163)
+.++.
T Consensus 453 ~~~~~ 457 (459)
T COG1167 453 LREAA 457 (459)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-25 Score=169.83 Aligned_cols=146 Identities=19% Similarity=0.323 Sum_probs=119.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ |+++++.+.+....+ +.++..|.++...+.+. ++++++.++.|+++++.+.+.|+++|+.
T Consensus 240 ~~g~~GlRiG~~v~-~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~---~~~l~~~~~~~~~~r~~l~~~L~~~~~~ 315 (388)
T PRK07366 240 SYNMGGFRIGFAIG-NAQLIQALRQVKAVVDFNQYRGILNGAIAALTGP---QATVQQTVQIFRQRRDAFINALHQIGWP 315 (388)
T ss_pred ccCCcchhheehcC-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 48999999999999 999999999887753 33333344444444433 5789999999999999999999998888
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
+..|+||+|+|++++..+. .++.++++.+++++||.|.||+.|+...++|+||+++. +++++++++++|.++
T Consensus 316 ~~~p~~g~f~~~~~~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 316 VPLPEATMYVWAKLPEPWQ----GNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVH-DPDILEEAVERIAAF 387 (388)
T ss_pred ccCCCeeEEEEEECCcccC----CCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecC-CHHHHHHHHHHHHHh
Confidence 8889999999999986320 14678888887778999999999975556899999997 889999999999875
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-25 Score=168.18 Aligned_cols=143 Identities=27% Similarity=0.419 Sum_probs=125.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ |+++++.+.+.... .+++.+.|.++..++.+. +.++++.++.++++++.+.+.|++.|++
T Consensus 240 ~~g~~GlRiG~~i~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 315 (385)
T PRK09276 240 TYNMTGWRIGFAVG-NADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGP---QEVVEELRKIYQERRDILVEGLRKLGLE 315 (385)
T ss_pred hcCCcchhheeeeC-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCc---HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 47999999999999 99999999887764 457778999999999864 6888999999999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+.+|+||||+|+++++.. ++.++++.|++++||.|.||+.|+..+++++||+++. +++++.+++++|.+
T Consensus 316 ~~~~~~~~~~~v~~~~~~------~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~ 384 (385)
T PRK09276 316 VEPPKATFYVWAPVPKGY------TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTV-PDERIEEAVERIKK 384 (385)
T ss_pred ccCCCcceEEEEECCCCC------CHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCC-CHHHHHHHHHHHhh
Confidence 999999999999998653 6789999988768999999999976557899999996 88899999998864
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=168.22 Aligned_cols=150 Identities=23% Similarity=0.367 Sum_probs=130.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ |+++++.+.+.... ++++++.|.++..++.+. +.+++++++.|+++++++.+.|+..|++
T Consensus 238 ~~g~pGlRiG~~~~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 313 (395)
T PRK08175 238 SYNMAGWRIGFMVG-NPELVSALARIKSYHDYGTFTPLQVAAIAALEGD---QQCVRDIAEQYKRRRDVLVKGLHEAGWM 313 (395)
T ss_pred cccCcchhheeeeC-CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 47999999999999 99999999888763 577888999899998765 6789999999999999999999999988
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
+.+|++|+|+|++++..... .++.++++.+++++||.|.||+.|+..+++++||+++. +.+.+++++++|.+++.+
T Consensus 314 ~~~p~~g~~i~i~l~~~~~~---~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~-~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 314 VEMPKASMYVWAKIPEPYAA---MGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIE-NRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred ccCCCEEEEEEEECCcccCC---CCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHHHHHh
Confidence 88899999999999864310 14688998888778999999999976557899999986 889999999999998865
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=166.88 Aligned_cols=148 Identities=22% Similarity=0.350 Sum_probs=126.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ |+++++.+.++... .++|.+.|.++..+|.+. . ++++++.++.|+++++.+.+.|+++|+.
T Consensus 235 ~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~-~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 311 (387)
T PRK08960 235 YFGMTGWRLGWLVA-PPAAVPELEKLAQNLYISASTPAQHAALACFEPE-T-LAILEARRAEFARRRDFLLPALRELGFG 311 (387)
T ss_pred ccCCcccEEEEEEc-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcC-c-HHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 47999999999999 89999999888763 578999999999999764 2 6889999999999999999999998876
Q ss_pred c-ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 79 C-AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+ ..|+||+|+|+++++.. .++.++++.|++++||.|.||+.|+.. .++|+||+++. +.+++++++++|.+++
T Consensus 312 ~~~~p~g~~f~~~~~~~~~-----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~-~~~~l~~al~~l~~~~ 385 (387)
T PRK08960 312 IAVEPQGAFYLYADISAFG-----GDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ-SLPRLQEAVERIARGL 385 (387)
T ss_pred CCcCCCeeEEEEEeccccC-----CCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHH
Confidence 5 57899999999998621 167889988887789999999999753 35799999998 8899999999998876
Q ss_pred H
Q 042816 157 Q 157 (163)
Q Consensus 157 ~ 157 (163)
.
T Consensus 386 ~ 386 (387)
T PRK08960 386 R 386 (387)
T ss_pred h
Confidence 4
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=168.18 Aligned_cols=145 Identities=17% Similarity=0.307 Sum_probs=127.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+..... .++++++.|.++..+|+.. ++++++.++.|+++++.+.+.|+..|++
T Consensus 244 ~~~~~GlRiG~i~~-~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 319 (394)
T PRK05942 244 TYNMAGWRVGFVVG-NRHIIQGLRTLKTNLDYGIFSALQKAAETALQLP---DSYLQQVQERYRTRRDFLIQGLGELGWN 319 (394)
T ss_pred ccCChhhheeeeec-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 48999999999999 9999999998876 3678889999999999764 6788999999999999999999988999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+.+|+||+|+|++++..+ ++.+++..+++++||.|.||+.|+..+++|+||+++. +.+.+.+++++|.++-
T Consensus 320 ~~~~~~~~f~~~~~~~~~------~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~~ 390 (394)
T PRK05942 320 IPPTKATMYLWVPCPVGM------GSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIA-DCDRLGEALDRLKQAG 390 (394)
T ss_pred ecCCCeeeEEEEECCCCC------CHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecC-CHHHHHHHHHHHHHhh
Confidence 999999999999998643 6678888777779999999999976557899999986 7889999999997643
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=168.31 Aligned_cols=145 Identities=21% Similarity=0.252 Sum_probs=122.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHH------------HHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAA------------KKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYV 66 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~------------~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 66 (163)
+||+||+|+||+++ |+++++.+ ..... ..++|.+.|.++..++.+.. ++++++.++.|+++++
T Consensus 250 ~~~~pGlRiG~~i~-~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~r~ 326 (409)
T PRK07590 250 TAGFTGTRCAYTVV-PKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEG--KAQIKELIDYYMENAK 326 (409)
T ss_pred ccCCcCceeEEEEc-CHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHH
Confidence 48999999999999 88888722 12122 24689999999999997642 5789999999999999
Q ss_pred HHHHHhhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHH
Q 042816 67 KFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIH 146 (163)
Q Consensus 67 ~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~ 146 (163)
.+.+.|+++|+++..|+||+|+|++++..+ ++.++++.|++++||.+.||+.|+..+++++||++.. ++++++
T Consensus 327 ~l~~~L~~~~~~~~~~~g~~f~wi~~~~~~------~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~ 399 (409)
T PRK07590 327 IIREGLESAGFEVYGGVNAPYIWVKTPDGM------SSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFG-SRENVL 399 (409)
T ss_pred HHHHHHHhcCCceecCCcceEEEEECCCCC------CHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccC-CHHHHH
Confidence 999999999988888999999999998653 6788998888778999999999976557899999865 889999
Q ss_pred HHHHHHHHH
Q 042816 147 VVMERIRRI 155 (163)
Q Consensus 147 ~~~~~l~~~ 155 (163)
+++++|.++
T Consensus 400 ~~l~rl~~~ 408 (409)
T PRK07590 400 EAMERIKKA 408 (409)
T ss_pred HHHHHHHhh
Confidence 999999875
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=166.37 Aligned_cols=144 Identities=16% Similarity=0.201 Sum_probs=121.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ ++++++.+.+... .+++|.+.|.++..+|.++.+ ..+.++.|+++++.+.+.|+++|++
T Consensus 236 ~~~~pGlRiG~~v~-~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~ 310 (384)
T PRK12414 236 SYHVTGWRVGYCLA-PAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPAS----YLGLGAFYQRKRDLLARELAGSRFE 310 (384)
T ss_pred cccCccceEEEEec-CHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChH----HHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 47899999999999 8999999988875 368899999999999988632 3467889999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCC--CceEEEEEecCChhHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE--PGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~--~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+.+|+||||+|+++++... .++.+++..+++++||.|.||+.|+..+ .+++||+++. +++++++++++|.+
T Consensus 311 ~~~~~gg~~~~~~~~~~~~----~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~~~rl~~ 383 (384)
T PRK12414 311 LLPSEGSFFMLARFRHFSD----ESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK-DDATLVEGARRLCS 383 (384)
T ss_pred ecCCCcceEEEEcccccCC----CCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence 9999999999999875210 1456777667777999999999996432 5899999998 88999999999874
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=167.18 Aligned_cols=156 Identities=17% Similarity=0.328 Sum_probs=126.0
Q ss_pred CCCCCceeEEEEEec-CHHHH------HHHHHhhcc-cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042816 1 DLSLPGFRISVIYSY-NNSVL------AAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~-~~~~~------~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
.|++||||+||++++ |+.++ +.+...... .+++.+.|.++..+|.+.. +++++++++.++++++.+++.|
T Consensus 263 ~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~L 340 (430)
T PLN00145 263 RWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTK--EEFFTKTLGLLKETADICYEKI 340 (430)
T ss_pred ccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999983 34433 344444433 3578999999999998742 6889999999999999999999
Q ss_pred hhc-CCcc-ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHH
Q 042816 73 RQL-GIEC-AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 73 ~~~-g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
+.+ |+++ ..|+||||+|++++.... .+..++.+++..|++++||.+.||+.|+. ++|+||+++. +.+.++++++
T Consensus 341 ~~~~g~~~~~~P~ga~y~~v~l~~~~~-~~~~~~~~~~~~ll~~~gV~v~pG~~fg~--~~~lRis~~~-~~~~l~~al~ 416 (430)
T PLN00145 341 KEIKCITCPHKPEGSMFVMVKLDLSCL-SGIKDDMDFCCKLAKEESVVVLPGSALGM--KNWLRITFAI-DPPSLEDGLE 416 (430)
T ss_pred hcCCCCCCCcCCCeeeEEEeccChhhc-CCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeCC-CHHHHHHHHH
Confidence 998 8875 479999999999974210 01125678998888888999999999985 6899999997 8999999999
Q ss_pred HHHHHHHHhhhc
Q 042816 151 RIRRISQTCKSH 162 (163)
Q Consensus 151 ~l~~~~~~~~~~ 162 (163)
+|.+++.++++.
T Consensus 417 rl~~~~~~~~~~ 428 (430)
T PLN00145 417 RLKSFCLRHAKL 428 (430)
T ss_pred HHHHHHHHhccc
Confidence 999999988764
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=165.84 Aligned_cols=150 Identities=19% Similarity=0.301 Sum_probs=127.0
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+.+.... ++++++.|.++..++... ++++++.++.++++++++.+.|+.+|++
T Consensus 233 ~~g~~GlRiG~~~~-~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 308 (387)
T PRK08912 233 IFSLTGWKVGFVCA-APPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKP---DDYFEGMRADLARSRDRLAAGLRRIGFP 308 (387)
T ss_pred hccCcCceeEEEec-CHHHHHHHHHHHhhccccCChHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 47999999999999 89999999887764 567778898888888654 5778899999999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--CCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC--IEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~--~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+.+|+||||+|++++.... ..++.++++.|++++||.|.||..|+. ..++|+||+++. +.+.+++++++|.+++
T Consensus 309 ~~~~~g~~~l~~~l~~~~~---~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~-~~~~l~~~l~rl~~~l 384 (387)
T PRK08912 309 VLPSQGTYFLTVDLAPLGL---AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK-RDATLDEAVERLAAAR 384 (387)
T ss_pred ccCCCcceEEEecccccCC---CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHHHHH
Confidence 9999999999999975100 026788999988778999999999963 236899999998 7899999999999877
Q ss_pred HH
Q 042816 157 QT 158 (163)
Q Consensus 157 ~~ 158 (163)
.+
T Consensus 385 ~~ 386 (387)
T PRK08912 385 RR 386 (387)
T ss_pred hc
Confidence 54
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=165.80 Aligned_cols=155 Identities=14% Similarity=0.255 Sum_probs=125.5
Q ss_pred CCCCCceeEEEEEec-------CHHHHHHHHHhhcc-cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042816 1 DLSLPGFRISVIYSY-------NNSVLAAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~-------~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
+|++||+|+||++++ ++++++.+.+.... .++|.+.|.++..+|++.. +.++++.++.++++++.+.+.|
T Consensus 242 ~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~L 319 (409)
T PLN02656 242 RWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTD--ESFFKKTINILKQSSDICCDRI 319 (409)
T ss_pred hccCcceeEEEEEEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999994 25788888877654 4688999999999998642 5788999999999999999999
Q ss_pred hhc-CCc-cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHH
Q 042816 73 RQL-GIE-CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 73 ~~~-g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
+.+ ++. +.+|+||+|+|++++..... +..++.+++..+++++||.|.||+.|+. ++++||+++. ++++++++++
T Consensus 320 ~~~~~~~~~~~p~gg~~~w~~l~~~~~~-~~~~~~~~~~~~l~~~gV~v~pg~~fg~--~~~iRi~~~~-~~e~l~eal~ 395 (409)
T PLN02656 320 KEIPCITCPHKPEGSMAVMVKLNLSLLE-DISDDIDFCFKLAREESVIILPGTAVGL--KNWLRITFAA-DPSSLEEALG 395 (409)
T ss_pred hhCCCCcCCcCCCeEEEEEEecchhhcC-CCCCHHHHHHHHHHhCCEEEecchhcCC--CCeEEEEeCC-CHHHHHHHHH
Confidence 987 443 46899999999999742100 0013556666666679999999999974 6899999997 8999999999
Q ss_pred HHHHHHHHhhh
Q 042816 151 RIRRISQTCKS 161 (163)
Q Consensus 151 ~l~~~~~~~~~ 161 (163)
+|.+++.++..
T Consensus 396 rl~~~~~~~~~ 406 (409)
T PLN02656 396 RIKSFYLRHSK 406 (409)
T ss_pred HHHHHHHHhcc
Confidence 99999887654
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=166.19 Aligned_cols=151 Identities=16% Similarity=0.245 Sum_probs=126.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHH-HHHHHHHHHHHHHHHhhhc---
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFINI-NRERLRRLYVKFVAGLRQL--- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~--- 75 (163)
+++||+|+||+++ |+++++.+...... .++|.+.|.++..+|+++++ .++..+ .++.|+++++.+.+.|.+.
T Consensus 250 ~~~pGlRiG~~i~-~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~r~~~~~~~L~~~l~~ 327 (416)
T PRK09440 250 LGLPGVRCGIVIA-DEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDL-LRLSETVIRPFYRQKVQLAIALLRRYLPD 327 (416)
T ss_pred cCCCcceEEEEeC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3799999999999 99999999888774 57899999999999999876 566655 7899999999999999765
Q ss_pred -CCccccCCceeEEEeecCC-cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-------CCceEEEEEecCChhHHH
Q 042816 76 -GIECAKSNGGFYCWADMSG-LISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-------EPGWFSFSFTLLTEKDIH 146 (163)
Q Consensus 76 -g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-------~~~~iRi~~~~~~~~~l~ 146 (163)
++++.+|+||+|+|+++++ .. ++.++++.|.+ +||.|.||+.|+.. ..+++|||++. +.++++
T Consensus 328 ~~~~~~~p~gg~fiw~~~~~~~~------~~~~~~~~l~~-~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~-~~~~l~ 399 (416)
T PRK09440 328 EPCLIHKPEGAIFLWLWFKDLPI------TTEELYQRLKA-RGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ-DDEEIE 399 (416)
T ss_pred CCeEEecCCCceEEEEECCCCCC------CHHHHHHHHHH-CCEEEechHhhCCCCccccCCcCceEEEEecC-CHHHHH
Confidence 3566789999999999986 23 56888887755 89999999998532 13699999987 889999
Q ss_pred HHHHHHHHHHHHhhhc
Q 042816 147 VVMERIRRISQTCKSH 162 (163)
Q Consensus 147 ~~~~~l~~~~~~~~~~ 162 (163)
+++++|.+++++....
T Consensus 400 ~~i~~l~~~~~~~~~~ 415 (416)
T PRK09440 400 KGIAILAEEVEKAYAE 415 (416)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999876543
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=165.05 Aligned_cols=146 Identities=25% Similarity=0.450 Sum_probs=129.0
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
+||+||+|+||+++ ++++++.+.+.... .+++.+.|.++..+|.++ ++++++.++.++++++.+.+.|+++ |+
T Consensus 233 ~~g~~G~RiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 308 (382)
T PRK06108 233 NWAMTGWRLGWLVA-PPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEG---EDFVAELVARLRRSRDHLVDALRALPGV 308 (382)
T ss_pred hccCcccceeeeeC-CHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 47999999999999 89999999877653 568899999999999886 5778899999999999999999988 89
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
++..|+||+|+|++++... ++.++++.|++++||.+.||+.|+..+++++|||++. +.+++++++++|.++++
T Consensus 309 ~~~~p~~g~~~~~~l~~~~------~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 309 EVAKPDGAMYAFFRIPGVT------DSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR-DPARLDEAVERLRRFLA 381 (382)
T ss_pred cccCCCeeEEEEEeCCCCC------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 9999999999999998643 6788999988778999999999975557899999998 99999999999998775
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-24 Score=164.68 Aligned_cols=154 Identities=20% Similarity=0.337 Sum_probs=128.9
Q ss_pred CCCCCceeEEEEEec-----CHHHHHHHHHhhcc-cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 1 DLSLPGFRISVIYSY-----NNSVLAAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~-----~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+||+||+|+||++++ ++++++.+.+.... +++|.+.|.++..++.+. . +.++++.++.++++++.+.+.|++
T Consensus 250 ~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~-~~~~~~~~~~~~~~r~~l~~~L~~ 327 (412)
T PTZ00433 250 NLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGEALLNT-P-QEHLEQIVAKLEEGAMVLYNHIGE 327 (412)
T ss_pred hcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhccCCCChHHHHHHHHHHhcC-c-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999972 24688888776653 689999999999999864 2 688999999999999999999998
Q ss_pred c-CCccccCCceeEEEeecCCc-ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 75 L-GIECAKSNGGFYCWADMSGL-ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 75 ~-g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
+ |+++..|+||+|+|++++.. .. +..++.++++.|++++||.|.||+.|+. ++++||+++. +++++++++++|
T Consensus 328 ~~~~~~~~p~gg~f~~~~l~~~~~~--~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~~iRis~~~-~~e~l~~al~~l 402 (412)
T PTZ00433 328 CIGLSPTMPRGSMFLMSRLDLEKFR--DIKSDVEFYEKLLEEENVQVLPGEIFHM--PGFTRLTISR-PVEVLREAVERI 402 (412)
T ss_pred CCCCcccCCCeeEEEEEEechhhcC--CCCCHHHHHHHHHHhcCEEEeCccccCC--CCeEEEEecC-CHHHHHHHHHHH
Confidence 7 88889999999999998741 10 0014688999998768999999999975 6899999998 789999999999
Q ss_pred HHHHHHhhh
Q 042816 153 RRISQTCKS 161 (163)
Q Consensus 153 ~~~~~~~~~ 161 (163)
.++++++++
T Consensus 403 ~~~~~~~~~ 411 (412)
T PTZ00433 403 KAFCERHKK 411 (412)
T ss_pred HHHHHHhcc
Confidence 999987764
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-24 Score=166.54 Aligned_cols=158 Identities=16% Similarity=0.182 Sum_probs=124.4
Q ss_pred CCCCceeEEEEEe--cCHHHHHHHHHhhcc-cCCChHHHHHHHHhcCCh-----HH--HHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYS--YNNSVLAAAKKLARF-SSVSAPSQNLLVSMLSDT-----KF--VQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 2 ~~~~G~RiG~~i~--~~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~-----~~--~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
||+||||+||+++ .|+++++.+.+.... +++|.++|.++..+++++ .+ ..+++++.++.|++|++.+.+.
T Consensus 302 ~~~~GlRiG~~~~~~~p~~li~~l~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~ 381 (481)
T PTZ00377 302 IGECGRRGGYFELTNIPPEVREQIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDE 381 (481)
T ss_pred ccCCcCceEEEEEeCCCHHHHHHHHHHhheecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999996 278999999887754 579999999999999642 11 1345566666789999999999
Q ss_pred hhhc-CCccccCCceeEEEeecC--CcccC----CChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEecCChh
Q 042816 72 LRQL-GIECAKSNGGFYCWADMS--GLISS----YSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTLLTEK 143 (163)
Q Consensus 72 l~~~-g~~~~~~~~g~~~~~~~~--~~~~~----~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~~~~~ 143 (163)
|+++ |+++.+|+||||+|++++ ..... .+..++..++..+++++||.|.||+.|+.. +++++|||++. +.+
T Consensus 382 L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~-~~e 460 (481)
T PTZ00377 382 LNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILP-PEE 460 (481)
T ss_pred HhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECC-CHH
Confidence 9998 899999999999998764 21100 001134567777888799999999999853 36799999995 889
Q ss_pred HHHHHHHHHHHHHHHhh
Q 042816 144 DIHVVMERIRRISQTCK 160 (163)
Q Consensus 144 ~l~~~~~~l~~~~~~~~ 160 (163)
++++++++|.++++++.
T Consensus 461 ~l~~~l~rl~~~~~~~~ 477 (481)
T PTZ00377 461 QIEEMVKKIKEFHESFM 477 (481)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988654
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-24 Score=164.72 Aligned_cols=145 Identities=19% Similarity=0.187 Sum_probs=120.9
Q ss_pred CCCCCceeEEEEEecCHHHH--------HHHHHhh-c-ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYNNSVL--------AAAKKLA-R-FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVA 70 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~--------~~~~~~~-~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (163)
.||+||+|+||+++ |++++ +.+.... . ..++|.+.|.++..++.++.+ .++.+.++.|+++++.+.+
T Consensus 247 ~~g~pGlRiG~~i~-~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 323 (402)
T TIGR03542 247 TAGFTGVRLGWTVV-PKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGL--QPILEAISYYMENARILRK 323 (402)
T ss_pred ccCCCCcceEEEEe-cHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcch--hHHHHHHHHHHHHHHHHHH
Confidence 47999999999999 88876 3332222 2 346889999999999987643 4567788999999999999
Q ss_pred HhhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHH
Q 042816 71 GLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 71 ~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
.|++.|+++.+|.+|+|+|++++..+ ++.+++..|++++||.|.||+.|+..+++|+||+++. ++++++++++
T Consensus 324 ~L~~~~~~~~~~~~~~f~~v~l~~~~------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~~l~ 396 (402)
T TIGR03542 324 ALEAAGFKVYGGEHAPYLWVKTPEGI------SSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFG-KRENIVEACE 396 (402)
T ss_pred HHHhcCceecCCCceeEEEEECCCCC------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHH
Confidence 99998888888899999999998654 6788999998768999999999976557899999877 8899999999
Q ss_pred HHHHH
Q 042816 151 RIRRI 155 (163)
Q Consensus 151 ~l~~~ 155 (163)
+|.++
T Consensus 397 ~l~~~ 401 (402)
T TIGR03542 397 RIKEA 401 (402)
T ss_pred HHHhh
Confidence 99875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-24 Score=163.29 Aligned_cols=150 Identities=23% Similarity=0.310 Sum_probs=128.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc-cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 78 (163)
+||+||+|+||++++++++++.+.+.... +++|.+.|.+++.+++++ +.++++.++.|+++++.+.+.|+++ |+.
T Consensus 236 ~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 312 (397)
T PRK07568 236 RYSACGARIGCLISKNKELIAAAMKLCQARLSPPTLEQIGAAALLDTP---ESYFDEVREEYKKRRDILYEELNKIPGVV 312 (397)
T ss_pred hccCCCcceEEEecCCHHHHHHHHHHhhccCCCCcHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 47899999999999557898888766553 688999999999999876 6788999999999999999999988 888
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHh-----cCeEEcCCCCCCCC---CCceEEEEEecCChhHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNV-----AKVNVTPGSSCHCI---EPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~gi~v~pg~~f~~~---~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
+..|+||||+|++++.. ++.++++.|+++ +||.+.||+.|+.. +++++||+++. +.++++++++
T Consensus 313 ~~~p~g~~~~~~~l~~~-------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~-~~~~~~~~~~ 384 (397)
T PRK07568 313 CEKPKGAFYIIAKLPVD-------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVL-NEEDLKRAME 384 (397)
T ss_pred ecCCCcceEEEEecCCC-------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeC-CHHHHHHHHH
Confidence 89999999999999852 567898888764 69999999999531 25799999986 7899999999
Q ss_pred HHHHHHHHhhh
Q 042816 151 RIRRISQTCKS 161 (163)
Q Consensus 151 ~l~~~~~~~~~ 161 (163)
+|.++++++.+
T Consensus 385 ~l~~~l~~~~~ 395 (397)
T PRK07568 385 ILKEALEKYNK 395 (397)
T ss_pred HHHHHHHHhhc
Confidence 99999988764
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-24 Score=163.71 Aligned_cols=142 Identities=19% Similarity=0.320 Sum_probs=122.5
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ |+++++.+.+.... ++++.+.|.++...+.+ ++++++.++.|+++++.+.+.|+++ +.
T Consensus 246 ~~~~~GlRiG~~~~-~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~~~-~~ 319 (396)
T PRK09147 246 RSNVPGLRSGFVAG-DAALLKKFLLYRTYHGCAMPPAVQAASIAAWND----EAHVRENRALYREKFDAVTPILAPV-LD 319 (396)
T ss_pred ccCCccceeeeecC-CHHHHHHHHHHhhhcccCCCHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 48999999999999 89999999877753 57888999988888865 4678999999999999999999886 77
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC------CCCceEEEEEecCChhHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------IEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
+..|+||+|+|++++. ++.++++.|++++||.+.||+.|+. .+++++||+++. +++++++++++|
T Consensus 320 ~~~p~~g~f~~~~~~~--------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~-~~~~l~~~l~rl 390 (396)
T PRK09147 320 VQLPDAGFYLWAKVPG--------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA-PLAECVEAAERI 390 (396)
T ss_pred CCCCCeeEEEEEECCC--------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC-CHHHHHHHHHHH
Confidence 7889999999999982 5688989888768999999998863 236899999998 889999999999
Q ss_pred HHHHH
Q 042816 153 RRISQ 157 (163)
Q Consensus 153 ~~~~~ 157 (163)
.++++
T Consensus 391 ~~~~~ 395 (396)
T PRK09147 391 VDFCR 395 (396)
T ss_pred HHHhc
Confidence 98764
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-24 Score=163.33 Aligned_cols=151 Identities=19% Similarity=0.320 Sum_probs=125.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+.+.... .++|.+.|.++..++.++.+ .+.++.++.|+++++.+.+.|+++|+.
T Consensus 233 ~~~~~G~RiG~~~~-~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~L~~~~~~ 309 (388)
T PRK07337 233 YFNMTGWRLGWLVV-PEALVGTFEKLAQNLFICASALAQHAALACFEPDTL--AIYERRRAEFKRRRDFIVPALESLGFK 309 (388)
T ss_pred hcCCchhheeeeec-CHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCch--HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 47999999999999 89999999888763 47899999999999976542 445888999999999999999998876
Q ss_pred c-ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 79 C-AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+ ..|+||+|+|++++... +++..++.+++..+++++||.|.||+.|+.. +++|+||+++. +.+.+++++++|.+++
T Consensus 310 ~~~~p~~g~f~~~~~~~~~-~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~-~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 310 VPVMPDGAFYVYADCRGVA-HPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT-SMSRLEEAVARLGKLF 387 (388)
T ss_pred cccCCCeeEEEEEeccccc-CCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC-CHHHHHHHHHHHHHHh
Confidence 5 47899999999997521 0111267889988877799999999999753 36899999998 8899999999998765
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.2e-24 Score=163.49 Aligned_cols=152 Identities=20% Similarity=0.281 Sum_probs=124.8
Q ss_pred CCCCCceeEEEEEecCH-----HHHHHHHHhhc-ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 1 DLSLPGFRISVIYSYNN-----SVLAAAKKLAR-FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~-----~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+|++||+|+||++++++ ++++.+..... .+++|.+.|.++..+|.+.. ++++++.++.++++++.+.+.|+.
T Consensus 241 ~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~--~~~l~~~~~~~~~~r~~l~~~L~~ 318 (401)
T TIGR01264 241 RWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSILLRTP--QEYFDGTLSVLESNAMLCYGALAA 318 (401)
T ss_pred cCCCccceEEEEEecCcchhHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999321 45666666554 46789999999999997631 688999999999999999999999
Q ss_pred c-CCccccCCceeEEEeecCCc-ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 75 L-GIECAKSNGGFYCWADMSGL-ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 75 ~-g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
+ |+++..|+||+|+|++++.. . ++..++.+++..|++++||.|.||+.|+. ++++||+++. +.+++++++++|
T Consensus 319 ~~~~~~~~p~~g~f~~~~~~~~~~--~~~~~~~~~~~~l~~~~gI~v~pg~~f~~--~~~iRis~~~-~~~~l~~~l~rl 393 (401)
T TIGR01264 319 VPGLRPVMPSGAMYMMVGIEMEHF--PEFKNDVEFTERLVAEQSVFCLPGSCFEY--PGFFRVVLTV-PVVMMEEACSRI 393 (401)
T ss_pred CCCCcccCCCeeeEEEEEeccccc--CCCCCHHHHHHHHHHhCCEEEeCchhcCC--CCeEEEEEcC-CHHHHHHHHHHH
Confidence 8 88888899999999998641 1 00115688998888669999999999964 6899999997 889999999999
Q ss_pred HHHHHHh
Q 042816 153 RRISQTC 159 (163)
Q Consensus 153 ~~~~~~~ 159 (163)
.++++++
T Consensus 394 ~~~~~~~ 400 (401)
T TIGR01264 394 QEFCERH 400 (401)
T ss_pred HHHHhcc
Confidence 9988754
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-24 Score=163.34 Aligned_cols=148 Identities=20% Similarity=0.258 Sum_probs=126.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+.+... .++++.+.|.++..++.++ ++++++.++.++++++++.+.|++.|++
T Consensus 233 ~~g~~GlRiG~~~~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 308 (387)
T PRK07777 233 TFNVTGWKIGWACG-PAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHE---DAWVAALRDSLQAKRDRLAAGLAEAGFE 308 (387)
T ss_pred hccCcCceeEEEec-CHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 48999999999999 8999999988776 3567888999999988876 5788999999999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC---CCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI---EPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~---~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
+.+|+||||+|++++..- ..++.++++.|++++||.|.||+.|+.. .++++||+++. +++++++++++|.++
T Consensus 309 ~~~~~g~~~~~~~~~~~~----~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~-~~~~l~~~l~~l~~~ 383 (387)
T PRK07777 309 VHDSAGTYFLCADPRPLG----YDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCK-RDDTLDEAIRRLRAL 383 (387)
T ss_pred ccCCCcceEEEecccccC----CCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecC-CHHHHHHHHHHHHHH
Confidence 999999999999986310 0267899999987789999999998632 25799999998 899999999999886
Q ss_pred HH
Q 042816 156 SQ 157 (163)
Q Consensus 156 ~~ 157 (163)
..
T Consensus 384 ~~ 385 (387)
T PRK07777 384 RG 385 (387)
T ss_pred hc
Confidence 53
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=167.42 Aligned_cols=156 Identities=17% Similarity=0.280 Sum_probs=121.7
Q ss_pred CCCCCceeEEEEEec-CHH----HHHHHHHhhcc-cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 1 DLSLPGFRISVIYSY-NNS----VLAAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~-~~~----~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+|++||+|+||++++ +++ +++.+...... .+++.++|.++..+|.+...+++++...++.+ ++++++.+.|++
T Consensus 354 ~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~-~~r~~l~~~L~~ 432 (517)
T PRK13355 354 SHMIAGYRIGWMILSGNKRIAKDYIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVY-EQRELVYNALNA 432 (517)
T ss_pred hccCcccceEEEEeeCchhhHHHHHHHHHHHhcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 479999999999962 454 44445443333 57889999999999976432366777665555 557999999999
Q ss_pred c-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHH
Q 042816 75 L-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153 (163)
Q Consensus 75 ~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~ 153 (163)
+ |+++.+|+|+||+|++++... .+..++.+++..+++++||.|.||+.|+...++|+||+++. +.+++++++++|.
T Consensus 433 ~~g~~~~~p~g~fy~~~~l~~~~--~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~-~~~~l~~a~~rl~ 509 (517)
T PRK13355 433 IPGISAVKPKAAFYIFPKIDVKK--FNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLP-RLEDLEDAMDRLA 509 (517)
T ss_pred CCCcccCCCCeeeEEEeecCccc--CCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCC-CHHHHHHHHHHHH
Confidence 8 999999999999999987421 01124667877777779999999999986568999999986 9999999999999
Q ss_pred HHHHHhh
Q 042816 154 RISQTCK 160 (163)
Q Consensus 154 ~~~~~~~ 160 (163)
+++++++
T Consensus 510 ~~~~~~~ 516 (517)
T PRK13355 510 DFFSYYR 516 (517)
T ss_pred HHHHHhh
Confidence 9998654
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=165.01 Aligned_cols=156 Identities=13% Similarity=0.212 Sum_probs=123.4
Q ss_pred CCCCCceeEEEEEecCHH----HHHHHHHhhccc----CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042816 1 DLSLPGFRISVIYSYNNS----VLAAAKKLARFS----SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~----~~~~~~~~~~~~----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
+|++||+|+||+++++++ +++.+......+ +++.+.|.++..+|++.. ++|+++.++.++++++++.+.|
T Consensus 277 ~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~--~~~l~~~~~~l~~~r~~l~~~L 354 (462)
T PLN02187 277 GWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD--KNFFAKKNKILKHNVDLVCDRL 354 (462)
T ss_pred hcCCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999984343 345666665532 458899999999998632 5889999999999999999999
Q ss_pred hhcC-Cc-cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHH
Q 042816 73 RQLG-IE-CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 73 ~~~g-~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
++++ .. +..|+||+|+|++++.... .+..++.+++..+++++||.|.||+.|+. ++|+||+++. +++.++++++
T Consensus 355 ~~~~~~~~~~~P~gg~fl~~~l~~~~~-~~~~~~~~~~~~ll~~~gV~v~pG~~fg~--~~~iRis~~~-~~e~l~~al~ 430 (462)
T PLN02187 355 KDIPCVVCPKKPESCTYLLTKLELSLM-DNIKDDIDFCVKLAREENLVFLPGDALGL--KNWMRITIGV-EAHMLEDALE 430 (462)
T ss_pred hhCCCCcCCCCCCEeEEEEeecChhhC-CCCCCHHHHHHHHHhhCCEEEECccccCC--CCeEEEEeCC-CHHHHHHHHH
Confidence 9884 33 4578999999998863210 01114567877787779999999999974 7899999998 8899999999
Q ss_pred HHHHHHHHhhhc
Q 042816 151 RIRRISQTCKSH 162 (163)
Q Consensus 151 ~l~~~~~~~~~~ 162 (163)
+|.++++++.++
T Consensus 431 rL~~~l~~~~~~ 442 (462)
T PLN02187 431 RLKGFCTRHAKK 442 (462)
T ss_pred HHHHHHHHhhhc
Confidence 999999887653
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=160.56 Aligned_cols=138 Identities=22% Similarity=0.335 Sum_probs=120.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ |+++++.+.+... .++++.+.|.++..+|.+. +++++.++.|+++++.+.+.|++.|+.
T Consensus 224 ~~~~~GlRiG~i~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~ 298 (364)
T PRK07865 224 QSNLAGYRAGFVAG-DPALVAELLEVRKHAGMMVPAPVQAAMVAALGDD----AHVREQRERYARRRAVLRPALEAAGFR 298 (364)
T ss_pred ccCCCceeeEEEec-CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 37899999999999 9999999988765 3678999999999999874 667889999999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~ 153 (163)
+..|+||+|+|++++. ++.++++.|.+ +||.|.||..|+...++++||+++. +++++++++++|.
T Consensus 299 ~~~~~~~~~~~~~~~~--------~~~~~~~~l~~-~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 363 (364)
T PRK07865 299 VDHSEAGLYLWATRGE--------DCWDTVAWLAE-RGILVAPGDFYGPAGAQHVRVALTA-TDERIAAAVERLA 363 (364)
T ss_pred ccCCCccEEEEEeCCC--------CHHHHHHHHHH-CCEEEeCccccCcCCCCEEEEEecC-CHHHHHHHHHHhh
Confidence 9999999999999853 45677777765 8999999998875557899999987 7899999999885
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=162.03 Aligned_cols=153 Identities=22% Similarity=0.371 Sum_probs=125.1
Q ss_pred CCCCCceeEEEEEecCH------HHHHHHHHhhc-ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042816 1 DLSLPGFRISVIYSYNN------SVLAAAKKLAR-FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLR 73 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~------~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 73 (163)
+|++||+|+||++++++ ++++.+..... .+++|.+.|.++..+|.+.. +.++++.++.++++++.+.+.|+
T Consensus 242 ~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~ 319 (403)
T TIGR01265 242 RWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRILGPATIVQGALPDILENTP--QEFFDGKISVLKSNAELCYEELK 319 (403)
T ss_pred ccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 37999999999998433 24555555544 36789999999999997642 68899999999999999999999
Q ss_pred hc-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 74 QL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 74 ~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
.+ |+++..|+||+|+|++++.... .+..++.+++..+++++||.|.||+.|+. ++|+||+++. +.+++++++++|
T Consensus 320 ~~~~~~~~~p~~g~f~~~~~~~~~~-~~~~~~~~~~~~l~~~~gv~v~pg~~f~~--~~~iRis~~~-~~~~l~~~l~~l 395 (403)
T TIGR01265 320 DIPGLVCPKPEGAMYLMVKLELELF-PEIKDDVDFCEKLVREESVICLPGSAFGL--PNWVRITITV-PESMLEEACSRI 395 (403)
T ss_pred cCCCceecCCCceeEEEEecccccc-CCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEecC-CHHHHHHHHHHH
Confidence 88 8888889999999999975310 00115678988887779999999999974 7899999997 889999999999
Q ss_pred HHHHHHh
Q 042816 153 RRISQTC 159 (163)
Q Consensus 153 ~~~~~~~ 159 (163)
.++++++
T Consensus 396 ~~~~~~~ 402 (403)
T TIGR01265 396 KEFCERH 402 (403)
T ss_pred HHHHHhc
Confidence 9998765
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=161.81 Aligned_cols=140 Identities=21% Similarity=0.373 Sum_probs=120.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+|++||+|+||+++ |+++++.+.+.... ++++.+.|.++...+.+ ++++++.++.|+++++.+.+.|+++ +.
T Consensus 245 ~~~~~GlRvG~~i~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~L~~~-~~ 318 (393)
T TIGR03538 245 RSNLPGLRSGFVAG-DAEILKAFLRYRTYHGCAMPIPTQLASIAAWND----EQHVRENRALYREKFAAVLEILGQV-LD 318 (393)
T ss_pred hcCCcccceEEEec-CHHHHHHHHHHHHhhccCcCHHHHHHHHHHhcC----hHHHHHHHHHHHHHHHHHHHHHHhh-Cc
Confidence 38999999999999 89999999888763 57889999998888865 4778999999999999999999886 56
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC------CCCceEEEEEecCChhHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------IEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
+..|+||+|+|++++. ++.++++.|++++||.|.||+.|+. .+.+++||+++. +++++++++++|
T Consensus 319 ~~~p~gg~f~~~~~~~--------~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~-~~~~l~~~l~~l 389 (393)
T TIGR03538 319 LELPDAGFYLWPKVPG--------DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA-PLEECVEAAERI 389 (393)
T ss_pred ccCCCeeEEEEEECCC--------CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC-CHHHHHHHHHHH
Confidence 6789999999999982 5678999888778999999999862 236799999997 889999999999
Q ss_pred HHH
Q 042816 153 RRI 155 (163)
Q Consensus 153 ~~~ 155 (163)
.++
T Consensus 390 ~~~ 392 (393)
T TIGR03538 390 RSF 392 (393)
T ss_pred HHh
Confidence 874
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=160.84 Aligned_cols=157 Identities=15% Similarity=0.271 Sum_probs=120.9
Q ss_pred CCCCCceeEEEEEec-CHHH------HHHHHHhhcc-cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042816 1 DLSLPGFRISVIYSY-NNSV------LAAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~-~~~~------~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
+|++||+|+||++++ ++.+ ++.+.+.... ..++.+.|.++..+|+++. +.++++.++.++++++.+.+.|
T Consensus 243 ~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~L 320 (409)
T PLN00143 243 RWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTT--EDFFSKTINILRAALAFCYDKL 320 (409)
T ss_pred hcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999994 3333 3444444332 3458899999999998632 4677888888888999999999
Q ss_pred hhcC-Cc-cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHH
Q 042816 73 RQLG-IE-CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 73 ~~~g-~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
++++ .. +..|+||+|+|++++.... .+..++.+++..+++++||.+.||+.|+. ++|+||+++. +.++++++++
T Consensus 321 ~~~~~~~~~~~p~gg~f~w~~l~~~~~-~~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~~iRi~~~~-~~~~l~~al~ 396 (409)
T PLN00143 321 KEIPCIMCPQKAEGAFFALVKLNLLLL-EDIEDDMEFCLKLAKEESLIILPGVTVGL--KNWLRITFAV-EQSSLEDGLG 396 (409)
T ss_pred hcCCCCCCCCCCCeeEEEEEecchhhc-CCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEEcC-CHHHHHHHHH
Confidence 8873 33 3578999999999974210 01114677887777779999999999964 7899999997 8899999999
Q ss_pred HHHHHHHHhhhcC
Q 042816 151 RIRRISQTCKSHS 163 (163)
Q Consensus 151 ~l~~~~~~~~~~~ 163 (163)
+|.++++++.+++
T Consensus 397 rl~~~l~~~~~~~ 409 (409)
T PLN00143 397 RLKSFCGRHAKKP 409 (409)
T ss_pred HHHHHHHHhccCC
Confidence 9999999887653
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-23 Score=157.09 Aligned_cols=136 Identities=21% Similarity=0.352 Sum_probs=119.0
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
||+||+|+||+++ |+++++.+.+.... ++++.+.|.++..+|++. .++++.++.|+++++.+.+.|++.|+++
T Consensus 219 ~~~~G~R~G~~i~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~L~~~g~~~ 293 (357)
T TIGR03539 219 SNLAGYRAGFVAG-DPALVAELLTVRKHAGLMVPAPVQAAMVAALGDD----GHVAEQKARYAARRAQLKPALEKAGFRI 293 (357)
T ss_pred cCCCceeEEEEec-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 7899999999999 89999999877653 678999999999999874 6678889999999999999999999999
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
.+|+||+|+|++++. ++.++++.|.+ +||.|.||..|+...++++||+++. +.+++++++++|
T Consensus 294 ~~p~~~~~~~~~~~~--------~~~~~~~~l~~-~gV~v~pg~~f~~~~~~~iRis~~~-~~~~i~~~~~~l 356 (357)
T TIGR03539 294 DHSEAGLYLWATRGE--------DAWDTVDRLAE-LGILVAPGDFYGPAGSQHVRVALTA-TDERIAAAVARL 356 (357)
T ss_pred cCCCccEEEEEECCC--------CHHHHHHHHHh-CCEEECCccccCCCCCCeEEEEecC-CHHHHHHHHHhh
Confidence 999999999999864 55778887765 8999999998875557899999998 889999999876
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=158.33 Aligned_cols=141 Identities=18% Similarity=0.278 Sum_probs=121.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+......+ +++.+.|.++...+.+. +++++.++.++++++.+.+.|+..|++
T Consensus 207 ~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~r~~l~~~~~~~~~~l~~~g~~ 281 (350)
T TIGR03537 207 RSGMTGYRSGFVAG-DEKLISFLRKLRANFGVASPDFVQAAAKAAWSDD----NHVLERRKIFKRKRDLFIEFFNKVGLE 281 (350)
T ss_pred ccCCccccceeeec-CHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCc----HHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 47999999999999 999999998877643 45557888887777763 567888999999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+.+|+||+|+|+++|... ++.++++.|++ +||.|.||+.|+...++++||+++. +++++++++++|++
T Consensus 282 ~~~~~g~~~~~~~~~~~~------~~~~l~~~L~~-~gv~v~~g~~f~~~~~~~~Ri~~~~-~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 282 YLYPDATFYLWVKVPSGI------DAKDYALRLLE-NGIVVAPGENFGSGEEGYVRVALVP-TLEECEEALRLWER 349 (350)
T ss_pred ccCCCeEEEEEEECCCCC------CHHHHHHHHHH-CCEEEcCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHhc
Confidence 999999999999998643 67899999987 8999999999975557899999985 88999999999875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-23 Score=159.21 Aligned_cols=151 Identities=19% Similarity=0.249 Sum_probs=124.3
Q ss_pred CCCCCceeEEEEEe-cCHHHHHHHHHhhc-----ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 1 DLSLPGFRISVIYS-YNNSVLAAAKKLAR-----FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 1 ~~~~~G~RiG~~i~-~~~~~~~~~~~~~~-----~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
.|++||+|+||+++ .++++++.+.+... .+++|.+.|.++..+|.+. ++++++.++.++++++.+.+.|++
T Consensus 238 ~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~l~~~~~~~~~~~~~l~~~L~~ 314 (398)
T PRK08363 238 VYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGP---MDYLEEYMKKLKERRDYIYKRLNE 314 (398)
T ss_pred ccCCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37999999999997 36667666654432 2578999999999999764 688899999999999999999998
Q ss_pred c-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHH
Q 042816 75 L-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153 (163)
Q Consensus 75 ~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~ 153 (163)
+ |+++.+|+||||+|++++... ..++.+++..+++++||.|.||+.|+..+++|+||+++. +.+++++++++|.
T Consensus 315 ~~~~~~~~p~g~~~~~~~l~~~~----~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~ 389 (398)
T PRK08363 315 IPGISTTKPQGAFYIFPRIEEGP----WKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLP-PVEILEEAMDRFE 389 (398)
T ss_pred CCCCEecCCCeEEEEEEEeccCC----CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHH
Confidence 8 888889999999999987520 014567776776779999999999976557899999986 8899999999999
Q ss_pred HHHHHh
Q 042816 154 RISQTC 159 (163)
Q Consensus 154 ~~~~~~ 159 (163)
+++.+.
T Consensus 390 ~~~~~~ 395 (398)
T PRK08363 390 EFMRER 395 (398)
T ss_pred HHHHHh
Confidence 988653
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-23 Score=158.15 Aligned_cols=137 Identities=20% Similarity=0.283 Sum_probs=116.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+.+.... ++++.+.|.++..++.+ ++++++.++.++++++++.+.| ++.
T Consensus 233 ~~~~~GlRiG~ii~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~l---~~~ 304 (374)
T PRK05839 233 RSSAPGLRSGFIAG-DASILKKYKAYRTYLGCASPLPLQKAAAVAWLD----DEHAEFFRNIYAKNLKLAREIL---GIT 304 (374)
T ss_pred ccCCccceeEEEec-CHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHhc---CCC
Confidence 48999999999999 89999999888653 57888999999888876 4677889999999999988866 333
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC--CCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI--EPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~--~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
.|+||+|+|++++ ++.++++.|++++||.|.||+.|+.. +++|+|||++. +.+++++++++|.+++
T Consensus 305 --~p~gg~fi~~~~~---------~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~l~~l~~~l 372 (374)
T PRK05839 305 --IPPATFYVWLPVD---------NDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVY-DTPKLEKALEIIKTYL 372 (374)
T ss_pred --CCCeeEEEEEeCC---------ChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence 7899999999997 34788998887699999999988753 36899999987 8899999999999887
Q ss_pred H
Q 042816 157 Q 157 (163)
Q Consensus 157 ~ 157 (163)
+
T Consensus 373 ~ 373 (374)
T PRK05839 373 E 373 (374)
T ss_pred h
Confidence 4
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-23 Score=157.42 Aligned_cols=152 Identities=27% Similarity=0.460 Sum_probs=130.4
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
.||+||+|+||+++ ++++++.+..... ..+++.+.|.++..++++. ++++++.++.+.++++.+.+.|+++ |+
T Consensus 239 ~~~~~G~RiG~i~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 314 (393)
T PRK05764 239 AYAMTGWRLGYAAG-PKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGP---QDEVEEMRQAFEERRDLMVDGLNEIPGL 314 (393)
T ss_pred cccCccceeEEEec-CHHHHHHHHHHHhhcccCCChHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 47899999999999 9999999988776 3578999999999999742 5788899999999999999999999 99
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
++.+|+||+|+|++++......+. ++.++++.+++++||.+.||..|+. ++++||+++. +.+++++++++|.+++.
T Consensus 315 ~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~--~~~vRis~~~-~~~~~~~~i~~l~~~~~ 390 (393)
T PRK05764 315 ECPKPEGAFYVFPNVSKLLGKSIT-DSLEFAEALLEEAGVAVVPGIAFGA--PGYVRLSYAT-SLEDLEEGLERIERFLE 390 (393)
T ss_pred cccCCCcceEEEEecccccccccC-CHHHHHHHHHHhCCEEEccccccCC--CCEEEEEecC-CHHHHHHHHHHHHHHHH
Confidence 999999999999999864311111 3588888888778999999999975 7899999997 89999999999999988
Q ss_pred Hhh
Q 042816 158 TCK 160 (163)
Q Consensus 158 ~~~ 160 (163)
+++
T Consensus 391 ~~~ 393 (393)
T PRK05764 391 SLK 393 (393)
T ss_pred hhC
Confidence 654
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=165.80 Aligned_cols=155 Identities=20% Similarity=0.300 Sum_probs=120.5
Q ss_pred CCCCCceeEEEEEecCHH-----HHHHH--------------------------------HHhhcc--cCCChHHHHH--
Q 042816 1 DLSLPGFRISVIYSYNNS-----VLAAA--------------------------------KKLARF--SSVSAPSQNL-- 39 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~-----~~~~~--------------------------------~~~~~~--~~~s~~~q~~-- 39 (163)
+|||||||+||+++ +++ +++.+ +++..+ .++|++.|.+
T Consensus 312 ~f~mtG~RlG~i~~-~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~a 390 (527)
T PRK09275 312 YFGATGWRLGVIAL-HEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMA 390 (527)
T ss_pred hccCcHhHHhhhhc-CchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 58999999999999 554 33222 344442 5788999986
Q ss_pred ---HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCceeEEEeecCCccc---CC-------ChhhHHH
Q 042816 40 ---LVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLIS---SY-------SEKGELE 106 (163)
Q Consensus 40 ---~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~---~~-------~~~~~~~ 106 (163)
+..+++.+ +.+.+.+++.|++|++.+.+.|. .++...+|+|+||+|++++.... +. ...++.+
T Consensus 391 l~~~~all~~~---~~~~~~~~~~~~~Rr~~l~~~Lg-~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~ 466 (527)
T PRK09275 391 LFSLFALLDEE---DAYKKAMKDIIRRRYKALYEGLG-LPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVD 466 (527)
T ss_pred HHHHHHHHhCc---hHHHHHHHHHHHHHHHHHHHHcC-CCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHH
Confidence 33556655 67889999999999999999883 24444689999999999976421 00 0125789
Q ss_pred HHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhhh
Q 042816 107 LWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 107 ~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
|+.+|++++||.+.||+.|+. +++++|||++..+++++.++.++|.+++.++..
T Consensus 467 f~~~Ll~e~gV~v~PG~~Fg~-~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y~~ 520 (527)
T PRK09275 467 LLFRLAEETGVVLLPGGGFGG-PEWSVRVSLANLNEEDYAKIGKAIRKLLDEYYE 520 (527)
T ss_pred HHHHHHhcCCEEEeCchhhCC-CCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999985 368999999976889999999999999987754
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-23 Score=162.04 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=122.5
Q ss_pred CCCCceeEEEEEec--CHHHHHHHHHhhcc-cCCChHHHHHHHHhcCCh-----HHHHH---HHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSY--NNSVLAAAKKLARF-SSVSAPSQNLLVSMLSDT-----KFVQK---FININRERLRRLYVKFVA 70 (163)
Q Consensus 2 ~~~~G~RiG~~i~~--~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~-----~~~~~---~~~~~~~~~~~~~~~l~~ 70 (163)
+|+||+|+||++++ |+++++.+.+.... .+++.+.|.++..+++.+ .+ +. +.+.+++.|++|++++.+
T Consensus 354 ~g~pGlRiGy~~~~~~~~~l~~~l~k~~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y-~~~~~~~~~i~~~~~~r~~~l~~ 432 (534)
T PLN02231 354 YGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESY-ESYMAEKDGILSSLARRAKTLED 432 (534)
T ss_pred ccCCccceEEEEEecCCHHHHHHHHHHHhhhcCCChHHHHHHHHHhCCCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999873 68999999877663 567788899999888752 33 44 345678999999999999
Q ss_pred Hhhhc-CCccccCCceeEEEeec--CCc-ccC---CChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEecCCh
Q 042816 71 GLRQL-GIECAKSNGGFYCWADM--SGL-ISS---YSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTLLTE 142 (163)
Q Consensus 71 ~l~~~-g~~~~~~~~g~~~~~~~--~~~-~~~---~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~~~~ 142 (163)
.|+++ |+++.+|+||||+|+++ |.. +.. .+..++..++..|++++||.+.||+.|+.. +..++|+++.. ++
T Consensus 433 ~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~~-~~ 511 (534)
T PLN02231 433 ALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTILP-QE 511 (534)
T ss_pred HHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeCC-CH
Confidence 99998 99999999999999665 421 000 001134567788888789999999999853 35689999986 89
Q ss_pred hHHHHHHHHHHHHHHHh
Q 042816 143 KDIHVVMERIRRISQTC 159 (163)
Q Consensus 143 ~~l~~~~~~l~~~~~~~ 159 (163)
+++++++++|.+++++.
T Consensus 512 e~l~eal~RL~~~~~~~ 528 (534)
T PLN02231 512 DKIPAIVSRLTEFHKSF 528 (534)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987654
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=155.64 Aligned_cols=144 Identities=19% Similarity=0.242 Sum_probs=124.5
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
+||+||+|+||+++ ++++++.+.+.... .++|.+.|.++..++++. ++++++.++.++++++.+.+.|+.+ ++
T Consensus 237 ~~g~~G~RiG~i~~-~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 312 (386)
T PRK07550 237 SYALTGHRVGAVVA-SPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNL---ADWRAGNRAEIARRRDAFRAVFARLPGW 312 (386)
T ss_pred hccCcccceEeeec-CHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 47899999999999 89999999887763 567999999999999873 7888999999999999999999987 66
Q ss_pred ccccCCceeEEEeecCC-cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSG-LISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
.+. +.||+|+|++++. .. ++.++++.|++++||.|.||..|+...++++||+++..+++++++++++|.++
T Consensus 313 ~~~-~~g~~~~~~~~~~~~~------~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 313 ELL-ASGAYFAYVRHPFPDR------PSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred eeC-CCceEEEEecCCCCCC------CHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 554 6799999999985 43 78899999887789999999999755578999999976888999999999864
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=154.04 Aligned_cols=137 Identities=18% Similarity=0.232 Sum_probs=112.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
+||+||+|+||+++ ++++++.+.+....+++|.+.|.++..+|+++ .+.+..++.++++++.+.+.|+++ |+.+
T Consensus 217 ~~~l~GlRiG~~v~-~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 291 (360)
T PRK07392 217 FYSLPGLRLGYAIA-HPDRLQRWQQWRDPWPVNGLAAAAAIAALADR----DFQQQTWAWLPPAREALFQGLASLPGLTP 291 (360)
T ss_pred hhcCCchheeeeeC-CHHHHHHHHhhCCCCCCCHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 48999999999999 89999999877766889999999999999986 345666778999999999999987 7777
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCCh--hHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTE--KDIHVVMERI 152 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~--~~l~~~~~~l 152 (163)
. +.+|+|+|++++. ++.++++.+++++||.|.||+.|+..+++|+||+++. +. +++.++++++
T Consensus 292 ~-~~~~~fl~~~~~~--------~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~~~l~~al~~~ 356 (360)
T PRK07392 292 L-PSAANFLLVQSQG--------SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT-EAENQRLLEALAAI 356 (360)
T ss_pred C-CCCCCEEEEEcCC--------CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC-HHHHHHHHHHHHHH
Confidence 5 4789999999874 5688998887768999999999975557899999996 32 3455555443
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=154.81 Aligned_cols=156 Identities=19% Similarity=0.277 Sum_probs=117.5
Q ss_pred CCCCCceeEEEEEec-CHH----HHHHHHHhhc-ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 1 DLSLPGFRISVIYSY-NNS----VLAAAKKLAR-FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~-~~~----~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+||+||+|+||++++ +++ +++.+..... .+++|.+.|.++..+|.+.+.++.+++. ++.++++++.+.+.|++
T Consensus 241 ~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~r~~~~~~L~~ 319 (404)
T PRK09265 241 AYRVAGFRVGWMVLSGPKKHAKGYIEGLDMLASMRLCANVPAQHAIQTALGGYQSINELILP-GGRLYEQRDRAWELLNA 319 (404)
T ss_pred hccCcccceEEEEEeCchHHHHHHHHHHHHHhccccCCCcHHHHHHHHHhcCchhHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 478999999999972 444 4444443322 3678999999999999765432334333 35677889999999998
Q ss_pred c-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHH
Q 042816 75 L-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153 (163)
Q Consensus 75 ~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~ 153 (163)
+ |+++.+|+||+|+|++++.... +..++.++...+++++||.|.||+.|+...++++|++++. +.+++++++++|.
T Consensus 320 ~~~~~~~~p~~g~~l~~~~~~~~~--~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~-~~e~l~~~l~rl~ 396 (404)
T PRK09265 320 IPGVSCVKPKGALYAFPKLDPKVY--PIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLP-RVDDLEEAIGRIG 396 (404)
T ss_pred CCCCcccCCCcceEEEEEeccccc--CCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCC-CHHHHHHHHHHHH
Confidence 8 8999999999999999975310 0013445555555669999999999975557899999986 8899999999999
Q ss_pred HHHHHhh
Q 042816 154 RISQTCK 160 (163)
Q Consensus 154 ~~~~~~~ 160 (163)
+++++++
T Consensus 397 ~~l~~~~ 403 (404)
T PRK09265 397 RFLSGYR 403 (404)
T ss_pred HHHHHhc
Confidence 9988654
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-23 Score=158.03 Aligned_cols=142 Identities=28% Similarity=0.489 Sum_probs=128.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||+++ ++++++.+.+....+..+++.|.++..++.+.....+++++.++.++++++.+.+.|++.|+.+.
T Consensus 222 ~~g~~GlRvG~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~ 300 (363)
T PF00155_consen 222 SFGLPGLRVGYIVA-PPELIERLRRFQRSGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGITVL 300 (363)
T ss_dssp TTTSGGGTEEEEEE-EHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred cccccccccccccc-hhhhhhhhhhccccccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhhee
Confidence 48999999999999 99999999999887666999999999999987644569999999999999999999999999999
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
++++|+|+|++++.. ++.++++.|+++.||.+.||..|+. ++++||+++..+++++++++++|
T Consensus 301 ~~~~~~~~~~~~~~~-------~~~~l~~~L~~~~gi~v~pg~~~~~--~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 301 PPEAGFFLWVRLDPN-------DAEELAQELLEEYGILVRPGSYFGV--PGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp HHSBSSEEEEEESHH-------HHHHHHHHHHHHHTEEEEEGGGGTS--TTEEEEEGGCSCHHHHHHHHHHH
T ss_pred eccCccEEEEEcccc-------hHHHHHHHHHHhCCEEEEecCCCCC--CCEEEEEeccCCHHHHHHHHhhC
Confidence 999999999999862 6789999999866999999999987 88999999556999999999886
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=169.23 Aligned_cols=153 Identities=15% Similarity=0.255 Sum_probs=121.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSML-----SDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
.|++||+|+||++++++++++.+.+......+..+.|.++..++ +++.| .+++++.++.|+++++++.+.|+++
T Consensus 911 kf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~-~~~l~e~r~~Lk~rRd~L~e~L~~~ 989 (1082)
T PLN02672 911 ELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDL-LDGVAEQKKILKSRAERLKETLEAC 989 (1082)
T ss_pred hhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 37899999999999556699999887554444445555444433 24555 6788999999999999999999999
Q ss_pred CCccccCCceeEEEeecCCccc------CC----C-hhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhH
Q 042816 76 GIECAKSNGGFYCWADMSGLIS------SY----S-EKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKD 144 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~------~~----~-~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~ 144 (163)
|+++.+|+||||+|++++...+ .. . ..++.++++.|+++.||.|.||+.|+. ++|+||+++. +.++
T Consensus 990 Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~--~g~~RIsfa~-~~e~ 1066 (1082)
T PLN02672 990 GWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI--PGYCRFSFAL-EDSE 1066 (1082)
T ss_pred CCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCC--CCeEEEEecC-CHHH
Confidence 9999999999999998754321 00 0 126789999999877999999988874 7899999997 8899
Q ss_pred HHHHHHHHHHHHH
Q 042816 145 IHVVMERIRRISQ 157 (163)
Q Consensus 145 l~~~~~~l~~~~~ 157 (163)
+++++++|.++.+
T Consensus 1067 LeeALerL~kf~~ 1079 (1082)
T PLN02672 1067 FDRALKAIARFKE 1079 (1082)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998654
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=154.41 Aligned_cols=146 Identities=21% Similarity=0.231 Sum_probs=122.5
Q ss_pred CCCCCceeEEEEEec-----CHHHHHHHHHhh------cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSY-----NNSVLAAAKKLA------RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFV 69 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~-----~~~~~~~~~~~~------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (163)
+|++||+|+||++++ |+++++.+.+.. ..+++|.+.|.++..+|+++.+ .+++++.+..++++++.+.
T Consensus 228 ~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~ 306 (388)
T PRK08637 228 EEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEF-DKEKQEKFQILKERYEKTK 306 (388)
T ss_pred cCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHH
Confidence 479999999999973 368888876421 1357899999999999998876 7888899999999999999
Q ss_pred HHhhhc----CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHH
Q 042816 70 AGLRQL----GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDI 145 (163)
Q Consensus 70 ~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l 145 (163)
+.|+.. ++++.+|+||||+|++++. .++.++++.|++++||.+.+. +++++||+++..+.+++
T Consensus 307 ~~l~~~~~~~~~~~~~~~~g~~~~~~l~~-------~~~~~l~~~l~~~~gv~~~~~------~~~~iRi~~~~~~~~~i 373 (388)
T PRK08637 307 EVLYDGKYDDAWQAYPFNSGYFMCLKLKG-------VDAEELRVHLLEKYGIGTIAL------NETDLRIAFSCVEEEDI 373 (388)
T ss_pred HHHHhhCCCCCcccccccceEEEEecCCh-------HHHHHHHHHHhhhcceEEEec------cCCceEEEeecCCHHHH
Confidence 999775 5788899999999999974 267899999987689998742 26799999998789999
Q ss_pred HHHHHHHHHHHHHhh
Q 042816 146 HVVMERIRRISQTCK 160 (163)
Q Consensus 146 ~~~~~~l~~~~~~~~ 160 (163)
++++++|.++++.++
T Consensus 374 ~~~~~~l~~~~~~~~ 388 (388)
T PRK08637 374 PELFDSIYKAIKDLR 388 (388)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998653
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=153.16 Aligned_cols=139 Identities=14% Similarity=0.265 Sum_probs=118.8
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
+||+||+|+||++++++.+++.+.+....++++.+.|.++..+|+++ +++++.++.++++++.+.+.|+++ |+++
T Consensus 214 ~~gl~G~RiG~lv~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 289 (354)
T PRK06358 214 FFAIPGLRLGYGLTSNKNLAEKLLQMREPWSINTFADLAGQTLLDDK----EYIKKTIQWIKEEKDFLYNGLSEFKGIKV 289 (354)
T ss_pred hccCcchhheeeecCCHHHHHHHHHhCCCCcchHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 48999999999998557899999988877889999999999999764 567888999999999999999988 8888
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
.+|+|+ |+|++++. ..++++.|++ +||.|.||+.|+..+++++||+++ ++++++..++.|.+++
T Consensus 290 ~~~~g~-f~~~~~~~---------~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRls~~--~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 290 YKPSVN-FIFFKLEK---------PIDLRKELLK-KGILIRSCSNYRGLDENYYRVAVK--SREDNKKLLKALEVIL 353 (354)
T ss_pred cCCcce-EEEEEcCc---------hHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 888776 78999873 4789998887 899999999996445789999999 6678888888887654
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=151.78 Aligned_cols=142 Identities=16% Similarity=0.248 Sum_probs=119.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||+++ ++++++.+......++.+++.|.++..++++.. .+++++.++.++++++.+.+.|+++|+++.
T Consensus 205 ~~~l~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 281 (349)
T PRK07908 205 TWSLAGLRVGYALG-APDVLARLTRGRAHWPVGTLQLEAIAACCAPRA--VAEAAADAARLAADRAEMVAGLRAVGARVV 281 (349)
T ss_pred ccCCccceeeeeec-CHHHHHHHHhcCCCCCccHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHHHHHHhCCcEec
Confidence 48999999999999 999999998887778888899998888888542 477889999999999999999998888888
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
+|.+|+|+|++++. ...+.+.|. ++||.|.||+.|+..+++++|||++ ++++++..++.|++++.
T Consensus 282 ~p~~g~~~~~~~~~---------~~~~~~~l~-~~gI~v~~g~~f~~~~~~~vRis~~--~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 282 DPAAAPFVLVRVPD---------AELLRKRLR-ERGIAVRRGDTFPGLDPDYLRLAVR--PRAEVPVLVQALAEILK 346 (349)
T ss_pred cCCCceEEEEECCc---------HHHHHHHHH-hCCEEEEECCCCCCCCCCeEEEEeC--CCccHHHHHHHHHHHHh
Confidence 88999999999983 356666664 5899999999996545789999997 55677777777776653
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=154.95 Aligned_cols=150 Identities=18% Similarity=0.262 Sum_probs=123.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ |+++++.+...... ++++.+.|.++..+|+++ +++++.++.|+++++.+.+.|++.|+.
T Consensus 252 ~~g~~GlRiG~ii~-~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~ 326 (410)
T PRK06290 252 AYNMTGWRLAFVVG-NELIVKAFATVKDNNDSGQFIAIQKAGIYALDHP----EITEKIREKYSRRLDKLVKILNEVGFK 326 (410)
T ss_pred hcCCchhheEeEEe-CHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCc----HHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 47899999999999 99999999888764 456678999999999885 567889999999999999999999999
Q ss_pred cccCCceeEEEeecCCccc-CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec--CChhHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLIS-SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL--LTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~--~~~~~l~~~~~~l~~~ 155 (163)
+.+|+||||+|+++|.... ..+..++.++++.|+++.+|.+.||+.|+ +|+||+++. .+++++++.++.|.+.
T Consensus 327 ~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~----~~lRi~~~~~~~~~~~~~~~~~~l~~~ 402 (410)
T PRK06290 327 AEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG----HFLRFSVTFEAKDEEEEDRILEEIKRR 402 (410)
T ss_pred ecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcccc----CeEEEEEEcccccccchhHHHHHHHHH
Confidence 9999999999999986421 11112678999999987788888988764 699999984 2667788888888887
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+.++
T Consensus 403 ~~~~ 406 (410)
T PRK06290 403 LSDV 406 (410)
T ss_pred Hhhc
Confidence 7654
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=148.61 Aligned_cols=150 Identities=21% Similarity=0.269 Sum_probs=135.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc---ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR---FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-- 75 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 75 (163)
+||+||++++++|++|+++++.+.+... ..++|.++..|...+++++ ..|++.+++.++.|++++.+.|++.
T Consensus 233 tFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G---~~WLd~L~~yl~~N~~~~~~~l~~~~P 309 (388)
T COG1168 233 TFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQG---EPWLDELLEYLKDNRDYVADFLNKHLP 309 (388)
T ss_pred cccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 6999999999999989998777655544 2579999999999999999 7999999999999999999999998
Q ss_pred CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
++++..|+|.|.+|+|+.+.. .++.++.+.++++.+|.+.+|+.|+..+.+++|+++++ +++.+++++++|..+
T Consensus 310 ~v~v~~p~gTYL~WLD~r~l~-----l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~ac-pr~~L~eal~ri~~a 383 (388)
T COG1168 310 GVKVTEPQGTYLAWLDCRELG-----LDDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFAC-PRAILEEALERLKRA 383 (388)
T ss_pred CcEEecCCCceeeeeeccccC-----CChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCC-CHHHHHHHHHHHHHH
Confidence 999999999999999998753 36689999999999999999999998889999999998 999999999999988
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+...
T Consensus 384 l~~~ 387 (388)
T COG1168 384 LKKR 387 (388)
T ss_pred Hhcc
Confidence 7653
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=158.89 Aligned_cols=155 Identities=17% Similarity=0.253 Sum_probs=118.2
Q ss_pred CCCCCceeEEEEEecCHH-----HH--------HHH------------------------HHhhcc--cCCChHHHH---
Q 042816 1 DLSLPGFRISVIYSYNNS-----VL--------AAA------------------------KKLARF--SSVSAPSQN--- 38 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~-----~~--------~~~------------------------~~~~~~--~~~s~~~q~--- 38 (163)
+||+||||+||+++ +++ ++ +.+ +++..+ .++|++.|.
T Consensus 311 ~fg~~G~RlG~i~~-~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~a 389 (521)
T TIGR03801 311 YFGATGWRLGTIAL-HKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMA 389 (521)
T ss_pred hccCchhhhhhhhc-CchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence 48999999999999 543 22 111 333332 467888886
Q ss_pred --HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCceeEEEeecCCcccC-CC---------hhhHHH
Q 042816 39 --LLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISS-YS---------EKGELE 106 (163)
Q Consensus 39 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~-~~---------~~~~~~ 106 (163)
++..++..+ +.+.+.+++.+++|++.+.+.| ...+...+|+|+||+|+++++.... .+ ..++.+
T Consensus 390 l~a~~all~~~---~~y~~~~~~~~~~R~~~l~~~L-g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~ 465 (521)
T TIGR03801 390 LFSLFALMDKE---NAYKAETKDICRRREKLLFRGL-GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVD 465 (521)
T ss_pred HHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHhc-CCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHH
Confidence 345666654 6789999999999999999998 2233346799999999999863210 00 115789
Q ss_pred HHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhhh
Q 042816 107 LWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 107 ~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
|+.+|++++||.+.||..|+.. ++++|||++..++++++++.++|++++.++..
T Consensus 466 ~~~~L~~e~gV~v~PG~~Fg~~-~~~vRisla~l~~~~~~~~~~rl~~~~~~~~~ 519 (521)
T TIGR03801 466 VLFRLAEETGIVLLPGGGFGGP-EWSVRVSLANLNEYDYAEIGRAIRKILDEYYE 519 (521)
T ss_pred HHHHHHHhCCEEEeCchhcCCC-CCeEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999853 67899999966889999999999999988764
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-22 Score=149.91 Aligned_cols=138 Identities=12% Similarity=0.216 Sum_probs=112.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||+++ |+++++.+.+....++.+.+++.++. ...+ +.++++.++.++++++.+.+.|+++|+++.
T Consensus 194 ~~~l~GlRiGy~v~-~~~li~~l~~~~~~~~~~~~~~~~l~----~~~~-~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~ 267 (332)
T PRK06425 194 ILGIPSLRIGYIAT-DDYNMKISRKITEPWSVCDPAIDFIR----SIDL-DYVAKHSLDIMENERSYLINNLEAMGFRAA 267 (332)
T ss_pred hcCCchhhheeeec-CHHHHHHHHHcCCCCccCHHHHHHHH----Hhhh-HHHHHHHHHHHHHHHHHHHHHHHHCCCEEC
Confidence 48999999999999 99999999987766666666554432 2222 567788999999999999999999888876
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
.+.+|.|+|++++ ++.++++.|++ +||.|.||+.|+..+++|+||+++ ++++++..++.|++++
T Consensus 268 ~~~~g~f~~~~~~---------~~~~~~~~l~~-~gi~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 268 GDPSANFITFMIP---------DAHDFYSYLLK-NGILVRLLDDYECLGEQYIRIAIR--RRSFNIKLVNALRNFL 331 (332)
T ss_pred CCCCceEEEEEcC---------CHHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 5556778999987 45789998887 899999999997555689999999 5578888888887764
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.5e-22 Score=150.30 Aligned_cols=140 Identities=18% Similarity=0.210 Sum_probs=114.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
+||+||+|+||+++ |+++++.+.+....++++.+.|.++..+|+++.+ .+..+.++.++++++.+.+.|+++ |+..
T Consensus 221 ~~gl~GlRvGy~v~-~~~l~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 297 (364)
T PRK04781 221 AHALAAARIGSLIA-NAELIAVLRRCQAPYPVPTPCAALAEQALSAPAL--AVTARRVAEVRAERERLHAALAQLPGVRR 297 (364)
T ss_pred hcccccceeeeeeC-CHHHHHHHHhccCCCCCCHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHhCCCCCe
Confidence 48999999999999 9999999999988889999999999999988743 344555567899999999999988 7754
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
..|.+|+|+|++++ +..++.+.|.+ +||.|.||..|.. .++++||+++ ..++++..++.|.++.
T Consensus 298 ~~p~~g~f~~~~~~---------~~~~~~~~l~~-~gI~v~~~~~~~~-~~~~~Ris~~--~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 298 VYPSQGNFLLVRFD---------DAEAAFQALLA-AGVVVRDQRAAPR-LSDALRITLG--TPEQNDRVLAALQRTQ 361 (364)
T ss_pred ECCCCCcEEEEEcC---------CHHHHHHHHHH-CCeEEeeCCCCCC-CCCeEEEeCC--CHHHHHHHHHHHHHHH
Confidence 45788899999987 34677877765 9999999988753 3689999999 4567777777776543
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=145.47 Aligned_cols=154 Identities=17% Similarity=0.269 Sum_probs=132.1
Q ss_pred CCCCceeEEEEEecCH-------HHHHHHHHhhcc-cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042816 2 LSLPGFRISVIYSYNN-------SVLAAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLR 73 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~-------~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 73 (163)
|=.||||+||++..++ .+++.+.+.... .+++++.|.|+..+|+... +++..+....++.+.++.++.|+
T Consensus 273 W~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp--~efF~k~~~~lk~na~l~y~~Lk 350 (447)
T KOG0259|consen 273 WIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTP--EEFFDKKLSFLKSNADLCYSRLK 350 (447)
T ss_pred cccCCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhCh--HHHHHHHHHHHHhhHHHHHHHHh
Confidence 6689999999999432 345666666663 6899999999999998654 68899999999999999999999
Q ss_pred hc-CCc-cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHH
Q 042816 74 QL-GIE-CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMER 151 (163)
Q Consensus 74 ~~-g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~ 151 (163)
.+ ++. ..+|+|.+|+|+.+.-.. -+.++|+.+|+++|.+++.+.+.||..|+. ++|+|++++. +.+.++++.+|
T Consensus 351 ~IP~l~cp~kPeg~mylmv~l~~s~-~~~~~dD~dFc~kL~~Eesv~~LPG~af~~--~nw~Ri~i~~-~~~~leea~~R 426 (447)
T KOG0259|consen 351 DIPCLTCPVKPEGCMYLMVKLNLSL-FPDIEDDVDFCQKLAREESVICLPGQAFGL--KNWLRIVITV-EEEMLEEAFSR 426 (447)
T ss_pred cCCCcccCcCCCcceEEEeccchhh-hccccccHHHHHHHhhhcceEEeccccccC--CCeEEEEEcc-ChHHHHHHHHH
Confidence 99 887 789999999999886321 123358899999999999999999999997 8999999998 88999999999
Q ss_pred HHHHHHHhhh
Q 042816 152 IRRISQTCKS 161 (163)
Q Consensus 152 l~~~~~~~~~ 161 (163)
|+++..++.+
T Consensus 427 ik~Fc~RH~~ 436 (447)
T KOG0259|consen 427 IKEFCDRHSK 436 (447)
T ss_pred HHHHHHhhhh
Confidence 9999998764
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=149.38 Aligned_cols=140 Identities=12% Similarity=0.213 Sum_probs=116.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
.||+||+|+||++++++++++.+.+....++++.+.|.++..+++++ .+.++.++.++++++.+.+.|+.+ |+.+
T Consensus 213 ~~~~~G~RiG~~v~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 288 (356)
T PRK08056 213 FYAIPGLRLGYLVNSDDAAVARMRRQQMPWSINAFAALAGEVILQDR----AYQQATWQWLAEEGARFYQALCALPLLTV 288 (356)
T ss_pred hccCcchhheeeecCCHHHHHHHHHhCCCCchhHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 48999999999998557888888887767788999999999999764 556888999999999999999988 7777
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
.+| +|+|+|++++. ++.++++.|++ +||.|.||+.|....++++||+++ +.++++..++.|.+++
T Consensus 289 ~~~-~~~~~~~~~~~--------~~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~~l~~~~ 353 (356)
T PRK08056 289 WPG-RANYLFLRCER--------PDIDLQRALLT-QRILIRSCANYPGLDSRYYRVAIR--SAAENERLLAALRNVL 353 (356)
T ss_pred cCC-CCcEEEEEcCC--------ChHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEEc--CHHHHHHHHHHHHHHH
Confidence 655 67889999974 45789998886 899999999996555689999998 5577777777777654
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=148.63 Aligned_cols=137 Identities=14% Similarity=0.132 Sum_probs=114.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
+||+||+|+||+++ |+++++.+.+....+++|.+.|.++..++++. +.+.+..++.+++ ++.+.+.|+++ ++.+
T Consensus 235 ~~g~~GlRiG~~v~-~~~l~~~l~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~ 309 (374)
T PRK02610 235 AFRLAAHRVGYAIG-HPELIAVLEKVRLPYNLPSFSQLAAQLALEHR---QELLAAIPEILQE-RDRLYQALQELPQLRV 309 (374)
T ss_pred hccCcccceeeeec-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH---HHHHHHHHHHHHH-HHHHHHHHHhCCCcEe
Confidence 47999999999999 99999999988877888999999999999876 5677777777665 67788999887 7765
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
.|++|+|+|++++... ++.++++.|.+ +||.|.++ ++++||+++. .+++++++++|.+++..+
T Consensus 310 -~p~~g~f~~~~l~~~~------~~~~~~~~l~~-~gi~v~~~-------~~~lRls~~~--~~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 310 -WPSAANFLYLRLSQDA------ALAALHQALKA-QGTLVRHT-------GGGLRITIGT--PEENQRTLERLQAALTQL 372 (374)
T ss_pred -CCCcceEEEEeCCCCC------CHHHHHHHHHH-CCEEEEeC-------CCeEEEeCCC--HHHHHHHHHHHHHHHhhc
Confidence 4788999999998643 67889888765 89999763 4689999985 467899999999988765
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=149.30 Aligned_cols=136 Identities=13% Similarity=0.179 Sum_probs=116.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||+++ ++++++.+.+....+++|.++|.++..+++++ +++++.++.++++++.+.+.|++.|+.+.
T Consensus 223 ~~g~~GlRiG~~v~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (359)
T PRK03158 223 AYGLAALRVGYGIA-SEELIEKLNIARPPFNTTRIAQYAAIAALEDQ----AFLKECVEKNAEGLEQYYAFCKEYGLFYY 297 (359)
T ss_pred hhcCcchhhehhcC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHCCCeeC
Confidence 47899999999999 99999999888777889999999999999875 55677788889999999999988888776
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
+ .+|+|+|++++. ++.++++.|++ +||.|.||+.|+. ++++||+++ ..++++..++.|.++
T Consensus 298 ~-~~g~~i~~~~~~--------~~~~~~~~l~~-~gv~v~~g~~f~~--~~~iRi~~~--~~~~~~~l~~al~~~ 358 (359)
T PRK03158 298 P-SQTNFIFVDTGR--------DANELFEALLK-KGYIVRSGAALGF--PTGVRITIG--LKEQNDKIIELLKEL 358 (359)
T ss_pred C-CcCcEEEEECCC--------CHHHHHHHHHH-CCeEEeeCCCCCC--CCeEEEecC--CHHHHHHHHHHHHHh
Confidence 5 457899999863 57889999886 8999999999964 689999999 567888888888764
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=147.73 Aligned_cols=134 Identities=13% Similarity=0.110 Sum_probs=114.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ |+++++.+.+....++++.+.|.++..+|.+ ++++++.++.++++++.+.+.|...+
T Consensus 223 ~~~~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~~---- 293 (357)
T PRK14809 223 AYGLAGLRLGYAVV-PEEWADAYARVNTPFAASELACRAGLAALDD----DEHVERTVETARWAREYIREELDAPT---- 293 (357)
T ss_pred HhcCcchhheeeec-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHhcCcc----
Confidence 47899999999999 8999999998876778899999999999986 46788889999999999999997642
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
.|.+|+|+|++++ ++.++++.|.+ +||.|.||+.|+. ++++||+++ +.+++++++++|.++++
T Consensus 294 ~~~~g~f~~~~~~---------~~~~~~~~l~~-~gv~v~~g~~f~~--~~~iRls~~--~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 294 WESAGNFVLAEVG---------DASAVAEAAQE-RGVIVRDCTSFGL--PECIRITCG--TREETERAVEVLNEVLA 356 (357)
T ss_pred CCCCCCEEEEECC---------CHHHHHHHHHH-CCEEEEECccCCC--CCeEEEecC--CHHHHHHHHHHHHHHhc
Confidence 2578899999885 45788888754 8999999999974 589999987 56899999999998764
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-21 Score=144.59 Aligned_cols=138 Identities=19% Similarity=0.248 Sum_probs=117.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||+++ |+++++.+.+....+++|.+.|.++..+|+++ .+.++.++.++++++.+.+.|+++|+++.
T Consensus 199 ~~gl~GlRiGy~v~-~~~li~~l~~~~~~~~vs~~~q~a~~~~L~~~----~~~~~~~~~~~~~r~~l~~~L~~~g~~~~ 273 (339)
T PRK06959 199 FFGLAGVRAGFVLA-APALLAALRDALGAWTVSGPARHAVRAAFADA----AWQAAMRERLAADGARLAALLRAHGFAVH 273 (339)
T ss_pred hcCCcchheEEEec-CHHHHHHHHHhcCCCCCcHHHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHHHHHHCCCCcc
Confidence 48999999999999 99999999999888889999999999999986 45678899999999999999999987765
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
.+++|+|++++ ++.++.+.|.+ +||.|++ |+. .+++||+++. ++++++..++.|.++++.+.
T Consensus 274 --~~~~f~~~~~~---------~~~~l~~~l~~-~GI~vr~---~~~--~~~lRisi~~-~~~e~~~l~~al~~~~~~~~ 335 (339)
T PRK06959 274 --ATPLFSWTDDP---------RAAALHAALAR-RGIWTRY---FAP--PPSVRFGLPA-DEAEWQRLEDALAECVPTLA 335 (339)
T ss_pred --CcceEEEEeCC---------CHHHHHHHHHh-CCeEEEE---CCC--CCeEEEECCC-CHHHHHHHHHHHHHHHHHHh
Confidence 36799999986 35678888876 8999984 432 5699999964 66788999999988887765
Q ss_pred h
Q 042816 161 S 161 (163)
Q Consensus 161 ~ 161 (163)
.
T Consensus 336 ~ 336 (339)
T PRK06959 336 A 336 (339)
T ss_pred h
Confidence 4
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-22 Score=151.27 Aligned_cols=152 Identities=17% Similarity=0.288 Sum_probs=126.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHH-----HHHHHHHHHHHHHHHHHHHHHhh
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFV-----QKFININRERLRRLYVKFVAGLR 73 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~ 73 (163)
+||++|||+||+++ |+.+......+... ..++++.|.+.+.++..+.-. ..++..+.+.|+++++.|.+.|.
T Consensus 246 tf~~TGWrlGW~ig-p~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~ 324 (420)
T KOG0257|consen 246 TFGVTGWRLGWAIG-PKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALE 324 (420)
T ss_pred eeeeeeeeeeeeec-hHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999 99999999988884 578999998888777654200 15666799999999999999999
Q ss_pred hcCCccccCCceeEEEeecCC--ccc---C-CChhhHHHHHHHHHHhcCeEEcCCCCCCCCC-----CceEEEEEecCCh
Q 042816 74 QLGIECAKSNGGFYCWADMSG--LIS---S-YSEKGELELWDKLLNVAKVNVTPGSSCHCIE-----PGWFSFSFTLLTE 142 (163)
Q Consensus 74 ~~g~~~~~~~~g~~~~~~~~~--~~~---~-~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~-----~~~iRi~~~~~~~ 142 (163)
+.|+++..|+|+||+|++++. .+. . ....++..++.+++++.|+.+.|++.|+... .+++|+++.. +.
T Consensus 325 ~lg~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k-~~ 403 (420)
T KOG0257|consen 325 ELGLKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCK-AD 403 (420)
T ss_pred hcCCccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHh-hH
Confidence 999999999999999999981 110 0 1112678899999999999999999998643 5689999988 88
Q ss_pred hHHHHHHHHHHH
Q 042816 143 KDIHVVMERIRR 154 (163)
Q Consensus 143 ~~l~~~~~~l~~ 154 (163)
+.++++++++++
T Consensus 404 ~~L~~a~e~l~~ 415 (420)
T KOG0257|consen 404 ETLRKAIERLKK 415 (420)
T ss_pred HHHHHHHHHHhh
Confidence 999999999983
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-21 Score=146.40 Aligned_cols=137 Identities=12% Similarity=0.147 Sum_probs=111.0
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||++++++++++.+.+....+++|.+.|.++..++.+. +++++.++.++++++.+.+.|+++|+.+.
T Consensus 232 ~~~l~GlRiG~~i~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~g~~~~ 307 (371)
T PRK05166 232 AYGLAGLRVGYGLVSDPELVGLLDRVRTPFNVNGAAQAAALAALDDE----EHLAKGVALALAERERLKKELAEMGYRIA 307 (371)
T ss_pred hhhcchhheeeeecCCHHHHHHHHHhccCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHCcCeeC
Confidence 47899999999886578999999887777889999998888888874 56788889999999999999999888764
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
|.+|+|+|++++. ++.++++.|++ +||.|.||..++. ++++||+++. .++++...+.|..+
T Consensus 308 -p~~g~fl~~~~~~--------~~~~l~~~l~~-~gi~v~p~~~~~~--~~~iRi~~~~--~~~~~~l~~~l~~i 368 (371)
T PRK05166 308 -PSRANFLFFDARR--------PASAVAEALLR-QGVIVKPWKQPGF--ETFIRVSIGS--PEENDHFVAALDKV 368 (371)
T ss_pred -CCcCCEEEEeCCC--------CHHHHHHHHHH-CCeEEecCCCCCC--CCeEEEEcCC--HHHHHHHHHHHHHH
Confidence 5678899999864 56889999887 7999999986543 7899999995 34445555555443
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-21 Score=146.90 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=113.0
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-Ccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG-IEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~ 79 (163)
.||+||+|+||+++ ++++++.+.+....++++.+.|.++..+|++. +++++.++.++++++.+.+.|++++ +.+
T Consensus 241 ~~glaGlRiGy~~~-~~~~i~~l~~~~~~~~~~~~~q~aa~~aL~~~----~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 315 (380)
T PLN03026 241 RAGLAGLRVGYGAF-PLSIIEYLWRAKQPYNVSVAAEVAACAALSNP----KYLEDVKNALVEERERLFGLLKEVPFLEP 315 (380)
T ss_pred hhcCccccceeeec-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhhCH----HHHHHHHHHHHHHHHHHHHHHHHCCCCeE
Confidence 48999999999999 99999999988888889999999999999874 5678889999999999999999985 444
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
.|.+|+|+|++++... ++.++++.|++ +||.|+++..++ .++++|||++. .++++..++.|.+
T Consensus 316 -~p~~~~f~~~~~~~~~------~~~~~~~~l~~-~gI~v~~~~~~~--~~~~lRis~~~--~~~~~~l~~al~~ 378 (380)
T PLN03026 316 -YPSDANFILCRVTSGR------DAKKLKEDLAK-MGVMVRHYNSKE--LKGYIRVSVGK--PEHTDALMEALKQ 378 (380)
T ss_pred -CCCCCeEEEEECCCCC------CHHHHHHHHHH-CCeEEEECCCCC--CCCEEEEecCC--HHHHHHHHHHHHH
Confidence 5788999999998532 67889998885 899999987643 36799999994 4555555555543
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-21 Score=146.40 Aligned_cols=140 Identities=27% Similarity=0.465 Sum_probs=114.8
Q ss_pred CCCCCceeEEEEEecCHHHHH------HHHHhhc---ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYNNSVLA------AAKKLAR---FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~------~~~~~~~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
+||+||+|+||+++ ++++.+ .+..... .++++.+.|.++..+++++. .++.|+++++.+.+.
T Consensus 245 ~~~~pGlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--------~~~~~~~~r~~l~~~ 315 (394)
T PRK06836 245 SLSLPGERIGYIAV-NPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATV--------DVSIYKRNRDLLYDG 315 (394)
T ss_pred hccCcceeeEEEec-CHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCChH--------HHHHHHHHHHHHHHH
Confidence 47899999999999 776533 2221222 24688899999999998751 256788899999999
Q ss_pred hhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHH
Q 042816 72 LRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMER 151 (163)
Q Consensus 72 l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~ 151 (163)
|+++|+.+.+|+||||+|+++|.. ++.++++.|.+ +||.|.||+.|+. ++++||+++. +++++++++++
T Consensus 316 L~~~g~~~~~~~gg~~~~~~~~~~-------~~~~~~~~l~~-~gv~v~~g~~f~~--~~~iRi~~~~-~~~~~~~~i~~ 384 (394)
T PRK06836 316 LTELGFECVKPQGAFYLFPKSPEE-------DDVAFCEKAKK-HNLLLVPGSGFGC--PGYFRLSYCV-DTETIERSLPA 384 (394)
T ss_pred HHhCCCEeecCCceEEEEEeCCCC-------CHHHHHHHHHh-CCEEEECchhcCC--CCeEEEEecC-CHHHHHHHHHH
Confidence 999999999999999999998862 56788877755 8999999999974 5899999995 99999999999
Q ss_pred HHHHHHHhh
Q 042816 152 IRRISQTCK 160 (163)
Q Consensus 152 l~~~~~~~~ 160 (163)
|.+++++++
T Consensus 385 l~~~l~~~~ 393 (394)
T PRK06836 385 FEKLAKEYK 393 (394)
T ss_pred HHHHHHHhc
Confidence 999998875
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-21 Score=142.91 Aligned_cols=155 Identities=21% Similarity=0.241 Sum_probs=128.1
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHHHHHHHHHhhhc---
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDT---KFVQKFININRERLRRLYVKFVAGLRQL--- 75 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~--- 75 (163)
.||+|+||+++ ++.+++.+...... .++|.+.|.++-++|+.- .| -+|+.+.+..|.+|++++..+|.+.
T Consensus 298 aPGlRlG~it~-~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~-~~wi~~l~~~Yt~Rrn~~l~Al~kylp~ 375 (472)
T KOG0634|consen 298 APGLRLGWITG-NSLFLKRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGF-LRWIQHLRSSYTERRNALLSALDKYLPK 375 (472)
T ss_pred cCcceeEEeec-CHHHHHHHhhhcceeecCcccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 69999999999 88888888877774 579999999998888752 23 5899999999999999999999997
Q ss_pred C-CccccCCceeEEEeecCCccc---CCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-C----CceEEEEEecCChhHHH
Q 042816 76 G-IECAKSNGGFYCWADMSGLIS---SYSEKGELELWDKLLNVAKVNVTPGSSCHCI-E----PGWFSFSFTLLTEKDIH 146 (163)
Q Consensus 76 g-~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~----~~~iRi~~~~~~~~~l~ 146 (163)
+ +++.+|.||+|+|++++ ++. +++....+++...++.++||.+.+|+.|... . +-++|++++..+.|+++
T Consensus 376 ~~~~~~~P~aGmFiwv~i~-~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~ 454 (472)
T KOG0634|consen 376 SVCEYHPPKAGMFIWVEIP-YINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLD 454 (472)
T ss_pred CeeEEecCCcceEEEEEec-ccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHH
Confidence 5 89999999999999998 221 1222236677777777799999999999754 2 23999999988999999
Q ss_pred HHHHHHHHHHHHhhh
Q 042816 147 VVMERIRRISQTCKS 161 (163)
Q Consensus 147 ~~~~~l~~~~~~~~~ 161 (163)
++++++..+++++-.
T Consensus 455 ~g~~rf~~~ike~f~ 469 (472)
T KOG0634|consen 455 EGIERFGSVIKEHFI 469 (472)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987643
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-21 Score=147.53 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=117.4
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ ++++++.+.+....+++|.++|.++..+|+++ ++.+..++.+.++++.+.+.++.+|+++.
T Consensus 223 ~~~l~GlRiG~~i~-~~~~~~~l~~~~~~~~~~~~~q~aa~~~l~~~----~~~~~~~~~~~~~r~~~~~~l~~~g~~~~ 297 (366)
T PRK01533 223 AYGLASFRVGYAVG-HEELIEKLNVVRLPFNVSSLAQKAATIAFGDD----EFIEEIVRVNTEGLRQYESFCKENEIPFY 297 (366)
T ss_pred HhcChHHHHhHHhC-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHhCCCccC
Confidence 48999999999999 89999999988777899999999999999875 55667778888888889999988899988
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+|+|+ |+|++++ ++.++.+.|++ +||.|++ | ++++||+++ +.++++..++.|+++++..+
T Consensus 298 ~~~~n-f~~~~~~---------~~~~~~~~l~~-~GI~Vr~---~----~~~iRis~~--~~~~~~~l~~al~~~~~~~~ 357 (366)
T PRK01533 298 QSQTN-FIFLPVE---------NGGEIYEACAH-AGFIIRP---F----PNGVRITVG--TREQNEGVISVLQQHFENKK 357 (366)
T ss_pred CCcCc-EEEEeCC---------CHHHHHHHHHH-CCcEEcc---C----CCceEEeCC--CHHHHHHHHHHHHHHHHhcc
Confidence 88655 7999986 34678888876 9999998 3 478999999 66899999999999988776
Q ss_pred hcC
Q 042816 161 SHS 163 (163)
Q Consensus 161 ~~~ 163 (163)
+.|
T Consensus 358 ~~~ 360 (366)
T PRK01533 358 RKS 360 (366)
T ss_pred ccc
Confidence 654
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=143.08 Aligned_cols=140 Identities=18% Similarity=0.237 Sum_probs=119.5
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ ++++++.+.+....++.|.+.|.++..++++. .++++.++.++++++.+.+.|++.|+.+.
T Consensus 226 ~~g~~G~RiG~l~~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 300 (367)
T PRK02731 226 AYGLAGLRVGYGIA-PPEIIDALNRVRQPFNVNSLALAAAVAALDDD----AFVEKSRALNAEGMAWLTEFLAELGLEYI 300 (367)
T ss_pred hhcCcccceeeeeC-CHHHHHHHHHccCCCCCCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHCCCccC
Confidence 37899999999999 89999999988777788999999999999874 56788899999999999999999888877
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
|.+|+|+|++++... ++.++++.|.+ +||.|.|+..|+. ++++||+++ +.++++..++.|.+++.
T Consensus 301 -~~~g~~~~i~~~~~~------~~~~~~~~L~~-~gI~v~~~~~~~~--~~~iRis~~--~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 301 -PSVGNFILVDFDDGK------DAAEAYQALLK-RGVIVRPVAGYGL--PNALRITIG--TEEENRRFLAALKEFLA 365 (367)
T ss_pred -CCCceEEEEECCCCC------CHHHHHHHHHH-CCEEEEeCCCCCC--CCeEEEecC--CHHHHHHHHHHHHHHHh
Confidence 456789999996543 67899998876 8999999988863 689999998 55788998888887754
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=142.27 Aligned_cols=144 Identities=13% Similarity=0.143 Sum_probs=120.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ |+++++.+.+....+++|.+.|.++..+|+++ +++++.++.++++++.+.+.|++.|+++.
T Consensus 224 ~~g~~GlRiG~~v~-~~~~~~~l~~~~~~~~~s~~~q~~~~~~l~~~----~~~~~~~~~~~~~r~~~~~~L~~~g~~~~ 298 (369)
T PRK08153 224 AYGLAGARVGYAIG-APGTIKAFDKVRNHFGMNRIAQAAALAALKDQ----AYLAEVVGKIAAARDRIAAIARANGLTPL 298 (369)
T ss_pred hccCcchheeeeec-CHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHCCCccC
Confidence 47999999999999 89999999988877889999999999999874 56778899999999999999998888755
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc-CCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT-PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~-pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
|.+++|+|++++... ..+..+.++|++ +||.|. |+... .++++||+++ ++++++..++.|.+++..+
T Consensus 299 -p~~~~f~~~~~~~~~-----~~a~~l~~~l~~-~Gi~v~~p~~~~---~~~~iRis~~--~~~~~~~~~~al~~~~~~~ 366 (369)
T PRK08153 299 -PSATNFVAIDCGRDG-----AFARAVLDGLIA-RDIFVRMPGVAP---LDRCIRVSCG--PDEELDLFAEALPEALEAA 366 (369)
T ss_pred -CCcCcEEEEECCCCc-----ccHHHHHHHHHH-CCeEEeeCCCCC---CCCeEEEecC--CHHHHHHHHHHHHHHHHHh
Confidence 688999999986310 256788988886 899995 66532 2579999999 6689999999999998766
Q ss_pred hh
Q 042816 160 KS 161 (163)
Q Consensus 160 ~~ 161 (163)
++
T Consensus 367 ~~ 368 (369)
T PRK08153 367 RK 368 (369)
T ss_pred hc
Confidence 54
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-20 Score=141.45 Aligned_cols=151 Identities=15% Similarity=0.202 Sum_probs=123.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc-ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR-FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 78 (163)
.||+||+|+||+++ ++++++.+..... .++++.+.|.++...+... ++++++.++.++++++.+.+.|+++ |+.
T Consensus 226 ~~g~~G~RiG~i~~-~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 301 (380)
T PRK06225 226 IFGMAGLRIGAVVA-TPDLIEVVKSIVINDLGTNVIAQEAAIAGLKVK---DEWIDRIRRTTFKNQKLIKEAVDEIEGVF 301 (380)
T ss_pred hcCCccceeEEEec-CHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHhCcCCc
Confidence 37899999999999 8999999887754 4678899999988888764 5677888889999999999999986 643
Q ss_pred c-ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 79 C-AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+ ..|.+|+|+|++++..- .+..++++.|.+ +||.+.||+.|+.. +++++|++++. +++++++++++|.+++
T Consensus 302 ~~~~~~~g~~~~~~~~~~~-----~~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~~iR~s~~~-~~e~l~~~~~~l~~~~ 374 (380)
T PRK06225 302 LPVYPSHGNMMVIDISEAG-----IDPEDLVEYLLE-RKIFVRQGTYTSKRFGDRYIRVSFSI-PREQVEVFCEEFPDVV 374 (380)
T ss_pred cccCCCCCeEEEEEccccc-----CCHHHHHHHHHH-CCEEEcCCcccCcCCCCceEEEEeCC-CHHHHHHHHHHHHHHH
Confidence 3 24567788899986420 267889998885 89999999877532 36799999997 8899999999999999
Q ss_pred HHhhhc
Q 042816 157 QTCKSH 162 (163)
Q Consensus 157 ~~~~~~ 162 (163)
++++++
T Consensus 375 ~~~~~~ 380 (380)
T PRK06225 375 ETLRTS 380 (380)
T ss_pred HHhhcC
Confidence 988753
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-20 Score=143.38 Aligned_cols=136 Identities=17% Similarity=0.297 Sum_probs=110.1
Q ss_pred CCCCCceeEEEEE--ecCHHHHH----HHHHhhc--ccCCChHHHHHHHHhcCChHHHHH---HHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIY--SYNNSVLA----AAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQK---FININRERLRRLYVKFV 69 (163)
Q Consensus 1 ~~~~~G~RiG~~i--~~~~~~~~----~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~l~ 69 (163)
+|++||||+||++ ++++++++ .+.+... .++++.+.|.++..+|+++.+.+. +++++++.|+++++.+.
T Consensus 270 ~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~ 349 (423)
T PLN02397 270 NMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLY 349 (423)
T ss_pred cCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999995 43666554 3444443 246788899999999998754333 47889999999999999
Q ss_pred HHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHH
Q 042816 70 AGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDI 145 (163)
Q Consensus 70 ~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l 145 (163)
+.|+++| +++..|+||||+|++++ .+++++|++++||.|.+ .+ ||+++..+.+++
T Consensus 350 ~~L~~~~~~~~~~~~~p~gg~fl~~~l~-----------~~~~~~Ll~~~~V~v~~--------~~--Ri~~~~~~~~~i 408 (423)
T PLN02397 350 DALEARGSPGDWSHITKQIGMFSFTGLN-----------KEQVDRMTKEYHIYMTR--------DG--RISMAGLSSKNV 408 (423)
T ss_pred HHHHhcCCCCCCCcccCCceEEEecCCC-----------HHHHHHHHHhCCEEECC--------CC--eEEEeeCCHHHH
Confidence 9999987 78888999999999875 34889999989999973 22 999986699999
Q ss_pred HHHHHHHHHHHH
Q 042816 146 HVVMERIRRISQ 157 (163)
Q Consensus 146 ~~~~~~l~~~~~ 157 (163)
++++++|.++++
T Consensus 409 ~~~~~~i~~~~~ 420 (423)
T PLN02397 409 PYLADAIHAVVT 420 (423)
T ss_pred HHHHHHHHHHHh
Confidence 999999999975
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=140.81 Aligned_cols=134 Identities=18% Similarity=0.301 Sum_probs=111.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-Ccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG-IEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~ 79 (163)
+||+||+|+||+++ ++++++.+......+++|+++|.++..+++++ .+.++.++.++++++.+.+.|++++ +++
T Consensus 195 ~~g~~G~R~G~i~~-~~~~~~~l~~~~~~~~~s~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 269 (330)
T TIGR01140 195 FFGLAGLRLGFVVA-HPALLARLREALGPWTVNGPARAAGRAALADT----AWQAATRARLAAERARLAALLARLGGLEV 269 (330)
T ss_pred hhcCchhhhhheeC-CHHHHHHHHhcCCCCCchHHHHHHHHHHHhch----HHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 47899999999999 89999999988777788999999999999976 4456788999999999999999995 665
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
. |.+|+|+|++++ ++.+++++|++ +||.+.||..|...+++++||++++ +.++ +.+++.|
T Consensus 270 ~-~~~~~f~~~~~~---------~~~~l~~~l~~-~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~-~~~~~~l 329 (330)
T TIGR01140 270 V-GGTALFLLVRTP---------DAAALHEALAR-RGILIRDFDNFPGLDPRYLRFALPT-DEEN-DRLEEAL 329 (330)
T ss_pred C-CCCCeEEEEEcC---------CHHHHHHHHHH-CCEEEEECCCCCCCCCCEEEEEecC-HHHH-HHHHHhh
Confidence 4 567899999987 35789999987 8999999999964456899999996 4433 5555544
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-20 Score=141.65 Aligned_cols=135 Identities=21% Similarity=0.314 Sum_probs=108.5
Q ss_pred CCCCCceeEEEE---EecCHHHHHHH----HHhhc-c-cCCChHHHHHHHHhcCChHHHH---HHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVI---YSYNNSVLAAA----KKLAR-F-SSVSAPSQNLLVSMLSDTKFVQ---KFININRERLRRLYVKF 68 (163)
Q Consensus 1 ~~~~~G~RiG~~---i~~~~~~~~~~----~~~~~-~-~~~s~~~q~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l 68 (163)
+|++||+|+||+ ++ |+++++.+ .+... . .+++.+.|.++..+|+++.+.+ +++++.++.|+++++.+
T Consensus 252 ~~~~~GlRvG~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l 330 (404)
T PTZ00376 252 NMGLYGERIGALHIVCA-NKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLL 330 (404)
T ss_pred cccccccccceEEEEeC-CHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999998 45 77765544 33322 3 3567899999999999875433 44677888999999999
Q ss_pred HHHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhH
Q 042816 69 VAGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKD 144 (163)
Q Consensus 69 ~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~ 144 (163)
.+.|++++ +++..|+||||+|++++ .+++++|++++||.+.|| + ||+++..+.++
T Consensus 331 ~~~L~~~~~~~~~~~~~p~gg~f~~~~~~-----------~~~~~~L~~~~~v~v~p~--------~--Ris~~~~~~~~ 389 (404)
T PTZ00376 331 YDELKALGSPGDWEHIINQIGMFSFTGLT-----------KEQVERLIEKYHIYLLDN--------G--RISVAGLTSKN 389 (404)
T ss_pred HHHHHhcCCCCcccccccCceEEEecCCC-----------HHHHHHHHHhCCEeecCC--------C--eEEEeccCHHh
Confidence 99999874 45668999999999875 467888998779999997 1 99998568899
Q ss_pred HHHHHHHHHHHHH
Q 042816 145 IHVVMERIRRISQ 157 (163)
Q Consensus 145 l~~~~~~l~~~~~ 157 (163)
+++++++|.+++.
T Consensus 390 ~~~~~~~l~~~~~ 402 (404)
T PTZ00376 390 VDYVAEAIHDVVR 402 (404)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998865
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-20 Score=140.91 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=114.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ ++++++.+.+....++.+.+.|.++..++++. +++++.++.++++++.+.+.|+ +.+.
T Consensus 224 ~~g~~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~----~~~~~~~~~~~~~r~~l~~~l~---~~~~ 295 (361)
T PRK00950 224 VFGLAGLRIGYGFV-PEWLIDYYMRAKTPFSLTRLSQAAAIAALSDK----EYIEKSIEHGIKSREYLYNELP---FKVY 295 (361)
T ss_pred hhcCchhhcchhcC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHhhcC---eeEC
Confidence 47899999999999 99999999988877788999999999999874 5567788888899999888876 4443
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
|.+|+|+|++++. .++.++++.|.+ +||.|.||..|+..+++++||+++ +.++++++++.|++++
T Consensus 296 -~~~~~~i~~~~~~-------~~~~~~~~~l~~-~gv~v~~~~~f~~~~~~~lRis~~--~~~~~~~l~~~L~~il 360 (361)
T PRK00950 296 -PSEANFVLVDVTP-------MTAKEFCEELLK-RGVIVRDCTSFRGLGDYYIRVSIG--TFEENERFLEILKEIV 360 (361)
T ss_pred -CCcceEEEEECCC-------CCHHHHHHHHHH-CCEEEeeCCccCCCCCCeEEEECC--CHHHHHHHHHHHHHHh
Confidence 5678899999953 267899999986 899999999887555789999998 5578899999888765
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=142.39 Aligned_cols=136 Identities=16% Similarity=0.225 Sum_probs=112.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECA 80 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 80 (163)
||+||+|+||+++ ++++++.+......++++.+.|.++..++++. +++++.++.++++++.+.+.|+.. |+.+.
T Consensus 219 ~~~~GlRiG~~i~-~~~~i~~~~~~~~~~~~~~~~q~~a~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 293 (356)
T PRK04870 219 LGLAGLRLGYLAG-HPAWIAELDKVRPPYNVNVLTQATALFALEHV----DVLDAQAAQLRAERTRLAAALAALPGVTVF 293 (356)
T ss_pred hhhHHHhhhhhhC-CHHHHHHHHHccCCCcCCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHHHhCCCcEEC
Confidence 5899999999999 89999999888777789999999998998864 346788888999999999999988 88765
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
|.+|+|+|++++ ++.++++.|.+ +||.|.||..|+...++++||+++ ..++++..++.|.++
T Consensus 294 -~~~~~~~~~~~~---------~~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~ 355 (356)
T PRK04870 294 -PSAANFILVRVP---------DAAAVFDGLKT-RGVLVKNLSGMHPLLANCLRVTVG--TPEENAQFLAALKAA 355 (356)
T ss_pred -CCCCeEEEEECC---------CHHHHHHHHHH-CCEEEEECCCCCCCCCCeEEEeCC--CHHHHHHHHHHHHHh
Confidence 566779999987 34677877654 999999999997555789999999 457777777777654
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=137.30 Aligned_cols=141 Identities=21% Similarity=0.335 Sum_probs=120.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-c
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE-C 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~-~ 79 (163)
.||+||+|+||+++ ++++++.+.+.+.+|++|.++|.++..++.+. +++++.++...+.++.+.+.|+.+|+. +
T Consensus 213 a~gLAGlRlGy~ia-~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~----~~~~~~~~~~~~~r~rl~~~l~~~~~~~v 287 (356)
T COG0079 213 AFGLAGLRVGYAIA-NPELIAALNKVRPPFNVSSPALAAAIAALRDA----DYLEESVERIREERERLYAALKALGLFGV 287 (356)
T ss_pred hhhcchhceeeccC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHcccH----HHHHHHHHHHHHHHHHHHHHHHhCCCCee
Confidence 38999999999999 99999999999999999999999999999995 778899999999999999999999855 6
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
.++. +.|++++++. . .+..+.+.|++ +||.|+++.. ....++|+||+++ ++++.+..++.|.+++..
T Consensus 288 ~pS~-aNFvlv~~~~-~------~~~~l~~~L~~-~giivR~~~~-~~~~~~~lRitvg--t~een~~ll~AL~~~~~~ 354 (356)
T COG0079 288 FPSQ-ANFVLVRVPD-A------EAAALAEALLK-KGILVRDCSS-VGLLPGYLRITVG--TPEENDRLLAALREVLKG 354 (356)
T ss_pred cCCC-CcEEEEECCC-c------cHHHHHHHHHH-CCEEEEeCCC-CCCCCCeEEEEeC--CHHHHHHHHHHHHHHHhc
Confidence 6555 6688889885 1 25678888887 8999999866 4445789999999 556779999999887754
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-19 Score=133.86 Aligned_cols=132 Identities=23% Similarity=0.331 Sum_probs=105.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ |+++++.+.+....++.|.+.|.++..+|.+. .+.++.++.+.++++.+.+.|+++|++
T Consensus 193 ~~gl~GlRiG~~v~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~r~~l~~~L~~~~~~-- 265 (330)
T PRK05664 193 FFGLAGARLGFVLA-EPALLRALAELLGPWTVSGPTRWLAQAALADT----PWQRRQRERLLAASQRLAALLRRHGLT-- 265 (330)
T ss_pred cccCCCcceEEEEe-CHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCh----HHHHHHHHHHHHHHHHHHHHHHHCCCc--
Confidence 48999999999999 89999999988777788999999999999875 345678999999999999999998764
Q ss_pred cCCce--eEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 81 KSNGG--FYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 81 ~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
|.+| +|+|++++ ++.++++.|.+ +||.|.+ |. .++++||+++. +.+++++..+.|+++.
T Consensus 266 -~~~~~~~f~~~~~~---------~~~~~~~~l~~-~gi~v~~---f~--~~~~iRis~~~-~~~~~~~l~~al~~~~ 326 (330)
T PRK05664 266 -PAGGCALFQWVRTE---------DAAALHEFLAR-RGILTRL---FE--QPASLRFGLPA-DEADWARLDQALLAYR 326 (330)
T ss_pred -ccCCcceEEEEecC---------CHHHHHHHHHH-CCeEEEE---CC--CCCeEEEECCC-CHHHHHHHHHHHHHHH
Confidence 3445 78888875 46788888765 8999974 54 25799999995 4555565555555443
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-19 Score=135.72 Aligned_cols=139 Identities=15% Similarity=0.245 Sum_probs=113.5
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc---cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF---SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
+||+||+|+||+++ ++++++.+...... ++++.+.|.++..++.+. ++.++.++.+.++++.+.+.|+++|+
T Consensus 211 ~~~~~GlR~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~ 285 (353)
T PRK05387 211 SRSLAGLRVGFAIG-HPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDE----AYFEETRAKVIATRERLVEELEALGF 285 (353)
T ss_pred hhcchhhhceeeec-CHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 47899999999999 99999999887752 468899999999999875 45667888899999999999999888
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
++. |.+|+|+|++++.. ++.++++.|.+ +||.|.+.... ..++++||+++ +.++++.+++.|.+++.
T Consensus 286 ~~~-~~~~~~~~~~~~~~-------~~~~~~~~l~~-~gi~v~~~~~~--~~~~~iRis~~--~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 286 EVL-PSKANFVFARHPSH-------DAAELAAKLRE-RGIIVRHFNKP--RIDQFLRITIG--TDEEMEALVDALKEILA 352 (353)
T ss_pred eEC-CCcCcEEEEECCCC-------CHHHHHHHHHH-CCEEEEECCCC--CCCCeEEEEeC--CHHHHHHHHHHHHHHhh
Confidence 765 56788999998742 67899998876 89999753211 23689999998 55889999999988764
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-20 Score=140.32 Aligned_cols=136 Identities=13% Similarity=0.193 Sum_probs=112.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
.||+||+|+||+++ ++++++.+.+....+++|.+.|.++..+|.+.. .+++++.++.+.++++.+.+.|+++ |++.
T Consensus 214 ~~glaGlRiGy~i~-~~~~i~~l~~~~~~~~v~~~~~~~a~~~L~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 290 (351)
T PRK01688 214 AFALAGLRCGFTLA-NEEVINLLLKVIAPYPLSTPVADIAAQALSPQG--IAAMRERVAEINANRQWLIAALKEIPCVEQ 290 (351)
T ss_pred hhcCHHHHHhHHhC-CHHHHHHHHhccCCCCCCHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHhCCCCCe
Confidence 38999999999999 999999999988888899999998989998653 3567888888999999999999998 6754
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
..|.++.|+|++++ ++.++.+.|++ +||.|+++..|.. .++|+||+++ +.++++..++.|
T Consensus 291 ~~ps~~nfi~~~~~---------~~~~l~~~L~~-~gi~vr~~~~~~~-~~~~iRis~~--~~~e~~~l~~al 350 (351)
T PRK01688 291 VFDSETNYILARFT---------ASSAVFKSLWD-QGIILRDQNKQPG-LSNCLRITIG--TREECQRVIDAL 350 (351)
T ss_pred ECCCCCcEEEEEcC---------CHHHHHHHHHH-CCeEEEECCCcCC-CCCeEEEeCC--CHHHHHHHHHhh
Confidence 45667889999886 35788888886 8999998766532 2689999999 557878777765
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-19 Score=135.82 Aligned_cols=135 Identities=17% Similarity=0.321 Sum_probs=111.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ ++++++.+... ..++++.+.|.++..+|.+. ++++..++.++++++.+.+.|++.|+++.
T Consensus 234 ~~g~~GlRiG~~v~-~~~~i~~l~~~-~~~~~~~~~~~aa~~~L~~~----~~~~~~~~~~~~~r~~l~~~L~~~g~~~~ 307 (370)
T PRK09105 234 LYGMAGMRLGLAAA-RPDLLAKLARF-GHNPLPVPAAAAGLASLRDP----KLVPQRRAENAAVREDTIAWLKKKGYKCT 307 (370)
T ss_pred hhcCCccceeeeec-CHHHHHHHHhc-CCCCcCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHHHHCCCCcC
Confidence 47999999999999 99999999877 45568889999999999874 67888899999999999999999999999
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+|+|+||+ ++++. ++.++++.|++ +||.| |..|. ..++++||+++ ++++++..++.|.+++
T Consensus 308 ~~~~~f~~-~~~~~--------~~~~l~~~L~~-~gI~v--~~~~~-~~~~~~Ris~~--~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 308 PSQANCFM-VDVKR--------PAKAVADAMAK-QGVFI--GRSWP-IWPNWVRVTVG--SEEEMAAFRSAFAKVM 368 (370)
T ss_pred CCCCcEEE-EeCCC--------CHHHHHHHHHH-CCcEE--ecCCC-CCCCeEEEEcC--CHHHHHHHHHHHHHHh
Confidence 99998874 77762 66899999987 69998 44453 23789999999 4567777777776654
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-19 Score=135.83 Aligned_cols=135 Identities=12% Similarity=0.172 Sum_probs=106.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
+||+||+|+||+++ |+++++.+...+..++++.+.|.++..+++++ ++++..+.+.++++.+.+.|++. |+.+
T Consensus 214 ~~~~~GlRiG~~v~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-----~~~~~~~~~~~~r~~l~~~l~~~~g~~~ 287 (351)
T PRK14807 214 AFGLAGLRVGYAVA-NENILKYLNLVKSPYNINSLSQVIALKVLRTG-----VLKERVNYILNERERLIKELSKIPGIKV 287 (351)
T ss_pred hcccchhceeeeec-CHHHHHHHHHccCCCCcCHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 47899999999999 99999999988777788999999999999864 23455566788888999999887 8877
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
.+ .+|+|+|++++ ++..+++.|++ +||.|.++..+. ..++++||+++. .++++..++.|+++
T Consensus 288 ~~-~~~~~~~i~~~---------~~~~~~~~l~~-~gV~v~~~~~~~-~~~~~iRis~~~--~~~~~~l~~~l~~~ 349 (351)
T PRK14807 288 YP-SKTNFILVKFK---------DADYVYQGLLE-RGILVRDFSKVE-GLEGALRITVSS--CEANDYLINGLKEL 349 (351)
T ss_pred Cc-CCccEEEEEcC---------CHHHHHHHHHH-CCEEEEECCCCC-CCCCeEEEEcCC--HHHHHHHHHHHHHh
Confidence 65 55778999987 35778887776 899999865432 236899999994 46667777777654
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-19 Score=136.65 Aligned_cols=134 Identities=21% Similarity=0.338 Sum_probs=106.8
Q ss_pred CCCCCceeEEEEEe--cCHHH----HHHHHHhhc--ccCCChHHHHHHHHhcCChHH---HHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYS--YNNSV----LAAAKKLAR--FSSVSAPSQNLLVSMLSDTKF---VQKFININRERLRRLYVKFV 69 (163)
Q Consensus 1 ~~~~~G~RiG~~i~--~~~~~----~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l~ 69 (163)
+|++||+|+||+++ ++++. +..+..... .++++.+.|.+++.++.++.+ .+++++++++.|+++++.+.
T Consensus 247 ~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~ 326 (396)
T PRK09257 247 NFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLV 326 (396)
T ss_pred cCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999983 35443 344434332 345789999999999998743 26788999999999999999
Q ss_pred HHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHH
Q 042816 70 AGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDI 145 (163)
Q Consensus 70 ~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l 145 (163)
+.|++++ +++..|+||||+|++++ .+++..|++++||.+.|. + ||+++..+++++
T Consensus 327 ~~L~~~~~~~~~~~~~p~gg~~~w~~l~-----------~~~~~~l~~~~~V~~~p~--------~--ri~~~~~~~~~i 385 (396)
T PRK09257 327 EALKAKGPSRDFDFIARQRGMFSYSGLT-----------PEQVDRLREEFGVYAVGS--------G--RINVAGLNESNI 385 (396)
T ss_pred HHHHhcCCCCCcccccccceEEEecCCC-----------HHHHHHHHHcCCEEEcCC--------C--eEEEeeCCHHHH
Confidence 9999884 67889999999999886 235566777799999872 2 999986799999
Q ss_pred HHHHHHHHHH
Q 042816 146 HVVMERIRRI 155 (163)
Q Consensus 146 ~~~~~~l~~~ 155 (163)
++++++|.++
T Consensus 386 ~~~~~~i~~~ 395 (396)
T PRK09257 386 DYVAEAIAAV 395 (396)
T ss_pred HHHHHHHHhh
Confidence 9999999875
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.1e-19 Score=132.56 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=107.0
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ |+++++.+.+.+..++++.++|.++..++++. ++..+.++.+.++++.+.+.|++.|+++.
T Consensus 203 ~~~l~GlRvG~~v~-~~~~~~~l~~~~~~~~~~~~~q~a~~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~g~~~~ 277 (335)
T PRK14808 203 AFSLAAQRIGYVVS-SEKFIDAYNRVRLPFNVSYVSQMFAKVALDHR----EIFEERTKFIVEERERMKSALREMGYRIT 277 (335)
T ss_pred hccCcccceEEEEe-CHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHHHHCCCEEC
Confidence 48999999999999 89999999888877889999999999998864 34566777888889999999999898888
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+|+|+ |+|+.++.. +..++.+.|.+ +||.|++ | .+++||+++ +.++++..++.|.+
T Consensus 278 ~~~g~-f~~~~l~~~-------~~~~~~~~l~~-~Gi~V~~---~----~~~~Risi~--~~~~~~~~~~~l~~ 333 (335)
T PRK14808 278 DSRGN-FVFIFMEKE-------EKERLLEHLRA-KNIAVRS---F----REGVRITIG--KREENDMILKELEV 333 (335)
T ss_pred CCCCe-EEEEeCCCc-------cHHHHHHHHHH-CCeEEEE---C----CCCeEEecC--CHHHHHHHHHHHHh
Confidence 88655 679998842 45778887776 8999985 3 368999999 55787888777764
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=125.27 Aligned_cols=151 Identities=17% Similarity=0.215 Sum_probs=128.4
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL---- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---- 75 (163)
.|+||.|+|-+++ +++++..+.+.... ..++.+.|++++++++.++.++---+-.|-.|+++.+...+.|++.
T Consensus 250 ~GLPG~R~GIiIa-ne~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~ 328 (417)
T COG3977 250 LGLPGSRCGIIIA-NEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEY 328 (417)
T ss_pred cCCCCcceeEEEc-cHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcc
Confidence 5899999999999 99999999998885 5788999999999999998755555678889999999999988876
Q ss_pred CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-------CCceEEEEEecCChhHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-------EPGWFSFSFTLLTEKDIHVV 148 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-------~~~~iRi~~~~~~~~~l~~~ 148 (163)
-+.+.+|+|.+|+|+-+...= .+++++.+.|-+ .||.+.||+.|..+ ...++|+|+.. ++++++++
T Consensus 329 ~~~iHkpEGAIFlWLWf~dLP-----Itt~~LYq~LKa-~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~-~~~~ie~G 401 (417)
T COG3977 329 RCLIHKPEGAIFLWLWFKDLP-----ITTEELYQRLKA-RGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVP-EPEKIEKG 401 (417)
T ss_pred ceeeecCCcceeehhhhccCC-----CCHHHHHHHHHh-CeEEEecccccCCCCCCCCCCccceEEEecCC-CHHHHHHH
Confidence 377889999999998775421 288999998855 89999999988642 25699999998 88999999
Q ss_pred HHHHHHHHHHhh
Q 042816 149 MERIRRISQTCK 160 (163)
Q Consensus 149 ~~~l~~~~~~~~ 160 (163)
+.+|.+.+++.-
T Consensus 402 va~lae~ve~~y 413 (417)
T COG3977 402 VAILAEEVERAY 413 (417)
T ss_pred HHHHHHHHHHHH
Confidence 999999887643
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=132.52 Aligned_cols=133 Identities=20% Similarity=0.310 Sum_probs=113.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECA 80 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 80 (163)
||+||+|+||+++ ++++++.+......++.+.++|.++..++++. .++++.++.++++++.+.+.|+++ |+++.
T Consensus 212 ~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 286 (346)
T TIGR01141 212 FGLAGLRIGYAIA-NAEIIDALNKVRAPFNLSRLAQAAAIAALRDD----DFIEKTVEEINAERERLYDGLKKLPGLEVY 286 (346)
T ss_pred hhchhhhceeeec-CHHHHHHHHhccCCCCCCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEC
Confidence 6899999999999 99999999888777788999999999999886 367889999999999999999998 88865
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
|.+|+|+|++++. ++.++++.|.+ +||.+.||+.|+.. ++++|+|++ ++++++.+++.|
T Consensus 287 -~~~g~~~~~~~~~--------~~~~~~~~L~~-~gI~v~~g~~f~~~-~~~iRls~~--~~~~i~~~~~~l 345 (346)
T TIGR01141 287 -PSDANFVLIRFPR--------DADALFEALLE-KGIIVRDLNSYPGL-PNCLRITVG--TREENDRFLAAL 345 (346)
T ss_pred -CCcCCEEEEecCC--------CHHHHHHHHHH-CCeEEEeCCCcCCC-CCeEEEecC--CHHHHHHHHHHh
Confidence 4567899999874 46788988876 89999999988644 789999988 667888877765
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.4e-19 Score=134.28 Aligned_cols=136 Identities=17% Similarity=0.239 Sum_probs=108.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
.||+||+|+||+++ ++++++.+......++++.+.|.++..+|.+.. .+++++.++.++++++.+.+.|+++ ++++
T Consensus 215 ~~~l~GlRlG~~i~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 291 (354)
T PRK04635 215 AFALAGARCGFTLA-NEELIEILMRVIAPYPVPLPVSEIATQALSEAG--LARMKFQVLDLNAQGARLQAALSMYGGAKV 291 (354)
T ss_pred HhhhhHHHHhhhhC-CHHHHHHHHhhcCCCCCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 37899999999999 999999998877678889999999999987653 2456788889999999999999998 4888
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
.+|+ |.|+|++++ ++.++.+.|.+ +||.|.++..+. .++++|||++ ..++++..++.|++
T Consensus 292 ~~~~-g~f~~~~~~---------~~~~~~~~l~~-~gv~v~~~~~~~--~~~~lRis~~--~~e~~~~l~~al~~ 351 (354)
T PRK04635 292 LEGN-GNYVLAKFD---------DVDAVFKALWD-AGIVARAYKDPR--LANCIRFSFS--NRAETDKLIGLIRN 351 (354)
T ss_pred CCCC-CcEEEEECC---------CHHHHHHHHHH-CCEEEEECCCCC--CCCeEEEEeC--CHHHHHHHHHHHHH
Confidence 7775 568898887 34677776654 899998764432 3679999998 56787777777754
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=132.81 Aligned_cols=136 Identities=21% Similarity=0.328 Sum_probs=112.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||+++ ++++++.+......+++|++.|.++..+|++. +.+ .+.++.+.++++.+.+.|+++|+++.
T Consensus 229 ~~g~~GlRiG~~~~-~~~~~~~l~~~~~~~~~s~~~~~a~~~~l~~~---~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~ 303 (368)
T PRK03317 229 AFAFAGGRLGYLAA-APAVVDALRLVRLPYHLSAVTQAAARAALRHA---DEL-LASVAALRAERDRVVAWLRELGLRVA 303 (368)
T ss_pred hhccchhhhhhhhC-CHHHHHHHHhcCCCCCCCHHHHHHHHHHhhCH---HHH-HHHHHHHHHHHHHHHHHHHHCCCEeC
Confidence 47899999999999 99999999887766789999999999999875 333 34456688899999999999999999
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
+|+++|++|.+++ ++..+++.|++ +||.|.++ +. ++++||+++ +.++++.+++.|.+++..
T Consensus 304 ~~~~~~~~~~~~~---------~~~~~~~~l~~-~Gv~v~~~---~~--~~~iRi~~~--~~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 304 PSDANFVLFGRFA---------DRHAVWQGLLD-RGVLIRDV---GI--PGWLRVTIG--TPEENDAFLAALAEVLAT 364 (368)
T ss_pred CCCCcEEEEeccC---------CHHHHHHHHHH-CCEEEEeC---CC--CCeEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 9999999997764 45788888876 89999874 22 679999998 557888888888887753
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-18 Score=129.13 Aligned_cols=134 Identities=16% Similarity=0.192 Sum_probs=106.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ |+++++.+.+....+++|.+.|.++..+|... +.+.+..++. .++++.+.+.|++.|+.+.
T Consensus 217 ~~g~~GlRiG~~v~-~~~~~~~~~~~~~~~~~s~~~q~~a~~~l~~~---~~~~~~~~~~-~~~r~~~~~~L~~~~~~~~ 291 (352)
T PRK03321 217 AYGLAGLRVGYAVG-HPEVIAALRKVAVPFSVNSLAQAAAIASLAAE---DELLERVDAV-VAERDRVRAALRAAGWTVP 291 (352)
T ss_pred HhhhHHHhhhhhcC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH---HHHHHHHHHH-HHHHHHHHHHHHHCCCccC
Confidence 47899999999999 89999999887666889999999888888764 3444444444 4556778899988887765
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
+ .+|+|+|++++. ++.++++.|.+ +||.|.| |+ ++++||+++ ..++++++++.|.++++
T Consensus 292 ~-~~g~~i~i~l~~--------~~~~~~~~l~~-~gI~v~~---~~---~~~iRi~~~--~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 292 P-SQANFVWLPLGE--------RTADFAAAAAE-AGVVVRP---FA---GEGVRVTIG--APEENDAFLRAARAWRA 350 (352)
T ss_pred C-CCCCEEEEeCCC--------CHHHHHHHHHH-CCEEEEc---cC---CCcEEEeeC--CHHHHHHHHHHHHHHhc
Confidence 4 467899999863 56789998865 9999987 43 356999997 66889999999988764
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=126.44 Aligned_cols=131 Identities=13% Similarity=0.176 Sum_probs=101.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ |+++++.+.+....+++|.+.|.++..++++.+ +..+.++.+.++++.+.+.|.+. .
T Consensus 205 ~~~l~GlRiG~iv~-~~~~i~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~----~ 275 (337)
T PRK03967 205 AFGLAGIRAGYAIA-NEEIIDALYRIKPPFSLNILTMKIVRLALDHYD----LIEERIDYIIKERERVRRELGEY----A 275 (337)
T ss_pred hhcchhhhheeeec-CHHHHHHHHhhcCCCCCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHhccC----c
Confidence 48999999999999 899999999988778899999999999998752 34444555566777888888764 3
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
.|.+++|+|++++ +++.|++ +||.|.++... .++++||+++ ..++.++.++.|.++.+.+
T Consensus 276 ~~~~~~~~~~~~~-------------~~~~l~~-~gi~v~~~~~~---~~~~~Ri~~~--~~~~~~~l~~~l~~~~~~~ 335 (337)
T PRK03967 276 YPSDANFLLLKLD-------------AYDYLLE-NGIVVRKLSGR---LEGHIRVTVG--KREENDEFIKALKEIKEGY 335 (337)
T ss_pred CCCCCcEEEEhHH-------------HHHHHHH-CCEEEEeCCCC---CCCeEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence 4688999998653 4567776 89999986532 2679999998 4466677777777776654
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-17 Score=123.79 Aligned_cols=135 Identities=11% Similarity=0.151 Sum_probs=106.3
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
++||+|+||+++ ++++++.+.+...+ ++++++.|.++..+|+.. . .+..++.++++.+++.+.++. +.+.
T Consensus 205 alaG~r~G~v~~-~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~---~--~~~~~~~l~~r~~~~~~~l~~--~~~~ 276 (346)
T TIGR03576 205 LMDGPRGGLLAG-RKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEF---E--LSRIRDAFKRKEEVYLRLFDK--LNVE 276 (346)
T ss_pred hccccceEEEEe-CHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhc---c--HHHHHHHHHHHHHHHHHHHHh--CCCC
Confidence 589999999999 99999999998874 357888999999988753 2 256688999999999888884 4555
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChh---HHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEK---DIHVVMERIRRI 155 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~---~l~~~~~~l~~~ 155 (163)
++.++ |+|++++.. ++.+++..+++++||.|+||+.|. ..++|+||+++. +++ +++..++.|++.
T Consensus 277 ~~~~~-f~~~~~~~~-------~~~~~~~~ll~~~gV~v~~~~~f~-~~~~~vRis~~~-~~~~~~~~~~~~~al~~~ 344 (346)
T TIGR03576 277 RTPTG-FVIKGVEEE-------KLIEIGLDLLRNYGIITITAVGMP-GASKTLRFDLAA-KDAERIGDDYLVEAVKDS 344 (346)
T ss_pred cCCCe-EEEEeCCCC-------CHHHHHHHHHHhCCEEEeCCcccC-CCCCeEEEEEec-ChHHhcCHHHHHHHHHhc
Confidence 55555 799999742 356777788888999999999884 237899999997 554 678888777654
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-16 Score=117.52 Aligned_cols=126 Identities=18% Similarity=0.280 Sum_probs=91.4
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+||+||+|+||+++ +++.+.....++..+.+.|.++..++++. .+++.+.++.+.++++.+.+.+ ..
T Consensus 183 ~~~l~GlRiG~~v~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~l------~~ 249 (311)
T PRK08354 183 SYGLPGIRVGYVKG----FEEAFRSVRMPWSIGSTGYAFLEFLIEDD---FEHLRKTMPLIWREKERFEKAL------YV 249 (311)
T ss_pred hcCCccceeeeeee----hHHHHHHcCCCccCCHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHhc------CC
Confidence 48999999999999 45666666667778888888888887743 2556666777777776665544 23
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+|+++|++ ++++ ++.++++.|.+ +||.|.||+.|+. ++++||+++. .++.+..++.|++
T Consensus 250 ~~~~~~~~-~~~~---------~~~~~~~~l~~-~gv~v~~g~~f~~--~~~iRi~~~~--~~~~~~l~~al~~ 308 (311)
T PRK08354 250 KSDANFFI-KDVG---------DAEKFVEFLKR-NGILVRDCTSFGL--PGYIRFSVRD--REENEKLIRALRE 308 (311)
T ss_pred CCCCcEEE-EECC---------CHHHHHHHHHH-CCeEEEecccCCC--CCeEEEEeCC--HHHHHHHHHHHHH
Confidence 57777766 5664 45788888865 8999999999964 6899999995 3444444444443
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-15 Score=111.21 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=109.2
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChH-HHHHHHHHHHHHHHHHHHHHHHHhhhc-C---
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTK-FVQKFININRERLRRLYVKFVAGLRQL-G--- 76 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~-g--- 76 (163)
.||-+|+|+.+ +++-++.+.+.... ++++.++|.....+|.+.+ -+++||++.++.++-+.+.+.+.|.+. |
T Consensus 257 f~GaGva~~aa-S~~Nl~~~~~~~~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~ 335 (425)
T PF12897_consen 257 FPGAGVAFFAA-SEANLAWIKKHLSVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGL 335 (425)
T ss_dssp -TTSS-EEEEE--HHHHHHHHHHHHHH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGG
T ss_pred cCCcceeeeec-CHHHHHHHHHHhcCceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCC
Confidence 58999999999 89888988888773 7899999999999999976 679999999999999999999998775 4
Q ss_pred --CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC-CCCCCCC---CCceEEEEEecCChhHHHHHHH
Q 042816 77 --IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP-GSSCHCI---EPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 77 --~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p-g~~f~~~---~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
.+|..|+||||+++++.++ .+.+.++ |.++.||.++| |..|... .+..|||+.+.++.++++.+++
T Consensus 336 ~ia~Wt~P~GGYFIsld~~~G-------~AkrvV~-lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~ 407 (425)
T PF12897_consen 336 GIASWTKPKGGYFISLDVLDG-------TAKRVVE-LAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMD 407 (425)
T ss_dssp TSEEE---SBSS-EEEEESTT--------HHHHHH-HHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHH
T ss_pred CeeEecCCCCceEEEEecCCC-------hHHHHHH-HHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHH
Confidence 6999999999999999874 5677777 45669999999 8888532 3679999999989999999999
Q ss_pred HHHHHHH
Q 042816 151 RIRRISQ 157 (163)
Q Consensus 151 ~l~~~~~ 157 (163)
.+.-++.
T Consensus 408 ~~~~cv~ 414 (425)
T PF12897_consen 408 VFATCVK 414 (425)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9986553
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-15 Score=116.48 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=78.1
Q ss_pred CC-CCCceeEEEEEe--cCHHHHHHHHHhhc-ccCCChHHHHHHHHhcCChH-----H--HHHHHHHHHHHHHHHHHHHH
Q 042816 1 DL-SLPGFRISVIYS--YNNSVLAAAKKLAR-FSSVSAPSQNLLVSMLSDTK-----F--VQKFININRERLRRLYVKFV 69 (163)
Q Consensus 1 ~~-~~~G~RiG~~i~--~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~-----~--~~~~~~~~~~~~~~~~~~l~ 69 (163)
+| |+||||+||+++ .|+++++.+.+... .+++|.++|.++..+|++++ + ..++++++++.|++|++++.
T Consensus 292 ~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~ 371 (407)
T PLN02368 292 GYWGECGQRGGYFEMTNIPPKTVEEIYKVASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMT 371 (407)
T ss_pred ccccCCccceEEEEEeCCCHHHHHHHHHHhcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36 899999999994 28899999988754 47899999999999998541 1 13445678999999999999
Q ss_pred HHhhhc-CCccccCCceeEEEeecCC
Q 042816 70 AGLRQL-GIECAKSNGGFYCWADMSG 94 (163)
Q Consensus 70 ~~l~~~-g~~~~~~~~g~~~~~~~~~ 94 (163)
+.|+++ |+.+.+|+||||+|++++-
T Consensus 372 ~~L~~~~g~~~~~P~Gafy~~~~i~l 397 (407)
T PLN02368 372 DGFNSCKNVVCNFTEGAMYSFPQIKL 397 (407)
T ss_pred HHHhCCCCeEeCCCCeeeEeccCCCC
Confidence 999998 9999999999999987653
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-14 Score=106.85 Aligned_cols=140 Identities=31% Similarity=0.491 Sum_probs=114.6
Q ss_pred CCCCceeEEEEEecCH-HHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 2 LSLPGFRISVIYSYNN-SVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~-~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
++.+|+|+||+++ ++ ++.+.+...... ++++...|.++..+++.. .+++++.++.+.++++++.+.|++++..
T Consensus 206 ~~~~g~~~G~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 281 (350)
T cd00609 206 FGLPGLRIGYLIA-PPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDG---EEHLEELRERYRRRRDALLEALKELGPL 281 (350)
T ss_pred cCCcccceEEEec-CHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 5679999999999 67 899998887775 678899999999999886 3678899999999999999999998543
Q ss_pred c-ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHH
Q 042816 79 C-AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153 (163)
Q Consensus 79 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~ 153 (163)
. ..+.+|+++|+.++.. ...+++.++++++||.+.++..|....+.++||+++.. .++++.+++.|+
T Consensus 282 ~~~~~~~g~~~~~~~~~~-------~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~-~~~i~~~~~al~ 349 (350)
T cd00609 282 VVVKPSGGFFLWLDLPEG-------DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP-EEELEEALERLA 349 (350)
T ss_pred cccCCCccEEEEEecCCC-------ChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC-HHHHHHHHHHhh
Confidence 3 6778999999999863 23444455556689999999888754578999999984 889999888875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=105.69 Aligned_cols=139 Identities=11% Similarity=0.101 Sum_probs=97.9
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG-IE 78 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~ 78 (163)
++ +|+|+||+++ ++++++.+..... .++.+++.|.++...++..+. +++.++.++.....++.+.+.+..++ +.
T Consensus 253 ~~-~G~rig~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 329 (396)
T PRK02627 253 LG-GGVPIGAVLA-KEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEE-EGLLENAAEVGEYLRAKLRELLEKYPGIK 329 (396)
T ss_pred hh-CCcccEEEEE-cHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 56 8999999999 8899888865333 367899999998888874322 23344444444444444444444332 22
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~~ 157 (163)
.. +..|.++|++++. ++.++++.|++ +||.+.|+. .+++|++++ .++++++++++++|.++++
T Consensus 330 ~~-~~~g~~~~i~~~~--------~~~~~~~~l~~-~Gv~v~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~l~ 393 (396)
T PRK02627 330 EV-RGLGLMIGIELDR--------PAAEIVKKALE-KGLLINVTG------DNVLRLLPPLIISKEEIDEAVDRLEEVLK 393 (396)
T ss_pred ee-ccCcEEEEEEecC--------cHHHHHHHHHH-CCeEEeecC------CCEEEEECCcccCHHHHHHHHHHHHHHHH
Confidence 22 2357889999843 57889999987 699999863 478999875 3588999999999999886
Q ss_pred Hh
Q 042816 158 TC 159 (163)
Q Consensus 158 ~~ 159 (163)
++
T Consensus 394 ~~ 395 (396)
T PRK02627 394 EL 395 (396)
T ss_pred hh
Confidence 53
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-13 Score=107.01 Aligned_cols=147 Identities=8% Similarity=-0.025 Sum_probs=108.4
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-cccc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI-ECAK 81 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~~~~ 81 (163)
+|+|+||+++ ++++++.+...... ++.+++.|.++..+|+.... ++++++.++..++.++.+.+.+...+. ....
T Consensus 272 ~G~rig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~ 349 (425)
T PRK08088 272 GGFPLAGVTG-RAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQ-ENLLQKANALGEKLKDGLLAIAEKHPEIGDVR 349 (425)
T ss_pred CCCcceeeEe-cHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 8999999999 99999988665442 56899999999999987654 677778887777777766666555532 2222
Q ss_pred CCceeEEEeecCCccc--CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHHHHH
Q 042816 82 SNGGFYCWADMSGLIS--SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~~~ 158 (163)
+. |+++|+.+.+... .++......+.+.+.+ +||.+.|+..| ++.+|++++ .++++++++++++|.+++.+
T Consensus 350 g~-G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~-~Gv~~~~~~~~----~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 350 GL-GAMIAIELFEDGDHSKPNAKLTAQIVARARD-KGLILLSCGPY----YNVLRILVPLTIEDAQIRQGLEIIAQCFDE 423 (425)
T ss_pred cc-ceEEEEEEecCCCCCCCCHHHHHHHHHHHHh-CCCEEecCCCC----CCEEEEECCCCcCHHHHHHHHHHHHHHHHh
Confidence 22 8889999843210 0111246788888876 89999886444 378999998 45789999999999999876
Q ss_pred h
Q 042816 159 C 159 (163)
Q Consensus 159 ~ 159 (163)
.
T Consensus 424 ~ 424 (425)
T PRK08088 424 A 424 (425)
T ss_pred h
Confidence 4
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.7e-13 Score=101.29 Aligned_cols=132 Identities=15% Similarity=0.118 Sum_probs=95.4
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL---- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---- 75 (163)
|+ +|+|+||+++ ++++++.+..... .++.+++.|.++..+|+.- .. ...++.++++++.+.+.|++.
T Consensus 241 ~~-~G~riG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~---~~--~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (379)
T TIGR00707 241 LG-GGVPIGATLA-KEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVI---EK--ERLLENVKEKGDYFKERLEELGKNY 313 (379)
T ss_pred cc-CCcccEEEEE-cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH---Hh--hhHHHHHHHHHHHHHHHHHHHHhhC
Confidence 67 9999999999 8999999876433 3578899999888777532 11 234455666666666666554
Q ss_pred CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
++... +..|.++|++++. +..++.+.|.+ +||.+.|+. ++++||+++. .+++++++++++|.+
T Consensus 314 ~~~~~-~~~g~~~~~~~~~--------~~~~~~~~l~~-~Gv~v~~~~------~~~lRi~~~~~~t~~~i~~~~~~l~~ 377 (379)
T TIGR00707 314 PNKEV-RGKGLMLGIELEA--------PCKDIVKKALE-KGLLVNCAG------PKVLRFLPPLIITKEEIDEAVSALEE 377 (379)
T ss_pred CCCcc-ccCceEEEEEecC--------cHHHHHHHHHH-CCcEEeeCC------CCEEEEECCCcCCHHHHHHHHHHHHH
Confidence 22212 2467788888874 45788888776 899999852 4789999753 588999999999987
Q ss_pred HH
Q 042816 155 IS 156 (163)
Q Consensus 155 ~~ 156 (163)
++
T Consensus 378 ~~ 379 (379)
T TIGR00707 378 AI 379 (379)
T ss_pred hC
Confidence 53
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=9e-13 Score=102.23 Aligned_cols=140 Identities=15% Similarity=0.176 Sum_probs=104.4
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG--- 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g--- 76 (163)
++ +|+|+||+++ ++++++.+..... .++.+++.|.++...|+.- . ....++.++++.+++.+.|++++
T Consensus 255 l~-~G~rig~vv~-~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~---~--~~~~~~~~~~~~~~l~~~L~~~~~~~ 327 (403)
T PRK05093 255 LG-GGFPIGAMLT-TAEIASHFKVGTHGSTYGGNPLACAVAEAVFDII---N--TPEVLEGVKARRQRFVDGLQKINQKY 327 (403)
T ss_pred cc-CCcceEEEEE-cHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH---h--hccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 56 8999999999 8999888875433 2567899998888866421 1 12445788888999999888763
Q ss_pred -CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecC-ChhHHHHHHHHHHH
Q 042816 77 -IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLL-TEKDIHVVMERIRR 154 (163)
Q Consensus 77 -~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~-~~~~l~~~~~~l~~ 154 (163)
+....+.+|+++|+.++... ..++.++++.|++ +||.+.|+ +++++|++++.. +++++++++++|.+
T Consensus 328 ~~~~~~~~~G~~~~~~l~~~~----~~~~~~~~~~l~~-~Gv~v~~~------g~~~lRl~~~~~~~~~~i~~~~~~l~~ 396 (403)
T PRK05093 328 GVFSEIRGMGLLIGAELKPQY----KGRARDFLNAAAE-EGVMVLVA------GPDVLRFAPSLVIEEADIDEGLARFEK 396 (403)
T ss_pred CCeEeEeeCceEEEEEecCcc----hhHHHHHHHHHHH-CCeEEecC------CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22344567999999986421 0146789998887 89999874 257999976553 88999999999999
Q ss_pred HHHHh
Q 042816 155 ISQTC 159 (163)
Q Consensus 155 ~~~~~ 159 (163)
++.++
T Consensus 397 ~l~~~ 401 (403)
T PRK05093 397 AVAKV 401 (403)
T ss_pred HHHHh
Confidence 88754
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-12 Score=101.60 Aligned_cols=142 Identities=14% Similarity=0.125 Sum_probs=102.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc---cc-CCC-hHHHHHHHHhc---C--ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR---FS-SVS-APSQNLLVSML---S--DTKFVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~---~~-~~s-~~~q~~~~~~l---~--~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
||++| ||+++ ++++++.+..... +. +++ ...|.+ ...| . ++ .++..+.++.++++++++.+.
T Consensus 313 ~g~~G---G~i~~-~~~li~~l~~~~~~~~~~~~~~p~~~~~~-~aaL~~l~~~~g---~~~~~~~~~~l~~~~~~l~~~ 384 (489)
T PLN02483 313 FGSCG---GYIAG-SKELIQYLKRTCPAHLYATSMSPPAVQQV-ISAIKVILGEDG---TNRGAQKLAQIRENSNFFRSE 384 (489)
T ss_pred cccCc---eEEEc-CHHHHHHHHHhCccccccCCcCHHHHHHH-HHHHHHHHhCcc---ccchHHHHHHHHHHHHHHHHH
Confidence 56666 99999 9999999987643 22 223 334433 2323 2 22 133455678899999999999
Q ss_pred hhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--CCCceEEEEEec-CChhHHHHH
Q 042816 72 LRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC--IEPGWFSFSFTL-LTEKDIHVV 148 (163)
Q Consensus 72 l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~--~~~~~iRi~~~~-~~~~~l~~~ 148 (163)
|+++|+.+..+.+++.+|+-+.... +..++++.|++ +||.|.| ..|.. ...+++||+++. +++|+++++
T Consensus 385 L~~~G~~v~~~~~sp~~~l~l~~~~------~~~~~~~~Ll~-~GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~ 456 (489)
T PLN02483 385 LQKMGFEVLGDNDSPVMPIMLYNPA------KIPAFSRECLK-QNVAVVV-VGFPATPLLLARARICISASHSREDLIKA 456 (489)
T ss_pred HHHCCCcccCCCCCCEEEEEECCHH------HHHHHHHHHHH-CCcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHH
Confidence 9999988887777777777655321 55689999987 7999997 55532 235799999975 588999999
Q ss_pred HHHHHHHHHHh
Q 042816 149 MERIRRISQTC 159 (163)
Q Consensus 149 ~~~l~~~~~~~ 159 (163)
+++|.++.+.+
T Consensus 457 l~~L~~~~~~~ 467 (489)
T PLN02483 457 LEVISEVGDLV 467 (489)
T ss_pred HHHHHHHHHHh
Confidence 99999987654
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-12 Score=99.18 Aligned_cols=142 Identities=14% Similarity=0.087 Sum_probs=101.3
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc---cCC-ChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF---SSV-SAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~---~~~-s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+|+|+||+++ ++++++.+...... .++ ++..+.++...++.- . ..++.++.++++++++.+.|++.|++..
T Consensus 247 ~g~r~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~---~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 321 (397)
T PRK06939 247 GGASGGYTAG-RKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELL---E-ESDELRDRLWENARYFREGMTAAGFTLG 321 (397)
T ss_pred CccCceEEEe-CHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHH---h-cCHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 4679999999 89999998875442 222 233344444444321 1 1256788899999999999998888877
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--CCCceEEEEEec-CChhHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC--IEPGWFSFSFTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~--~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
++.++++.+ .++.. .++.++++.|++ +||.+.++. |.. .+.+++|++++. ++++++++++++|.++++
T Consensus 322 ~~~~~~~~~-~~~~~------~~~~~~~~~L~~-~gI~v~~~~-~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~ 392 (397)
T PRK06939 322 PGEHPIIPV-MLGDA------KLAQEFADRLLE-EGVYVIGFS-FPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGK 392 (397)
T ss_pred CCCCCEEEE-EECCH------HHHHHHHHHHHH-CCceEeeeC-CCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 777776544 34432 257889999987 699999754 432 235799999864 588999999999999987
Q ss_pred Hhh
Q 042816 158 TCK 160 (163)
Q Consensus 158 ~~~ 160 (163)
+..
T Consensus 393 ~~~ 395 (397)
T PRK06939 393 ELG 395 (397)
T ss_pred HhC
Confidence 653
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-12 Score=102.42 Aligned_cols=150 Identities=14% Similarity=0.110 Sum_probs=110.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCC--ChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSV--SAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~--s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
||++| ||+++ ++++++.+..... .++. +++.|.++..+|+.. +. ....++.++++.+++.+.|++. |
T Consensus 318 lg~~G---G~i~g-~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l---~~-~~~~~~~l~~~~~~l~~~L~~~~g 389 (481)
T PLN02822 318 LATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL---ED-NPSVLAKLKENIALLHKGLSDIPG 389 (481)
T ss_pred hhhCC---eEEEc-CHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHH---Hh-CHHHHHHHHHHHHHHHHHHHhcCC
Confidence 56778 99999 9999998876544 2343 355677777777432 22 2578889999999999999997 8
Q ss_pred CccccCCceeEEEeecCCcccC--CChhhHHHHHHHHHHhcCeEEcCC--CCCCCC-CCceEEEEEec-CChhHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISS--YSEKGELELWDKLLNVAKVNVTPG--SSCHCI-EPGWFSFSFTL-LTEKDIHVVME 150 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~gi~v~pg--~~f~~~-~~~~iRi~~~~-~~~~~l~~~~~ 150 (163)
+.+..+.+++++++.+++.... .+.....+++++|++++||.+.|+ ..|... .+.++|++++. +++++++++++
T Consensus 390 ~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~ 469 (481)
T PLN02822 390 LSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASE 469 (481)
T ss_pred cccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHH
Confidence 9888888999999999642100 011124689999986689999976 445422 25689999864 48899999999
Q ss_pred HHHHHHHHh
Q 042816 151 RIRRISQTC 159 (163)
Q Consensus 151 ~l~~~~~~~ 159 (163)
+|++++.+.
T Consensus 470 ~l~~~~~~~ 478 (481)
T PLN02822 470 SLKRVAASV 478 (481)
T ss_pred HHHHHHHHH
Confidence 999988764
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-12 Score=99.30 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=98.2
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
+|+|+||+++ ++++++.+...... ++.+++.|.++...|+ ++++ .++.+++.+.++++.+.+.+.+... +..
T Consensus 248 ~G~~ig~~~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~-~~~~~~~~~~l~~~l~~l~~~~~~~-~~~ 324 (389)
T PRK01278 248 GGFPLGACLA-TEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGF-LDNVQRMGLYLKQKLEGLVDRFPDV-IEE 324 (389)
T ss_pred CCcceEEEEE-cHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHhhCCCc-eee
Confidence 7999999999 88888887655442 4688899988865554 3333 4666777777777776654332211 222
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
..+ .|+++|++++. ++.++++.|++ +||.+.|+. ++++||+++. ++++++++++++|.+++.+
T Consensus 325 v~g-~G~~~~i~~~~--------~~~~~~~~l~~-~GV~~~p~~------~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 325 VRG-KGLLLGLKCVV--------PNRDLVQALRD-EGLLTVGAG------DNVVRLLPPLIITEEEIDEALERLERAAES 388 (389)
T ss_pred Eec-ccEEEEEEEec--------CHHHHHHHHHH-CCeEEeecC------CCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 333 67788888753 56889999987 699999872 5799999753 5889999999999998865
Q ss_pred h
Q 042816 159 C 159 (163)
Q Consensus 159 ~ 159 (163)
+
T Consensus 389 ~ 389 (389)
T PRK01278 389 L 389 (389)
T ss_pred C
Confidence 3
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-12 Score=91.55 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=108.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc-
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE- 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~- 78 (163)
+||++|+|+||..+ +.++++.+.+.+.+++.|.+...++..++++.. -+.++..++.+-+.+..+.+.|... ++.
T Consensus 228 sfGLAGiRvG~~~~-~~~ia~iln~~KaPYNiS~~~s~~AL~Als~~n--~kkme~~rdaiv~er~RL~keLt~v~~~~~ 304 (375)
T KOG0633|consen 228 SFGLAGIRVGYGAF-PLSIAEILNRAKAPYNISVAGSVAALAALSDSN--GKKMEDVRDAIVRERERLFKELTEVPFLND 304 (375)
T ss_pred hcCcceeEeecccc-cHHHHHHHHhccCCccccchhHHHHHHhcCccc--chHHHHHHHHHHHHHHHHHHHhhcCccccC
Confidence 48999999999999 999999999999999999999999999998643 3678899999999999999999998 544
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC-CCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP-GSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p-g~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
+..+.-+-|+.+++... .+. -+..+..+++.+.||.|+- |+.-+ .++++||++++ +|+....++-|+++
T Consensus 305 ~~gg~daNFiLi~v~~~---~n~-~akkly~q~at~~gVvVRfrgse~~--c~G~lRitvGt--~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 305 YPGGSDANFILIEVTGG---DNG-MAKKLYKQDATKMGVVVRFRGSEEG--CKGYLRITVGT--PEENTVLMKCLKQF 374 (375)
T ss_pred CCCcccccEEEEEEcCC---CcH-HHHHHHHHHHHhcceEEEEcCCccc--cceeEEEEcCC--cccchHHHHHHHhh
Confidence 33344445677777642 121 2345555566668999973 33222 38999999995 35556666666654
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-12 Score=98.13 Aligned_cols=133 Identities=11% Similarity=0.113 Sum_probs=93.9
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL--GI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~ 77 (163)
++ +|+|+||+++ ++++++.+..... .++.+++.|.++..+|+.... + ...+.+.++.+++.+.|++. ++
T Consensus 238 l~-~G~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~-~----~~~~~~~~~~~~l~~~L~~~~~~~ 310 (377)
T PRK02936 238 LG-NGIPVGAMIG-KKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQ-P----SFLEEVQEKGEYFLQKLQEELEHL 310 (377)
T ss_pred cc-CCCccEEEEE-cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh-c----cHHHHHHHHHHHHHHHHHHHHhhC
Confidence 56 8999999999 8999888865433 246899999999888865321 2 33345556666666666553 22
Q ss_pred ccc--cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE-ecCChhHHHHHHHHHHH
Q 042816 78 ECA--KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF-TLLTEKDIHVVMERIRR 154 (163)
Q Consensus 78 ~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~-~~~~~~~l~~~~~~l~~ 154 (163)
... ....|+++|++++. +...+.+.|.+ +||.+.|+ +.+++||++ ..++++++++++++|.+
T Consensus 311 ~~~~~v~~~g~~~~i~~~~--------~~~~~~~~l~~-~gv~v~~~------g~~~lRi~p~~~~~~~~i~~~i~~l~~ 375 (377)
T PRK02936 311 ECVKNIRGKGLMIGIECTE--------EVAPVIEQLRE-EGLLVLSA------GPNVIRLLPPLVVTKEELDQAVYLLKK 375 (377)
T ss_pred CcEEeEeecceEEEEEecc--------hHHHHHHHHHH-CCeEEecC------CCCEEEEECCcccCHHHHHHHHHHHHH
Confidence 221 12356899999975 35677777765 89999884 257999996 33589999999999987
Q ss_pred HH
Q 042816 155 IS 156 (163)
Q Consensus 155 ~~ 156 (163)
++
T Consensus 376 ~~ 377 (377)
T PRK02936 376 VL 377 (377)
T ss_pred hC
Confidence 53
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-12 Score=97.86 Aligned_cols=133 Identities=11% Similarity=0.047 Sum_probs=104.5
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-Ccccc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG-IECAK 81 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~ 81 (163)
+|+|+||+++ ++++.+.+..... .++.+++.|.++..+|+.... +++.++.++..+..++.+.+.+.+++ +...
T Consensus 238 ~G~~ig~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 314 (375)
T PRK04260 238 NGVPVGAMLA-KSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLT-AGFLEQALENGNYLQEQLQKALQDKETVTTV- 314 (375)
T ss_pred CCcceEEEEE-cHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhhCCCeeEE-
Confidence 6899999999 8999888865333 356789999999999876543 56778888888888888888887764 3333
Q ss_pred CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE-ecCChhHHHHHHHHHHHH
Q 042816 82 SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF-TLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~-~~~~~~~l~~~~~~l~~~ 155 (163)
+..|+++|++++. +...+.+.+.+ +||.+.|+ +.+.+|++. ..++++++++++++|.++
T Consensus 315 ~~~g~~~~~~~~~--------~~~~~~~~l~~-~Gi~v~~~------~~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 315 RGLGYMIGIETTA--------DLSQLVEAARD-KGLIVLTA------GTNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred eccceEEEEEecC--------cHHHHHHHHHh-CCCEEecC------CCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 3489999999853 56788888876 89999874 247899999 557889999999999765
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.7e-12 Score=98.43 Aligned_cols=143 Identities=12% Similarity=0.078 Sum_probs=105.4
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
||++| ||+++ ++++++.+++.... .+.+++.|.++..+|+.. +.....++.+.++++++.+.|++.|+
T Consensus 250 ~g~~G---G~~~~-~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~ 321 (410)
T PRK13392 250 FGCLG---GYIAA-SADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHL----KTSQTERDAHQDRVAALKAKLNANGI 321 (410)
T ss_pred hhccc---chhhc-CHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 67777 99999 89999988877653 234556788787887653 22345668889999999999999899
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-CCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-IEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
++.+++++++ .+.++.. .+..++++.|++++||.+.|+..... .+..++||++.. +++++++.+++.|.++
T Consensus 322 ~~~~~~~~~~-~i~~~~~------~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~ 394 (410)
T PRK13392 322 PVMPSPSHIV-PVMVGDP------TLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAI 394 (410)
T ss_pred CCCCCCCCEE-EEEeCCH------HHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 8888888765 2233321 14678999887668999998754332 235799999852 4889999999999988
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
++++
T Consensus 395 ~~~~ 398 (410)
T PRK13392 395 WDRL 398 (410)
T ss_pred HHHc
Confidence 7654
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.8e-12 Score=95.81 Aligned_cols=135 Identities=16% Similarity=0.129 Sum_probs=97.9
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--c--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--S--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
||++| ||+++ ++++++.+...... . ++++..+.++..+++.. ...+..++.++++++++.+.|+++++
T Consensus 219 ~~~~g---G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~ 290 (360)
T TIGR00858 219 LGSYG---AYVAG-SQALIDYLINRARTLIFSTALPPAVAAAALAALELI----QEEPWRREKLLALIARLRAGLEALGF 290 (360)
T ss_pred hhccC---cEEEc-CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45555 99999 89999888655432 1 23444444555666432 22356789999999999999998887
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-CCCceEEEEEec-CChhHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-IEPGWFSFSFTL-LTEKDIHVVMERI 152 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~iRi~~~~-~~~~~l~~~~~~l 152 (163)
++.+ .++.++|+.++.. .++.++++.|++ +||.+.|+..+.. .+++++||++.. .+.++++.++++|
T Consensus 291 ~~~~-~~~~~~~~~~~~~------~~~~~~~~~l~~-~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l 359 (360)
T TIGR00858 291 TLMP-SCTPIVPVIIGDN------ASALALAEELQQ-QGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEAL 359 (360)
T ss_pred ccCC-CCCCEEEEEeCCH------HHHHHHHHHHHH-CCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhh
Confidence 7764 4667889888753 267889999876 8999998766643 235799999984 4788999888876
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=95.79 Aligned_cols=147 Identities=11% Similarity=0.056 Sum_probs=99.9
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc--cCCChHH-HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPS-QNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
++|.|.||++++++++++.+.+.... .+.+.+. +.++..++.... ..+.++.++.+.++++++.+.|++.|+++.
T Consensus 226 l~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 303 (402)
T cd00378 226 LRGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEAL--EPEFKAYAKQVVENAKALAEALKERGFKVV 303 (402)
T ss_pred CCCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHhCCCeEe
Confidence 58999999999444899998776653 2322222 333333333221 224567778899999999999999888775
Q ss_pred -cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC----CCCCceEEEEEecC-----ChhHHHHHHH
Q 042816 81 -KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH----CIEPGWFSFSFTLL-----TEKDIHVVME 150 (163)
Q Consensus 81 -~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~----~~~~~~iRi~~~~~-----~~~~l~~~~~ 150 (163)
.|.+++++|++++... .+...+.+. ++++||.+.++.... ...++++|+++... +.++++.+++
T Consensus 304 ~~~~~~~~v~v~~~~~~-----~~~~~~~~~-l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~ 377 (402)
T cd00378 304 SGGTDNHLVLVDLRPKG-----ITGKAAEDA-LEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIAD 377 (402)
T ss_pred ecCCCCeEEEEeCCccC-----CCHHHHHHH-HHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHH
Confidence 4678999999997421 134555654 456899998643212 11357899998653 4788999999
Q ss_pred HHHHHHHH
Q 042816 151 RIRRISQT 158 (163)
Q Consensus 151 ~l~~~~~~ 158 (163)
.|.+++.+
T Consensus 378 ~l~~~~~~ 385 (402)
T cd00378 378 FIARALKD 385 (402)
T ss_pred HHHHHHhc
Confidence 99987653
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-11 Score=93.29 Aligned_cols=138 Identities=20% Similarity=0.218 Sum_probs=98.3
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc-c--cC-CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR-F--SS-VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~-~--~~-~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
||++| ||+++ ++++.+.+.+... + .+ .+++.+.++..+++.. +.. +..++.+.++++++.+.|++.|+
T Consensus 241 ~~~~G---g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~---~~~-~~~~~~~~~~~~~l~~~L~~~~~ 312 (385)
T PRK05958 241 LGSSG---AAVLG-SETLIDYLINRARPFIFTTALPPAQAAAARAALRIL---RRE-PERRERLAALIARLRAGLRALGF 312 (385)
T ss_pred cccCC---cEEEc-CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH---hcC-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 45556 99999 8899888765543 2 22 3444444555666543 222 46678899999999999998888
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-CCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-IEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
++.+|.++ ++|+.++.. .++.++++.|.+ +||.|.++..+.. .+++++||+++. .+++++++++++|.++
T Consensus 313 ~~~~~~~~-~~~~~~~~~------~~~~~~~~~l~~-~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 313 QLMDSQSA-IQPLIVGDN------ERALALAAALQE-QGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred CcCCCCCC-EEEEEeCCH------HHHHHHHHHHHH-CCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 88777665 567777642 267789999876 8999998654432 235799999973 4889999999999765
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-11 Score=93.91 Aligned_cols=135 Identities=14% Similarity=0.083 Sum_probs=101.3
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-C
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLV---SMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG-I 77 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~ 77 (163)
.+|+|+||+++ ++++.+.+..... .++.+++.+.++. .+++++++ .++++++.+.+++ .+.+.+.++. +
T Consensus 239 ~~G~pig~v~~-~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~-~~~~~~~g~~l~~---~l~~~~~~~~~~ 313 (382)
T PLN00144 239 AGGLPIGAVLV-TEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGF-LASVAKKGEYLRE---LLRRKLGGNPHV 313 (382)
T ss_pred cCCcceEEEEE-cHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHH---HHHHHHhhCCCc
Confidence 36899999999 8999888764333 3578888898888 66676655 6777777777743 4445555552 2
Q ss_pred -ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 78 -ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 -~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
++. ..|+++|+++.. +...+++.+.+ +||.+.|+.. .+.+|++++. ++++++++++++|.++
T Consensus 314 ~~vr--g~G~~~~l~l~~--------~~~~~~~~~~~-~Gv~i~~~~~-----~~~lrl~p~~~~~~~~i~~~~~~l~~~ 377 (382)
T PLN00144 314 KEVR--GVGLLVGIQLDV--------PAGPLVDACRD-SGLLVLTAGK-----GDVVRLVPPLVISEAELEQAVEILADC 377 (382)
T ss_pred eeee--cCceEEEEEecC--------ccHHHHHHHHH-CCeEEeecCC-----CCEEEEeCCCccCHHHHHHHHHHHHHH
Confidence 333 389999999942 45678888876 9999998721 4789999987 7899999999999999
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+.++
T Consensus 378 l~~~ 381 (382)
T PLN00144 378 LPAL 381 (382)
T ss_pred HHhc
Confidence 8764
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-11 Score=91.45 Aligned_cols=125 Identities=9% Similarity=0.088 Sum_probs=89.5
Q ss_pred eEE-EEEecCHHHHHHHHHhhcccC----CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Q 042816 8 RIS-VIYSYNNSVLAAAKKLARFSS----VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKS 82 (163)
Q Consensus 8 RiG-~~i~~~~~~~~~~~~~~~~~~----~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 82 (163)
++| |+++ ++++++.+.+....++ .+.+.|.++...|++. .++++ + ..++++++.+.|+++|+++.+|
T Consensus 202 ~~G~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~---~~~~~---~-~~~~r~~l~~~L~~~g~~~~~~ 273 (333)
T PRK10534 202 PVGSLLVG-NRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHN---VARLQ---E-DHDNAAWLAEQLREAGADVMRQ 273 (333)
T ss_pred cccceEEc-CHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh---HHHHH---H-HHHHHHHHHHHHHhCCCccCCC
Confidence 478 6888 9999999988876432 3345676666666431 22222 2 3345788999999999998877
Q ss_pred CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHHHH
Q 042816 83 NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~~ 157 (163)
+++|+|++++.. +..++.+.|. ++||.|.||. ++|++.. .++++++++++++|++++.
T Consensus 274 -~~nfv~~~~~~~-------~~~~~~~~l~-~~gi~v~~~~--------~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 274 -DTNMLFVRVGEE-------QAAALGEYMR-ERNVLINASP--------IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred -CceEEEEECCch-------hHHHHHHHHH-HcCeeecCCc--------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 577999998741 4567776555 5899999873 4788764 2488999999999987764
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.5e-11 Score=92.27 Aligned_cols=143 Identities=15% Similarity=0.135 Sum_probs=100.2
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhc-c--cC-CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLAR-F--SS-VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~-~--~~-~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
++|+|+||+++ ++++++.+..... + .+ .++..+.++...++.. +..++.++.++++++++.+.|++.|+++
T Consensus 242 l~g~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 316 (393)
T TIGR01822 242 LGGASGGFTTA-RKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEML----EASNELRDRLWANTRYFRERMEAAGFDI 316 (393)
T ss_pred hhCCCcEEEEe-CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 56889999999 8999998877543 2 22 2333344444554321 2346778899999999999998888877
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--CCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC--IEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~--~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
.++.+.+ +.+.++.. .++.++++.|++ +||.+. +..|.. .+..++|++++. ++++++++++++|.++.
T Consensus 317 ~~~~~~~-~~i~~~~~------~~~~~l~~~L~~-~gI~v~-~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~ 387 (393)
T TIGR01822 317 KPADHPI-IPVMLYDA------VLAQRFARRLLE-EGIYVT-GFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIG 387 (393)
T ss_pred CCCCCCE-EEEEeCCH------HHHHHHHHHHHH-CCeeEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 6655553 44444432 257889999887 799998 555532 234579998865 37899999999999987
Q ss_pred HHhh
Q 042816 157 QTCK 160 (163)
Q Consensus 157 ~~~~ 160 (163)
+++.
T Consensus 388 ~~~~ 391 (393)
T TIGR01822 388 RELG 391 (393)
T ss_pred HHhC
Confidence 7654
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-11 Score=93.92 Aligned_cols=149 Identities=9% Similarity=0.073 Sum_probs=101.5
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQL- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 75 (163)
++ +|+|+||+++ ++++++.+..... .++.+++.|.++...++ ++.+ .++.+++.+.+.++.+.+.+ ++
T Consensus 290 l~-~G~pig~v~~-~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~-~~~~~~~g~~l~~~l~~l~~---~~~ 363 (451)
T PRK06918 290 LG-AGVPISGVIG-RKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENL-NDRAIELGKVVMNRFEEMKN---KYN 363 (451)
T ss_pred hc-CCCccEEEEE-cHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHh---hCC
Confidence 45 8999999999 8999888764433 25788888888555553 4433 56677777766666665544 23
Q ss_pred CCccccCCceeEEEeecCCc-ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGL-ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIR 153 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~ 153 (163)
.+....+.|+++.|...... ...+.......+.+.+.+ +||.+.|+..|+ +++|++++. ++++++++++++|.
T Consensus 364 ~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~Gvlv~~~~~~~----~~lrl~p~l~~t~~~id~~l~~l~ 438 (451)
T PRK06918 364 CIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANK-RGLLLLSAGTYG----NVIRVLMPLVITDEQLEEGLTIIE 438 (451)
T ss_pred CceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHH-CCeEEeecCCCC----CEEEEECCCccCHHHHHHHHHHHH
Confidence 23334567888887654211 001111234566666665 899999986663 689999865 68999999999999
Q ss_pred HHHHHhhh
Q 042816 154 RISQTCKS 161 (163)
Q Consensus 154 ~~~~~~~~ 161 (163)
+++.++.+
T Consensus 439 ~~l~~~~~ 446 (451)
T PRK06918 439 ESLQACYE 446 (451)
T ss_pred HHHHHHHH
Confidence 99987654
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-11 Score=95.74 Aligned_cols=150 Identities=11% Similarity=0.144 Sum_probs=106.0
Q ss_pred CCCceeE------EEEEecCHHHHHHHHHhhc----c--c-CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 042816 3 SLPGFRI------SVIYSYNNSVLAAAKKLAR----F--S-SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFV 69 (163)
Q Consensus 3 ~~~G~Ri------G~~i~~~~~~~~~~~~~~~----~--~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (163)
.++|+|+ ||++++++++.+.+++... + + +.+...|.+++..|.+... +.+.....+ ++++|.
T Consensus 255 ~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~-~~~~~~~~~----~~~~l~ 329 (460)
T PRK13238 255 TMSAKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMD-EDYLAYRIG----QVEYLG 329 (460)
T ss_pred EEecccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhC-hHHHHHHHH----HHHHHH
Confidence 4567775 3556534688888877641 2 2 2455558888877654211 233344333 579999
Q ss_pred HHhhhcCCccccCCceeEEEeecCCcc---cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCC-----------CceEEE
Q 042816 70 AGLRQLGIECAKSNGGFYCWADMSGLI---SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE-----------PGWFSF 135 (163)
Q Consensus 70 ~~l~~~g~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~-----------~~~iRi 135 (163)
+.|++.|+.+..|.||+|+++++.... .+.+. .+..|+.+|+++.||.+.|+..|..+. .+.+|+
T Consensus 330 ~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~-~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rl 408 (460)
T PRK13238 330 EGLEEAGVPIQTPAGGHAVFVDAGKFLPHIPAEQF-PAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRL 408 (460)
T ss_pred HHHHHCCCCeEccCCceEEEEEchhcCCCCCCCCC-chHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEE
Confidence 999999999999999999999986542 11122 458899999999999999988775322 479999
Q ss_pred EEec--CChhHHHHHHHHHHHHHHH
Q 042816 136 SFTL--LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 136 ~~~~--~~~~~l~~~~~~l~~~~~~ 158 (163)
++.. -+.+.++.+.++|.++.++
T Consensus 409 a~~rr~~~~~~~~~~~~~l~~~~~~ 433 (460)
T PRK13238 409 AIPRRVYTQSHMDYVAEALKAVKEN 433 (460)
T ss_pred ecccccCCHHHHHHHHHHHHHHHHh
Confidence 9974 2678899999999887643
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.9e-11 Score=93.62 Aligned_cols=145 Identities=8% Similarity=-0.025 Sum_probs=94.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSML---SDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
++ +|+|+||+++ ++++++.+..... .++.+++.|.++.+.+ +++.+ .++.++..+.++++.+.+.+.+. .
T Consensus 268 l~-~G~pig~v~~-~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~-~~~~~~~g~~l~~~L~~l~~~~~--~ 342 (420)
T TIGR00700 268 LA-DGLPLSGVTG-RAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGL-IERARQIGRLVTDRLTTLKAVDP--R 342 (420)
T ss_pred cc-CCcceEEEEe-cHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHhhCC--C
Confidence 45 8999999999 8999888754333 3578889998885554 43333 45555555555555444433221 2
Q ss_pred CccccCCceeEEEeecCCc-ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGL-ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
+....+. |.++|+++... ...+.......+.+.+.+ +||.+.|+..|+ +++||+++. ++++++++++++|.+
T Consensus 343 ~~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~-~Gv~i~p~~~f~----~~lRl~p~l~~~~~~l~~~~~~l~~ 416 (420)
T TIGR00700 343 IGDVRGL-GAMIAVELVDPGTTEPDAGLAERIATAAHA-AGLLLLTCGMFG----NIIRFLPPLTIGDELLSEGLDILCA 416 (420)
T ss_pred EEEeecc-ceEEEEEEecCCCCCccHHHHHHHHHHHHH-CCeEEeccCCCC----CEEEEECCCCcCHHHHHHHHHHHHH
Confidence 3334455 66778776321 000111234556666655 999999987774 689999864 588999999999998
Q ss_pred HHH
Q 042816 155 ISQ 157 (163)
Q Consensus 155 ~~~ 157 (163)
++.
T Consensus 417 ~l~ 419 (420)
T TIGR00700 417 ILA 419 (420)
T ss_pred Hhh
Confidence 874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=91.56 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=117.3
Q ss_pred CCCCceeEEEEEe--cCHHHHHHHHHhhcc-cCCChHHHHHHHHhcCCh-----H--HHHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYS--YNNSVLAAAKKLARF-SSVSAPSQNLLVSMLSDT-----K--FVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 2 ~~~~G~RiG~~i~--~~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~-----~--~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
+|-.|.|-||+-. -++++.+.+.+..+. .+++...|.....++.-+ . ......+...+.++.|...+.+.
T Consensus 299 ~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~ 378 (475)
T KOG0258|consen 299 MGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDA 378 (475)
T ss_pred eeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHH
Confidence 4567899999887 267888888888774 688888898887777543 1 12456678888999999999999
Q ss_pred hhhc-CCccccCCceeEEEeec--CCcc----cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEecCChh
Q 042816 72 LRQL-GIECAKSNGGFYCWADM--SGLI----SSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTLLTEK 143 (163)
Q Consensus 72 l~~~-g~~~~~~~~g~~~~~~~--~~~~----~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~~~~~ 143 (163)
+++. |+++.+++|.+|++.++ |... ...+...+.-+|.+||+..||.|+||++|+.. +.-++|..+.. +.
T Consensus 379 ~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp-~~- 456 (475)
T KOG0258|consen 379 FNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILP-PG- 456 (475)
T ss_pred HhhcCceeeccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecC-ch-
Confidence 9999 99999999999999654 5432 12344467888999999999999999999964 46699999985 32
Q ss_pred HHHHHHHHHHHHHH
Q 042816 144 DIHVVMERIRRISQ 157 (163)
Q Consensus 144 ~l~~~~~~l~~~~~ 157 (163)
+ +.+++++++-.
T Consensus 457 -~-~~i~~~~~fH~ 468 (475)
T KOG0258|consen 457 -L-EIIEKFKKFHA 468 (475)
T ss_pred -h-HHHHHHHHHHH
Confidence 4 66777666543
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.3e-11 Score=91.92 Aligned_cols=145 Identities=14% Similarity=0.210 Sum_probs=96.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcccCCChH----------HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAP----------SQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~----------~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
|+ +|.|+||+++ ++++++.+.+...+++.+.+ .+.++...+.+. .+++++.++.++.. +++.+.
T Consensus 210 ~~-~~g~~G~l~~-~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~l~~~~~~~~~~-~~l~~~ 283 (370)
T TIGR02539 210 MA-ASGPCGVLGM-SEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHV---VERVKRWDEEVKKT-RWFVAE 283 (370)
T ss_pred cc-CCCCEEEEEE-CHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHH
Confidence 45 5778999999 89999999887654332222 444444455432 35556666666665 589999
Q ss_pred hhhcCCcc--ccCCceeEEEeecCCccc--CCChhhHHHHHHHHHHhcCeE-EcCCCCCCCCCCceEEEEEecCChhHHH
Q 042816 72 LRQLGIEC--AKSNGGFYCWADMSGLIS--SYSEKGELELWDKLLNVAKVN-VTPGSSCHCIEPGWFSFSFTLLTEKDIH 146 (163)
Q Consensus 72 l~~~g~~~--~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~gi~-v~pg~~f~~~~~~~iRi~~~~~~~~~l~ 146 (163)
|++.|+++ ..|..+.|+++++|.... .....+...+.+.|.+ +||. +.|| .++++|+++...++++++
T Consensus 284 L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e-~GI~~ir~~------~~~~iRis~~~~t~e~i~ 356 (370)
T TIGR02539 284 LEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKK-RGIHGIRSG------QTKYFKLSVYGLTKEQVE 356 (370)
T ss_pred HHhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHh-CCCccccCC------cceEEEEEecCCCHHHHH
Confidence 99998875 235667788888873200 0000134568887776 7997 5542 156999997445889999
Q ss_pred HHHHHHHHHHHHh
Q 042816 147 VVMERIRRISQTC 159 (163)
Q Consensus 147 ~~~~~l~~~~~~~ 159 (163)
.+++.|.++++++
T Consensus 357 ~l~~~L~~~~~~~ 369 (370)
T TIGR02539 357 YVVDSFEEIVEEY 369 (370)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887653
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.8e-11 Score=89.87 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=99.1
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhh-------------------cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLA-------------------RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRR 63 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~-------------------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 63 (163)
|++| +||+++ ++++++.+.... ..++++.+.+.++..+++.-.. +..+++..+.+++
T Consensus 191 ~~~G--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~-~g~~~~~~~~~~~ 266 (355)
T TIGR03301 191 GVPG--FGFVIA-RRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEA-EGGVPARIARYRR 266 (355)
T ss_pred cCCc--eeEEEE-CHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHH-cccHHHHHHHHHH
Confidence 5566 699999 889888876211 1235676776766666653210 1225677778899
Q ss_pred HHHHHHHHhhhcCCccccC---CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE-ec
Q 042816 64 LYVKFVAGLRQLGIECAKS---NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF-TL 139 (163)
Q Consensus 64 ~~~~l~~~l~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~-~~ 139 (163)
+++++.+.|++.|+++..+ .+++++|+.+|..- . .+..++.+.|.+ +||.+.||..+. .+++||++ ..
T Consensus 267 ~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~l~~-~gi~i~~~~~~~---~~~iRis~~~~ 338 (355)
T TIGR03301 267 NRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDP---D-FDFDDFYQELKE-RGFVIYPGKLTL---ADTFRIGTIGE 338 (355)
T ss_pred HHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCC---c-chHHHHHHHHHH-CCEEEECCcccc---ccEEEEecCCC
Confidence 9999999999888775433 35667888887520 0 145688888776 899999987654 37999997 44
Q ss_pred CChhHHHHHHHHHHHH
Q 042816 140 LTEKDIHVVMERIRRI 155 (163)
Q Consensus 140 ~~~~~l~~~~~~l~~~ 155 (163)
.+.++++.+++.|+++
T Consensus 339 ~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 339 IDAADIERLLEAIKDA 354 (355)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 5789999999998865
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-11 Score=92.75 Aligned_cols=138 Identities=13% Similarity=0.076 Sum_probs=99.9
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
+| +|+|+||+++ ++++++.+..... .++.+++.|.++...|+.- .+ +...+.+.++.+++.+.|++.+...
T Consensus 254 l~-~G~~ig~~~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~---~~--~~~~~~~~~~~~~l~~~L~~~~~~~ 326 (398)
T PRK03244 254 LG-GGLPIGACLA-FGPAADLLTPGLHGSTFGGNPVACAAALAVLDTI---AS--EGLLENAERLGEQLRAGIEALGHPL 326 (398)
T ss_pred hh-CCcccEEEEE-cHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45 7999999999 8888888765333 3578899999888887521 10 1234455555666777777754321
Q ss_pred --ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 80 --AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 80 --~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
.....|.++|+.++.. ....+.+.|++ +||.+.|. .++.+|++++. +++++++++++.|.+++
T Consensus 327 ~~~v~g~g~~~~i~~~~~-------~~~~~~~~l~~-~Gv~~~~~------~~~~iR~~p~~~~t~~~i~~~~~~l~~~l 392 (398)
T PRK03244 327 VDHVRGRGLLLGIVLTAP-------VAKAVEAAARE-AGFLVNAV------APDVIRLAPPLIITDAQVDAFVAALPAIL 392 (398)
T ss_pred eeeEeeccEEEEEEEecc-------HHHHHHHHHHH-CCeEEeec------CCCEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 1224788999998642 46788888876 89999873 14789999765 68899999999999999
Q ss_pred HHhh
Q 042816 157 QTCK 160 (163)
Q Consensus 157 ~~~~ 160 (163)
.+.+
T Consensus 393 ~~~~ 396 (398)
T PRK03244 393 DAAA 396 (398)
T ss_pred Hhcc
Confidence 8754
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.1e-11 Score=91.18 Aligned_cols=133 Identities=14% Similarity=0.172 Sum_probs=96.3
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG--- 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g--- 76 (163)
+|++|+|+||+++ ++++++.+..... .++.+++.|.++...|+.- ++ +...+...++.+++.+.|++++
T Consensus 257 lg~gg~~ig~~~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~---~~--~~l~~~~~~~~~~l~~~L~~l~~~~ 330 (396)
T PRK04073 257 LGGGVFPISCVAA-NRDILGVFTPGSHGSTFGGNPLACAVSIAALEVL---EE--EKLPERSLELGEYFKEQLKEIDNPM 330 (396)
T ss_pred ccCCCCcceEEEE-cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHhhcCCc
Confidence 6888999999999 8999988865333 3568889999888888632 11 1233455566777888777752
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRI 155 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~ 155 (163)
+...++. |.+++++++. ++.++++.|++ +||.+.|. +++++||+.. .++++++++++++|.++
T Consensus 331 i~~~~~~-g~~~~~~~~~--------~~~~~~~~l~~-~Gv~~~~~------~~~~iRi~p~l~~t~e~i~~~~~~l~~~ 394 (396)
T PRK04073 331 IKEVRGR-GLFIGVELNE--------PARPYCEALKE-EGLLCKET------HETVIRFAPPLVITKEELDWAFEKIKAV 394 (396)
T ss_pred ccceecc-eEEEEEEecc--------hHHHHHHHHHH-CCeEEecC------CCCEEEEECCcccCHHHHHHHHHHHHHH
Confidence 4444455 5568888864 56788988876 89999763 1479999953 23889999999999887
Q ss_pred H
Q 042816 156 S 156 (163)
Q Consensus 156 ~ 156 (163)
+
T Consensus 395 l 395 (396)
T PRK04073 395 L 395 (396)
T ss_pred h
Confidence 5
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-10 Score=89.02 Aligned_cols=144 Identities=15% Similarity=0.061 Sum_probs=102.5
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
||++| ||+++ ++++++.+...... .+.++..+.++...|+.- .+. +..++.+.++.+++.+.|++.|+
T Consensus 249 ~g~~G---G~i~~-~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~---~~~-~~~~~~~~~~~~~l~~~L~~~g~ 320 (402)
T TIGR01821 249 FGVVG---GYIAA-SRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHL---KES-QDLRRAHQENVKRLKNLLEALGI 320 (402)
T ss_pred hccCC---ceeec-CHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHh---hcC-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 56666 99999 89999988766542 235666777776776542 222 44555667888999999998898
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
++.++.+++ +.+.++.. ..+.++++.|++++||.+.|......+ +.+++||++.. +++++++++++.|.++
T Consensus 321 ~~~~~~~~i-~~i~~~~~------~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~ 393 (402)
T TIGR01821 321 PVIPNPSHI-VPVIIGDA------ALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLV 393 (402)
T ss_pred CcCCCCCCE-EEEEeCCH------HHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 888777765 44455431 146788888877579999986533322 35799999853 4889999999999998
Q ss_pred HHHhh
Q 042816 156 SQTCK 160 (163)
Q Consensus 156 ~~~~~ 160 (163)
++++.
T Consensus 394 ~~~~~ 398 (402)
T TIGR01821 394 WDRLG 398 (402)
T ss_pred HHHcC
Confidence 87653
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-10 Score=89.06 Aligned_cols=143 Identities=16% Similarity=0.118 Sum_probs=101.2
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
||++| ||+++ ++++++.+...... .+.++..+.++...++.- ++. ...++.+.++++++.+.|++.|+
T Consensus 250 ~g~~G---G~~~~-~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~---~~~-~~~~~~~~~~~~~l~~~L~~~g~ 321 (407)
T PRK09064 250 FGVMG---GYIAG-SAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHL---KES-NEERERHQERAAKLKAALDAAGI 321 (407)
T ss_pred hhccC---ceEec-CHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHH---hcC-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 56666 99999 89999988776542 134555565555555432 222 34467888899999999999888
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
++.++.++ ++++.++.. .++.++.+.|++++||.|.+......+ +.+++||++.. ++.++++.+++.|.++
T Consensus 322 ~~~~~~~~-iv~i~~~~~------~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~ 394 (407)
T PRK09064 322 PVMPNESH-IVPVMVGDP------EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEV 394 (407)
T ss_pred CCCCCCCC-EEEEEeCCH------HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 88776655 455555431 256789988876579999986543322 34789999863 4889999999999998
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+.++
T Consensus 395 ~~~~ 398 (407)
T PRK09064 395 WARL 398 (407)
T ss_pred HHHc
Confidence 8764
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.3e-10 Score=85.25 Aligned_cols=144 Identities=17% Similarity=0.142 Sum_probs=97.5
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc-------------------cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF-------------------SSVSAPSQNLLVSMLSDTKFVQKFININRERLRR 63 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~-------------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 63 (163)
|.|| +||+++ ++++++.+...... ++++.+.+.++..++..-.. ...+++..+.+.+
T Consensus 197 g~~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~-~~~~~~~~~~~~~ 272 (368)
T PRK13479 197 GVPG--FGFVIA-RRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEE-EGGVPARGARYAN 272 (368)
T ss_pred cCCC--ceEEEE-CHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHH-hhCHHHHHHHHHH
Confidence 6677 599999 88888876653211 24555554444444432110 1234666788899
Q ss_pred HHHHHHHHhhhcCCccccCC-----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE-
Q 042816 64 LYVKFVAGLRQLGIECAKSN-----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF- 137 (163)
Q Consensus 64 ~~~~l~~~l~~~g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~- 137 (163)
+++.+.+.|+++|+++..+. +...+++.-++.+ +..++.+.|.+ +||.|.+|..+. .+++|++.
T Consensus 273 ~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~-~gi~v~~g~~~~---~~~iRis~~ 342 (368)
T PRK13479 273 NQRTLVAGMRALGFEPLLDAEIQSPIIVTFHAPADPAY------DFKEFYERLKE-QGFVIYPGKLTQ---VDTFRIGCI 342 (368)
T ss_pred HHHHHHHHHHHcCCcccCCchhcCceEEEEECCCCCCc------CHHHHHHHHHH-CCEEEecCCCCC---CCEEEEecC
Confidence 99999999999887765332 1233443222212 56788888876 899999986542 56899985
Q ss_pred ecCChhHHHHHHHHHHHHHHHhh
Q 042816 138 TLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 138 ~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+..+.++++.+++.|.++++++.
T Consensus 343 ~~~t~edi~~~l~~L~~~l~~~~ 365 (368)
T PRK13479 343 GDVDAADIRRLVAAIAEALYWMG 365 (368)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC
Confidence 66688999999999999988754
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.8e-10 Score=87.41 Aligned_cols=144 Identities=16% Similarity=0.137 Sum_probs=92.2
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSD---TKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
++.+++|+||+++ ++++++.+..... .++.+++.|.++...++. +.+ .++.++..+.++++ +.+.+...+
T Consensus 249 l~~g~~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~-~~~~~~~~~~l~~~---l~~l~~~~~ 323 (400)
T PTZ00125 249 LSGGLYPISAVLA-NDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKL-AENAQRLGEVFRDG---LKELLKKSP 323 (400)
T ss_pred ccCCCcCcEEEEE-cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHH---HHHHHhcCC
Confidence 4444469999999 8999988865433 246778888877665532 211 22333333322222 222223233
Q ss_pred -CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHH
Q 042816 77 -IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRR 154 (163)
Q Consensus 77 -~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~ 154 (163)
+....+ .|.++|+.++..- + .+..++++.|++ +||.+.|+. ++++||+.. .++++++++++++|.+
T Consensus 324 ~~~~~~~-~g~~~~v~~~~~~---~-~~~~~~~~~l~~-~Gv~v~~~~------~~~lRi~~~~~~~~~~i~~~l~~l~~ 391 (400)
T PTZ00125 324 WVKEIRG-KGLLNAIVFDHSD---G-VNAWDLCLKLKE-NGLLAKPTH------DNIIRFAPPLVITKEQLDQALEIIKK 391 (400)
T ss_pred CeEEEec-ccEEEEEEEccCc---c-hHHHHHHHHHHH-CCeEEeecC------CCEEEEECCccCCHHHHHHHHHHHHH
Confidence 222344 5667777776310 0 256788998886 899998852 579999964 2488999999999999
Q ss_pred HHHHhhhc
Q 042816 155 ISQTCKSH 162 (163)
Q Consensus 155 ~~~~~~~~ 162 (163)
++.++.++
T Consensus 392 ~l~~~~~~ 399 (400)
T PTZ00125 392 VLKSFDSN 399 (400)
T ss_pred HHHHHhcC
Confidence 99988765
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-09 Score=84.36 Aligned_cols=138 Identities=17% Similarity=0.126 Sum_probs=96.6
Q ss_pred eEEEEEecCHHHHHHHHHhhc-c--cC-CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC
Q 042816 8 RISVIYSYNNSVLAAAKKLAR-F--SS-VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSN 83 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~~-~--~~-~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 83 (163)
+.||+++ ++++++.+..... + .+ .+++.|.++...++.- .+. ....+.+.++++++.+.|++.|+++..|+
T Consensus 238 ~gG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 312 (385)
T TIGR01825 238 VGGYAAG-HKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDEL---QRS-PELMERLWDNTRFFKAGLGKLGYDTGGSE 312 (385)
T ss_pred CCCEEec-CHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHH---hcC-HHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 3399999 8999999876643 2 22 4556677766666432 111 23556667789999999988898888887
Q ss_pred ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--CCCceEEEEEe-cCChhHHHHHHHHHHHHHHHh
Q 042816 84 GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC--IEPGWFSFSFT-LLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~--~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~~~~ 159 (163)
+.+ +++.++.. .++.++++.|++ +||.+. +..|.. .+.+++|+++. .++++++++++++|.++++++
T Consensus 313 ~~~-~~~~~~~~------~~~~~~~~~L~~-~gi~v~-~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~~ 382 (385)
T TIGR01825 313 TPI-TPVVIGDE------KAAQEFSRRLFD-EGIFAQ-SIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKEL 382 (385)
T ss_pred CCE-EEEEECCH------HHHHHHHHHHHH-CCcEEc-ccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHHh
Confidence 764 33344421 256789999987 599985 445542 23579999874 358899999999999988764
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=86.37 Aligned_cols=143 Identities=15% Similarity=0.218 Sum_probs=101.5
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCC---hHHHH----HHHHHHHHHHHHHHHHHHHHhh
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSD---TKFVQ----KFININRERLRRLYVKFVAGLR 73 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~---~~~~~----~~~~~~~~~~~~~~~~l~~~l~ 73 (163)
|=+|.|+||++..++++.+.+.++... .++|.=.|.-+.++|+. +.-.. ...+--++.+++|.+.|.+.+.
T Consensus 197 GHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~ 276 (363)
T PF04864_consen 197 GHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVS 276 (363)
T ss_dssp S-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999884 68999999877777753 10001 3667888899999999999997
Q ss_pred hcC-Cccc-------------cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec
Q 042816 74 QLG-IECA-------------KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL 139 (163)
Q Consensus 74 ~~g-~~~~-------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~ 139 (163)
..+ ++.. ...+.-|.|+++... +..+... +++++||..+.|..|+. ++.|+|||+..
T Consensus 277 ~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~e-------ed~DC~~-~l~~~~I~tr~G~~fga-~~ryVRlSml~ 347 (363)
T PF04864_consen 277 ASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCERE-------EDEDCYA-VLREAKIITRSGVLFGA-DSRYVRLSMLK 347 (363)
T ss_dssp CSSSEEE---SCEEETTTTCEEE---SEEEEEESSC-------GGSSHHH-HHHCTTEEEEEGGGGTS--TTEEEEESSS
T ss_pred hcCceecCcCCchhccccccccCCCCCeEEEecCCc-------ccccHHH-HHHhCCcccCCCCccCC-CCCeEEEeccC
Confidence 752 2221 122455899999852 2344444 44569999999999996 47999999998
Q ss_pred CChhHHHHHHHHHHHH
Q 042816 140 LTEKDIHVVMERIRRI 155 (163)
Q Consensus 140 ~~~~~l~~~~~~l~~~ 155 (163)
.+++++..+++|...
T Consensus 348 -~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 348 -RDDDFDQLLERLSKL 362 (363)
T ss_dssp --HHHHHHHHHHHHCC
T ss_pred -CHHHHHHHHHHHHhh
Confidence 889999999998753
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=85.25 Aligned_cols=143 Identities=12% Similarity=0.079 Sum_probs=96.3
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL---- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---- 75 (163)
++ +|+|+||+++ ++++++.+..... .++.+++.|.++...|+.- ++ +...+.++++.+++.+.|++.
T Consensus 269 l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~---~~--~~l~~~~~~~g~~l~~~L~~l~~~~ 341 (421)
T PRK06777 269 LG-GGMPISAVVG-RAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVI---AE--EKLCQRALILGAHLVEVLEKAKASC 341 (421)
T ss_pred hc-CCCceEEEEE-cHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45 7999999999 8999888765433 2567999999888888632 11 345555666666666666553
Q ss_pred -CCccccCCceeEEE-eecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHH
Q 042816 76 -GIECAKSNGGFYCW-ADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERI 152 (163)
Q Consensus 76 -g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l 152 (163)
.+...++.|.++.+ ++.+.. +.+...-...+.+.+++ +||.+.|+..|+ +++||+.. .++++++++++++|
T Consensus 342 ~~i~~vrg~G~~~~i~~~~~~~-~~~~~~~~~~l~~~~~~-~Gv~i~~~~~~g----~~lr~~ppl~i~~~~i~~~~~~l 415 (421)
T PRK06777 342 PAIVDIRARGSMVAVEFNDPQT-GKPSPEFTRQYQRQALE-EGLLLLSCGVHG----NVIRFLYPLTIPDAQFSKALNIL 415 (421)
T ss_pred CCeEEecCceEEEEEEEecCcc-CCccHHHHHHHHHHHHh-CCeEEeecCCCC----CEEEEeCCCCCCHHHHHHHHHHH
Confidence 24456788888864 332211 01111123445555565 999999986664 58999985 24899999999999
Q ss_pred HHHHH
Q 042816 153 RRISQ 157 (163)
Q Consensus 153 ~~~~~ 157 (163)
.+++.
T Consensus 416 ~~~l~ 420 (421)
T PRK06777 416 TRLLA 420 (421)
T ss_pred HHHHh
Confidence 98864
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-09 Score=82.11 Aligned_cols=139 Identities=15% Similarity=0.104 Sum_probs=95.7
Q ss_pred eeEEEEEecCHHHHHHHHH---hh-----------------ccc-CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 042816 7 FRISVIYSYNNSVLAAAKK---LA-----------------RFS-SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLY 65 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~---~~-----------------~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 65 (163)
.++||++. ++++++.+.. .. ... +++...+.++..+++.-. ...+++..+..+++.
T Consensus 192 ~g~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~--~~~~~~~~~~~~~~~ 268 (356)
T cd06451 192 PGLGPIAF-SERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLIL--EEGLENRWARHRRLA 268 (356)
T ss_pred CCcceeEE-CHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHH
Confidence 36899999 8888887763 00 011 233333444444543321 233567778888999
Q ss_pred HHHHHHhhhcCCccccC---CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CC
Q 042816 66 VKFVAGLRQLGIECAKS---NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LT 141 (163)
Q Consensus 66 ~~l~~~l~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~ 141 (163)
+++.+.|...|+++..+ .++.++|+.++... +..++++.|.+++||.+.||..+. .++++|+++.. .+
T Consensus 269 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~L~~~~gI~~~~g~~~~--~~~~iRis~~~~~~ 340 (356)
T cd06451 269 KALREGLEALGLKLLAKPELRSPTVTAVLVPEGV------DGDEVVRRLMKRYNIEIAGGLGPT--AGKVFRIGHMGEAT 340 (356)
T ss_pred HHHHHHHHHcCCeeccCcccCCCceEEEECCCCC------CHHHHHHHHHHhCCEEEecccccc--cCCEEEEecCCCCC
Confidence 99999999888777542 24556677777543 678899988873499999987543 25799999964 37
Q ss_pred hhHHHHHHHHHHHHH
Q 042816 142 EKDIHVVMERIRRIS 156 (163)
Q Consensus 142 ~~~l~~~~~~l~~~~ 156 (163)
+++++.+++.|.+++
T Consensus 341 ~e~v~~~~~~l~~~~ 355 (356)
T cd06451 341 REDVLGVLSALEEAL 355 (356)
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999999998865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-09 Score=83.99 Aligned_cols=143 Identities=14% Similarity=0.103 Sum_probs=100.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc---c-CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF---S-SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~---~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
||++| ||+++ ++++++.+...... . +.++..+.++...|+.. ++. ...+..+.++.+++.+.|++.|+
T Consensus 249 ~g~~G---G~~~~-~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~---~~~-~~~~~~~~~~~~~l~~~L~~~g~ 320 (406)
T PRK13393 249 FGVMG---GYITG-SAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHL---KAS-SAERERHQDRVARLRARLDKAGI 320 (406)
T ss_pred hcccC---ceeeC-CHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHH---hhC-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 45666 99998 89999988876542 2 34555676676666542 222 23346678889999999988888
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
++.++.+.++. +.++.. .++.++.+.|++++||.+.++.....+ +.+++||++.. +++++++++++.|.++
T Consensus 321 ~~~~~~~~i~~-v~~~~~------~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~ 393 (406)
T PRK13393 321 PHLPNPSHIVP-VMVGDP------VLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEI 393 (406)
T ss_pred CcCCCCCCeEE-EEeCCH------HHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 77777777543 344321 256788888887579999987543322 35789999963 4889999999999998
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+.++
T Consensus 394 ~~~~ 397 (406)
T PRK13393 394 WARL 397 (406)
T ss_pred HHhc
Confidence 7764
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-09 Score=82.66 Aligned_cols=136 Identities=18% Similarity=0.129 Sum_probs=96.7
Q ss_pred eEEEEEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC
Q 042816 8 RISVIYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSN 83 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 83 (163)
+.||+++ ++++++.+...... .+.+++.+.++...++.. .+ .+..++.+.++++.+.+.|.+.|+....+.
T Consensus 207 ~gG~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 281 (349)
T cd06454 207 VGGYIAG-SKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVL---QG-GPERRERLQENVRYLRRGLKELGFPVGGSP 281 (349)
T ss_pred cCCEEEC-CHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence 4499999 88988887765442 245566666666666542 22 356788899999999999998888777666
Q ss_pred ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-CCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 84 GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH-CIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~-~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
+++..++.++.. .+..++.+.|++ +||.+.++.... ....+++|++++. .+.+++++++++|.++
T Consensus 282 ~~~~~~~~~~~~------~~~~~~~~~L~~-~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 282 SHIIPPLIGDDP------AKAVAFSDALLE-RGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred CCcEEEEeCCCh------HHHHHHHHHHHh-CCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 666555544422 267889998887 699999863221 1225799999974 4889999999998764
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-09 Score=82.06 Aligned_cols=142 Identities=16% Similarity=0.176 Sum_probs=98.6
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhh--------------------cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLA--------------------RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLR 62 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~--------------------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 62 (163)
|.|| +||+++ ++++++.+.... ..++++.+.+.++.++++.-.. +..++...+.+.
T Consensus 195 ~p~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~-~g~~~~~~~~~~ 270 (363)
T TIGR02326 195 GVPG--FGFVIA-RQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEK-EGGVAARHQRYQ 270 (363)
T ss_pred cCCc--ceEEEE-CHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHH-hhCHHHHHHHHH
Confidence 4455 699999 888777643210 1135667777776655543210 122466788999
Q ss_pred HHHHHHHHHhhhcCCccccC---CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE-e
Q 042816 63 RLYVKFVAGLRQLGIECAKS---NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF-T 138 (163)
Q Consensus 63 ~~~~~l~~~l~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~-~ 138 (163)
++++++.+.|+++|++...+ .++...|+.++... + .+..++.+.|.+ +||.+.||..+. .+++||++ +
T Consensus 271 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~v~~~L~~-~gi~v~~g~~~~---~~~iRi~~~~ 342 (363)
T TIGR02326 271 QNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDP---D-YRFADFYQRLKE-QGFVIYPGKVSQ---VDCFRIGNIG 342 (363)
T ss_pred HHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCC---C-CCHHHHHHHHHH-CCEEEECCcCCC---CCEEEEecCC
Confidence 99999999998888766533 45666777877520 0 155778888765 899999998663 57999995 6
Q ss_pred cCChhHHHHHHHHHHHHH
Q 042816 139 LLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 139 ~~~~~~l~~~~~~l~~~~ 156 (163)
..+.++++.+++.|.+++
T Consensus 343 ~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 343 EVDAADITRLLTAIGKAM 360 (363)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 568899999999998865
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-09 Score=81.40 Aligned_cols=133 Identities=17% Similarity=0.298 Sum_probs=105.1
Q ss_pred CCCCCceeEEEEEe--cCHHHHHHHHHhhc------ccCCChHHHHHHHHhcCChH----HHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYS--YNNSVLAAAKKLAR------FSSVSAPSQNLLVSMLSDTK----FVQKFININRERLRRLYVKF 68 (163)
Q Consensus 1 ~~~~~G~RiG~~i~--~~~~~~~~~~~~~~------~~~~s~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~l 68 (163)
.||+-|-|+|.+.+ .+.+.+..+..... +++++.-...+++.+|++++ | .++++.+++.+.++|+.+
T Consensus 247 nfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W-~~El~~Mr~Ri~~mR~~l 325 (396)
T COG1448 247 NFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEW-EQELEEMRQRILEMRQAL 325 (396)
T ss_pred hhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 48899999999766 46665554433322 35677788899999999975 5 677899999999999999
Q ss_pred HHHhhhc----CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhH
Q 042816 69 VAGLRQL----GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKD 144 (163)
Q Consensus 69 ~~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~ 144 (163)
++.|++. .+++...+.|||.+.-+. .+-+..|.+++||+++.+ + |||++.++..+
T Consensus 326 v~~L~~~~~~~~f~~i~~Q~GMFsy~Gls-----------~~QV~rLree~~IY~v~s--------G--Ri~vaGl~~~n 384 (396)
T COG1448 326 VDALKALGAPRNFDFIISQRGMFSYTGLS-----------PEQVDRLREEFGIYLVAS--------G--RINVAGLNTSN 384 (396)
T ss_pred HHHHHhhCCCcccchHhhcCceeecCCCC-----------HHHHHHHHHhccEEEecC--------C--eeeeccCChhh
Confidence 9999995 488999999999987443 445556888899998742 1 99999999999
Q ss_pred HHHHHHHHHHH
Q 042816 145 IHVVMERIRRI 155 (163)
Q Consensus 145 l~~~~~~l~~~ 155 (163)
++...+.|.++
T Consensus 385 i~~va~ai~~v 395 (396)
T COG1448 385 IDYVAKAIAAV 395 (396)
T ss_pred HHHHHHHHHhh
Confidence 98888888765
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-09 Score=83.71 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=100.6
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--Cc--
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG--IE-- 78 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g--~~-- 78 (163)
+|+|+||+++ ++++++.+..... .++.+++.|.++.+.|+.- . .+..++.++++.+++.+.|++.+ ..
T Consensus 256 gG~~ig~~~~-~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l---~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~ 329 (406)
T PRK12381 256 GGFPIGAMLT-TEKCASVMTVGTHGTTYGGNPLASAVAGKVLELI---N--TPEMLNGVKQRHDWFVERLNTINARYGLF 329 (406)
T ss_pred CCCceEEEEE-cHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH---h--hccHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence 7999999999 8999988865433 2467888888887766431 1 13466777788888888887752 22
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
......|+++|++++.... .....+.+.|.+ +||.+.++ +++.+|++++. ++++++++++++|.+++.
T Consensus 330 ~~vrg~Gl~~~~~l~~~~~----~~~~~~~~~l~~-~Gv~v~~~------g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~ 398 (406)
T PRK12381 330 SEIRGLGLLIGCVLNAEYA----GKAKQISQEAAK-AGVMVLIA------GPNVVRFAPALNISEEEITTGLDRFARACE 398 (406)
T ss_pred EEEecCeEEEEEEecCchh----hHHHHHHHHHHH-CCcEEeeC------CCCEEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence 1223457888988865210 134677777765 89999763 14689999875 589999999999999998
Q ss_pred Hhhh
Q 042816 158 TCKS 161 (163)
Q Consensus 158 ~~~~ 161 (163)
++.+
T Consensus 399 ~~~~ 402 (406)
T PRK12381 399 RFVS 402 (406)
T ss_pred HHHh
Confidence 7654
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=84.57 Aligned_cols=140 Identities=11% Similarity=0.077 Sum_probs=88.3
Q ss_pred CCCCceeEEEEEecCHHHHHHH--HHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Q 042816 2 LSLPGFRISVIYSYNNSVLAAA--KKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~--~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 75 (163)
++. |+|+||+++ ++++++.+ ..... .++.+++.|.++...++.- ++ ....+.+.++.+++.+.|+..
T Consensus 262 l~~-g~~~g~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l---~~--~~~~~~~~~~~~~l~~~l~~~~~ 334 (413)
T cd00610 262 LGG-GLPLGAVLG-REEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVL---EE--EGLLENAAELGEYLRERLRELAE 334 (413)
T ss_pred ccC-ccccEEEEE-cHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHh
Confidence 454 799999999 89998886 22222 2467778887776666421 11 233344444555555555443
Q ss_pred --CCccccCCceeEEEeecCCccc--CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHH
Q 042816 76 --GIECAKSNGGFYCWADMSGLIS--SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVME 150 (163)
Q Consensus 76 --g~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~ 150 (163)
+........|.++|+.++.... .........+++.|.+ +||.+.|+. ++.+|++++. +++++++++++
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~v~~~~------~~~lR~~~~~~~t~~~i~~~~~ 407 (413)
T cd00610 335 KHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALE-RGLLLRPSG------GNVIRLLPPLIITEEEIDEGLD 407 (413)
T ss_pred hCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHH-CCeEEeecC------CCEEEEECCCcCCHHHHHHHHH
Confidence 1111123456777878764210 0011256788888876 899999974 4789998865 47899999999
Q ss_pred HHHHH
Q 042816 151 RIRRI 155 (163)
Q Consensus 151 ~l~~~ 155 (163)
+|.++
T Consensus 408 ~l~~~ 412 (413)
T cd00610 408 ALDEA 412 (413)
T ss_pred HHHHh
Confidence 99875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.7e-09 Score=81.94 Aligned_cols=145 Identities=20% Similarity=0.227 Sum_probs=99.1
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhh---------------------cc--cCCChHHHHHHHHhcCChHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLA---------------------RF--SSVSAPSQNLLVSMLSDTKFVQKFININR 58 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~---------------------~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 58 (163)
||.+| +||+++ ++++++.+.... .+ .+++.+.+.++..+++.-. +.-..+.+
T Consensus 224 ~gp~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~--~~g~~~~~ 298 (401)
T PRK10874 224 YGPTG--IGVLYG-KSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLA--DIDINQAE 298 (401)
T ss_pred cCCCc--cEEEEE-chHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHH--HhCHHHHH
Confidence 56666 599999 888887654221 01 1345556666665554211 12234567
Q ss_pred HHHHHHHHHHHHHhhhc-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC------CCCc
Q 042816 59 ERLRRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------IEPG 131 (163)
Q Consensus 59 ~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------~~~~ 131 (163)
++.++.++++.+.|+++ |+....+..+..+++.++.. +..++.+.|.+ +||.|.+|..+.. ..++
T Consensus 299 ~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~-------~~~~~~~~L~~-~gI~v~~g~~~~~~~~~~~g~~~ 370 (401)
T PRK10874 299 SWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGV-------HHSDLVTLLAE-YGIALRAGQHCAQPLLAALGVTG 370 (401)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCc-------CHHHHHHHHHH-CCcEEeccccchHHHHHHhCCCC
Confidence 77778889999999888 88776555555666677642 55788887765 8999999986642 1257
Q ss_pred eEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 132 WFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 132 ~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
++|+|+.. .++++++..++.|.++++.+
T Consensus 371 ~iRiS~~~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 371 TLRASFAPYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 99999974 37789999999999887764
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.3e-09 Score=82.24 Aligned_cols=141 Identities=9% Similarity=0.073 Sum_probs=91.5
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLV---SMLSDTKFVQKFININRERLRRLYVKFVAGL-RQLGIE 78 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~ 78 (163)
+|+++||+++ ++++.+.+..... .++.+++.|.++. .+++++ +++++.++. .++.....+.+ ++++.
T Consensus 271 ~G~pigav~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~----~~~~~~~~~-g~~l~~~l~~l~~~~p~- 343 (421)
T PRK09792 271 GGMPLSGVVG-NANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKE----SLCERANQL-GQRLKNTLIDAKESVPA- 343 (421)
T ss_pred CCCceEEEEE-cHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhh----hHHHHHHHH-HHHHHHHHHHHHHhCCC-
Confidence 7899999999 9999888754332 2567888888444 445443 344444432 33333223333 33343
Q ss_pred cccCCc-eeEEEeecCCcc-cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 79 CAKSNG-GFYCWADMSGLI-SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~-g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
+..+.| |+++|++++..- ..+.......+++.+++ +||.+.+.. ...+.+|+..+. ++++++++++++|.++
T Consensus 344 v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~-~Gv~i~~~g----~~~~~irl~P~l~i~~~ei~~~~~~l~~~ 418 (421)
T PRK09792 344 IAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALA-QGLLLLTCG----AYGNVIRFLYPLTIPDAQFDAAMKILQDA 418 (421)
T ss_pred cceecccceEEEEEecCCccCCcchHHHHHHHHHHHH-CCcEEeecC----CCCCEEEEeCCCcCCHHHHHHHHHHHHHH
Confidence 445677 999999997431 11111245678888876 899996421 125789999876 6899999999999988
Q ss_pred HH
Q 042816 156 SQ 157 (163)
Q Consensus 156 ~~ 157 (163)
+.
T Consensus 419 l~ 420 (421)
T PRK09792 419 LS 420 (421)
T ss_pred Hh
Confidence 74
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.6e-09 Score=79.01 Aligned_cols=133 Identities=14% Similarity=0.211 Sum_probs=88.5
Q ss_pred eEEE-EEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc--ccc
Q 042816 8 RISV-IYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE--CAK 81 (163)
Q Consensus 8 RiG~-~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~--~~~ 81 (163)
++|| ++. ++++++.+....... +++.+.+.++..+.. ++++.++.++. .++++.+.+.|+++ ++. +.+
T Consensus 213 ~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~-~~~~~~l~~~L~~~~~~~~~~~~ 286 (353)
T PLN02721 213 PVGSVIVG-SKSFIRKAKRLRKTLGGGMRQVGVLAAAALVA----LQENVPKLEDD-HKKAKLLAEGLNQIKGLRVNVAA 286 (353)
T ss_pred ceeeEEec-CHHHHHhHHHHHHhcCCCeehhHHHHHHHHHH----HHHHHHHHHHH-HHHHHHHHHHHHhCCCcEEecCC
Confidence 4776 556 899988877666532 233333332222211 13444444444 45678899999988 774 445
Q ss_pred CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHHHHH
Q 042816 82 SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~~~ 158 (163)
|.++ ++|++++... + .+...+++.|.+ +||.+.|+. ++++|++++ ..++++++++++.|.+++..
T Consensus 287 ~~~~-~~~~~~~~~~---~-~~~~~~~~~L~~-~gi~v~~~~------~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 287 VETN-IVYFDITDGS---R-ITAEKLCKSLEE-HGVLLMPGN------SSRIRVVTHHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred ccce-EEEEEccCCc---c-ccHHHHHHHHHh-CCcEEecCC------CceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence 5554 6999987520 0 156889999875 999999973 568999997 45889999999999987754
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.5e-09 Score=82.72 Aligned_cols=147 Identities=13% Similarity=0.111 Sum_probs=97.3
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhh---c--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLA---R--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~---~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
+| +|+|+||+++ ++++++.+.... . .++.+++.|.++...|+.-+. +.+.+..++...+.++.+.+.+++++
T Consensus 265 l~-~G~pig~v~~-~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (423)
T TIGR00713 265 IG-GGLPVGAFGG-RREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDE-EGVYTELDELAKRLAEGLSEVLEDTG 341 (423)
T ss_pred hc-CCCceeeeeE-HHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45 7999999999 899999886432 1 246788888887777753210 23566777777788888888888876
Q ss_pred Cccc-cCCceeE-EEeecCCcc-----cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHH
Q 042816 77 IECA-KSNGGFY-CWADMSGLI-----SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVM 149 (163)
Q Consensus 77 ~~~~-~~~~g~~-~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~ 149 (163)
+... .+.|+++ +++..+... ...+......+++.|++ +||.+.++ .| +.+|++... +++++++++
T Consensus 342 ~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~-~~-----~~~~l~~~~-t~~~i~~~~ 413 (423)
T TIGR00713 342 IPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLD-KGVFLPPS-QF-----EACFLSAAH-TEEDIENTI 413 (423)
T ss_pred CCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHH-CCeEEecC-Cc-----cceeeECCC-CHHHHHHHH
Confidence 5542 2344444 334432110 00000123467878886 89998754 22 347888774 899999999
Q ss_pred HHHHHHHHHh
Q 042816 150 ERIRRISQTC 159 (163)
Q Consensus 150 ~~l~~~~~~~ 159 (163)
++|.+++.++
T Consensus 414 ~~l~~~l~~~ 423 (423)
T TIGR00713 414 EAAEEVFAEL 423 (423)
T ss_pred HHHHHHHhhC
Confidence 9999988653
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-08 Score=78.49 Aligned_cols=140 Identities=19% Similarity=0.110 Sum_probs=91.4
Q ss_pred ceeEEEEEecCHHHHHHHHHhhcc---cCCChHHHHH-HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLARF---SSVSAPSQNL-LVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAK 81 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~~---~~~s~~~q~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 81 (163)
|.|+||+++ ++++++.+.....+ .++..+.+.+ +...++.- ...+..++.+.++++++.+.|+++|+++.
T Consensus 254 g~~~G~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~----~~~~~~~~~l~~~~~~l~~~L~~~g~~v~- 327 (407)
T PRK07179 254 AGRAGIITC-PRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVI----ESADDRRARLHANARFLREGLSELGYNIR- 327 (407)
T ss_pred hccCeEEEe-CHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHHHcCCCCC-
Confidence 348999999 88988888765542 2232333332 22333321 22345678899999999999998888776
Q ss_pred CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCC-CCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 82 SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPG-SSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg-~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
+. +.++++.++.. .+...+.+.|.+ +||.+..- .......++++||+++. +++++++++++.|.+++++.
T Consensus 328 ~~-~~i~~l~~~~~------~~~~~~~~~L~~-~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 328 SE-SQIIALETGSE------RNTEVLRDALEE-RNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDEV 399 (407)
T ss_pred CC-CCEEEEEeCCH------HHHHHHHHHHHH-CCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence 34 45667766532 145667777765 89984321 01011235799999974 58899999999999988764
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.2e-09 Score=79.79 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=95.1
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc---c
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE---C 79 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~---~ 79 (163)
..+|+||+++ ++++++.+..... .++.+++.|.++...|+.- ++ ....+.++++.+++.+.|++.+.. .
T Consensus 261 g~~~ig~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l---~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 334 (401)
T PRK00854 261 GFYPVSAVLS-NSEVLGVLKPGQHGSTFGGNPLACAVARAALKVL---TE--EGMIENAAEMGAYFLEGLRSIRSNIVRE 334 (401)
T ss_pred CccCeEEEEE-cHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHH---HH--cCHHHHHHHHHHHHHHHHHhhccCceEE
Confidence 3479999999 8999888764333 2467888898888888642 22 235677888888899988886422 2
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~~ 157 (163)
..+.|.++.+.-.+.. .+..++++.|.+ +||.+.+. +.+++|++.. .++++++++++++|.+++.
T Consensus 335 ~~g~g~~~~i~~~~~~------~~~~~~~~~L~~-~GV~v~~~------~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 335 VRGRGLMLAVELEPEA------GGARQYCEALKE-RGLLAKDT------HDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred EeccceEEEEEEecCc------hhHHHHHHHHHH-CCeEEecC------CCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 3455666555333321 156789999887 79999752 2479999974 3488999999999998763
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-08 Score=79.17 Aligned_cols=151 Identities=13% Similarity=0.131 Sum_probs=101.1
Q ss_pred CCCCcee------EEEEEecCHHHHHHHHHhhc----cc---CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFR------ISVIYSYNNSVLAAAKKLAR----FS---SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKF 68 (163)
Q Consensus 2 ~~~~G~R------iG~~i~~~~~~~~~~~~~~~----~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 68 (163)
+.|+|+| .||++++++++++.+++... +. +.+.....+++..|.+.. + .+...+.++ +++++
T Consensus 229 ~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~--~--~~~l~~~~~-~r~~l 303 (431)
T cd00617 229 CTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAV--E--EDYLRHRVE-QVRYL 303 (431)
T ss_pred EEEEeecCCCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcc--c--HHHHHHHHH-HHHHH
Confidence 3567887 66999944579998876432 11 223333344444664421 1 133444444 45999
Q ss_pred HHHhhhcCCccccCCceeEEEeecCCccc---CCChhhHHHHHHHHHHhcCeEEcC-CCC-CC--CC-------CCceEE
Q 042816 69 VAGLRQLGIECAKSNGGFYCWADMSGLIS---SYSEKGELELWDKLLNVAKVNVTP-GSS-CH--CI-------EPGWFS 134 (163)
Q Consensus 69 ~~~l~~~g~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~gi~v~p-g~~-f~--~~-------~~~~iR 134 (163)
.+.|++.|+.+..|.||+++|++++...+ ...+ ++..|+.+|+++.||.+.. |+. ++ .. ..+.+|
T Consensus 304 ~~~L~~~G~~v~~P~Ggh~v~~d~~~~~~~~~~~~~-~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~r 382 (431)
T cd00617 304 GDRLDEAGVPIVEPAGGHAVFIDAREFLPHIPQEQF-PAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVR 382 (431)
T ss_pred HHHHHHCCCCccCCCcceEEEEEhHHhcCCCCcccC-cHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeE
Confidence 99999999999999999999999886431 1122 6899999999989999764 542 11 11 147899
Q ss_pred EEEec--CChhHHHHHHHHHHHHHHH
Q 042816 135 FSFTL--LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 135 i~~~~--~~~~~l~~~~~~l~~~~~~ 158 (163)
+++.. -+.+.++...+.|.++.++
T Consensus 383 l~~prr~~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 383 LAIPRRVYTQDHMDYVAAAVIALYER 408 (431)
T ss_pred EeccccccCHHHHHHHHHHHHHHHhh
Confidence 99964 2667888888888877765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.3e-08 Score=77.08 Aligned_cols=147 Identities=10% Similarity=0.047 Sum_probs=93.9
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhccc--CCC-hHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARFS--SVS-APSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~~--~~s-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
++|.|.||++++++++++.+.+..... +.+ ...+.++...+..- +.+.++...+.++++++++.+.|++.|+++.
T Consensus 230 l~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 307 (416)
T PRK00011 230 LRGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEA--LEPEFKEYAQQVVKNAKALAEALAERGFRVV 307 (416)
T ss_pred CCCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhCCCeee
Confidence 689999999994478998887766532 222 22222222222211 1344677888899999999999998888765
Q ss_pred c-CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCC-CCC---CCCCceEEEEEe-----cCChhHHHHHHH
Q 042816 81 K-SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGS-SCH---CIEPGWFSFSFT-----LLTEKDIHVVME 150 (163)
Q Consensus 81 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~-~f~---~~~~~~iRi~~~-----~~~~~~l~~~~~ 150 (163)
+ +..++++|+.++... .+..++.+.|. ++||.+.++. .+. ...+..+|++.. .++.++++..++
T Consensus 308 ~~~~~~~~~~i~~~~~~-----~~~~~~~~~L~-~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~ 381 (416)
T PRK00011 308 SGGTDNHLVLVDLRSKG-----LTGKEAEAALE-EANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAE 381 (416)
T ss_pred ecCCCCeEEEEeCcccC-----CCHHHHHHHHH-HcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHH
Confidence 3 123488899986320 14566777665 4899998542 221 112567998642 135788888888
Q ss_pred HHHHHHHH
Q 042816 151 RIRRISQT 158 (163)
Q Consensus 151 ~l~~~~~~ 158 (163)
.|.+++..
T Consensus 382 ~l~~~~~~ 389 (416)
T PRK00011 382 LIADVLDN 389 (416)
T ss_pred HHHHHHhc
Confidence 88877654
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.7e-09 Score=82.57 Aligned_cols=140 Identities=13% Similarity=0.078 Sum_probs=93.1
Q ss_pred CCCCceeEEEEEecCHHHHHHH----------------------------HHhhccc--CCChHHH-HHHHHhcC-ChHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAA----------------------------KKLARFS--SVSAPSQ-NLLVSMLS-DTKF 49 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~----------------------------~~~~~~~--~~s~~~q-~~~~~~l~-~~~~ 49 (163)
|++.|.|+||+.+ ++++++.+ +...... +.+...| .++...+. .+
T Consensus 270 ~~~~Gpg~G~l~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~-- 346 (447)
T PRK00451 270 LSFGGPYLGFFAT-RKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLG-- 346 (447)
T ss_pred CCCCCCCchHHHh-hHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHC--
Confidence 4678999999999 88887763 1111111 2222334 23332222 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc-CCccccCCceeEEE--eecCCcccCCChhhHHHHHHHHHHhcCeE-EcCCCCC
Q 042816 50 VQKFININRERLRRLYVKFVAGLRQL-GIECAKSNGGFYCW--ADMSGLISSYSEKGELELWDKLLNVAKVN-VTPGSSC 125 (163)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~gi~-v~pg~~f 125 (163)
+..+++..+.+.++++++.+.|+++ |+++. .+++|.+ ++++. +..+++++|++ +||. ..++..|
T Consensus 347 -~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~~~v~~~~--------~~~~~~~~L~~-~gi~~~~~~~~~ 414 (447)
T PRK00451 347 -PEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGPFFNEFVVRLPK--------PAEEVNEALLE-KGILGGYDLGRY 414 (447)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCCeEEEEEEecCC--------CHHHHHHHHHh-cCCCCCcccccc
Confidence 3457888999999999999999998 67775 4455544 55542 56889999987 6666 3566666
Q ss_pred CCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 126 HCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 126 ~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
....++++|+++.. .++++++..++.|.+++
T Consensus 415 ~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 415 YPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred cCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 53335799999963 37888888888887654
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-08 Score=77.35 Aligned_cols=145 Identities=19% Similarity=0.204 Sum_probs=95.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhh---------------------cc--cCCChHHHHHHHHhcCChHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLA---------------------RF--SSVSAPSQNLLVSMLSDTKFVQKFININR 58 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~---------------------~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 58 (163)
||.+| +||+++ ++++++.+.... .+ .+++.+...++..+++--. +.-+++..
T Consensus 221 ~gp~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~--~~g~~~i~ 295 (398)
T TIGR03392 221 YGPTG--IGVLYG-KTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLT--DIDIAAAE 295 (398)
T ss_pred cCCCc--eEEEEE-cHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHH--HhCHHHHH
Confidence 56565 899999 888877663211 01 1334434444444443210 11234566
Q ss_pred HHHHHHHHHHHHHhhhc-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC------CCCc
Q 042816 59 ERLRRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------IEPG 131 (163)
Q Consensus 59 ~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------~~~~ 131 (163)
++..+.++++.+.|+++ |++...+..+..+++.++.. +..++.+.|.+ +||.|.+|..+.. ..++
T Consensus 296 ~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~-------~~~~l~~~L~~-~gI~v~~g~~~~~~~~~~~g~~~ 367 (398)
T TIGR03392 296 AWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGV-------HHSDLAALLAE-SGIALRAGQHCAQPLMAALGVSG 367 (398)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCc-------CHHHHHHHHHh-CCEEEecCccchHHHHHHhCCCC
Confidence 77777888888888887 77766544555666666642 56788887765 8999999986531 1257
Q ss_pred eEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 132 WFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 132 ~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
++|+|+.. .+.++++..++.|.++++.+
T Consensus 368 ~iRvS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 368 TLRASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred EEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 99999953 38889999999999887764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.7e-09 Score=79.37 Aligned_cols=146 Identities=15% Similarity=0.203 Sum_probs=98.1
Q ss_pred CCCCceeEEEEEecCHHH-HHHHHH----hh--cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 2 LSLPGFRISVIYSYNNSV-LAAAKK----LA--RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~-~~~~~~----~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
||.+| +|++++ ++++ ...+.. .. .+++++.+.+.++..+++.. .+++++.++++.+.++++.+.|++
T Consensus 202 ~gp~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~l~~~L~~ 275 (381)
T PRK02948 202 YGPKG--VGAVYI-NPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENI---LKNMQEESLRFKELRSYFLEQIQT 275 (381)
T ss_pred CCCCc--EEEEEE-cCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67778 799988 5553 111110 00 13578888888888888753 356788899999999999999999
Q ss_pred cCCccccCCceeEEEe-----ecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCC----CCCC-------------CCce
Q 042816 75 LGIECAKSNGGFYCWA-----DMSGLISSYSEKGELELWDKLLNVAKVNVTPGSS----CHCI-------------EPGW 132 (163)
Q Consensus 75 ~g~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~----f~~~-------------~~~~ 132 (163)
.|+++..+...-+.+. .++. .+..++...|. ++||.|.+|.. |..+ ..++
T Consensus 276 ~~~~v~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~l~-~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~ 347 (381)
T PRK02948 276 LPLPIEVEGHSTSCLPHIIGVTIKG-------IEGQYTMLECN-RRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQF 347 (381)
T ss_pred CCCCEEEeCCCccCcCCEEEEEeCC-------CCHHHHHHhcc-cCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCce
Confidence 8876654321111111 1221 14566777765 58999999874 2110 1479
Q ss_pred EEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 133 FSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 133 iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
+|||+.. .++++++..++.|.++++.+.+
T Consensus 348 lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 377 (381)
T PRK02948 348 VRFSFGQQTTKDQIDTTIHALETIGNQFYR 377 (381)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999974 3789999999999998876543
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.6e-08 Score=75.87 Aligned_cols=149 Identities=7% Similarity=-0.034 Sum_probs=90.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChH--HHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTK--FVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
+| +|+++|++++ ++++.+.+..... .++.+++.+.++...|+.-+ .+.++++++.+.++++.+.+. ..+.+
T Consensus 278 lg-~G~pigav~~-~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~---~~~~~ 352 (433)
T PRK08117 278 IA-SGLPLSAVVA-SKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERLEVLK---EKHPV 352 (433)
T ss_pred cc-CCCcceeEEE-cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH---hcCCc
Confidence 45 7899999999 8999888754332 24568888887777775321 112333333333333332221 12233
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~ 156 (163)
....+..|+++++++...-+.+.......+.+.+++ +||.+.|. + ...+.+|++.+ .++++++++++++|.+++
T Consensus 353 ~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~---g-~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l 427 (433)
T PRK08117 353 IGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLE-KGLLFYLC---G-NAGNVLRMIPPLTVTKEEIDEGLDILDEAL 427 (433)
T ss_pred eeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHH-CCCEEeec---C-CCCCEEEEeCCccCCHHHHHHHHHHHHHHH
Confidence 233445567777777432111111234567777766 89998763 1 12579999963 359999999999999998
Q ss_pred HHhh
Q 042816 157 QTCK 160 (163)
Q Consensus 157 ~~~~ 160 (163)
.++.
T Consensus 428 ~~~~ 431 (433)
T PRK08117 428 TEYE 431 (433)
T ss_pred HHHh
Confidence 7764
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.1e-08 Score=76.87 Aligned_cols=136 Identities=15% Similarity=0.157 Sum_probs=92.3
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----C
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG-----I 77 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-----~ 77 (163)
.|+++||+++ ++++++.+..... .++.+++.+.++...|+.- ++ +...+.++++.+++.+.|++.+ +
T Consensus 252 gG~pigav~~-~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~---~~--~~l~~~~~~~~~~l~~~L~~l~~~~~~~ 325 (397)
T TIGR03246 252 GGFPIGAMLT-TTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLV---NT--PELLAGVKQRHDLFVDGLEKINARYNVF 325 (397)
T ss_pred CCcceeEEEE-cHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHH---hh--ccHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 6999999999 8999888864422 2456778888777777532 11 3456777778888888887753 1
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
...++.| .++-+.+.... ......+++.|++ +||.+.+. + ++++|++.+. ++++++++++++|.+++
T Consensus 326 ~~vrg~G-~~~~i~~~~~~----~~~~~~~~~~l~~-~Gv~~~~~---g---~~~lR~~p~~~~t~~~i~~~~~~l~~~l 393 (397)
T TIGR03246 326 SEIRGKG-LLIGAVLTEAY----QGKAKQFVNAAAE-EGVIALIA---G---PNVVRFAPSLVISDDDIDEGLARFERAI 393 (397)
T ss_pred EeeecCc-eEEEEEEcCch----hhHHHHHHHHHHH-CCeEEeec---C---CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 2223344 33444443210 0146788888887 89998762 2 4789996543 48999999999999988
Q ss_pred HH
Q 042816 157 QT 158 (163)
Q Consensus 157 ~~ 158 (163)
.+
T Consensus 394 ~~ 395 (397)
T TIGR03246 394 EQ 395 (397)
T ss_pred HH
Confidence 65
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-07 Score=73.68 Aligned_cols=147 Identities=13% Similarity=0.065 Sum_probs=105.2
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--------------------ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--------------------FSSVSAPSQNLLVSMLSDTKFVQKFININRERL 61 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--------------------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 61 (163)
|+.|. ++||+++ ++++++.+..... ..+++...+.++.++++.-. +.-+++.++++
T Consensus 203 l~~P~-G~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~--~~G~e~i~~~~ 278 (401)
T PLN02409 203 LSLPT-GLGIVCA-SPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIF--EEGLENVIARH 278 (401)
T ss_pred cCcCC-CcceeEE-CHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHH--HhhHHHHHHHH
Confidence 34433 7999999 8888887754221 12445555666666665321 33467888999
Q ss_pred HHHHHHHHHHhhhcCCccccCC----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE
Q 042816 62 RRLYVKFVAGLRQLGIECAKSN----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF 137 (163)
Q Consensus 62 ~~~~~~l~~~l~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~ 137 (163)
++..+++.+.|++.|+++..++ .+...|+.+|+.+ +..++.+.|++++||.+.+|..- .....+||+.
T Consensus 279 ~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~~------~~~~l~~~l~~~~~i~i~~G~~~--~~~~~~Rig~ 350 (401)
T PLN02409 279 ARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEGI------DSAEIVKNAWKKYNLSLGLGLNK--VAGKVFRIGH 350 (401)
T ss_pred HHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCCC------CHHHHHHHHHHhCCEEEEcCCCc--ccCCEEEEcC
Confidence 9999999999988887766542 2234567777654 67788888888789999998742 2367899998
Q ss_pred ec-CChhHHHHHHHHHHHHHHHhh
Q 042816 138 TL-LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 138 ~~-~~~~~l~~~~~~l~~~~~~~~ 160 (163)
.. .+.+++...+..|.+++.++.
T Consensus 351 ~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 351 LGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcC
Confidence 54 588899999999999887754
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-07 Score=71.59 Aligned_cols=138 Identities=14% Similarity=0.074 Sum_probs=92.4
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhccc----------CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFS----------SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~----------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
|+++|.++|++++.++++++.+.....+. +.+.....++...++.-. +.-+++..+...++.+++.+.
T Consensus 221 ~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~--~~g~~~~~~~~~~~~~~l~~~ 298 (371)
T PRK13520 221 MGLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLG--REGYRKVVERCMENTRWLAEE 298 (371)
T ss_pred ccCccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhc--HhHHHHHHHHHHHHHHHHHHH
Confidence 57788999988875777777764222111 123334444444444211 122466778888889999999
Q ss_pred hhhcCCc-cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHH
Q 042816 72 LRQLGIE-CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVM 149 (163)
Q Consensus 72 l~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~ 149 (163)
|++.|++ +..|..+ ++.++++ +..++.+.|.+ +||.|.++. .++.+|+|+.. .++++++.++
T Consensus 299 L~~~g~~~~~~~~~~-~v~~~~~---------~~~~v~~~L~~-~gi~v~~~~-----~~~~iRis~~~~~t~edi~~~~ 362 (371)
T PRK13520 299 LKERGFEPVIEPVLN-IVAFDDP---------NPDEVREKLRE-RGWRVSVTR-----CPEALRIVCMPHVTREHIENFL 362 (371)
T ss_pred HHhCCCEEecCCCce-EEEEecC---------CHHHHHHHHHH-CCceeccCC-----CCCEEEEEEECCCCHHHHHHHH
Confidence 9888887 5556655 4455665 35788888876 799998753 25689999863 3788999999
Q ss_pred HHHHHHHH
Q 042816 150 ERIRRISQ 157 (163)
Q Consensus 150 ~~l~~~~~ 157 (163)
+.|.+++.
T Consensus 363 ~~l~~~~~ 370 (371)
T PRK13520 363 EDLKEVKK 370 (371)
T ss_pred HHHHHHhh
Confidence 99987654
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-07 Score=75.22 Aligned_cols=145 Identities=10% Similarity=0.082 Sum_probs=89.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChH--HHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTK--FVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
+|.+++++|++++ ++++++.+...... ++.+++.+.++...|+.-. .+.++..++.+.++++.+.+.+.+... +
T Consensus 295 lggG~~pigav~~-~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~-i 372 (474)
T PLN02624 295 LGGGVIPVSAVLA-DKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKL-I 372 (474)
T ss_pred ccCCCCcceeeee-cHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCc-e
Confidence 5777799999999 88888777543332 3578888887777765311 012333444444444444333322211 3
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~ 156 (163)
....+.|.++. +.++... .+...+.++++.|.+ +||.+.|+. ++++||+.. .++++++++++++|.+++
T Consensus 373 ~~vrg~G~~~~-i~l~~~~--~~~~~a~~~~~~L~e-~GV~v~p~~------~~~lR~~p~l~~t~e~id~~l~~L~~~l 442 (474)
T PLN02624 373 KEVRGRGLLNA-VVLNSPK--LGPVSAYDVCLKLKE-RGLLAKPTH------DTIIRLAPPLSISEDELQECSKALSDVL 442 (474)
T ss_pred EEEEeeEEEEE-EEecCCC--cChHHHHHHHHHHHh-CCeEEecCC------CCEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 33445666554 3343210 001246788888766 899998852 578999863 358999999999999887
Q ss_pred HH
Q 042816 157 QT 158 (163)
Q Consensus 157 ~~ 158 (163)
..
T Consensus 443 ~~ 444 (474)
T PLN02624 443 EH 444 (474)
T ss_pred HH
Confidence 64
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-07 Score=74.18 Aligned_cols=137 Identities=9% Similarity=0.051 Sum_probs=93.2
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc--ccCCChHHH---HHHHH-hcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQ---NLLVS-MLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q---~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
|+++|++++ ++++ +.+..... .++.+++.. .++.. +++++.+ .++++++.+.++++.+.+.+.+... ..
T Consensus 269 G~pigav~~-~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l-~~~~~~~g~~l~~~l~~l~~~~~~~--~~ 343 (412)
T TIGR02407 269 GLPLALTLI-KPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAF-EKAVQRKSEIIQERLDRIVAEYPEL--IK 343 (412)
T ss_pred ccceeEEEE-chhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHHHHHhhCCCc--eE
Confidence 899999999 7775 54432211 234555532 23333 4666554 6777888888887777666655322 24
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
.....|+++|++++... ....+.+.+.+ +||.+.+...+ .+.+|++... +++++++++++.|.+++++
T Consensus 344 ~vrg~Gl~~~l~l~~~~------~~~~~~~~~~~-~Gv~v~~~~~~----~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 344 QVRGRGLMQGIECGDGD------LAGKIAKAAFE-NGLIIETSGPN----DEVIKLLPPLTIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred eeecceeEEEEEecChH------HHHHHHHHHHH-CCCEEeccCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence 45567899999997531 45678888876 89999874221 4679998865 5889999999999998753
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-07 Score=73.31 Aligned_cols=141 Identities=10% Similarity=0.029 Sum_probs=84.1
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhccc----CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFS----SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
||++| ||+++.++++++.+......+ ++++++..++...++-.. ++++.+.++.++++...+.+.+...
T Consensus 253 ~~~~G---g~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~-- 325 (402)
T PRK07505 253 FGASG---GVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHL--SEELDQLQQKLQNNIALFDSLIPTE-- 325 (402)
T ss_pred hhccC---eEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHhc--
Confidence 55665 888754788999988765532 344556666655554100 2233444555555555443332211
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
....+.+..++.++.. .++.++.+.|++ +||.+.|+..+..+ +++++||++.. +++++++++++.|.++
T Consensus 326 --~~g~~~~i~~~~~~~~------~~~~~~~~~l~~-~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~ 396 (402)
T PRK07505 326 --QSGSFLPIRLIYIGDE------DTAIKAAKQLLD-RGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEI 396 (402)
T ss_pred --CCCCCCCEEEEEeCCH------HHHHHHHHHHHH-CCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHH
Confidence 1122222223333321 146788888886 89999998433322 24799999973 4889999999999988
Q ss_pred HHH
Q 042816 156 SQT 158 (163)
Q Consensus 156 ~~~ 158 (163)
+.+
T Consensus 397 l~~ 399 (402)
T PRK07505 397 LDE 399 (402)
T ss_pred HHh
Confidence 754
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-07 Score=72.93 Aligned_cols=143 Identities=17% Similarity=0.260 Sum_probs=93.0
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc---------------------c--cCCChHHHHHHHHhcCChHHHHH-HHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR---------------------F--SSVSAPSQNLLVSMLSDTKFVQK-FININ 57 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~---------------------~--~~~s~~~q~~~~~~l~~~~~~~~-~~~~~ 57 (163)
+|.+| +||+++ ++++++.+..... + .+++.....++..+++.- .+ -.++.
T Consensus 223 ~gp~G--~g~l~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~---~~~g~~~~ 296 (403)
T TIGR01979 223 YGPTG--IGVLYG-KEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYL---EAIGLENI 296 (403)
T ss_pred cCCCC--ceEEEE-chHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHH---HHhCHHHH
Confidence 56566 999999 7887776531100 1 123444455555555321 12 14567
Q ss_pred HHHHHHHHHHHHHHhhhc-CCccccCC-----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC----
Q 042816 58 RERLRRLYVKFVAGLRQL-GIECAKSN-----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC---- 127 (163)
Q Consensus 58 ~~~~~~~~~~l~~~l~~~-g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~---- 127 (163)
+++..+.++.+.+.|+.+ |+++..|. +++..+ .++.. +..++.+.|. ++||.+.+|..+..
T Consensus 297 ~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~-~~~~~-------~~~~~~~~L~-~~gI~v~~g~~~~~~~~~ 367 (403)
T TIGR01979 297 EAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISF-NVEGV-------HPHDVGTILD-EEGIAVRSGHHCAQPLMR 367 (403)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEE-EeCCc-------CHHHHHHHHh-hCCEEEcchhhhhHHHHH
Confidence 788888888999999887 78877553 555444 56531 4567777665 58999998763311
Q ss_pred --CCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 128 --IEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 128 --~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
..++++|||+.. .+.++++..++.|+++++.+
T Consensus 368 ~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 368 RFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred HhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 125799999973 37789999999998877654
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-07 Score=72.85 Aligned_cols=137 Identities=17% Similarity=0.157 Sum_probs=93.2
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE- 78 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~- 78 (163)
++..++|+||+++ ++++++.+..... .++.+++.|.++...|+.- ++ +...+..++..+++.+.|++++..
T Consensus 257 l~~g~~~ig~v~~-~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i---~~--~~l~~~~~~~~~~~~~~L~~l~~~~ 330 (401)
T TIGR01885 257 LSGGVYPVSAVLA-DDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVL---EE--EKLAENAEKLGEIFRDQLKKLPKPI 330 (401)
T ss_pred ccCCCCCcEEEEE-cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHhccCCc
Confidence 4556699999999 8999888765222 2456788888887777542 21 123455666678888888877422
Q ss_pred --cccCCceeEE-EeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHH
Q 042816 79 --CAKSNGGFYC-WADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 --~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~ 154 (163)
..++.|.++. +++.+.. + .+..++++.|.+ +||.+.|+. ++.+||+.. .++++++++++++|.+
T Consensus 331 ~~~~~g~g~~~~i~~~~~~~----~-~~~~~l~~~l~~-~Gv~v~~~~------~~~lRi~p~l~~t~~~i~~~l~~l~~ 398 (401)
T TIGR01885 331 ITEVRGRGLLNAIVIDESKT----G-RTAWDLCLKLKE-KGLLAKPTH------GNIIRLAPPLVITEEQLDEGLEIIKK 398 (401)
T ss_pred eeEEeecCeeEEEEeccCcc----h-hHHHHHHHHHHh-CCEEEEecC------CCEEEEeCCccCCHHHHHHHHHHHHH
Confidence 2345666654 3332210 0 156788998876 899998742 578999974 3588999999999988
Q ss_pred HH
Q 042816 155 IS 156 (163)
Q Consensus 155 ~~ 156 (163)
++
T Consensus 399 ~l 400 (401)
T TIGR01885 399 VI 400 (401)
T ss_pred Hh
Confidence 75
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.6e-07 Score=68.53 Aligned_cols=132 Identities=14% Similarity=0.072 Sum_probs=88.1
Q ss_pred CCCCceeEEE-EEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 2 LSLPGFRISV-IYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 2 ~~~~G~RiG~-~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
||+|| |+ +++ ++++++.+...... ++.+.+.|.++...|++..+ .+..+.+.++++++.+.|+++|
T Consensus 198 ~~~~~---g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~-----~~~~~~~~~~~~~l~~~L~~~~ 268 (338)
T cd06502 198 GGAPV---GAVVVG-NRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLW-----LRRLRHDHEMARRLAEALEELG 268 (338)
T ss_pred CCCcc---ceEEEC-CHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchH-----HHHHHHHHHHHHHHHHHHHhcC
Confidence 67776 54 456 88999988776542 34677788888888876532 2344566677889999999988
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHH--hcCeEEcCCCCCCCCCCceEEEEEecC-ChhHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLN--VAKVNVTPGSSCHCIEPGWFSFSFTLL-TEKDIHVVMERIR 153 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~gi~v~pg~~f~~~~~~~iRi~~~~~-~~~~l~~~~~~l~ 153 (163)
+.+.++.+++.+. .++... .....+.+.+.+ ++|+.+.+.. .+++|++.... ++++++++++.+.
T Consensus 269 ~~~~~~~~~~~~v-~~~~~~-----~~~~~l~~~l~~~~~~gi~~~~~~------~~~lRi~~~~~~~~~~i~~~~~~l~ 336 (338)
T cd06502 269 GLESEVQTNIVLL-DPVEAN-----AVFVELSKEAIERRGEGVLFYAWG------EGGVRFVTHWDTTEEDVDELLSALK 336 (338)
T ss_pred CCcccccCCeEEE-ecCCcc-----HHHHHHHHHHHHhhhCCEEEEecC------CCeEEEEeecCCCHHHHHHHHHHHh
Confidence 7777777776543 444210 122344444431 3799987742 27899999753 7788998888876
Q ss_pred H
Q 042816 154 R 154 (163)
Q Consensus 154 ~ 154 (163)
+
T Consensus 337 ~ 337 (338)
T cd06502 337 A 337 (338)
T ss_pred c
Confidence 4
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.8e-07 Score=71.47 Aligned_cols=146 Identities=8% Similarity=0.068 Sum_probs=96.0
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHH---HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLL---VSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
+|+++|++++ ++++.+.+..... .++.+++.+.++ ..+++++.+ .++.+++.+.++++.+.+.+.+... .++
T Consensus 271 ~G~pigav~~-~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l-~~~~~~~g~~l~~~L~~l~~~~~~i-~~v 347 (425)
T PRK07495 271 GGFPLAAVTG-RAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDL-CERANQLGNRLKQRLASLRETVPEI-ADI 347 (425)
T ss_pred CCccceEEEE-cHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHhhCCCe-eee
Confidence 6899999999 8999887754332 256788888844 444555443 5667777777777766655543211 233
Q ss_pred ccCCceeEEEeecCCcc-cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLI-SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
... |+++|+++...- ..+...-...+.+.+++ +|+.+.+... ..+.+||.-.. ++++++++++++|.+++.
T Consensus 348 rG~--Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~g~----~~~~~r~~Ppl~it~~~id~~~~~l~~~l~ 420 (425)
T PRK07495 348 RGP--GFMNAVEFNDADSGLPSAEFANRVRLKALE-KGLILLTCGV----HGNVIRFLAPITIQDDVFAEALDILEASIL 420 (425)
T ss_pred ecC--ceEEEEEEecCCCCCccHHHHHHHHHHHHH-CCeEEeecCC----CCCEEEEeCCCccCHHHHHHHHHHHHHHHH
Confidence 333 899999985321 01111123467777766 8999875311 13679998643 588999999999999998
Q ss_pred Hhh
Q 042816 158 TCK 160 (163)
Q Consensus 158 ~~~ 160 (163)
+++
T Consensus 421 ~~~ 423 (425)
T PRK07495 421 EAS 423 (425)
T ss_pred HHh
Confidence 765
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.1e-07 Score=71.09 Aligned_cols=149 Identities=9% Similarity=0.046 Sum_probs=87.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG-IE 78 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~ 78 (163)
+| +|+|+||+++ ++++++.+..... .++.+++.|.++...|+.-.- ++..++.++.-...++.+.+...++. +.
T Consensus 275 l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~v~ 351 (443)
T PRK08360 275 LG-GGLPISATIG-RAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEE-KNLLKRAEKLGNYTKKRLEEMKKKHELIG 351 (443)
T ss_pred cc-CCceeEEEEE-cHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 56 8999999999 8999988865433 246778888877777754210 12222222222222222322222232 22
Q ss_pred cccCCceeEEEeecCCc--ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGL--ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
...+. |.++-+++... ...++......+.+.+++ +||.+.+.. .+.+|++.+. +++++++++++++.++
T Consensus 352 ~vrg~-Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~------~~~lr~~P~l~~t~~~id~~~~~l~~~ 423 (443)
T PRK08360 352 DVRGI-GLMIGVDLVKDRETKERAYEEAAKVVWRAWE-LGLIVTFFS------GNVLRIQPPLTIEKEVLDEGLDILEEA 423 (443)
T ss_pred eeecc-ceEEEEEEecCCcccCccHHHHHHHHHHHHH-CCeEEeecC------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 22333 44455555321 001111234678888876 899986531 3679996543 4889999999999999
Q ss_pred HHHhhh
Q 042816 156 SQTCKS 161 (163)
Q Consensus 156 ~~~~~~ 161 (163)
+.++++
T Consensus 424 l~~~~~ 429 (443)
T PRK08360 424 IEDVEE 429 (443)
T ss_pred HHHHHh
Confidence 987653
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-07 Score=69.71 Aligned_cols=135 Identities=14% Similarity=0.070 Sum_probs=88.4
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhccc----------CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFS----------SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~----------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
|++++.++|+++..++++++.+.....+. +.+.....++...++.-. +..+++..+.+.++++++.+.
T Consensus 226 ~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~--~~g~~~~~~~~~~~~~~l~~~ 303 (373)
T TIGR03812 226 MGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLG--REGYRKIVAECMENTRYLVEE 303 (373)
T ss_pred cCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHH
Confidence 57788899876643788887764222221 122333444444444311 344577788899999999999
Q ss_pred hhhcCCc-cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHH
Q 042816 72 LRQLGIE-CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVM 149 (163)
Q Consensus 72 l~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~ 149 (163)
|+++|++ +..|..+ ++.+.++. ..++.+.|.+ +||.+.++. .++++|+++.. .++++++..+
T Consensus 304 L~~~g~~~~~~~~~~-~v~~~~~~---------~~~v~~~L~~-~gi~v~~~~-----~~~~iRis~~~~~t~edid~l~ 367 (373)
T TIGR03812 304 LKKIGFEPVIEPVLN-IVAFEVDD---------PEEVRKKLRD-RGWYVSVTR-----CPKALRIVVMPHVTREHIEEFL 367 (373)
T ss_pred HHhCCCeEEcCCCce-EEEEEeCC---------HHHHHHHHHH-CCceeccCC-----CCCEEEEEEECCCCHHHHHHHH
Confidence 9988754 4444444 44456552 3578888876 799998752 25799999974 2778888888
Q ss_pred HHHHH
Q 042816 150 ERIRR 154 (163)
Q Consensus 150 ~~l~~ 154 (163)
+.|.+
T Consensus 368 ~~L~~ 372 (373)
T TIGR03812 368 EDLKE 372 (373)
T ss_pred HHHhh
Confidence 88764
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.6e-07 Score=71.35 Aligned_cols=144 Identities=10% Similarity=0.046 Sum_probs=90.2
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----C-C
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----G-I 77 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g-~ 77 (163)
.|+++|++++ ++++.+.+..... .++.+++++.++.+.|+.- .+ +...+..+++-+++.+.|+++ + +
T Consensus 292 ~G~Pi~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~---~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i 365 (443)
T PRK06058 292 GGLPLSAVTG-RAEIMDAPHPGGLGGTYGGNPVACAAALAAIETI---EE--DDLVARARQIEALMTDRLRALAAEDDRI 365 (443)
T ss_pred CCCccEEEEE-cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHH---HH--cCHHHHHHHHHHHHHHHHHHHHhhCCcE
Confidence 6899999999 8999888764432 2568889988888887532 11 123344444455555555443 2 2
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
.-.++.|.++.+.-.+.....++..-...+.+.+++ +||.+.|+..|+ +.+|+..+. ++++++++++++|.+++
T Consensus 366 ~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~-~Gv~~~~~~~~~----~~lr~~Ppl~~t~~~i~~~~~~l~~~l 440 (443)
T PRK06058 366 GDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHA-AGVIVLTCGTYG----NVIRLLPPLVIGDELLREGLDVLEAAL 440 (443)
T ss_pred EeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHH-CCeEEeccCCCC----CEEEEECCCccCHHHHHHHHHHHHHHH
Confidence 224567766544222211101111124556666666 899999875543 589997442 49999999999999998
Q ss_pred HHh
Q 042816 157 QTC 159 (163)
Q Consensus 157 ~~~ 159 (163)
.++
T Consensus 441 ~~~ 443 (443)
T PRK06058 441 ADL 443 (443)
T ss_pred HhC
Confidence 754
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.6e-07 Score=68.19 Aligned_cols=138 Identities=10% Similarity=0.138 Sum_probs=91.8
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc-c-
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE-C- 79 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~- 79 (163)
++++.||++++++++.+.+...+.. ..++++.|.++...++.- ....+.++++++.+.+.|+++ ++. +
T Consensus 203 ~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~tl-------~~r~~~~~~~a~~l~~~L~~~p~v~~v~ 275 (366)
T PRK08247 203 NDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTL-------ALRMRQHEENAKAIAAFLNEQPGVTDVL 275 (366)
T ss_pred CceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCcH-------HHHHHHHHHHHHHHHHHHHhCCCeeEEe
Confidence 5679999999337888888766653 456777888777776642 233335688999999999998 765 4
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHH---------HHHHhcCeEEcCCCCCCC-----------CCCceEEEEEec
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWD---------KLLNVAKVNVTPGSSCHC-----------IEPGWFSFSFTL 139 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~gi~v~pg~~f~~-----------~~~~~iRi~~~~ 139 (163)
.++.||+|.| ++... .....|.+ .|...+.+.+.|++.+.. ..++-+|+|++-
T Consensus 276 ~P~~gg~~sf-~~~~~------~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl 348 (366)
T PRK08247 276 YPGRGGMLSF-RLQDE------EWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGI 348 (366)
T ss_pred cCCcCcEEEE-EECCH------HHHHHHHHcCCcceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEecc
Confidence 4448999988 56421 11222332 222334567778865532 125789999997
Q ss_pred CChhHHHHHHHHHHHHHHHh
Q 042816 140 LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 140 ~~~~~l~~~~~~l~~~~~~~ 159 (163)
|+.+..++-|.+++.+.
T Consensus 349 ---E~~~dl~~dl~~al~~~ 365 (366)
T PRK08247 349 ---ENVEDLIADLKQAFKQV 365 (366)
T ss_pred ---CCHHHHHHHHHHHHhhc
Confidence 66777777777777653
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.7e-07 Score=70.68 Aligned_cols=136 Identities=11% Similarity=0.022 Sum_probs=85.5
Q ss_pred CCceeEEEEEecCHHHHHHHHHh------------------------------hcc-c-CCChHHHHHHHHhcCChHHHH
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKL------------------------------ARF-S-SVSAPSQNLLVSMLSDTKFVQ 51 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~------------------------------~~~-~-~~s~~~q~~~~~~l~~~~~~~ 51 (163)
..|.|+||+.. ++++++.+... ..+ . +.....|.+...+.... +
T Consensus 228 ~Ggp~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~---~ 303 (398)
T cd00613 228 GGGPGAGFFAV-KKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLG---P 303 (398)
T ss_pred CCCCceeEEEE-hhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhC---H
Confidence 34899999999 77877764110 001 1 12233344444333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCccccCCceeE--EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCC
Q 042816 52 KFININRERLRRLYVKFVAGLRQLGIECAKSNGGFY--CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE 129 (163)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~ 129 (163)
..+++.++.++++.+++.+.|++++... .+.+.++ ++++++... + .++.++++.|.+ +||.+.+.. ...
T Consensus 304 ~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~v~~~~~~~~---~-~~~~~~~~~L~~-~gi~~~~~~---~~~ 374 (398)
T cd00613 304 EGLKEIAERAHLNANYLAKRLKEVGGVL-PFNGPFFHEFVLRLPPLY---G-IRAEDLAKALID-GGFHAPTMY---LPV 374 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCeeEEEEEEcCCcc---h-HHHHHHHHhhhh-cCccccccc---cCC
Confidence 4567888999999999999999885433 3344444 566776410 0 267889998876 898864422 123
Q ss_pred CceEEEEEec-CChhHHHHHHHHH
Q 042816 130 PGWFSFSFTL-LTEKDIHVVMERI 152 (163)
Q Consensus 130 ~~~iRi~~~~-~~~~~l~~~~~~l 152 (163)
++.+|++... .++++++.+++.|
T Consensus 375 ~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 375 DGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHhC
Confidence 5789999864 4778888887653
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-06 Score=68.42 Aligned_cols=138 Identities=16% Similarity=0.134 Sum_probs=87.9
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----C-C
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----G-I 77 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g-~ 77 (163)
+|+|+||+++ ++++.+.+..... .++.+++.+.++.+.|+.- ++ +...+..+++-+++.+.|++. + +
T Consensus 260 ~G~piga~~~-~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~---~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~i 333 (408)
T PRK04612 260 GGFPIGAMLA-GPKVAETMQFGAHGTTFGGNPLAAAVARVALRKL---AS--PQIAANVARQSAALRAGLEALNAEFGVF 333 (408)
T ss_pred CCCceEEEEE-CHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 7899999999 8888887765433 2567888888888777542 11 123334444444444444432 2 2
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
......| .++-+++.... ......+.+.+.+ +||.+.|. +++.+|+.... ++++++++++++|.+++
T Consensus 334 ~~vrg~G-l~~~i~~~~~~----~~~a~~i~~~l~~-~Gvlv~~~------g~~~lRl~Ppl~it~eeid~~l~~l~~~l 401 (408)
T PRK04612 334 AQVRGRG-LMLGAVLAPAH----AGQAGAILDLAAE-HGLLLLQA------GPDVLRFVPALNLTDAELADGLARLRLAL 401 (408)
T ss_pred eeeeccc-eEEEEEecCch----hhHHHHHHHHHHH-CCeEEeeC------CCCEEEEcCCccCCHHHHHHHHHHHHHHH
Confidence 2334444 45555553210 0135677777766 89999763 24789998643 48899999999999998
Q ss_pred HHhh
Q 042816 157 QTCK 160 (163)
Q Consensus 157 ~~~~ 160 (163)
.++.
T Consensus 402 ~~~~ 405 (408)
T PRK04612 402 ADYV 405 (408)
T ss_pred HHHh
Confidence 7654
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-06 Score=67.22 Aligned_cols=143 Identities=13% Similarity=0.147 Sum_probs=82.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcccCCC----------hHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFSSVS----------APSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s----------~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
|+ ++.|+||+++ ++++++.+.+...+++.+ ...+..+...+.. +.+++++..+.. ++.+++.+.
T Consensus 203 l~-~~~~~G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~-~~~~~l~~~ 276 (361)
T cd06452 203 MA-ASAPIGVLAT-TEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPH---VKERVKRWDEEV-EKARWFVAE 276 (361)
T ss_pred cc-CCCCeEEEEE-CHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHHHHH
Confidence 45 4459999999 899999887766432211 1112222222221 133344444443 345788899
Q ss_pred hhhc-CCcccc--CCceeEEEeecCCccc--CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHH
Q 042816 72 LRQL-GIECAK--SNGGFYCWADMSGLIS--SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIH 146 (163)
Q Consensus 72 l~~~-g~~~~~--~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~ 146 (163)
|+++ |+++.. +....++.++.+...- .....+..++.++|++ +||.+. +. ..++++|++....++++++
T Consensus 277 L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gI~~~----~~-~~~~~~ri~~~g~~~e~~~ 350 (361)
T cd06452 277 LEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKK-RGIHGI----KP-GLTRYFKLSTYGLTWEQVE 350 (361)
T ss_pred HhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHH-cCceEE----cC-CCceEEEEEecCCCHHHHH
Confidence 9998 887752 2222334455552110 0000123468888876 799953 11 2256899999434889999
Q ss_pred HHHHHHHHHH
Q 042816 147 VVMERIRRIS 156 (163)
Q Consensus 147 ~~~~~l~~~~ 156 (163)
..++.|+++.
T Consensus 351 ~l~~al~~~~ 360 (361)
T cd06452 351 YVVDAFKEIA 360 (361)
T ss_pred HHHHHHHHHh
Confidence 9998887654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-06 Score=68.02 Aligned_cols=142 Identities=10% Similarity=0.055 Sum_probs=86.1
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSML----SDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
+|..|+++|++++ ++++ ..+..... .++.++++..++.+.+ .++.+ .++++++.+.++++.+.+.+ ++
T Consensus 269 l~~~G~pigav~~-~~~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l-~~~~~~~g~~l~~~l~~l~~---~~ 342 (425)
T PRK09264 269 ISGYGLPMALVLI-KPEL-DVWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAF-EKEVKAKGELVRERLEEIAA---KY 342 (425)
T ss_pred cCCCccceEEEEE-chhh-hccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHH---hC
Confidence 4445999999999 7776 34322111 2345555544443333 34332 45555555555554444333 22
Q ss_pred C-CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHH
Q 042816 76 G-IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIR 153 (163)
Q Consensus 76 g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~ 153 (163)
+ +.......|+++|+.++.. .....+++.+.+ +||.+.|+..+ .+.+|++.. .++++++++++++|.
T Consensus 343 ~~~~~~vrg~Gl~~~i~l~~~------~~~~~l~~~~~~-~Gv~~~~~~~~----~~~lr~~p~l~~t~~ei~~~~~~l~ 411 (425)
T PRK09264 343 PGLGAEVRGRGMMQGIDFGDG------ELAGKIAAEAFE-NGLIIETSGPE----DEVVKLLPPLTIDEEELEEGLDILE 411 (425)
T ss_pred CCceecceecccEEEEEecCh------HHHHHHHHHHHH-CCCEEeccCCC----CCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2 2122334678889998652 145678888876 89999875332 356777754 247899999999999
Q ss_pred HHHHHhh
Q 042816 154 RISQTCK 160 (163)
Q Consensus 154 ~~~~~~~ 160 (163)
+++++..
T Consensus 412 ~~l~~~~ 418 (425)
T PRK09264 412 EAVAEVL 418 (425)
T ss_pred HHHHHHH
Confidence 9887653
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=98.65 E-value=6e-07 Score=68.92 Aligned_cols=135 Identities=17% Similarity=0.197 Sum_probs=86.8
Q ss_pred eeEEEEEecCHHHHHHHHHhhc---------------------c--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 042816 7 FRISVIYSYNNSVLAAAKKLAR---------------------F--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRR 63 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~~---------------------~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 63 (163)
.++||+++ ++++++.+..... + .+++.....++..+++.-. +.-++..++...+
T Consensus 206 ~g~g~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~--~~g~~~~~~~~~~ 282 (373)
T cd06453 206 TGIGVLYG-KEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLE--KIGMEAIAAHEHE 282 (373)
T ss_pred CCcEEEEE-chHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHH--HcCHHHHHHHHHH
Confidence 67899999 8888877654321 0 1233333444444343211 1223667777788
Q ss_pred HHHHHHHHhhhc-CCccccCC--ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC------CCCceEE
Q 042816 64 LYVKFVAGLRQL-GIECAKSN--GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------IEPGWFS 134 (163)
Q Consensus 64 ~~~~l~~~l~~~-g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------~~~~~iR 134 (163)
.++++.+.|+++ ++++..+. .+.++++.++.. +..++.+.|.+ +||.+.+|..+.. ..++++|
T Consensus 283 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~l~~-~gi~i~~g~~~~~~~~~~~~~~~~iR 354 (373)
T cd06453 283 LTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGI-------HPHDVATILDQ-YGIAVRAGHHCAQPLMRRLGVPGTVR 354 (373)
T ss_pred HHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCc-------CHHHHHHHHHH-CCEEeccCccchhHHHHHhCCCCeEE
Confidence 899999999888 67765321 233556666642 56788888866 8999998875421 1267999
Q ss_pred EEEec-CChhHHHHHHHHH
Q 042816 135 FSFTL-LTEKDIHVVMERI 152 (163)
Q Consensus 135 i~~~~-~~~~~l~~~~~~l 152 (163)
+|++. .++++++.+++.|
T Consensus 355 is~~~~~t~~di~~~~~~l 373 (373)
T cd06453 355 ASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred EEecCCCCHHHHHHHHhhC
Confidence 99984 3778888887653
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=67.19 Aligned_cols=136 Identities=13% Similarity=0.101 Sum_probs=85.3
Q ss_pred ceeEEEEEecCHHHHHHHHHhhccc------------CCChHH---HHHHHHhcCChH---------HHHHHHHHHHHHH
Q 042816 6 GFRISVIYSYNNSVLAAAKKLARFS------------SVSAPS---QNLLVSMLSDTK---------FVQKFININRERL 61 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~~~------------~~s~~~---q~~~~~~l~~~~---------~~~~~~~~~~~~~ 61 (163)
|.|+||+++ ++++++.+......+ +++... ..++.+++.+.. .+...+++.+++.
T Consensus 221 g~~~G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 299 (397)
T TIGR01976 221 GPHMGILWG-RPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYE 299 (397)
T ss_pred CCceEEEEE-cHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHH
Confidence 668999999 888888766443211 122222 223333332210 0012357778888
Q ss_pred HHHHHHHHHHhhhc-CCccccC-----CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC--------C
Q 042816 62 RRLYVKFVAGLRQL-GIECAKS-----NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH--------C 127 (163)
Q Consensus 62 ~~~~~~l~~~l~~~-g~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~--------~ 127 (163)
.+..+++.+.|+++ ++++..+ .++ ++.+.++.. +..++.+.|.+ +||.|..|..+. .
T Consensus 300 ~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~ 370 (397)
T TIGR01976 300 NRLAEYLLVGLSDLPGVTLYGVARLAARVP-TVSFTVHGL-------PPQRVVRRLAD-QGIDAWAGHFYAVRLLRRLGL 370 (397)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCCccCCCc-eEEEEeCCc-------CHHHHHHHHHH-CCeEEEeCccchHHHHHHhCC
Confidence 88899999999887 4777654 444 445555531 56788888866 899999886653 1
Q ss_pred -CCCceEEEEEec-CChhHHHHHHHH
Q 042816 128 -IEPGWFSFSFTL-LTEKDIHVVMER 151 (163)
Q Consensus 128 -~~~~~iRi~~~~-~~~~~l~~~~~~ 151 (163)
...+++|||+.. .++++++..++.
T Consensus 371 ~~~~~~iRis~~~~~t~~di~~l~~~ 396 (397)
T TIGR01976 371 NDEGGVVRVGLAHYNTAEEVDRLLEA 396 (397)
T ss_pred CCCCCeEEEEeeccCCHHHHHHHHHh
Confidence 125789999954 366777777664
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-06 Score=67.81 Aligned_cols=144 Identities=14% Similarity=0.130 Sum_probs=89.8
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc---c--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR---F--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~---~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
.|+++|++++ ++++++.+..... . ++.+++.+.++...|+--.- ++..++.++.....++.+.+.++++++..
T Consensus 269 ~G~p~ga~~~-~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 346 (426)
T PRK00062 269 GGLPVGAFGG-RREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKE-PGFYEELEALTKRLAEGLKEAAKKAGIPL 346 (426)
T ss_pred CCCcceeeeE-HHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHcCCce
Confidence 6899999999 8999998853321 1 35788888877776653210 23445555555555566666555666544
Q ss_pred -ccCCceeEEEeecCC-ccc------CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHH
Q 042816 80 -AKSNGGFYCWADMSG-LIS------SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMER 151 (163)
Q Consensus 80 -~~~~~g~~~~~~~~~-~~~------~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~ 151 (163)
.++.|.++-+ .+.. ... ..+......+...|++ +||.+.|.. + +.+++++. ++++++++++++
T Consensus 347 ~vrg~G~~~~i-~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~-~Gv~v~~~~-~-----~~~~~~~~-~t~~ei~~~~~~ 417 (426)
T PRK00062 347 TVNRVGSMFGL-FFTDEPVTNYADAKKSDTERFARFFHAMLD-EGVYLAPSQ-F-----EAGFVSAA-HTDEDIEKTLEA 417 (426)
T ss_pred EEEEecceEEE-EEecCCCcchhhhccccHHHHHHHHHHHHH-CCeEeecCC-c-----Cceeeecc-CCHHHHHHHHHH
Confidence 3356665533 3321 100 0011123578888876 899998742 2 34677755 499999999999
Q ss_pred HHHHHHHh
Q 042816 152 IRRISQTC 159 (163)
Q Consensus 152 l~~~~~~~ 159 (163)
+.+++.++
T Consensus 418 l~~~l~~~ 425 (426)
T PRK00062 418 ARKAFAAL 425 (426)
T ss_pred HHHHHHhh
Confidence 99998764
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-06 Score=67.22 Aligned_cols=147 Identities=13% Similarity=0.139 Sum_probs=93.4
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhh---------------------cc-c-CCChHHHHHHHHhcCChHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLA---------------------RF-S-SVSAPSQNLLVSMLSDTKFVQKFININR 58 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~---------------------~~-~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 58 (163)
+|.+| +||+++ ++++++.+.... .+ . +++.....++..+++.-. +.-+++.+
T Consensus 237 ~gp~G--~G~l~~-~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~--~~g~~~i~ 311 (424)
T PLN02855 237 CGPTG--IGFLWG-KSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLS--EIGMDRIH 311 (424)
T ss_pred cCCCc--cEEEEE-chhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHH--HhCHHHHH
Confidence 45455 899999 788776653220 01 1 133333344444443211 22356777
Q ss_pred HHHHHHHHHHHHHhhhc-CCccccCCc------eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC----
Q 042816 59 ERLRRLYVKFVAGLRQL-GIECAKSNG------GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC---- 127 (163)
Q Consensus 59 ~~~~~~~~~l~~~l~~~-g~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~---- 127 (163)
++..+..+.+.+.|+++ |+++..+.. +-++.+.++.. +..++.+.|.+++||.+..|.....
T Consensus 312 ~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~-------~~~~v~~~L~~~~gI~v~~g~~c~~~~~~ 384 (424)
T PLN02855 312 EYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGI-------HPTDLSTFLDQQHGVAIRSGHHCAQPLHR 384 (424)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCc-------CHHHHHHHhcccCCEEEechhhhhHHHHH
Confidence 77888888888888887 777664321 22444566642 5678888886644999998874321
Q ss_pred --CCCceEEEEEec-CChhHHHHHHHHHHHHHHHhh
Q 042816 128 --IEPGWFSFSFTL-LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 128 --~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~ 160 (163)
.-++++|+|+.. .+.++++..++.|.+++..++
T Consensus 385 ~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 385 YLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred HhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 115789999953 278999999999999887764
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.6e-06 Score=65.78 Aligned_cols=121 Identities=15% Similarity=0.235 Sum_probs=87.6
Q ss_pred cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccccCCc---eeEEEeecCCcccCCChhhHH
Q 042816 30 SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECAKSNG---GFYCWADMSGLISSYSEKGEL 105 (163)
Q Consensus 30 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~ 105 (163)
.+++.+.+.++...++.. .++++...+++++.++++.+.|+++ |+++..+.. +.++.+.++. + +..
T Consensus 236 gt~~~~~~~al~~al~~~---~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~ 305 (382)
T TIGR03403 236 GTLNVPYIVAMGEAMRLA---NEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKG-V------EGE 305 (382)
T ss_pred CCcChHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCC-C------CHH
Confidence 567888887777777543 4557888899999999999999887 777776531 2233445543 1 566
Q ss_pred HHHHHHHHhcCeEEcCCCCCCC--------------C---CCceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 106 ELWDKLLNVAKVNVTPGSSCHC--------------I---EPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 106 ~~~~~l~~~~gi~v~pg~~f~~--------------~---~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
.+...|. ++||.++.|+.+.. . ..+.+|+|+.. .+.++++.+++.|.+++++++.
T Consensus 306 ~~~~~L~-~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 306 AMLWDLN-KAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLRA 378 (382)
T ss_pred HHHHhhc-cCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 7777765 48999998765421 0 13689999975 4888999999999998887754
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.4e-06 Score=65.61 Aligned_cols=146 Identities=11% Similarity=0.048 Sum_probs=91.3
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc-c-CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF-S-SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAK 81 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~-~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 81 (163)
++|-+.|++.+ ++++++.+.+...+ . ++.++...+++..+..-. ....+..++.+.++.++|.+.|.+.|+++..
T Consensus 288 L~GP~GG~I~~-~~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~--~~ef~~y~~~l~~Na~~La~~L~~~G~~vv~ 364 (493)
T PRK13580 288 LRGPRGGLVLA-KKEYADAVDKGCPLVLGGPLPHVMAAKAVALAEAR--TPEFQKYAQQVVDNARALAEGFLKRGARLVT 364 (493)
T ss_pred ccCCCeEEEEe-cHHHHHHHhhCCCcccCCCccHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHHHHHhcCCCccC
Confidence 45677899999 89999988655443 2 333333332232332210 1111456788888999999999999988752
Q ss_pred -CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-CCC---CceEEEEEec-----CChhHHHHHHHH
Q 042816 82 -SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH-CIE---PGWFSFSFTL-----LTEKDIHVVMER 151 (163)
Q Consensus 82 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~-~~~---~~~iRi~~~~-----~~~~~l~~~~~~ 151 (163)
..-+-.+++++...- .......+.|. +.||.+.+-.... +.+ +..|||++.. ++.++++...+.
T Consensus 365 ggTdshIV~V~lg~~~-----~~g~~a~~~L~-e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~ 438 (493)
T PRK13580 365 GGTDNHLVLIDVTSFG-----LTGRQAESALL-DAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAEL 438 (493)
T ss_pred CCCCCCEEEEEeCCHH-----HHHHHHHHHHH-HCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHH
Confidence 122345677776421 12234555555 5899998643222 222 6789999864 346889999999
Q ss_pred HHHHHHH
Q 042816 152 IRRISQT 158 (163)
Q Consensus 152 l~~~~~~ 158 (163)
|.+++..
T Consensus 439 l~~~l~~ 445 (493)
T PRK13580 439 IVKVLSN 445 (493)
T ss_pred HHHHHHh
Confidence 9887764
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.6e-06 Score=60.89 Aligned_cols=141 Identities=18% Similarity=0.276 Sum_probs=102.3
Q ss_pred CCCCCceeEEEEEe--cCHHHHHHHHHhhc------ccCCChHHHHHHHHhcCChHHHHHHH---HHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYS--YNNSVLAAAKKLAR------FSSVSAPSQNLLVSMLSDTKFVQKFI---NINRERLRRLYVKFV 69 (163)
Q Consensus 1 ~~~~~G~RiG~~i~--~~~~~~~~~~~~~~------~~~~s~~~q~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~l~ 69 (163)
.||+.+=|+|-+.. .++..+..+..... .++++.....++.+.|+.++..++|. +.+-.+++++|..|.
T Consensus 254 NfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLr 333 (410)
T KOG1412|consen 254 NFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALR 333 (410)
T ss_pred hcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999998655 46766666554443 25677777899999999987644443 444556666666666
Q ss_pred HHhhhc---C-CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHH
Q 042816 70 AGLRQL---G-IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDI 145 (163)
Q Consensus 70 ~~l~~~---g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l 145 (163)
+.|..+ | ++=+..+.|+|-+.-+. ..-++.|.+++.|++.+ .+ ||+++.++..++
T Consensus 334 d~L~aL~TPGtWDHI~~QiGMFSyTGLt-----------p~qV~~li~~h~vyLl~------~G----RInisGLN~~Nv 392 (410)
T KOG1412|consen 334 DHLVALKTPGTWDHITQQIGMFSYTGLT-----------PAQVDHLIENHKVYLLS------DG----RINISGLNMKNV 392 (410)
T ss_pred HHHHhcCCCCcHHHHHhhccceeecCCC-----------HHHHHHHHHhceEEEec------CC----cEeeeccccccH
Confidence 666666 2 55556788998887665 44566788889999875 12 899988899999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 042816 146 HVVMERIRRISQTCKSH 162 (163)
Q Consensus 146 ~~~~~~l~~~~~~~~~~ 162 (163)
+...+.|.+.++.++.+
T Consensus 393 eyVAkAIde~Vr~~~~~ 409 (410)
T KOG1412|consen 393 EYVAKAIDETVRAIKSN 409 (410)
T ss_pred HHHHHHHHHHHHhhccC
Confidence 99999999998877653
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.7e-06 Score=64.39 Aligned_cols=142 Identities=15% Similarity=0.200 Sum_probs=90.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHh----------------------hcc--cCCChHHHHHHHHhcCChHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKL----------------------ARF--SSVSAPSQNLLVSMLSDTKFVQKFININ 57 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~----------------------~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 57 (163)
+|.+| +||+++ ++++++.+... ..+ .+++.+...++..+++.-. +.-++..
T Consensus 228 ~gp~G--~G~l~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~--~~g~~~i 302 (406)
T PRK09295 228 YGPTG--IGILYV-KEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVS--ALGLNNI 302 (406)
T ss_pred cCCCC--cEEEEE-chHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHH--HhCHHHH
Confidence 56565 799999 88876654210 001 1355555555555554321 1123566
Q ss_pred HHHHHHHHHHHHHHhhhc-CCccccCC--ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC------C
Q 042816 58 RERLRRLYVKFVAGLRQL-GIECAKSN--GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------I 128 (163)
Q Consensus 58 ~~~~~~~~~~l~~~l~~~-g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------~ 128 (163)
.++.++..+++.+.|+++ |+++..|. .++..+ .++.. +..++.+.| +++||.|.+|..... .
T Consensus 303 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~-~~~~~-------~~~~~~~~L-~~~gI~v~~g~~c~~~~~~~~~ 373 (406)
T PRK09295 303 AEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAF-NLGKH-------HAYDVGSFL-DNYGIAVRTGHHCAMPLMAYYN 373 (406)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEE-EECCc-------CHHHHHHHH-HhCCeEEeccccchHHHHHHHC
Confidence 677788888899998887 77776543 454433 45532 556777766 458999999874431 1
Q ss_pred CCceEEEEEec-CChhHHHHHHHHHHHHHH
Q 042816 129 EPGWFSFSFTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 129 ~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
.++++|+|+.. .+.++++..++.|+++..
T Consensus 374 ~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 374 VPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred CCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 25789999974 377889999998887643
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.4e-06 Score=64.11 Aligned_cols=135 Identities=11% Similarity=0.043 Sum_probs=85.5
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc---cCCChHHHH-HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF---SSVSAPSQN-LLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~---~~~s~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.|.+.||+.+ ++++++.+.+.... ++.+++... ++...++-. .. -...++.+.++.+++.+. .|+.+
T Consensus 321 ~G~~GGfi~g-s~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~---~~-~~~~r~~L~~n~~~fr~~---~G~~~- 391 (476)
T PLN02955 321 AGCHGGFIAC-SKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVA---RK-EKWRRKAIWERVKEFKAL---SGVDI- 391 (476)
T ss_pred hhccCceeec-HHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHh---cCCCC-
Confidence 4678899999 88999998877662 333443333 222222211 11 123566777777777763 25553
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-CCCceEEEEEec-CChhHHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-IEPGWFSFSFTL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
++..+-+.++.. ....+++++|++ +||.+.+...... .+...+||+++. ++.++++..++.|.++...
T Consensus 392 ---~sPI~pI~ig~~------~~a~~~~~~L~~-~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~ 461 (476)
T PLN02955 392 ---SSPIISLVVGNQ------EKALKASRYLLK-SGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDF 461 (476)
T ss_pred ---CCCEEEEEeCCH------HHHHHHHHHHHH-CCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhh
Confidence 122333333332 266788999887 8999987554433 235689999965 6889999999999887654
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.3e-06 Score=62.84 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=81.4
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh-c-CCccccCC-----ceeEEEeecCCcccCCChhh
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ-L-GIECAKSN-----GGFYCWADMSGLISSYSEKG 103 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~ 103 (163)
+++.+.-.++..+++.. .++++...+.+++.++.+.+.|++ + ++.+..+. +.+.+|++.+ +
T Consensus 233 t~~~~~~~~l~~al~~~---~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 300 (379)
T TIGR03402 233 TENVPGIVGLGKAAELA---TEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYI---------E 300 (379)
T ss_pred CccHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCC---------C
Confidence 34444444444444432 455677778888889999998875 5 66555432 3455565433 4
Q ss_pred HHHHHHHHHHhcCeEEcCCCCCCCC-----------------CCceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 104 ELELWDKLLNVAKVNVTPGSSCHCI-----------------EPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 104 ~~~~~~~l~~~~gi~v~pg~~f~~~-----------------~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
..++...|. ++||.|.+|..|... .++.+|+|+.. .+.++++.+++.|+++++++..
T Consensus 301 ~~~~~~~l~-~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 301 GEAILLLLD-MEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred HHHHHHhhc-cCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 577888664 589999999876432 14789999975 4889999999999998887654
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-05 Score=60.15 Aligned_cols=134 Identities=20% Similarity=0.163 Sum_probs=88.8
Q ss_pred EEEEEecCHHHHHHHHHhhcc---cCCChHHH-HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCc
Q 042816 9 ISVIYSYNNSVLAAAKKLARF---SSVSAPSQ-NLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNG 84 (163)
Q Consensus 9 iG~~i~~~~~~~~~~~~~~~~---~~~s~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~ 84 (163)
-||+.+ +..+++.+.+...+ ++.-+|.+ .++...++.- +.-...++.+.++...+.+.++..|+.+.++..
T Consensus 248 Gg~v~g-~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l----~~~~~~r~~L~~~~~~~~~~~~~~~~~~~~s~s 322 (388)
T COG0156 248 GGYIAG-SAALIDYLRNRARPFIFSTALPPAVAAAALAALRIL----EEGPERRERLQELAAFFRSLLKALGLVLLPSES 322 (388)
T ss_pred CceeeC-cHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHH----HhCHHHHHHHHHHHHHHHHHHHhcCCccCCCCC
Confidence 378888 99999999887662 33333333 3444444432 223566777778888888777776877765555
Q ss_pred eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-CCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 85 GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-IEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
.+ +.+.+... ..+..++..|++ .||.+.+...... .+...+|++++. +++++++..++.+.++
T Consensus 323 ~I-~pv~~gd~------~~a~~~s~~l~~-~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 323 PI-IPVILGDE------ERALEASRALLE-EGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred Ce-eeeEeCCH------HHHHHHHHHHHH-CCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 43 33333321 267899999988 5999998654443 346899999975 5778888877777654
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=4e-05 Score=59.59 Aligned_cols=148 Identities=9% Similarity=-0.008 Sum_probs=88.1
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc--ccCC--ChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc--
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR--FSSV--SAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC-- 79 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~--~~~~--s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~-- 79 (163)
|.+.||+++ ++++++.+..... .++. +++.+.++...+... .+ .+..++.+.++.+++.+.|++.+...
T Consensus 213 g~~gg~v~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~---~~-~~~~~~~l~~~~~~l~~~L~~~~~~~~~ 287 (392)
T PLN03227 213 GSVGGMTVG-SEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGE---LA-GPQLLNRLHDSIANLYSTLTNSSHPYAL 287 (392)
T ss_pred hccCcEEec-CHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 577899988 8898887765433 1233 344555555444332 11 24566777888888888887543221
Q ss_pred --------ccCCceeEEEeecCCcccCC---ChhhHHHHHHHHHHhcCeEEcCCCC-----CCCCCCceEEEEEec-CCh
Q 042816 80 --------AKSNGGFYCWADMSGLISSY---SEKGELELWDKLLNVAKVNVTPGSS-----CHCIEPGWFSFSFTL-LTE 142 (163)
Q Consensus 80 --------~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~gi~v~pg~~-----f~~~~~~~iRi~~~~-~~~ 142 (163)
.....|..+-+.+...-... ......++++.+++ +|+.+.+... +...++..+|+++.. +++
T Consensus 288 ~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~ 366 (392)
T PLN03227 288 KLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLS-EGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTR 366 (392)
T ss_pred ccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHH-CCCEEEecccccCCcCCCCCCceEEEEecCCCCH
Confidence 11122344555554310000 00012478888876 8999865211 111226789999965 699
Q ss_pred hHHHHHHHHHHHHHHHh
Q 042816 143 KDIHVVMERIRRISQTC 159 (163)
Q Consensus 143 ~~l~~~~~~l~~~~~~~ 159 (163)
|+++++++.|.+++++.
T Consensus 367 eei~~~~~~l~~~~~~~ 383 (392)
T PLN03227 367 EDIDKLLTVLGEAVEAI 383 (392)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988764
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.1e-05 Score=58.68 Aligned_cols=143 Identities=13% Similarity=0.118 Sum_probs=89.8
Q ss_pred CCCCcee-EEEEEecCHHHHHHHHHhhc----ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 2 LSLPGFR-ISVIYSYNNSVLAAAKKLAR----FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 2 ~~~~G~R-iG~~i~~~~~~~~~~~~~~~----~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
|+.+|.+ .||+++ ++++++.+..... ..+++...|.+...+.... .+....+.+.++++.+.+.|++++
T Consensus 225 l~g~g~~~gG~iv~-~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~-----tl~~r~~~~~~~a~~la~~L~~~~ 298 (418)
T PLN02242 225 ISGGADIIAGAVCG-PAELVNSMMDLHHGALMLLGPTMNPKVAFELSERLP-----HLSLRMKEHCRRAMEYAKRMKELG 298 (418)
T ss_pred cCCCCCceEEEEEc-CHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCC-----cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6778887 599999 8999998887744 3466667787777776643 233455688899999999999987
Q ss_pred CccccCC-------------------ceeEEEeecCCcccCCChhhHHHHHHHHHHhc----CeEEcCCCCCC-------
Q 042816 77 IECAKSN-------------------GGFYCWADMSGLISSYSEKGELELWDKLLNVA----KVNVTPGSSCH------- 126 (163)
Q Consensus 77 ~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----gi~v~pg~~f~------- 126 (163)
+++..|. .|-.+.+++.. ......|.+.|.- - .+.+.-|..-.
T Consensus 299 ~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~------~~~~~~f~~~l~~-~~~~~~~~~slG~~~sl~~~p~~ 371 (418)
T PLN02242 299 LKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDT------EERANRLMRYLQN-STQFGFMAVSLGYYETLMSCSGS 371 (418)
T ss_pred CEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECC------HHHHHHHHHHhhc-ccccceeeecCCCCCceeeCCCc
Confidence 6666442 12234445532 1245566665531 1 12222221110
Q ss_pred --------------CCCCceEEEEEecCChh-HHHHHHHHHHHHHHHhh
Q 042816 127 --------------CIEPGWFSFSFTLLTEK-DIHVVMERIRRISQTCK 160 (163)
Q Consensus 127 --------------~~~~~~iRi~~~~~~~~-~l~~~~~~l~~~~~~~~ 160 (163)
...++-+|||++- | +.+..++-|.+++.+.+
T Consensus 372 ~~~~~~~~~~~~~~gi~~~liRlsvGl---E~~~~dli~dl~~al~~~~ 417 (418)
T PLN02242 372 STSSELDPEEKAAAGISPGLVRMSVGY---TGTLEQRWSQFEKALSAMK 417 (418)
T ss_pred cccccCCHHHHHhcCCCCCeEEEEecC---CCCHHHHHHHHHHHHHHhh
Confidence 0115689999997 5 36777777777776654
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.9e-05 Score=60.30 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=52.8
Q ss_pred CC-CCceeEEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 2 LS-LPGFRISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 2 ~~-~~G~RiG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
|| .+|+|+||+++ ++++++.+.+....+ +++++.|.++...|+.- . ...+...+++..+.+.|+++ ++
T Consensus 243 ~gG~~glr~G~vv~-~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl---~----~R~~~~~~~a~~la~~L~~~p~V 314 (427)
T PRK07049 243 VGGHSDLVAGAVLG-RKALIRQVRALRSAIGTQLDPHSCWMLGRSLETL---V----LRMERANRNARAVAEFLRDHPKV 314 (427)
T ss_pred ecCCCCcEEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCChH---H----HHHHHHHHHHHHHHHHHHhCCCc
Confidence 45 79999999999 899999998877653 58888999888888642 2 22334488899999999988 53
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.6e-06 Score=62.83 Aligned_cols=109 Identities=18% Similarity=0.207 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccc-cCCceeEEEeecCCcccCCChhhHHHHHHHHH
Q 042816 35 PSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECA-KSNGGFYCWADMSGLISSYSEKGELELWDKLL 112 (163)
Q Consensus 35 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 112 (163)
+.+.++..++.. ..+++..+...+..+++.+.|+++ ++++. ++++++..|. ++... ..+ .+..++.+.|.
T Consensus 232 ~~~~~~l~~l~~-----~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~-~~~~~-~~~-~~~~~i~~~L~ 303 (345)
T cd06450 232 LKLWATLRRFGR-----DGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFR-LKPSV-KLD-ELNYDLSDRLN 303 (345)
T ss_pred HHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEE-ECCcc-hhh-HHHHHHHHHHH
Confidence 334444455543 334666777778899999999888 77654 4667766664 44310 000 15678888887
Q ss_pred HhcCeEEcCCCCCCCCCCceEEEEEec-C-ChhHHHHHHHHHHH
Q 042816 113 NVAKVNVTPGSSCHCIEPGWFSFSFTL-L-TEKDIHVVMERIRR 154 (163)
Q Consensus 113 ~~~gi~v~pg~~f~~~~~~~iRi~~~~-~-~~~~l~~~~~~l~~ 154 (163)
+ +|+.+.++..+. .++++|+++.. . +.++++.+++.|.+
T Consensus 304 ~-~g~~~~~~~~~~--~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 304 E-RGGWHVPATTLG--GPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred h-cCCEEEEeeEEC--CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 6 666665555443 36899999985 2 77888888887764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00016 Score=57.19 Aligned_cols=148 Identities=10% Similarity=0.124 Sum_probs=82.2
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKS 82 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 82 (163)
.|+++|++++ ++++.+.+..... .++.+++...++...|+.-+. ++..++.++.-...++.+.+..+++.+-....
T Consensus 280 ~G~p~gav~~-~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vr 357 (445)
T PRK08593 280 GGMPMSAIVG-RKEIMESLEAPAHLFTTGANPVSCAAALATIDMIED-ESLLQRSAEKGEYARKRFDQWVSKYNFVGDVR 357 (445)
T ss_pred CCcccEEEEE-cHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 3689999999 8999888853222 235667776656555542110 12222222222222233333222332211112
Q ss_pred CceeEEEeecCCc--ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 83 NGGFYCWADMSGL--ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 83 ~~g~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
.-|+++.+++... ...........++..+++ +||.+.+.. .+.+|++... +++++++.+++.+.+++.++
T Consensus 358 G~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~~------~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 430 (445)
T PRK08593 358 GYGLSIGIDIVSDKKLKTRDNEAALKICNYCFE-HGVVIIAVA------GNVLRFQPPLVITYEQLDTALNTIEQAFTAL 430 (445)
T ss_pred ccceEEEEEEecCCCcCCCcHHHHHHHHHHHHH-CCeEEeccC------CCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 3344444554321 011111234578888876 899997631 3578888764 58899999999999998876
Q ss_pred hh
Q 042816 160 KS 161 (163)
Q Consensus 160 ~~ 161 (163)
.+
T Consensus 431 ~~ 432 (445)
T PRK08593 431 EA 432 (445)
T ss_pred hc
Confidence 43
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00011 Score=56.35 Aligned_cols=138 Identities=12% Similarity=0.051 Sum_probs=95.8
Q ss_pred EEEEEecCHHHHHHHHHhhc-c-cCCChH--HHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 042816 9 ISVIYSYNNSVLAAAKKLAR-F-SSVSAP--SQNLLV---SMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAK 81 (163)
Q Consensus 9 iG~~i~~~~~~~~~~~~~~~-~-~~~s~~--~q~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 81 (163)
-|||.+ ...+++.++.+.. + +++|.+ ....+. .+++.. +-+..|+..+++..++.+.|.+.|+.+.+
T Consensus 379 GGYIAa-t~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~-----eg~~lR~~hqrnv~~~kq~l~~~GiPVi~ 452 (570)
T KOG1360|consen 379 GGYIAA-TRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSE-----EGRVLRRQHQRNVKYVKQLLMELGIPVIP 452 (570)
T ss_pred cceehh-hhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 489999 8999999999988 3 333332 223222 333332 23677888889999999999999999886
Q ss_pred CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-CCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 82 SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH-CIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~-~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
...-+ +=+.+... .-+...++.|+.++||+|+.-.... ..+++.+||.-.+ ++.+-++..++.+.+++++.
T Consensus 453 ~pSHI-iPv~vgda------~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 453 NPSHI-IPVRVGDA------ALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEV 525 (570)
T ss_pred CCcce-eeeeccCH------HHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 54421 22223221 2567889999999999998754332 2347889998876 46677888888888888764
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.9e-05 Score=58.51 Aligned_cols=137 Identities=12% Similarity=0.118 Sum_probs=80.5
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc----c---CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF----S---SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL- 75 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~----~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 75 (163)
++|.+.|+++. ++++++.+...... . ..+..++.++...+.+. -....+.+.++++.+.+.|+++
T Consensus 211 l~gp~~G~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~------~~~~~~~~~~~~~~l~~~L~~i~ 283 (363)
T TIGR01437 211 IEGPTSGLVLG-KKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLST------GKESGAEMVAKLTPFIEALNTLK 283 (363)
T ss_pred cCCCceEEEEE-cHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHcc------CcccHHHHHHHHHHHHHHHhcCC
Confidence 67889999999 88888876433221 1 11222333333332221 1223334445677899999988
Q ss_pred CCccccCC--ceeE---EEeecCCcccCCChhhHHHHHHHHHHhcC--eEEcCCCCCCCCCCceEEEEEecCChhHHHHH
Q 042816 76 GIECAKSN--GGFY---CWADMSGLISSYSEKGELELWDKLLNVAK--VNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVV 148 (163)
Q Consensus 76 g~~~~~~~--~g~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--i~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~ 148 (163)
|+++..+. .+.. .-+.+... +.+ .+..++.+.|.+ ++ |.+++ .|.. .+.+|++....++++++..
T Consensus 284 g~~~~~~~~~~~~~~~~~~v~~~~~--~~g-~~~~~l~~~L~~-~~~~I~~r~--~~~~--~~~~~l~~~~~~~~e~~~~ 355 (363)
T TIGR01437 284 GVSASIVQDEAGRDIARAEIRFDES--ELG-MTAADVVQALRQ-GEPAIYTRG--YKAN--EGIIEIDPRSVTGGQLDII 355 (363)
T ss_pred CeEEEEecCCCCCcCceEEEEEecc--CCC-CCHHHHHHHHhc-CCCCEEEee--eeec--CCeEEEEeecCCHHHHHHH
Confidence 87776321 1111 11222210 001 277899998865 66 66655 3443 6789999988788898888
Q ss_pred HHHHHHH
Q 042816 149 MERIRRI 155 (163)
Q Consensus 149 ~~~l~~~ 155 (163)
.++|.++
T Consensus 356 ~~~l~~~ 362 (363)
T TIGR01437 356 VERIREI 362 (363)
T ss_pred HHHHHHh
Confidence 8888765
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00027 Score=54.16 Aligned_cols=140 Identities=8% Similarity=0.082 Sum_probs=89.2
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHh----------h---c-ccCCChHHHHHHHHhcCChHHHHHH--HHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKL----------A---R-FSSVSAPSQNLLVSMLSDTKFVQKF--ININRERLRRLY 65 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~----------~---~-~~~~s~~~q~~~~~~l~~~~~~~~~--~~~~~~~~~~~~ 65 (163)
||.|| +|++++ ++++++.+... . . +.+++...-.++..+|+.- .+. ++...+++++..
T Consensus 187 lgP~G--lg~l~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l---~~~gG~e~i~~r~~~l~ 260 (349)
T TIGR01364 187 IGPAG--LTVVIV-RKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWL---KEQGGVKAIEKRNQAKA 260 (349)
T ss_pred cCCCc--eEEEEE-CHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHH
Confidence 56555 788888 77777654221 1 1 1245555555555555432 222 688899999999
Q ss_pred HHHHHHhhhc-CCcccc--C--CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-
Q 042816 66 VKFVAGLRQL-GIECAK--S--NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL- 139 (163)
Q Consensus 66 ~~l~~~l~~~-g~~~~~--~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~- 139 (163)
+++.+.|+++ |+.... + ..+..+-+.++... ...++...+.+ .|+.+.+|.. ..+.+|+|+..
T Consensus 261 ~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~------~~~~~~~~~~~-~Gi~~~~~~~----~~g~vRvS~~~~ 329 (349)
T TIGR01364 261 QLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEE------LEKRFLKEAEE-RGLVSLKGHR----SVGGMRASIYNA 329 (349)
T ss_pred HHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChh------HhHHHHHHHHH-CCCcccCCcc----ccCeeEEECcCC
Confidence 9999999999 653331 1 22233444555321 23566565655 8998888765 13689999865
Q ss_pred CChhHHHHHHHHHHHHHHH
Q 042816 140 LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 140 ~~~~~l~~~~~~l~~~~~~ 158 (163)
.+.++++..++.|+++.++
T Consensus 330 nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 330 MPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4789999999998886654
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00014 Score=56.46 Aligned_cols=145 Identities=11% Similarity=0.072 Sum_probs=83.1
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc--------cC--CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF--------SS--VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~--------~~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
++.|+||+++ ++++++.+.+.... ++ .......++...+. .+.+..++ .+...++.+++.+.|++
T Consensus 224 ~~~~~G~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~---~~~~~~~~-~~~~~~~~~~l~~~L~~ 298 (387)
T PRK09331 224 ASAPSGVLAT-TEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFP---HVVERVKR-WDEEVKKARWFVDELEK 298 (387)
T ss_pred CCCCEEEEEE-CHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 4459999999 88988887654321 11 11111111111221 11233333 33445677788999999
Q ss_pred c-CCcccc--CCceeEEEeecCCccc--CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHH
Q 042816 75 L-GIECAK--SNGGFYCWADMSGLIS--SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVM 149 (163)
Q Consensus 75 ~-g~~~~~--~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~ 149 (163)
+ |+++.. +...-++.++.|.... .....+...+.+.|.+ +||.+.+. .....+|+....+++++++..+
T Consensus 299 l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gI~~~~~-----~~~~i~ri~~~g~t~~di~~l~ 372 (387)
T PRK09331 299 IEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKK-RGIHGIKP-----GATKEFKLSTYGLTWEQVEYVA 372 (387)
T ss_pred CCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHH-cCceEEcc-----CCceEEEEEeccCCHHHHHHHH
Confidence 9 888773 2223334456552110 0001134568888865 79984331 1245677777456889999999
Q ss_pred HHHHHHHHHhh
Q 042816 150 ERIRRISQTCK 160 (163)
Q Consensus 150 ~~l~~~~~~~~ 160 (163)
+.|.++.+++.
T Consensus 373 ~aL~~i~~~~~ 383 (387)
T PRK09331 373 DAFKEIAEKYG 383 (387)
T ss_pred HHHHHHHHhcC
Confidence 99998877653
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00017 Score=53.27 Aligned_cols=140 Identities=13% Similarity=0.106 Sum_probs=90.6
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc---cCCChHH-----HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF---SSVSAPS-----QNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~---~~~s~~~-----q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
+.|---||..+ |++++.-+++...+ +++-+|+ ..+...++.+. + .....+.+.+.+.+.+...
T Consensus 265 lGga~GGyttg-p~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~----~----~i~~~~a~~qrfr~~me~a 335 (417)
T KOG1359|consen 265 LGGASGGYTTG-PKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSS----K----EIQSRQANTQRFREFMEAA 335 (417)
T ss_pred hcCCCCCCccC-ChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhH----H----HHHHHHHHHHHHHHHHHhc
Confidence 34566799999 99999999887773 2222211 22333333332 2 2333445677788888778
Q ss_pred CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-CCCCceEEEEEec-CChhHHHHHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH-CIEPGWFSFSFTL-LTEKDIHVVMERIR 153 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~-~~~~~~iRi~~~~-~~~~~l~~~~~~l~ 153 (163)
|+++...+..+ +|..++.. .-+..++++|++ .||+|..-+... ++++..+|+.++. +++|++++.++.+.
T Consensus 336 GftIsg~~hPI-----~pv~lGda--~lA~~~ad~lLk-~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~ 407 (417)
T KOG1359|consen 336 GFTISGASHPI-----CPVMLGDA--RLASKMADELLK-RGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFS 407 (417)
T ss_pred CceecCCCCCc-----cceecccH--HHHHHHHHHHHh-cCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHH
Confidence 99988744321 22222110 246788999998 899998544333 2346788888865 68899999999999
Q ss_pred HHHHHhh
Q 042816 154 RISQTCK 160 (163)
Q Consensus 154 ~~~~~~~ 160 (163)
++.+.++
T Consensus 408 ~vgr~~~ 414 (417)
T KOG1359|consen 408 EVGRFLN 414 (417)
T ss_pred HHHHhhc
Confidence 9887664
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0002 Score=56.22 Aligned_cols=138 Identities=10% Similarity=0.061 Sum_probs=80.6
Q ss_pred CCceeEEEEEecCHHHHHHHHHh---hc--c---cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKL---AR--F---SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~---~~--~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
.+++++|++++ ++++.+.+... .. . ++.+++...++...++.-+- +++.++..+ .-+.+.+.|++.
T Consensus 273 gG~~p~~av~~-~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~-~~~~~~~~~----~g~~l~~~l~~l 346 (423)
T PRK05964 273 GGYLPLAATLC-TAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFED-EPVLERVAA----LSAGLAEGLEPF 346 (423)
T ss_pred cCcccceEEEE-cHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHH----HHHHHHHHHHhh
Confidence 34489999999 99999888542 11 1 24566776666555542100 122333333 333333333332
Q ss_pred ----CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHH
Q 042816 76 ----GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVME 150 (163)
Q Consensus 76 ----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~ 150 (163)
++.-.... |..+.+.+...- .......+.+.|.+ +||.+.|. .+.+|++... +++++++.+++
T Consensus 347 ~~~~~i~~vrg~-Gl~~~i~l~~~~---~~~~~~~l~~~l~~-~Gv~v~~~-------~~~lR~~p~l~~t~edId~~v~ 414 (423)
T PRK05964 347 RDLPGVADVRVL-GAIGAVELDRPV---LERDGPALRAFALE-RGVLLRPL-------GNTIYLMPPYIITAEELDRITD 414 (423)
T ss_pred ccCCCeEEeecc-cEEEEEEeccCc---chhHHHHHHHHHHH-CCeEEEec-------CCEEEEeCCcccCHHHHHHHHH
Confidence 22212233 444455554310 00125678888876 89999863 1479998762 48899999999
Q ss_pred HHHHHHHHh
Q 042816 151 RIRRISQTC 159 (163)
Q Consensus 151 ~l~~~~~~~ 159 (163)
.+.+++.++
T Consensus 415 ~l~~al~~~ 423 (423)
T PRK05964 415 AIVEVADEL 423 (423)
T ss_pred HHHHHHhhC
Confidence 999998764
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00021 Score=56.52 Aligned_cols=144 Identities=7% Similarity=0.006 Sum_probs=83.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh----c
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ----L 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~ 75 (163)
+|. |+++|++++ +++ .+.+..... .++.+++++.++.+.|+.- ++ +...+.++++.+++.+.|++ +
T Consensus 277 l~~-G~Pigav~~-~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i---~~--~~l~~~~~~~g~~l~~~L~~l~~~~ 348 (442)
T TIGR00709 277 VGG-GLPLAVLLI-APE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYW---KD--DNLAQNAQERGERITSFLDDMIKEH 348 (442)
T ss_pred ccC-CcccEEEEE-chH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455 899999999 777 454422111 2567888888888777531 11 12333444444455444443 2
Q ss_pred C-CccccCCceeEEEeecCCc--cc------CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHH
Q 042816 76 G-IECAKSNGGFYCWADMSGL--IS------SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDI 145 (163)
Q Consensus 76 g-~~~~~~~~g~~~~~~~~~~--~~------~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l 145 (163)
+ +.-.. .-|.++-+++.+. .+ .....-...+...+++ +||.+.++... .+.+|+..+. ++++++
T Consensus 349 ~~v~~vr-G~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~~~----~~~l~~~Ppl~it~~ei 422 (442)
T TIGR00709 349 PCIGNVR-GRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFE-NGLLLETGGRE----GEVFRLLCPITIDQEEC 422 (442)
T ss_pred CCeeeee-ccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHH-CCeEEeecCCC----CCEEEEECCCCCCHHHH
Confidence 2 22222 3345555566321 00 0001123456666766 89999763221 3678887764 589999
Q ss_pred HHHHHHHHHHHHHh
Q 042816 146 HVVMERIRRISQTC 159 (163)
Q Consensus 146 ~~~~~~l~~~~~~~ 159 (163)
+++++++.+++.+.
T Consensus 423 ~~~~~~l~~~l~~~ 436 (442)
T TIGR00709 423 EEGISRFKQAVEEA 436 (442)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00036 Score=54.04 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=45.5
Q ss_pred ceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
|.|+||+++ ++++++.+.+....++.+.... .+..++... ++++...+...++++.+.+.|+++
T Consensus 198 ~~~~G~~~~-~~~l~~~l~~~~~~~g~~~~~~-~a~~~l~~~----~~l~~r~~~~~~n~~~l~~~L~~~ 261 (376)
T PRK06460 198 DVIAGLAAG-YGKLLNVIDQMRRTLGTSLDPH-AAYLTLRGI----KTLKIRMDVINRNAEQIAEFLEGH 261 (376)
T ss_pred CceEEEEec-CHHHHHHHHHHHHhcCCCCCHH-HHHHHHhch----hhHHHHHHHHHHHHHHHHHHHHcC
Confidence 478999999 9999999988776554432222 233334443 455677778888999999999887
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00036 Score=53.77 Aligned_cols=140 Identities=10% Similarity=0.135 Sum_probs=91.3
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--------------ccCCChHHHHHHHHhcCChHHHHH--HHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--------------FSSVSAPSQNLLVSMLSDTKFVQK--FININRERLRRLY 65 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--------------~~~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~ 65 (163)
+|.|| +|++++ .+++++.+..... +.+++...-.++..+|+.- .+ =++...++++++.
T Consensus 202 lGP~G--l~~v~v-r~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l---~~~gGl~~~~~r~~~~a 275 (365)
T PLN02452 202 VGPSG--VTIVII-RKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDL---LAQGGLKAMEKRNIRKA 275 (365)
T ss_pred cCCCC--eEEEEE-cHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHH---HHccCHHHHHHHHHHHH
Confidence 57777 688899 7877765432211 0234444444555554432 22 2688889999999
Q ss_pred HHHHHHhhhc-CC-cc-ccC--CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-c
Q 042816 66 VKFVAGLRQL-GI-EC-AKS--NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-L 139 (163)
Q Consensus 66 ~~l~~~l~~~-g~-~~-~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~ 139 (163)
+++++.|++. |+ .. ..+ .+.+.+-+.++.. ....+|.+.+.+ +|+...+|..-. .+ +|+|+= .
T Consensus 276 ~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~------~~~~~f~~~~~~-~g~~~~~G~r~~---gg-~R~s~yna 344 (365)
T PLN02452 276 DLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGS------ELEAEFVKEAAK-AGMVQLKGHRSV---GG-MRASIYNA 344 (365)
T ss_pred HHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCc------hhHHHHHHHHHH-CCCcccCCcccc---Cc-eEEECcCC
Confidence 9999999986 76 11 111 2455565666643 257788887765 999999987643 23 999984 4
Q ss_pred CChhHHHHHHHHHHHHHHH
Q 042816 140 LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 140 ~~~~~l~~~~~~l~~~~~~ 158 (163)
++.+.++..++-++++-++
T Consensus 345 ~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 345 MPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 5878877777777766554
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0006 Score=52.59 Aligned_cols=134 Identities=10% Similarity=0.113 Sum_probs=80.2
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc-
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE- 78 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~- 78 (163)
|.+|+|+||+++.++++++.+...... ..++++....+...++.- +..+ +...++...+.+.|+++ .+.
T Consensus 197 G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~tl---~~R~----~~~~~na~~la~~L~~~p~v~~ 269 (366)
T PRK07582 197 GHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTL---GLRF----ARQCANALAVAELLAGHPAVRG 269 (366)
T ss_pred CCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccccH---HHHH----HHHHHHHHHHHHHHHhCCCccE
Confidence 456799999998568888888877664 346677777777777653 3333 33446788888888887 432
Q ss_pred cc------cC-----------CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--------------
Q 042816 79 CA------KS-----------NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-------------- 127 (163)
Q Consensus 79 ~~------~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-------------- 127 (163)
+. .| .||++ .+++. +..+..+ +++..++... +..++.
T Consensus 270 v~yp~l~~~p~~~~~~~~~~~~gg~~-s~~~~---------~~~~~~~-~~~~l~~~~~-~~s~G~~~sl~~~~~~~~~~ 337 (366)
T PRK07582 270 VRYPGLPGDPAHEVAARQMRRFGGLV-SFELA---------DAAAAER-FVAASRLVVA-ATSFGGVHTSADRRARWGDA 337 (366)
T ss_pred EECCCCCCCccHHHHHhhCCCCcceE-EEEeC---------CHHHHHH-HHHhCCccee-cccCCCccchhhhHHHcCCC
Confidence 21 12 35543 33554 2233333 3444554432 222221
Q ss_pred CCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 128 IEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 128 ~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
..++.||+|++. |+.+..++.|.+++++
T Consensus 338 ~~~~liR~svGl---E~~~dli~dl~~al~~ 365 (366)
T PRK07582 338 VPEGFVRLSCGI---EDTDDLVADLERALDA 365 (366)
T ss_pred CCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 125689999997 4566777777777654
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00062 Score=52.41 Aligned_cols=97 Identities=7% Similarity=-0.024 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC-CccccC-C---ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQLG-IECAKS-N---GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI 128 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~-~---~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~ 128 (163)
++...+++++..+++.+.+.+.+ ++.... . ......+.+++.+ +..++.+.|.+ +||.+.++... .
T Consensus 259 ~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g~------~~~~v~~~L~~-~gI~i~~~~~~--l 329 (361)
T TIGR01366 259 LDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDDI------DAATVAKILRA-NGIVDTEPYRK--L 329 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCcc------CHHHHHHHHHH-CCCeeccCccc--c
Confidence 45566888888999999999885 554421 1 1111223334433 67888888865 79999886422 2
Q ss_pred CCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 129 EPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 129 ~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
+++.+|||+.. .+.++++..++.|.++++++
T Consensus 330 ~~~~vRis~~~~~t~~di~~l~~al~~~~~~~ 361 (361)
T TIGR01366 330 GRNQLRVAMFPAIDPDDVEALTECVDWVVERL 361 (361)
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence 35789999965 58889999999999887764
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00039 Score=54.95 Aligned_cols=140 Identities=9% Similarity=0.023 Sum_probs=82.5
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc-ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CCcc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR-FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----GIEC 79 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~ 79 (163)
.|+++|++++ ++++.+.+..... .++.+++.+.++.+.|+-- ++ ...+..+++-+++.+.|++. ++-.
T Consensus 294 ~G~p~gav~~-~~~i~~~~~~~~~~T~~g~p~~~aaa~a~L~~l---~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~ 366 (441)
T PRK05769 294 GGLPLGAVIG-RAELMFLPPGSHANTFGGNPVAAAAALATLEEL---EE---GLLENAQKLGEYLRKELKELKEKYEFIG 366 (441)
T ss_pred CCcccEEEEE-ehhhhhcCCCCCCCCCCcCHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 5789999999 8887653321111 2345777777777666532 21 33444555555555555443 2211
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
....-|.++-+.+...-......-...+.+.+++ +||.+.|. +.+.+|++... +++++++++++++.+++.+
T Consensus 367 ~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~Gil~~~~------~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~ 439 (441)
T PRK05769 367 DVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFK-RGLLLLGA------GKSAIRIIPPLIITEEEADIGLEILEEAIKE 439 (441)
T ss_pred eeecceEEEEEEeccCCccccHHHHHHHHHHHHh-CCcEEecC------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1122245555555321001111134567777776 89999762 14678988754 5889999999999998865
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00034 Score=53.89 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=71.7
Q ss_pred EEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCceeE
Q 042816 12 IYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFY 87 (163)
Q Consensus 12 ~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~ 87 (163)
++. .+++.+.+.....+ .+.+++...++..+++-- .+..+..++.+.+.++++.+.|...+. .....
T Consensus 221 vl~-~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l---~~~~~~~~~~l~~l~~~l~~~l~~~~~-----~~~~~ 291 (370)
T PRK05937 221 LLS-SSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFL---SQEGELARKQLFRLKEYFAQKFSSAAP-----GCVQP 291 (370)
T ss_pred EEc-CHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHH---HhCcHHHHHHHHHHHHHHHHhcCCCCC-----CCEEE
Confidence 455 56666665533221 234555544343333211 111133455666667777766654211 00111
Q ss_pred EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 88 CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
+.++.. +...+.+.|.+ +||.+... ..+..+++|+++.. .++++++.+++.|.+++++..+
T Consensus 292 --i~~~~~-------~~~~~~~~L~~-~gi~v~~~---~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~~ 353 (370)
T PRK05937 292 --IFLPGI-------SEQELYSKLVE-TGIRVGVV---CFPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQK 353 (370)
T ss_pred --EEeCCh-------hHHHHHHHHHH-CCeeEEee---CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 233321 45677777755 89988642 22235689999963 3889999999999999877644
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00066 Score=53.25 Aligned_cols=98 Identities=8% Similarity=0.026 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCccccC-CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCC-CC--CCC-C
Q 042816 55 NINRERLRRLYVKFVAGLRQLGIECAKS-NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGS-SC--HCI-E 129 (163)
Q Consensus 55 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~-~f--~~~-~ 129 (163)
.+.++.+.++.+++.+.|++.|+.+..+ ..+..+++.+...- .+...+.+.|. +.||.+.+.. .. ..+ .
T Consensus 285 ~~~~~~l~~~a~~l~~~L~~~G~~~~~~~~~t~i~~v~~~~~~-----~~~~~~~~~L~-~~GI~v~~~~~p~~~~~p~~ 358 (416)
T PRK13034 285 KTYAKQVIANAQALAEVLKERGYDLVSGGTDNHLLLVDLRPKG-----LSGKDAEQALE-RAGITVNKNTVPGDTESPFV 358 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEeccCCCCCcEEEEEcCCCC-----CCHHHHHHHHH-hCCcEEeccCCCCCCcCCCC
Confidence 3557888899999999998888887642 22334555654311 13455556665 4899997521 11 111 1
Q ss_pred CceEEEEEec-----CChhHHHHHHHHHHHHHHH
Q 042816 130 PGWFSFSFTL-----LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 130 ~~~iRi~~~~-----~~~~~l~~~~~~l~~~~~~ 158 (163)
+..+|+++.. +++++++.+.+.|.+++..
T Consensus 359 ~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 359 TSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred CCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 5689999754 3578999999999887653
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0008 Score=53.35 Aligned_cols=150 Identities=9% Similarity=0.043 Sum_probs=81.0
Q ss_pred eeEEEEEecCHHHHHHHHHhh--------cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 7 FRISVIYSYNNSVLAAAKKLA--------RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~--------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+-+|.+++ ++++.+.+..-. ..++.++++-.++.+.|+.-+. +...++.++.-...++.+.+.++++++-
T Consensus 289 ~Pi~av~~-~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~-~~~~~~~~~~g~~l~~~l~~~~~~~~~v 366 (451)
T PRK07678 289 LPLSATAV-KKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMEN-ENLIERSAQLGELLLEQLKEELGEHPLV 366 (451)
T ss_pred cceeEEEE-cHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 57899999 899988876311 1235566666655555542110 1122222222222223333334444322
Q ss_pred c-ccCCceeEEEeecCCcc--cCC-ChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHH
Q 042816 79 C-AKSNGGFYCWADMSGLI--SSY-SEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIR 153 (163)
Q Consensus 79 ~-~~~~~g~~~~~~~~~~~--~~~-~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~ 153 (163)
. .... |.++-+++...- ..+ +......++..+++ +||.+.+.........+.+|++... +++++++++++++.
T Consensus 367 ~~vrg~-Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~-~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~ 444 (451)
T PRK07678 367 GDIRGK-GLLVGIELVNDKETKEPADNDKVASVVAACKE-KGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLK 444 (451)
T ss_pred EEEEee-ceEEEEEEecCCcccCcCchHHHHHHHHHHHH-CCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHH
Confidence 2 2233 444445553210 000 11134577777776 8999976322111224679998653 58899999999999
Q ss_pred HHHHHhh
Q 042816 154 RISQTCK 160 (163)
Q Consensus 154 ~~~~~~~ 160 (163)
+++.+++
T Consensus 445 ~~l~~~~ 451 (451)
T PRK07678 445 TALERIK 451 (451)
T ss_pred HHHHhcC
Confidence 9998764
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0016 Score=50.57 Aligned_cols=139 Identities=16% Similarity=0.141 Sum_probs=83.9
Q ss_pred CCCCceeE-EEEEecCHHHHHHHHHhhc-c--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 2 LSLPGFRI-SVIYSYNNSVLAAAKKLAR-F--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 2 ~~~~G~Ri-G~~i~~~~~~~~~~~~~~~-~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
++.+|.|+ ||+++ ++++++.+.+... . ...+++.+.++...|+.- ....+...++...+.+.|+++ +
T Consensus 209 l~g~g~~~gG~v~~-~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~tl-------~~r~~~~~~~a~~la~~L~~~p~ 280 (386)
T PRK06767 209 IGGHGDVVAGVTIC-KTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKTL-------AVRMDRHCDNAEKIVSFLKNHDA 280 (386)
T ss_pred ecCCCCceeEEEEe-ChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcH-------HHHHHHHHHHHHHHHHHHHcCCC
Confidence 56788885 99999 8887777644332 2 234656555555555542 334456678889999999998 7
Q ss_pred Ccc-cc-----------CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC------------C-----
Q 042816 77 IEC-AK-----------SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH------------C----- 127 (163)
Q Consensus 77 ~~~-~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~------------~----- 127 (163)
++. .. ..||+.. +++... ..+...|.+.|.. .++.+.=|.... .
T Consensus 281 v~~v~~p~~~~~~~~~~~~gg~vs-f~l~~~-----~~~~~~f~~~l~~-~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~ 353 (386)
T PRK06767 281 VEGVWYPEGELASRQMKRGGGVIS-FSIKGG-----KEETQAFINDLHF-ITIAVSLGDTETLIQHPATMTHAAIPAELR 353 (386)
T ss_pred ccEEECCCcHHHHHhCCCCCceEE-EEEcCC-----HHHHHHHHHhCCc-cEEecCCCCcCccccCCCccccccCCHHHH
Confidence 653 21 2345443 355421 1356778887743 555543331110 0
Q ss_pred ----CCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 128 ----IEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 128 ----~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
..++.+|+|++- |+.+..++-|.+++.+
T Consensus 354 ~~~gi~~~l~R~svGl---E~~~dl~~dl~~al~~ 385 (386)
T PRK06767 354 QEMGIYDNLIRLSVGL---ESWEDIVSDLEQALKK 385 (386)
T ss_pred HhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 125789999997 5666777777776653
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0024 Score=49.46 Aligned_cols=101 Identities=9% Similarity=-0.053 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC-CccccC----CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQLG-IECAKS----NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI 128 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~ 128 (163)
++...++.++..+++.+.|++.+ +++..+ .++..+.+.++... .+ ...++...|++ +|+.+..|.. ..
T Consensus 270 ~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~--~~--~~~~~~~~l~~-~~i~v~~g~~-~~- 342 (378)
T PRK03080 270 LDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQ--AA--VDAAAVAKLLR-ENGAVDIEPY-RD- 342 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCch--HH--HHHHHHHHHHH-cCCeeccccc-cC-
Confidence 46677888888889999998884 555421 23223444555400 00 23456667776 6888877642 21
Q ss_pred CCceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 129 EPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 129 ~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
..+.+|+|+.. .+.++++..++.|.+++++++.
T Consensus 343 ~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~~ 376 (378)
T PRK03080 343 APNGLRIWCGPTVEPADVEALTPWLDWAFERLKA 376 (378)
T ss_pred CCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 35789999864 4889999999999999887764
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0022 Score=49.94 Aligned_cols=138 Identities=12% Similarity=0.026 Sum_probs=82.0
Q ss_pred CCCCc-eeEEEEEecCHHHHHHHHHhhcc---cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 2 LSLPG-FRISVIYSYNNSVLAAAKKLARF---SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 2 ~~~~G-~RiG~~i~~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
++.+| ++.|+++. ++++++.++..... ...+++.+..+...|+.- .. ..+...++.+.+.+.|+++ +
T Consensus 210 l~g~~~~~gG~i~~-~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl---~~----r~~~~~~~a~~la~~L~~~p~ 281 (389)
T PRK05968 210 LGGHSDTVAGVVAG-SKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTL---PL----RMKAHEASALEIARRLKAHPV 281 (389)
T ss_pred ccCCCCeEEEEEEE-CHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCcH---HH----HHHHHHHHHHHHHHHHHhCCC
Confidence 34433 68999998 89998888765442 346666666666666653 22 2333344577777888887 6
Q ss_pred Ccccc-C------------CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC--------------C--
Q 042816 77 IECAK-S------------NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH--------------C-- 127 (163)
Q Consensus 77 ~~~~~-~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~--------------~-- 127 (163)
++... | -||+ +.+++... .+..+|++.|.. .++.+.=|.... .
T Consensus 282 v~~v~~p~l~~~~~~~~~g~g~~-~sf~~~~~------~~~~~f~~~L~~-~~~~~s~G~~~slv~p~~~~~~~~~~~~~ 353 (389)
T PRK05968 282 VERVCHPALANHPPAGLSGTSGL-FSFIFREG------IDVRAFADALKL-FRLGVSWGGHESLVVPAEVVLQQKAQPNS 353 (389)
T ss_pred ccEEECCCCCCChHHhCCCCceE-EEEEECCH------HHHHHHHHhCCc-cEEecCCCCCCceeeeCcccccccCCHHH
Confidence 54332 3 1233 33455432 256788887743 565544443322 0
Q ss_pred -----CCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 128 -----IEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 128 -----~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
..++.+|+|++- |+.+..++-|.+++++
T Consensus 354 ~~~~gi~~~liR~SvGl---E~~~dl~~dl~~al~~ 386 (389)
T PRK05968 354 AARFGVSPRSVRLHVGL---EGTEALWADLEQALAA 386 (389)
T ss_pred HHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHH
Confidence 125799999997 5566666666666654
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00077 Score=53.45 Aligned_cols=146 Identities=13% Similarity=0.142 Sum_probs=84.7
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhc----cc---CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLAR----FS---SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~----~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
++|-+.|++.+ ++++.+.+..... +. +++...-.++...++.-. ....+..++++.++.+++.+.|++.|
T Consensus 247 l~GP~Gg~l~~-~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~--~~~~~~~~~~i~~l~~~l~~~L~~~g 323 (452)
T PTZ00094 247 LRGPRSGLIFY-RKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQ--SPEWKEYAKQVLKNAKALAAALEKRG 323 (452)
T ss_pred CCCCCceEEEE-ecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHh--ChhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45566688888 6655444333221 11 233333333444443210 12345667788888999999998777
Q ss_pred CccccCCc-eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc-CCCCCCC--CCCceEEEEEecC-----ChhHHHH
Q 042816 77 IECAKSNG-GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT-PGSSCHC--IEPGWFSFSFTLL-----TEKDIHV 147 (163)
Q Consensus 77 ~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~-pg~~f~~--~~~~~iRi~~~~~-----~~~~l~~ 147 (163)
+++..+.. .-...+.+... + .+...+...| +++||.+. ++..... ..++.+|+++... ++++++.
T Consensus 324 ~~v~~~~~~~~~~~v~~~~~----~-~~~~~~~~~L-~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~ 397 (452)
T PTZ00094 324 YDLVTGGTDNHLVLVDLRPF----G-ITGSKMEKLL-DAVNISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKF 397 (452)
T ss_pred cEEecCCCCCceEeecCCcC----C-CCHHHHHHHH-HHCCcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHH
Confidence 76654211 22244444321 0 1456677665 55899994 4444321 1268999998543 3688999
Q ss_pred HHHHHHHHHHH
Q 042816 148 VMERIRRISQT 158 (163)
Q Consensus 148 ~~~~l~~~~~~ 158 (163)
.++.|.+++..
T Consensus 398 l~~~l~~~~~~ 408 (452)
T PTZ00094 398 VADFLDRAVKL 408 (452)
T ss_pred HHHHHHHHHHH
Confidence 99999888764
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00059 Score=52.43 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-CCccccCC----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--
Q 042816 55 NINRERLRRLYVKFVAGLRQL-GIECAKSN----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-- 127 (163)
Q Consensus 55 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-- 127 (163)
+..+++.++..+.+.+.|.+. |+++..+. .+..+++.++.. +..++.+.|.+++||.+.+|..+..
T Consensus 269 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~L~~~~gi~v~~g~~~~~~~ 341 (376)
T TIGR01977 269 ANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI-------DSEEVADILDEKFDIATRTGLHCAPLA 341 (376)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC-------CHHHHHHHHhccCCEEEEcccccchHH
Confidence 566777788888888888876 66665431 233566666642 6678888887745999999876542
Q ss_pred ------CCCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 128 ------IEPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 128 ------~~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
...+.+|+++.. .+.++++.+++.|++
T Consensus 342 ~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 342 HKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred HHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 235799999965 477888888888764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0031 Score=50.16 Aligned_cols=144 Identities=6% Similarity=-0.023 Sum_probs=77.0
Q ss_pred ceeEEEEEecCHHHHHHHHHh-hcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCccc
Q 042816 6 GFRISVIYSYNNSVLAAAKKL-ARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ----LGIECA 80 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~-~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~ 80 (163)
|+-+|.+++ ++++.+..... ...++.+++.-.++.+.|+--+- ++.+++.+ ++-+++.+.|++ +++-..
T Consensus 296 G~pi~av~~-~~~i~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~-~~l~~~~~----~~g~~l~~~L~~l~~~~~~~~~ 369 (457)
T PRK05639 296 GMGLSGVIG-RKELMDLTSGSALLTPAANPVISAAAEATLEIIEE-ENLLKNAL----KVGEFIKKRLLEMKESFEVIGD 369 (457)
T ss_pred CCcceeEEe-hHHHHhhcCCCcccCCCcCHHHHHHHHHHHHHHHH-ccHHHHHH----HHHHHHHHHHHHHHHhCCCEEe
Confidence 677899999 88888732111 11134555554444444432100 12222222 233333333333 332221
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
...-|.++-+++......+.......+.+.+++ +|+.+.+. + ...+.+|+.... ++++++++++++|.+++.+.
T Consensus 370 VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~---g-~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~ 444 (457)
T PRK05639 370 VRGKGLMIGVEIVKENGKPDPELTGKICWRAFE-LGLILPSY---G-MFGNVIRITPPLVITKEIAEKGLEIMERAIKDA 444 (457)
T ss_pred eccceeEEEEEEecCCCCCCHHHHHHHHHHHHh-CCeEEeec---C-CCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence 223344555555221101111234577777776 89999764 1 114789998864 58899999999999998765
Q ss_pred h
Q 042816 160 K 160 (163)
Q Consensus 160 ~ 160 (163)
.
T Consensus 445 ~ 445 (457)
T PRK05639 445 L 445 (457)
T ss_pred H
Confidence 4
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0024 Score=50.84 Aligned_cols=144 Identities=12% Similarity=0.078 Sum_probs=83.5
Q ss_pred Cce-eEEEEEecCHHHHHHHHHhhc------ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 5 PGF-RISVIYSYNNSVLAAAKKLAR------FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 5 ~G~-RiG~~i~~~~~~~~~~~~~~~------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
.|+ ++|++++ ++++.+.+..... .++.+++.-.++.+.|+.- .+ +...+.+.++.+++.+.|+++ .
T Consensus 294 ~G~~pigav~~-~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l---~~--~~~~~~~~~~g~~l~~~L~~l~~ 367 (460)
T PRK06541 294 SGYSPLGAMIA-SDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIF---ER--EGLLDHVRDNEPAFRATLEKLLD 367 (460)
T ss_pred CCccceeEEEE-cHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHhhc
Confidence 465 9999999 8999888764321 1234555555444444321 11 123455556666666666554 2
Q ss_pred --C-ccccCCceeEEEeecCCc--ccCC--C-hh---hHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhH
Q 042816 77 --I-ECAKSNGGFYCWADMSGL--ISSY--S-EK---GELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKD 144 (163)
Q Consensus 77 --~-~~~~~~~g~~~~~~~~~~--~~~~--~-~~---~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~ 144 (163)
+ ......|.+ +-+++... .+.+ . .. -...+...|++ +||.+.|.. . +.+.+||+... +++++
T Consensus 368 ~~~v~~vrg~Gl~-~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~-~---g~~~lrl~Ppl~~t~~~ 441 (460)
T PRK06541 368 LPIVGDVRGDGYF-YGIELVKDKATKETFTDDESERLLRGFLSPALFE-AGLYCRADD-R---GDPVVQLAPPLISGQEE 441 (460)
T ss_pred CCCeEEEEecceE-EEEEEecCcccccCCcchhhhhhHHHHHHHHHHh-CCeEEEecC-C---CCCEEEEECCCCCCHHH
Confidence 2 223445544 44455321 0000 0 00 01256677776 899998721 1 24789999873 48999
Q ss_pred HHHHHHHHHHHHHHhh
Q 042816 145 IHVVMERIRRISQTCK 160 (163)
Q Consensus 145 l~~~~~~l~~~~~~~~ 160 (163)
+++++++|.+++.+..
T Consensus 442 id~~~~~l~~~l~~~~ 457 (460)
T PRK06541 442 FDEIEQILRSVLTEAW 457 (460)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987654
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0014 Score=50.39 Aligned_cols=121 Identities=19% Similarity=0.228 Sum_probs=84.0
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCccccC---CceeEEEeecCCcccCCChhhHH
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL--GIECAKS---NGGFYCWADMSGLISSYSEKGEL 105 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~ 105 (163)
+.|.+.-.++..+++.. .+.++.....+...++.+.+.|.+. .+.+... .-...+.+.+|.. +.+
T Consensus 238 Tenv~~Ivg~~~A~~~a---~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv-------~gE 307 (386)
T COG1104 238 TENVPGIVGFGKAAEIA---VEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGV-------EGE 307 (386)
T ss_pred CccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCC-------cHH
Confidence 35666666666666654 4556777777888888899988875 3333322 2223344555542 556
Q ss_pred HHHHHHHHhcCeEEcCCCCCCCC-----------------CCceEEEEEecC-ChhHHHHHHHHHHHHHHHhhhc
Q 042816 106 ELWDKLLNVAKVNVTPGSSCHCI-----------------EPGWFSFSFTLL-TEKDIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 106 ~~~~~l~~~~gi~v~pg~~f~~~-----------------~~~~iRi~~~~~-~~~~l~~~~~~l~~~~~~~~~~ 162 (163)
.+...| +.+||.+..|+.+... ..+.+|||++.. ++++++.+++.+.+++++++..
T Consensus 308 ~ll~~L-~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~~ 381 (386)
T COG1104 308 SLLLAL-DLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLREL 381 (386)
T ss_pred HHHHhc-cccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 666655 5589999999887543 147999999863 7789999999999999998763
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0023 Score=49.33 Aligned_cols=136 Identities=6% Similarity=0.020 Sum_probs=87.4
Q ss_pred eEEEEEecCHHHHHHHHHh-----------hc---ccCCChHHHHHHHHhcCChHHHHH--HHHHHHHHHHHHHHHHHHH
Q 042816 8 RISVIYSYNNSVLAAAKKL-----------AR---FSSVSAPSQNLLVSMLSDTKFVQK--FININRERLRRLYVKFVAG 71 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~-----------~~---~~~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~ 71 (163)
.+|++++ ++++.+.+... .. +.+++...-.++.++|+.- .+ -++...+++++..+++.+.
T Consensus 202 Glg~l~~-s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i---~~~gG~e~i~~r~~~l~~~l~~~ 277 (360)
T PRK05355 202 GLTIVIV-REDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWL---KEQGGVAAMEKRNQEKAALLYDA 277 (360)
T ss_pred ceEEEEE-CHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHH---HHccCHHHHHHHHHHHHHHHHHH
Confidence 4678888 77776654331 11 2345555555555555432 22 2678888999999999999
Q ss_pred hhhcCCc-c-cc--CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHH
Q 042816 72 LRQLGIE-C-AK--SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIH 146 (163)
Q Consensus 72 l~~~g~~-~-~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~ 146 (163)
|++.++. . .. ...+.-+.+.+|..+ +..++...+.+ .|+.+.+|.. ..+.+|+|+.. .+.++++
T Consensus 278 l~~~~~~~~~~~~~~rs~~v~sf~~~~~~------~~~~~~~~~~~-~Gi~~~~~~~----~~g~vRiS~~~~nt~eei~ 346 (360)
T PRK05355 278 IDSSDFYRNPVAPEDRSRMNVPFTLADEE------LDKKFLAEAKA-AGLVGLKGHR----SVGGMRASIYNAMPLEGVQ 346 (360)
T ss_pred HHhCCCcccCCChhhcCCcEEEEEcCChH------HHHHHHHHHHH-CCCcccCCCC----ccCcEEEECCCCCCHHHHH
Confidence 9998642 2 11 123233445566532 34566666665 8999877763 24789999865 4689999
Q ss_pred HHHHHHHHHHHH
Q 042816 147 VVMERIRRISQT 158 (163)
Q Consensus 147 ~~~~~l~~~~~~ 158 (163)
..++.|++++..
T Consensus 347 ~l~~~l~~~~~~ 358 (360)
T PRK05355 347 ALVDFMKEFERR 358 (360)
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0031 Score=48.67 Aligned_cols=66 Identities=15% Similarity=0.084 Sum_probs=45.5
Q ss_pred CCCCc-eeEEEEEecCH-HHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLPG-FRISVIYSYNN-SVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~G-~RiG~~i~~~~-~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
+|.+| ++.||+++ ++ ++++.+...... .+++++.+.++...++.- ....+...++...+.+.|+++
T Consensus 188 l~g~~~~~gG~v~~-~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl-------~~r~~~~~~na~~la~~L~~~ 257 (369)
T cd00614 188 IGGHSDVIAGVVVG-SGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTL-------PLRMERHSENALKVAEFLEKH 257 (369)
T ss_pred ccCCCCceEEEEEe-CcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCH-------HHHHHHHHHHHHHHHHHHHcC
Confidence 34444 89999999 55 888888877653 456666666666666542 233445566888888889887
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0041 Score=49.49 Aligned_cols=137 Identities=11% Similarity=0.068 Sum_probs=81.1
Q ss_pred eeEEEEEecCHHHHHHHHHhh-cc---cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----C--
Q 042816 7 FRISVIYSYNNSVLAAAKKLA-RF---SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----G-- 76 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~-~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g-- 76 (163)
+-+|.+++ .+++.+.+.... .+ ++.++++-.++.+.|+.- ++ +...+..+++-+++.+.|+++ .
T Consensus 307 ~Pigav~~-~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i---~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~ 380 (459)
T PRK11522 307 MPIGATIA-TEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVL---LE--QNLPAQAEQKGDYLLDGFRQLAREYPDL 380 (459)
T ss_pred ccceeEEE-cHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHH---hc--chHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 57899999 888888764221 11 234666655554444321 00 112233333444444444433 1
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
+.-... -|.++-+++... .....+++.|++ +||.+.+.. .+.+.+|++.+. +++++++++++++.++
T Consensus 381 i~~VrG-~Gl~~giel~~~------~~~~~i~~~l~~-~Gvl~~~~~----~~~~~lr~~Ppl~~t~~~id~~l~~l~~~ 448 (459)
T PRK11522 381 VQEARG-KGMLMAIEFVDN------EIGYNFASEMFR-QRVLVAGTL----NNAKTIRIEPPLTLTIEQCEQVLKAARKA 448 (459)
T ss_pred eeeEEe-ceeEEEEEecCc------hHHHHHHHHHHH-CCeEEEecC----CCCCEEEEECCccCCHHHHHHHHHHHHHH
Confidence 111222 356666777542 135678888877 899997632 125789998864 5889999999999999
Q ss_pred HHHhhh
Q 042816 156 SQTCKS 161 (163)
Q Consensus 156 ~~~~~~ 161 (163)
+.++.+
T Consensus 449 l~~~~~ 454 (459)
T PRK11522 449 LAAMRV 454 (459)
T ss_pred HHHHHH
Confidence 887654
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0073 Score=46.74 Aligned_cols=120 Identities=15% Similarity=0.121 Sum_probs=81.0
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC---ceeEEEeecCCcccCCChhhHHHH
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSN---GGFYCWADMSGLISSYSEKGELEL 107 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~ 107 (163)
+++...-.++.++|+.-. .+=++..-+.++++.+++.+.+...|++..... .....-+.+|+.+ ++.+.
T Consensus 242 Tppv~~i~aL~~al~~i~--~EGle~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~~P~g~------~~~~~ 313 (383)
T COG0075 242 TPPVNLIYALREALDLIL--EEGLEARIARHRRLAEALRAGLEALGLELFADPERRSPTVTAIKVPEGV------DDKKV 313 (383)
T ss_pred CCCHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHcCCccccCcccCCCceEEEECCCCC------CcHHH
Confidence 344433445555554321 122577788889999999999999998776511 2223345667654 34444
Q ss_pred HHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHHHHHhh
Q 042816 108 WDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 108 ~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
...+++++|+.+.+|..-. ....+||+.- ..+..++..++..|..++.++.
T Consensus 314 ~~~~~~~~g~~i~gg~~~l--~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g 365 (383)
T COG0075 314 RRALLKEYGVEIAGGQGPL--KGKIFRIGHMGNVRPEDVLAALAALEAALRELG 365 (383)
T ss_pred HHHHHHhCCEEeccccccc--CccEEEEecCccCCHHHHHHHHHHHHHHHHHcC
Confidence 4467787899999875433 3579999984 4588899999999999998764
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0017 Score=50.59 Aligned_cols=96 Identities=20% Similarity=0.303 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-CCcccc-----CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQL-GIECAK-----SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC 127 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~ 127 (163)
.....+..++..+++.+.|+++ ++.+.. ....+++|+.+.. ..++...| .++.|.+|..|..
T Consensus 263 ~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l---~~~~i~~g~~~~~ 330 (404)
T PRK14012 263 MATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVE---------GESLIMAL---KDLAVSSGSACTS 330 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcC---------HHHHHHhC---CCeEEEchhhhCC
Confidence 4456677777788888888776 544431 1234455655432 24455544 3677777765532
Q ss_pred C-----------------CCceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 128 I-----------------EPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 128 ~-----------------~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
. ..+.+|+++.. .++++++..++.|+++++.++.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~~ 382 (404)
T PRK14012 331 ASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLRE 382 (404)
T ss_pred CCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1 14789999975 4888999999999998887754
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0044 Score=47.70 Aligned_cols=132 Identities=21% Similarity=0.250 Sum_probs=80.0
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhccc-----------------------CCChHHHHHHHHhcCChHHHHHHHHHHHH
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARFS-----------------------SVSAPSQNLLVSMLSDTKFVQKFININRE 59 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~~-----------------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~ 59 (163)
|-+| +|++.+ ++++++.+......+ +++.+...++...++.-. +.-+++.++
T Consensus 204 gp~G--~g~l~v-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~--~~g~~~i~~ 278 (371)
T PF00266_consen 204 GPPG--LGFLYV-RPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLE--EIGIERIRE 278 (371)
T ss_dssp SSST--EEEEEE-EHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCCc--hhhhee-hhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhh--ccccccchh
Confidence 4455 699999 888888874322211 234443444444443221 334577788
Q ss_pred HHHHHHHHHHHHhhhc-CCcccc----CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC------C
Q 042816 60 RLRRLYVKFVAGLRQL-GIECAK----SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------I 128 (163)
Q Consensus 60 ~~~~~~~~l~~~l~~~-g~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------~ 128 (163)
+..+..+++.+.|.++ ++.+.. +..+-.+.+.++.. +..++.+.|.+ .||.+..|..... .
T Consensus 279 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~L~~-~~I~~~~G~~~~~~~~~~~~ 350 (371)
T PF00266_consen 279 RIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGS-------DADDVVKYLEE-RGIAVSTGSACAGPSLDILG 350 (371)
T ss_dssp HHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTS-------SHHHHHHHHHH-HTEEEEESTTTCHHHHHHHH
T ss_pred hhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCC-------CHHHHHHHHhh-cCEEEeccCcccHHHHHHhC
Confidence 8888899999999888 555532 22233344455442 67888888877 5999999776541 0
Q ss_pred CCceEEEEEecC-ChhHHHH
Q 042816 129 EPGWFSFSFTLL-TEKDIHV 147 (163)
Q Consensus 129 ~~~~iRi~~~~~-~~~~l~~ 147 (163)
-.+.+|+|+... +.+++++
T Consensus 351 ~~~~iRvS~~~~nt~~dv~~ 370 (371)
T PF00266_consen 351 MGGVIRVSLHYYNTEEDVDR 370 (371)
T ss_dssp TTTEEEEE-GTTSSHHHHHH
T ss_pred CCCEEEEeccCCCCHHHHhh
Confidence 148999998753 6666654
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.003 Score=49.96 Aligned_cols=144 Identities=18% Similarity=0.213 Sum_probs=93.5
Q ss_pred CCCCceeEEEEE-ecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----C
Q 042816 2 LSLPGFRISVIY-SYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----G 76 (163)
Q Consensus 2 ~~~~G~RiG~~i-~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g 76 (163)
+.+||. |+++ +.|+++++.+.........+++.|.+...++..+ .+.++++.+.+.++++++.+.|+++ |
T Consensus 275 l~~pg~--Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~~G---~~g~~~li~~~~~~a~~l~~~L~~l~~~~~ 349 (444)
T TIGR03531 275 FMVPVG--GAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLSLG---SKGYLELLKERKEMYKYLKELLQKLAERHG 349 (444)
T ss_pred CCCCCC--EEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 567777 6655 5588898888765443445678888888888776 5677888889999999999888775 5
Q ss_pred CccccC-CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeE----EcCCC-------CC---CCCC----CceEEEEE
Q 042816 77 IECAKS-NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVN----VTPGS-------SC---HCIE----PGWFSFSF 137 (163)
Q Consensus 77 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~----v~pg~-------~f---~~~~----~~~iRi~~ 137 (163)
..+... +..+.+-+.+.... + .+...+...|.. .+|. |.||. .| +... -.|+-++.
T Consensus 350 ~~~~~~~~n~is~~~~~~~~~---~-~~~~~~g~~l~~-~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 424 (444)
T TIGR03531 350 ERLLDTPENPISSAMTLSTLK---G-KDPTMLGSMLYS-RRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAA 424 (444)
T ss_pred cEeecCCCCceeEEEeccccc---c-cCHHHHHHHHHh-CCCCCceeecCCCceEECCEEeecccccccCCCchhHHHHH
Confidence 555543 44444555554321 0 256777777754 5553 45666 22 2111 12554443
Q ss_pred ec-CChhHHHHHHHHHHHH
Q 042816 138 TL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 138 ~~-~~~~~l~~~~~~l~~~ 155 (163)
+- .+.++++.++++|.++
T Consensus 425 ~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 425 AIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred HhCCcHHHHHHHHHHHhhc
Confidence 21 4779999999999875
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0035 Score=50.06 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCccccCC-ceeEEEeec-CCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC---CC
Q 042816 55 NINRERLRRLYVKFVAGLRQLGIECAKSN-GGFYCWADM-SGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC---IE 129 (163)
Q Consensus 55 ~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~---~~ 129 (163)
+..++...++.+++.+.|.+.|+++..+. .+-.+++++ +..+ +..++.+.|. ..||.+..+.-.+. ..
T Consensus 313 ~~~~~~~~~na~~L~~~L~~~G~~l~~~~t~~hi~lv~~~~~gi------~~~~~~~~L~-~~~I~~nk~~~p~~~~~~~ 385 (475)
T PLN03226 313 KAYQKQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGL------TGSRVEKVLD-LAHITLNKNAVPGDSSALV 385 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEcCCCCCCEEEEEccCCCC------CHHHHHHHHH-HCCCEECCCCCCCCcccCC
Confidence 45678888899999999988888877532 234566787 4333 5667777665 59999987642221 12
Q ss_pred CceEEEEEec-----CChhHHHHHHHHHHHHHHH
Q 042816 130 PGWFSFSFTL-----LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 130 ~~~iRi~~~~-----~~~~~l~~~~~~l~~~~~~ 158 (163)
+..+|++... +.++++++..+.|.+++..
T Consensus 386 ~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 386 PGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred CCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 5668885432 4668888888888887763
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.012 Score=45.61 Aligned_cols=99 Identities=12% Similarity=0.020 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC-CccccC----CceeEEEeecCCc-cc----CCChhhHHHHHHHHHHhcCeEEcCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQLG-IECAKS----NGGFYCWADMSGL-IS----SYSEKGELELWDKLLNVAKVNVTPGS 123 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~----~~g~~~~~~~~~~-~~----~~~~~~~~~~~~~l~~~~gi~v~pg~ 123 (163)
++...++++++.+++++.+++.| +..... .+.....+.++.. +. .++..-..++.+.|.+ +||.+.+|.
T Consensus 261 le~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~i~~G~ 339 (374)
T TIGR01365 261 LKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEK-EGVAYDIGS 339 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHH-CCEEEeccc
Confidence 67888899999999999999997 666542 1232333455332 10 0000004677777765 799999876
Q ss_pred CCCCCCCceEEEEEe-cCChhHHHHHHHHHHHH
Q 042816 124 SCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRI 155 (163)
Q Consensus 124 ~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~ 155 (163)
.-. .+..+||+.. .++.++++..++.|.=+
T Consensus 340 ~~~--~~~~fRIg~~G~i~~~di~~l~~~l~~~ 370 (374)
T TIGR01365 340 YRD--APSGLRIWCGATVEKSDLECLCPWLDWA 370 (374)
T ss_pred ccc--CCCceEEecCCcCCHHHHHHHHHHHHHH
Confidence 432 2578999884 46888888888877643
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0061 Score=47.15 Aligned_cols=137 Identities=16% Similarity=0.199 Sum_probs=85.8
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----C-C
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----G-I 77 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g-~ 77 (163)
.|+-+|.+++ .+.+.+.+.--.. .++-|+++-+++.+.++--.. ++.+++.++ +-+++.+.|+++ + +
T Consensus 257 GG~PigA~la-~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~-e~ll~~v~~----~g~~~~~~L~~l~~~~~~v 330 (404)
T COG4992 257 GGFPIGAMLA-TEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLE-EGLLENVRE----KGEYLLQRLRELKRRYPLV 330 (404)
T ss_pred CCccceeeEE-chhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcc-hhHHHHHHH----HHHHHHHHHHHHhhcCCce
Confidence 3688999999 6555554332222 256788887766655543111 233334333 444455555443 2 3
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
+-.+. -|+.+=+++.... ...++++.+.+ +|+++.+.. ++-+|+.-.. ++++++++++++|.+++
T Consensus 331 ~~vRG-~GLmiGiel~~~~------~a~~~~~~~~~-~gvL~~~a~------~~ViR~~PpL~i~~eei~~~~~~l~~~l 396 (404)
T COG4992 331 KEVRG-RGLMIGIELKEPY------RARDIVRALRE-EGVLVLPAG------PNVIRFLPPLVITEEEIDEALDALERAL 396 (404)
T ss_pred eeeec-ceeEEEEEecCcc------cHHHHHHHHHH-CCeEEecCC------CCeEEecCCccCCHHHHHHHHHHHHHHH
Confidence 33333 3566667776521 36889988876 899998632 5688988754 58999999999999999
Q ss_pred HHhhh
Q 042816 157 QTCKS 161 (163)
Q Consensus 157 ~~~~~ 161 (163)
+....
T Consensus 397 ~~~~~ 401 (404)
T COG4992 397 AAASA 401 (404)
T ss_pred HHhhh
Confidence 86543
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00023 Score=54.32 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=64.9
Q ss_pred CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC-cee--EEEeecCCcccCCChhhHHHHH
Q 042816 32 VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSN-GGF--YCWADMSGLISSYSEKGELELW 108 (163)
Q Consensus 32 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~g~--~~~~~~~~~~~~~~~~~~~~~~ 108 (163)
++.....++...++.- ....+...++++++.+++.+.|++.|+++..+. ... .+-+.++. .+..++.
T Consensus 240 ~~~~~~~al~~al~~~---~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~-------~~~~~v~ 309 (353)
T TIGR03235 240 LPVHLIVGMGEAAEIA---RRNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFSIDG-------VNSEALI 309 (353)
T ss_pred CChHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEEEEeCC-------cCHHHHH
Confidence 4444444444444421 334567788999999999999988887775332 211 22233343 1567777
Q ss_pred HHHHHhcCeEEcCCCCCCCCC--CceEEEEEecCChhHHHH
Q 042816 109 DKLLNVAKVNVTPGSSCHCIE--PGWFSFSFTLLTEKDIHV 147 (163)
Q Consensus 109 ~~l~~~~gi~v~pg~~f~~~~--~~~iRi~~~~~~~~~l~~ 147 (163)
+.| + .+|.|.+|..|.... +.++|.+++. ++++...
T Consensus 310 ~~L-~-~~i~v~~g~~~~~~~~~~~~~l~~~g~-~~~~~~~ 347 (353)
T TIGR03235 310 VNL-R-ADAAVSTGSACSSSKYEPSHVLQAMGL-DTDRARG 347 (353)
T ss_pred HHH-h-CCeEEEchhhcCCCCCCCCHHHHHcCC-CHHHhCc
Confidence 766 5 489999999986533 4578888886 6555443
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0011 Score=51.69 Aligned_cols=133 Identities=16% Similarity=0.151 Sum_probs=86.9
Q ss_pred EEEEecCHHHHHHHHHhhcc----cC-CChHHHHHHHHh---cC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 10 SVIYSYNNSVLAAAKKLARF----SS-VSAPSQNLLVSM---LS-DTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 10 G~~i~~~~~~~~~~~~~~~~----~~-~s~~~q~~~~~~---l~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
||+.+ ++++++.++..... .+ +++++|+....+ .. ++ ...-++..+.+.++..++...+++.|+-+.
T Consensus 354 Gyiag-sk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dg---t~~g~~k~~~l~~ns~yfr~~l~~~gfivy 429 (519)
T KOG1357|consen 354 GYIAG-SKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDG---TNRGRQKIERLAENSRYFRWELQKMGFIVY 429 (519)
T ss_pred ceecC-cHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCc---ccHHHHHHHHHHhhhHHHHHhhhcCcEEEe
Confidence 78888 99999998877662 22 344456544332 22 22 355678888899999999999999988887
Q ss_pred cCCceeEE--EeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--CCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 81 KSNGGFYC--WADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC--IEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 81 ~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~--~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
..+.+..+ .+-.|.. ...+.+.|++ +++.+.-+ .|.. .-....|+|.+. +..|++..+++.+.++
T Consensus 430 G~~dSpVvplll~~~~k--------~~~f~r~~l~-~nigvVvv-gfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~ 499 (519)
T KOG1357|consen 430 GNNDSPVVPLLLYGPAK--------IVAFSREMLE-RNIGVVVV-GFPATPLLESRARFCLSASHTKEDLDRALEVIDRV 499 (519)
T ss_pred cCCCCCcceeeecCccc--------ccHHHHHHHh-cCceEEEE-eCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhh
Confidence 76666332 2233432 3678878887 55555432 2332 226788999976 4667777777776654
Q ss_pred H
Q 042816 156 S 156 (163)
Q Consensus 156 ~ 156 (163)
-
T Consensus 500 g 500 (519)
T KOG1357|consen 500 G 500 (519)
T ss_pred c
Confidence 3
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.014 Score=46.36 Aligned_cols=145 Identities=12% Similarity=0.049 Sum_probs=78.9
Q ss_pred eEEEEEecCHHHHHHHHHhhc------ccCCChHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-
Q 042816 8 RISVIYSYNNSVLAAAKKLAR------FSSVSAPSQNLLVSMLSD---TKFVQKFININRERLRRLYVKFVAGLRQLGI- 77 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~~------~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~- 77 (163)
-+|.+++ .+++.+.+..... .++.+++.-.++.+.|+- +.. .+..++.-+.+.+..+ +..+++++
T Consensus 277 Pi~a~~~-~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l-~~~~~~~g~~l~~~L~---~l~~~~~~i 351 (447)
T PRK06917 277 PIAATVV-SDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNL-PEKAAEKGEYLIKGLQ---KVQQQSTII 351 (447)
T ss_pred ceEEEEE-cHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHH---HHHhcCCCE
Confidence 6899999 8899888764221 134566666655555542 211 2233333333332222 22222332
Q ss_pred ccccCCceeEEEeecCC-c-ccCC---ChhhHHHHHHHHHHhcCeEEcCCC-CCCCCCCceEEEEEec-CChhHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSG-L-ISSY---SEKGELELWDKLLNVAKVNVTPGS-SCHCIEPGWFSFSFTL-LTEKDIHVVME 150 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~-~-~~~~---~~~~~~~~~~~l~~~~gi~v~pg~-~f~~~~~~~iRi~~~~-~~~~~l~~~~~ 150 (163)
.-.... |+++-+++.. . .+.+ ...-...+.+.+++ +||.+.|+. .......+.+|++... +++++++++++
T Consensus 352 ~~vrG~-Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~ 429 (447)
T PRK06917 352 GDVRGK-GLLIGVEFVADKKTKQPFSKSQAVASELISVAAK-NGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLS 429 (447)
T ss_pred EEEeec-ceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHh-CCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHH
Confidence 222233 4455555521 1 0000 00124567777776 999998742 1111124688988652 48899999999
Q ss_pred HHHHHHHHh
Q 042816 151 RIRRISQTC 159 (163)
Q Consensus 151 ~l~~~~~~~ 159 (163)
++.+++.++
T Consensus 430 ~l~~~l~~~ 438 (447)
T PRK06917 430 IFAKSVEEM 438 (447)
T ss_pred HHHHHHHHH
Confidence 999988765
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.013 Score=46.23 Aligned_cols=145 Identities=6% Similarity=0.003 Sum_probs=87.6
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc-ccCCChHHHHHHHHhcCChH--HHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR-FSSVSAPSQNLLVSMLSDTK--FVQKFININRERLRRLYVKFVAGLRQLGIECAKS 82 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 82 (163)
|+-+|-++. .+++.+....... .+.-|+++-+++...|+.-+ -+.++..++-++++++...+.+.... +--.+
T Consensus 296 G~Pl~avv~-r~ei~~~~~g~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~--IgdVR- 371 (447)
T COG0160 296 GLPLSAVVG-RAEIMDWPPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPL--IGDVR- 371 (447)
T ss_pred CCceeEEec-cHHhcccCCcccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCc--eeccc-
Confidence 888999999 8888773222222 36778888777766665321 11233333333333333333333221 11122
Q ss_pred CceeEEEeecCCc--ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 83 NGGFYCWADMSGL--ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 83 ~~g~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
--|+++-+++-.. .+.+...-...+++.+.+ +|+.+.++-.+ .+.+||...- ++++++++++++|.+++.+.
T Consensus 372 G~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~-~Glil~~~G~~----~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 372 GLGLMIGVELVKDRDTKEPDAELAAKIVARAFE-RGLLLLTCGPH----GNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred ccceEEEEEEecCCCCCCCCHHHHHHHHHHHHH-cCCEEeccCCC----CcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 2356777776532 222333456788888877 89988875433 4689998753 58899999999999998764
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0037 Score=48.73 Aligned_cols=116 Identities=11% Similarity=0.182 Sum_probs=72.4
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccccCC-----ceeEEEeecCCcccCCChhhH
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECAKSN-----GGFYCWADMSGLISSYSEKGE 104 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~ 104 (163)
+++.....++...++.- .+.++...+++++.++.+.+.|+++ ++.+..+. +.+ .+.++. + +.
T Consensus 241 t~~~~~~~al~~al~~~---~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~--~v~f~~-~------~~ 308 (402)
T TIGR02006 241 TLPTHQIVGMGEAFRIA---KEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNL--NVSFNY-V------EG 308 (402)
T ss_pred CccHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeE--EEEEeC-c------CH
Confidence 34444445555555432 3456777788899999999999876 55543211 111 122332 1 33
Q ss_pred HHHHHHHHHhcCeEEcCCCCCCCC-----------------CCceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 105 LELWDKLLNVAKVNVTPGSSCHCI-----------------EPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 105 ~~~~~~l~~~~gi~v~pg~~f~~~-----------------~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
.++...| .++.+..|..+... ..+++|+|+.. .+.++++..++.|.++++.++.
T Consensus 309 ~~~~~~l---~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~~ 380 (402)
T TIGR02006 309 ESLIMAL---KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLRE 380 (402)
T ss_pred HHHHHhc---CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4454433 48888887665321 13799999975 3778999999999998877643
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.012 Score=46.88 Aligned_cols=139 Identities=15% Similarity=0.047 Sum_probs=77.6
Q ss_pred ceeEEEEEecCHHHHHHHHHhh------c-----ccCCChHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 6 GFRISVIYSYNNSVLAAAKKLA------R-----FSSVSAPSQNLLVSML---SDTKFVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~------~-----~~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
|+-+|.+++ .+++.+.+.... . .++.+++.-.++...| .+++. .++.+++-+.++ +.+.+.
T Consensus 290 G~Pi~av~g-~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~-~~~~~~~g~~l~---~~L~~l 364 (453)
T PRK07046 290 GVPCAVYGF-SAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAA-YAHMLALAARLA---AGLRAV 364 (453)
T ss_pred CCcceeeee-hHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHH---HHHHHH
Confidence 677999999 889988886421 1 1345666655555444 34322 233333333333 333344
Q ss_pred hhhcCCccc-cCCceeEEEeecCC-ccc------C-CChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCCh
Q 042816 72 LRQLGIECA-KSNGGFYCWADMSG-LIS------S-YSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTE 142 (163)
Q Consensus 72 l~~~g~~~~-~~~~g~~~~~~~~~-~~~------~-~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~ 142 (163)
++++++... ...|.+ +.+.+.. ... . .+..-...++..+++ +||.+.|. .+.++++.. +++
T Consensus 365 ~~~~~~~~~v~g~G~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gv~~~~~-------~~~~~~~p~-~t~ 434 (453)
T PRK07046 365 IARHGLPWHVTRVGAR-VEFQFAPTPPRNGAEAAAALDPELEAALHLYLLN-RGVLITPF-------HNMMLVCPA-TTA 434 (453)
T ss_pred HHhCCCCeEEEEeCcE-EEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHH-CCCEEecc-------cCcEEEeCC-CCH
Confidence 444543322 223333 3333311 100 0 011123456677776 89999762 135788876 599
Q ss_pred hHHHHHHHHHHHHHHHh
Q 042816 143 KDIHVVMERIRRISQTC 159 (163)
Q Consensus 143 ~~l~~~~~~l~~~~~~~ 159 (163)
++++++++++.+++.++
T Consensus 435 ~did~~~~~~~~~l~~~ 451 (453)
T PRK07046 435 ADVDRLVAAFDACLGEL 451 (453)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998765
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.02 Score=44.73 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=76.4
Q ss_pred CCCCceeE-EEEEecCHHHHHHHHHhh-c-c--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 042816 2 LSLPGFRI-SVIYSYNNSVLAAAKKLA-R-F--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL- 75 (163)
Q Consensus 2 ~~~~G~Ri-G~~i~~~~~~~~~~~~~~-~-~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 75 (163)
++++|.|+ ||+++ ++++++.++... . . ...+++....+...++.- +..+++ ..++...+.+.|+++
T Consensus 214 l~g~g~~~gG~v~~-~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~tl---~~r~~~----~~~na~~~a~~L~~~~ 285 (400)
T PRK06234 214 LNGHGDVIAGFVVG-KEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKTL---QIRMEK----HCKNAMKVAKFLESHP 285 (400)
T ss_pred ccCCCCceeEEEEe-cHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH---HHHHHH----HHHHHHHHHHHHHcCC
Confidence 67888775 99999 888888876542 2 2 345555555555556553 333333 335677777777765
Q ss_pred CC-cccc-----------------CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-----------
Q 042816 76 GI-ECAK-----------------SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH----------- 126 (163)
Q Consensus 76 g~-~~~~-----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~----------- 126 (163)
.+ .+.- ..||+ +.++++... .....|.+.|-- .++.+.=|....
T Consensus 286 ~V~~V~~p~l~~~~~~~~~~~~~~~~g~l-~s~~l~~~~-----~~~~~f~~~l~~-~~~~~s~G~~~sl~~~p~~~~~~ 358 (400)
T PRK06234 286 AVEKVYYPGLESFEYYELAKKQMSLPGAM-ISFELKGGV-----EEGKVVMNNVKL-ATLAVSLGDAETLIQHPASMTHS 358 (400)
T ss_pred CeeEEECCCCCCCCcHHHHHHhCCCCCce-EEEEecCcH-----HHHHHHHHhCCc-ceEeccCCCCCceecCCccCCCC
Confidence 22 1111 12443 344665321 234566665432 333322221111
Q ss_pred ---C-------CCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 127 ---C-------IEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 127 ---~-------~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
. ..++-+|+|++- |+.+..++-|.+++..
T Consensus 359 ~~~~~~~~~~gi~~~l~R~svGl---E~~~dl~~dl~~al~~ 397 (400)
T PRK06234 359 PYTAEERKEAGISDGLVRLSVGL---EDVDDIIADLKQALDL 397 (400)
T ss_pred CCCHHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHHHHHHH
Confidence 0 125789999997 4566666666666654
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.012 Score=46.65 Aligned_cols=132 Identities=10% Similarity=0.056 Sum_probs=75.4
Q ss_pred eeEEEEEecCHHHHHHHHHhh-c---ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--C
Q 042816 7 FRISVIYSYNNSVLAAAKKLA-R---FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLG--I 77 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~-~---~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g--~ 77 (163)
+-+|.+++ .+++.+.+.... . .++.++++..++.+.|+ +... .++.+++-+.+++ .|.+...++. +
T Consensus 300 ~Pigavv~-~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l-~~~~~~~G~~l~~---~L~~l~~~~~~~i 374 (442)
T TIGR03372 300 MPIGATIA-TEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNL-PAQAAIKGDFLLD---GFQQLAAEYPDLI 374 (442)
T ss_pred ccceEEEe-cHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH---HHHHHHHhCCCce
Confidence 57899999 889888874321 1 13446666655555543 2221 2222232222222 2222222222 1
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
.-.+ .-|.++-+++... .....+++.|++ +||++.+.. + ..+.+||.... +++++++++++++.++
T Consensus 375 ~~vR-G~Gl~~giel~~~------~~~~~i~~~l~~-~Gvl~~~~~-~---~~~~lr~~Ppl~~t~~~id~~~~~l~~~ 441 (442)
T TIGR03372 375 IEAR-GKGLLMAIEFRDN------EIGYAFAKELFQ-QNILVAGTL-N---NAKSIRIEPPLTITIEQCALVIKAAKDA 441 (442)
T ss_pred EEEe-cceEEEEEEeCCh------HHHHHHHHHHHH-CCcEEeecC-C---CCCEEEEECCcccCHHHHHHHHHHHHHh
Confidence 1122 3466677777542 134678888876 899997531 1 14689988764 5889999999999875
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.012 Score=45.81 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=70.2
Q ss_pred CCceeEEEEEecC--------------HHHHHHHHHhhccc--CCChHHHH-HHHHhcC---ChHHHHHHHHHHHHHHHH
Q 042816 4 LPGFRISVIYSYN--------------NSVLAAAKKLARFS--SVSAPSQN-LLVSMLS---DTKFVQKFININRERLRR 63 (163)
Q Consensus 4 ~~G~RiG~~i~~~--------------~~~~~~~~~~~~~~--~~s~~~q~-~~~~~l~---~~~~~~~~~~~~~~~~~~ 63 (163)
++|=|-|.|.+ + +++.+.+.+..-+. +.....+. +.+..|. .+.+ +...+..-+
T Consensus 234 l~GPrggiI~~-~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~f-----k~Ya~qVv~ 307 (399)
T PF00464_consen 234 LRGPRGGIILT-NKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEF-----KEYAKQVVK 307 (399)
T ss_dssp G-SSS-EEEEE-S-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHH-----HHHHHHHHH
T ss_pred ccccCceEEEE-cCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHH-----HHHHHHHHH
Confidence 57889999999 6 88999998776542 22222221 1112222 2222 344455556
Q ss_pred HHHHHHHHhhhcCCcccc-CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc----CCCCCCCCCCceEEEEEe
Q 042816 64 LYVKFVAGLRQLGIECAK-SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT----PGSSCHCIEPGWFSFSFT 138 (163)
Q Consensus 64 ~~~~l~~~l~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----pg~~f~~~~~~~iRi~~~ 138 (163)
+.+.|.+.|.+.|+++.. ..-+-.+|+++.... .+..+..+ .+++.||.+. |+. -....+..+||+..
T Consensus 308 NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~-----~~g~~a~~-~Le~~gI~vnkn~iP~d-~~~~~~sGlRlGT~ 380 (399)
T PF00464_consen 308 NAKALAEALQERGFKVVTGGTDNHQVLVDLRSFG-----IDGKEAEK-ALEEAGIIVNKNTIPGD-RSPFVPSGLRLGTP 380 (399)
T ss_dssp HHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGT-----S-HHHHHH-HHHHTTEE-EEE--TTT-STTTT-SEEEEESH
T ss_pred HHHHHHHHHhhCCcEEEECCCCCCeEEEEecccc-----cchHHHHH-HHHhcCeeecccccCCC-CCCCCCCEEEECCH
Confidence 899999999999988863 334446788986521 14455555 4566999985 333 11112578999976
Q ss_pred c
Q 042816 139 L 139 (163)
Q Consensus 139 ~ 139 (163)
.
T Consensus 381 ~ 381 (399)
T PF00464_consen 381 A 381 (399)
T ss_dssp H
T ss_pred H
Confidence 4
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.015 Score=46.94 Aligned_cols=138 Identities=10% Similarity=0.033 Sum_probs=76.8
Q ss_pred eeEEEEEecCHHHHHHHHHh-------hc--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 7 FRISVIYSYNNSVLAAAKKL-------AR--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~-------~~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+-+|-+++ ++++.+.+... .. .++.++++-.++.+.|+ +.+. .++.+++-+.+++..+.+ .+
T Consensus 336 ~PigAv~~-~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l-~~~~~~~g~~l~~~L~~l----~~ 409 (504)
T PLN02760 336 MPIGAVLV-SPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNI-PEHVNKIAPRFQDGIKAF----SG 409 (504)
T ss_pred cccceEee-cHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHH----hc
Confidence 47899899 89998888642 11 23556666665555553 2221 233333333333333322 23
Q ss_pred cCC-ccccCCceeEEEeecCCc-ccCCC----hhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHH
Q 042816 75 LGI-ECAKSNGGFYCWADMSGL-ISSYS----EKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHV 147 (163)
Q Consensus 75 ~g~-~~~~~~~g~~~~~~~~~~-~~~~~----~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~ 147 (163)
+.+ .-.... |.++-+++... ..... ..-...+.+.+++ +||.+.++ .+.+|++... ++++++++
T Consensus 410 ~~~v~~vrG~-Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~-------g~~lrl~Ppl~it~eeid~ 480 (504)
T PLN02760 410 SPIIGEIRGT-GLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKK-RGMLVRVA-------GDNIMMSPPLIITPEEVDE 480 (504)
T ss_pred CCCeeeEEeC-ceEEEEEEecCCcccccccchhHHHHHHHHHHHh-CCcEEEec-------CCEEEEECCCCCCHHHHHH
Confidence 322 222233 44555555321 00000 0114557777776 89999762 2468888542 38899999
Q ss_pred HHHHHHHHHHHh
Q 042816 148 VMERIRRISQTC 159 (163)
Q Consensus 148 ~~~~l~~~~~~~ 159 (163)
+++++.+++.++
T Consensus 481 ~~~~l~~al~~~ 492 (504)
T PLN02760 481 LISIYGKALKAT 492 (504)
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.011 Score=44.89 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=77.1
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhccc-----------------CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARFS-----------------SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYV 66 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~~-----------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 66 (163)
+++-+.|++++.++++.+.+....... .++.+...++... .+.+++..+..+++.+
T Consensus 170 ~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~-------l~~~~~~~~~~~~~~~ 242 (352)
T cd00616 170 LTTGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQ-------LEKLDEIIARRREIAE 242 (352)
T ss_pred CcccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHH-------HHhhHHHHHHHHHHHH
Confidence 455678999885578877766543211 1111111111111 1234566667778889
Q ss_pred HHHHHhhhc-CCccccCCc-----eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-------------
Q 042816 67 KFVAGLRQL-GIECAKSNG-----GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------------- 127 (163)
Q Consensus 67 ~l~~~l~~~-g~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------------- 127 (163)
++.+.|+++ |+++..+.. ...+.+.++... + .+..++.+.|.+ +||.+........
T Consensus 243 ~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~v~~~L~~-~gI~~~~~~~~~~~~~~~~~~~~~~~ 317 (352)
T cd00616 243 RYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEA---G-ESRDELIEALKE-AGIETRVHYPPLHHQPPYKKLLGYPP 317 (352)
T ss_pred HHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcC---C-CCHHHHHHHHHH-CCCCeeeecCccccCHhhhhccCCCc
Confidence 999999887 777664322 223344454300 0 267888888865 8997653211000
Q ss_pred -CC-------CceEEEEEec-CChhHHHHHHHHH
Q 042816 128 -IE-------PGWFSFSFTL-LTEKDIHVVMERI 152 (163)
Q Consensus 128 -~~-------~~~iRi~~~~-~~~~~l~~~~~~l 152 (163)
.. .+.+|+++.. .+.++++..++.|
T Consensus 318 ~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l 351 (352)
T cd00616 318 GDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEAL 351 (352)
T ss_pred CCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHh
Confidence 00 2679998864 3777877766655
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0084 Score=46.97 Aligned_cols=96 Identities=20% Similarity=0.257 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-CCccccCC---ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-
Q 042816 54 ININRERLRRLYVKFVAGLRQL-GIECAKSN---GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI- 128 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~- 128 (163)
++.+.++-++..+++.+.|+++ ++++..|. .+-.+.+.++.. ++.+++..|.+ +||.++.|..+..+
T Consensus 298 ~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~-------~~~dv~~~L~~-~gI~vr~g~~ca~p~ 369 (405)
T COG0520 298 MEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGI-------HPHDVATLLDE-KGIAVRAGHHCAQPL 369 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCC-------CHHHHHHHHHh-CCeEEEeccccccHH
Confidence 5677788888889999999998 78887764 233344455542 67899988766 88999999776532
Q ss_pred -----CCceEEEEEec-CChhHHHHHHHHHHHHHH
Q 042816 129 -----EPGWFSFSFTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 129 -----~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
-+..+|+|+.. .+.|+++..++.|+++.+
T Consensus 370 ~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 370 HRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred HHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 14559999975 488898888888887653
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.015 Score=46.30 Aligned_cols=140 Identities=11% Similarity=0.056 Sum_probs=78.6
Q ss_pred eeEEEEEecCHHHHHHHHHhh---------cccCCChHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 7 FRISVIYSYNNSVLAAAKKLA---------RFSSVSAPSQNLLVSML---SDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~---------~~~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+-+|.+++ ++++.+.+.... ..++.++++-.++.+.| ++++. .+..+++-+.+++..+.+ ++
T Consensus 294 ~P~~av~~-~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l-~~~v~~~g~~l~~~L~~l----~~ 367 (460)
T PRK06105 294 QPLSAVLM-NEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDL-VGNAAERGARLQARLRAL----AD 367 (460)
T ss_pred ccceEEEE-cHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHh----hc
Confidence 57899999 889988876421 12345666665554444 33322 233333444333333322 33
Q ss_pred cC-CccccCCceeEEEeecCCc-ccCCC----hhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHH
Q 042816 75 LG-IECAKSNGGFYCWADMSGL-ISSYS----EKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHV 147 (163)
Q Consensus 75 ~g-~~~~~~~~g~~~~~~~~~~-~~~~~----~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~ 147 (163)
+. +.-.... |+++-+++... ..... ..-...+...+++ +||.+.|. .+.+|++... ++++++++
T Consensus 368 ~~~v~~vrG~-Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~-~Gvl~~~~-------g~~i~l~Ppl~it~~eid~ 438 (460)
T PRK06105 368 HPLVGEVRGV-GLIAAVELVADKATKTPFEPPGKVGARANAAAHE-HGVISRAM-------GDTLAFCPPLIITAAQVDE 438 (460)
T ss_pred CCCeEEEEec-ceEEEEEEecCcccCCCCCchhHHHHHHHHHHHH-CCeEEEec-------CCEEEEECCCccCHHHHHH
Confidence 32 2222233 44544555321 00000 0113467777765 89999763 1478888653 48899999
Q ss_pred HHHHHHHHHHHhhh
Q 042816 148 VMERIRRISQTCKS 161 (163)
Q Consensus 148 ~~~~l~~~~~~~~~ 161 (163)
+++++.+++.++..
T Consensus 439 ~~~~l~~~l~~~~~ 452 (460)
T PRK06105 439 MVDRFGRALDDVAA 452 (460)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0083 Score=47.57 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=65.3
Q ss_pred cCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-C--ccccCCceeEEEeecCCcccCCChhh
Q 042816 30 SSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLG-I--ECAKSNGGFYCWADMSGLISSYSEKG 103 (163)
Q Consensus 30 ~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~--~~~~~~~g~~~~~~~~~~~~~~~~~~ 103 (163)
++.++++..++...|+ +.+. .+..+++-+.+.+ .+.+..+++. + ++. +. |.++.++++.. ..
T Consensus 325 ~~gnpl~~aaa~a~L~~l~~~~l-~~~~~~~g~~l~~---~L~~l~~~~~~~~~~vr-g~-G~~~~i~~~~~------~~ 392 (443)
T PRK08297 325 WGGNLVDMVRARRILEVIEEDGL-VENAARQGEYLLA---RLEELAAEFPAVVSNVR-GR-GLMCAFDLPTT------AD 392 (443)
T ss_pred CCccHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHH---HHHHHHHHCCCcceeee-cc-ceEEEEEecCH------HH
Confidence 3456666665555554 2221 2333333333333 3333333332 2 333 34 56677777542 13
Q ss_pred HHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 104 ELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 104 ~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
...+++.|++ +||++.|+. .+.+|++.+. ++++++++++++|.+++.++
T Consensus 393 ~~~~~~~l~~-~Gvl~~~~~------~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 393 RDEVIRRLWE-EGVLVLPCG------ERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred HHHHHHHHHH-CCEEEecCC------CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 5678888886 999998742 3568885432 48999999999999998765
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.027 Score=44.77 Aligned_cols=141 Identities=11% Similarity=0.003 Sum_probs=76.6
Q ss_pred eeEEEEEecCHHHHHHHHHhh------c---ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 7 FRISVIYSYNNSVLAAAKKLA------R---FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~------~---~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+-+|.+++ ++++.+.+.... . .++.+++.-.++.+.|+ ++.. .+..+++-+.+.+. +.+..++
T Consensus 289 ~Pi~av~~-~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l-~~~~~~~g~~l~~~---L~~l~~~ 363 (449)
T PRK07481 289 VPLGATMV-NARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDL-PANAAKRGAYLLEG---LQPLKER 363 (449)
T ss_pred cCceEEEE-cHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHH---HHHHhhc
Confidence 47899999 889988875321 1 13456666555555543 3221 22333333333322 2222222
Q ss_pred cCCccccCCceeEEEeecCCc--ccCC---ChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHH
Q 042816 75 LGIECAKSNGGFYCWADMSGL--ISSY---SEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVV 148 (163)
Q Consensus 75 ~g~~~~~~~~g~~~~~~~~~~--~~~~---~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~ 148 (163)
+++....-.-|.++.+++... .+.+ .......+.+.+++ +||++.|. + +.+||+... +++++++++
T Consensus 364 ~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~---g----~~i~l~Ppl~it~~eid~~ 435 (449)
T PRK07481 364 FELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARE-NGVLVRPS---G----TKIILSPPLVIQREDVDRI 435 (449)
T ss_pred CCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHh-CCeEEEec---C----CEEEEECCCCCCHHHHHHH
Confidence 332221223355566666321 0000 01123466777766 89999763 1 247887442 488999999
Q ss_pred HHHHHHHHHHhh
Q 042816 149 MERIRRISQTCK 160 (163)
Q Consensus 149 ~~~l~~~~~~~~ 160 (163)
++.+.+++.++.
T Consensus 436 ~~~l~~~l~~~~ 447 (449)
T PRK07481 436 VDALDAGLSAVP 447 (449)
T ss_pred HHHHHHHHHhcc
Confidence 999999997753
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.024 Score=43.70 Aligned_cols=143 Identities=10% Similarity=0.091 Sum_probs=86.8
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcccCCChHHH-HHH------HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQ-NLL------VSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q-~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
++|=|-|.|.+.++++.+.+.+.--+...+.+.+ .++ .++++ ++| .+ -.+..-+|.+.|.+.|.+.|
T Consensus 231 lrGPrGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~-p~f-k~----Ya~qVv~NAkaLAe~l~~~G 304 (413)
T COG0112 231 LRGPRGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALE-PEF-KE----YAKQVVKNAKALAEALKERG 304 (413)
T ss_pred CCCCCceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcC-hhH-HH----HHHHHHHHHHHHHHHHHHcC
Confidence 5788999999944689888888665533333332 222 23333 223 33 34445568899999999999
Q ss_pred CccccCCcee-EEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC-CCCCCC---CCCceEEEEEec-----CChhHHH
Q 042816 77 IECAKSNGGF-YCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP-GSSCHC---IEPGWFSFSFTL-----LTEKDIH 146 (163)
Q Consensus 77 ~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p-g~~f~~---~~~~~iRi~~~~-----~~~~~l~ 146 (163)
+++...-.-- .+.+|+.... .+..+... ++++.||.+.- +-.|.. -.+..|||.... ..+++++
T Consensus 305 ~~vvsGgTdnHl~lVDl~~~~-----~~Gk~ae~-~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~ 378 (413)
T COG0112 305 FKVVSGGTDNHLVLVDLRSKG-----LTGKKAEA-ALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEME 378 (413)
T ss_pred CeEecCCccceEEEEEcccCC-----CCHHHHHH-HHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHH
Confidence 8887522222 3556776311 13444444 55668999863 333332 126789998754 3556788
Q ss_pred HHHHHHHHHHHH
Q 042816 147 VVMERIRRISQT 158 (163)
Q Consensus 147 ~~~~~l~~~~~~ 158 (163)
+.-+.|.+++..
T Consensus 379 ~Ia~~I~~vl~~ 390 (413)
T COG0112 379 EIADLIADVLDG 390 (413)
T ss_pred HHHHHHHHHHhc
Confidence 887777777754
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.024 Score=43.57 Aligned_cols=133 Identities=11% Similarity=0.104 Sum_probs=81.1
Q ss_pred eEEEEEecCHHHHHHHHHh-------h----c---ccCCChHHHHHHHHhcCChHHHHHH--HHHHHHHHHHHHHHHHHH
Q 042816 8 RISVIYSYNNSVLAAAKKL-------A----R---FSSVSAPSQNLLVSMLSDTKFVQKF--ININRERLRRLYVKFVAG 71 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~-------~----~---~~~~s~~~q~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~ 71 (163)
.+|++++ ++++.+.+... . . +.+++.....++.++++-- .+. ++...+++++..+++.+.
T Consensus 199 G~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l---~~~gg~e~i~~~~~~l~~~l~~~ 274 (355)
T cd00611 199 GVTVVIV-RKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWL---KEQGGVEAMEKRNRQKAQLLYDT 274 (355)
T ss_pred ceEEEEE-CHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHH
Confidence 4678888 77776553321 1 0 1234444555555554432 232 678889999999999999
Q ss_pred hhhc-CCc-cc-cC--CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHH
Q 042816 72 LRQL-GIE-CA-KS--NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDI 145 (163)
Q Consensus 72 l~~~-g~~-~~-~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l 145 (163)
|+++ |+. .. .+ ..+..+-+.++.. ....++...+.+ .|+.+.+|.. ..+.+|+|+.. .+.+++
T Consensus 275 l~~~~gl~~~~~~~~~rs~~vvsf~~~~~------~l~~~~~~~~~r-~G~~~~~~~~----~~g~vR~S~~~~nt~edi 343 (355)
T cd00611 275 IDNSNGFYRGPVDKRARSRMNVPFRLGKE------ELEKEFLKEAEA-AGMIGLKGHR----SVGGIRASIYNALSLEGV 343 (355)
T ss_pred HHhCccccccCCCHHHcCceEEEEEcCCh------hhhHHHHHHHHH-CCCcccCCCc----ccCeEEEEccCCCCHHHH
Confidence 9998 852 21 11 2323344455431 023555455555 8998666654 14689999964 478888
Q ss_pred HHHHHHHHHH
Q 042816 146 HVVMERIRRI 155 (163)
Q Consensus 146 ~~~~~~l~~~ 155 (163)
+..++.|+++
T Consensus 344 ~~l~~al~~~ 353 (355)
T cd00611 344 QALADFMKEF 353 (355)
T ss_pred HHHHHHHHHH
Confidence 8888887764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.031 Score=44.32 Aligned_cols=148 Identities=11% Similarity=0.133 Sum_probs=80.6
Q ss_pred ce-eEEEEEecCHHHHHHHHHhh------cccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 6 GF-RISVIYSYNNSVLAAAKKLA------RFSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 6 G~-RiG~~i~~~~~~~~~~~~~~------~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
|+ -+|.+++ ++++.+.+.... ..++.+++.-.++.+.|+ ++.. .+..+++-+.+++..+ +.++++
T Consensus 274 G~~Pi~av~~-~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l-~~~~~~~g~~l~~~L~---~l~~~~ 348 (443)
T PRK07483 274 GYQPIGAVLA-SDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGL-LANVRARGEQLRARLR---ERLGQH 348 (443)
T ss_pred CccccEEEEE-cHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHH---HHHhcC
Confidence 53 7899999 889888775421 123456666655555543 3322 2333444444333333 333333
Q ss_pred C-CccccCCceeEEEeecCCc--ccCC---ChhhHHHHHHHHHHhcCeEEcCCC-CCCCCCCceEEEEEec-CChhHHHH
Q 042816 76 G-IECAKSNGGFYCWADMSGL--ISSY---SEKGELELWDKLLNVAKVNVTPGS-SCHCIEPGWFSFSFTL-LTEKDIHV 147 (163)
Q Consensus 76 g-~~~~~~~~g~~~~~~~~~~--~~~~---~~~~~~~~~~~l~~~~gi~v~pg~-~f~~~~~~~iRi~~~~-~~~~~l~~ 147 (163)
. +.-.+.. |+++-+++... .+.+ ...-...+.+.+++ +||++.|.. .......+.+|+.-.. ++++++++
T Consensus 349 ~~i~~vRG~-Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~ 426 (443)
T PRK07483 349 PHVGDIRGR-GLFVGVELVADRATKAPFDPALKLHARIKREAMA-RGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDE 426 (443)
T ss_pred CCeeeEeec-ccEEEEEEeecccccCCCCchhhHHHHHHHHHHH-CCcEEEecCccccCCCCCEEEEECCCCCCHHHHHH
Confidence 2 2222233 44444455221 0000 00123567777776 999998742 1111113678987643 48899999
Q ss_pred HHHHHHHHHHHhh
Q 042816 148 VMERIRRISQTCK 160 (163)
Q Consensus 148 ~~~~l~~~~~~~~ 160 (163)
++++|.+++.+..
T Consensus 427 ~~~~l~~~l~~~~ 439 (443)
T PRK07483 427 IVERLGDAIDAAL 439 (443)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.013 Score=46.31 Aligned_cols=141 Identities=8% Similarity=0.070 Sum_probs=78.3
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc-c----cCCChHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR-F----SSVSAPSQNLLVSML---SDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~-~----~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
|+-+|++++ ++++.+.+..... + ++.+++.-.++.+.| ++++. .+.++++-+.+ .+.+.+.+.+.|+
T Consensus 274 G~p~~av~~-~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~-~~~~~~~g~~l---~~~l~~~~~~~g~ 348 (433)
T PRK00615 274 GLPAAAVVA-HKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGF-YTQLSTLEQNF---LSPIEEMIRSQGF 348 (433)
T ss_pred Ccceeeeee-cHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccH-HHHHHHHHHHH---HHHHHHHHHHcCC
Confidence 577999999 8999888854322 1 234555555444444 33221 22223333333 2233344444454
Q ss_pred ccccCCceeEEEeecCCc----ccC---CChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGL----ISS---YSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~----~~~---~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
.+.....|.++.+++... +.. ........+...|++ +||.+.|... . .. =+|... ++++++..++
T Consensus 349 ~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~-~---~~--~ls~~h-t~~did~~~~ 420 (433)
T PRK00615 349 PVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFS-KGVYLSPSPF-E---AS--FLSSAH-SMENLDYAQN 420 (433)
T ss_pred CeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHH-CCeeecCccc-c---cc--ceecCC-CHHHHHHHHH
Confidence 433222455666666431 100 011124578888887 8999987531 1 11 245554 8899999999
Q ss_pred HHHHHHHHh
Q 042816 151 RIRRISQTC 159 (163)
Q Consensus 151 ~l~~~~~~~ 159 (163)
.+.++++..
T Consensus 421 a~~~~~~~~ 429 (433)
T PRK00615 421 VLIDSLEKV 429 (433)
T ss_pred HHHHHHHHH
Confidence 999988764
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.025 Score=42.26 Aligned_cols=127 Identities=9% Similarity=0.052 Sum_probs=80.9
Q ss_pred eeEEEEEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcccc
Q 042816 7 FRISVIYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECAK 81 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~ 81 (163)
--+|-++..|+++++.-+.+... +.-+.+..+++...|.+. .. ..+.-.++...+.+.++.. ++.+..
T Consensus 229 APVGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~~---~~----~L~~dHk~A~~lAe~~~~~~~i~v~v 301 (384)
T KOG1368|consen 229 APVGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDEN---VP----LLRADHKRAKELAEYINTPEEIRVEV 301 (384)
T ss_pred CCcccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhcc---hH----HHHHHHHHHHHHHHHhccccceeeec
Confidence 34676666699999887766663 345666666555555553 12 2233334566677777766 355554
Q ss_pred C--CceeEEEeec-CCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 82 S--NGGFYCWADM-SGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 82 ~--~~g~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
| +.++-. +.+ ... .+...+++.+.+ +||.+.+|..+ .+||.+-. +++++++..+..+.+
T Consensus 302 ~a~etNiv~-~~l~q~~------~~~~~l~~~~~k-~gi~lm~~~s~------r~Rivlh~Qvt~~~ve~~~~~~~k 364 (384)
T KOG1368|consen 302 PAVETNIVN-MVLCQAR------LTAEELCKFLEK-NGILLMGGASR------RIRIVLHHQVTDEDVEYVKSVLSK 364 (384)
T ss_pred chhhcceee-eeccccc------CCHHHHHHHHHH-CCeEEeecccc------ceEEEEEEecCHHHHHHHHHHHHH
Confidence 4 444433 333 222 278999998876 99999987643 47888753 588999999888843
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.031 Score=42.46 Aligned_cols=133 Identities=14% Similarity=0.147 Sum_probs=82.4
Q ss_pred ceeEEEEEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECA 80 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 80 (163)
|+-+|-+++.|.++++.+...... +.-+.+.......+|++.-| ...-.+-.+....|.+.|.+. |+++.
T Consensus 203 ~~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~-----~~~~~Han~mA~~La~~~~~~~G~~~~ 277 (342)
T COG2008 203 GAPVGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVW-----RLAADHANAMAARLAEGLEAKPGVKLA 277 (342)
T ss_pred cceeeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHH-----HHHHHHHHHHHHHHHHhhhhcCCceec
Confidence 344666666699999998877663 45566777777788888633 111122223477788899866 98888
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
.|.-...+++++++.. .+...+...+.. .|+.+.++. .-+|+..+. .+++++++.+..+++++
T Consensus 278 ~~~~tN~vf~~l~~~~-----i~~l~~~~~~~~-~~~~~~~~~-------~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 278 FPVETNMVFVRLPESA-----IEALRLAGALFY-RGVLIGAHG-------EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred cCCcccEEEEECChHH-----HHHHHhhchhhe-eeeeccCCC-------ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 7644446778888521 122233333322 455554432 357877754 37788888888877653
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.03 Score=48.88 Aligned_cols=145 Identities=8% Similarity=0.024 Sum_probs=82.3
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc---ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR---FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~---~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.|+-+|.+++ .+++.+.+..-.. .++.++++-.++.+.|+ +... .+..+++-+.+++..+.+ .+++++-
T Consensus 858 gG~Plgav~~-~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~l-~~~~~~~G~~l~~~L~~l---~~~~~~i 932 (1013)
T PRK06148 858 NGHPMGAVVT-TREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDL-QRNALEIGNYLLAGLREL---QDRFDII 932 (1013)
T ss_pred CCcceEEEEE-cHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHH---HHhCCCc
Confidence 3677999999 8999888754221 23456666555554443 3322 233333334433333322 2333321
Q ss_pred cccCCceeEEEeecCCc--ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGL--ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
...-.-|+++-+++... ...+.......+.+.+++ +||.+.+... ..+.+||.... +++++++++++++.++
T Consensus 933 ~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~g~----~~~vlr~~Ppl~it~~~id~~l~~l~~~ 1007 (1013)
T PRK06148 933 GDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARE-RGILIGTEGP----HDNVLKIRPPLIFSRADADHLLEVLDDV 1007 (1013)
T ss_pred eEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHh-CCeEEeccCC----CCCEEEEeCCccCCHHHHHHHHHHHHHH
Confidence 11223355555666421 011111124567777776 8999976421 14778888754 4889999999999999
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+.++
T Consensus 1008 l~~~ 1011 (1013)
T PRK06148 1008 LAAA 1011 (1013)
T ss_pred HHHH
Confidence 8764
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.015 Score=45.42 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=39.2
Q ss_pred CCCCceeEE-EEEecCHHHHH-HHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 2 LSLPGFRIS-VIYSYNNSVLA-AAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 2 ~~~~G~RiG-~~i~~~~~~~~-~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
|+.+|.|+| ++++ +++.++ .+...... ..++++.+..+..-|+.- ....+...++...+.+.|+++ +
T Consensus 213 l~g~g~~~GG~vv~-~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~tl-------~~R~~~~~~na~~la~~L~~~p~ 284 (398)
T PRK07504 213 IDGQGRCLGGVVLS-DKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLETL-------PVRVRQQTESAAAIADFLAGHPK 284 (398)
T ss_pred ccCCccceEEEEEe-CcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchH-------HHHHHHHHHHHHHHHHHHHcCCC
Confidence 678999996 5555 666654 34443332 344555555554444442 333333346777788888876 4
Q ss_pred C
Q 042816 77 I 77 (163)
Q Consensus 77 ~ 77 (163)
+
T Consensus 285 v 285 (398)
T PRK07504 285 V 285 (398)
T ss_pred c
Confidence 4
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0045 Score=46.89 Aligned_cols=133 Identities=16% Similarity=0.233 Sum_probs=89.2
Q ss_pred CCCCceeEEEE--EecCHHHHHHHHH----hhcc--cCCChHHHHHHHHhcCChHHHH---HHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVI--YSYNNSVLAAAKK----LARF--SSVSAPSQNLLVSMLSDTKFVQ---KFININRERLRRLYVKFVA 70 (163)
Q Consensus 2 ~~~~G~RiG~~--i~~~~~~~~~~~~----~~~~--~~~s~~~q~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~ 70 (163)
.|+-|=|+|-+ ++.+++....+.. ...+ ++++.-...+++.+|++++... ..++-+..++...++.|.+
T Consensus 275 MGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d 354 (427)
T KOG1411|consen 275 MGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFD 354 (427)
T ss_pred cchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhH
Confidence 57889999986 4456665555433 3332 4555566788999999975323 3346667777888888888
Q ss_pred HhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHH
Q 042816 71 GLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIH 146 (163)
Q Consensus 71 ~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~ 146 (163)
.|.+.| ++...-+-|+|.+..+. .+.++.|.+++.|+++. + =|||++.++..++.
T Consensus 355 ~L~~~gs~~~W~hI~~QIGMF~fTgl~-----------peQv~~l~ke~~iYmT~------d----GRiS~aG~ss~nV~ 413 (427)
T KOG1411|consen 355 ALEKEGSPGNWSHITKQIGMFCFTGLN-----------PEQVDWLTKEYHIYLTK------D----GRISMAGLSSSNVP 413 (427)
T ss_pred HhhcCCCCccHHHHHHhhheeeecCCC-----------HHHHHHHHhhheeeecc------C----ceEeeccccccCCc
Confidence 888763 44466788999887765 44556677888999863 1 28998876666655
Q ss_pred HHHHHHHHH
Q 042816 147 VVMERIRRI 155 (163)
Q Consensus 147 ~~~~~l~~~ 155 (163)
...+.|-++
T Consensus 414 yLa~aih~v 422 (427)
T KOG1411|consen 414 YLADAIHAV 422 (427)
T ss_pred ccchhhHhH
Confidence 554444443
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.016 Score=45.66 Aligned_cols=130 Identities=10% Similarity=0.018 Sum_probs=76.3
Q ss_pred eEEEEEecCHHHHHHHHHhh-------cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----
Q 042816 8 RISVIYSYNNSVLAAAKKLA-------RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG---- 76 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~-------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g---- 76 (163)
-++-++. ++++.+.+.... ..+..++++..++.+.|+-- ++ +...+..+++-+++.+.|++++
T Consensus 285 p~~a~~~-~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~ 358 (427)
T TIGR00508 285 TLSATVT-TDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAIL---LE--GEWQKQVSAIENQLKRELSPLRKNPV 358 (427)
T ss_pred cceEEEE-cHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 4666777 888988886531 11234666666555555421 11 1223444455555555555542
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
+.-.... |..+-+.+... .+...+.+.|++ +||.+.+. + +.+|++... +++++++++++.+.++
T Consensus 359 i~~vrg~-G~~~~i~~~~~------~~~~~~~~~l~~-~Gv~~~~~---~----~~l~~~ppl~~t~~~id~~~~~l~~~ 423 (427)
T TIGR00508 359 VKDVRVL-GAIGVVEMYKP------VNVEELQKKFVE-QGVWIRPF---G----KLIYVMPPYIITTEQLQKLTAALIEA 423 (427)
T ss_pred EEeEecc-ccEEEEEECCc------cCHHHHHHHHHH-CCeEEEec---C----CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 1111112 44455555421 145678888876 89999753 1 358887752 4889999999999998
Q ss_pred HHH
Q 042816 156 SQT 158 (163)
Q Consensus 156 ~~~ 158 (163)
+.+
T Consensus 424 l~~ 426 (427)
T TIGR00508 424 LHE 426 (427)
T ss_pred Hhc
Confidence 754
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.063 Score=41.84 Aligned_cols=66 Identities=17% Similarity=0.043 Sum_probs=49.4
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
|.++++.|++++.++++++.+...... .+.+++.+..+...|+. +....+...++...+.+.|+++
T Consensus 202 G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~t-------l~~R~~~~~~na~~la~~L~~~ 269 (386)
T PRK08045 202 GHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LVPRMELAQRNAQAIVKYLQTQ 269 (386)
T ss_pred CCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 457788999988568888888766554 45788888888888776 3455566667788888888887
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0059 Score=47.12 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=78.0
Q ss_pred EEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C-Cccc-cCC
Q 042816 9 ISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G-IECA-KSN 83 (163)
Q Consensus 9 iG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g-~~~~-~~~ 83 (163)
.|++++.++++.+.+...... ...+++....+..-|+. +....+...++...+.+.|+++ + ..+. ++.
T Consensus 207 gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~t-------L~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~ 279 (364)
T PRK07269 207 AGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKT-------LSLRMERSTANAQEVVAFLKKSPAVKEVLYTGK 279 (364)
T ss_pred ceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc-------HHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCc
Confidence 578887567888877755543 34566666666666665 2344444566788888888887 4 3444 777
Q ss_pred ceeEEEeecCCcccCCChhhHHHHHHH---------HHHhcCeEEcCCCCCCC-----------CCCceEEEEEecCChh
Q 042816 84 GGFYCWADMSGLISSYSEKGELELWDK---------LLNVAKVNVTPGSSCHC-----------IEPGWFSFSFTLLTEK 143 (163)
Q Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~~~gi~v~pg~~f~~-----------~~~~~iRi~~~~~~~~ 143 (163)
||++.+.- ... .....|.+. |-....+.+.|++.+.. ..++-+|+|++- |
T Consensus 280 gg~~sf~~-~~~------~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvGl---E 349 (364)
T PRK07269 280 GGMISFKV-ADE------TRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGI---E 349 (364)
T ss_pred CcEEEEEE-CCH------HHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEecc---C
Confidence 88766543 211 122333332 22223455667544321 126799999997 5
Q ss_pred HHHHHHHHHHHHH
Q 042816 144 DIHVVMERIRRIS 156 (163)
Q Consensus 144 ~l~~~~~~l~~~~ 156 (163)
+.+..++-|.+++
T Consensus 350 ~~~dli~dl~~al 362 (364)
T PRK07269 350 DARDLIADLKQAL 362 (364)
T ss_pred CHHHHHHHHHHHh
Confidence 5666666666655
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.04 Score=42.93 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=39.8
Q ss_pred CCCCceeE-EEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLPGFRI-SVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~G~Ri-G~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
++.+|.++ ||+++ ++++++.+....... .++.+.+..+..-++ .+....+.+.++...+.+.|+++
T Consensus 209 ~~g~g~~~GG~vv~-~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~-------tl~~R~~~~~~~a~~la~~L~~~ 277 (390)
T PRK08133 209 LDGQGRVLGGAVVG-SKELMEEVFGFLRTAGPTLSPFNAWVFLKGLE-------TLSLRMEAHSANALALAEWLEAH 277 (390)
T ss_pred ecCCcceEeEEEEc-CHHHHHHHHHHHHHhCCCCCHHHHHHHHcccc-------hHHHHHHHHHHHHHHHHHHHHhC
Confidence 56788998 56666 788877776555432 344444333322222 23444445556888899999887
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.021 Score=45.04 Aligned_cols=138 Identities=14% Similarity=0.159 Sum_probs=73.2
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc-----ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR-----FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~-----~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
|+-+|.+++ ++++.+.+..... .++.+++.-.++.+.|+ +++. .+..+++-+.+++..+ +..+++++
T Consensus 273 G~Pi~av~~-~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l-~~~~~~~g~~l~~~L~---~l~~~~~~ 347 (428)
T PRK12389 273 GLPIGAYGG-RKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGV-YEKLDRLGAMLEEGIL---EAAEKHGI 347 (428)
T ss_pred CCceeEEeE-HHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHH---HHHHhCCC
Confidence 567899988 8899888753211 13456666555544443 3322 2333333333333222 22233442
Q ss_pred --ccccCCceeEEEeecCC-ccc-----C-CChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHH
Q 042816 78 --ECAKSNGGFYCWADMSG-LIS-----S-YSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVV 148 (163)
Q Consensus 78 --~~~~~~~g~~~~~~~~~-~~~-----~-~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~ 148 (163)
.+....| ++ -+.+.. ... . ........+.+.+.+ +||.+.|.. .+.+.+++.. ++++++++
T Consensus 348 ~~~v~r~~g-~~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~------~~~~~~~l~~-t~e~id~~ 417 (428)
T PRK12389 348 TITINRLKG-AL-TVYFTDEKVTNYDQAERSDGEAFGKFFKLMLN-QGINLAPSK------YEAWFLTTAH-TEEDIEET 417 (428)
T ss_pred CEEEEecCc-EE-EEEEeCCCCCChhhhcccCHHHHHHHHHHHHH-CCcEeecCC------CCCeeecCCC-CHHHHHHH
Confidence 2323333 33 233321 000 0 011124567777776 899998742 1224566554 89999999
Q ss_pred HHHHHHHHHH
Q 042816 149 MERIRRISQT 158 (163)
Q Consensus 149 ~~~l~~~~~~ 158 (163)
++.+.+++.+
T Consensus 418 ~~~l~~~l~~ 427 (428)
T PRK12389 418 LEAVDRAFAQ 427 (428)
T ss_pred HHHHHHHHHh
Confidence 9999998865
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.045 Score=43.88 Aligned_cols=103 Identities=12% Similarity=0.065 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccccCCceeE-EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCce
Q 042816 54 ININRERLRRLYVKFVAGLRQLGIECAKSNGGFY-CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGW 132 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~ 132 (163)
+++..+...++.+++.+.|.++ +++..+...+. +.++.+.. ...+ .+..++.+.|.+ +||.+. +..|.....+.
T Consensus 347 l~~~a~~~~~~a~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~-~~~g-~~~~~v~~~L~~-~Gi~~~-~~~~p~~~~~~ 421 (481)
T PRK04366 347 LREVSEDAVLNANYLKARLKDI-YDLPYDRPCMHEFVLSGKKL-KETG-VRTLDIAKRLLD-YGFHPP-TIYFPLIVPEA 421 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhHhh-CcccCCCCeeEEEEEECccc-cccC-CCHHHHHHHHHH-CCccCC-ccccccccCCe
Confidence 4555566677788888888886 22222111111 23333310 0011 157889998887 899865 22332222568
Q ss_pred EEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 133 FSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 133 iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
+|+++.. .+.++++..++.|.++.++...
T Consensus 422 l~is~~e~~t~edid~l~~~l~~i~~~~~~ 451 (481)
T PRK04366 422 LMIEPTETESKETLDAFIAAMKQIAEEAKE 451 (481)
T ss_pred EEEcccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999863 3788999999999998877654
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.037 Score=48.13 Aligned_cols=142 Identities=13% Similarity=0.150 Sum_probs=80.5
Q ss_pred ceeEEEEEecCHHHHHHHHHhhcc---cCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-c
Q 042816 6 GFRISVIYSYNNSVLAAAKKLARF---SSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLGI-E 78 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~ 78 (163)
|+-+|.+++ .+++.+.+.....+ ++.|+++-.++.+.|+ +... .+..+++-+.++++.+ +..+++++ .
T Consensus 819 G~Pl~av~~-~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e~l-~~~~~~~G~~l~~~L~---~l~~~~~~i~ 893 (972)
T PRK06149 819 GHPLGAVIT-RREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEKL-QENARRVGDHLKARLE---ALADRHPLIG 893 (972)
T ss_pred CeeeEEEEE-cHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHH---HHHHhCCCeE
Confidence 577899999 89998887642221 3456666665555553 2221 2233333333333333 22233332 2
Q ss_pred cccCCceeEEEeecCCcc--cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLI--SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~ 155 (163)
... .-|+++-+++...- ..+.......+++.+++ +||.+.|. + ...+.+||.-. .+++++++++++++.++
T Consensus 894 ~vr-G~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~-~Gvl~~~~---g-~~~~vl~~~Ppl~it~~~id~~~~~l~~~ 967 (972)
T PRK06149 894 AVH-GMGLYLGVELVRDRQTLEPATEETAAICDRLLE-LGVIMQPT---G-DHLNILKIKPPLCLDRESADFFVDMLDRV 967 (972)
T ss_pred EEe-ecceEEEEEEecCcccCCCChHHHHHHHHHHHh-CCeEEeec---C-CCCCEEEEECCCcCCHHHHHHHHHHHHHH
Confidence 233 33555556653210 00111234578888876 89999874 1 11467888765 24889999999999998
Q ss_pred HHH
Q 042816 156 SQT 158 (163)
Q Consensus 156 ~~~ 158 (163)
+.+
T Consensus 968 l~~ 970 (972)
T PRK06149 968 LTE 970 (972)
T ss_pred HHh
Confidence 864
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.046 Score=43.65 Aligned_cols=144 Identities=11% Similarity=0.020 Sum_probs=77.4
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
.|+-+|.+++ .+++ +.+..... .++.++++-.++.+.|+ +.+. .++.+++-+.+.+..+ +..+++++-.
T Consensus 304 gG~PlsAv~~-~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l-~~~~~~~G~~l~~~L~---~l~~~~~~i~ 377 (464)
T PRK06938 304 GSLPLAVVVY-REWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRL-AEHAAAMGERLREHLR---QLQRDYPQLG 377 (464)
T ss_pred CCCceEEEee-hhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHH---HHHHhCCCee
Confidence 3677899998 6664 44421111 24567777665555554 3221 2333333333333332 3223343222
Q ss_pred ccCCceeEEEeecCCcccC-------C-ChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISS-------Y-SEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVME 150 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~-------~-~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~ 150 (163)
....-|+++-+++...-.. + ...-...+.+.+++ +||.+.++..+ .+.+|+... .+++++++++++
T Consensus 378 ~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~g~~----~~~l~~~Ppl~it~~eid~~~~ 452 (464)
T PRK06938 378 DVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLR-RGLILELGGRH----GSVVRFLPPLIITAEQIDEVAE 452 (464)
T ss_pred eeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHH-CCeEEeecCCC----CCEEEEECCCccCHHHHHHHHH
Confidence 2223355566666321000 0 01123567777776 99999874222 357888743 358899999999
Q ss_pred HHHHHHHHh
Q 042816 151 RIRRISQTC 159 (163)
Q Consensus 151 ~l~~~~~~~ 159 (163)
++.+++.+.
T Consensus 453 ~l~~~l~~~ 461 (464)
T PRK06938 453 IFAEAVAAA 461 (464)
T ss_pred HHHHHHHHH
Confidence 999998764
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.052 Score=42.56 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=41.1
Q ss_pred CCCCceeE-EEEEecCHHHHH-HHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLPGFRI-SVIYSYNNSVLA-AAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~G~Ri-G~~i~~~~~~~~-~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
++..|.++ |++++ +++.+. .++..... ..++++.+.++...|+.- +..++ ...++...+.+.|+++
T Consensus 218 l~g~g~~~gG~v~~-~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~tl---~~R~~----~~~~~a~~~a~~L~~~ 287 (403)
T PRK07810 218 IDGQGRVLGGAILG-DREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETL---ALRVR----HSNASALRIAEFLEGH 287 (403)
T ss_pred ecCCcCceeEEEEe-ChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCcH---HHHHH----HHHHHHHHHHHHHhcC
Confidence 46678887 88888 666554 45544333 357777777777766653 33333 3344566667778776
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.035 Score=43.38 Aligned_cols=133 Identities=13% Similarity=0.095 Sum_probs=72.8
Q ss_pred ceeEEEEEecCHHHHHHHHHhh--cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCcc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLA--RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ----LGIEC 79 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~ 79 (163)
|+-+|.+++ ++++.. +.... ..++.+++...++...|+.- ++ +...+..+++-+++.+.|++ .++..
T Consensus 253 G~p~~av~~-~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l---~~--~~l~~~~~~~g~~l~~~L~~l~~~~~i~~ 325 (395)
T PRK03715 253 GVPLAALLA-KAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQL---LA--PGFLEGVRARGEYLKEKLLELSEERGLEG 325 (395)
T ss_pred CcceEEEEE-cccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHhhcCCcCe
Confidence 577899988 777742 21111 11344555555444444321 10 12333444444444444443 34443
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHH--hcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLN--VAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
.+.. |..+-+++... ....+.+.+.+ ++||.+.+.. ++.+|++... +++++++++++.|.+++
T Consensus 326 vrG~-Glm~~i~l~~~-------~~~~~~~~~~~~~~~Gi~~~~~~------~~~lR~~p~l~~t~~ei~~~~~~l~~~l 391 (395)
T PRK03715 326 ERGE-GLLRALLLGKD-------IGPQIVEKARDMQPDGLLLNAPR------PNLLRFMPALNVTTEEIDQMIAMLRSVL 391 (395)
T ss_pred EEcc-eeEEEEEecCc-------hHHHHHHHHHhccCCCEEEeecC------CCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 3333 45555666531 12333333332 1399986431 3679999864 58899999999999998
Q ss_pred HHh
Q 042816 157 QTC 159 (163)
Q Consensus 157 ~~~ 159 (163)
.++
T Consensus 392 ~~~ 394 (395)
T PRK03715 392 DKL 394 (395)
T ss_pred Hhh
Confidence 764
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.061 Score=42.94 Aligned_cols=141 Identities=9% Similarity=-0.002 Sum_probs=77.3
Q ss_pred eEEEEEecCHHHHHHHHHh----h---c--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 8 RISVIYSYNNSVLAAAKKL----A---R--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~----~---~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
-+|-+++ .+++.+.+... . . .++.++++-.++.+.|+ ++.. .++.+++-+.+. +.+.+.++++
T Consensus 297 Pi~av~~-~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l-~~~~~~~g~~l~---~~L~~l~~~~ 371 (461)
T PRK07482 297 PLSGSIV-GEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENL-VGNAAEVGAYFR---ARLRAAFGDH 371 (461)
T ss_pred ccceeee-cHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHH---HHHHHHHhcC
Confidence 6788888 78888777531 1 1 23567777665555553 3221 222233333322 3333333344
Q ss_pred CCccccCCceeEEEeecCCcc--cCC-Ch--hhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLI--SSY-SE--KGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVM 149 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~--~~~-~~--~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~ 149 (163)
.+-.....-|.++-+++...- +.+ .. .-...++..+++ +||.+.++. ..+.+|+..+ .++++++++++
T Consensus 372 ~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~~-----~~~~i~~~Ppl~it~~ei~~~~ 445 (461)
T PRK07482 372 PLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALE-RGVIARAMP-----HGDILGFAPPLVLTRAEADEIV 445 (461)
T ss_pred CCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHH-CCcEEecCC-----CCCEEEEeCCCCCCHHHHHHHH
Confidence 322222234555566664211 000 00 013567777776 899986532 1356888743 24999999999
Q ss_pred HHHHHHHHHh
Q 042816 150 ERIRRISQTC 159 (163)
Q Consensus 150 ~~l~~~~~~~ 159 (163)
+++.+++.++
T Consensus 446 ~~l~~~l~~~ 455 (461)
T PRK07482 446 AIAKDAVDEV 455 (461)
T ss_pred HHHHHHHHHH
Confidence 9999998765
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.047 Score=43.44 Aligned_cols=140 Identities=6% Similarity=-0.091 Sum_probs=75.8
Q ss_pred eeEEEEEecCHHHHHHHHHhh--c--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCC-
Q 042816 7 FRISVIYSYNNSVLAAAKKLA--R--FSSVSAPSQNLLVSMLS---DTKFVQKFININR-ERLRRLYVKFVAGLRQLGI- 77 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~--~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~g~- 77 (163)
+-+|-+++ .+++.+.+.... . .++.++++-.++.+.|+ +... .++.+++- +.+++..+ +..+++..
T Consensus 290 ~Pigav~~-~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l-~~~~~~~G~~~l~~~L~---~l~~~~~~v 364 (451)
T PRK06062 290 VPLGGVAI-SEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGI-VENAARIGAEVLGPGLR---ELAERHPSV 364 (451)
T ss_pred cCcEEEEE-cHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHH---HHHhcCCcE
Confidence 47888899 889988875321 1 23456666555555543 2221 22222222 22222222 22222222
Q ss_pred ccccCCceeEEEeecCCc-c-cCC--C----hhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGL-I-SSY--S----EKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVV 148 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~-~-~~~--~----~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~ 148 (163)
.-.... |+++-+++... . +.+ . ......+++.|++ +||++.+. .+.+|++... +++++++++
T Consensus 365 ~~vrG~-Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gvl~~~~-------~~~lrl~ppl~~t~~eid~~ 435 (451)
T PRK06062 365 GEVRGL-GVFWALELVADRETREPLAPYGASSAAMAAVKAACKE-RGLLPFVN-------GNRIHVVPPCTVTEDEVREG 435 (451)
T ss_pred EeEecc-ccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHH-CCcEEeec-------CCEEEEECCccCCHHHHHHH
Confidence 122233 44444555321 0 000 0 0124577777776 89998652 2468887743 589999999
Q ss_pred HHHHHHHHHHhh
Q 042816 149 MERIRRISQTCK 160 (163)
Q Consensus 149 ~~~l~~~~~~~~ 160 (163)
++++.+++.++.
T Consensus 436 ~~~l~~~l~~~~ 447 (451)
T PRK06062 436 LAILDAALAVAD 447 (451)
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.099 Score=41.52 Aligned_cols=137 Identities=12% Similarity=0.086 Sum_probs=76.5
Q ss_pred eeEEEEEecCHHHHHHHHHhh-------c--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 7 FRISVIYSYNNSVLAAAKKLA-------R--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~-------~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
+-+|-+++ ++++.+.+.... . .++.+++.-.++.+.|+-- .+ +...+..+++-+++.+.|++. .
T Consensus 291 ~P~gav~~-~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l---~~--~~l~~~~~~~g~~l~~~l~~l~~ 364 (442)
T PRK13360 291 IPMGAVFV-SSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLY---ER--EGLLTRAARLAPYWEDALHSLRD 364 (442)
T ss_pred cceEEEEE-cHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHhhc
Confidence 67889888 889888775321 1 1345666655555544321 11 123334444445555555443 1
Q ss_pred ---CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHH
Q 042816 77 ---IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERI 152 (163)
Q Consensus 77 ---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l 152 (163)
+.-.... |++.-+.+........ ....+++..+++ +||.+.++ .+.+||+... ++++++++++++|
T Consensus 365 ~~~v~~vrG~-Gl~~~~~l~~~~~~~~-~~~~~~~~~l~~-~Gvl~~~~-------~~~lr~~Ppl~~t~~eid~~~~~l 434 (442)
T PRK13360 365 APHVIDIRNL-GLVGAVELAPRDGKPG-KRAYEVFLKCFE-KGLMIRYT-------GDILALSPPLIIEEAQIDELFDIL 434 (442)
T ss_pred CCCeeeeecc-ceEEEEEEecCCCCcc-hhHHHHHHHHHH-CCcEEEec-------CCEEEEeCCCccCHHHHHHHHHHH
Confidence 1112222 3333344422111111 134677777776 89999753 2468998542 4889999999999
Q ss_pred HHHHHHh
Q 042816 153 RRISQTC 159 (163)
Q Consensus 153 ~~~~~~~ 159 (163)
.++++++
T Consensus 435 ~~~l~~~ 441 (442)
T PRK13360 435 AQALKET 441 (442)
T ss_pred HHHHHHh
Confidence 9998764
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.11 Score=40.43 Aligned_cols=66 Identities=12% Similarity=-0.017 Sum_probs=43.9
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
|.++++.|++++.++++++.+...... .+++++.+..+..-++. ...+ .+...++...+.+.|+.+
T Consensus 201 G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~t------l~~R-~~~~~~na~~~a~~L~~~ 268 (382)
T TIGR02080 201 GHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLRT------LVAR-MRLQQRNAQAIVEYLQTQ 268 (382)
T ss_pred CCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccch------HHHH-HHHHHHHHHHHHHHHHhC
Confidence 457899999988678888888777665 34566655555443332 2222 445557788888888876
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.046 Score=43.56 Aligned_cols=140 Identities=10% Similarity=0.021 Sum_probs=77.9
Q ss_pred eeEEEEEecCHHHHHHHHH-hh-----cccCCChHHHHHHHHhcC---ChHHHHHHH-HHHHHHHHHHHHHHHHHhhhcC
Q 042816 7 FRISVIYSYNNSVLAAAKK-LA-----RFSSVSAPSQNLLVSMLS---DTKFVQKFI-NINRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~-~~-----~~~~~s~~~q~~~~~~l~---~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~g 76 (163)
+-+|-+++ ++++.+.+.. .. ..++.++++-.++.+.|+ ++.. .++. +++-+.+.+..+ + +.+++
T Consensus 295 ~Pi~av~~-~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l-~~~~~~~~g~~l~~~l~---~-l~~~~ 368 (456)
T PRK07480 295 IPMGAVGV-GDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGI-VERVRDDTGPYLQKRLR---E-LADHP 368 (456)
T ss_pred ccceEEEE-cHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHH---H-hhcCC
Confidence 36899999 8898887732 11 124567777666665554 2221 2223 233333333332 2 33343
Q ss_pred -CccccCCceeEEEeecCCccc-CCCh----hhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHH
Q 042816 77 -IECAKSNGGFYCWADMSGLIS-SYSE----KGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVM 149 (163)
Q Consensus 77 -~~~~~~~~g~~~~~~~~~~~~-~~~~----~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~ 149 (163)
+.-.... |+++-+++.+.-. .... .....+...+++ +||.+.+. .+.+|++... ++++++++++
T Consensus 369 ~i~~vrG~-Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~-------~~~l~~~Ppl~it~~eid~~~ 439 (456)
T PRK07480 369 LVGEVRGV-GLVGAIELVKDKATRERFEAGGGVGTICRDHCFA-NGLIMRAV-------GDRMIISPPLVITHAEIDELV 439 (456)
T ss_pred CeeeEEee-cceEEEEEeccccccccCcchhhHHHHHHHHHHH-CCcEEeec-------CCEEEEECCCCCCHHHHHHHH
Confidence 2222333 4555556532100 0000 012456666665 89999752 1468888654 4889999999
Q ss_pred HHHHHHHHHhhh
Q 042816 150 ERIRRISQTCKS 161 (163)
Q Consensus 150 ~~l~~~~~~~~~ 161 (163)
++|.+++.++++
T Consensus 440 ~~l~~al~~~~~ 451 (456)
T PRK07480 440 EKARKALDATAA 451 (456)
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.048 Score=43.02 Aligned_cols=129 Identities=12% Similarity=0.056 Sum_probs=75.5
Q ss_pred eeEEEEEecCHHHHHHHHHh--------hcccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 042816 7 FRISVIYSYNNSVLAAAKKL--------ARFSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQ- 74 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~--------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~- 74 (163)
+-+|.+++ ++++.+.+... ...++.+++.-.++.+.|+ +... .++..++ -+++.+.|+.
T Consensus 277 ~p~~av~~-~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~-~~~~~~~-------g~~l~~~L~~l 347 (422)
T PRK05630 277 MSFAATLC-TDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMW-RKQVKRI-------EAELIAGLSPL 347 (422)
T ss_pred cccceeec-cHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcH-HHHHHHH-------HHHHHHHHHHh
Confidence 57899999 89998887532 1123455656555554443 3222 2233333 3333333332
Q ss_pred --c-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHH
Q 042816 75 --L-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVME 150 (163)
Q Consensus 75 --~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~ 150 (163)
+ .+.-.+.. |.++-+++... .+...+.+.+++ +||++.+. .+.+|+.... +++++++++++
T Consensus 348 ~~~~~v~~vRg~-Gl~~~ie~~~~------~~~~~~~~~~~~-~Gl~~~~~-------g~~l~~~PpL~it~~~i~~~~~ 412 (422)
T PRK05630 348 AHLPGVADVRVL-GAIGVVEMEQP------VDMEEATQAAVD-HGVWLRPF-------GRLVYVMPPYITTSEQIAQICA 412 (422)
T ss_pred hcCCCeeeeecc-ccEEEEEECCc------ccHHHHHHHHHH-CCeEEEec-------CCEEEEECCccCCHHHHHHHHH
Confidence 2 22222222 55555666431 134577777776 89999762 1578887753 48899999999
Q ss_pred HHHHHHHHh
Q 042816 151 RIRRISQTC 159 (163)
Q Consensus 151 ~l~~~~~~~ 159 (163)
++.+++...
T Consensus 413 ~l~~al~~~ 421 (422)
T PRK05630 413 ALAAAVKAK 421 (422)
T ss_pred HHHHHHhcc
Confidence 999988653
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.11 Score=41.40 Aligned_cols=137 Identities=12% Similarity=0.075 Sum_probs=77.1
Q ss_pred eeEEEEEecCHHHHHHHHHh-------hc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 7 FRISVIYSYNNSVLAAAKKL-------AR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~-------~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
+-+|.+++ ++++.+.+..- .. .++.+++.-.++.+.|+.- .+ +...+..++.-+++.+.|+++ +
T Consensus 294 ~Pi~av~~-~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i---~~--~~l~~~~~~~g~~l~~~l~~l~~ 367 (445)
T PRK09221 294 IPMGAVIA-SDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIY---RE--EDLFERAAELAPYFEDAVHSLKG 367 (445)
T ss_pred ccceeeEE-cHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHhhcc
Confidence 56899888 88888877531 11 1345555554444444321 11 123344445555555555543 2
Q ss_pred ---CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHH
Q 042816 77 ---IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERI 152 (163)
Q Consensus 77 ---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l 152 (163)
+.-.+.. |+.+-+++........ .....+.+.+++ +||.+.++ .+.+|++... ++++++++++++|
T Consensus 368 ~~~v~~vrg~-Gl~~~v~~~~~~~~~~-~~~~~~~~~~~~-~Gv~~~~~-------~~~lr~~Ppl~~t~~eid~~~~~l 437 (445)
T PRK09221 368 LPHVIDIRNI-GLVAGIELAPRPGAPG-ARGYEAFMKCFE-KGLLVRYT-------GDTIALSPPLIIEKAQIDELVDAL 437 (445)
T ss_pred CCCEEEEecC-ceEEEEEEeccccccc-chHHHHHHHHHH-CCeEEeec-------CCEEEEECCccCCHHHHHHHHHHH
Confidence 1112223 3444455532110001 134577887776 89999753 2579998543 4889999999999
Q ss_pred HHHHHHh
Q 042816 153 RRISQTC 159 (163)
Q Consensus 153 ~~~~~~~ 159 (163)
.+++.++
T Consensus 438 ~~~l~~~ 444 (445)
T PRK09221 438 GDALRAV 444 (445)
T ss_pred HHHHHhh
Confidence 9998764
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.14 Score=39.78 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=40.5
Q ss_pred CCCCceeE-EEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLPGFRI-SVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~G~Ri-G~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
++.+|.++ |++++ ++++++.+....... +.+++...++..-++. +....+...++...+.+.|+++
T Consensus 202 l~g~g~~~gG~vv~-~~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~t-------l~~r~~~~~~~a~~la~~L~~~ 270 (380)
T TIGR01325 202 IDGQGRVMGGVIAG-SEELMAEVAVYLRHTGPAMSPFNAWVLLKGLET-------LSLRMQKQFDSALAIAEWLQAQ 270 (380)
T ss_pred ecCCCCeEEEEEEe-CHHHHHHHHHHHHhhCCCCCHHHHHHHHhccCc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 46677787 77887 888888887765533 2343433333222222 3334555666777888888887
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.066 Score=42.73 Aligned_cols=144 Identities=8% Similarity=0.009 Sum_probs=77.1
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
|+-+|.+++ .+++ +.+..... .++.++++..++.+.|+ +... .++.+++-+.+++..+ +..+++++-..
T Consensus 299 G~Pi~av~~-~~~~-~~~~~~~~~~T~~gnpla~aaala~L~~l~~~~l-~~~~~~~G~~l~~~L~---~l~~~~~~i~~ 372 (459)
T PRK06931 299 GLPLAVLGI-KKEF-DAWQPGGHTGTFRGNQLAMATGLTTLKILKEENL-AQNAAERGEWLKAQLA---ELQKRYPCIGN 372 (459)
T ss_pred Ccceeeeee-HHHH-hhccCCCCCCCCCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHH---HHHHhCCCeEe
Confidence 567887777 5553 55432111 24567777665555553 3222 2333444444333333 33333432122
Q ss_pred cCCceeEEEeecCCc--cc-----CC-ChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGL--IS-----SY-SEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMER 151 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~--~~-----~~-~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~ 151 (163)
.-.-|.++-+++... .. .+ ...-...+...+++ +||.+.|+..+ .+.+|+..+. ++++++++++++
T Consensus 373 vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~~~----~~~l~~~Ppl~it~~eid~~~~~ 447 (459)
T PRK06931 373 VRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFE-NGLLLERGGRN----GNVVRLLPPLLITQAECEEFIDR 447 (459)
T ss_pred EecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHH-CCcEEeecCCC----CCEEEEECCCCcCHHHHHHHHHH
Confidence 223355555565321 00 00 01123456677776 89999874221 3678877754 488999999999
Q ss_pred HHHHHHHhh
Q 042816 152 IRRISQTCK 160 (163)
Q Consensus 152 l~~~~~~~~ 160 (163)
+.+++.+.-
T Consensus 448 l~~~l~~~~ 456 (459)
T PRK06931 448 FEQALLAAV 456 (459)
T ss_pred HHHHHHHHH
Confidence 999987643
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.14 Score=40.03 Aligned_cols=66 Identities=9% Similarity=0.120 Sum_probs=42.6
Q ss_pred CCCCceeE-EEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLPGFRI-SVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~G~Ri-G~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
+|.+|.++ ||++. ++++++.+...... .+.+++.+..+..-++.- ....+...++...+.+.|+++
T Consensus 212 l~g~~~~~gG~vv~-~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~tL-------~~R~~~~~~na~~la~~L~~~ 280 (398)
T PRK08249 212 LSGHADALGGVVCG-SKELMEQVYHYREINGATMDPMSAYLILRGMKTL-------KLRVRQQQESAMALAKYLQTH 280 (398)
T ss_pred cCCCCCceEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcchH-------HHHHHHHHHHHHHHHHHHHcC
Confidence 45566666 66666 88999988877664 345666666555554432 233344456777888888876
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.033 Score=43.50 Aligned_cols=87 Identities=11% Similarity=0.029 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-----CCccccCC-----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQL-----GIECAKSN-----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGS 123 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-----g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~ 123 (163)
+++.+++..+..+++.+.|++. |+++..|. +++ +.+.++ . +..++.+.|.+ +||.+...
T Consensus 307 ~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~-v~~~~~--~------~~~~~~~~L~~-~gi~v~~~- 375 (406)
T TIGR01814 307 MEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQ-LSLTHP--V------PGKAVFQALIK-RGVIGDKR- 375 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCe-EEEEec--C------CHHHHHHHHHH-CCEEEecc-
Confidence 3566677777777787777664 35554432 233 344555 1 45788888865 79987531
Q ss_pred CCCCCCCceEEEEEe--cCChhHHHHHHHHHHHHH
Q 042816 124 SCHCIEPGWFSFSFT--LLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 124 ~f~~~~~~~iRi~~~--~~~~~~l~~~~~~l~~~~ 156 (163)
.++.+|+|++ ..+.++++.+++.|.+++
T Consensus 376 -----~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 376 -----EPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred -----CCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 2469999984 458899999999888754
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.084 Score=41.76 Aligned_cols=131 Identities=7% Similarity=0.059 Sum_probs=76.9
Q ss_pred eEEEEEecCHHHHHHHHHhh-----c--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 8 RISVIYSYNNSVLAAAKKLA-----R--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~-----~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
-+|-+++ ++++.+.+.... . .+..+++.-.++.+.|+-- ++ +...+...++-+++.+.|++. +...
T Consensus 284 p~~a~~~-~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i---~~--~~~~~~~~~~g~~l~~~L~~~~~~~~ 357 (429)
T PRK06173 284 TLSATIT-TEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLL---LE--SPWQQNIQRIEAQLKQELAPAAEFDS 357 (429)
T ss_pred ccceEEe-cHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 4667777 788888775311 1 1234555555554444321 11 122444455555555555543 2221
Q ss_pred c---cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 80 A---KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 80 ~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
. +. -|+.+-+.+.... +...+++.|.+ +||.+.+. .+.+|+.... ++++++++++++|.++
T Consensus 358 v~~vRg-~Gl~~~iel~~~~------~~~~i~~~l~e-~Gi~v~~~-------g~~l~~~Ppl~it~~ei~~~~~~l~~~ 422 (429)
T PRK06173 358 VAEVRV-LGAIGVVEMKEPV------NMATLQPRFVE-HGIWVRPF-------GKLVYIMPPFIISPDELSQLTSGLLRV 422 (429)
T ss_pred eeeeec-cceEEEEEeCCcc------cHHHHHHHHHH-CCeEEEec-------CCEEEEeCCccCCHHHHHHHHHHHHHH
Confidence 1 12 3555556664321 35678887876 89999763 1478888754 4889999999999999
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+.+.
T Consensus 423 l~~~ 426 (429)
T PRK06173 423 LKQE 426 (429)
T ss_pred HHHH
Confidence 8764
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.11 Score=41.40 Aligned_cols=138 Identities=13% Similarity=0.094 Sum_probs=76.8
Q ss_pred c-eeEEEEEecCHHHHHHHHHhh------c--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042816 6 G-FRISVIYSYNNSVLAAAKKLA------R--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLR 73 (163)
Q Consensus 6 G-~RiG~~i~~~~~~~~~~~~~~------~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 73 (163)
| +-+|.+++ .+++.+.+..-. . .++.+++.-.++.+.|+ +.+. -+..+++-+.+.+..+.+ .
T Consensus 296 G~~Pi~av~~-~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l-~~~~~~~G~~l~~~L~~l----~ 369 (453)
T PRK06943 296 GYLPLSLVLS-RDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDV-LARNARKSARLRAALAPL----A 369 (453)
T ss_pred CcccceEEEE-cHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHH----h
Confidence 5 47888999 889988775311 1 23456666555554443 3322 233333333333333322 2
Q ss_pred hc-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHH
Q 042816 74 QL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMER 151 (163)
Q Consensus 74 ~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~ 151 (163)
++ ++.-.+. -|+++-+++...- .........+.+.+++ +||.+.|. + +.+|++... ++++++++++++
T Consensus 370 ~~~~v~~vrG-~Gl~~gvel~~~~-~~~~~~~~~i~~~~~~-~Gll~~~~---g----~~l~~~Ppl~it~~eid~~~~~ 439 (453)
T PRK06943 370 AHPQVRHLRQ-RGTIFAFDVALDG-DAARTFSRRFFEAALE-RELLLRPI---G----TTVYLMPPYVLDDDEIAWLAER 439 (453)
T ss_pred cCCCEEeEec-cccEEEEEEccCC-CcchHHHHHHHHHHHH-CCcEEEec---C----CEEEEeCCCcCCHHHHHHHHHH
Confidence 22 3332333 3445555654210 0011124567777776 89999763 1 358888332 388999999999
Q ss_pred HHHHHHHh
Q 042816 152 IRRISQTC 159 (163)
Q Consensus 152 l~~~~~~~ 159 (163)
+.+++.++
T Consensus 440 l~~al~~~ 447 (453)
T PRK06943 440 TRATLDAT 447 (453)
T ss_pred HHHHHHHH
Confidence 99998765
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.14 Score=40.86 Aligned_cols=141 Identities=8% Similarity=0.046 Sum_probs=74.8
Q ss_pred eeEEEEEecCHHHHHHHHHhh--cccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ccc
Q 042816 7 FRISVIYSYNNSVLAAAKKLA--RFSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLGI-ECA 80 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~~~ 80 (163)
+-+|.+++ .+++.+.+.... ..++.++++-.++.+.|+ +++. .++.+++-+.+++..+ +..+++++ .-.
T Consensus 304 ~P~~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l-~~~~~~~g~~l~~~L~---~l~~~~~~i~~v 378 (459)
T PRK06082 304 VPIAAMIT-KDKYNTAAQISLGHYTHEKSPLGCAAALATIEVIEQEGL-LEKVKADSQFMRERLL---EMKAKYPLIGDV 378 (459)
T ss_pred CcceEEEE-cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHH---HHHhhCCCeeee
Confidence 47888888 777654432111 123456666555544443 2221 2333333333333222 22222332 222
Q ss_pred cCCceeEEEeecCCcc--cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLI--SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
... |.++-+++...- ..........+...+++ +||.+.|. + .+.+|++... +++++++++++++.+++.
T Consensus 379 rG~-Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~---~---~~~i~~~Ppl~it~~eid~~~~~l~~~l~ 450 (459)
T PRK06082 379 RGI-GLLWGVELVTDRHTKERAYDEAEAVLYRCLN-NGLSFKVS---Q---GNVIQLSPPLIITREELTQALAILEEAIA 450 (459)
T ss_pred eec-cceeEEEEccCccccCccHHHHHHHHHHHHh-CCCEEEec---C---CCEEEEeCCCccCHHHHHHHHHHHHHHHH
Confidence 333 455556664210 01111124566777776 89998763 1 3678888642 488999999999999987
Q ss_pred Hhh
Q 042816 158 TCK 160 (163)
Q Consensus 158 ~~~ 160 (163)
++.
T Consensus 451 ~~~ 453 (459)
T PRK06082 451 KIC 453 (459)
T ss_pred HHh
Confidence 764
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.078 Score=43.20 Aligned_cols=97 Identities=10% Similarity=0.096 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcccc-CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC---CCC
Q 042816 55 NINRERLRRLYVKFVAGLRQLGIECAK-SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC---IEP 130 (163)
Q Consensus 55 ~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~---~~~ 130 (163)
....+...+|.+.|.+.|.+.|+++.. ..-+-.+|+|+.... .+.....+ +++..||.+..-.-++. ..+
T Consensus 434 k~Ya~QVv~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g-----~~G~~ae~-~Le~~~I~~Nkn~iP~d~~~~~p 507 (586)
T PLN02271 434 KAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLG-----LTGKNYEK-VCEMCHITLNKTAIFGDNGTISP 507 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccC-----CCHHHHHH-HHHHcCeEeccccCCCCCCCCCC
Confidence 344445556899999999999988753 333445788885421 13444444 55668999864332221 126
Q ss_pred ceEEEEEec-----CChhHHHHHHHHHHHHHH
Q 042816 131 GWFSFSFTL-----LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 131 ~~iRi~~~~-----~~~~~l~~~~~~l~~~~~ 157 (163)
+.+||.... ..++++++..+.|.++++
T Consensus 508 sGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 508 GGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 789998754 345677776666666654
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.23 Score=38.97 Aligned_cols=64 Identities=9% Similarity=-0.100 Sum_probs=44.7
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
.++..|++++.++++.+.+...... .+++++.+.++...+ ++++...+...++...+.+.|+++
T Consensus 212 ~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl-------~tl~~r~~~~~~na~~la~~L~~~ 277 (405)
T PRK08776 212 SDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGL-------RTLDARLRVHQENADAIAALLDGH 277 (405)
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh-------CcHHHHHHHHHHHHHHHHHHHHcC
Confidence 3588999988678888888765553 346666666555433 334666677777888888888876
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.22 Score=38.94 Aligned_cols=66 Identities=17% Similarity=0.150 Sum_probs=40.7
Q ss_pred CCCCcee-EEEEEecCHHHHHHHHHhhc--cc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLPGFR-ISVIYSYNNSVLAAAKKLAR--FS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~G~R-iG~~i~~~~~~~~~~~~~~~--~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
+|.+|.+ .|++++ ++++++.++.... .. ..+++....+...|+.- ....+...++...+.+.|+++
T Consensus 207 lgg~g~~~gG~v~~-~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~tl-------~~r~~~~~~na~~la~~L~~~ 277 (391)
T TIGR01328 207 IGGHGDVVAGLICG-KAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTL-------NIRMKRHSENAMKVAEYLKSH 277 (391)
T ss_pred ccCCCCceEEEEEc-CHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCcH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 5778877 477777 8999888876432 22 34444444444444432 233455566777788888776
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.049 Score=43.07 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=40.3
Q ss_pred eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 85 GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
|.++.++++.. .....+++.|++ +||.+.|.. .+.+|++... +++++++++++.|.+
T Consensus 373 G~~~~i~~~~~------~~~~~~~~~l~~-~Gvl~~~~g------~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 373 GLMCAFDLPST------ADRDEVIRQLYR-EGVLLLGCG------ERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred ceeEEEEeCCH------HHHHHHHHHHHh-CCeEEecCC------CCeEEEECCccCCHHHHHHHHHHHHh
Confidence 55666677642 134578888876 899997742 3568877653 488999999998875
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.073 Score=42.08 Aligned_cols=130 Identities=9% Similarity=0.010 Sum_probs=73.8
Q ss_pred eEEEEEecCHHHHHHHHHhh-------cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----C
Q 042816 8 RISVIYSYNNSVLAAAKKLA-------RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----G 76 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~-------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g 76 (163)
-+|-+++ ++++.+.+.... ..++.++++-.++.+.|+.- ++ +...+..+++-+++.+.|+++ .
T Consensus 282 p~~av~~-~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i---~~--~~~~~~~~~~g~~l~~~l~~l~~~~~ 355 (428)
T PRK07986 282 TLSATLT-TREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLL---ES--GDWQQQVAAIEAQLREELAPLRDAPM 355 (428)
T ss_pred cCcchhc-hHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5566677 788888886521 12345666655555444321 10 012333333344444444432 2
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
+.-.+.. |.++-+.+... .+...+.+.+++ +||++.|. .+.+|+.... ++++++++++++|.++
T Consensus 356 i~~vRg~-Gl~~~ve~~~~------~~~~~~~~~l~~-~Gl~~~~~-------g~~i~~~Ppl~it~~ei~~~~~~l~~~ 420 (428)
T PRK07986 356 VADVRVL-GAIGVVETTRP------VNMAALQRFFVE-QGVWIRPF-------GKLIYLMPPYIILPEQLQRLTAAVNRA 420 (428)
T ss_pred EEeEecc-ceEEEEEeCCc------ccHHHHHHHHHH-CCcEEEec-------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2222222 44455555432 135678888876 89999763 1478886542 4899999999999998
Q ss_pred HHH
Q 042816 156 SQT 158 (163)
Q Consensus 156 ~~~ 158 (163)
+..
T Consensus 421 l~~ 423 (428)
T PRK07986 421 VQD 423 (428)
T ss_pred Hhh
Confidence 864
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.23 Score=39.72 Aligned_cols=141 Identities=12% Similarity=0.109 Sum_probs=77.6
Q ss_pred c-eeEEEEEecCHHHHHHHHHh-------hc--ccCCChHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042816 6 G-FRISVIYSYNNSVLAAAKKL-------AR--FSSVSAPSQNLLVSML---SDTKFVQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 6 G-~RiG~~i~~~~~~~~~~~~~-------~~--~~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
| +-+|.+++ ++++.+.+..- .. .++.++++-.++.+.| ++++. -++.+++-+.+.+..+.+
T Consensus 289 G~~Pi~av~~-~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l-~~~~~~~g~~l~~~l~~l---- 362 (459)
T PRK05965 289 GYVPMGAVLM-SDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGL-LANGQKAGPRFAAGLDAL---- 362 (459)
T ss_pred CCcceeEEEE-cHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHhh----
Confidence 5 47999999 89998877531 11 2355666665555444 33322 233333333333332221
Q ss_pred hhcC-CccccCCceeEEEeecCCcc--cCC-C--hhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHH
Q 042816 73 RQLG-IECAKSNGGFYCWADMSGLI--SSY-S--EKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDI 145 (163)
Q Consensus 73 ~~~g-~~~~~~~~g~~~~~~~~~~~--~~~-~--~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l 145 (163)
.++. +.-.+.. |+++-+++...- +.+ . ..-...+.+.+++ +||.+.+. + .+.+|+.... ++++++
T Consensus 363 ~~~~~v~~vrG~-Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gll~~~~---g---~~~i~~~PpL~it~~ei 434 (459)
T PRK05965 363 RAHPLVGDVRGR-GLLGALELVADKATKTPFDAALDPADRIFDRAYA-NGLVFRAF---G---DGVLGFAPALCCTEGEF 434 (459)
T ss_pred ccCCCEEEEeec-ceEEEEEEeccccccCCCCchhHHHHHHHHHHHh-CCeEEEec---C---CcEEEEECCCcCCHHHH
Confidence 2232 2222333 444555553210 000 0 0123567777776 89999752 1 4678888543 488999
Q ss_pred HHHHHHHHHHHHHhh
Q 042816 146 HVVMERIRRISQTCK 160 (163)
Q Consensus 146 ~~~~~~l~~~~~~~~ 160 (163)
+++++++.+++.++.
T Consensus 435 ~~~~~~l~~~l~~~~ 449 (459)
T PRK05965 435 DLIFERTRKTLDDVL 449 (459)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.1 Score=41.81 Aligned_cols=141 Identities=12% Similarity=0.150 Sum_probs=72.3
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--c---cCCChHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--F---SSVSAPSQNLLVSML---SDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~---~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
.|+-+|.+++ ++++.+.+..... . ++.+++...++.+.| ++++. .++++++-+.+ ++.|.+...++|
T Consensus 318 gG~Pigav~g-~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~-~~~~~~~g~~l---~~~L~~l~~~~g 392 (474)
T PLN02482 318 GGLPVGAYGG-RREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGT-YEYLDKITKKL---IQGILEAGKKAG 392 (474)
T ss_pred CCCceEEEEE-cHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCH-HHHHHHHHHHH---HHHHHHHHHhcC
Confidence 3677899988 8999988863222 1 234566655444443 33211 22222222222 222333333334
Q ss_pred Cccc-cCCceeEEEeecCC-ccc------CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHH
Q 042816 77 IECA-KSNGGFYCWADMSG-LIS------SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVV 148 (163)
Q Consensus 77 ~~~~-~~~~g~~~~~~~~~-~~~------~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~ 148 (163)
..+. ..-+|++ -+.+.. ... ..+......+++.+++ +||++.|.. +.. ++ +++.. +++++++.
T Consensus 393 ~~~~~~~v~g~~-gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~-~Gv~~~~~~-~~~---~~--psl~h-t~~dId~~ 463 (474)
T PLN02482 393 HEMCGGYISGMF-GFFFTEGPVYNFADAKKSDTAKFARFHRGMLE-EGVYLAPSQ-FEA---GF--TSLAH-TEEDIDFT 463 (474)
T ss_pred CCEEEcccceEE-EEEEecCCccChhhhccCCHHHHHHHHHHHHH-CCeEEeccC-CCC---Cc--CCCCC-CHHHHHHH
Confidence 4433 2223433 122211 000 0111123567777876 899998732 111 11 45454 88999999
Q ss_pred HHHHHHHHHHh
Q 042816 149 MERIRRISQTC 159 (163)
Q Consensus 149 ~~~l~~~~~~~ 159 (163)
++.+.+++.++
T Consensus 464 l~al~~~l~~~ 474 (474)
T PLN02482 464 IAAAERVLARI 474 (474)
T ss_pred HHHHHHHHHhC
Confidence 99999988653
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.19 Score=40.29 Aligned_cols=139 Identities=9% Similarity=0.019 Sum_probs=77.9
Q ss_pred eeEEEEEecCHHHHHHHHHh-------hc--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 7 FRISVIYSYNNSVLAAAKKL-------AR--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~-------~~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+-+|.+++ ++++.+.+..- .. .++.+++.-.++.+.|+ ++.. .+..+++-+.+++..+. +++
T Consensus 297 ~Pi~av~~-~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l-~~~~~~~g~~l~~~L~~----l~~ 370 (466)
T PRK07036 297 QPLGAVII-SERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGL-CEHVREVGPYFEERLAS----LRE 370 (466)
T ss_pred cccEEEEE-cHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHH----hcc
Confidence 46899999 89998887531 11 23456666655555443 3222 34444444444443332 233
Q ss_pred cCCccccCCceeEEEeecCCcc-cC-C---ChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHH
Q 042816 75 LGIECAKSNGGFYCWADMSGLI-SS-Y---SEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVV 148 (163)
Q Consensus 75 ~g~~~~~~~~g~~~~~~~~~~~-~~-~---~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~ 148 (163)
+.+-.....-|.++.+++...- .. + .......+...+++ +||.+.|. + +.+|++... +++++++++
T Consensus 371 ~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~---~----~~~~l~Ppl~it~~~id~~ 442 (466)
T PRK07036 371 LPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQE-RGLLVRPL---E----HLCVLSPPLIITRAQIDEI 442 (466)
T ss_pred CCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHH-CCcEEeec---C----CEEEEeCCCcCCHHHHHHH
Confidence 3322222233555666663211 00 0 00123567777776 89999763 1 357777442 488999999
Q ss_pred HHHHHHHHHHh
Q 042816 149 MERIRRISQTC 159 (163)
Q Consensus 149 ~~~l~~~~~~~ 159 (163)
++++.+++.++
T Consensus 443 ~~~l~~al~~~ 453 (466)
T PRK07036 443 VAILRAAIEET 453 (466)
T ss_pred HHHHHHHHHHH
Confidence 99998888765
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.22 Score=38.83 Aligned_cols=66 Identities=11% Similarity=0.011 Sum_probs=40.1
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
+|...|++++.++++++.+......++.+...+.+.. .+..- +.+....+...++...+.+.|+++
T Consensus 205 ~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l-~~~gl----~tl~~R~~~~~~~a~~la~~L~~~ 270 (390)
T PRK08064 205 SDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWL-VLRGL----KTLHVRLEHSSETANKIALYLQEH 270 (390)
T ss_pred ccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHccc----CcHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456677777467899999888776665544444333 22221 223444455566777788888776
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.24 Score=39.57 Aligned_cols=143 Identities=7% Similarity=-0.007 Sum_probs=73.2
Q ss_pred eEEEEEecCHHHHHHHHHhhc------ccCCChHHHHHHHHhcCChHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccc
Q 042816 8 RISVIYSYNNSVLAAAKKLAR------FSSVSAPSQNLLVSMLSDTKFVQKFININR-ERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~~------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
-+|-+++ .+++.+.+..... .++.++++-.++.+.|+--+. +..+++.+ +.-...++.+.+...++++-..
T Consensus 299 Piga~v~-~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~-~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~ 376 (460)
T PRK12403 299 PMGGLVL-SKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRD-EGVVTRVKDDTGPYLQRCLREVFGDHPLVGE 376 (460)
T ss_pred ceEEEEE-CHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHhcCCCEEe
Confidence 6788888 8888888753211 123566665555554432100 11222222 2222222333333334432222
Q ss_pred cCCceeEEEeecCCc--ccCC-Ch--hhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGL--ISSY-SE--KGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~--~~~~-~~--~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
...-|.++-+++... ...+ .. .....+...+++ +||.+.+. .+.+|++... +++++++++++.+.+
T Consensus 377 vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~-------~~~~~l~Ppl~it~~eid~~~~~l~~ 448 (460)
T PRK12403 377 VQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFE-EGVIIRST-------LGRMIMAPALVAGRAEIDELVDKTRI 448 (460)
T ss_pred EeecceEEEEEEccCccccccccchhHHHHHHHHHHHh-CCEEEEec-------CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 223345555565321 1000 00 012334455565 89999752 1347776653 488999999999999
Q ss_pred HHHHhh
Q 042816 155 ISQTCK 160 (163)
Q Consensus 155 ~~~~~~ 160 (163)
++.++.
T Consensus 449 al~~~~ 454 (460)
T PRK12403 449 AVDRTA 454 (460)
T ss_pred HHHHHH
Confidence 998874
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.11 Score=40.88 Aligned_cols=147 Identities=16% Similarity=0.074 Sum_probs=80.6
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc-----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF-----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~-----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
.|+-+|.+-+ .+++.+.+.-.... ++-|+++..+....++.-.--+...+++.+.=.+..+-+.+.+.++|+.+
T Consensus 272 GGlP~ga~gG-r~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~ 350 (432)
T COG0001 272 GGLPIGAFGG-RAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPL 350 (432)
T ss_pred CCcceeeecc-HHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 4677777777 78888866554431 34566666655554442110001223333333333444445555556554
Q ss_pred c--cCCceeEEEeec-CC-cc----cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHH
Q 042816 80 A--KSNGGFYCWADM-SG-LI----SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMER 151 (163)
Q Consensus 80 ~--~~~~g~~~~~~~-~~-~~----~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~ 151 (163)
. ...+-|-++..- +. -. ..+. ..-..+...+++ +||++.|+. | +..-+|... ++++++..++.
T Consensus 351 ~v~~~gsm~~i~F~~~~~~n~~da~~sd~-~~~~~~~~~~l~-~GV~l~ps~-~-----ea~flS~ah-te~di~~~~~a 421 (432)
T COG0001 351 TVNRVGSMFGIFFTEEGVRNYADAKRSDV-ERFAKFFHHLLN-RGVYLAPSQ-F-----EAGFLSTAH-TEEDIDRTLEA 421 (432)
T ss_pred EEeeecceEEEEecCCCCCCHHHHHhhch-HHHHHHHHHHHh-CCcccCCcc-c-----cceeeeccc-CHHHHHHHHHH
Confidence 4 333322233221 11 00 0111 134456667887 899999864 2 234567665 99999999999
Q ss_pred HHHHHHHhhh
Q 042816 152 IRRISQTCKS 161 (163)
Q Consensus 152 l~~~~~~~~~ 161 (163)
+.+++.++..
T Consensus 422 ~~~~~~~~~~ 431 (432)
T COG0001 422 ADEAFKELAG 431 (432)
T ss_pred HHHHHHHhhc
Confidence 9999887754
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.11 Score=41.00 Aligned_cols=41 Identities=10% Similarity=0.177 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 106 ELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 106 ~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
.+.+.+++ +||.+.| ++|+.. ++++++++.++.+.+++..+
T Consensus 366 ~~~~~l~~-~Gi~~p~-----------l~is~~-ht~~dId~~l~~l~~~l~~~ 406 (431)
T PRK06209 366 LFLQETIR-RGVLMPS-----------LVVSYA-HGDADIERTIDAVHGALGVY 406 (431)
T ss_pred HHHHHHHH-CCccccc-----------cccccc-CCHHHHHHHHHHHHHHHHHH
Confidence 67777776 8997622 567744 49999999999999988776
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.21 Score=38.31 Aligned_cols=139 Identities=10% Similarity=0.060 Sum_probs=87.0
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHh-hc--------------ccCCChHHHHHHHHhcC----ChHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKL-AR--------------FSSVSAPSQNLLVSMLS----DTKFVQKFININRERLR 62 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~-~~--------------~~~~s~~~q~~~~~~l~----~~~~~~~~~~~~~~~~~ 62 (163)
+|-.| ++.+|. .+++++..... .. +.+++.+.-..+...++ .+. ++.+.+.-.
T Consensus 202 lGpaG--ltvvIv-r~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GG-----l~~~~~rn~ 273 (365)
T COG1932 202 LGPAG--LTVVIV-RPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGG-----LEALEARNQ 273 (365)
T ss_pred cCccc--eEEEEE-cHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHH
Confidence 56677 899999 88888888665 11 11334444443333332 222 356666777
Q ss_pred HHHHHHHHHhhhcCCcc----ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe
Q 042816 63 RLYVKFVAGLRQLGIEC----AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT 138 (163)
Q Consensus 63 ~~~~~l~~~l~~~g~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~ 138 (163)
++.+.|++.+++.++.- ....+-+.+.+++... +-+..|...+.+ +|+...-|.. ..+.+|+++-
T Consensus 274 ~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~~------~ld~~fv~eae~-~gl~~lkGhr----~vgGmRasiy 342 (365)
T COG1932 274 AKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVDA------ELDKGFVAEAEA-AGLIYLKGHR----SVGGLRASIY 342 (365)
T ss_pred HHHHHHHHHHHhCCccccccchhhccceeEEEEcCcH------HHHHHHHHHHHH-cCCceecccc----CCCceeeeee
Confidence 78999999998874211 1345556666676542 245777777766 7777776621 2345999996
Q ss_pred c-CChhHHHHHHHHHHHHHHHh
Q 042816 139 L-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 139 ~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
. .+.|.++..++-|..+.+++
T Consensus 343 nA~~~e~veaL~~fm~~f~~~~ 364 (365)
T COG1932 343 NAVPLEDVEALTDFMDWFEETY 364 (365)
T ss_pred cCCCHHHHHHHHHHHHHHHHhh
Confidence 4 57778777777666665543
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.17 Score=38.19 Aligned_cols=101 Identities=13% Similarity=-0.007 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCccccC----CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC
Q 042816 52 KFININRERLRRLYVKFVAGLRQLGIECAKS----NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC 127 (163)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~ 127 (163)
+=++.....+++..+.++..|+++|++.... .-.----+.+|..+ |-.+++.++..+.++-+..|-. .
T Consensus 278 eGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gv------Dw~dVv~~~~~~~~vei~gglg--~ 349 (385)
T KOG2862|consen 278 EGLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGV------DWKDVVAYAMSHYVVEIGGGLG--P 349 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCC------CHHHHHHHHHHhcCEEeccccC--C
Confidence 3356777788889999999999987543211 11111125667665 8899999998855777665433 2
Q ss_pred CCCceEEEEEecC--ChhHHHHHHHHHHHHHHHhh
Q 042816 128 IEPGWFSFSFTLL--TEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 128 ~~~~~iRi~~~~~--~~~~l~~~~~~l~~~~~~~~ 160 (163)
..+..+||.+..+ +.|.++..++.|+..+.+.+
T Consensus 350 ~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~~~ 384 (385)
T KOG2862|consen 350 TVGKVFRIGLLGCNANVEYIDNVVELLKLALQRKK 384 (385)
T ss_pred CcccEEEEEEeeccCCcHHHHHHHHHHHHHHhhcc
Confidence 3378999998553 66789999999988887654
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.29 Score=39.19 Aligned_cols=139 Identities=12% Similarity=0.096 Sum_probs=77.7
Q ss_pred c-eeEEEEEecCHHHHHHHHHh-------hc--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042816 6 G-FRISVIYSYNNSVLAAAKKL-------AR--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 6 G-~RiG~~i~~~~~~~~~~~~~-------~~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
| +-+|.+++ ++++.+.+..- .. .++.+++.-.++.+.|+ +.+. -++.+++-+.+++..+.+
T Consensus 289 G~~Pi~av~~-~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l-~~~~~~~G~~l~~~L~~l---- 362 (466)
T PRK07030 289 GYLPLAAVLT-TDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNV-IENNRALARRMAEATAHL---- 362 (466)
T ss_pred CcccceEEEe-cHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHH----
Confidence 5 47899999 89998877531 11 23456777665555543 3221 233333333333333322
Q ss_pred hhc-CCccccCCceeEEEeecCCc-ccCCC----hhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHH
Q 042816 73 RQL-GIECAKSNGGFYCWADMSGL-ISSYS----EKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDI 145 (163)
Q Consensus 73 ~~~-g~~~~~~~~g~~~~~~~~~~-~~~~~----~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l 145 (163)
.++ .+.-... -|+++-+++... ..+.+ ......+.+.+++ +||.+.|. .+.+|+... .++++++
T Consensus 363 ~~~~~v~~vrG-~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~-------g~~i~~~Ppl~it~~ei 433 (466)
T PRK07030 363 ADHPHVAEVRQ-TGMILAIEMVQDKASKTPYPWQERRGLKVYQHALE-RGALLRPL-------GSVVYFLPPYVITPEQI 433 (466)
T ss_pred hcCCCEEEeEe-ceeEEEEEeccCccccccCcchhHHHHHHHHHHHH-CCeEEEec-------CCEEEEECCccCCHHHH
Confidence 223 2222333 345555666321 10000 0012467777776 89999762 146888743 3588999
Q ss_pred HHHHHHHHHHHHHh
Q 042816 146 HVVMERIRRISQTC 159 (163)
Q Consensus 146 ~~~~~~l~~~~~~~ 159 (163)
+++++++.++++++
T Consensus 434 d~~~~~l~~al~~~ 447 (466)
T PRK07030 434 DFLAEVASEGIDIA 447 (466)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999876
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.48 Score=37.17 Aligned_cols=66 Identities=11% Similarity=0.010 Sum_probs=41.2
Q ss_pred CCCCc-eeEEEEEecCHHHHHHHHHh--hcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLPG-FRISVIYSYNNSVLAAAKKL--ARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~G-~RiG~~i~~~~~~~~~~~~~--~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
++.+| +|.||++. ++++++.++.. ... ..++++.+..+...|+.- +..+++ ..++...+.+.|+++
T Consensus 213 l~g~gd~~gG~v~~-~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~tl---~~r~~~----~~~na~~~a~~L~~~ 283 (403)
T PRK07503 213 LGGHGDITAGLVVG-GKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTL---ALRMDR----HCASAQAVAEWLARH 283 (403)
T ss_pred ccCCCceeEEEEEc-CHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcchH---HHHHHH----HHHHHHHHHHHHHhC
Confidence 45554 88999998 89998888743 322 346666666555555542 232333 335677777777776
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.35 Score=37.55 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=19.8
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLAR 28 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~ 28 (163)
.+|.+.|+++++++++.+.++..+.
T Consensus 184 ~~g~~gG~v~~~~~~~~~~~~~~~~ 208 (376)
T TIGR02379 184 TSGGEGGALLINDQAFIERAEIIRE 208 (376)
T ss_pred cccCCceEEEECCHHHHHHHHHHHH
Confidence 5678999999966888888876654
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.56 Score=37.66 Aligned_cols=137 Identities=9% Similarity=0.079 Sum_probs=76.1
Q ss_pred eEEEEEecCHHHHHHHHHh---h-----cccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 8 RISVIYSYNNSVLAAAKKL---A-----RFSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~---~-----~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
-+|.+++ ++++.+.+..- . ..++.+++.-.++.+.|+ +... -+...++-+.++ .+.+.++++.
T Consensus 314 Plaav~~-~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l-~~~~~~~g~~l~----~~~~~~~~~~ 387 (472)
T PRK08742 314 PLSAVLA-TQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDV-IARNQPTAARMT----QLAAQIGEHP 387 (472)
T ss_pred Ccceeec-cHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHH----HHHHHHhcCC
Confidence 6888888 88988877531 1 123456666555555443 3222 233333333333 2333344442
Q ss_pred -CccccCCceeEEEeecCCcccCC-C--h--hhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHH
Q 042816 77 -IECAKSNGGFYCWADMSGLISSY-S--E--KGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVM 149 (163)
Q Consensus 77 -~~~~~~~~g~~~~~~~~~~~~~~-~--~--~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~ 149 (163)
+.-.+.. |+++-+++...-... . . .-...+.+.+++ +||.+.+. .+.+||.... ++++++++++
T Consensus 388 ~i~dvRG~-Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~-------g~vi~~~PpL~it~~ei~~~~ 458 (472)
T PRK08742 388 HVADVRQA-GMVVAFELTRGGNKRTPFPPAARVGLHAYRAALA-RGVVLRPL-------GDVLYWMPPYCVDEAQLALLA 458 (472)
T ss_pred CeeeEecc-ceEEEEEeccCccccccCCchhHHHHHHHHHHHH-CCeEEEec-------CCEEEEECCCCCCHHHHHHHH
Confidence 2223333 455555653211000 0 0 012456677776 89999762 1468887754 4889999999
Q ss_pred HHHHHHHHHh
Q 042816 150 ERIRRISQTC 159 (163)
Q Consensus 150 ~~l~~~~~~~ 159 (163)
++|.+++.+.
T Consensus 459 ~~l~~~l~~~ 468 (472)
T PRK08742 459 DTTRHAIDEA 468 (472)
T ss_pred HHHHHHHHHH
Confidence 9999999865
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.064 Score=45.79 Aligned_cols=99 Identities=18% Similarity=0.114 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-------CCccccC---------CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCe
Q 042816 54 ININRERLRRLYVKFVAGLRQL-------GIECAKS---------NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKV 117 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-------g~~~~~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi 117 (163)
+++..++..+..+++.+.|+++ ++.+..+ .++.+.| .+...- ..... ...+..|+..+||
T Consensus 338 ~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsF-nv~~~~--~~~v~-~~~v~~l~~~~gI 413 (805)
T PLN02724 338 ISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTF-NLKRAD--GSWVG-HREVEKLASLSGI 413 (805)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEE-EEEcCC--CCEeC-HHHHHHHHHhcCc
Confidence 4666777777788888888765 2555543 2344332 222110 00012 2334456666899
Q ss_pred EEcCCCCCCCC---------------------------------CCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 118 NVTPGSSCHCI---------------------------------EPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 118 ~v~pg~~f~~~---------------------------------~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
.++.|..+... ..+.+|+|++. .+.++++..++.|.+..
T Consensus 414 ~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 414 QLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred EEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 99998665311 13899999975 37789999999888855
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.1 Score=40.40 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=56.7
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc-------------------cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF-------------------SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLY 65 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~-------------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 65 (163)
+|.+.++++. |+++.+.+...... .+.+...+...+.+.... -+.+++..+.-+++.
T Consensus 185 ~g~gG~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~q---l~~l~~~~~~R~~~~ 260 (375)
T PRK11706 185 AGEGGALLIN-DPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQ---LEAADRINQRRLALW 260 (375)
T ss_pred ccCCeEEEEC-CHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4888888877 88988876655421 123333332222222111 122344444444555
Q ss_pred HHHHHHhhhc---C-Cccc-cCC----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC
Q 042816 66 VKFVAGLRQL---G-IECA-KSN----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP 121 (163)
Q Consensus 66 ~~l~~~l~~~---g-~~~~-~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p 121 (163)
+.+.+.|..+ | +... .+. ...++|+.++... +..++.+.|.+ +||.+.+
T Consensus 261 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~r~~l~~~L~~-~gI~~~~ 318 (375)
T PRK11706 261 QRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDLE------DRSALINFLKE-AGIMAVF 318 (375)
T ss_pred HHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCcC------CHHHHHHHHHH-CCCCccc
Confidence 5666666554 1 3322 122 2334566666422 56788888876 8998764
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.68 Score=36.14 Aligned_cols=67 Identities=9% Similarity=-0.082 Sum_probs=40.0
Q ss_pred CCCC-ceeEEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLP-GFRISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~-G~RiG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
++.+ +.+.||+++.++++.+.+....... ..+++....+...|+.- ....+...++...+.+.|+++
T Consensus 209 l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~tl-------~~R~~~~~~na~~la~~L~~~ 278 (388)
T PRK07811 209 IGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKTL-------AVRMDRHSENAEAVAEFLAGH 278 (388)
T ss_pred ecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 3443 3678999985677777776555432 33444444444445442 233344566788888888877
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.57 Score=37.47 Aligned_cols=137 Identities=9% Similarity=0.047 Sum_probs=74.8
Q ss_pred eeEEEEEecCHHHHHHHHHh----h---c--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 7 FRISVIYSYNNSVLAAAKKL----A---R--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~----~---~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+-+|.+++ .+++.+.+..- . . .++.+++.-.++...|+ +... .++ .+++-+++.+.|++
T Consensus 300 ~Pi~av~~-~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l-~~~-------~~~~g~~l~~~l~~ 370 (460)
T PRK06916 300 LPIAITVT-TDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNL-IEQ-------VARKTEYVATQLED 370 (460)
T ss_pred cccceeee-cHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccH-HHH-------HHHHHHHHHHHHHH
Confidence 46888888 88888877521 1 1 13456666555555543 2221 222 33333333333333
Q ss_pred ---c-CCccccCCceeEEEeecCCcc--cCC---ChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhH
Q 042816 75 ---L-GIECAKSNGGFYCWADMSGLI--SSY---SEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKD 144 (163)
Q Consensus 75 ---~-g~~~~~~~~g~~~~~~~~~~~--~~~---~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~ 144 (163)
+ .+.-....| .++-+++.... +.. ...-...+...+++ +||++.|. .+.+|+..+ .+++++
T Consensus 371 l~~~~~v~~vrG~G-lm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~-------g~~l~~~Ppl~it~~~ 441 (460)
T PRK06916 371 LFALKHVGDIRQLG-LMVGIELVKNKETKEPFEWTERVGVQVCKRSRE-LGMLTRPL-------GNTIVFMPPLASTIDE 441 (460)
T ss_pred hhcCCCeEEeecCC-ceeeEEeecccccccCCCchhhHHHHHHHHHHH-CCeEEEec-------CCEEEEeCCcccCHHH
Confidence 2 122223344 44444553211 000 00012467777776 99999763 146787743 358899
Q ss_pred HHHHHHHHHHHHHHhhh
Q 042816 145 IHVVMERIRRISQTCKS 161 (163)
Q Consensus 145 l~~~~~~l~~~~~~~~~ 161 (163)
++++++++.+++.++..
T Consensus 442 id~~~~~l~~~l~~~~~ 458 (460)
T PRK06916 442 LDEMLRILYKAISDVTE 458 (460)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999999987643
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.27 Score=39.60 Aligned_cols=104 Identities=11% Similarity=0.042 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-CCcccc-CCceeEEEeecCCc-ccCCC-hhhHHHHHHHHHHhcCeEEcCCCCCCCCCC
Q 042816 55 NINRERLRRLYVKFVAGLRQL-GIECAK-SNGGFYCWADMSGL-ISSYS-EKGELELWDKLLNVAKVNVTPGSSCHCIEP 130 (163)
Q Consensus 55 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~~~g~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~ 130 (163)
.+..+..-+..+++.+.+++. ++++.. |+.++.+ ++++.. ..... ..-..++.+.|.++..+.+.+.. +. +.
T Consensus 379 ~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~-Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~-~~--g~ 454 (490)
T PLN02880 379 QSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVC-FRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTV-LS--GK 454 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEE-EEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEE-EC--CE
Confidence 444444446778888888877 777654 4555443 355421 10000 01124566677765677766543 22 36
Q ss_pred ceEEEEEecC--ChhHHHHHHHHHHHHHHHhhhc
Q 042816 131 GWFSFSFTLL--TEKDIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 131 ~~iRi~~~~~--~~~~l~~~~~~l~~~~~~~~~~ 162 (163)
.++|+++... +.++++..++.|.+..+++...
T Consensus 455 ~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~~ 488 (490)
T PLN02880 455 YVLRFAVGAPLTEERHVTAAWKVLQDEASKLLGK 488 (490)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999652 5578999999998888776544
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.93 Score=36.13 Aligned_cols=144 Identities=12% Similarity=0.116 Sum_probs=89.8
Q ss_pred EEEEEecCHHHHHHHHHhhccc-------CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 042816 9 ISVIYSYNNSVLAAAKKLARFS-------SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAK 81 (163)
Q Consensus 9 iG~~i~~~~~~~~~~~~~~~~~-------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 81 (163)
-|++...++++.+.+++....+ ..+.-...+++..|.+.-. +.+.+... .+.++|.+.|.+.|+.+..
T Consensus 260 GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~-~~y~~~r~----~~a~~La~~L~~~Gvpv~~ 334 (450)
T TIGR02618 260 GGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVD-YEYIEHRV----KQVRYLGDKLKAAGVPIVE 334 (450)
T ss_pred ceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhh-HHHHHHHH----HHHHHHHHHHHHCCCcccC
Confidence 4566646899999988875421 1233333344444443211 12222222 2477888999888999988
Q ss_pred CCceeEEEeecCCc---ccCCChhhHHHHHHHHHHhcCeEEcC-CCCC-CCC---------CCceEEEEEec--CChhHH
Q 042816 82 SNGGFYCWADMSGL---ISSYSEKGELELWDKLLNVAKVNVTP-GSSC-HCI---------EPGWFSFSFTL--LTEKDI 145 (163)
Q Consensus 82 ~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~gi~v~p-g~~f-~~~---------~~~~iRi~~~~--~~~~~l 145 (163)
|.+|--++++.... +++..+ ....++..|..+.||.-.- |+.. +.+ .-+.+|+.+.. -+.+.+
T Consensus 335 p~ggh~V~vda~~~lph~~~~~~-p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~ 413 (450)
T TIGR02618 335 PVGGHAVFLDARRFLPHIPQDQF-PAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHM 413 (450)
T ss_pred CCCcceEEEEhHHhCCCCChhhC-hHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHH
Confidence 88888888887654 333333 6788888888888998543 4332 111 02689999864 255778
Q ss_pred HHHHHHHHHHHHH
Q 042816 146 HVVMERIRRISQT 158 (163)
Q Consensus 146 ~~~~~~l~~~~~~ 158 (163)
+...+.+..+.++
T Consensus 414 ~~v~~~~~~~~~~ 426 (450)
T TIGR02618 414 DVVADGIIKLYKH 426 (450)
T ss_pred HHHHHHHHHHHhh
Confidence 8888887776654
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.66 Score=40.61 Aligned_cols=106 Identities=9% Similarity=0.020 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc-CCccccCCceeE--EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC
Q 042816 51 QKFININRERLRRLYVKFVAGLRQL-GIECAKSNGGFY--CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC 127 (163)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~ 127 (163)
.+-+++..+....+.+++.+.|.+. ++.+..|.+.++ +.++++. +.+..-.+..++.+.|++ +||...- ..|.
T Consensus 801 ~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~-l~~~~g~~~~di~krL~d-~Gihapt-~~~p- 876 (993)
T PLN02414 801 SEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRP-FKNTAGIEPEDVAKRLMD-YGFHAPT-MSWP- 876 (993)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccc-cccccCCCHHHHHHHHHH-cCcEEee-eccc-
Confidence 3456777888888999999999875 566655554321 2344442 111101256889999985 9998654 3353
Q ss_pred CCCceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 128 IEPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 128 ~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
.++.+||+... .+.++++.+++.|..+..+...
T Consensus 877 -v~~~lmiepTE~~skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 877 -VPGTLMIEPTESESKAELDRFCDALISIREEIAD 910 (993)
T ss_pred -cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 37899999864 3778999999999888777653
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.49 Score=37.94 Aligned_cols=61 Identities=18% Similarity=0.137 Sum_probs=43.7
Q ss_pred CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 83 NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
.-|+++-++++.. .....+.+.+++ +||.+.+. +.+.+||.... ++++++++++++|.+++
T Consensus 403 G~Glm~gie~~~~------~~~~~i~~~~~~-~Gvl~~~~------g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 403 GRGTFIAWDTPDE------AKRDKLLKKARN-NGVNIGGC------GVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred CeEEEEEEecCCH------HHHHHHHHHHHH-CCcEEecC------CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 3466666677531 135678888876 89999763 24789998764 58899999999998753
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=1 Score=35.96 Aligned_cols=144 Identities=11% Similarity=0.102 Sum_probs=93.0
Q ss_pred EEEEEecCHHHHHHHHHhhcc----c---CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 042816 9 ISVIYSYNNSVLAAAKKLARF----S---SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAK 81 (163)
Q Consensus 9 iG~~i~~~~~~~~~~~~~~~~----~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 81 (163)
-|++++.++++.+.++..... . +.+.--..+++..|.+... .++++.... +.++|.+.|.+.|+.+..
T Consensus 267 GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~-~~y~~~ri~----~~~~l~~~L~~~Gvpv~~ 341 (460)
T PRK13237 267 GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQ-YEYIEHRVG----QVRYLGEKLLAAGVPIVE 341 (460)
T ss_pred ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhch-HHHHHHHHH----HHHHHHHHHHHCCCceec
Confidence 488888889999999887442 1 2333233444444443211 233333333 568899999999999999
Q ss_pred CCceeEEEeecCCc---ccCCChhhHHHHHHHHHHhcCeEEcC-CCCC-CCC---------CCceEEEEEec--CChhHH
Q 042816 82 SNGGFYCWADMSGL---ISSYSEKGELELWDKLLNVAKVNVTP-GSSC-HCI---------EPGWFSFSFTL--LTEKDI 145 (163)
Q Consensus 82 ~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~gi~v~p-g~~f-~~~---------~~~~iRi~~~~--~~~~~l 145 (163)
|.||--++++.... +++..+ ....++..|..+.||.-.- |+.. +.+ .-+-+|+.+.. -+.+.+
T Consensus 342 p~ggH~v~vda~~~lph~~~~~~-p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~ 420 (460)
T PRK13237 342 PVGGHAVFLDARRFLPHLPQDQF-PAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHM 420 (460)
T ss_pred CCCceEEEEEhHHhCCCCCcccC-hHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHH
Confidence 99998888886553 333333 6788888888888998542 3321 110 02689999864 255778
Q ss_pred HHHHHHHHHHHHH
Q 042816 146 HVVMERIRRISQT 158 (163)
Q Consensus 146 ~~~~~~l~~~~~~ 158 (163)
+...+.+..+.++
T Consensus 421 ~~v~~~~~~~~~~ 433 (460)
T PRK13237 421 DVVADSVIKLYKH 433 (460)
T ss_pred HHHHHHHHHHHHh
Confidence 8788877776654
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.96 Score=39.33 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-CCccccCCceeE--EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQL-GIECAKSNGGFY--CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEP 130 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~ 130 (163)
+.+..+.-..+.+++.+.|.+. ++.+.++++-++ +.+++...-...+ .+..++.+.|++ +||...- ..|. .+
T Consensus 773 Lk~aa~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEfii~~~~l~~~~g-~~~~dvakRL~d-~Gihapt-~~fP--v~ 847 (954)
T PRK12566 773 LADASEVAILSANYLANQLGGAFPVLYRGRNERVAHECILDLRPLKAQTG-ISEEDVAKRLMD-YGFHAPT-MSFP--VP 847 (954)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEEEEEccccccccC-CCHHHHHHHHHH-CCcEEeE-Eeec--cC
Confidence 6666666677889999999775 555543333211 2234332100011 266889999985 8998544 3443 27
Q ss_pred ceEEEEEec-CChhHHHHHHHHHHHHHHHhh
Q 042816 131 GWFSFSFTL-LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 131 ~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+.+||+... .+.++++..++.|..+.++..
T Consensus 848 ~~LmIepTE~eskeEIDrf~eAL~~I~~e~~ 878 (954)
T PRK12566 848 GTLMVEPTESESKAELDRFVEAMLSIRAEIG 878 (954)
T ss_pred CEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 899999864 377889999999888877654
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.2 Score=34.62 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=76.7
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC-ccc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI-ECA 80 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~-~~~ 80 (163)
.+++.|++++.++++.+.+...... ...+++....+..-++.- ....+.-.++...+.+.|+++ .+ ++.
T Consensus 198 ~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl-------~~R~e~~~~na~~la~~L~~~~~v~~v~ 270 (378)
T TIGR01329 198 SDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTL-------AIRIEKQQENARAIAMFLSTHPRVKKVR 270 (378)
T ss_pred ccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCH-------HHHHHHHHHHHHHHHHHHHhCCCccEEE
Confidence 4588999988566676777766553 234444444334444432 333334445566666666655 22 111
Q ss_pred c----------------CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-----------------
Q 042816 81 K----------------SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC----------------- 127 (163)
Q Consensus 81 ~----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~----------------- 127 (163)
. ...|-.+.+++.. . ....+|++.| +..++.+.-|.....
T Consensus 271 ~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~-~-----~~~~~~~~~L-~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~ 343 (378)
T TIGR01329 271 YAGLPSHPGFHLHFSQAKGAGSVLSFETGS-V-----ALSKRLVEAT-KLFSITVSFGSVNSLISMPCFMSHASIPAEVR 343 (378)
T ss_pred CCCCCCCccHHHHHHhCCCcceEEEEEECC-H-----HHHHHHHHhC-cCcccccCCCCCCceeeCCCccccccCCHHHH
Confidence 0 1122234445532 1 2367888877 446777665543220
Q ss_pred ----CCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 128 ----IEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 128 ----~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
..++.+|+|++. |+.+..++-|.+++++
T Consensus 344 ~~~gi~~~liR~svGl---E~~~dl~~dl~~al~~ 375 (378)
T TIGR01329 344 EERGLPEDLVRLSVGI---EDVDDLISDLDIAFVT 375 (378)
T ss_pred HhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHh
Confidence 125799999997 5667777777777664
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.3 Score=34.65 Aligned_cols=140 Identities=14% Similarity=0.095 Sum_probs=74.6
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc-c
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE-C 79 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~ 79 (163)
-.+.+.|++++.++++.+.++..... .+.+++....+...+++- . ...+...++...+.+.|+++ ++. +
T Consensus 216 ~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~tl---~----~Rl~~~~~~a~~la~~L~~~p~v~~v 288 (394)
T PRK07050 216 GSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSL---Q----VRLAAHDRSALEVAEWLKARPEIATV 288 (394)
T ss_pred CCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCcH---H----HHHHHHHHHHHHHHHHHHhCCCccEE
Confidence 35678999888678888888777664 345666555555555542 2 22333344455677777766 322 2
Q ss_pred cc-----------------CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-----------C----
Q 042816 80 AK-----------------SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH-----------C---- 127 (163)
Q Consensus 80 ~~-----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~-----------~---- 127 (163)
.. ..|+++ -+.+.... +..+..+|.+.|.. .++.+.=|.... .
T Consensus 289 ~~p~l~~~p~~~~~~~~~~~~g~~~-s~~l~~~~---~~~~~~~~~~~l~~-~~~~~s~G~~~sl~~~~~~~~~~~~~~~ 363 (394)
T PRK07050 289 LHPALPDCPGHAFWMRDFTGAGGLF-SVVFDERY---SPAQVDAFVEALEL-FAIGWSWGGACSLAMPYDVASMRTAKWP 363 (394)
T ss_pred ECCCCCCCccHHHHHHhCCCCceEE-EEEECCCC---CHHHHHHHHHcCCC-CeeccccCCccceEeeCcccccchhhcC
Confidence 11 123333 23443210 11245666665533 444322121111 0
Q ss_pred CCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 128 IEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 128 ~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
...+-+|+|++- |+.+..++-|.+++.+
T Consensus 364 ~~~~~iR~svGl---E~~~dl~~dl~~al~~ 391 (394)
T PRK07050 364 HRGTLVRLYIGL---EDEADLIADLEQALEA 391 (394)
T ss_pred CCCCEEEEEeCc---CCHHHHHHHHHHHHHH
Confidence 113689999997 5566666666666654
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.4 Score=34.53 Aligned_cols=64 Identities=5% Similarity=-0.074 Sum_probs=41.7
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
.+++.|++++.++++.+.+...... ..++++....+..-|+.- .-..+...++...+.+.|+++
T Consensus 205 ~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~Tl-------~lR~~~~~~~a~~~a~~L~~~ 270 (388)
T PRK08861 205 SDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTL-------GARMRVHEESAQQILAYLQTQ 270 (388)
T ss_pred CcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCCH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 4578999988556777777766654 345666666666666653 222333455677788888877
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.29 Score=37.64 Aligned_cols=124 Identities=18% Similarity=0.211 Sum_probs=71.5
Q ss_pred eeEEEEEecCHHHHHHHHHhh---------cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh-c-
Q 042816 7 FRISVIYSYNNSVLAAAKKLA---------RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ-L- 75 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~---------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~- 75 (163)
..+|++++ +++..+.+.... ...+++.....++...++-- .+..+..+++.++..+++.+.|++ .
T Consensus 205 ~G~g~l~v-~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~---~~~~~~i~~~~~~l~~~l~~~l~~~~~ 280 (364)
T PLN02651 205 KGVGALYV-RRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELA---MKEMDYDEKHMKALRERLLNGLRAKLG 280 (364)
T ss_pred CceEEEEE-cCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 45788888 554333221111 12245555555555555432 233467778888888888888875 4
Q ss_pred CCccccCCc-----eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-----------------CCceE
Q 042816 76 GIECAKSNG-----GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-----------------EPGWF 133 (163)
Q Consensus 76 g~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-----------------~~~~i 133 (163)
|+++..|.. .-.+-+.++. .+..++...| + . |.+..|+.+... ..+.+
T Consensus 281 ~~~i~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~L-~-~-i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~v 350 (364)
T PLN02651 281 GVRVNGPRDPEKRYPGTLNLSFAY-------VEGESLLMGL-K-E-VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSL 350 (364)
T ss_pred CEEEECCCCcccCcCCEEEEEeCC-------CCHHHHHHHh-C-C-EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceE
Confidence 676665411 1123334443 2667888877 3 3 999888755322 14799
Q ss_pred EEEEecC-ChhH
Q 042816 134 SFSFTLL-TEKD 144 (163)
Q Consensus 134 Ri~~~~~-~~~~ 144 (163)
|+|++.- ++++
T Consensus 351 R~S~~~~~t~~d 362 (364)
T PLN02651 351 RLGVGRFTTEEE 362 (364)
T ss_pred EEEcCCCCCHHH
Confidence 9999853 4344
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=94.25 E-value=1.2 Score=36.49 Aligned_cols=107 Identities=11% Similarity=0.026 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc-CCcccc-CCceeEEEeecCCcccCC-ChhhHHHHHHHHHHhcCeEEcCCCCCCCCC
Q 042816 53 FININRERLRRLYVKFVAGLRQL-GIECAK-SNGGFYCWADMSGLISSY-SEKGELELWDKLLNVAKVNVTPGSSCHCIE 129 (163)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~ 129 (163)
-+++..+..-+..+++.+.+++. ++++.. |.-+..+|--.|+..... ...-...+.+.+.++..+.+.+... . +
T Consensus 425 G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~-~--g 501 (539)
T PLN02590 425 NLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTAL-S--G 501 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEE-C--C
Confidence 34666666677788899999887 777654 455444432223211000 0012356677776645555555432 2 3
Q ss_pred CceEEEEEec--CChhHHHHHHHHHHHHHHHhhhc
Q 042816 130 PGWFSFSFTL--LTEKDIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 130 ~~~iRi~~~~--~~~~~l~~~~~~l~~~~~~~~~~ 162 (163)
.-++|+++.. .++++++.+++.|.+...++.++
T Consensus 502 ~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~~~ 536 (539)
T PLN02590 502 KFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFTRN 536 (539)
T ss_pred EEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 5799999975 26788999999999888777654
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.025 Score=44.48 Aligned_cols=107 Identities=21% Similarity=0.156 Sum_probs=61.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAK 81 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 81 (163)
+|.+|+|+||++++++.+...... ....+++.+.|.++...+..+. +.++ ++.+ .+.++..|... .
T Consensus 205 l~g~G~~lGg~v~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~~~~~~--~~~~------~~~~----~~~~~~~G~~~-~ 270 (418)
T TIGR01326 205 IGGHGTAIGGVIVDGGKFDWANGR-FPLFTTPDPSYHGLVFTETFGN--PAFI------VKAR----VQLLRDLGAAL-S 270 (418)
T ss_pred ccCCccceEEEEEecccccccccc-cccccCCCCccccchhhhhhch--hhHH------HHHH----HHHHHhcCCCC-C
Confidence 688999999999933344332211 2235677888887665543221 1222 1111 34445557777 4
Q ss_pred CCceeEEEeecCCcc---cCCChhhHHHHHHHHHHhcCeE--EcCCC
Q 042816 82 SNGGFYCWADMSGLI---SSYSEKGELELWDKLLNVAKVN--VTPGS 123 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~gi~--v~pg~ 123 (163)
|.++++++..+.... ...+ .++..++++|.++.+|. ..||.
T Consensus 271 p~~a~~~~~~l~tl~~R~~~~~-~~a~~la~~L~~~~~V~~V~yP~l 316 (418)
T TIGR01326 271 PFNAFLLLQGLETLSLRMERHV-ENALKVAEFLEAHPKVAWVNYPGL 316 (418)
T ss_pred HHHHHHHHCCcccHHHHHHHHH-HHHHHHHHHHHhCCCccEEECCCC
Confidence 788888877765321 0111 26788999998866764 34553
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=2.4 Score=33.00 Aligned_cols=140 Identities=11% Similarity=0.064 Sum_probs=82.0
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--------------ccCCChHHHHHHHHhcCChHHHHH--HHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--------------FSSVSAPSQNLLVSMLSDTKFVQK--FININRERLRRLY 65 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--------------~~~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~~~~ 65 (163)
+|-||+ +.++. ++++++....... +.+++.+.-.++...|+.-. ++ =++.+.+..+++.
T Consensus 200 lgP~Gl--tvviv-s~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~--~e~GGl~~~~~r~~~ka 274 (364)
T PRK12462 200 LGPAGV--TVAII-RRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIR--DEIGGVHAMRDINARKA 274 (364)
T ss_pred CCCCce--EEEEE-CHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHH--HhccCHHHHHHHHHHHH
Confidence 565554 67777 7776655432111 12344444455555543210 11 2567778888899
Q ss_pred HHHHHHhhhc-CCccc----cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-
Q 042816 66 VKFVAGLRQL-GIECA----KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL- 139 (163)
Q Consensus 66 ~~l~~~l~~~-g~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~- 139 (163)
+.+++.+++. |+... ...+-+.+.++++.. ..+.+|.+.+.+ +|+....|..- -+.+|+|+=.
T Consensus 275 ~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~------~l~~~f~~~a~~-~gl~~lkGhr~----vgg~Ras~yna 343 (364)
T PRK12462 275 AMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQP------RLDTLFKEQSTE-AGFCGLSGHRS----IGGIRASLYNA 343 (364)
T ss_pred HHHHHHHHhCCCcccCCCChhhcCcceEEEEcCCH------HHHHHHHHHHHH-CCCccccCCcc----cCceEEEcCCC
Confidence 9999999887 43322 123444555565542 256778877654 89998776543 3459999843
Q ss_pred CChhHHHHHHHHHHHHHH
Q 042816 140 LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 140 ~~~~~l~~~~~~l~~~~~ 157 (163)
.+.|.++..++-++++-+
T Consensus 344 ~~~e~v~~L~~fm~~f~~ 361 (364)
T PRK12462 344 VSEQAVSRLCAFLKDFAI 361 (364)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 476666666555555443
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.82 Score=39.77 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCccccCCceeE--EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCC
Q 042816 52 KFININRERLRRLYVKFVAGLRQLGIECAKSNGGFY--CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE 129 (163)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~ 129 (163)
+=+++.-+....+..++.+.|.+.|+++..+ .|| +.++++. .+..++.+.+++ +||.+... .
T Consensus 338 ~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~--~fF~~~~v~~~~-------~~~~~i~~~~~~-~gi~l~~~------~ 401 (939)
T TIGR00461 338 KGLKNIARRIHSLTSILANGLENDPHELINK--TWFDTLTVKVGN-------GISSELLKAAEE-FNINLRAV------D 401 (939)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--CccceEEEEeCC-------CCHHHHHHHHHH-CCCeeeec------C
Confidence 4467777778888889999999989887755 444 3344532 156888888877 89997651 2
Q ss_pred CceEEEEEec-CChhHHHHHHHHHH
Q 042816 130 PGWFSFSFTL-LTEKDIHVVMERIR 153 (163)
Q Consensus 130 ~~~iRi~~~~-~~~~~l~~~~~~l~ 153 (163)
++.+++|+.. .+.++++..++.+.
T Consensus 402 ~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 402 TTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred CCEEEEEeecCCCHHHHHHHHHHhc
Confidence 4689999864 37778888888774
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.93 Score=35.14 Aligned_cols=126 Identities=11% Similarity=0.105 Sum_probs=70.4
Q ss_pred ceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCce
Q 042816 6 GFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGG 85 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g 85 (163)
|+-+|.++. ++++... .....++.++++-.++.+.|+--+. +...++.++. +. .+..-.+.-.+.. |
T Consensus 235 G~P~~a~~~-~~~~~~~--~~~~T~~gnp~~~aaa~a~l~~i~~-~~l~~~~~~~-------l~-~l~~~~v~~vRG~-G 301 (364)
T PRK04013 235 GVPVSLTLT-NFDVERG--KHGSTFGGNPLACKAVAVTLRILRR-ERLVEKAGEK-------FI-EIKGERVVTTRGR-G 301 (364)
T ss_pred CceeEEEEe-cccccCC--CcCCCCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHH-------HH-HhccCcceeeeeC-c
Confidence 677888888 5554110 0111235666666555555432110 1222333322 11 1211111222223 5
Q ss_pred eEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 86 FYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
+++-+++.. ....+.+.+++ +|+.+.+. +.+.+|+.... ++++++++++++|.+++.+.
T Consensus 302 l~~gve~~~--------~~~~i~~~~~~-~Gll~~~~------g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~ 361 (364)
T PRK04013 302 LMIGIVLKK--------PVGKYVEELQN-RGYLVHTA------GQRVIRLLPPLIISKDTMEEAKSAIEGVINDI 361 (364)
T ss_pred EEEEEEeCC--------cHHHHHHHHHh-CCcEEeeC------CCCEEEEeCCcccCHHHHHHHHHHHHHHHHHH
Confidence 666667753 34567777776 89998753 14678998753 48899999999999988753
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=2.6 Score=32.90 Aligned_cols=66 Identities=14% Similarity=-0.018 Sum_probs=37.5
Q ss_pred CCCcee-EEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 3 SLPGFR-ISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 3 ~~~G~R-iG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
+.+|-. .|++++.++++.+.+....... .++++....+..-++.- +. ..+...++...+.+.|+++
T Consensus 201 ~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~tL---~~----R~~~~~~na~~la~~L~~~ 269 (385)
T PRK08574 201 AGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKTL---EV----RFERQCRNAMAIAEFLSEH 269 (385)
T ss_pred cCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcH---HH----HHHHHHHHHHHHHHHHHcC
Confidence 445544 4766665788888887666533 34444444444444432 33 3333344667777788776
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=93.67 E-value=2.4 Score=33.73 Aligned_cols=102 Identities=7% Similarity=-0.053 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-CCccccC--CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCC-CCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQL-GIECAKS--NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSC-HCIE 129 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f-~~~~ 129 (163)
+++..+...+..+++.+.|++. ++++..| ..+...| .++..- ..+ .+..++.+.|.+ .|+.+.....- ...+
T Consensus 324 ~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~F-r~~~~~-~~~-~~~~~l~~~L~~-~G~~~~~~~~p~~~~~ 399 (431)
T TIGR01788 324 YRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAF-KLKDDA-DPG-YTLYDLSHRLRE-RGWIVPAYTLPKNAED 399 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEE-EeCCCC-CCC-cCHHHHHHHHHH-CCCcccCCCCCCccCC
Confidence 3566677777888899999888 6777654 5555443 433210 001 256788887765 89875332111 1123
Q ss_pred CceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 130 PGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 130 ~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
..++|+++.. ..++.++..++-|.+++..+
T Consensus 400 ~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 400 IVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 4689999963 47788999999999888765
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.33 E-value=3.1 Score=32.66 Aligned_cols=140 Identities=11% Similarity=0.085 Sum_probs=73.8
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc-----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CC
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF-----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL--GI 77 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~-----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~ 77 (163)
.|+-+|..++ ++++.+.+.--..+ ++-++++-.++...|+.-.. .++.++..+.-+.-++.+.+.+.+. .+
T Consensus 279 gGlPigA~~v-~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~-~e~~k~vs~~~k~L~~~l~e~~~~~~~~i 356 (433)
T KOG1401|consen 279 GGLPIGATGV-RDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKD-PETLKNVSKIGKELRKLLDEYLKKTPNSI 356 (433)
T ss_pred CCceeEEEee-hHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhccCCCce
Confidence 4788999999 88998888655441 45677776666655542111 2445556666566666666766654 22
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHh-------cCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNV-------AKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
... -..|+++-+.+.....+. .|.......|... .|+.+.|- --+++.. .+|.++..++
T Consensus 357 ~g~-~grgl~ig~~~~~p~~~~--~d~~~~~~ll~~~~~~~~~~~gv~i~P~----------~~l~~~~-~~E~i~~~l~ 422 (433)
T KOG1401|consen 357 CGG-VGRGLVIGFEFEGPVYKF--ADAAREQGLLILTLGKGLLEEGVRIAPI----------YLLTVEH-TPEVIQRLLT 422 (433)
T ss_pred eee-eeeEEEEEEEEeechhhh--hhhhhhhhHHHHHHhcccccceEEEecc----------ccccccC-cHHHHHHHHH
Confidence 222 223444433332211010 1222222222221 23333330 0112222 4788899999
Q ss_pred HHHHHHHHhh
Q 042816 151 RIRRISQTCK 160 (163)
Q Consensus 151 ~l~~~~~~~~ 160 (163)
++.+++.++.
T Consensus 423 i~~~~l~~~~ 432 (433)
T KOG1401|consen 423 ILEKVLSALN 432 (433)
T ss_pred HHHHHHHHhc
Confidence 9988887654
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.67 E-value=4.2 Score=32.49 Aligned_cols=135 Identities=12% Similarity=0.124 Sum_probs=69.8
Q ss_pred EEEEEecCHHHHHHHHHh--hcc-----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh----c-C
Q 042816 9 ISVIYSYNNSVLAAAKKL--ARF-----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ----L-G 76 (163)
Q Consensus 9 iG~~i~~~~~~~~~~~~~--~~~-----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~-g 76 (163)
+|-+++ .+++.+.+..- ..+ ++.++++-+++.+-|+ .+++ +.+.+..++.-.++.+.|++ + .
T Consensus 293 l~a~l~-~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~---i~e~--e~l~~~~~~~~~~l~~~L~~~l~~~p~ 366 (449)
T COG0161 293 LSAVLT-SDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLD---ILEE--EDLLERVAEIGAYLQAGLQAALADHPL 366 (449)
T ss_pred hHhHhh-hHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHH---HHHh--cCHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 344555 67788888764 222 2445555443333332 1110 22233333344444444444 2 1
Q ss_pred CccccCCceeEEEeecCCcccCCC---hhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec---CChhHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYS---EKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL---LTEKDIHVVME 150 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~---~~~~~l~~~~~ 150 (163)
+.-.+ .-|+..-+++........ ..-...+.+.+.+ +|+.++|. + + .+-+++ ++++++++.++
T Consensus 367 VgdVR-~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e-~Gl~iRp~---g---~---~i~~~PPliit~~eid~l~~ 435 (449)
T COG0161 367 VGDVR-GLGLIGAIELVADKATKTPFEARVGARVRAAALE-RGLLIRPL---G---D---VIYLMPPLIITREEIDELVD 435 (449)
T ss_pred EEEee-ccceEEEEEEecccccccchhhhHHHHHHHHHHH-CCeEEeec---C---C---EEEEcCCccCCHHHHHHHHH
Confidence 21122 335555556544221110 1124566666666 99999995 2 1 333333 48899999999
Q ss_pred HHHHHHHHhh
Q 042816 151 RIRRISQTCK 160 (163)
Q Consensus 151 ~l~~~~~~~~ 160 (163)
++.+.+++..
T Consensus 436 ~l~~al~~~~ 445 (449)
T COG0161 436 ALREALDETL 445 (449)
T ss_pred HHHHHHHHHH
Confidence 9999988654
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.44 E-value=1 Score=35.12 Aligned_cols=103 Identities=20% Similarity=0.176 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-CCccccCCceeEEEeecCCcccCCC--hhhHHHHHHHHHHhcCeEEcCCCCCC----C
Q 042816 55 NINRERLRRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYS--EKGELELWDKLLNVAKVNVTPGSSCH----C 127 (163)
Q Consensus 55 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~gi~v~pg~~f~----~ 127 (163)
..+.+.++.....+.+.|+.. ++.+....-+..+.+.+....+... ..--+++++..+.+ ++.++....-. .
T Consensus 355 p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~ 433 (467)
T KOG1358|consen 355 PEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERC 433 (467)
T ss_pred cchhhhhhccccccchhhhcCCceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhh-cceehhhhhhhhcccC
Confidence 445666677777888888887 6777765555556666654332211 11234666666664 88877543221 1
Q ss_pred CCCceEEEEEec-CChhHHHHHHHHHHHHHHH
Q 042816 128 IEPGWFSFSFTL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 128 ~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
+-+..+||++.. +++|+++++.+.|+++...
T Consensus 434 ~~~pSiri~~~a~~seeel~ra~~~ik~~~~~ 465 (467)
T KOG1358|consen 434 PIPPSIRICVSAGMSEEELERAAELIKEVASA 465 (467)
T ss_pred CCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 226799999975 5889999999999887654
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.12 E-value=4.8 Score=31.58 Aligned_cols=138 Identities=13% Similarity=0.097 Sum_probs=76.6
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc-c--cCCChHHHHHHHHhcCChHH--HHHHHHHHHHHHHHHHHHHHHHhhhc-CCc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR-F--SSVSAPSQNLLVSMLSDTKF--VQKFININRERLRRLYVKFVAGLRQL-GIE 78 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~-~--~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 78 (163)
.|+-+|.++. .+++.+-+.+... + ++.++++-.+..++|+--+. +.+.-...-+++.++...+.+ ++ -+-
T Consensus 285 nG~Pl~AVvt-t~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d---~h~iIG 360 (442)
T KOG1404|consen 285 NGFPLGAVVT-TPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAALKD---KHPIIG 360 (442)
T ss_pred CCCcceeeec-CHHHHHHHHhccccccccCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh---cCCcee
Confidence 3688999999 9999999998885 2 45677776666666653210 123333333333333332222 22 111
Q ss_pred cccCCceeEEEeecCCcc-c--CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLI-S--SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERI 152 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l 152 (163)
-.+ --|+++=+++-..- . .+.......+.+.+.+ +|+.|--|..++ +.+||+-.- ++.++++-+++..
T Consensus 361 dVR-G~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke-~Gvlvg~g~i~G----~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 361 DVR-GRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKE-LGVLVGKGGIHG----NVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred ecc-cceeEEEEEEecccCCCCCcchHHHHHHHHHHHH-hCeeeecccccc----eEEEecCCeeccHHHHHHHHHHH
Confidence 122 22444444442211 0 1111234566666765 999996666555 388998743 4788887666655
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=4.7 Score=31.33 Aligned_cols=25 Identities=4% Similarity=0.106 Sum_probs=18.9
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhh
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLA 27 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~ 27 (163)
.+++.+.|+++..++++.+.++...
T Consensus 183 ~l~~g~GG~v~~~~~~~~~~~~~~~ 207 (379)
T PRK11658 183 NITCAEGGLVVTDDDELADRLRSLK 207 (379)
T ss_pred cCcccCceEEEECCHHHHHHHHHHH
Confidence 4677789999986688888776644
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.75 E-value=3.1 Score=36.54 Aligned_cols=83 Identities=22% Similarity=0.387 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccccCCceeE--EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCc
Q 042816 54 ININRERLRRLYVKFVAGLRQLGIECAKSNGGFY--CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPG 131 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~ 131 (163)
+++..++...+..++.+.|+..|+++..+ .+| +.++++. +..++.+.|++ +||.+.. .. ++
T Consensus 352 l~~Ia~~~~~la~~l~~~L~~~G~~~~~~--~~f~~~~~~~~~--------~~~~i~~~l~~-~gi~~~~---~~---~~ 414 (954)
T PRK05367 352 LKAIARRVHRLAAILAAGLRALGLEVVHD--SFFDTLTVEVGG--------DAAAVLARALA-AGINLRR---VD---DD 414 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCC--CCCCeEEEeCCC--------CHHHHHHHHHH-CCceecc---cc---CC
Confidence 56777888888888999997778776533 222 2233332 57889999987 8999832 11 46
Q ss_pred eEEEEEec-CChhHHHHHHHHHH
Q 042816 132 WFSFSFTL-LTEKDIHVVMERIR 153 (163)
Q Consensus 132 ~iRi~~~~-~~~~~l~~~~~~l~ 153 (163)
.+|+|+.. .++++++..++.|.
T Consensus 415 ~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 415 HVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred EEEEEecccCCHHHHHHHHHHHc
Confidence 79999964 37788888888886
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=91.40 E-value=8.2 Score=33.90 Aligned_cols=103 Identities=7% Similarity=-0.031 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccccC-CceeE---EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQLGIECAKS-NGGFY---CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE 129 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~ 129 (163)
+++.-+.--.+.+++.+.|++ ++++.-+ ..+.+ +.++++..-...+ .+..++.+.|++ +|+.-.. ..|...+
T Consensus 764 L~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~~~~~~g-~~~~dIakrL~d-~G~hapt-~~~pv~g 839 (939)
T TIGR00461 764 LPKASVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRPLKAKTG-IEAIDVAKRLQD-YGFHAPT-LSFPVPG 839 (939)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccchhhhcC-CCHHHHHHHHHh-CCeeccc-cCCccCC
Confidence 566667777788999999987 4444433 12221 3346653110111 267999999997 8998443 3354433
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHHhhh
Q 042816 130 PGWFSFSFTLLTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 130 ~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
.=.++.+-+. +.++++..++.+.++-++...
T Consensus 840 ~lmiepTE~e-skeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 840 TLMVEPTESE-SLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred eEEEEeeccC-CHHHHHHHHHHHHHHHHHHHH
Confidence 2355566665 888999999988877766554
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.40 E-value=6.1 Score=34.83 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-CCccccCCceeE--EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQL-GIECAKSNGGFY--CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEP 130 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~ 130 (163)
+++..+.--.+.+++.+.|++. .+.+..|.+..+ +.++++..-...+ .+..++.+.|.+ +|+.... ..|.. +
T Consensus 772 lr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g-~~~~di~krL~d-~G~~~~t-~~~pv--~ 846 (954)
T PRK05367 772 LRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKESTG-ITVDDIAKRLID-YGFHAPT-MSFPV--A 846 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccccCC-CCHHHHHHHHHH-CCCeEee-cCCcc--C
Confidence 4555555557888888888775 444433322110 2233321100001 156889999976 8998654 23443 6
Q ss_pred ceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 131 GWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 131 ~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
+.+||+... .+.++++..++.+..+..+..+
T Consensus 847 ~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 847 GTLMVEPTESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred CEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 778888753 3778899999988887776654
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=91.29 E-value=3.4 Score=36.43 Aligned_cols=83 Identities=18% Similarity=0.174 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccccC-CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCce
Q 042816 54 ININRERLRRLYVKFVAGLRQLGIECAKS-NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGW 132 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~ 132 (163)
+++..++..++..++.+.|.+.|+++..+ ..+. +.++++ +..++.+.|++ +||.+... + .+.
T Consensus 380 l~~Ia~ri~~la~~l~~~L~~~G~~~~~~~~f~~-vt~~~~---------~~~~v~~~L~~-~gI~l~~~---~---~~~ 442 (993)
T PLN02414 380 LKTIAQRVHGLAGVFAAGLKKLGFQVQSLPFFDT-VKVKCS---------DADAIADAAAK-VGINLRVV---D---ANT 442 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccCCCCCcCe-EEEecC---------CHHHHHHHHHH-CCCeeEEe---c---CCe
Confidence 46667778888888899898778776543 1121 223443 34788888876 89977532 1 357
Q ss_pred EEEEEec-CChhHHHHHHHHHH
Q 042816 133 FSFSFTL-LTEKDIHVVMERIR 153 (163)
Q Consensus 133 iRi~~~~-~~~~~l~~~~~~l~ 153 (163)
+|+|+.. .++++++..++.|.
T Consensus 443 lrvs~~e~~T~edId~L~~~l~ 464 (993)
T PLN02414 443 VTVSFDETTTLEDVDKLFKVFA 464 (993)
T ss_pred EEEEeeccCCHHHHHHHHHHHc
Confidence 9999965 37788888888875
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=90.51 E-value=11 Score=32.72 Aligned_cols=139 Identities=13% Similarity=0.046 Sum_probs=74.4
Q ss_pred Cc-eeEEEEEecCHHHHHHHHHh---h---c--ccCCChHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHH----HH
Q 042816 5 PG-FRISVIYSYNNSVLAAAKKL---A---R--FSSVSAPSQNLLVSML---SDTKFVQKFININRERLRRLYV----KF 68 (163)
Q Consensus 5 ~G-~RiG~~i~~~~~~~~~~~~~---~---~--~~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~----~l 68 (163)
.| +-+|.+++ ++++.+.+..- . . .++.++++-+++.+.| ++.+. .+...+.-.+..+ .+
T Consensus 658 gG~~Plaa~l~-~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~----~~~l~~~~~~l~~~l~~~l 732 (817)
T PLN02974 658 GGLVPLAATLA-TEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPST----NPNLIPPGSRLRELWDEEL 732 (817)
T ss_pred CCCCccEEEEE-cHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccH----HHHHHHHHHHHHHHHHHHH
Confidence 35 47889999 89999988521 1 1 2456666665554444 44322 1222222222222 23
Q ss_pred HHHhhhc-CCccccCCceeEEEeecCCcccC--CChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhH
Q 042816 69 VAGLRQL-GIECAKSNGGFYCWADMSGLISS--YSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKD 144 (163)
Q Consensus 69 ~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~ 144 (163)
.+.+.++ .+.-.... |+++-+++...-.. ....-...+.+.++.++||.++|. .+.+++.... .++++
T Consensus 733 ~~~l~~~p~V~~VRg~-Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~-------Gnvi~l~pP~~i~~e~ 804 (817)
T PLN02974 733 VRAISSLPNVERVVSL-GTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL-------GNVVYLMCGPTTSPET 804 (817)
T ss_pred HHHHhhCCCeeEEEee-eeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec-------CCEEEEeCCCCCCHHH
Confidence 2334444 23333333 45555666431100 011124567777772489999873 1467765433 48889
Q ss_pred HHHHHHHHHHHH
Q 042816 145 IHVVMERIRRIS 156 (163)
Q Consensus 145 l~~~~~~l~~~~ 156 (163)
+++.++.+.+.+
T Consensus 805 l~~~~~~l~~~~ 816 (817)
T PLN02974 805 CTRLLRKVYRRL 816 (817)
T ss_pred HHHHHHHHHHHh
Confidence 999999887754
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.07 E-value=7.9 Score=30.44 Aligned_cols=65 Identities=9% Similarity=0.058 Sum_probs=43.2
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
|-.++..|+++. ++++.+.+...... .+++++....+..-|+. +....+...++...+.+.|+++
T Consensus 211 Gh~d~~~G~~~~-~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T-------L~lR~~~~~~na~~la~~L~~~ 277 (394)
T PRK09028 211 GHSDVMLGTATA-NEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRT-------LGVRLAQHEKNALKVANWLATR 277 (394)
T ss_pred CCCCEEEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-------HHHHHHHHHHHHHHHHHHHhcC
Confidence 445678898877 88887777655443 34566655555555555 2344455566788899999887
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.81 E-value=8.1 Score=30.17 Aligned_cols=122 Identities=12% Similarity=0.156 Sum_probs=78.8
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCceeEEEeecCCcc---cCCChhhHHHH
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLI---SSYSEKGELEL 107 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~ 107 (163)
+.+.-...+++.-|.+.-. ..|++.... ..++|.+.|.+.|+.+..|.||=-++++..+.+ +...+ .+..|
T Consensus 307 gl~GrdmealAvGL~e~~~-~~yl~~Rv~----Qv~YL~~~l~~~GVpi~~paGGHavfvda~~~lphip~eqF-paqal 380 (471)
T COG3033 307 GLAGRDMEALAVGLREGVN-FDYLAHRVA----QVQYLADGLEEAGVPIVQPAGGHAVFVDAGKFLPHIPAEQF-PAQAL 380 (471)
T ss_pred cccchhHHHHHHHHHHhcC-cHHHHHHHH----HHHHHHHHHHhcCCeeEecCCCceEEeehhhhcCCCChhhC-cHHHH
Confidence 3455555566655654321 234443333 467899999999999999999988999876543 33333 67888
Q ss_pred HHHHHHhcCeEEcCCCCC--CCC---------CCceEEEEEec--CChhHHHHHHHHHHHHHHH
Q 042816 108 WDKLLNVAKVNVTPGSSC--HCI---------EPGWFSFSFTL--LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 108 ~~~l~~~~gi~v~pg~~f--~~~---------~~~~iRi~~~~--~~~~~l~~~~~~l~~~~~~ 158 (163)
+..|.++.||...---.| +.+ .-+-+|+.+.. -+.+.|+-.++.+.++.+.
T Consensus 381 a~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 381 ACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred HHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhc
Confidence 888888899997653222 211 12579999864 1446677777776665543
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.57 E-value=7.9 Score=30.29 Aligned_cols=92 Identities=13% Similarity=0.147 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCccccC-CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC---CCceE
Q 042816 58 RERLRRLYVKFVAGLRQLGIECAKS-NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI---EPGWF 133 (163)
Q Consensus 58 ~~~~~~~~~~l~~~l~~~g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~---~~~~i 133 (163)
.+...+|.+.+.+.|.+.|++.... .-+=.+.+++.... .|.. -+++.++.-+|.+.--+.++.. .|+.+
T Consensus 323 q~qV~~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G-----~dGa-rvE~vle~~~I~~NKNtvpGD~Sal~PgGi 396 (477)
T KOG2467|consen 323 QKQVLKNAKALASALISRGYKLVTGGTDNHLVLVDLRPKG-----VDGA-RVEKVLELCHIALNKNTVPGDKSALSPGGI 396 (477)
T ss_pred HHHHHHHHHHHHHHHHHcCceEecCCccceEEEEeccccC-----CchH-HHHHHHHHhhhhhcCCcCCCCccccCCCce
Confidence 3344557888999999998776532 22333456775432 1333 3334445467776555555432 28899
Q ss_pred EEEEec-----CChhHHHHHHHHHHHH
Q 042816 134 SFSFTL-----LTEKDIHVVMERIRRI 155 (163)
Q Consensus 134 Ri~~~~-----~~~~~l~~~~~~l~~~ 155 (163)
||.... ..++++++..+-|.++
T Consensus 397 RiGtPAmTsRG~~e~df~~v~~fi~~a 423 (477)
T KOG2467|consen 397 RIGTPAMTSRGFGEEDFEKVADFIDRA 423 (477)
T ss_pred eccchhhcccCccHHHHHHHHHHHHHH
Confidence 998643 2445555555555443
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=89.54 E-value=8.5 Score=30.02 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=37.6
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcccC--CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARFSS--VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~~~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
-++...|++++ +++..+.+.......+ .++.....+...++. +....+...++...+.+.|+++
T Consensus 201 ~~d~~gG~v~~-~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~t-------l~~R~~~~~~~a~~la~~L~~~ 266 (377)
T TIGR01324 201 HSDIMIGTVVA-NARTWDQLREHSYLMGQMVDADDAYTTLRGLRT-------LGVRLKQHQESSLAIAKWLSEQ 266 (377)
T ss_pred CCCceEEEEEe-CHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 34578999999 8888777765444333 344333333333332 3333555566666788888776
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.70 E-value=9.4 Score=29.42 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc----CCccccCC----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQL----GIECAKSN----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSC 125 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f 125 (163)
+...|+.--...+++.+.++.. +++...|. -|-.+....| ....+.+.|.+ +||.. .|
T Consensus 304 i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp---------~~~~V~qaLi~-rGVig----D~ 369 (407)
T COG3844 304 ITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP---------HGYQVMQALID-RGVIG----DF 369 (407)
T ss_pred HHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecC---------cHHHHHHHHHH-cCccc----cc
Confidence 6778888778888888888775 35554442 2234444444 56888888887 89984 24
Q ss_pred CCCCCceEEEEEec--CChhHHHHHHHHHHHHHHHhhh
Q 042816 126 HCIEPGWFSFSFTL--LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 126 ~~~~~~~iRi~~~~--~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
.. |+-+|+.+++ .+.+++..+++.|.+++.+...
T Consensus 370 R~--P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~a~ 405 (407)
T COG3844 370 RE--PDVLRFGFTPLYVSFVDVWDAVDALEEVLDTLAW 405 (407)
T ss_pred cC--CCeeeecCccceechhHHHHHHHHHHHHHHhhcc
Confidence 43 7899999986 4778999999999999987653
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=88.37 E-value=11 Score=29.66 Aligned_cols=133 Identities=16% Similarity=0.170 Sum_probs=68.8
Q ss_pred ceeEEEEEecC-HHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc-cc
Q 042816 6 GFRISVIYSYN-NSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE-CA 80 (163)
Q Consensus 6 G~RiG~~i~~~-~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~ 80 (163)
..=.|.+++.+ +++.+.+....... .+++.....+..-++.- ....+...++...+.+.|+++ .++ +.
T Consensus 209 dv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl-------~~R~~~~~~nA~~lA~~L~~hp~V~~V~ 281 (386)
T PF01053_consen 209 DVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTL-------PLRMERQNENAEALAEFLEEHPKVKRVY 281 (386)
T ss_dssp SE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHTSTTEEEEE
T ss_pred ceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcH-------HHHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 34478888844 57888877666543 34444444455555542 333444556778889999887 432 33
Q ss_pred cC----------------CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeE-E------------cCCCC--CC---
Q 042816 81 KS----------------NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVN-V------------TPGSS--CH--- 126 (163)
Q Consensus 81 ~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~-v------------~pg~~--f~--- 126 (163)
.| .+|-.+.+++.... .....|.+.| ++. . .|... ..
T Consensus 282 yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~-----~~~~~f~~~l----~l~~~~~SlGg~~SLi~~p~~~~h~~~~~ 352 (386)
T PF01053_consen 282 YPGLPSHPQHELAKRQMSGGGGLLSFELKGGE-----EAARRFLDAL----KLFSIAPSLGGVESLISHPASTSHRSLSP 352 (386)
T ss_dssp ETTSTTSTTHHHHHHHCSSCTSEEEEEESSHH-----HHHHHHHHH-----SSSEESSS-SSSS-EEEETTCTTTTTSCH
T ss_pred EcccccccceeeeeecccccCceeEEEeccch-----hhhHhHHhhh----hhHhhhhhcCCcccccccccchhhccCCh
Confidence 22 22225566776521 1234444433 332 1 12110 00
Q ss_pred ------CCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 127 ------CIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 127 ------~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
...++.+|+|++- |+.+..++-|.++++
T Consensus 353 e~~~~~Gi~~~liRlSvGl---Ed~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 353 EERAEAGISDGLIRLSVGL---EDPDDLIADLEQALE 386 (386)
T ss_dssp HHHHHTTS-TTEEEEE--S---S-HHHHHHHHHHHHH
T ss_pred hhhhccCCCCCeeEEEecc---CCHHHHHHHHHHhcC
Confidence 0125789999997 566777777777654
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.33 E-value=10 Score=29.31 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=79.2
Q ss_pred eeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--C----Cc
Q 042816 7 FRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL--G----IE 78 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g----~~ 78 (163)
+-++-+.+ ++++.-.+.--.. .++-|++.-+++.+.|+--. -+++.+.-...-..+...|+++ . ++
T Consensus 283 ~Pvsavl~-~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~-----eekL~era~~lG~~l~~~L~~l~~~~p~~v~ 356 (427)
T KOG1402|consen 283 YPVSAVLA-DDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIV-----EEKLVERAAKLGEILRDQLNKLQKKFPHVVK 356 (427)
T ss_pred eeeEEEEe-cHHHHhccCCCccccccCCChHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccccccchhh
Confidence 34666777 7777665433322 24678888766665554321 1334444444555566666655 1 34
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
..+.. |++.-+.+... +.+..++.++|-.+- ++|++.-|-. .+-||+.-.. +++++++++++.|.+.+.
T Consensus 357 ~VRGr-Gl~~ai~i~~~--~~~~~~aw~~cl~lk-~~g~LAkptH------~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 357 EVRGR-GLLNAIVINPS--KTSGQDAWDVCLALK-ENGLLAKPTH------GNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred eeecc-ceEEEEEeccc--cccchhHHHHHHccc-ccccccCCCC------CCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 44444 44444444321 011136778887654 4899877643 3578888643 588999999999988764
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=88.10 E-value=12 Score=29.89 Aligned_cols=42 Identities=12% Similarity=-0.029 Sum_probs=29.0
Q ss_pred cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc
Q 042816 30 SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE 78 (163)
Q Consensus 30 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 78 (163)
.++|++....+...|+.- +..+++. .++...+.+.|+++ .++
T Consensus 272 ~~~sp~~a~l~~rgL~Tl---~lR~~r~----~~Na~~la~~L~~~p~V~ 314 (432)
T PRK06702 272 NCMSPFNAYISNIGLETL---HLRMERH----SENALAVAKWLADHERIE 314 (432)
T ss_pred CCCCHHHHHHHHhccCcH---HHHHHHH----HHHHHHHHHHHHhCCCcc
Confidence 467777777788888764 3334444 47888899999887 443
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=86.30 E-value=14 Score=28.65 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-CCccccC-C---ceeEEE-eecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-
Q 042816 54 ININRERLRRLYVKFVAGLRQL-GIECAKS-N---GGFYCW-ADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH- 126 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~-~---~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~- 126 (163)
+++..+.-+++.+++.+.|.++ ++.+..+ . .+++++ +.++.. .+ .+..++.+.|.+ +||.+.+.....
T Consensus 257 l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~-~~r~~l~~~L~~-~gI~~~~~~~~~~ 331 (380)
T TIGR03588 257 LDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQE---FG-CTRKEVFEALRA-AGIGVQVHYIPVH 331 (380)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCc---CC-CCHHHHHHHHHH-CCCCcccCCcccc
Confidence 3555555566677777888776 5554332 1 223332 233320 01 156788888765 899887432110
Q ss_pred ---------CCC---------CceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 127 ---------CIE---------PGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 127 ---------~~~---------~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
... ...+++.+.. .+.++++..++.|+++
T Consensus 332 ~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~ 379 (380)
T TIGR03588 332 LQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKV 379 (380)
T ss_pred cChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 000 1456665542 4677888777777665
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=83.62 E-value=20 Score=28.25 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=72.0
Q ss_pred EEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc-cCCceeE
Q 042816 11 VIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDT--KFVQKFININRERLRRLYVKFVAGLRQLGIECA-KSNGGFY 87 (163)
Q Consensus 11 ~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-~~~~g~~ 87 (163)
-|.++++..+..+.+.-.---..++.......++.-+ .| ...+.++.+.+..-.+.+.+.-++++-.+. .|..-..
T Consensus 233 i~As~~~~~i~~vs~~YpGRas~sp~ld~~itLl~LG~~g~-~~ll~~r~~~f~~l~erl~~~aee~~e~ll~~p~N~is 311 (389)
T PF05889_consen 233 IMASFDPSGILAVSKEYPGRASASPSLDLFITLLSLGCTGY-GALLKERKASFPYLKERLKKWAEEVGERLLETPRNHIS 311 (389)
T ss_dssp EEEESSHHHHHHHHHTSHSHBTSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTEEBSSSTT-SSE
T ss_pred EEEecCHHHHHHHHHHhhhhhhcccchHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCee
Confidence 3444577888887765543223334444455555544 12 333333333333333333333333342222 1334444
Q ss_pred EEeecCCcccCCChhhHHHHHHHHHHhcCeE----EcCCCCCCC-----CCCceEEEEE-ecCChhHHHHHHHHHHHHHH
Q 042816 88 CWADMSGLISSYSEKGELELWDKLLNVAKVN----VTPGSSCHC-----IEPGWFSFSF-TLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~----v~pg~~f~~-----~~~~~iRi~~-~~~~~~~l~~~~~~l~~~~~ 157 (163)
+-++++.... ....+...|...|-. .||. |.|+..+.. ..-.|+-++- -..++|+++.++++|.++++
T Consensus 312 ~a~tl~~l~~-~~~k~~~~lgs~Lf~-R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 312 MAFTLDTLYE-ISQKDGTFLGSMLFK-RGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp EEEE-TTCCT-CCSSHHHHHHHHHHH-TTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred EEEECccchh-hccchhhhHHHHHHh-CCcccceeeccCCCcccccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 4555553211 111255777777765 6665 444433321 1147888843 33599999999999999874
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PRK02308 uvsE putative UV damage endonuclease; Provisional | Back alignment and domain information |
|---|
Probab=83.18 E-value=18 Score=27.44 Aligned_cols=97 Identities=9% Similarity=0.009 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh---cCCccccCCceeEEEeecCCc--cc-CCChhhHHHHHHHHHHhcCeEEcCCCCCC
Q 042816 53 FININRERLRRLYVKFVAGLRQ---LGIECAKSNGGFYCWADMSGL--IS-SYSEKGELELWDKLLNVAKVNVTPGSSCH 126 (163)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~~l~~---~g~~~~~~~~g~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~~gi~v~pg~~f~ 126 (163)
-.++..+....|.+.+.+.|+- +++.+.+-.+.++=|...|+. +. ..-.....+-+..+.+++|+.+.--.
T Consensus 35 ~~~~l~~~~~~Nl~~l~~~l~~~~~~~I~~~R~sS~l~P~~~h~~~~~w~~~~~~~~~~~~~g~~~~~~~irls~Hp--- 111 (303)
T PRK02308 35 REEKLEEIALSNLENLLRILKYNIAHGIGLFRLSSSLIPLATHPELEGWDYIEPFKEELREIGEFIKEHNIRLSFHP--- 111 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEcccCcCCCCCChhhcccCCCCCCHHHHHHHHHHHHHcCCCeeccC---
Confidence 4567777777777777777754 378777766665444444421 11 11112333444445555777543211
Q ss_pred CCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 127 CIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 127 ~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
+.+ +++++.+++..+..++.|...++
T Consensus 112 ---~y~--inL~S~~~ev~e~Si~~L~~~~~ 137 (303)
T PRK02308 112 ---DQF--VVLNSPKPEVVENSIKDLEYHAK 137 (303)
T ss_pred ---hhh--hcCCCCCHHHHHHHHHHHHHHHH
Confidence 111 22233245555666666655444
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.52 E-value=22 Score=28.03 Aligned_cols=64 Identities=9% Similarity=0.061 Sum_probs=37.4
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
-.++..|+++. ++++.+.+....... +.+++....+..-++. +....+...++...+.+.|+++
T Consensus 215 h~d~~~G~v~~-~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~T-------l~lR~~~~~~na~~lA~~L~~h 280 (395)
T PRK05967 215 HSDILLGTVSA-NEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRT-------MGIRLEHHRKSALEIARWLEGR 280 (395)
T ss_pred CCCeeEEEEEc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHcCccc-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 34678898887 777777665444433 3455543333333333 2333344456677788888887
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=81.52 E-value=20 Score=27.60 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=56.7
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc-------------------cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF-------------------SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLY 65 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~-------------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 65 (163)
+.---|.+++.++++.+.++.+... +.++.+...++..-|+. ++...+.-+++.
T Consensus 178 ~~geGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~-------L~~~~~~R~~~a 250 (363)
T PF01041_consen 178 TTGEGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKR-------LDEIIARRRENA 250 (363)
T ss_dssp -SSS-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHT-------HHHHHHHHHHHH
T ss_pred cCCCCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHH-------hhhhHHHHHHHH
Confidence 3344689999778888888776542 11233333333333332 333344444567
Q ss_pred HHHHHHhhhc-CCcc-ccCCc----eeE-EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCC
Q 042816 66 VKFVAGLRQL-GIEC-AKSNG----GFY-CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGS 123 (163)
Q Consensus 66 ~~l~~~l~~~-g~~~-~~~~~----g~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~ 123 (163)
+.+.+.|.++ ++.. ..+.+ +++ +.+.+++... .+-.++.+.|.+ .||.+.+..
T Consensus 251 ~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~----~~rd~l~~~L~~-~GI~~~~~~ 310 (363)
T PF01041_consen 251 QRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEAL----ADRDELVEALRA-RGIETRPHY 310 (363)
T ss_dssp HHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGC----STHHHHHHHHHH-TTBEEBCST
T ss_pred HHHHHHHhcCCCccccccccccccccccccccccccccc----chHHHHHHHHHH-CCCcccccc
Confidence 7777778777 5422 22222 222 2333443100 145788888876 899998755
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=81.49 E-value=25 Score=28.00 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=21.4
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 130 PGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 130 ~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
++-+|||++- |+.+..++-|.+++++.+
T Consensus 402 ~~liRlsvGl---Ed~~dL~~Dl~~Al~~~~ 429 (431)
T PRK08248 402 PGLVRLSVGT---EAIDDILDDLRQAIRQSQ 429 (431)
T ss_pred CCeEEEEecc---CCHHHHHHHHHHHHHhhh
Confidence 6789999997 566777777777776544
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.17 E-value=22 Score=27.17 Aligned_cols=140 Identities=13% Similarity=0.149 Sum_probs=74.0
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc--c--cCCChHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR--F--SSVSAPSQNLLVSML---SDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~--~--~~~s~~~q~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
|.-++.+++ .+++.+++..... + ++-|+.+=++....+ ++... .++-.++-+. ...+...++.- .+
T Consensus 284 GhPVa~Vat-tkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~L-q~ha~~vG~~----L~~lL~~~k~k-h~ 356 (452)
T KOG1403|consen 284 GHPVAAVAT-TKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENL-QEHAQQVGEK----LEVLLRRLKQK-HE 356 (452)
T ss_pred CCeeeEEec-cHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhhH-HHHHHHHHHH----HHHHHHHHhhh-cc
Confidence 677888888 8999999987544 2 455666655444444 33322 3333333333 22233333221 12
Q ss_pred cc--cCCceeEEEeecCCcc--cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE--ecCChhHHHHHHHHH
Q 042816 79 CA--KSNGGFYCWADMSGLI--SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF--TLLTEKDIHVVMERI 152 (163)
Q Consensus 79 ~~--~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~--~~~~~~~l~~~~~~l 152 (163)
+. .-..|+|+=+++-+.- +-+..+.+..+...|.+.++|++..- .+..+-+.|-- .. ++++..+.+..|
T Consensus 357 ~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaD----GPh~NilKiKPPmCF-neena~e~v~~l 431 (452)
T KOG1403|consen 357 CIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSAD----GPHRNILKIKPPMCF-NEENADEFVLGL 431 (452)
T ss_pred ceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecC----CCCCceeecCCCccc-ChhhHHHHHHHH
Confidence 21 1245777777775422 23333456667777877778988641 11133444322 12 556666666666
Q ss_pred HHHHH
Q 042816 153 RRISQ 157 (163)
Q Consensus 153 ~~~~~ 157 (163)
.+++.
T Consensus 432 d~iLT 436 (452)
T KOG1403|consen 432 DEILT 436 (452)
T ss_pred HHHHH
Confidence 66553
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.42 E-value=28 Score=27.79 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=26.2
Q ss_pred CceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 130 PGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 130 ~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
..++||+++. .+.++++...+.+.+.+..+..
T Consensus 389 ~~~iRis~G~y~t~~di~~~~~~i~~~v~~~~~ 421 (428)
T KOG1549|consen 389 HSSIRISIGRYTTEEDIDYLVDAIKKLVSLLRE 421 (428)
T ss_pred cceeEEeeeeeCcHHHHHHHHHHHHHHHHhccc
Confidence 6799999975 4778899999999988876654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 163 | ||||
| 1ynu_A | 473 | Crystal Structure Of Apple Acc Synthase In Complex | 2e-38 | ||
| 1m7y_A | 435 | Crystal Structure Of Apple Acc Synthase In Complex | 2e-38 | ||
| 1b8g_A | 429 | 1-aminocyclopropane-1-carboxylate Synthase Length = | 2e-38 | ||
| 3piu_A | 410 | High-Resolution Structure Of Native Malus Domestica | 2e-38 | ||
| 1iax_A | 428 | Crystal Structure Of Acc Synthase Complexed With Pl | 1e-34 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 1e-05 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 6e-05 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 7e-05 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 7e-05 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 1e-04 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 1e-04 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 1e-04 | ||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 7e-04 |
| >pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473 | Back alignment and structure |
|
| >pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435 | Back alignment and structure |
|
| >pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 211 bits (540), Expect = 5e-68
Identities = 68/154 (44%), Positives = 102/154 (66%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
DL LPGFR+ IYS ++ V+AAA K++ F VS+ +Q+LL +MLSD K + +I N +R
Sbjct: 274 DLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKR 333
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L++ K V+GL++ GI C N G +CW DM L+ S + + E+ELW K++ +N++
Sbjct: 334 LKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNIS 393
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
PGSSCHC EPGWF F L E+ + + M+R++
Sbjct: 394 PGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKA 427
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 1e-67
Identities = 64/160 (40%), Positives = 96/160 (60%)
Query: 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRER 60
D+ LPGFR+ +IYS+N+ V+ A+K++ F VS +Q L +MLSD KFV F+ + R
Sbjct: 269 DMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMR 328
Query: 61 LRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
L + + F GL +GI+C K+N G +CW D+ L+ + E+ LW ++N K+NV+
Sbjct: 329 LGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVS 388
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160
PGSS C EPGWF F + + + + + RIRR K
Sbjct: 389 PGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVEK 428
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 9e-12
Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 22/171 (12%)
Query: 3 SLPGFRI-----SVIYSYNNSVLAAAKKLARFSS-VSAPSQNLLVSMLSDTKFVQKFINI 56
+PG+R+ + S L K++ Q L L +T Q+ ++
Sbjct: 256 VVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP--QEHLDQ 313
Query: 57 NRERL--RRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSE-KGELELWDKLL 112
++ +Y+ + + G+ G Y + + + Y + K ++E ++KLL
Sbjct: 314 IVAKIEESAMYL--YNHIGECIGLAPTMPRGAMYLMSRID--LEKYRDIKTDVEFFEKLL 369
Query: 113 NVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKSHS 163
V V PG+ H PG+ + T + V E + RI C+ H+
Sbjct: 370 EEENVQVLPGTIFHA--PGFTRLTTTR----PVEVYREAVERIKAFCQRHA 414
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 1e-11
Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 16/141 (11%)
Query: 19 VLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG 76
+ +++A+ F SQ ++ L +Q +++ + R+L + L + G
Sbjct: 248 QVRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVYKAN-RKL---MLERLPKAG 303
Query: 77 -IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSS--CHCIEPGWF 133
A +G FY +AD+S L ++L A V VTPG G
Sbjct: 304 FTRIAPPDGAFYVYADVSDLTDD-----SRAFAAEILEKAGVAVTPGLDFDPERGA-GTL 357
Query: 134 SFSFTLLTEKDIHVVMERIRR 154
FS+ T DI ++R+
Sbjct: 358 RFSYARATA-DIEEGLDRLEA 377
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 4e-11
Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 19/161 (11%)
Query: 3 SLPGFRI-----SVIYSYNNSVLAAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFINI 56
G+R+ + + V A +LAR + P+Q ++ L+ ++
Sbjct: 248 FATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP---MDYLKE 304
Query: 57 NRERL--RRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLN 113
++L RR Y+ L ++ GI K G FY + I K + E +L+
Sbjct: 305 YMKKLKERRDYI--YKRLNEIPGISTTKPQGAFYIFPK----IEVGPWKNDKEFVLDVLH 358
Query: 114 VAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
A V GS G F F L + + M+R +
Sbjct: 359 NAHVLFVHGSGFGEYGAGHFRAVF-LPPIEILEEAMDRFEK 398
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 8e-11
Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 14/157 (8%)
Query: 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNL-LVSMLSDTKFVQKFININRE 59
++ G+RI + N +++A ++ + P Q + ++ D + V+ ++
Sbjct: 248 NMAGWRIGFMVG-NPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQ 306
Query: 60 RLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNV 119
R R + V GLR+ G Y WA + Y+ G LE KLL AKV+V
Sbjct: 307 R-RDV---LVKGLREAGWMVENPKASMYVWAKIP---EPYAHLGSLEFAKKLLQDAKVSV 359
Query: 120 TPGSSC-HCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155
+PG + F+ + + I+ +
Sbjct: 360 SPGIGFGDYGD-DHVRFALI-ENRDRLRQAVRGIKAM 394
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 1e-10
Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 16/141 (11%)
Query: 19 VLAAAKKLARFSSVSAPS--QNLLVSMLSDTKFVQKFININRE--RLRRLYVKFVAGLRQ 74
++A +KL S+ A Q +L + ++ + R + + LR
Sbjct: 271 IIARMEKLQAIVSLRAAGYSQAVLRGWFDEA---PGWMEDRIARHQAIRDEL--LHVLRG 325
Query: 75 L-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWF 133
G+ G Y + + L + E L A V VTPG+
Sbjct: 326 CEGVFARTPQAGSYLFPRLPKLAVA-PA----EFVKILRLQAGVVVTPGTEFSPHTADSV 380
Query: 134 SFSFTLLTEKDIHVVMERIRR 154
+F+ E RI
Sbjct: 381 RLNFSQDHE-AAVAAARRIVT 400
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-10
Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 29/166 (17%)
Query: 3 SLPGFRI---SVIYSYN---NSVLAAAKKLARF--SSVSAPSQNLLVSMLSDT----KFV 50
GFR+ + S + A K L R SS P+Q+ + +L + K +
Sbjct: 274 FAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEI 333
Query: 51 QKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDK 110
++ I +ER A + N G++ + + L
Sbjct: 334 EQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVHDVDPE-------ALRKH 386
Query: 111 LLNVAKVNVTPGSSCHCIEPGWFSF--SFTLLTEKDIHVVMERIRR 154
L++ + V ++ +F+ + + DI V + I +
Sbjct: 387 LIDKYSIGVIALNA--------TDIRIAFSCVEKDDIPHVFDSIAK 424
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 2e-10
Identities = 21/158 (13%), Positives = 49/158 (31%), Gaps = 22/158 (13%)
Query: 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRE- 59
SLPG RI + + N+ V + + + L+ Q+ + NR
Sbjct: 225 SLPGIRIGWVAA-NHQVTDILRDYRDYTMICAGVFDDLVAQLALAHY---QEILERNRHI 280
Query: 60 -RLRRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKV 117
+ + + + + + ++ + + +LL V
Sbjct: 281 LEENLAIL--DQWIEEEPLVSYIRPAVVSTSFVKIAVDMPME------DFCLQLLQEHGV 332
Query: 118 NVTPGSSCHCI-EPGWFSFSFTLLTEKDIHVVMERIRR 154
+ PG+ G+ F E + +E++ +
Sbjct: 333 LLVPGN---RFERDGYVRLGFACEQE-TLIKGLEKLSQ 366
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 3e-10
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 30 SSVSAPSQNLLVSMLSDTKFVQKFININRE--RLRRLYVKFVAGLRQLGIECAKSNGGFY 87
+S +Q + L++ + + F+ + RE R RR + + GL LG++ + +G FY
Sbjct: 265 TSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLL--LEGLTALGLKAVRPSGAFY 322
Query: 88 CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHV 147
D S + + + L A V V PG+ G S+ +E+++
Sbjct: 323 VLMDTSPIA------PDEVRAAERLLEAGVAVVPGTDFAA--FGHVRLSYA-TSEENLRK 373
Query: 148 VMERIRR 154
+ER R
Sbjct: 374 ALERFAR 380
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 4e-10
Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 23/171 (13%)
Query: 3 SLPGFRI------SVIYSYNNSVLAAAKKLARFSS-VSAPSQNLLVSMLSDTKFVQKFIN 55
+PG+R+ + N + KL++ Q L S+L T +F +
Sbjct: 266 LVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTP--GEFYH 323
Query: 56 INRERL--RRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSE-KGELELWDKL 111
L L + G+ + +G Y + + + E + ++E ++L
Sbjct: 324 NTLSFLKSNADLC--YGALAAIPGLRPVRPSGAMYLMVGIE--MEHFPEFENDVEFTERL 379
Query: 112 LNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKSH 162
+ V+ P + P + T+ +++E RI + C+ H
Sbjct: 380 VAEQSVHCLPATCFEY--PNFIRVVITV----PEVMMLEACSRIQEFCEQH 424
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 7e-10
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 62 RRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP 121
RR V L ++G+ K G FY + + + S+ + + +L A+V V P
Sbjct: 297 RRKLV--WKRLNEMGLPTVKPKGAFYIFPRIRDTGLT-SK----KFSELMLKEARVAVVP 349
Query: 122 GSSCHCIEPGWFSFSF-TLLTEKDIHVVMERIRR 154
GS+ G+ S+ T + + M+R+ R
Sbjct: 350 GSAFGKAGEGYVRISYAT--AYEKLEEAMDRMER 381
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 7e-10
Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 14/124 (11%)
Query: 3 SLPGFRISVIYSYNNSVLAAAKKL--ARFSSVSAPSQN-LLVSMLSDTKFVQKFININRE 59
++ GFR+ N ++ A KK + + Q+ + ++ F+++ N+ +
Sbjct: 256 NMSGFRVGFAVG-NKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKT 314
Query: 60 RLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNV 119
R R F A L + + + GG Y W + S + L+ + V
Sbjct: 315 R-RDR---FEAMLAKADLPFVHAKGGIYVWLETPPGYDS------EQFEQFLVQEKSILV 364
Query: 120 TPGS 123
PG
Sbjct: 365 APGK 368
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 8e-10
Identities = 35/162 (21%), Positives = 52/162 (32%), Gaps = 27/162 (16%)
Query: 1 DLSLPGFRI------SVIYSYNNSVLAAAKKLARFSSVSAPS--QNLLVSMLSDTKFVQK 52
LSLPG RI +Y A V APS Q ++V T +
Sbjct: 249 SLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATGDINA 308
Query: 53 FININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLL 112
+ + R + GL ++G C K +G FY + S +K
Sbjct: 309 Y------KENRDLL--YEGLTRIGYHCFKPDGAFYMFVKALEDDS-------NAFCEKAK 353
Query: 113 NVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
V + C PGW S+ + + I M +
Sbjct: 354 E-EDVLIVAADGFGC--PGWVRISYC-VDREMIKHSMPAFEK 391
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-09
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 13/97 (13%)
Query: 29 FSSVSAPSQNLLVSMLSD--TKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGF 86
F+ S SQ ++ L+ + + K I +E + + LG +
Sbjct: 308 FNGASNISQAGALACLTPEGLEAMHKVIGFYKEN-TNI---IIDTFTSLGYDVYGGKNAP 363
Query: 87 YCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGS 123
Y W S +++ ++L V TPGS
Sbjct: 364 YVWVHFPNQSS-------WDVFAEILEKTHVVTTPGS 393
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 1e-09
Identities = 32/140 (22%), Positives = 50/140 (35%), Gaps = 17/140 (12%)
Query: 19 VLAAAKKLA--RFSSVSAPSQNLLVSMLSDTKFVQKFININRE--RLRRLYVKFVAGLRQ 74
++ A KL F S SQ + K ++ IN + RR V + ++
Sbjct: 240 IIEAILKLQQNLFISAPTISQYAALKAF--EKETEREINSMIKEFDRRRRLV--LKYVKD 295
Query: 75 LGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFS 134
G E G +Y + + I E KLL V +TPG +
Sbjct: 296 FGWEVNNPIGAYYVFPN----IGEDGR----EFAYKLLKEKFVALTPGIGFGSKGKNYIR 347
Query: 135 FSFTLLTEKDIHVVMERIRR 154
S+ E +I +ERI+
Sbjct: 348 ISYANSYE-NIKEGLERIKE 366
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-09
Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 16/129 (12%)
Query: 29 FSSVSAPSQNLLVSMLS--DTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGF 86
F+ S Q ++ L K + I +E ++ ++G +
Sbjct: 320 FNGASNIVQAGGLACLQPEGLKEMNAMIKFYKEN-AQI---LKTTFTEMGFSVYGGDDAP 375
Query: 87 YCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSC-HCIEPGWFSFSFTLLTEKDI 145
Y W G S +++ ++L + TPGS E G+ S + ++I
Sbjct: 376 YIWVGFPGKPS-------WDVFAEILERCNIVTTPGSGYGPAGE-GFVRASAF-GSRENI 426
Query: 146 HVVMERIRR 154
+ R +
Sbjct: 427 LEAVRRFKE 435
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 5e-09
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 34/172 (19%)
Query: 5 PGFRI-------SVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININ 57
GFRI ++ + K+ F + A SQ + + L F + +
Sbjct: 251 TGFRIGWIIAEGEIL-----KKVLMQKQPIDFCA-PAISQYIALEYLKRGYFEKYHL--- 301
Query: 58 RERLRRLYVK----FVAGLRQL--GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKL 111
E Y + + L E K G + + ++L
Sbjct: 302 -EGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEGADGI------SFANEL 354
Query: 112 LNVAKVNVTPGSSCHCIEPG--WFSFSFTLLTEKDIHVVMERIRRISQTCKS 161
+ V V PG + E G +F+ ++++I I+++++ K
Sbjct: 355 MEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIP---IGIKKLAKLYKE 403
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-08
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 51 QKFININRE--RLRRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSEKGELEL 107
Q + RR Y+ + L + G+EC K +G FY + ++ S L+
Sbjct: 286 QDCVQEMLAAFAERRRYM--LDALNAMPGLECPKPDGAFYMFPSIAKTGRS-----SLDF 338
Query: 108 WDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
+LL+ +V PG++ S+ I MER+ +
Sbjct: 339 CSELLDQHQVATVPGAAFGA--DDCIRLSYA-TDLDTIKRGMERLEK 382
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-08
Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 17/129 (13%)
Query: 29 FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYC 88
F+ S P+Q V+ LS + I+ RE L L G E Y
Sbjct: 274 FNGASIPAQEAGVAGLSILP-QLEAIHYYREN-SDL---LRKALLATGFEVFGGEHAPYL 328
Query: 89 WADM--SGLISSYSEKGELELWDKLLNVAKVNVTPGSS-CHCIEPGWFSFSFTLLTEKDI 145
W + + +L+D L + +TPG G+ FS +DI
Sbjct: 329 WVKPTQANISD-------RDLFDFFLREYHIAITPGIGFGRSGS-GFVRFSSL-GKREDI 379
Query: 146 HVVMERIRR 154
ER++
Sbjct: 380 LAACERLQM 388
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 3e-08
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 62 RRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP 121
R+ +V V L+++G++ + G FY + + G +++ ++LL KV + P
Sbjct: 305 RKNFV--VERLKKMGVKFVEPEGAFYLFFKVRG--------DDVKFCERLLEEKKVALVP 354
Query: 122 GSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
GS+ PG+ SF + + + ++RI
Sbjct: 355 GSAFLK--PGFVRLSFA-TSIERLTEALDRIED 384
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-07
Identities = 21/169 (12%), Positives = 51/169 (30%), Gaps = 24/169 (14%)
Query: 2 LSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPS--QNLLVSMLS----DTKFVQKFIN 55
+ LPG R +I + + V+ A + +++ + +++ +
Sbjct: 277 IGLPGMRTGIIVA-DAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKP 335
Query: 56 INRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGL-ISSYSEKGELELWDKLLNV 114
+++ L + K G + W L IS+ L+L+++L
Sbjct: 336 FYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPIST------LDLYERLKA- 388
Query: 115 AKVNVTPGSSCHCIEPGWFS--------FSFTLLTEKDIHVVMERIRRI 155
+ P S E+ + ++ I +
Sbjct: 389 KGTLIVPSEYFFPGVDVSDYQHAHECIRMSIA-ADEQTLIDGIKVIGEV 436
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-07
Identities = 24/141 (17%), Positives = 43/141 (30%), Gaps = 17/141 (12%)
Query: 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVK----FVAGLRQLGIECAKSNGGF 86
+ + P Q L L + V L +G++ +GG+
Sbjct: 272 TCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGY 331
Query: 87 YCWADMSGLISSYSEKGELELWD-----KLLNVAKVNVTPGSS------CHCIEPGWFSF 135
+ AD+S L + S+ E +D + K+ P S+ E F
Sbjct: 332 FIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFE-KLVRF 390
Query: 136 SFTLLTEKDIHVVMERIRRIS 156
F + + E R +
Sbjct: 391 CFI-KKDSTLDAAEEIFRAWN 410
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 3e-07
Identities = 34/172 (19%), Positives = 57/172 (33%), Gaps = 31/172 (18%)
Query: 5 PGFRI-------SVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININ 57
PG RI I + AK+ A S A + L L + +
Sbjct: 264 PGLRIGMVAGSKEFI-----RKIVQAKQSADLCS-PAITHRLAARYLERYDL-LEQLKPT 316
Query: 58 RERLRRLYVKFVAGLRQ-----LGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLL 112
E RR + L + G++ KS GG + W + ++ E+++
Sbjct: 317 IELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTW------EMFEYAK 370
Query: 113 NVAKVNVTPGSSCHCIEPG--WFSFSFTLLTEKDIHVVMERIRRISQTCKSH 162
KV PG + SF L ++ I E I+R+ + +
Sbjct: 371 R-KKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIV---EGIKRLREVVLEY 418
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 3e-07
Identities = 28/156 (17%), Positives = 54/156 (34%), Gaps = 15/156 (9%)
Query: 6 GFRISVIYSYNNSVLAAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFININRE--RLR 62
G R+ + + N +++ A KLA+ + Q V +L+ F + RE R R
Sbjct: 250 GARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD---DSFFDFVRETYRER 306
Query: 63 RLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP 121
V + L + K +G FY A++ + E L D ++ V P
Sbjct: 307 VETV--LKKLEEHGLKRFTKPSGAFYITAELP--VEDAEEFARWMLTDFNMDGETTMVAP 362
Query: 122 GS---SCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
+ + L + + ++ +
Sbjct: 363 LRGFYLTPGLGKKEIRIACV-LEKDLLSRAIDVLME 397
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 5e-07
Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 16/130 (12%)
Query: 31 SVSAPSQNLLVSML-SDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCW 89
SV+ P+Q L ML ++ + + R++ R + V L + +E G ++
Sbjct: 268 SVNTPAQLALADMLRAEPEHYLALPDFYRQK-RDI---LVNALNESRLEILPCEGTYFLL 323
Query: 90 ADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGW----FSFSFTLLTEKDI 145
D S+ S ++E L V P S F+ E +
Sbjct: 324 VD----YSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK---KESTL 376
Query: 146 HVVMERIRRI 155
ER+R++
Sbjct: 377 LAAAERLRQL 386
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 6e-07
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 27/141 (19%)
Query: 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVK----FVAGLRQLGIECAKSNGGF 86
S P Q + L + + E LR Y + GLR +G+ G +
Sbjct: 254 SAPTPLQAGVAEALKLARREGFY-----EALREGYRRRRDLLAGGLRAMGLRVYVPEGTY 308
Query: 87 YCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGW----FSFSFTLLTE 142
+ A++ G + +L+ A+V + P S+ + +P F+F TE
Sbjct: 309 FLMAELPGWDA-----------FRLVEEARVALIPASAFYLEDPPKDLFRFAFC---KTE 354
Query: 143 KDIHVVMERIRRISQTCKSHS 163
+++H+ +ER+ R+ + +
Sbjct: 355 EELHLALERLGRVVNSPREAE 375
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 7e-07
Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 19/156 (12%)
Query: 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNL-LVSMLSDTKFVQKFININRE 59
+L GFR+ + LA +++ + A + + ++ + + V+ + + RE
Sbjct: 233 NLAGFRLGFALG-SEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRE 291
Query: 60 RLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNV 119
R L+ + Y W + + LE +L+ V +
Sbjct: 292 R-ALG---MAEALKGVL-SLLPPRATMYLWGRLPEGVDD------LEFGLRLVE-RGVAL 339
Query: 120 TPGSS-CHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
PG + G+ + +++ +RIR
Sbjct: 340 APGRGFGPGGK-GFVRIALV-RPLEELLEAAKRIRE 373
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 8e-07
Identities = 33/173 (19%), Positives = 62/173 (35%), Gaps = 37/173 (21%)
Query: 5 PGFRI-------SVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININ 57
PGFRI +I + AK+ + + Q + + +K I
Sbjct: 293 PGFRIGWMVGDPGII-----RKMEIAKQSTDLCT-NVFGQVVAWRYVDGGYL-EKHI--- 342
Query: 58 RERLRRLYVK----FVAGLRQL---GIECAKSNGGFYCWADMSGLISSYSEKGELELWDK 110
+R+ Y + L + G++ K GG + W + I S ++ ++
Sbjct: 343 -PEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGIDS------KKMLER 395
Query: 111 LLNVAKVNVTPGSSCHCIEPG--WFSFSFTLLTEKDIHVVMERIRRISQTCKS 161
+ V PG + + +FT + E I E I+R+++T K
Sbjct: 396 AIK-KGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIM---EGIKRLAETIKE 444
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-06
Identities = 25/166 (15%), Positives = 49/166 (29%), Gaps = 28/166 (16%)
Query: 3 SLPGFRISVIYSYNNSVLAAAKKLAR---FSSVSAPSQNLLVSMLSDTKFVQKFININRE 59
S PG R I ++ +L K R + + Q + D + E
Sbjct: 234 SAPGLRSGFIAG-DSRLLEKYKAF-RAYLGYTSANAIQKASEAAWLDDRHA--------E 283
Query: 60 RLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNV 119
R +Y + R++ FY + + + GE L +
Sbjct: 284 FFRNIYANNLKLARKIFKNTLIYPYSFYVYLPV--------QNGE-NFAKTLYQNEGIIT 334
Query: 120 TPGSSCHCIEPG--WFSFSFTLLTEKDIHVVMERIRRISQTCKSHS 163
P G + + L D ++ + + I ++H+
Sbjct: 335 LPALYLGRNRIGADYVRLA---LVY-DTPLLEKPLEIIETYRENHA 376
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 1e-06
Identities = 21/170 (12%), Positives = 43/170 (25%), Gaps = 19/170 (11%)
Query: 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQ--------NLLVSMLSDTKFVQK 52
G R + SV +Q ++ + + ++
Sbjct: 254 GHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRD 313
Query: 53 FININRERLRRLYVKFVAGLRQLG-IECAKSNGGFYCW------ADMSGLISSYSEKGEL 105
++LR +V A L Q + YC E E
Sbjct: 314 LNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEED 373
Query: 106 ELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155
+ + ++N G + S T+ D +M ++ +
Sbjct: 374 KDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLI-KTQDDFDQLMYYLKDM 421
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 29/173 (16%), Positives = 64/173 (36%), Gaps = 26/173 (15%)
Query: 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRER 60
+ G+RI + S N +L+ A K + +P Q + ++D + F E+
Sbjct: 277 AATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYF-----EK 331
Query: 61 LRRLYVK----FVAGLRQLGIECAKSNGGFYCWADMSGL---------ISSYSEKGELEL 107
+R+ Y+ F + +LG+ G ++ D S + ++ + +
Sbjct: 332 MRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRI 391
Query: 108 WDKLLNVAKVNVTPGSSCHCIE-----PGWFSFSFTLLTEKDIHVVMERIRRI 155
L+N V P + + E F+ + + +ER++ +
Sbjct: 392 SHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVC-KDDAYLENAVERLKLL 443
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-06
Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 27/167 (16%)
Query: 3 SLPGFRISVIYSYNNSVLAAAKKLAR---FSSVSAPSQNLLVSMLSDTKFVQKFININRE 59
++PG R + + +L R S++S P Q ++ D + V NR
Sbjct: 248 NVPGLRSGFVAG-DAELLKNFLLY-RTYHGSAMSIPVQRASIAAWDDEQHVID----NRR 301
Query: 60 RLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNV 119
+ + + + L+Q+ + + FY W + + +L L A + V
Sbjct: 302 LYQEKFERVIPILQQV-FDVKLPDASFYIWLKV-------PDGDDLAFARNLWQKAAIQV 353
Query: 120 TPGS----SCHCIEPG--WFSFSFTLLTEKDIHVVMERIRRISQTCK 160
PG PG + + L D+ ++ I +
Sbjct: 354 LPGRFLARDTEQGNPGEGYVRIA---LVA-DVATCVKAAEDIVSLYR 396
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-06
Identities = 11/105 (10%), Positives = 31/105 (29%), Gaps = 11/105 (10%)
Query: 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVK----FVAGLRQLGIECAKSNGGF 86
SQ + + + + + + + + + L+ +G++ G +
Sbjct: 279 HCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSY 338
Query: 87 YCWADMS--GLISSYSEKGELELWD-----KLLNVAKVNVTPGSS 124
+ D+S E +D ++ + P S
Sbjct: 339 FLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSI 383
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 4e-06
Identities = 24/167 (14%), Positives = 51/167 (30%), Gaps = 19/167 (11%)
Query: 6 GFRI--SVIYSYNNSVLAAAKKLARFS-SVSAPSQNLLVSMLSDTKFV-------QKFIN 55
G+R + + + + KL Q + +++ +
Sbjct: 323 GYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKE 382
Query: 56 INRERLRRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWD----- 109
L + Q+ GI C G Y + + + ++
Sbjct: 383 SVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYC 442
Query: 110 -KLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLT-EKDIHVVMERIRR 154
KLL + V PGS E + F T+L + + V+++++
Sbjct: 443 MKLLEETGICVVPGSGFGQREGTYH-FRMTILPPVEKLKTVLQKVKD 488
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 5e-06
Identities = 30/171 (17%), Positives = 63/171 (36%), Gaps = 34/171 (19%)
Query: 5 PGFRI-------SVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSD--TKFVQKFIN 55
PG R+ + L AK+ A + +Q L+ +L + ++ +++
Sbjct: 242 PGLRVAFAVAHPEAL-----QKLVQAKQGADLHT-PMLNQMLVHELLKEGFSERLERVRR 295
Query: 56 INRERLRRLYVKFVAGLRQL---GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLL 112
+ RE+ + + + L + + + GG + W ++ +S+ L+ + L
Sbjct: 296 VYREKAQAM----LHALDREVPKEVRYTRPKGGMFVWMELPKGLSA------EGLFRRAL 345
Query: 113 NVAKVNVTPGSSCHCIEPG--WFSFSFTLLTEKDIHVVMERIRRISQTCKS 161
V PG G S+ L + I E +RR+ + K
Sbjct: 346 E-ENVAFVPGGPFFANGGGENTLRLSYATLDREGIA---EGVRRLGRALKG 392
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 9e-06
Identities = 22/95 (23%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 31 SVSAPSQNLLVSML-SDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCW 89
AP Q + L ++ +V N R R R AGL ++G S G ++
Sbjct: 265 VGGAPFQPAVALALDTEDAWVAALRNSLRAR-RDR---LAAGLTEIGFAVHDSYGTYFLC 320
Query: 90 ADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSS 124
AD E L V P S+
Sbjct: 321 AD----PRPLGYDDSTEFCAALPEKVGVAAIPMSA 351
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-05
Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 23/169 (13%)
Query: 6 GFRI--SVIYSYNNSVLAAAKKLARFS-SVSAPSQNLLVSMLSDTKFV-------QKFIN 55
G R I ++ V K+A + + Q L +++ K + +
Sbjct: 324 GKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYKAEKD 383
Query: 56 INRERL--RRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWD--- 109
L R + +L GI C ++ G Y + + +
Sbjct: 384 GILASLARRAKAL--EHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAF 441
Query: 110 ---KLLNVAKVNVTPGSSCHCIE-PGWFSFSFTLLTEKDIHVVMERIRR 154
+LL + V PGS + F + L E I V+ R
Sbjct: 442 YALRLLESTGIVVVPGSGFGQVPGTWHFRCTI-LPQEDKIPAVISRFTV 489
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-05
Identities = 19/151 (12%), Positives = 48/151 (31%), Gaps = 30/151 (19%)
Query: 25 KLARFSSVSAPSQNL-----LVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79
L + +S P Q L +++ + + + R R + R+LG+
Sbjct: 378 ALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRR-RETTLY-----RELGMPP 431
Query: 80 AKS--NGGFYCWADMSGLISSYSEKG----------ELELWDKLLNVAKVNVTPGS---S 124
+ +Y D+ + + + ++ ++ + + + PG S
Sbjct: 432 LRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGS 491
Query: 125 CHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155
S L E + + +R++
Sbjct: 492 NRP----SGRASLANLNEYEYAAIGRALRKM 518
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 14/143 (9%), Positives = 38/143 (26%), Gaps = 31/143 (21%)
Query: 30 SSVSAPSQNLLVSMLSDTKFVQKFININRE--RLRRLYVKFVAGLRQLGIECAKS----- 82
S + +Q + +ML + + + + G
Sbjct: 309 SGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIM--KKMFLDNGFNIVYDKDGNE 366
Query: 83 -NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFS------- 134
+ + + S +L +K + +T ++ S
Sbjct: 367 PLADGFYFTVGYKGMDSS------KLIEKFVRYGMCAITLKTT--------GSKRNEAMR 412
Query: 135 FSFTLLTEKDIHVVMERIRRISQ 157
+LL E + +R++ ++
Sbjct: 413 ICTSLLPESQFPDLEKRLQMLNA 435
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-05
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 10/104 (9%)
Query: 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVK----FVAGLRQLGIECAKSNGGF 86
+ + P Q + K + + + L ++G+ GG+
Sbjct: 287 TCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGY 346
Query: 87 YCWADMSGLISSYSEKGELELWD------KLLNVAKVNVTPGSS 124
+ AD S L S E + + + P S+
Sbjct: 347 FMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSA 390
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-05
Identities = 23/167 (13%), Positives = 52/167 (31%), Gaps = 25/167 (14%)
Query: 4 LPGFRISVIYSYNNSVLAAAKKLARFSSVSAPS--QNLLVSMLSDTKFVQKFININRE-- 59
LPG R +I + N+ + A + S++ ++ M+ ++ + +
Sbjct: 253 LPGSRCGIIIA-NDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFY 311
Query: 60 RLRRLYVKFVAGLRQ----LGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVA 115
R +A +R+ K G + W L + +E L+ +L
Sbjct: 312 YQRVQQ--TIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPIT-TE----LLYQRLKA-R 363
Query: 116 KVNVTPGSSCHCIEPGWFS-------FSFTLLTEKDIHVVMERIRRI 155
V + PG + ++ I ++ +
Sbjct: 364 GVLMVPGHYFFPGLDKPWPHTHQCMRMNYV-PEPDKIEAGVKILAEE 409
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-05
Identities = 20/163 (12%), Positives = 47/163 (28%), Gaps = 28/163 (17%)
Query: 5 PGFRISVIYSYNNSVLAAAKKLARFSSVSAP--SQNLLVSMLSDTKFVQKFININRERLR 62
G +S S + + A + +Q D ++ + +
Sbjct: 262 AGSGVSFFAS-SKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHM----LKHA 316
Query: 63 RLY-VKF---VAGLRQ-----LGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLN 113
KF + L + GG++ D+ +S + +
Sbjct: 317 ASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGTAS-------RVVELAKE 369
Query: 114 VAKVNVTPGSSCHCI--EPGWFSF--SFTLLTEKDIHVVMERI 152
A + +T S + +P + + +L ++ V M+
Sbjct: 370 -AGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGF 411
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 7e-05
Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 20/123 (16%)
Query: 45 SDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSN--GGFYCWADMSGLISSYSEK 102
SD ++ + ER +L+ + +++ +Y D+ L K
Sbjct: 407 SDDPYIDIARKLVSERYDQLH-------DAMQAPKDETDTNTHYYSLIDIYRLAEKIYGK 459
Query: 103 G----------ELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152
+++ KL V + G +PG S L +D ++ +++
Sbjct: 460 EFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGA-KPGELRVSQANLPTEDYALIGKQV 518
Query: 153 RRI 155
+
Sbjct: 519 LEL 521
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 8e-05
Identities = 22/173 (12%), Positives = 56/173 (32%), Gaps = 34/173 (19%)
Query: 5 PGFRI-------SVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININ 57
G RI +I + +++ S +Q ++ +L + ++
Sbjct: 267 SGLRIGFLTGPKPLI-----ERVILHIQVSTLHP-STFNQLMISQLLHEWGEEGFMAHV- 319
Query: 58 RERLRRLYVK----FVAGLRQL---GIECAKSNGGFYCWADMSGLISSYSEKGELELWDK 110
+R+ Y +A + E G + W + G+ + +K
Sbjct: 320 -DRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKE-----LIEEK 373
Query: 111 LLNVAKVNVTPGSSCHCIEPG---WFSFSFTLLTEKDIHVVMERIRRISQTCK 160
+ V + PG++ + + SF+ + + + + ++Q K
Sbjct: 374 AVK-MGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMD---VAFQVLAQLIK 422
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 2e-04
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 4 LPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERL 61
L G RI Y N+ + +A R F+ VS + V+ + D +F +K + N ++
Sbjct: 231 LGGLRIG--YGIANANIISAFYKLRAPFN-VSNLALKAAVAAMDDDEFTEKTLENNFSQM 287
Query: 62 RRLYVKFVAGLRQLGIECAKSNGGF 86
++ I+ S F
Sbjct: 288 ELYK----EFAKKHNIKIIDSYTNF 308
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 163 | |||
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.91 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.91 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.9 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.89 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.88 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.88 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.88 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.88 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.88 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.88 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.87 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.87 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.87 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.87 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.87 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.87 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.86 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.86 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.86 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.86 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.86 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.86 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.86 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.86 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.86 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.86 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.86 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.86 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.85 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.85 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.85 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.85 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.85 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.85 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.85 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.85 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.85 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.85 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.85 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.85 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.84 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.84 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.84 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.84 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.84 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.84 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.84 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.84 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.83 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.83 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.83 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.83 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.82 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.82 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.82 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.71 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.82 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.82 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.82 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.81 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.81 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.81 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.8 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.8 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.8 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.8 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.79 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.78 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.78 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.77 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.76 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.75 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.75 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.75 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.73 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.72 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.72 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.71 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.71 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.71 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.67 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.66 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.61 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.61 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.61 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.59 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.57 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.56 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.56 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.56 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.55 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.54 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.54 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.54 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.52 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.52 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.51 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.5 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.48 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.48 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.48 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.47 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.47 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.46 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.46 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.46 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.45 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.45 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.43 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.43 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.41 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.41 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.41 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.4 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.4 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.39 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.39 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.39 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.38 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.38 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.38 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.37 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.37 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.36 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.36 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.36 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.35 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.35 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.34 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.34 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.34 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.34 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.33 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.32 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.32 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.32 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.32 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.31 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.31 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.31 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.3 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.3 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.3 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.28 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.27 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.26 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.25 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.25 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.21 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.21 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.19 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.19 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.19 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.17 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.17 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.16 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.15 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.14 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.12 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.11 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.1 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.1 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.08 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.08 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.06 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.05 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.04 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.04 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.04 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.03 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.0 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.0 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 98.93 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 98.47 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 98.9 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 98.87 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 98.86 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 98.85 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 98.82 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 98.77 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 98.76 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 98.72 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 98.72 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 98.7 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 98.69 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 98.66 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 98.66 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 98.64 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 98.64 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 98.61 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 98.58 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 98.55 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 98.55 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 98.53 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 98.53 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 98.5 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 98.47 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 98.46 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 98.43 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 98.39 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 98.38 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 98.37 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 98.37 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 98.33 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 98.26 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 98.21 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 98.2 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 98.16 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 98.11 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 98.08 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 98.05 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 98.03 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 97.96 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 97.9 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 97.87 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 97.86 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 97.63 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 97.59 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 97.48 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 97.48 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 97.48 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 97.33 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 97.21 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 97.17 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 97.15 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 97.01 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 96.56 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 96.2 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 95.65 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 95.05 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 94.67 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 94.38 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 93.59 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 93.49 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 84.01 |
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-23 Score=159.93 Aligned_cols=161 Identities=42% Similarity=0.847 Sum_probs=138.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||++++++++.+.+.+...+++++++.|.++..++.+..++++++++.++.++++++.+.+.|++.|+++.
T Consensus 274 ~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 353 (435)
T 3piu_A 274 DLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCL 353 (435)
T ss_dssp SSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEC
T ss_pred ccCCCceeEEEEEeCCHHHHHHHHHHhhcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 47899999999999667888888887777788999999999999998776778899999999999999999999999999
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
++++|+|+|++++.........+..++++.|++++||.+.||..|+..+++++||+++..+++++++++++|.++++++.
T Consensus 354 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 354 NGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp CCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999986542223335678999998866999999999987668999999986688999999999999998765
Q ss_pred h
Q 042816 161 S 161 (163)
Q Consensus 161 ~ 161 (163)
.
T Consensus 434 ~ 434 (435)
T 3piu_A 434 N 434 (435)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-23 Score=158.16 Aligned_cols=159 Identities=40% Similarity=0.814 Sum_probs=134.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||++++++++++.+.+...++++|++.|.++..++++..++++++++.++.++++++++.+.|+++|+++.
T Consensus 269 ~~g~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 348 (428)
T 1iay_A 269 DMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCL 348 (428)
T ss_dssp TSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred hcCCCCceEEEEEeCCHHHHHHHHHHHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 47899999999999668899988877766789999999999999998755778999999999999999999999898888
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
++++|+|+|++++.........++.++++.|++++||.+.||..|+..+++++||+++..+++++++++++|.+++++.
T Consensus 349 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 427 (428)
T 1iay_A 349 KNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp CCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred CCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhcc
Confidence 8889999999998642112222456889988875699999999887555689999998558999999999999988754
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.8e-23 Score=158.88 Aligned_cols=150 Identities=17% Similarity=0.286 Sum_probs=130.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc---
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL--- 75 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--- 75 (163)
.|| ||+|+||+++ ++++++.+...... +++|++.|.++..+|+++.+ ++++++.++.|+++++++.+.|++.
T Consensus 290 ~~~-~GlriG~v~~-~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 366 (448)
T 3aow_A 290 ILA-PGFRIGWMVG-DPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYL-EKHIPEIRKFYKPRRDAMLEALEEFMPE 366 (448)
T ss_dssp TTC-GGGCCEEEEE-CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred hcc-ccccEEEEEe-CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 377 9999999999 89999999877653 57899999999999988654 7889999999999999999999985
Q ss_pred CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC--CCceEEEEEecCChhHHHHHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI--EPGWFSFSFTLLTEKDIHVVMERIR 153 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~--~~~~iRi~~~~~~~~~l~~~~~~l~ 153 (163)
|+++..|.+|+|+|++++... ++.++++.|++ +||.+.||..|+.. .++++||+++..+++++++++++|.
T Consensus 367 g~~~~~p~~g~~~~v~~~~~~------~~~~l~~~l~~-~gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~ 439 (448)
T 3aow_A 367 GVKWTKPEGGMFIWVTLPDGI------DSKKMLERAIK-KGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLA 439 (448)
T ss_dssp TCEECCCSBSSEEEEECSTTC------CHHHHHHHHHH-TTEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHH
T ss_pred CeEEeCCCccEEEEEEcCCCC------CHHHHHHHHHH-CCcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence 788888999999999998643 67889999987 69999999988643 3689999998757899999999999
Q ss_pred HHHHHhh
Q 042816 154 RISQTCK 160 (163)
Q Consensus 154 ~~~~~~~ 160 (163)
+++++..
T Consensus 440 ~~l~~~~ 446 (448)
T 3aow_A 440 ETIKEEL 446 (448)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-23 Score=161.15 Aligned_cols=148 Identities=15% Similarity=0.183 Sum_probs=124.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChH-HH-------HHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTK-FV-------QKFININRERLRRLYVKFVA 70 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~-~~-------~~~~~~~~~~~~~~~~~l~~ 70 (163)
+||+||+|+||++++++++++.+.+.... ++++.+.|.++..+|+++. ++ ++++++.++.|+++++++.+
T Consensus 252 ~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 331 (427)
T 2hox_A 252 FTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITA 331 (427)
T ss_dssp HTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999558999999988774 6799999999999998642 21 46788899999999999999
Q ss_pred Hhhhc-CCcc--------------ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEE
Q 042816 71 GLRQL-GIEC--------------AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSF 135 (163)
Q Consensus 71 ~l~~~-g~~~--------------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi 135 (163)
.|++. |+.+ ..|++|+|+|++++. ++.++++.|++++||.|.||+.|+. +++++||
T Consensus 332 ~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~--------~~~~~~~~ll~~~gI~v~pg~~f~~-~~~~~Ri 402 (427)
T 2hox_A 332 LLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW--------EEDKDCYQTFQNGRINTQNGVGFEA-SSRYVRL 402 (427)
T ss_dssp HHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS--------GGGCSHHHHHHHTTEECEEGGGGTS-CTTEEEE
T ss_pred HHHhCcCccccccccccccccccccCCCCceEEEEECCC--------cHHHHHHHHHHHCCEEEcCCCccCC-CCCEEEE
Confidence 99987 6543 357789999999985 3467888887669999999999986 5789999
Q ss_pred EEecCChhHHHHHHHHHHHHHHH
Q 042816 136 SFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 136 ~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
|++. +++++++++++|.+++.+
T Consensus 403 s~~~-~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 403 SLIK-TQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp ECSS-CHHHHHHHHHHHHHHHTC
T ss_pred EecC-CHHHHHHHHHHHHHHHhh
Confidence 9998 889999999999998754
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=154.05 Aligned_cols=148 Identities=16% Similarity=0.294 Sum_probs=128.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ ++++++.+...... ++++.+.|.++..+|++. ++++++.++.++++++.+.+.|+++|++
T Consensus 254 ~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 329 (404)
T 2o1b_A 254 GYNMSGFRVGFAVG-NKDMIQALKKYQTHTNAGMFGALQDAAIYALNHY---DDFLEEQSNVFKTRRDRFEAMLAKADLP 329 (404)
T ss_dssp TTTCGGGCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hccCchhheEeEec-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 47889999999999 99999999877653 578999999999998764 5778999999999999999999998999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
+.+|++|+|+|++++... ++.++++.|++++||.+.||..|+...++++||+++. +++++++++++|.+++++
T Consensus 330 ~~~~~~g~~~~~~~~~~~------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 330 FVHAKGGIYVWLETPPGY------DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp EECCCBSSEEEEECCTTC------CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS-CTTHHHHHHHHHHGGGGG
T ss_pred ecCCCcceEEEEeCCCCC------CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 988999999999998543 5678999888668999999998875457899999998 889999999999988765
Q ss_pred h
Q 042816 159 C 159 (163)
Q Consensus 159 ~ 159 (163)
+
T Consensus 403 ~ 403 (404)
T 2o1b_A 403 Y 403 (404)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=155.98 Aligned_cols=150 Identities=15% Similarity=0.207 Sum_probs=128.6
Q ss_pred CCCCceeEEEEEecCHHH--------HHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSV--------LAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~--------~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
||++|+|+||+++ ++++ ++.+.+... ..+++++.|.++..++.+.. .+++++.++.++++++++.+.
T Consensus 272 ~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~ 348 (432)
T 3ei9_A 272 AGFTGVRLGWTVI-PKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEG--LEAMHKVIGFYKENTNIIIDT 348 (432)
T ss_dssp HCTTTTCCEEEEC-CTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccceEEEEE-ChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999 6666 777776654 35689999999999998543 467899999999999999999
Q ss_pred hhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHH
Q 042816 72 LRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMER 151 (163)
Q Consensus 72 l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~ 151 (163)
|+++|+++.++.+|+|+|++++.. ++.+++..|++++||.+.||+.|+..+++++|||+.. +++++++++++
T Consensus 349 L~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~l~~~l~r 420 (432)
T 3ei9_A 349 FTSLGYDVYGGKNAPYVWVHFPNQ-------SSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFG-HRENILEACRR 420 (432)
T ss_dssp HHHTTCCEEECSSSSEEEEECTTS-------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHH
T ss_pred HHHCCceecCCCcceEEEEECCCC-------CHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecC-CHHHHHHHHHH
Confidence 999999999888999999999842 6788999888877999999999986668999999987 99999999999
Q ss_pred HHHHHHHhhhc
Q 042816 152 IRRISQTCKSH 162 (163)
Q Consensus 152 l~~~~~~~~~~ 162 (163)
|.+-...++++
T Consensus 421 l~~~~~~~~~~ 431 (432)
T 3ei9_A 421 FKQLYKHHHHH 431 (432)
T ss_dssp HHHHHTTSCC-
T ss_pred HHHHhhhcccC
Confidence 99887777664
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-22 Score=152.27 Aligned_cols=147 Identities=25% Similarity=0.454 Sum_probs=124.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ ++++++.+...... ++++.+.|.++..+|++.....+++++.++.++++++++.+.|+++|++
T Consensus 235 ~~~~~G~RiG~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 313 (385)
T 1b5p_A 235 AFAMTGWRIGYACG-PKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLK 313 (385)
T ss_dssp TTTCGGGCCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hcCCcccceEEEEe-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 47899999999999 89999999877653 5789999999999997610005678999999999999999999988999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
+.+|++|+|+|++++.. + .++.++++.|++ +||.+.||+.|+. ++++|||++. +.+++++++++|.++++
T Consensus 314 ~~~~~~~~~~~~~~~~~----~-~~~~~l~~~l~~-~gv~v~~g~~f~~--~~~iRis~~~-~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 314 AVRPSGAFYVLMDTSPI----A-PDEVRAAERLLE-AGVAVVPGTDFAA--FGHVRLSYAT-SEENLRKALERFARVLG 383 (385)
T ss_dssp BCCCSBTTEEEEECTTT----C-SSHHHHHHHHHH-TTEECEESGGGTC--TTEEEEECCS-CHHHHHHHHHHGGGGC-
T ss_pred ecCCCeeEEEEEecCCC----C-CCHHHHHHHHHH-CCeEEecccccCC--CCeEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 99999999999998731 0 267889998884 8999999999975 6899999996 99999999999987654
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-22 Score=151.79 Aligned_cols=153 Identities=20% Similarity=0.335 Sum_probs=130.4
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ ++++++.+...... ++++.+.|.++..+|++. ++++++.++.++++++++.+.|+++|++
T Consensus 246 ~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 321 (412)
T 2x5d_A 246 SYNMAGWRIGFMVG-NPELVSALARIKSYHDYGTFTPLQVAAIAALEGD---QQCVRDIARQYQQRRDVLVKGLREAGWM 321 (412)
T ss_dssp CCSCTTSCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ccCCcccceEEEEc-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 47889999999999 99999999877653 678999999999999875 4678899999999999999999988999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
+.+|++|+|+|++++..+. ..++.++++.|++++||.+.||+.|+..+++++||+++. +++++++++++|.+++++
T Consensus 322 ~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~ 397 (412)
T 2x5d_A 322 VENPKASMYVWAKIPEPYA---HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE-NRDRLRQAVRGIKAMFRA 397 (412)
T ss_dssp CCCCSBSSEEEEECCTTTG---GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred ecCCCeeeEEEEEcCCccC---CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 9899999999999975320 014678999887767999999999875457899999998 899999999999999987
Q ss_pred hhh
Q 042816 159 CKS 161 (163)
Q Consensus 159 ~~~ 161 (163)
+..
T Consensus 398 ~~~ 400 (412)
T 2x5d_A 398 DGL 400 (412)
T ss_dssp TTC
T ss_pred cCC
Confidence 653
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-22 Score=153.45 Aligned_cols=149 Identities=15% Similarity=0.251 Sum_probs=123.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSD---TKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
.|+ ||+|+||+++ ++++++.+...... +++|.+.|.++..+|++ +.+ .++++++++.|+++++.+.+.|+++
T Consensus 264 ~~~-~GlRiG~~~~-~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~ 340 (425)
T 2r2n_A 264 IIS-SGLRIGFLTG-PKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGF-MAHVDRVIDFYSNQKDAILAAADKW 340 (425)
T ss_dssp TTC-STTCCEEEEE-EHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcc-CccceEEEec-CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477 9999999999 89999999887653 68899999999999986 334 6889999999999999999999985
Q ss_pred --CC-ccccCCceeEEEeecCCcccCCChhhHHH-HHHHHHHhcCeEEcCCCCCCCC---CCceEEEEEecCChhHHHHH
Q 042816 76 --GI-ECAKSNGGFYCWADMSGLISSYSEKGELE-LWDKLLNVAKVNVTPGSSCHCI---EPGWFSFSFTLLTEKDIHVV 148 (163)
Q Consensus 76 --g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~gi~v~pg~~f~~~---~~~~iRi~~~~~~~~~l~~~ 148 (163)
|+ .+..|++|+|+|++++... ++.+ +.+.|. ++||.+.||+.|+.. +.+++|||++..++++++++
T Consensus 341 ~~~~~~~~~p~~g~~~~~~~~~~~------~~~~~~~~~l~-~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~ 413 (425)
T 2r2n_A 341 LTGLAEWHVPAAGMFLWIKVKGIN------DVKELIEEKAV-KMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVA 413 (425)
T ss_dssp CSSSEEECCCSBSSEEEEEETTCS------CCHHHHHTHHH-HTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHH
T ss_pred CCCCeEEeCCCceEEEEEEeCCCC------CHHHHHHHHHH-HCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHH
Confidence 76 5677899999999998643 3455 455555 599999999999753 25899999984499999999
Q ss_pred HHHHHHHHHHh
Q 042816 149 MERIRRISQTC 159 (163)
Q Consensus 149 ~~~l~~~~~~~ 159 (163)
+++|.+++++.
T Consensus 414 ~~~l~~~l~~~ 424 (425)
T 2r2n_A 414 FQVLAQLIKES 424 (425)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988653
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.3e-22 Score=149.59 Aligned_cols=151 Identities=19% Similarity=0.322 Sum_probs=130.5
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ ++++++.+...... ++++.+.|.++..+|++... ++++++.++.++++++.+.+.|+++|++
T Consensus 234 ~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 311 (389)
T 1gd9_A 234 TFAMTGWRLGFVAA-PSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEMGLP 311 (389)
T ss_dssp TTTCGGGCCEEEEC-CHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hcCCcccceEEEEE-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 37889999999999 89999999877663 67899999999999998632 3488999999999999999999998999
Q ss_pred cccCCceeEEEeecCC-cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSG-LISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
+..|++|+++|++++. .. +..++++.|++++||.+.||..|+..+++++||+++. +++++++++++|.++++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~~~ 384 (389)
T 1gd9_A 312 TVKPKGAFYIFPRIRDTGL------TSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVLK 384 (389)
T ss_dssp CCCCCBTTEECCBCGGGTC------CHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHHHHH
T ss_pred ecCCCeeeEEEEeccCCCC------CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHH
Confidence 8889999999999974 22 6788999888459999999998875457899999997 99999999999999988
Q ss_pred Hhh
Q 042816 158 TCK 160 (163)
Q Consensus 158 ~~~ 160 (163)
+.+
T Consensus 385 ~~~ 387 (389)
T 1gd9_A 385 ERK 387 (389)
T ss_dssp HTT
T ss_pred hcc
Confidence 765
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-22 Score=153.90 Aligned_cols=147 Identities=14% Similarity=0.160 Sum_probs=125.3
Q ss_pred CCCCCceeEEEEEecCHHHHH--------HHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYNNSVLA--------AAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVA 70 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~--------~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (163)
.||++|+|+||+++ ++++++ .+..... ..+++++.|.++..++.+.. .+++++.++.++++++++.+
T Consensus 283 ~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~ 359 (449)
T 3qgu_A 283 YAGFTGVRLGWTVV-PKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG--LKEMNAMIKFYKENAQILKT 359 (449)
T ss_dssp GGTCTTCCCEEEEC-CTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCccceeEEEec-CHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999 777654 3444433 35789999999999998742 47789999999999999999
Q ss_pred HhhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHH
Q 042816 71 GLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 71 ~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
.|+++|+++..|++|+|+|++++ .. ++.++++.|++++||.+.||..|+..+++++||++.. ++++++++++
T Consensus 360 ~L~~~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~-~~e~i~~~l~ 431 (449)
T 3qgu_A 360 TFTEMGFSVYGGDDAPYIWVGFP-GK------PSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG-SRENILEAVR 431 (449)
T ss_dssp HHHHTTCCEEESSSSSEEEEECT-TS------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHH
T ss_pred HHHHCCCeeeCCCCeeEEEEECC-CC------CHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC-CHHHHHHHHH
Confidence 99999999999999999999998 32 6789999998867999999999986668999999887 9999999999
Q ss_pred HHHHHHHH
Q 042816 151 RIRRISQT 158 (163)
Q Consensus 151 ~l~~~~~~ 158 (163)
+|.+++++
T Consensus 432 ~l~~~~~~ 439 (449)
T 3qgu_A 432 RFKEAYGK 439 (449)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99998854
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=148.47 Aligned_cols=150 Identities=19% Similarity=0.280 Sum_probs=129.8
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
.||++|+|+||+++ ++++++.+...... .+++++.|.++..++++. ++++++.++.++++++.+.+.|+++ |+
T Consensus 254 ~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 329 (407)
T 3nra_A 254 TESLSGYRLGVAFG-SRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEA---PGWMEDRIARHQAIRDELLHVLRGCEGV 329 (407)
T ss_dssp TTCCGGGCCEEEEE-CHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCC---TTHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred ccCCCeeeEEEEEc-CHHHHHHHHHHHhhhccCCChHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 47899999999999 99999999887763 567888999999999865 3566788888999999999999998 89
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
.+..|.+|+|+|++++... .+..++++.|++++||.+.||..|+...++++||+++. +.+++++++++|.++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~~~ 403 (407)
T 3nra_A 330 FARTPQAGSYLFPRLPKLA-----VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTLVE 403 (407)
T ss_dssp BCCCCSBSSEECCBCCCBS-----SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS-CHHHHHHHHHHHHHHHH
T ss_pred eeccCCeeEEEEEeCCCCC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHH
Confidence 9999999999999998621 26788999888767999999999986668999999998 99999999999999998
Q ss_pred Hhh
Q 042816 158 TCK 160 (163)
Q Consensus 158 ~~~ 160 (163)
+++
T Consensus 404 ~~~ 406 (407)
T 3nra_A 404 RYR 406 (407)
T ss_dssp HHB
T ss_pred Hhh
Confidence 765
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=151.42 Aligned_cols=151 Identities=17% Similarity=0.262 Sum_probs=125.0
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
||+||+|+||+++.++++++.+..... .++++++.|.++..+|++... ++++++.++.++++++++.+.|+++|+++
T Consensus 276 ~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 354 (447)
T 3b46_A 276 FAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALK-IGYFEKMRQEYINKFKIFTSIFDELGLPY 354 (447)
T ss_dssp TTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred cCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcc-hHHHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence 789999999999866889998887654 367899999999999987543 57789999999999999999999999999
Q ss_pred ccCCceeEEEeecCCcc-cCC--------ChhhHHHHHHHHHHhcCeEEcCCCCCCCC-----CCceEEEEEecCChhHH
Q 042816 80 AKSNGGFYCWADMSGLI-SSY--------SEKGELELWDKLLNVAKVNVTPGSSCHCI-----EPGWFSFSFTLLTEKDI 145 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~-~~~--------~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-----~~~~iRi~~~~~~~~~l 145 (163)
..|++|+|+|++++... +.. +..++.++++.|++++||.+.||+.|+.. +++++|||++. +++++
T Consensus 355 ~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~-~~e~l 433 (447)
T 3b46_A 355 TAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK-DDAYL 433 (447)
T ss_dssp ECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCS-CHHHH
T ss_pred cCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeC-CHHHH
Confidence 89999999999997520 000 00256789998887689999999988742 26899999997 89999
Q ss_pred HHHHHHHHH
Q 042816 146 HVVMERIRR 154 (163)
Q Consensus 146 ~~~~~~l~~ 154 (163)
++++++|.+
T Consensus 434 ~~~~~~l~~ 442 (447)
T 3b46_A 434 ENAVERLKL 442 (447)
T ss_dssp HHHHHHGGG
T ss_pred HHHHHHHHH
Confidence 999999976
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-21 Score=150.49 Aligned_cols=159 Identities=14% Similarity=0.152 Sum_probs=125.3
Q ss_pred C-CCCceeEEEEEe--cCHHHHHHHHHhhcc-cCCChHHHHHHHHhcCC-----hHH--HHHHHHHHHHHHHHHHHHHHH
Q 042816 2 L-SLPGFRISVIYS--YNNSVLAAAKKLARF-SSVSAPSQNLLVSMLSD-----TKF--VQKFININRERLRRLYVKFVA 70 (163)
Q Consensus 2 ~-~~~G~RiG~~i~--~~~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~-----~~~--~~~~~~~~~~~~~~~~~~l~~ 70 (163)
| |+||+|+||+++ .++++++.+.+.... ++++.+.|.++..++++ +.+ ..++.++.++.++++++++.+
T Consensus 318 ~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~ 397 (498)
T 3ihj_A 318 YMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTED 397 (498)
T ss_dssp TTCCSSSCCEEEEEESCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcccceEEEEEecCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 789999999993 289999999887663 67899999999999985 222 124457888999999999999
Q ss_pred Hhhhc-CCccccCCceeEEEeecCC--cc----cCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-CCCceEEEEEecCCh
Q 042816 71 GLRQL-GIECAKSNGGFYCWADMSG--LI----SSYSEKGELELWDKLLNVAKVNVTPGSSCHC-IEPGWFSFSFTLLTE 142 (163)
Q Consensus 71 ~l~~~-g~~~~~~~~g~~~~~~~~~--~~----~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~iRi~~~~~~~ 142 (163)
.|+++ |+++.+|+||||+|++++. .. ...+..++..++..+++++||.+.||+.|+. .+++++|++++. ++
T Consensus 398 ~L~~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~-~~ 476 (498)
T 3ihj_A 398 LFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILP-PV 476 (498)
T ss_dssp HHHTSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCS-CH
T ss_pred HHhcCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCC-CH
Confidence 99998 9999999999999987642 10 0011112333467777779999999999985 457899999985 99
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 042816 143 KDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 143 ~~l~~~~~~l~~~~~~~~~ 161 (163)
+++++++++|.++++++.+
T Consensus 477 e~l~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 477 EKLKTVLQKVKDFHINFLE 495 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887654
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-21 Score=147.45 Aligned_cols=150 Identities=14% Similarity=0.199 Sum_probs=127.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHH-HHHHHHHHHHHHHHHhhhc---
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFINI-NRERLRRLYVKFVAGLRQL--- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~--- 75 (163)
+++||+|+||+++ ++++++.+...... ++++++.|.++..++++..+ .++..+ +++.|+++++.+.+.|.+.
T Consensus 251 ~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 328 (417)
T 3g7q_A 251 LGLPGSRCGIIIA-NDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDL-LRLSETVIKPFYYQRVQQTIAIIRRYLSE 328 (417)
T ss_dssp GTCTTSCCEEEEC-CHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCH-HHHHHHTHHHHHHHHHHHHHHHHHHHCCT
T ss_pred ccCCCcceEEEEe-CHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcch-HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5789999999999 99999999887764 56899999999999998776 555555 8889999999999998774
Q ss_pred -CCccccCCceeEEEeecCC-cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCC-------CceEEEEEecCChhHHH
Q 042816 76 -GIECAKSNGGFYCWADMSG-LISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE-------PGWFSFSFTLLTEKDIH 146 (163)
Q Consensus 76 -g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~-------~~~iRi~~~~~~~~~l~ 146 (163)
|+.+..|++|+|+|++++. .. +..++++.|.+ +||.+.||+.|.... ++++|||++. ++++++
T Consensus 329 ~~~~~~~~~~g~~~~~~~~~~~~------~~~~l~~~l~~-~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~-~~~~i~ 400 (417)
T 3g7q_A 329 ERCLIHKPEGAIFLWLWFKDLPI------TTELLYQRLKA-RGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP-EPDKIE 400 (417)
T ss_dssp TTCEEECCCBSSEEEEECTTCSS------CHHHHHHHHHH-TTEECEEGGGGCTTBSSCCGGGGGEEEEESCS-CHHHHH
T ss_pred CCceeeCCCcceEEEEEcCCCCC------CHHHHHHHHHH-CCEEEECchhhCCCCccccccCCCeEEEEecC-CHHHHH
Confidence 5788889999999999986 33 67889988865 899999999886432 5799999998 999999
Q ss_pred HHHHHHHHHHHHhhh
Q 042816 147 VVMERIRRISQTCKS 161 (163)
Q Consensus 147 ~~~~~l~~~~~~~~~ 161 (163)
+++++|.++++++..
T Consensus 401 ~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 401 AGVKILAEEIERAWR 415 (417)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987654
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=147.01 Aligned_cols=144 Identities=22% Similarity=0.315 Sum_probs=125.5
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSD-TKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
.||+||+|+||+++ ++++++.+...... +++|++.|.++..+|+. + ++++++.++.++++++++.+.|+++|+
T Consensus 223 ~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~ 298 (370)
T 2z61_A 223 LYAMTGWRIGYVIS-NDEIIEAILKLQQNLFISAPTISQYAALKAFEKET---EREINSMIKEFDRRRRLVLKYVKDFGW 298 (370)
T ss_dssp TTTCGGGCCEEEEC-CHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCccceEEEEEE-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 37889999999999 89999999877663 57899999999999986 4 577899999999999999999998898
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
++.+|++|+|+|++++. +..++.+.|++++||.+.||+.|+..+++++||+++. +++++++++++|.++++
T Consensus 299 ~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~-~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 299 EVNNPIGAYYVFPNIGE--------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYAN-SYENIKEGLERIKEFLN 369 (370)
T ss_dssp BCCCCCBTTEECCBCSS--------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCS-CHHHHHHHHHHHHHHHC
T ss_pred eecCCCcceEEEEecCC--------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 88889999999999874 4578899888558999999998875347899999996 99999999999998874
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=148.57 Aligned_cols=151 Identities=12% Similarity=0.134 Sum_probs=127.2
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhccc---CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh-c-C
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFS---SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ-L-G 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g 76 (163)
||+||+|+||++++++++++.+......+ +++++.|.++..+|++. ++++++.++.++++++++.+.|++ + |
T Consensus 240 ~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 316 (399)
T 1c7n_A 240 FNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC---GKWLDGCIKVIDKNQRIVKDFFEVNHPE 316 (399)
T ss_dssp HTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 57899999999994478999888776643 67899999888888764 467889999999999999999998 6 8
Q ss_pred CccccCCceeEEEeecCCc-ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGL-ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
+++.+|.+++++|++++.. . +..++++.|++++||.+.||..|+...++++||+++. +++++++++++|.++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~l~~~l~~l~~~ 389 (399)
T 1c7n_A 317 IKAPLIEGTYLQWIDFRALKM------DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKA 389 (399)
T ss_dssp SBCCCCSBSSEEEEECGGGCC------CHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHH
T ss_pred CeEecCCceEEEEEEcccCCC------CHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc-CHHHHHHHHHHHHHH
Confidence 9999999999999999852 2 5678999887558999999998875457899999998 789999999999999
Q ss_pred HHHhhhc
Q 042816 156 SQTCKSH 162 (163)
Q Consensus 156 ~~~~~~~ 162 (163)
+++++.+
T Consensus 390 l~~~~~~ 396 (399)
T 1c7n_A 390 LKDLKNR 396 (399)
T ss_dssp HHHHC--
T ss_pred HHHHHhc
Confidence 9887654
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-22 Score=152.75 Aligned_cols=146 Identities=19% Similarity=0.206 Sum_probs=117.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHH-------HHHHHHHHHHHHHHHHHHHHHHh
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKF-------VQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
||+||+|+||+++.++++++.+..... .++++.+.|.++..+|+++.. .+++++++++.|+++++.+.+.|
T Consensus 219 ~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 298 (391)
T 3bwn_A 219 TGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVV 298 (391)
T ss_dssp HSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999657899999988876 378999999999999987531 14678999999999999999999
Q ss_pred hhc-CCccccC-------------CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe
Q 042816 73 RQL-GIECAKS-------------NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT 138 (163)
Q Consensus 73 ~~~-g~~~~~~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~ 138 (163)
+++ |+++..| .+|+|+|++++. ...+.+ +++++||.+.||+.|+. +++++|||++
T Consensus 299 ~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~---------~~~~~~-~l~~~gV~v~pg~~fg~-~~~~iRis~~ 367 (391)
T 3bwn_A 299 KESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE---------ETDLVS-ELRRHKVMSRAGERCGS-DKKHVRVSML 367 (391)
T ss_dssp HTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS---------SCCHHH-HHHHTTEECEEGGGGTC-CTTEEEEESC
T ss_pred HhCCCcccccCCccccccccccCCCcceEEEecCCc---------HHHHHH-HHHHCCEEEccCCCCCC-CCCEEEEEec
Confidence 988 6666543 456699999974 123344 45559999999999975 4689999999
Q ss_pred cCChhHHHHHHHHHHHHHHHh
Q 042816 139 LLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 139 ~~~~~~l~~~~~~l~~~~~~~ 159 (163)
. +++++++++++|.+++++.
T Consensus 368 ~-~~e~i~~~~~~L~~~~~~~ 387 (391)
T 3bwn_A 368 S-REDVFNVFLERLANMKLIK 387 (391)
T ss_dssp S-CHHHHHHHHHHHHSCC---
T ss_pred C-CHHHHHHHHHHHHHHHHhh
Confidence 7 8899999999999877653
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=145.15 Aligned_cols=149 Identities=15% Similarity=0.094 Sum_probs=125.6
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----- 75 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----- 75 (163)
++||+|+||+++ ++++++.+..... .++++++.|.++..++++...+++++++.++.|+++++.+.+.|.+.
T Consensus 262 ~~~G~r~G~~~~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~ 340 (427)
T 3ppl_A 262 TLAGAGVSFFLT-SAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYG 340 (427)
T ss_dssp SCTTSSCEEEEC-CHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred cCcCccEEEEEc-CHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 689999999999 8999999988776 36789999999999999843337899999999999999999988663
Q ss_pred CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC-CCCCCC---CCCceEEEEEecCChhHHHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP-GSSCHC---IEPGWFSFSFTLLTEKDIHVVMER 151 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p-g~~f~~---~~~~~iRi~~~~~~~~~l~~~~~~ 151 (163)
++.+..|++|+|+|++++.. ++.++.+.|.+ +||.+.| |..|.. ..++++|||++..+.+++++++++
T Consensus 341 ~~~~~~p~~g~~~~~~~~~~-------~~~~~~~~l~~-~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~ 412 (427)
T 3ppl_A 341 VAQWTVPAGGYFISLDVVPG-------TASRVAELAKE-AGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDG 412 (427)
T ss_dssp CCEECCCSBSSCEEEECSTT-------CHHHHHHHHHH-TTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHH
T ss_pred ceEEeCCCccEEEEEECCcc-------hHHHHHHHHHH-CCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHH
Confidence 47788899999999999863 46778877665 8999999 666653 247899999987678999999999
Q ss_pred HHHHHHHhh
Q 042816 152 IRRISQTCK 160 (163)
Q Consensus 152 l~~~~~~~~ 160 (163)
|.+++++..
T Consensus 413 l~~~l~~~~ 421 (427)
T 3ppl_A 413 VATCVLLAA 421 (427)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987653
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=145.71 Aligned_cols=148 Identities=14% Similarity=0.123 Sum_probs=122.8
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHhhh----c
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSD-TKFVQKFININRERLRRLYVKFVAGLRQ----L 75 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~ 75 (163)
++||+|+||+++ ++++++.+...... ++++.+.|.++..+|++ +.+ +++++++++.|+++++.+.+.|.+ +
T Consensus 260 ~~~GlriG~~~~-~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~l~~~ 337 (422)
T 3d6k_A 260 THAGSGVSFFAS-SKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGL-KAHMLKHAASLAPKFERVLEILDSRLSEY 337 (422)
T ss_dssp SCTTSSCEEEEC-CHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cCcccceEEEEe-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 689999999999 89999999887764 67899999999999998 544 788999999999999999888875 3
Q ss_pred C-CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC-CCCCCC---CCCceEEEEEecCChhHHHHHHH
Q 042816 76 G-IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP-GSSCHC---IEPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 76 g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p-g~~f~~---~~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
| +.+..|++|+|+|++++.. +...+.+.|. ++||.+.| |..|.. ..++++|||++..++++++++++
T Consensus 338 ~~~~~~~p~~g~~~~~~~~~~-------~~~~~~~~l~-~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~ 409 (422)
T 3d6k_A 338 GVAKWTSPTGGYFISVDVVPG-------TASRVVELAK-EAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMD 409 (422)
T ss_dssp TCEEECCCSBSSCEEEEESTT-------CHHHHHHHHH-HTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHH
T ss_pred CceEEeCCCcceEEEEECCCC-------CHHHHHHHHH-HCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHH
Confidence 3 6777889999999999852 3566766555 59999999 566742 13689999998448899999999
Q ss_pred HHHHHHHHhh
Q 042816 151 RIRRISQTCK 160 (163)
Q Consensus 151 ~l~~~~~~~~ 160 (163)
+|.++++++.
T Consensus 410 ~l~~~l~~~~ 419 (422)
T 3d6k_A 410 GFATCVLMAA 419 (422)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=143.64 Aligned_cols=149 Identities=17% Similarity=0.268 Sum_probs=127.5
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc---
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL--- 75 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--- 75 (163)
.|| ||+|+||+++ ++++++.+...... ++++.+.|.++..+|++..+ +++++.++.++++++.+.+.|++.
T Consensus 239 ~~~-~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~ 314 (397)
T 2zyj_A 239 VLS-PGLRVAFAVA-HPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFS--ERLERVRRVYREKAQAMLHALDREVPK 314 (397)
T ss_dssp TTC-GGGCCEEEEC-CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHH--HHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred ccc-ccceeEEEec-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 367 9999999999 89999998876653 56799999999999998743 778999999999999999999885
Q ss_pred CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC--CCceEEEEEecCChhHHHHHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI--EPGWFSFSFTLLTEKDIHVVMERIR 153 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~--~~~~iRi~~~~~~~~~l~~~~~~l~ 153 (163)
|+++..|.+|+|+|++++... ++.++++.|.+ +||.+.||..|+.. .++++||+++..+++++++++++|.
T Consensus 315 g~~~~~~~~g~~~~~~~~~~~------~~~~~~~~l~~-~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~ 387 (397)
T 2zyj_A 315 EVRYTRPKGGMFVWMELPKGL------SAEGLFRRALE-ENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLG 387 (397)
T ss_dssp TSEECCCSBSSEEEEECSTTC------CHHHHHHHHHH-TTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHH
T ss_pred CeEEccCCccEEEEEEcCCCC------CHHHHHHHHHH-CCCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHH
Confidence 688888899999999998543 67889999887 69999999988642 3689999998756899999999999
Q ss_pred HHHHHhh
Q 042816 154 RISQTCK 160 (163)
Q Consensus 154 ~~~~~~~ 160 (163)
++++++.
T Consensus 388 ~~l~~~~ 394 (397)
T 2zyj_A 388 RALKGLL 394 (397)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-21 Score=146.10 Aligned_cols=148 Identities=14% Similarity=0.181 Sum_probs=125.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc----ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh-c-
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR----FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ-L- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~----~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~- 75 (163)
||+||+|+||++++++++++.+..... +++++.+.|.++..++++. ++++++.++.++++++.+.+.|++ +
T Consensus 235 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~ 311 (390)
T 1d2f_A 235 FNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG---APWLDALRIYLKDNLTYIADKMNAAFP 311 (390)
T ss_dssp HTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 578999999999944889888877654 2478899998888888754 567889999999999999999998 5
Q ss_pred CCccccCCceeEEEeecCCc-ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGL-ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
|+++.+|++++++|++++.. . ++.++++.|++++||.+.||..|+...++++||+++. +++++++++++|.+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~ 384 (390)
T 1d2f_A 312 ELNWQIPQSTYLAWLDLRPLNI------DDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLIN 384 (390)
T ss_dssp SCCCCCCSBCSEEEEECGGGCC------CHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHH
T ss_pred CCEEecCCccEEEEEEccccCC------CHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 89999999999999999853 2 5678999888558999999998874447899999998 78999999999999
Q ss_pred HHHHh
Q 042816 155 ISQTC 159 (163)
Q Consensus 155 ~~~~~ 159 (163)
+++++
T Consensus 385 ~l~~~ 389 (390)
T 1d2f_A 385 AIRAV 389 (390)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98765
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-21 Score=150.51 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=126.4
Q ss_pred C-CCCceeEEEEEec--CHHHHHHHHHhhc-ccCCChHHHHHHHHhcCChH--------HHHHHHHHHHHHHHHHHHHHH
Q 042816 2 L-SLPGFRISVIYSY--NNSVLAAAKKLAR-FSSVSAPSQNLLVSMLSDTK--------FVQKFININRERLRRLYVKFV 69 (163)
Q Consensus 2 ~-~~~G~RiG~~i~~--~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~l~ 69 (163)
| |+||+|+||+++. ++++++.+.+... .++++.+.|.++..++++++ + .+++++.++.++++++++.
T Consensus 319 ~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~l~ 397 (500)
T 3tcm_A 319 YYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASY-KAEKDGILASLARRAKALE 397 (500)
T ss_dssp TTCCGGGCCEEEEEESCCTTHHHHHHHHHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccceEEEEEeCCCHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccccchhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 5 8899999999973 6789898887766 47889999999999997532 3 5777889999999999999
Q ss_pred HHhhhc-CCccccCCceeEEEeec--CCcc----cCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-CCCceEEEEEecCC
Q 042816 70 AGLRQL-GIECAKSNGGFYCWADM--SGLI----SSYSEKGELELWDKLLNVAKVNVTPGSSCHC-IEPGWFSFSFTLLT 141 (163)
Q Consensus 70 ~~l~~~-g~~~~~~~~g~~~~~~~--~~~~----~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~iRi~~~~~~ 141 (163)
+.|+++ |+++.+|++|+|+|+++ |... ...+..++..++..+++++||.+.||+.|+. .+++++|++++ ++
T Consensus 398 ~~L~~~~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~-~~ 476 (500)
T 3tcm_A 398 HAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL-PQ 476 (500)
T ss_dssp HHHHTSTTEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC-SC
T ss_pred HHHhcCCCcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC-CC
Confidence 999999 99999999999999655 3211 0001113455566777778999999999985 45789999999 49
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 042816 142 EKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 142 ~~~l~~~~~~l~~~~~~~~ 160 (163)
.+++++++++|.++++++.
T Consensus 477 ~e~i~~~i~~l~~~~~~~~ 495 (500)
T 3tcm_A 477 EDKIPAVISRFTVFHEAFM 495 (500)
T ss_dssp TTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987764
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-21 Score=145.59 Aligned_cols=142 Identities=16% Similarity=0.267 Sum_probs=123.5
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
||+||+|+||+++ ++++++.+...... .+++.+.|.++..+|++. ++++++.++.++++++.+.+.|+++ +++
T Consensus 232 ~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-~~~ 306 (376)
T 2dou_A 232 YNLAGFRLGFALG-SEEALARLERVKGVIDFNQYAGVLRMGVEALKTP---KEVVRGYARVYRERALGMAEALKGV-LSL 306 (376)
T ss_dssp HTCGGGCCEEEEE-CHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHHHTTT-SEE
T ss_pred cCChhheeEEEec-CHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHh-cCc
Confidence 5789999999999 99999999877663 468899999999999885 5778999999999999999999988 888
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
.+|++|+|+|++++... ++.++++.|++ +||.+.||+.|+...++++||+++. +++++++++++|.+++
T Consensus 307 ~~~~~~~~~~~~~~~~~------~~~~~~~~l~~-~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 307 LPPRATMYLWGRLPEGV------DDLEFGLRLVE-RGVALAPGRGFGPGGKGFVRIALVR-PLEELLEAAKRIREAL 375 (376)
T ss_dssp CCCCBSSEEEEECCTTC------CHHHHHHHHHH-TTEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred cCCCeeEEEEEECCCCC------CHHHHHHHHHH-CCEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence 88899999999998543 56789999987 6999999998875457899999997 8899999999998754
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=150.53 Aligned_cols=153 Identities=16% Similarity=0.245 Sum_probs=125.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSD-----TKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
||+||+|+||+++ ++++++.+..... .++++++.|.++..+|++ ..+ ++++++.++.++++++++.+.|++
T Consensus 257 ~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 334 (429)
T 1yiz_A 257 FSLTGWKIGWAYG-PEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSP-ECYFNSISGELMAKRDYMASFLAE 334 (429)
T ss_dssp HTCGGGCCEEEES-CHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcceEEEEe-CHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccch-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999 8999999887654 367899999999888876 432 467889999999999999999998
Q ss_pred cCCccccCCceeEEEeecCCccc------CCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-----CCceEEEEEecCChh
Q 042816 75 LGIECAKSNGGFYCWADMSGLIS------SYSEKGELELWDKLLNVAKVNVTPGSSCHCI-----EPGWFSFSFTLLTEK 143 (163)
Q Consensus 75 ~g~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-----~~~~iRi~~~~~~~~ 143 (163)
+|+.+..|++|+|+|++++.... ..+..++.++++.|++++||.+.||+.|+.. +++++||+++. +++
T Consensus 335 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~-~~e 413 (429)
T 1yiz_A 335 VGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK-KDE 413 (429)
T ss_dssp HTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCS-CHH
T ss_pred CCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecC-CHH
Confidence 89998889999999999985310 0000256789988886689999999888632 26899999997 999
Q ss_pred HHHHHHHHHHHHHH
Q 042816 144 DIHVVMERIRRISQ 157 (163)
Q Consensus 144 ~l~~~~~~l~~~~~ 157 (163)
++++++++|.++++
T Consensus 414 ~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 414 NLQKAAEILRKWKG 427 (429)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998764
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=148.61 Aligned_cols=151 Identities=19% Similarity=0.316 Sum_probs=127.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc---
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL--- 75 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--- 75 (163)
.|| ||+|+||+++ ++++++.+...... +++|++.|.++..+|++..+ ++++++.++.++++++.+.+.|++.
T Consensus 261 ~~~-~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 337 (425)
T 1vp4_A 261 VLA-PGLRIGMVAG-SKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIELYRRKRTVMLNALEEYFSD 337 (425)
T ss_dssp TTC-GGGCEEEEEC-CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccc-cccceEEEee-CHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 378 9999999999 89999998876653 57899999999999986543 6788999999999999999999886
Q ss_pred --CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC--CCceEEEEEecCChhHHHHHHHH
Q 042816 76 --GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI--EPGWFSFSFTLLTEKDIHVVMER 151 (163)
Q Consensus 76 --g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~--~~~~iRi~~~~~~~~~l~~~~~~ 151 (163)
|+++..|.+|+|+|++++... ++.++++.|++ +||.+.||+.|+.. .++++||+++..+++++++++++
T Consensus 338 ~~g~~~~~~~~g~~~~~~~~~~~------~~~~l~~~l~~-~gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~ 410 (425)
T 1vp4_A 338 IPGVKWVKSEGGLFIWLTLPEGF------DTWEMFEYAKR-KKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKR 410 (425)
T ss_dssp STTCEECCCSBSSEEEEECCTTC------CTTTTHHHHHH-HTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHH
T ss_pred CCceEEecCCccEEEEEEcCCCC------CHHHHHHHHHH-CCCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHH
Confidence 688888899999999998533 45778888887 59999999988642 36899999987568999999999
Q ss_pred HHHHHHHhhh
Q 042816 152 IRRISQTCKS 161 (163)
Q Consensus 152 l~~~~~~~~~ 161 (163)
|.++++++..
T Consensus 411 l~~~l~~~~~ 420 (425)
T 1vp4_A 411 LREVVLEYGK 420 (425)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999877653
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.6e-21 Score=144.76 Aligned_cols=142 Identities=18% Similarity=0.298 Sum_probs=123.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ ++++++.+...... ++++.+.|.++..++++. +++++.++.++++++.+.+.|++. +.
T Consensus 246 ~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~-~~ 319 (396)
T 3jtx_A 246 RSNVPGLRSGFVAG-DAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDE----QHVIDNRRLYQEKFERVIPILQQV-FD 319 (396)
T ss_dssp TSSCGGGCCEEEEE-CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHTTT-SC
T ss_pred ccCCcccceEEEEe-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 37999999999999 99999999887663 678999999999999864 668899999999999999999887 56
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC------CCCceEEEEEecCChhHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------IEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
+..|++|+|+|++++.. ++.++++.|++++||.+.||+.|+. ..++++||+++. +++++++++++|
T Consensus 320 ~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l 391 (396)
T 3jtx_A 320 VKLPDASFYIWLKVPDG-------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA-DVATCVKAAEDI 391 (396)
T ss_dssp CCCCSSSSEEEEECTTS-------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS-CHHHHHHHHHHH
T ss_pred ccCCCeeEEEEEECCCC-------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC-CHHHHHHHHHHH
Confidence 77889999999999862 6788999898768999999998875 246899999998 999999999999
Q ss_pred HHHH
Q 042816 153 RRIS 156 (163)
Q Consensus 153 ~~~~ 156 (163)
.+++
T Consensus 392 ~~~l 395 (396)
T 3jtx_A 392 VSLY 395 (396)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8764
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=143.75 Aligned_cols=149 Identities=21% Similarity=0.308 Sum_probs=126.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||++|+|+||+++ ++++++.+.+.... .+++.+.|.++..++.. .+++++.++.++++++.+.+.|+++++.
T Consensus 231 ~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 305 (391)
T 3h14_A 231 YFSMTGWRVGWMVV-PEDQVRVVERIAQNMFICAPHASQVAALAALDC----DAELQANLDVYKANRKLMLERLPKAGFT 305 (391)
T ss_dssp TTCCTTSCCEEEEC-CGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ccCCccceeEEEEe-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCC----hHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 37899999999999 88999998877663 57889999999888883 5778999999999999999999998654
Q ss_pred -cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-CCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 79 -CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-IEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 -~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+.+|++++++|++++... .+..++++.|++++||.+.||+.|+. ..++++||+++. +++++++++++|.+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~~ 379 (391)
T 3h14_A 306 RIAPPDGAFYVYADVSDLT-----DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR-ATADIEEGLDRLEAFM 379 (391)
T ss_dssp CBCCCCBTTEEEEECTTTC-----SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS-CHHHHHHHHHHHHHHH
T ss_pred cccCCCeeEEEEEecCccC-----CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHH
Confidence 468899999999997521 26789999988867999999999986 347899999998 8899999999999998
Q ss_pred HHhh
Q 042816 157 QTCK 160 (163)
Q Consensus 157 ~~~~ 160 (163)
++..
T Consensus 380 ~~~~ 383 (391)
T 3h14_A 380 QARG 383 (391)
T ss_dssp HHC-
T ss_pred HHhc
Confidence 7654
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-21 Score=148.03 Aligned_cols=151 Identities=18% Similarity=0.243 Sum_probs=124.4
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
||+||+|+||+++ ++++++.+..... .++++++.|.++..+|+.. ++++++.++.++++++++.+.|++.|+++
T Consensus 235 ~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 310 (411)
T 2o0r_A 235 FNCTGWKIGWACG-PAELIAGVRAAKQYLSYVGGAPFQPAVALALDTE---DAWVAALRNSLRARRDRLAAGLTEIGFAV 310 (411)
T ss_dssp TTCTTTCEEEEEC-CHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred cCCccceEEEEee-CHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHHcCCEe
Confidence 6899999999999 8999998887765 3677889999888888754 57788999999999999999999889998
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-C----------CCceEEEEEecCChhHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-I----------EPGWFSFSFTLLTEKDIHVV 148 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-~----------~~~~iRi~~~~~~~~~l~~~ 148 (163)
..|++|+|+|++++... + .++.++++.|++++||.+.||..|.. . +++++||+++. ++++++++
T Consensus 311 ~~~~~g~~~~~~~~~~~---~-~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i~~~ 385 (411)
T 2o0r_A 311 HDSYGTYFLCADPRPLG---Y-DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK-RDDTLDEA 385 (411)
T ss_dssp CCCCBSSEEEEECGGGT---C-CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCS-CHHHHHHH
T ss_pred cCCCeeEEEEEecCCCC---C-CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecC-CHHHHHHH
Confidence 88999999999997520 0 15678998888668999999988842 2 36899999987 88999999
Q ss_pred HHHHHHHHHHhhh
Q 042816 149 MERIRRISQTCKS 161 (163)
Q Consensus 149 ~~~l~~~~~~~~~ 161 (163)
+++|.+++++.+.
T Consensus 386 ~~~l~~~~~~~~~ 398 (411)
T 2o0r_A 386 IRRLSVLAERPAT 398 (411)
T ss_dssp HHHHGGGGC----
T ss_pred HHHHHHHHhccCc
Confidence 9999988766544
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-21 Score=146.90 Aligned_cols=149 Identities=13% Similarity=0.155 Sum_probs=127.8
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--C
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL--G 76 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g 76 (163)
.||++|+|+||+++.++++++.+...... .+++++.|.++..++++. ++++++.++.++++++++.+.|++. |
T Consensus 224 ~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 300 (377)
T 3fdb_A 224 AWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYG---TDFLNQEVAYLKNNHDFLLHEIPKRIPG 300 (377)
T ss_dssp TTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred hccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 37899999999887678999999887653 678999999988888865 5778999999999999999999995 8
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+++..|++++++|++++... .+.++++.|++++||.+.||+.|+...++++||+++. +++++++++++|.+++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~-~~e~i~~~l~~l~~~l 373 (377)
T 3fdb_A 301 AKITPMQATYLMWIDFRDTT------IEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT-SREVLEEAIDRMAKAV 373 (377)
T ss_dssp CEECCCSBCSEEEEECTTSC------CCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHH
T ss_pred ceEecCCeeEEEEEECcccC------CCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC-CHHHHHHHHHHHHHHH
Confidence 99999999999999998631 1256778888867999999999986667999999997 9999999999999988
Q ss_pred HHh
Q 042816 157 QTC 159 (163)
Q Consensus 157 ~~~ 159 (163)
+++
T Consensus 374 ~~~ 376 (377)
T 3fdb_A 374 SHH 376 (377)
T ss_dssp TTC
T ss_pred hhc
Confidence 653
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-21 Score=147.89 Aligned_cols=154 Identities=12% Similarity=0.217 Sum_probs=126.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSD-----TKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
||+||+|+||+++ ++++++.+..... .++++++.|.++..++++ ..+ ++++++.++.++++++.+.+.|++
T Consensus 249 ~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 326 (422)
T 3fvs_A 249 FSATGWKVGWVLG-PDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP-SSYFVQFPQAMQRCRDHMIRSLQS 326 (422)
T ss_dssp HTCGGGCCEEEEC-CHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCT-TCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCccceEEEEEe-CHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccch-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999 9999999887765 467899999999988864 112 567889999999999999999999
Q ss_pred cCCccccCCceeEEEeecCCccc-CC------ChhhHHHHHHHHHHhcCeEEcCCCCCCC-----CCCceEEEEEecCCh
Q 042816 75 LGIECAKSNGGFYCWADMSGLIS-SY------SEKGELELWDKLLNVAKVNVTPGSSCHC-----IEPGWFSFSFTLLTE 142 (163)
Q Consensus 75 ~g~~~~~~~~g~~~~~~~~~~~~-~~------~~~~~~~~~~~l~~~~gi~v~pg~~f~~-----~~~~~iRi~~~~~~~ 142 (163)
+|+.+..|++|+|+|++++.... .. ....+.+++..+++++||.+.||+.|+. .+++++|||++. ++
T Consensus 327 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~-~~ 405 (422)
T 3fvs_A 327 VGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DE 405 (422)
T ss_dssp TTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC-CH
T ss_pred cCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC-CH
Confidence 99998999999999999875210 00 0001568888888878999999998863 347899999998 99
Q ss_pred hHHHHHHHHHHHHHHH
Q 042816 143 KDIHVVMERIRRISQT 158 (163)
Q Consensus 143 ~~l~~~~~~l~~~~~~ 158 (163)
+++++++++|.+++++
T Consensus 406 e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 406 ATLQAMDEKLRKWKVE 421 (422)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.4e-21 Score=144.41 Aligned_cols=150 Identities=11% Similarity=0.152 Sum_probs=129.5
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc---ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh-c-C
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR---FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ-L-G 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g 76 (163)
||++|+|+||++++++++++.+..... .++++++.|.++..++.+. ++++++.++.++++++++.+.|++ + |
T Consensus 236 ~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 312 (391)
T 3dzz_A 236 FNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG---HDWLRELKQVLRDNFAYAREFLAKEVPE 312 (391)
T ss_dssp HTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 578999999999944999999887754 3578999999888888764 577899999999999999999999 4 8
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+++..|.+++++|++++... .+..++++.|++++||.+.||+.|+..+++++||+++. +++++++++++|.+++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l 386 (391)
T 3dzz_A 313 VKVLDSNASYLAWVDISALG-----MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLAC-PKELVIDGMQRLKQGV 386 (391)
T ss_dssp SEECCCCBSSEEEEECGGGC-----SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCS-CHHHHHHHHHHHHHHH
T ss_pred cEEeccCceEEEEEehhhcC-----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHH
Confidence 99999999999999998521 16789999997558999999999987667999999996 9999999999999999
Q ss_pred HHhh
Q 042816 157 QTCK 160 (163)
Q Consensus 157 ~~~~ 160 (163)
++++
T Consensus 387 ~~~~ 390 (391)
T 3dzz_A 387 LNLN 390 (391)
T ss_dssp HTCC
T ss_pred HHhh
Confidence 8764
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.8e-21 Score=146.94 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=128.2
Q ss_pred CCCCCceeEEEEEecC------HHHHHHHHHhhc-ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042816 1 DLSLPGFRISVIYSYN------NSVLAAAKKLAR-FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLR 73 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~------~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 73 (163)
.|++||+|+||+++++ +++++.+..... .++++++.|.++..+|++.. .+++++.++.++++++.+.+.|+
T Consensus 264 ~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~L~~~~--~~~~~~~~~~~~~~~~~l~~~L~ 341 (427)
T 3dyd_A 264 RWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTP--GEFYHNTLSFLKSNADLCYGALA 341 (427)
T ss_dssp TSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3799999999999943 578888877654 47899999999999998422 46778899999999999999999
Q ss_pred hc-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 74 QL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 74 ~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
++ |+++..|++|+|+|++++...- +...++.++++.|++++||.+.||..|+. ++++||+++. +++++++++++|
T Consensus 342 ~~~g~~~~~p~~g~~~~~~l~~~~~-~~~~~~~~~~~~l~~~~gV~v~~g~~~~~--~~~iRis~~~-~~e~i~~~l~~l 417 (427)
T 3dyd_A 342 AIPGLRPVRPSGAMYLMVGIEMEHF-PEFENDVEFTERLVAEQSVHCLPATCFEY--PNFIRVVITV-PEVMMLEACSRI 417 (427)
T ss_dssp HSTTEEEECCSBTTEEEEEECGGGC-TTCSSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEESCS-CHHHHHHHHHHH
T ss_pred cCCCceecCCCeeEEEEEecCHhhc-CCCCCHHHHHHHHHHHCCEEEECCcccCC--CCeEEEEECC-CHHHHHHHHHHH
Confidence 98 8998889999999998873200 00125788999888669999999998875 6899999986 999999999999
Q ss_pred HHHHHHhhh
Q 042816 153 RRISQTCKS 161 (163)
Q Consensus 153 ~~~~~~~~~ 161 (163)
.++++++++
T Consensus 418 ~~~l~~~~~ 426 (427)
T 3dyd_A 418 QEFCEQHYH 426 (427)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhhc
Confidence 999988753
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-20 Score=142.45 Aligned_cols=144 Identities=12% Similarity=0.160 Sum_probs=121.3
Q ss_pred CCCCCceeEEEEEe--cCHHHHHHHHHhhcc------cCCChHHHHHHHHhcCChHHH---HHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYS--YNNSVLAAAKKLARF------SSVSAPSQNLLVSMLSDTKFV---QKFININRERLRRLYVKFV 69 (163)
Q Consensus 1 ~~~~~G~RiG~~i~--~~~~~~~~~~~~~~~------~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~l~ 69 (163)
+||+||+|+||+++ .++++++.+...... .+++.+.|.++..++++..+. .++++++++.++++++++.
T Consensus 263 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 342 (418)
T 3rq1_A 263 GFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFK 342 (418)
T ss_dssp TTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999988 378999988776542 358899999999999987421 4556678899999999999
Q ss_pred HHhhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHH
Q 042816 70 AGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVM 149 (163)
Q Consensus 70 ~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~ 149 (163)
+.|+++|+++.+|++|||+|++++ ++.++++.|. ++||.+.|| ++++|||++.++++++++++
T Consensus 343 ~~L~~~g~~~~~~~~~~~~~~~~~---------~~~~~~~~l~-~~gi~v~~g-------~~~iRis~~~~~~~~i~~~~ 405 (418)
T 3rq1_A 343 QEAAQVGLPMLPYRGGFFITIPTD---------SANAICEELK-KEHIYVIAL-------ANGIRIAACGIPKCQMTGLA 405 (418)
T ss_dssp HHHHHHTCCCCCCCSSSEEEEECT---------THHHHHHHHH-HTTEECEEC-------SSEEEEEGGGSCHHHHTTHH
T ss_pred HHHHhcCCCCCCCCceEEEEcCCC---------CHHHHHHHHH-hCCEEEecC-------CCCeEEEEecCCHHHHHHHH
Confidence 999998999999999999999875 5678888765 489999997 36899999866999999999
Q ss_pred HHHHHHHHHhhh
Q 042816 150 ERIRRISQTCKS 161 (163)
Q Consensus 150 ~~l~~~~~~~~~ 161 (163)
++|.++++++.+
T Consensus 406 ~~l~~~l~~~~~ 417 (418)
T 3rq1_A 406 EKIYNAMKSLGK 417 (418)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 999999987753
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-21 Score=144.95 Aligned_cols=144 Identities=19% Similarity=0.253 Sum_probs=122.0
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
||+||+|+||+++ ++++++.+..... .++++.+.|.++..+|++. ++++++.++.++++++++.+.|+++|+++
T Consensus 238 ~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 313 (386)
T 1u08_A 238 YHMTGWKVGYCVA-PAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYLALPDFYRQKRDILVNALNESRLEI 313 (386)
T ss_dssp TTCGGGCCEEEEC-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHHTHHHHHHHHHHHHHHHTTSSSCEE
T ss_pred cCCcccceEEEEc-CHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence 6889999999999 8999999887765 3678899999999888764 46788999999999999999999889998
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--CCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC--IEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~--~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
..|++|+|+|++++... ..++.++++.|++++||.+.||..|.. ..++++||+++. +++++++++++|.+
T Consensus 314 ~~~~~g~~~~~~~~~~~----~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 314 LPCEGTYFLLVDYSAVS----TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQ 385 (386)
T ss_dssp CCCCBSSEEEEECTTTC----CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHTT
T ss_pred cCCCceEEEEEecCCCC----CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcC-CHHHHHHHHHHHhh
Confidence 88999999999998530 015688998888668999999988864 247899999997 88999999998864
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=143.73 Aligned_cols=144 Identities=17% Similarity=0.203 Sum_probs=123.5
Q ss_pred CCCCceeEEEEEe--cCHHHHHHHHHhhcc------cCCChHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042816 2 LSLPGFRISVIYS--YNNSVLAAAKKLARF------SSVSAPSQNLLVSMLS-DTKFVQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 2 ~~~~G~RiG~~i~--~~~~~~~~~~~~~~~------~~~s~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
||+||+|+||+++ +++++++.+...... +++|.+.|.++..+|+ ++.+ .+++++.++.++++++.+.+.|
T Consensus 273 ~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L 351 (430)
T 2x5f_A 273 FFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQF-DKEIEQNIQTLKERYEVTKEVV 351 (430)
T ss_dssp TTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999998 468888888776543 5789999999999999 8755 5667779999999999999999
Q ss_pred h----hcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHH
Q 042816 73 R----QLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVV 148 (163)
Q Consensus 73 ~----~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~ 148 (163)
+ +.|+++.+|++|+|+|++++ .. ++.++++.|++++||.+.|| .++++||+++..++++++++
T Consensus 352 ~~~~~~~g~~~~~~~~g~~~~~~~~-~~------~~~~~~~~l~~~~gi~v~~g------~~~~iRis~~~~~~e~i~~~ 418 (430)
T 2x5f_A 352 YADQYHSHWQAYDFNSGYFMAIKVH-DV------DPEALRKHLIDKYSIGVIAL------NATDIRIAFSCVEKDDIPHV 418 (430)
T ss_dssp TCGGGTTTEEECCCCBSSEEEEEES-SS------CHHHHHHHHHHHHCEECEEC------SSSEEEEEGGGSCGGGHHHH
T ss_pred HhhCCCCCceeeCCCceEEEEeCCC-CC------CHHHHHHHHHHhCCEEEecC------CCCeEEEEEecCCHHHHHHH
Confidence 8 56888889999999999998 32 67889998886589999998 36899999994488999999
Q ss_pred HHHHHHHHHHh
Q 042816 149 MERIRRISQTC 159 (163)
Q Consensus 149 ~~~l~~~~~~~ 159 (163)
+++|.++++++
T Consensus 419 ~~~l~~~l~~~ 429 (430)
T 2x5f_A 419 FDSIAKAIDDL 429 (430)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998775
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=142.98 Aligned_cols=147 Identities=19% Similarity=0.370 Sum_probs=125.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
.||+||+|+||+++ ++++++.+...... ++++.+.|.++..+|+.. ++++++.++.++++++++.+.|+++ |+
T Consensus 238 ~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~ 313 (388)
T 1j32_A 238 TYAMTGWRVGFLAG-PVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS---QDCVQEMLAAFAERRRYMLDALNAMPGL 313 (388)
T ss_dssp TTTCTTTCCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred ccCCcccceEEEEe-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 37899999999999 89999988876653 678899999888888754 4678889999999999999999998 89
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
++..|.+|+++|++++.. + .++.++++.|++++||.+.||..|+. ++++||+++. +++++++++++|.++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~~-~~~~i~~~~~~l~~~l~ 385 (388)
T 1j32_A 314 ECPKPDGAFYMFPSIAKT----G-RSSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYAT-DLDTIKRGMERLEKFLH 385 (388)
T ss_dssp BCCCCCBTTEECCBCGGG----T-CCHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECCS-CHHHHHHHHHHHHHHHH
T ss_pred cccCCCeeEEEEEecCCC----C-CCHHHHHHHHHHhCCEEEeChhhhCC--CCcEEEEecC-CHHHHHHHHHHHHHHHH
Confidence 999999999999988741 0 15788999888657999999998875 6899999986 99999999999999887
Q ss_pred Hh
Q 042816 158 TC 159 (163)
Q Consensus 158 ~~ 159 (163)
++
T Consensus 386 ~~ 387 (388)
T 1j32_A 386 GI 387 (388)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-22 Score=151.11 Aligned_cols=149 Identities=21% Similarity=0.215 Sum_probs=115.5
Q ss_pred CCCCCceeEEEEEecCHHH-------HHHHHHhhc---ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYNNSV-------LAAAKKLAR---FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVA 70 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~-------~~~~~~~~~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (163)
.||+||+|+||+++ ++++ ++.+..... +.++|.+.|.++..+|++. ++++.++.++++++++.+
T Consensus 237 ~~g~~GlriG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~l~~ 310 (400)
T 3asa_A 237 PLGFAGIRLGWTVI-PQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL-----PQLEAIHYYRENSDLLRK 310 (400)
T ss_dssp GGTTTTCCCEEEEC-CTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHH
T ss_pred hcCCcchheeEEee-ChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHH
Confidence 37899999999999 7777 565543222 2468999999998888653 467888999999999999
Q ss_pred HhhhcCCccccCCceeEEEee-cCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHH
Q 042816 71 GLRQLGIECAKSNGGFYCWAD-MSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVM 149 (163)
Q Consensus 71 ~l~~~g~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~ 149 (163)
.|++.|+++.+|.+|+|+|++ ++... ++.++++.|++++||.+.||+.|+..+++++||++.. +++++++++
T Consensus 311 ~L~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~i~~~l 383 (400)
T 3asa_A 311 ALLATGFEVFGGEHAPYLWVKPTQANI------SDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLG-KREDILAAC 383 (400)
T ss_dssp HHHHTTCEEEECSSSSEEEEECCCTTC------CTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCS-CHHHHHHHH
T ss_pred HHHHCCCeeeCCCCceEEEEeccCCCC------CHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeC-CHHHHHHHH
Confidence 999889988888899999999 87533 4567888888767999999999875457899999755 889999999
Q ss_pred HHHHHHHHHhhhc
Q 042816 150 ERIRRISQTCKSH 162 (163)
Q Consensus 150 ~~l~~~~~~~~~~ 162 (163)
++|.++++++.||
T Consensus 384 ~~l~~~~~~~~~~ 396 (400)
T 3asa_A 384 ERLQMAPALQSHH 396 (400)
T ss_dssp HHHHC--------
T ss_pred HHHHHHHHhhhhc
Confidence 9999999877664
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=142.92 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=124.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc---cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh-c-C
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF---SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ-L-G 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g 76 (163)
||+||+|+||++++++++++.+...... .+++.+.|.++..++.+. ++++++.++.++++++.+.+.|++ + |
T Consensus 240 ~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 316 (391)
T 4dq6_A 240 FNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG---ESWLESFLEYLESNIDFAIKYINENMPK 316 (391)
T ss_dssp HTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 5789999999999446899988877542 478889999888888764 577899999999999999999998 4 8
Q ss_pred CccccCCceeEEEeecCC-cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSG-LISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
+++.+|++++++|++++. .. +..++++.|++++||.+.||+.|+..+++++||+++. +++++++++++|.++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~ 389 (391)
T 4dq6_A 317 LKVRKPEGTYLLWVDFSALGL------SDEELESILVQKGKVALNQGNSFGIGGSGYQRINLAC-PRSMLEEALIRIKNA 389 (391)
T ss_dssp SEECCCSBSSEEEEECGGGCC------CHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCS-CHHHHHHHHHHHHHH
T ss_pred CEecCCCccEEEEEEhhhcCC------CHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcC-CHHHHHHHHHHHHHH
Confidence 999999999999999985 22 6789999998845999999999987667999999996 999999999999987
Q ss_pred H
Q 042816 156 S 156 (163)
Q Consensus 156 ~ 156 (163)
+
T Consensus 390 l 390 (391)
T 4dq6_A 390 I 390 (391)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=142.42 Aligned_cols=148 Identities=14% Similarity=0.186 Sum_probs=128.8
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
.||+||+|+||+++ ++++++.+...... .+++.+.|.++...+++. ++++++.++.++++++.+.+.|+++ ++
T Consensus 223 ~~~~~G~r~G~v~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 298 (375)
T 3op7_A 223 TYSLPGIRIGWVAA-NHQVTDILRDYRDYTMICAGVFDDLVAQLALAHY---QEILERNRHILEENLAILDQWIEEEPLV 298 (375)
T ss_dssp SSSCGGGCCEEEEC-CHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred hcCCcccceEEEEe-CHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 37889999999999 99999999887764 467889999888888764 6788999999999999999999997 88
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
.+..|.+|+++|+.++... +..++++.|++++||.+.||..|+. ++++||+++. +.+++++++++|.++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~ll~~~gi~v~~g~~~~~--~~~iRi~~~~-~~~~i~~~l~~l~~~l~ 369 (375)
T 3op7_A 299 SYIRPAVVSTSFVKIAVDM------PMEDFCLQLLQEHGVLLVPGNRFER--DGYVRLGFAC-EQETLIKGLEKLSQFLR 369 (375)
T ss_dssp EECCCSSSSCEEEEECCSS------CHHHHHHHHHHHHCEECEEGGGGTC--TTEEEECCCS-CHHHHHHHHHHHHHHHG
T ss_pred eEecCCCeEEEeEEcCCCC------CHHHHHHHHHHhCCEEEeChhhhCC--CCeEEEEecC-CHHHHHHHHHHHHHHHH
Confidence 8889999999999987643 6788999887669999999998875 7899999997 77999999999999998
Q ss_pred Hhhh
Q 042816 158 TCKS 161 (163)
Q Consensus 158 ~~~~ 161 (163)
++.+
T Consensus 370 ~~~~ 373 (375)
T 3op7_A 370 RFDK 373 (375)
T ss_dssp GGC-
T ss_pred HHhh
Confidence 7754
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-20 Score=141.21 Aligned_cols=150 Identities=15% Similarity=0.185 Sum_probs=127.5
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHH-HHHHHHHHHHHHHHHHHHHHhhhc--
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQ-KFININRERLRRLYVKFVAGLRQL-- 75 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~-- 75 (163)
.|| ||+|+||+++ ++++++.+...... ++++++.|.++..++++..+ + +++++.++.++++++++.+.|++.
T Consensus 248 ~~~-~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 324 (407)
T 2zc0_A 248 VLG-TGFRIGWIIA-EGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYF-EKYHLEGALLGYKEKRDIMLKALENHLP 324 (407)
T ss_dssp TTC-TTSCCEEEEC-CHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHH-HHHTTTTHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccC-CCcceEEEec-CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 367 9999999999 89999999887664 46789999999999987644 5 778899999999999999999885
Q ss_pred CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC--CCceEEEEEecCChhHHHHHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI--EPGWFSFSFTLLTEKDIHVVMERIR 153 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~--~~~~iRi~~~~~~~~~l~~~~~~l~ 153 (163)
++++..|.+|+|+|++++... +..++++.|.+++||.+.||..|... .++++||+++..+++++++++++|.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~ 398 (407)
T 2zc0_A 325 NAEFTKPIAGMFVMFFLPEGA------DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLA 398 (407)
T ss_dssp TSCBCCCSBSSEEEEECSTTC------CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHH
T ss_pred CCEEecCCCcEEEEEEcCCCC------CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHH
Confidence 688878899999999998643 67889999988459999999988643 3689999998656899999999999
Q ss_pred HHHHHh
Q 042816 154 RISQTC 159 (163)
Q Consensus 154 ~~~~~~ 159 (163)
++++++
T Consensus 399 ~~l~~~ 404 (407)
T 2zc0_A 399 KLYKEK 404 (407)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998765
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=148.78 Aligned_cols=154 Identities=13% Similarity=0.237 Sum_probs=114.9
Q ss_pred CCCCCceeEEEEEecCHH-HHHHHHHhh-------------------------------------c-ccCCChHHHHHH-
Q 042816 1 DLSLPGFRISVIYSYNNS-VLAAAKKLA-------------------------------------R-FSSVSAPSQNLL- 40 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~-~~~~~~~~~-------------------------------------~-~~~~s~~~q~~~- 40 (163)
+||+||+|+||+++ +++ +++.+.+.. . ..+++.+.|.++
T Consensus 316 ~~g~~GlRiG~~~~-~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a 394 (546)
T 2zy4_A 316 YFGATGWRLGVVAA-HQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMA 394 (546)
T ss_dssp TTTCGGGCEEEEEE-ESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHH
T ss_pred ccCCCCcceEEEEE-CCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHH
Confidence 47999999999999 554 777763211 1 136788888764
Q ss_pred ----HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCceeEEEeecCCcccC-CC---------hhhHHH
Q 042816 41 ----VSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISS-YS---------EKGELE 106 (163)
Q Consensus 41 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~-~~---------~~~~~~ 106 (163)
..+++++ +.+.+++++.|++|++.+.+.|. .++.+.+|++|||+|++++.+... ++ ..++.+
T Consensus 395 ~~a~~all~~~---~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~ 470 (546)
T 2zy4_A 395 LFSLFALMDEA---DEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGD 470 (546)
T ss_dssp HHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHH
Confidence 3556655 57789999999999999999996 567777899999999998642100 00 002344
Q ss_pred HHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 107 LWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 107 ~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+...+++++||.|.||+.|+. +++++|||++..+++++++++++|.++++++.
T Consensus 471 ~l~~ll~~~gV~v~pG~~F~~-~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 471 MLFRIADETGIVLLPGRGFGS-NRPSGRASLANLNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp HHHHHHHHHSCCCEESSCTTC-SSCEEEEESSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEeCccccCC-CCCeEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence 444555669999999999986 46899999997688899999999999887654
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-20 Score=141.17 Aligned_cols=149 Identities=19% Similarity=0.199 Sum_probs=127.8
Q ss_pred CCCCCceeEEEEEecCH-HHHHHHHHhhccc-CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNN-SVLAAAKKLARFS-SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~-~~~~~~~~~~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ ++ ++++.+......+ +++.+.|.++..+|+.. ..++++.++.++++++++.+.|+++|++
T Consensus 245 ~~g~~G~r~G~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 320 (409)
T 2gb3_A 245 KFSACGARVGCLIT-RNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD---DSFFDFVRETYRERVETVLKKLEEHGLK 320 (409)
T ss_dssp TTTCGGGCCEEEEC-SCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCccceEEEEEE-CcHHHHHHHHHHHhccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHcCce
Confidence 47889999999999 65 8999888776655 88999999999999765 5778899999999999999999988888
Q ss_pred c-ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHh-----cCeEEcCCCCCCC---CCCceEEEEEecCChhHHHHHH
Q 042816 79 C-AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNV-----AKVNVTPGSSCHC---IEPGWFSFSFTLLTEKDIHVVM 149 (163)
Q Consensus 79 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~gi~v~pg~~f~~---~~~~~iRi~~~~~~~~~l~~~~ 149 (163)
+ ..|.+|+++|++++. .+..++++.|+++ +||.+.||..|+. .+++++||+++. +++++++++
T Consensus 321 ~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~-~~e~i~~~~ 392 (409)
T 2gb3_A 321 RFTKPSGAFYITAELPV-------EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVL-EKDLLSRAI 392 (409)
T ss_dssp CBCCCSBSSEEEEECSS-------SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCS-CHHHHHHHH
T ss_pred eeeCCCeeEEEEEEeCC-------CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCC-CHHHHHHHH
Confidence 8 788999999999972 2678899999875 4999999988864 236899999995 999999999
Q ss_pred HHHHHHHHHhhh
Q 042816 150 ERIRRISQTCKS 161 (163)
Q Consensus 150 ~~l~~~~~~~~~ 161 (163)
++|.+++++++.
T Consensus 393 ~~l~~~l~~~~~ 404 (409)
T 2gb3_A 393 DVLMEGLKMFCS 404 (409)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhh
Confidence 999999988754
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-20 Score=140.81 Aligned_cols=148 Identities=13% Similarity=0.124 Sum_probs=123.6
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHHHHHHHHhhh----
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSD--TKFVQKFININRERLRRLYVKFVAGLRQ---- 74 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~---- 74 (163)
++||+|+||+++ ++++++.+...... ++++.+.|.++..++++ +.+ .+++++.++.|+++++.+.+.|.+
T Consensus 255 ~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 332 (423)
T 3ez1_A 255 TFAGAGLGFVAS-SEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGL-EGLMRDHAAIIAPKFRAVDEVLRAELGE 332 (423)
T ss_dssp SCSSSSCEEEEE-CHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCcceEEEEe-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 689999999999 99999999887763 67899999999999987 544 788999999999999998888866
Q ss_pred cC--CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC-CCCCCC---CCCceEEEEEecCChhHHHHH
Q 042816 75 LG--IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP-GSSCHC---IEPGWFSFSFTLLTEKDIHVV 148 (163)
Q Consensus 75 ~g--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p-g~~f~~---~~~~~iRi~~~~~~~~~l~~~ 148 (163)
.| +.+..|++|+|+|++++.. +...+.+.|.+ +||.+.| |..|.. ..++++||+++..++++++++
T Consensus 333 ~~~~~~~~~p~~g~~~~~~~~~~-------~~~~~~~~l~~-~gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~i~~~ 404 (423)
T 3ez1_A 333 GGEYATWTLPKGGYFISLDTAEP-------VADRVVKLAEA-AGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTA 404 (423)
T ss_dssp TTSSEEECCCSBSSCEEEEESSS-------CHHHHHHHHHH-TTEECCCTTTTSSTTCCSSSCEEEECCSSSCHHHHHHH
T ss_pred CCCceEEeCCCccEEEEEECCCC-------cHHHHHHHHHH-CCcEEecCcccccCCCCCCCCeEEEEcCCCCHHHHHHH
Confidence 34 6777899999999999863 45677776654 8999999 777753 247899999986689999999
Q ss_pred HHHHHHHHHHhh
Q 042816 149 MERIRRISQTCK 160 (163)
Q Consensus 149 ~~~l~~~~~~~~ 160 (163)
+++|.+++++..
T Consensus 405 ~~~l~~~l~~~~ 416 (423)
T 3ez1_A 405 MQVVAACIRLAT 416 (423)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-20 Score=140.02 Aligned_cols=140 Identities=12% Similarity=0.110 Sum_probs=121.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ ++++++.+...... ++++.+.|.++..++++. +++++.++.++++++.+.+.|+ ++.
T Consensus 232 ~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~--~~~ 304 (376)
T 3ezs_A 232 RSSAPGLRSGFIAG-DSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDD----RHAEFFRNIYANNLKLARKIFK--NTL 304 (376)
T ss_dssp TTTCGGGCCEEEEE-CHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCS----HHHHHHHHHHHHHHHHHHHHST--TCC
T ss_pred ccCCccceeEEEee-CHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHhc--CCC
Confidence 47899999999999 99999999887763 678999999999999874 5578999999999999999998 555
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC--CCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH--CIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~--~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
.|.+|+|+|++++ +..++++.|++++||.+.||+.|+ ...++++||+++. +++++++++++|.+++
T Consensus 305 --~~~~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l 372 (376)
T 3ezs_A 305 --IYPYSFYVYLPVQ---------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY-DTPLLEKPLEIIETYR 372 (376)
T ss_dssp --CCSBSSEEEEECS---------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS-CHHHHHHHHHHHHHHH
T ss_pred --CCCcceEEEEECC---------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC-CHHHHHHHHHHHHHHH
Confidence 7899999999997 357888888876899999999998 3457899999987 9999999999999988
Q ss_pred HHh
Q 042816 157 QTC 159 (163)
Q Consensus 157 ~~~ 159 (163)
+++
T Consensus 373 ~~~ 375 (376)
T 3ezs_A 373 ENH 375 (376)
T ss_dssp CC-
T ss_pred Hhc
Confidence 654
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=143.93 Aligned_cols=151 Identities=21% Similarity=0.279 Sum_probs=125.9
Q ss_pred CCCCCceeEEEEE--ecCH----HHHHHHHHhhcc-cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042816 1 DLSLPGFRISVIY--SYNN----SVLAAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLR 73 (163)
Q Consensus 1 ~~~~~G~RiG~~i--~~~~----~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 73 (163)
.||+||+|+||++ + ++ ++++.+...... ++++.+.|.++..+|+.. .+++++.++.++++++++.+.|+
T Consensus 246 ~~~~~G~r~G~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~ 321 (406)
T 1xi9_A 246 VYFATGWRLGYMYFVD-PENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP---MDYLKEYMKKLKERRDYIYKRLN 321 (406)
T ss_dssp TTCCGGGCCEEEEEEC-TTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccEEEEEEEec-CchhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999 8 78 999988876654 688999999999999543 24578899999999999999999
Q ss_pred hc-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHH
Q 042816 74 QL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 74 ~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
++ |+++..|++|+++|++++... + .+..++++.|++++||.+.||..|+..+++++||+++. +++++++++++|
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~-~~~~i~~~~~~l 396 (406)
T 1xi9_A 322 EIPGISTTKPQGAFYIFPKIEVGP---W-KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAMDRF 396 (406)
T ss_dssp TSTTEECCCCCBSSEECCEECSCS---C-SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHH
T ss_pred hCCCCeeecCCeeEEEEEecCccC---C-CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecC-CHHHHHHHHHHH
Confidence 98 888888999999999987410 0 16788999888558999999998875446899999994 999999999999
Q ss_pred HHHHHHhh
Q 042816 153 RRISQTCK 160 (163)
Q Consensus 153 ~~~~~~~~ 160 (163)
.++++++.
T Consensus 397 ~~~l~~~~ 404 (406)
T 1xi9_A 397 EKFMKERL 404 (406)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99987753
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=144.31 Aligned_cols=135 Identities=14% Similarity=0.257 Sum_probs=108.8
Q ss_pred CCCCCceeEEEEEe--cCHHHHHHHHH----hhc--ccCCChHHHHHHHHhcCChH----HHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYS--YNNSVLAAAKK----LAR--FSSVSAPSQNLLVSMLSDTK----FVQKFININRERLRRLYVKF 68 (163)
Q Consensus 1 ~~~~~G~RiG~~i~--~~~~~~~~~~~----~~~--~~~~s~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~l 68 (163)
+||+||+|+||+++ +++++++.+.. ... .++++.+.|.+++.+|+++. | .++++++++.|+++++.+
T Consensus 250 ~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~-~~~l~~~~~~~~~~R~~l 328 (405)
T 3k7y_A 250 NMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNW-IKELSQLSQRITNNRILF 328 (405)
T ss_dssp TSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred cCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 58999999999864 47777665542 222 24567899999999998863 3 567788899999999999
Q ss_pred HHHhh----hcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecC
Q 042816 69 VAGLR----QLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLL 140 (163)
Q Consensus 69 ~~~l~----~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~ 140 (163)
.+.|+ ++| +++.+|+||||+|++++. ++++.| +++||.+.||. |||++..
T Consensus 329 ~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-----------~~~~~L-~~~gV~v~p~~----------Ris~a~~ 386 (405)
T 3k7y_A 329 FNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-----------KIAEHL-KTHHIYIINNG----------RINVSGI 386 (405)
T ss_dssp HHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-----------GGTTTT-TTTTEECCTTS----------EEEGGGC
T ss_pred HHHHHhhhhhcCCCCCCccccCCceEEEecCCCH-----------HHHHHH-HHCCEeecCCC----------eEEEecc
Confidence 99999 776 688899999999998763 334566 66999999952 9999877
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 042816 141 TEKDIHVVMERIRRISQT 158 (163)
Q Consensus 141 ~~~~l~~~~~~l~~~~~~ 158 (163)
++++++.++++|.+++.+
T Consensus 387 ~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 387 TKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp CTTHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 889999999999998864
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=143.11 Aligned_cols=150 Identities=17% Similarity=0.228 Sum_probs=123.2
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSD-----TKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
||++|+|+||+++ ++++++.+..... .++++++.|.++..++++ ..+ ++++++.++.++++++++.+.|++
T Consensus 242 ~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 319 (410)
T 3e2y_A 242 FSVTGWKLGWSIG-PAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDP-ECYFNSLPKELEVKRDRMVRLLNS 319 (410)
T ss_dssp SSCGGGCCEEEEC-CHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCceEEEEEE-CHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccch-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999 9999999987766 467899999999888863 111 467889999999999999999999
Q ss_pred cCCccccCCceeEEEeecCCcccC-----CChhhHHHHHHHHHHhcCeEEcCCCCCCCC-----CCceEEEEEecCChhH
Q 042816 75 LGIECAKSNGGFYCWADMSGLISS-----YSEKGELELWDKLLNVAKVNVTPGSSCHCI-----EPGWFSFSFTLLTEKD 144 (163)
Q Consensus 75 ~g~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-----~~~~iRi~~~~~~~~~ 144 (163)
+|+.+..|++|+|+|++++..... .+..++.+++..+++++||.+.||+.|+.. +++++|||++. ++++
T Consensus 320 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~-~~e~ 398 (410)
T 3e2y_A 320 VGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK-KDST 398 (410)
T ss_dssp TTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC-CHHH
T ss_pred CCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC-CHHH
Confidence 999999999999999998753210 011135688888887789999999988642 26899999998 9999
Q ss_pred HHHHHHHHHH
Q 042816 145 IHVVMERIRR 154 (163)
Q Consensus 145 l~~~~~~l~~ 154 (163)
+++++++|.+
T Consensus 399 l~~~l~~l~~ 408 (410)
T 3e2y_A 399 LDAAEEIFRA 408 (410)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999875
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=143.24 Aligned_cols=147 Identities=14% Similarity=0.152 Sum_probs=125.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc---ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR---FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
||++|+|+||++++++++++.+..... ..++|++.|.++..+++.. ++++++.++.++++++++.+.|+++ ++
T Consensus 270 ~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~i 346 (421)
T 3l8a_A 270 FNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG---KPWLEELKTVIEGNIKLVIKELEAKTKI 346 (421)
T ss_dssp HTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred ccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 678999999999934999998887764 2478999999988888754 5778999999999999999999997 89
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
++.+|++++++|++++... .+..++.+.|++++||.+.||..|+..+++++||+++. +++++++++++|.++++
T Consensus 347 ~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 347 KVMEPEGTYLVWLDFSAYA-----IAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVAT-PKNTVQEALSRIISVFG 420 (421)
T ss_dssp EEECCSBSSEEEEECGGGT-----CCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHC-
T ss_pred eEeCCCeeEEEEEeccccC-----CCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 9999999999999998521 15678899888767999999999986668999999996 99999999999998764
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=138.02 Aligned_cols=139 Identities=21% Similarity=0.391 Sum_probs=120.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
.||+||+|+||+++ ++++++.+...... ++++.+.|.++..+|+++ +++.++.++++++++.+.|+++|++
T Consensus 247 ~~~~~G~r~G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~l~~~L~~~g~~ 319 (389)
T 1o4s_A 247 SHSMTGWRVGYLIS-SEKVATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERKNFVVERLKKMGVK 319 (389)
T ss_dssp TTTCGGGCCEEEEC-CHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hcCCcccceEEEEe-CHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 37899999999999 89999998877653 678899999999999875 4677888999999999999988888
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
+..|++|+++|++++ . +..++++.|++++||.+.||..|+. ++++||+++. +++++++++++|.++++
T Consensus 320 ~~~~~~~~~~~~~~~--~------~~~~l~~~l~~~~gi~v~~g~~f~~--~~~~Ris~~~-~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 320 FVEPEGAFYLFFKVR--G------DDVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFAT-SIERLTEALDRIEDFLN 387 (389)
T ss_dssp CCCCSBSSEEEEECS--S------CHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCS-CHHHHHHHHHHHHHHHT
T ss_pred eecCCcceEEEEeCC--C------CHHHHHHHHHHHCCEEEeCchhcCC--CCeEEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 888999999999987 2 5688999888558999999998875 5799999997 99999999999998875
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=147.49 Aligned_cols=157 Identities=17% Similarity=0.284 Sum_probs=119.0
Q ss_pred CCCCceeEEEEEecCHHHHHHH------------------------------------HHhhc--ccCCChHHHHH----
Q 042816 2 LSLPGFRISVIYSYNNSVLAAA------------------------------------KKLAR--FSSVSAPSQNL---- 39 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~------------------------------------~~~~~--~~~~s~~~q~~---- 39 (163)
||+||+|+||++++++.+++.+ .+... ..+++.+.|.+
T Consensus 315 ~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~ 394 (533)
T 3f6t_A 315 FGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALF 394 (533)
T ss_dssp HTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHH
T ss_pred CCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHH
Confidence 6899999999999433232222 22222 24678888887
Q ss_pred HHHhcC-C---hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCceeEEEeecCCcccC-CC---------hhhHH
Q 042816 40 LVSMLS-D---TKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISS-YS---------EKGEL 105 (163)
Q Consensus 40 ~~~~l~-~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~-~~---------~~~~~ 105 (163)
+...|. + +.+ +++++++++.|+++++++.+.|. .++.+..|++|+|+|++++..... .+ ..++.
T Consensus 395 a~~~L~~~~g~~~~-~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~ 472 (533)
T 3f6t_A 395 SMTHLLTSTNGGSD-DPYIDIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQV 472 (533)
T ss_dssp HHHHHTTCBGGGTB-CHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHH
T ss_pred HHHHHhhhccccch-HHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHH
Confidence 445564 1 222 68899999999999999999998 888889999999999999752200 00 01456
Q ss_pred HHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhhh
Q 042816 106 ELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 106 ~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
+++..+++++||.+.||+.|+. +++++|||++.++++++++++++|.++++++..
T Consensus 473 ~~~~~ll~~~GV~v~pg~~f~~-~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~~ 527 (533)
T 3f6t_A 473 DFLLKLAEKNGVVLVDGVGFGA-KPGELRVSQANLPTEDYALIGKQVLELLKEYYE 527 (533)
T ss_dssp HHHHHHHHHTTSSSCTTEEECS-STTEEEEESSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEeCCcccCC-CCCEEEEEEeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 7888888778999999999986 368999999877899999999999999887653
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-19 Score=133.78 Aligned_cols=137 Identities=17% Similarity=0.112 Sum_probs=120.5
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||++|+|+||+++ ++++++.+......+++|.+.|.++..++++. +++++.++.++++++++.+.|+++|+++.
T Consensus 228 ~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 302 (365)
T 3get_A 228 LYGLGGLRIGYGIA-NANIISAFYKLRAPFNVSNLALKAAVAAMDDD----EFTEKTLENNFSQMELYKEFAKKHNIKII 302 (365)
T ss_dssp TTSCTTTCCEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HhcCcchheEEEEc-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHhCCCEEC
Confidence 47899999999999 99999999998888889999999999999974 67889999999999999999999998887
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
++.++ |+|++++.. +..++.+.|.+ +||.+.||..|+ ++++||+++ +.++++++++.|.+++
T Consensus 303 ~~~~~-~~~~~~~~~-------~~~~~~~~l~~-~gi~v~~g~~~~---~~~iRis~~--~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 303 DSYTN-FITYFFDEK-------NSTDLSEKLLK-KGIIIRNLKSYG---LNAIRITIG--TSYENEKFFTEFDKIL 364 (365)
T ss_dssp CCSSS-EEEEECSSS-------CHHHHHHHHHT-TTEECEECGGGT---CSEEEEECC--CHHHHHHHHHHHHHHH
T ss_pred CCCCe-EEEEECCCC-------CHHHHHHHHHH-CCEEEEECccCC---CCEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 76665 589999852 56889998876 799999999887 689999998 6789999999998765
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-19 Score=134.61 Aligned_cols=137 Identities=15% Similarity=0.225 Sum_probs=114.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-Ccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG-IEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~ 79 (163)
.||+||+|+||+++ ++++++.+......+++|++.|.++..+|++..+ +++++.++.++++++++.+.|++++ +..
T Consensus 215 ~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 291 (356)
T 1fg7_A 215 AFALAGLRCGFTLA-NEEVINLLMKVIAPYPLSTPVADIAAQALSPQGI--VAMRERVAQIIAEREYLIAALKEIPCVEQ 291 (356)
T ss_dssp TTCCGGGCCEEEEE-CHHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHH--HHHHHHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred hhcCchhhhEEEEe-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCccH--HHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 47899999999999 9999999998887778999999999999987543 3588999999999999999999885 323
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC-CCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP-GSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p-g~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
..|.+|+|+|++++ ++.++++.|.+ +||.+.| |..|+. ++++||+++ +.++++++++.|.+
T Consensus 292 ~~~~~~~~~~~~~~---------~~~~l~~~L~~-~gI~v~~~g~~~~~--~~~iRis~~--~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 292 VFDSETNYILARFK---------ASSAVFKSLWD-QGIILRDQNKQPSL--SGCLRITVG--TREESQRVIDALRA 353 (356)
T ss_dssp ECCCSSSEEEEEET---------THHHHHHHHHH-TTEECEECTTSTTC--TTEEEEECC--CHHHHHHHHHHHHT
T ss_pred ECCCCCeEEEEECC---------CHHHHHHHHHH-CCEEEEECCCCCCC--CCeEEEEeC--CHHHHHHHHHHHHh
Confidence 34567889999987 35788888865 8999999 888874 569999998 56788888888764
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=139.04 Aligned_cols=154 Identities=21% Similarity=0.314 Sum_probs=121.2
Q ss_pred CCCCceeEEEEEecCH-----HHHHHHHHhh-cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLPGFRISVIYSYNN-----SVLAAAKKLA-RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~-----~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
|++||+|+||++++++ .+...+.... ..+++|++.|.++..+|+... +.++++.++.++++++++.+.|+++
T Consensus 255 ~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (416)
T 1bw0_A 255 LVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP--QEHLDQIVAKIEESAMYLYNHIGEC 332 (416)
T ss_dssp TSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6899999999999444 3443333332 246789999999999987532 4677889999999999999999988
Q ss_pred -CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 76 -GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 76 -g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
|+++..|.+|+|+|++++...- .+..++.++++.|++++||.+.||..|+. ++++||+++. +++++++++++|.+
T Consensus 333 ~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~iRis~~~-~~e~l~~~l~~l~~ 408 (416)
T 1bw0_A 333 IGLAPTMPRGAMYLMSRIDLEKY-RDIKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTTTR-PVEVYREAVERIKA 408 (416)
T ss_dssp TTEEECCCCBTTEEEEEECGGGB-SSCCSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCS-CHHHHHHHHHHHHH
T ss_pred CCCcccCCCeeEEEEEeCCHHHc-CCCCCHHHHHHHHHHHCCEEEecccccCC--CCeEEEEecC-CHHHHHHHHHHHHH
Confidence 8888888999999998864100 00015678888887568999999998874 6799999986 88999999999999
Q ss_pred HHHHhhh
Q 042816 155 ISQTCKS 161 (163)
Q Consensus 155 ~~~~~~~ 161 (163)
+++++++
T Consensus 409 ~l~~~~~ 415 (416)
T 1bw0_A 409 FCQRHAA 415 (416)
T ss_dssp HHHHHBC
T ss_pred HHHHhhc
Confidence 9987653
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.5e-22 Score=151.24 Aligned_cols=148 Identities=16% Similarity=0.113 Sum_probs=124.3
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhccc---CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh-c-
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFS---SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ-L- 75 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~- 75 (163)
.||+||+|+||++++++++++.+......+ +++++.|.++..+|++. ++++++.++.++++++.+.+.|++ +
T Consensus 239 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~ 315 (392)
T 3b1d_A 239 TFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG---KPWLVALKAVLEENIQFAVEYFAQEAP 315 (392)
Confidence 378899999999993456999888776643 56889999898888865 577899999999999999999988 5
Q ss_pred CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
++++.+|+++|++|++++... .+..++++.|++++||.+.||..|+..+++++||+++. +++++++++++|.++
T Consensus 316 ~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~e~i~~~l~~l~~~ 389 (392)
T 3b1d_A 316 RLKVMKPQGTYLIWLDFSDYG-----LTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA-PKSLVEEICKRIVCC 389 (392)
Confidence 899999999999999997520 15678888887558999999999975557899999998 789999999999887
Q ss_pred HH
Q 042816 156 SQ 157 (163)
Q Consensus 156 ~~ 157 (163)
++
T Consensus 390 l~ 391 (392)
T 3b1d_A 390 LP 391 (392)
Confidence 64
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-19 Score=138.46 Aligned_cols=150 Identities=14% Similarity=0.235 Sum_probs=125.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHH-HHHHHHHHHHHHHHHhhhc---
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFINI-NRERLRRLYVKFVAGLRQL--- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~--- 75 (163)
+++||+|+||+++ ++++++.+...... ++++++.|.++..++++..+ .++..+ .++.|+++++.+.+.|.+.
T Consensus 277 ~~~~G~r~G~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 354 (444)
T 3if2_A 277 IGLPGMRTGIIVA-DAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRI-KQLSDNEIKPFYQKQATLAVKLLKQALGD 354 (444)
T ss_dssp TTCGGGCCEEEEC-CHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHHHHHHHHHSSS
T ss_pred ccCCCCceEEEEE-CHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCch-hHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3789999999999 99999999887763 67899999999999998776 555555 8889999999999888764
Q ss_pred -CCccccCCceeEEEeecCC-cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCC--------CceEEEEEecCChhHH
Q 042816 76 -GIECAKSNGGFYCWADMSG-LISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE--------PGWFSFSFTLLTEKDI 145 (163)
Q Consensus 76 -g~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~--------~~~iRi~~~~~~~~~l 145 (163)
++.+..|.+|+|+|++++. .+ +..++++.|.+ +||.+.||+.|.... ++++||+++. +++++
T Consensus 355 ~~~~~~~~~~g~~~~~~~~~~~~------~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~-~~e~i 426 (444)
T 3if2_A 355 YPLMIHKPEGAIFLWLWFKDLPI------STLDLYERLKA-KGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA-DEQTL 426 (444)
T ss_dssp SSEEEECCCBSSEEEEEETTCSS------CHHHHHHHHHH-TTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS-CHHHH
T ss_pred CCceEecCCccEEEEEEcCCCCC------CHHHHHHHHHH-CCeEEecchhhcCCCCCcccccCCCeEEEEEeC-CHHHH
Confidence 4677788999999999985 33 67889988865 899999999885421 3799999998 99999
Q ss_pred HHHHHHHHHHHHHhhh
Q 042816 146 HVVMERIRRISQTCKS 161 (163)
Q Consensus 146 ~~~~~~l~~~~~~~~~ 161 (163)
++++++|.++++++..
T Consensus 427 ~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 427 IDGIKVIGEVVRELYD 442 (444)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999987653
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=138.65 Aligned_cols=140 Identities=22% Similarity=0.396 Sum_probs=115.5
Q ss_pred CCCCCceeEEEEEecCHH------HHHHHHHhhc---ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYNNS------VLAAAKKLAR---FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~------~~~~~~~~~~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
.||+||+|+||+++ +++ +.+.+..... ..+++.+.|.++..++++.. .++.++++++++.+.
T Consensus 249 ~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--------~~~~~~~~~~~l~~~ 319 (398)
T 3ele_A 249 SLSLPGERIGYVLV-PDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG--------DINAYKENRDLLYEG 319 (398)
T ss_dssp TSSCTTTCCEEEEC-CTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC--------CHHHHHHHHHHHHHH
T ss_pred cCCCccceeEEEEE-cchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH--------HHHHHHHHHHHHHHH
Confidence 47899999999999 554 4444444333 35678899999999888752 356788889999999
Q ss_pred hhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHH
Q 042816 72 LRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMER 151 (163)
Q Consensus 72 l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~ 151 (163)
|+++|+++..|++|+|+|++++.. ++.++++.|.+ +||.+.||+.|+. ++++||+++. +++++++++++
T Consensus 320 L~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~-~gi~v~~g~~~~~--~~~iRis~~~-~~e~i~~~l~~ 388 (398)
T 3ele_A 320 LTRIGYHCFKPDGAFYMFVKALED-------DSNAFCEKAKE-EDVLIVAADGFGC--PGWVRISYCV-DREMIKHSMPA 388 (398)
T ss_dssp HHHHTCCEECCSBSSEEEEECSSS-------CHHHHHHHHHT-TTEECEESGGGTC--TTEEEEECCS-CHHHHHHHHHH
T ss_pred HHHcCCeecCCCeeEEEEEEcCCC-------CHHHHHHHHHH-CCEEEeCccccCC--CCeEEEEecC-CHHHHHHHHHH
Confidence 998899999999999999999852 57788887765 8999999999975 6899999985 99999999999
Q ss_pred HHHHHHHhh
Q 042816 152 IRRISQTCK 160 (163)
Q Consensus 152 l~~~~~~~~ 160 (163)
|.+++++++
T Consensus 389 l~~~l~~~~ 397 (398)
T 3ele_A 389 FEKIYKKYN 397 (398)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999998875
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=139.24 Aligned_cols=149 Identities=14% Similarity=0.121 Sum_probs=124.4
Q ss_pred CCCCCceeEEEEEecCHHHHH-H-----------------HHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYNNSVLA-A-----------------AKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRER 60 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~-~-----------------~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 60 (163)
.||+||+|+||+++ ++++++ . +.+... .++++.+.|.++..+|++....+.++++.++.
T Consensus 261 ~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 339 (437)
T 3g0t_A 261 AFSYAGQRIGVLMI-SGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIE 339 (437)
T ss_dssp TTSCGGGCCEEEEE-CHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred CCCCccceeEEEEE-CHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHH
Confidence 37899999999999 899988 7 665554 36899999999999998752112227899999
Q ss_pred HHHHHHHHHHHhhhcCCccc-------cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceE
Q 042816 61 LRRLYVKFVAGLRQLGIECA-------KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWF 133 (163)
Q Consensus 61 ~~~~~~~l~~~l~~~g~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~i 133 (163)
++++++.+.+.|+++|+++. ++.+|+|+|++++. . +..++++.|.+ +||.+.||..|+...++++
T Consensus 340 ~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~l~~~L~~-~gi~v~~~~~~~~~~~~~i 411 (437)
T 3g0t_A 340 YGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYKG-M------DSSKLIEKFVR-YGMCAITLKTTGSKRNEAM 411 (437)
T ss_dssp HHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEETT-C------CHHHHHHHHHH-TTEECEESTTTTCCCTTCE
T ss_pred HHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecCC-C------CHHHHHHHHHH-cCeEEeeccccCCCCCCEE
Confidence 99999999999999888887 44899999999983 2 67899999887 7999999999886545899
Q ss_pred EEEEecCChhHHHHHHHHHHHHHHH
Q 042816 134 SFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 134 Ri~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
|||++..+.+++++++++|.+++++
T Consensus 412 Ris~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 412 RICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp EEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHHHHhc
Confidence 9999976889999999999988753
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=137.74 Aligned_cols=146 Identities=23% Similarity=0.407 Sum_probs=119.2
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
||+||+|+||+++ ++++++.+..... .++++++.|.++..+|+...+ ++++++.++.++++++++.+.|++.|+++
T Consensus 224 ~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 301 (381)
T 1v2d_A 224 LEATGYRVGWIVG-PKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAMGLRV 301 (381)
T ss_dssp TTCGGGCCEEEEC-CTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred cCCcccceEEEEe-CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCccc-HHHHHHHHHHHHHHHHHHHHHHHHCCCEe
Confidence 7889999999999 8889888877665 367889999998888875432 46788999999999999999999989999
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC--CCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC--IEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~--~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
..|.+|+|+|++++.. + +.+ +++++||.+.||..|.. ..++++||+++. +.+++++++++|.++++
T Consensus 302 ~~~~~~~~~~~~~~~~-------~---~~~-~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~-~~~~i~~~~~~l~~~l~ 369 (381)
T 1v2d_A 302 YVPEGTYFLMAELPGW-------D---AFR-LVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVVN 369 (381)
T ss_dssp ECCSBSSEEEEECTTC-------C---HHH-HHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHHC-
T ss_pred cCCCcceEEEEecChH-------h---HHH-HHHhCCEEEecchHhCCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHh
Confidence 9999999999999752 2 444 45559999999998874 246899999998 99999999999999987
Q ss_pred Hhhh
Q 042816 158 TCKS 161 (163)
Q Consensus 158 ~~~~ 161 (163)
+.+.
T Consensus 370 ~~r~ 373 (381)
T 1v2d_A 370 SPRE 373 (381)
T ss_dssp ----
T ss_pred hccc
Confidence 7654
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-18 Score=130.70 Aligned_cols=144 Identities=23% Similarity=0.302 Sum_probs=119.0
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||++|+|+||+++ ++++++.+......+++|.+.|.++..+|++. +++++.++.++++++.+.+.|+++|+.+.
T Consensus 215 ~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 289 (360)
T 3hdo_A 215 SYSLAGMRIGLAIA-RPEVIAALDKIRDHYNLDRLAQAACVAALRDQ----AYLSECCRRIRETREWFTTELRSIGYDVI 289 (360)
T ss_dssp TTSCTTSCCEEEEC-CHHHHHHHHHHSCSCCSCHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred hhcCCccceeeEee-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHCCCEEc
Confidence 37899999999999 99999999998888899999999999999874 56788999999999999999999888887
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
++. |.|+|++++.. +..++.+.|.+ +||.+.||..+. .++++||+++ +.++++..++.|+++.+.+.
T Consensus 290 ~~~-~~~~~~~~~~~-------~~~~l~~~l~~-~gi~v~~~~~~~--~~~~iRis~~--~~~e~~~l~~al~~~~~~~~ 356 (360)
T 3hdo_A 290 PSQ-GNYLFATPPDR-------DGKRVYDGLYA-RKVLVRHFSDPL--LAHGMRISIG--TREEMEQTLAALKEIGEGHH 356 (360)
T ss_dssp CCS-SSEEEEECTTC-------CHHHHHHHHHH-TTEECBCCCSTT--TTTSEEEECC--CHHHHHHHHHHHHHHHC---
T ss_pred CCC-ccEEEEECCCC-------CHHHHHHHHHH-CCEEEEECCCCC--CCCEEEEEcC--CHHHHHHHHHHHHHHhcccc
Confidence 655 55678887742 67888988876 899999987632 3689999998 67899999999999887665
Q ss_pred hc
Q 042816 161 SH 162 (163)
Q Consensus 161 ~~ 162 (163)
+|
T Consensus 357 ~~ 358 (360)
T 3hdo_A 357 HH 358 (360)
T ss_dssp --
T ss_pred cc
Confidence 54
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-18 Score=130.24 Aligned_cols=136 Identities=13% Similarity=0.166 Sum_probs=119.0
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
.||++|+|+||+++ ++++++.+......++++.+.|.++..++++. +++++.++.++++++.+.+.|+++ |+++
T Consensus 226 ~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~~g~~~ 300 (363)
T 3ffh_A 226 IYGLASARVGYGIA-DKEIIRQLNIVRPPFNTTSIGQKLAIEAIKDQ----AFIGECRTSNANGIKQYEAFAKRFEKVKL 300 (363)
T ss_dssp TTCCSSCCCEEEEE-CHHHHHHHHHTCCSCCCBHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred hhcCchhceeeeec-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHhhCCCceE
Confidence 37899999999999 99999999998888899999999999999864 667889999999999999999994 9888
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
.++.+ .|+|++++. +..++.+.|.+ +||.+.||..|+. ++++||+++ ++++++.+++.|.++
T Consensus 301 ~~~~~-~~~~~~~~~--------~~~~~~~~l~~-~gi~v~~g~~~~~--~~~iRis~~--~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 301 YPANG-NFVLIDLGI--------EAGTIFSYLEK-NGYITRSGAALGF--PTAVRITIG--KEEDNSAVIALLEKL 362 (363)
T ss_dssp CCCCS-SEEEEECSS--------CHHHHHHHHHH-TTEECEETTTTTC--TTEEEEECC--CHHHHHHHHHHHHHH
T ss_pred CCCCC-eEEEEECCC--------CHHHHHHHHHH-CCeEEEeCccCCC--CCeEEEECC--CHHHHHHHHHHHHHh
Confidence 76655 568999985 56889998886 8999999999975 789999998 778999999988875
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-18 Score=128.42 Aligned_cols=138 Identities=13% Similarity=0.225 Sum_probs=119.4
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||++|+|+||+++ ++++++.+......+++|.+.|.++..+|++. +++++.++.++++++.+.+.|+++|+.+.
T Consensus 214 ~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 288 (354)
T 3ly1_A 214 IHAMAGMRVGYAVA-HPTVIALMGRYVAGEKINFSGVDAALASMNDS----AFITYSKKSNDVSRQILLKALEDLKLPYL 288 (354)
T ss_dssp TTCCGGGCCEEEEC-CHHHHHHHGGGTTCSCCCHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHHHHHHTCCBC
T ss_pred hccChhhhheeeec-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHCCCeEC
Confidence 37899999999999 99999999988888899999999999999975 66789999999999999999999888887
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
++. |.|+|++++. +..++.+.|.+ +||.+. |..++ .++++||+++ ++++++++++.|.+++++
T Consensus 289 ~~~-~~~~~~~~~~--------~~~~~~~~l~~-~gi~v~-g~~~~--~~~~iRis~~--~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 289 PSE-GNFVFHQLVV--------PLKDYQTHMAD-AGVLIG-RAFPP--ADNWCRISLG--TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CCC-SSEEEEECSS--------CHHHHHHHHHH-TTEECC-CCCTT--CTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred CCC-ceEEEEECCC--------CHHHHHHHHHH-CCEEEe-ecCCC--CCCEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 654 5568999985 56888988876 899999 77554 4789999988 678999999999998764
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.6e-19 Score=132.57 Aligned_cols=143 Identities=15% Similarity=0.227 Sum_probs=116.6
Q ss_pred CCCCCceeEEEEE-ecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc
Q 042816 1 DLSLPGFRISVIY-SYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i-~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 78 (163)
.||+||+|+||++ + ++++++.+......+++|.+.|.++..+|++. +++++.++.++++++.+.+.|+++ |++
T Consensus 217 ~~~~~G~r~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 291 (364)
T 1lc5_A 217 FYAIPGLRLGYLVNS-DDAAMARMRRQQMPWSVNALAALAGEVALQDS----AWQQATWHWLREEGARFYQALCQLPLLT 291 (364)
T ss_dssp TTTCTTTCCEEEECC-CHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCH----HHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred hhcCCccceEEEEEC-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 3788999999999 8 99999999888777889999999999999884 578899999999999999999988 888
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
+.++. |.|+|++++. +..++++.|.+ +||.+.||..|...+++++||+++ ..+++++.++.|.+++++
T Consensus 292 ~~~~~-g~~~~~~~~~--------~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 292 VYPGR-ANYLLLRCER--------EDIDLQRRLLT-QRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp ECCCS-SSEEEEEESC--------TTCCHHHHHHT-TTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHC--
T ss_pred ECCCC-CeEEEEECCC--------cHHHHHHHHHH-CCcEEeeCcccCCCCCCEEEEEeC--CHHHHHHHHHHHHHHhhc
Confidence 77654 5567888874 34568888876 799999999987555789999998 567778888888877766
Q ss_pred hh
Q 042816 159 CK 160 (163)
Q Consensus 159 ~~ 160 (163)
++
T Consensus 360 ~~ 361 (364)
T 1lc5_A 360 IA 361 (364)
T ss_dssp --
T ss_pred cc
Confidence 53
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-18 Score=129.06 Aligned_cols=141 Identities=15% Similarity=0.283 Sum_probs=117.0
Q ss_pred CCCCCceeEEEEE-ecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc
Q 042816 1 DLSLPGFRISVIY-SYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i-~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 78 (163)
.||++|+|+||++ . ++++++.+......+++|++.|.++..++++. +++++.++.++++++.+.+.|+++ ++.
T Consensus 216 ~~~~~G~r~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 290 (361)
T 3ftb_A 216 FFAMPGIRFGYGITN-NKEIAAKIKAKQNPWNINCFAEMAAINCLKDT----NYIEESLLWIKKERKRFIEELNKIGFIK 290 (361)
T ss_dssp TTSCGGGCCEEEEES-CHHHHHHHHTTSCTTCSCHHHHHHHHHTSSCH----HHHHHHHHHHHHHHHHHHHHHHHSSSEE
T ss_pred hcCCCCcceeEEEeC-CHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3789999999999 6 99999999988877899999999999999974 678899999999999999999998 788
Q ss_pred -cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 79 -CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 79 -~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
+.++.|+ |+|++++. . +..++++.|.+ +||.+.||+.|+..+++++||+++ ..++++..++.|.++.+
T Consensus 291 ~~~~~~~~-~~~~~~~~-~------~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 291 RVFSPHAN-FVLCRLEN-I------SGEKLYDSLLK-EDIVIRRCCNFIGLDDSFVRFAIK--DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp EEECCSSS-EEEEEESS-S------CHHHHHHHHHT-TTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHH
T ss_pred eecCCCCe-EEEEEcCC-C------CHHHHHHHHHH-CCeEEeeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHh
Confidence 6666655 67888876 2 67899998887 699999999998666899999998 44555555555555443
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-19 Score=134.10 Aligned_cols=142 Identities=16% Similarity=0.232 Sum_probs=114.4
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECA 80 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 80 (163)
||+||+|+||+++ ++++++.+......++++.+.|.++..+|++.. .+.++.++.+ ++++.+.+.|+++ |+++.
T Consensus 199 ~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~ 273 (350)
T 3fkd_A 199 YGIPGLRIGYIVA-NKDFMKRVAAFSTPWAVNALAIEAAKFILIHPA---QFTLPIRKWQ-RNTVDFITALNRLDGVEVH 273 (350)
T ss_dssp HSCGGGCCEEEEC-CHHHHHHHHTTCCTTCSCHHHHHHHHHHHHCTT---TTCCCHHHHH-HHHHHHHHHHHHSTTEEEC
T ss_pred ccCcchheEeEEe-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCHH---HHHHHHHHHH-HHHHHHHHHHhcCCCcEEC
Confidence 6789999999999 999999999988888999999999999998763 2344455555 8889999999998 88887
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
++. |.|+|++++.. +..++++.|.+++||.+.||+.|+..+++++||+++ ..++++..++.|.++.++
T Consensus 274 ~~~-~~~~~~~~~~~-------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 274 PSG-TTFFLLRLKKG-------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ--RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp CCS-SSEEEEEESSS-------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHTC
T ss_pred CCC-CcEEEEECCCC-------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHH
Confidence 655 55678888752 568899988876899999999998666899999998 556666677766666543
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.7e-18 Score=126.23 Aligned_cols=136 Identities=17% Similarity=0.228 Sum_probs=108.4
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||+++ ++++++.+.+....++++.+.|.++..++++.. +.++.++.+.++++.+.+.|+++|+++.
T Consensus 199 ~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 273 (337)
T 3p1t_A 199 SYGLAGLRLGALFG-PSELIAAMKRKQWFCNVGTLDLHALEAALDNDR----AREAHIAKTLAQRRRVADALRGLGYRVA 273 (337)
T ss_dssp TTCCTTTCCEEEEC-CHHHHHHHHTTSCTTCSCHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred hccCcchheEEEEe-CHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHCcCEEC
Confidence 47899999999999 999999998887778899999999999999853 2345555566778899999999899988
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+++++| +|+..+. ..++.+.|. ++||.+.||..|+. ++++|||++ +.++++..++.|.++.
T Consensus 274 ~~~~~~-~~~~~~~---------~~~~~~~l~-~~gi~v~~g~~~~~--~~~iRis~~--~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 274 SSEANF-VLVENAA---------GERTLRFLR-ERGIQVKDAGQFGL--HHHIRISIG--REEDNDRLLAALAEYS 334 (337)
T ss_dssp CCSSSE-EEEECTT---------THHHHHHHH-HTTEECEEGGGGTC--CSEEEEECC--CHHHHHHHHHHHHHHT
T ss_pred CCCCeE-EEEEcCC---------HHHHHHHHH-HCCeEEEECccCCC--CCeEEEecC--CHHHHHHHHHHHHHHh
Confidence 888775 4555553 345666665 48999999999875 689999998 5678788777777654
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-18 Score=128.12 Aligned_cols=132 Identities=14% Similarity=0.172 Sum_probs=110.8
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||+++ ++++++.+......+++|.+.|.++..+|++. +++++.++.++++++++.+.|+++|+++.
T Consensus 203 ~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 277 (335)
T 1uu1_A 203 AFSLAAQRVGYVVA-SEKFIDAYNRVRLPFNVSYVSQMFAKVALDHR----EIFEERTKFIVEERERMKSALREMGYRIT 277 (335)
T ss_dssp TTTCGGGCCEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHHHHHHHHHHTCCBC
T ss_pred hcCCcccCeEEEEe-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHCCcEEc
Confidence 37899999999999 99999999887777789999999999999874 46778888999999999999998888765
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
|.+|+|+|++++. . +..++.+.|.+ +||.+.| .++++|||++. .+++++++++|.++
T Consensus 278 -~~~~~~~~~~~~~-~------~~~~~~~~l~~-~gi~v~~-------~~~~iRis~~~--~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 278 -DSRGNFVFVFMEK-E------EKERLLEHLRT-KNVAVRS-------FREGVRITIGK--REENDMILRELEVF 334 (335)
T ss_dssp -CCCSSEEEEECCT-H------HHHHHHHHHHH-HTEEEEE-------ETTEEEEECCC--HHHHHHHHHHHHCC
T ss_pred -CCCCeEEEEECCC-C------CHHHHHHHHHH-CCEEEEE-------CCCeEEEEeCC--HHHHHHHHHHHHhh
Confidence 4567789999975 2 67889998886 8999998 25799999974 56788888888653
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=6.9e-18 Score=127.28 Aligned_cols=137 Identities=16% Similarity=0.217 Sum_probs=118.2
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcccc
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECAK 81 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~ 81 (163)
+++|+|+||+++ ++++++.+......+++|.+.|.++..+|++ .+++++.++.++++++.+.+.|+++ |+++.
T Consensus 229 ~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~- 302 (367)
T 3euc_A 229 GLAGIRLGYVAG-DPQWLEQLDKVRPPYNVNVLTEATALFALEH----VAVLDEQAAQLRAERSRVAEGMAAHGGVTVF- 302 (367)
T ss_dssp TSCSCCEEEEEE-CHHHHHHHGGGCCSSCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-
T ss_pred cccccCceeeee-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-
Confidence 789999999999 9999999988887788999999999999998 3667889999999999999999998 88865
Q ss_pred CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 82 SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
+.+|+|+|++++ +..++.+.|.+ +||.+.||..|+...++++||+++ +.++++++++.|.++++
T Consensus 303 ~~~~~~~~~~~~---------~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 303 PSAANFLLARVP---------DAAQTFDRLLA-RKVLIKNVSKMHPLLANCLRVTVS--TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp CCSSSEEEEECS---------CHHHHHHHHHT-TTEECEECGGGCGGGTTEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEECC---------CHHHHHHHHHH-CCeEEEECCccCCCCCCEEEEecC--CHHHHHHHHHHHHHHhc
Confidence 556778899987 35778887765 899999999887555789999988 77899999999988753
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-18 Score=129.41 Aligned_cols=135 Identities=15% Similarity=0.236 Sum_probs=109.5
Q ss_pred CCCCCceeEEEE--EecCHH----HHHHHHHhhc--ccCCChHHHHHHHHhcCChHHH---HHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVI--YSYNNS----VLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFV---QKFININRERLRRLYVKFV 69 (163)
Q Consensus 1 ~~~~~G~RiG~~--i~~~~~----~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~l~ 69 (163)
+||+||+|+||+ ++++++ +++.+..... ..+++.+.|.++..+|+++.+. .+++++.++.++++++++.
T Consensus 259 ~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (409)
T 4eu1_A 259 NFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLV 338 (409)
T ss_dssp TSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999997 554777 6666666544 3567899999999999986421 4557899999999999999
Q ss_pred HHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHH
Q 042816 70 AGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDI 145 (163)
Q Consensus 70 ~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l 145 (163)
+.|+++| +++..|++|+|+|++++ .+++..+++++||.+.|| .||+++..+.+++
T Consensus 339 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ll~~~gv~v~p~----------~Ri~~~~~~~~~i 397 (409)
T 4eu1_A 339 SELKACGSVHDWSHIERQVGMMAYTGLT-----------REQVELLRSEYHIYMTLN----------GRAAVSGLNSTNV 397 (409)
T ss_dssp HHHHHTTCCSCCHHHHHSCSSEEECCCC-----------HHHHHHHHHHHCEECCTT----------CEEEGGGCCTTTH
T ss_pred HHHHhcCCCCCcceecCCceEEEEeCCC-----------HHHHHHHHHcCCEEEcCC----------CEEEEEecCHhhH
Confidence 9999986 88889999999997665 245667777689999986 3899987788889
Q ss_pred HHHHHHHHHHH
Q 042816 146 HVVMERIRRIS 156 (163)
Q Consensus 146 ~~~~~~l~~~~ 156 (163)
+.+++.|.+++
T Consensus 398 ~~~~~~l~~~l 408 (409)
T 4eu1_A 398 EYVSQAIHNVT 408 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998775
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-17 Score=124.04 Aligned_cols=135 Identities=16% Similarity=0.172 Sum_probs=113.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.||+||+|+||+++ ++++++.+......+++|.+.|.++..++++. +++++.++.++++++.+.+.|++.|+++.
T Consensus 232 ~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 306 (369)
T 3cq5_A 232 AFDFAGGRLGYFVA-NPAFIDAVMLVRLPYHLSALSQAAAIVALRHS----ADTLGTVEKLSVERVRVAARLEELGYAVV 306 (369)
T ss_dssp TTSCGGGCCEEEEE-CTHHHHHHHTTSCTTCSCHHHHHHHHHHHHTH----HHHHTHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred hcCCcccceEEEEe-CHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHhCCCEEC
Confidence 37889999999999 88999999887777789999999999999874 56788899999999999999988888887
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
++ +|.|+|++++. +..++.+.|.+ +||.+.|| + .++++||+++ ++++++++++.|.++++
T Consensus 307 ~~-~~~~~~~~~~~--------~~~~l~~~l~~-~gi~v~~~---~--~~~~iRis~~--~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 307 PS-ESNFVFFGDFS--------DQHAAWQAFLD-RGVLIRDV---G--IAGHLRTTIG--VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp CC-SSSEEEEECCS--------SHHHHHHHHHH-TTEECBCC---S--CTTEEEEECC--CHHHHHHHHHHHHHHHT
T ss_pred CC-CCeEEEEECCC--------CHHHHHHHHHH-CCEEEEEC---C--CCCeEEEEeC--CHHHHHHHHHHHHHHHh
Confidence 55 45678888872 56888888865 89999998 2 2689999998 67889999999988764
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-17 Score=128.88 Aligned_cols=140 Identities=17% Similarity=0.218 Sum_probs=113.1
Q ss_pred CCCCCceeEEEE--Ee--------cCH----HHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHH---HHHHHHHHHHH
Q 042816 1 DLSLPGFRISVI--YS--------YNN----SVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFV---QKFININRERL 61 (163)
Q Consensus 1 ~~~~~G~RiG~~--i~--------~~~----~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~ 61 (163)
.||++|+|+||+ ++ +++ ++++.+..... ..+++.+.|.++..+|.++.+. .++++++++.+
T Consensus 278 ~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~ 357 (448)
T 3meb_A 278 NFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARI 357 (448)
T ss_dssp TSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 478999999998 65 456 66666666544 3468889999999999987431 35689999999
Q ss_pred HHHHHHHHHHhhhc---C------CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCce
Q 042816 62 RRLYVKFVAGLRQL---G------IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGW 132 (163)
Q Consensus 62 ~~~~~~l~~~l~~~---g------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~ 132 (163)
+++++++.+.|+++ + +++..|++|+|+|+.++ .+++..|++++||.+.||+
T Consensus 358 ~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------~~~~~~ll~~~gV~v~~G~--------- 417 (448)
T 3meb_A 358 HRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT-----------PEHVDYLKEKWSIYLVKAG--------- 417 (448)
T ss_dssp HHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEEECSGG---------
T ss_pred HHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC-----------HHHHHHHHHhCCEEEeCCC---------
Confidence 99999999999987 4 66778999999998875 3566677777899999986
Q ss_pred EEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 133 FSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 133 iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
.|||++..+.+++++++++|.++++++.
T Consensus 418 gRis~a~~~~~~i~~~~~~l~~~l~~~~ 445 (448)
T 3meb_A 418 GRMSMCGLTESNCDYVAEAIHDAVTKLP 445 (448)
T ss_dssp GEEEGGGCCTTTHHHHHHHHHHHHHHSC
T ss_pred cEEEEecCCHHHHHHHHHHHHHHHHhcc
Confidence 2999987678889999999999988653
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=128.82 Aligned_cols=139 Identities=15% Similarity=0.184 Sum_probs=104.6
Q ss_pred CCCCCceeEEEEEecC--HH----HHHHHHHhhc--ccCCChHHHHHHHHhcCChHHH---HHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYN--NS----VLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFV---QKFININRERLRRLYVKFV 69 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~--~~----~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~l~ 69 (163)
+|+++|+|+||+++++ .+ +...+..... .++++...|.++..++.++... .++++.+++.|+++++.+.
T Consensus 266 ~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~ 345 (420)
T 4h51_A 266 NMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVY 345 (420)
T ss_dssp TSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999832 12 2222222222 3578889999999999986421 5678899999999999999
Q ss_pred HHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHH
Q 042816 70 AGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDI 145 (163)
Q Consensus 70 ~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l 145 (163)
+.|++.| +.+..+++|||.|+.+.+ +.++.| +++||+++||. |||++.++.+++
T Consensus 346 ~~L~~~g~~~~~~~i~~q~GmF~~~gls~-----------e~v~~L-~e~~Vy~~~~g----------Ris~Agl~~~ni 403 (420)
T 4h51_A 346 DELLRLQTPGSWEHVINQIGMFSFLGLSK-----------AQCEYC-QNHNIFITVSG----------RANMAGLTHETA 403 (420)
T ss_dssp HHHHHTTCSSCCTHHHHCCSSEEECCCCH-----------HHHHHH-HHTTEECCTTC----------EEEGGGCCHHHH
T ss_pred HHHHHhCCCCCCCeecCCCceEEecCcCH-----------HHHHHH-HhCCEEEcCCC----------EEEeccCCHHHH
Confidence 9999984 556778999999976652 234545 55999998852 999998899999
Q ss_pred HHHHHHHHHHHHHhhh
Q 042816 146 HVVMERIRRISQTCKS 161 (163)
Q Consensus 146 ~~~~~~l~~~~~~~~~ 161 (163)
+.+.++|.+++++..+
T Consensus 404 ~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 404 LMLAQTINDAVRNVNR 419 (420)
T ss_dssp HHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999987654
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-17 Score=123.97 Aligned_cols=135 Identities=15% Similarity=0.220 Sum_probs=106.5
Q ss_pred CCCCCceeEEEEEe--cCHH----HHHHHHHhhcc--cCCChHHHHHHHHhcCChHHH---HHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYS--YNNS----VLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFV---QKFININRERLRRLYVKFV 69 (163)
Q Consensus 1 ~~~~~G~RiG~~i~--~~~~----~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~l~ 69 (163)
+||+||+|+||+++ .+++ +.+.+...... .+++.+.|.+++.+++++.+. .++++++++.++++++++.
T Consensus 251 ~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~ 330 (401)
T 7aat_A 251 NMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLV 330 (401)
T ss_dssp TSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999886 2555 55555555442 567788899898889886431 4668899999999999999
Q ss_pred HHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHH
Q 042816 70 AGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDI 145 (163)
Q Consensus 70 ~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l 145 (163)
+.|+++| +++..|++|+|+|++++ .++...+++++||.+.|+ +|||++..+.+++
T Consensus 331 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ll~~~gi~v~~~----------~Ris~~~~~~~~i 389 (401)
T 7aat_A 331 SNLKKEGSSHNWQHITDQIGMFCFTGLK-----------PEQVERLTKEFSIYMTKD----------GRISVAGVASSNV 389 (401)
T ss_dssp HHHHHTTCCSCCHHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEECCTT----------CEEEGGGCCTTTH
T ss_pred HHHHhcCCCCCCceecCCcceEEecCCC-----------HHHHHHHHHhCCEeccCC----------CeEEeccCChhhH
Confidence 9999875 77888999999998765 233456767689999864 6999987677889
Q ss_pred HHHHHHHHHHH
Q 042816 146 HVVMERIRRIS 156 (163)
Q Consensus 146 ~~~~~~l~~~~ 156 (163)
+.+++.|.+++
T Consensus 390 ~~~~~~l~~~~ 400 (401)
T 7aat_A 390 GYLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998875
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.3e-17 Score=123.43 Aligned_cols=135 Identities=16% Similarity=0.288 Sum_probs=106.2
Q ss_pred CCCCCceeEEEEEe--cCHHHHHHH----HHhhc--ccCCChHHHHHHHHhcCChHH---HHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYS--YNNSVLAAA----KKLAR--FSSVSAPSQNLLVSMLSDTKF---VQKFININRERLRRLYVKFV 69 (163)
Q Consensus 1 ~~~~~G~RiG~~i~--~~~~~~~~~----~~~~~--~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l~ 69 (163)
.||+||+|+||+++ +++++++.+ ..... ..+++.+.|.++..++.++.+ .+++++++++.|+++++++.
T Consensus 270 ~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 349 (420)
T 4f4e_A 270 SFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLV 349 (420)
T ss_dssp TTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999864 356766543 22222 346788999999999988642 15778999999999999999
Q ss_pred HHhhhc----CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHH
Q 042816 70 AGLRQL----GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDI 145 (163)
Q Consensus 70 ~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l 145 (163)
+.|+++ |+++..|++|+|+|++++. ..+ ..+++++||.+.|+ .|||++..+++++
T Consensus 350 ~~L~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~~-~~~l~~~gI~v~~~----------~Ris~~~~~~~~i 408 (420)
T 4f4e_A 350 ERLKAAGIERDFSFINAQRGMFSYSGLTS----------AQV-DRLREEFGIYAVST----------GRICVAALNTRNL 408 (420)
T ss_dssp HHHHHTTCSSCCTHHHHSCSSEEECCCCH----------HHH-HHHHHHHCEECCTT----------SEEEGGGCCTTTH
T ss_pred HHHHhcCCCCCceeECCCccEEEEeCCCH----------HHH-HHHHHhCCEEecCC----------CeEEEecCCHHHH
Confidence 999987 6889999999999988752 334 44555689999985 2999987678889
Q ss_pred HHHHHHHHHHH
Q 042816 146 HVVMERIRRIS 156 (163)
Q Consensus 146 ~~~~~~l~~~~ 156 (163)
++++++|.+++
T Consensus 409 ~~~~~~l~~~l 419 (420)
T 4f4e_A 409 DVVANAIAAVL 419 (420)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998875
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=122.38 Aligned_cols=138 Identities=17% Similarity=0.235 Sum_probs=109.6
Q ss_pred CCCCCceeEEEEEe--cCHH----HHHHHHHhhc-cc-CCChHHHHHHHHhcCChHHH---HHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYS--YNNS----VLAAAKKLAR-FS-SVSAPSQNLLVSMLSDTKFV---QKFININRERLRRLYVKFV 69 (163)
Q Consensus 1 ~~~~~G~RiG~~i~--~~~~----~~~~~~~~~~-~~-~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~l~ 69 (163)
.||++|+|+||+++ .+++ +++.+..... .+ +++.+.|.++..+|++..+. ++++++.++.++++++++.
T Consensus 259 ~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (412)
T 1ajs_A 259 NFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELR 338 (412)
T ss_dssp TSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999998 3566 5555555332 33 46999999999999887411 4678999999999999999
Q ss_pred HHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHH
Q 042816 70 AGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDI 145 (163)
Q Consensus 70 ~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l 145 (163)
+.|++++ +++..|++|+|+|++++ .++...+++++||.+.|+ +||+++..+++++
T Consensus 339 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~gv~v~~~----------~Ris~~~~~~~~i 397 (412)
T 1ajs_A 339 ARLEALKTPGTWNHITDQIGMFSFTGLN-----------PKQVEYLINQKHIYLLPS----------GRINMCGLTTKNL 397 (412)
T ss_dssp HHHHHTTCSSCCHHHHHCCSSEEECCCC-----------HHHHHHHHHTTCEECCTT----------SEEEGGGCCTTTH
T ss_pred HHHHhhCCCCCeeEEcCCCceEEEeCCC-----------HHHHHHHHHhCCEEecCC----------cEEEeeeCCHHHH
Confidence 9999886 88888999999998764 234555666689999974 5999995588999
Q ss_pred HHHHHHHHHHHHHh
Q 042816 146 HVVMERIRRISQTC 159 (163)
Q Consensus 146 ~~~~~~l~~~~~~~ 159 (163)
++++++|.++++++
T Consensus 398 ~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 398 DYVATSIHEAVTKI 411 (412)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=120.97 Aligned_cols=134 Identities=15% Similarity=0.185 Sum_probs=105.7
Q ss_pred CCCCCceeEEEEEe--cCHHHHHHHHHhh-----c-ccCCChHHHHHHHHhcCChHH---HHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYS--YNNSVLAAAKKLA-----R-FSSVSAPSQNLLVSMLSDTKF---VQKFININRERLRRLYVKFV 69 (163)
Q Consensus 1 ~~~~~G~RiG~~i~--~~~~~~~~~~~~~-----~-~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l~ 69 (163)
.||+||+|+||+++ .++++++.+.... . ..+++.+.|.++..++.++.+ ..+++++.++.++++++++.
T Consensus 248 ~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 327 (397)
T 3fsl_A 248 IFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELV 327 (397)
T ss_dssp TTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999975 3667666543221 1 245688999999999998642 15778999999999999999
Q ss_pred HHhhhc----CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHH
Q 042816 70 AGLRQL----GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDI 145 (163)
Q Consensus 70 ~~l~~~----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l 145 (163)
+.|+++ |+++..|++|+|+|++++. ..+. .+++++||.+.||. ||+++..+++++
T Consensus 328 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~l~~~gi~v~~g~----------Ris~~~~~~~~i 386 (397)
T 3fsl_A 328 KVLSTEMPERNFDYLLNQRGMFSYTGLSA----------AQVD-RLREEFGVYLIASG----------RMCVAGLNTANV 386 (397)
T ss_dssp HHHHHHCTTSCCTHHHHCCSSEEECCCCH----------HHHH-HHHHTTCEECCTTC----------EEEGGGCCTTTH
T ss_pred HHHHhcCCCCCceeecCCceEEEecCCCH----------HHHH-HHHHhCCEEECCCC----------eEEEEecCHhhH
Confidence 999987 6899999999999988752 3344 45556999999973 999987677889
Q ss_pred HHHHHHHHHH
Q 042816 146 HVVMERIRRI 155 (163)
Q Consensus 146 ~~~~~~l~~~ 155 (163)
++++++|.++
T Consensus 387 ~~~~~~l~~~ 396 (397)
T 3fsl_A 387 QRVAKAFAAV 396 (397)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999875
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=8.2e-17 Score=123.27 Aligned_cols=138 Identities=15% Similarity=0.212 Sum_probs=110.9
Q ss_pred CCCCCceeEEEEE--e----cCHH----HHHHHHHhhc-c-cCCChHHHHHHHHhcCChHHH---HHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIY--S----YNNS----VLAAAKKLAR-F-SSVSAPSQNLLVSMLSDTKFV---QKFININRERLRRLY 65 (163)
Q Consensus 1 ~~~~~G~RiG~~i--~----~~~~----~~~~~~~~~~-~-~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~~ 65 (163)
.||++|+|+||++ + .+++ +++.+..... . .+++.+.|.++..+|++..+. ++++++.++.+++++
T Consensus 255 ~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (412)
T 1yaa_A 255 NAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMR 334 (412)
T ss_dssp TSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999998 5 2555 7887777433 2 456899999999999987421 468899999999999
Q ss_pred HHHHHHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCC
Q 042816 66 VKFVAGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLT 141 (163)
Q Consensus 66 ~~l~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~ 141 (163)
+++.+.|++++ +++..|++|+|+|++++ ...+ ..+++++||.+.| ++|||++..+
T Consensus 335 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~l~~~gi~v~~----------~~Ris~~~~~ 393 (412)
T 1yaa_A 335 HALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT----------PQMV-KRLEETHAVYLVA----------SGRASIAGLN 393 (412)
T ss_dssp HHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC----------HHHH-HHHHHHHCEECCT----------TSEEEGGGCC
T ss_pred HHHHHHHHhhCCCCCeeeeccCceEEEeeCCC----------HHHH-HHHHHhCCEEecc----------CcEEEEccCC
Confidence 99999999886 88889999999998664 2345 5566668999987 4799998668
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 042816 142 EKDIHVVMERIRRISQTC 159 (163)
Q Consensus 142 ~~~l~~~~~~l~~~~~~~ 159 (163)
+++++++++.|.++++.+
T Consensus 394 ~~~i~~~~~~l~~~~~~~ 411 (412)
T 1yaa_A 394 QGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp TTTHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHhh
Confidence 899999999999987653
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=8.9e-17 Score=122.25 Aligned_cols=133 Identities=16% Similarity=0.233 Sum_probs=104.5
Q ss_pred CCCCCceeEEEEEe--cCH----HHHHHHHHhhc-c-cCCChHHHHHHHHhcCCh----HHHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYS--YNN----SVLAAAKKLAR-F-SSVSAPSQNLLVSMLSDT----KFVQKFININRERLRRLYVKF 68 (163)
Q Consensus 1 ~~~~~G~RiG~~i~--~~~----~~~~~~~~~~~-~-~~~s~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~l 68 (163)
.||+||+|+||+++ +++ ++++.+..... . .+++.+.|.++..+|++. .+ ++++++.++.++++++++
T Consensus 247 ~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~-~~~~~~~~~~~~~~~~~l 325 (396)
T 2q7w_A 247 NFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIW-EQELTDMRQRIQRMRQLF 325 (396)
T ss_dssp TTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHH-HHHHHHC-CHHHHHHHHH
T ss_pred cccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 47899999999996 355 45555554332 2 356999999999999986 33 578899999999999999
Q ss_pred HHHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhH
Q 042816 69 VAGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKD 144 (163)
Q Consensus 69 ~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~ 144 (163)
.+.|++++ +++.+|++|+|+|++++ ... ...+++++||.+.|| +||+++..++++
T Consensus 326 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~l~~~gv~v~~~----------~Ris~~~~~~e~ 384 (396)
T 2q7w_A 326 VNTLQEKGANRDFSFIIKQNGMFSFSGLT----------KEQ-VLRLREEFGVYAVAS----------GRVNVAGMTPDN 384 (396)
T ss_dssp HHHHHHTTCCSCCTHHHHCCSSEEECCCC----------HHH-HHHHHHHHCEECCTT----------CEEEGGGCCTTT
T ss_pred HHHHHhcCCCCCcceecCCCceEEEecCC----------HHH-HHHHHHhcCeeecCC----------ceEEEeecCHHH
Confidence 99999986 88888999999998765 133 444555589999984 699998658899
Q ss_pred HHHHHHHHHHH
Q 042816 145 IHVVMERIRRI 155 (163)
Q Consensus 145 l~~~~~~l~~~ 155 (163)
+++++++|.++
T Consensus 385 i~~~~~~l~~~ 395 (396)
T 2q7w_A 385 MAPLCEAIVAV 395 (396)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999875
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.3e-16 Score=117.54 Aligned_cols=134 Identities=12% Similarity=0.164 Sum_probs=103.6
Q ss_pred CCCCCceeEEEEEe--cCHHHHHHH----HHhhc--ccCCChHHHHHHHHhcCChH---HHHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYS--YNNSVLAAA----KKLAR--FSSVSAPSQNLLVSMLSDTK---FVQKFININRERLRRLYVKFV 69 (163)
Q Consensus 1 ~~~~~G~RiG~~i~--~~~~~~~~~----~~~~~--~~~~s~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~l~ 69 (163)
.||+||+|+||+++ +++++++.+ ..... ..+++++.|.++..+|++.. .+++++++.++.++++++++.
T Consensus 244 ~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 323 (394)
T 2ay1_A 244 NFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLA 323 (394)
T ss_dssp TTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999997 466654443 32222 23568999999999998762 125688999999999999999
Q ss_pred HHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHH
Q 042816 70 AGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDI 145 (163)
Q Consensus 70 ~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l 145 (163)
+.|++++ +++..|++|+|+|++++. ..+. .+++++||.+.|| +||+++..+++++
T Consensus 324 ~~L~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~~~-~~l~~~gi~v~~~----------~Ris~~~~~~~~i 382 (394)
T 2ay1_A 324 GELRDLSGSDRFGFVAEHRGMFSRLGATP----------EQVK-RIKEEFGIYMVGD----------SRINIAGLNDNTI 382 (394)
T ss_dssp HHHHHHHTSSTTTHHHHCCSSEEECCCCH----------HHHH-HHHHHHCEECCTT----------CEEEGGGCCTTTH
T ss_pred HHHHhcCCCCCeeEEcCCceEEEeeCCCH----------HHHH-HHHHhCCEEecCC----------CeEEeecCCHhhH
Confidence 9999874 888888999999988752 3444 4555589999884 5999986688999
Q ss_pred HHHHHHHHHH
Q 042816 146 HVVMERIRRI 155 (163)
Q Consensus 146 ~~~~~~l~~~ 155 (163)
++++++|.++
T Consensus 383 ~~~~~~l~~~ 392 (394)
T 2ay1_A 383 PILARAIIEV 392 (394)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999998875
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=114.90 Aligned_cols=144 Identities=17% Similarity=0.104 Sum_probs=115.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhh-c--ccCCChHHHH-HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLA-R--FSSVSAPSQN-LLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~-~--~~~~s~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
.||++| ||+++ ++++++.+.... . ..+++.+.|. ++..+|++. +++++.++.++++++++.+.|+++|
T Consensus 244 ~~~~~G---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g 315 (398)
T 3a2b_A 244 SLASLG---GFVAG-DADVIDFLKHNARSVMFSASMTPASVASTLKALEII----QNEPEHIEKLWKNTDYAKAQLLDHG 315 (398)
T ss_dssp TTCSSC---EEEEE-CHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH----HHCTHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCC---cEEEe-CHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHHHHHHHhcC
Confidence 367778 99999 899999988753 2 2456677776 455777542 3567889999999999999999988
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
+++.+|. |+++|++++... +..++++.|++ +||.+.||..|..+ +++++||+++. .+++++++++++|.+
T Consensus 316 ~~~~~~~-g~~~~~~~~~~~------~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~ 387 (398)
T 3a2b_A 316 FDLGATE-SPILPIFIRSNE------KTFWVTKMLQD-DGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVK 387 (398)
T ss_dssp CCBCSCC-SSEEEEECCCHH------HHHHHHHHHHH-TTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCcCCCC-CCEEEEEcCCHH------HHHHHHHHHHH-CCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHH
Confidence 8887776 578999997532 67889999987 69999999888643 36899999985 488999999999999
Q ss_pred HHHHhh
Q 042816 155 ISQTCK 160 (163)
Q Consensus 155 ~~~~~~ 160 (163)
+++++.
T Consensus 388 ~l~~~~ 393 (398)
T 3a2b_A 388 VFKQAE 393 (398)
T ss_dssp HHHHCC
T ss_pred HHHHhC
Confidence 988754
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-14 Score=109.84 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=111.9
Q ss_pred ceeEEEEEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAK 81 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 81 (163)
|++.||+++ ++++++.+...... .+.+.+.+.++...++.. .++.++.++.++++++++.+.|+++|+++.+
T Consensus 249 g~~gG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 324 (399)
T 3tqx_A 249 GASGGYTSG-HKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELL---KTEGPQLRKQLQENSRYFRAGMEKLGFQLVP 324 (399)
T ss_dssp SSCCEEEEE-CHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHHHHHHHHHHTCCBCC
T ss_pred cCceEEEEc-CHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 455599999 99999999876442 246666666666666543 3667899999999999999999999988886
Q ss_pred CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-CCCCceEEEEEe-cCChhHHHHHHHHHHHHHHHh
Q 042816 82 SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH-CIEPGWFSFSFT-LLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~-~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~~~~ 159 (163)
+.++ ++|+.++... +..++++.|++ +||.+.|+..+. ..+++++||+++ ..+++++++++++|.++++++
T Consensus 325 ~~~~-~~~~~~~~~~------~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 325 GNHP-IIPVMLGDAQ------LATNMADHLLQ-EGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp CSSS-EEEEEEECHH------HHHHHHHHHHH-TTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCC-EEEEEeCCHH------HHHHHHHHHHH-CCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence 6655 5777887542 67899999987 899999876554 234689999997 348899999999999999876
Q ss_pred h
Q 042816 160 K 160 (163)
Q Consensus 160 ~ 160 (163)
.
T Consensus 397 ~ 397 (399)
T 3tqx_A 397 G 397 (399)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-14 Score=109.99 Aligned_cols=144 Identities=13% Similarity=0.051 Sum_probs=114.2
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhc----ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLAR----FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~----~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
|.+| ||+++ ++++++.+..... ..+++.+.|.++...++.. +. .++.++.++++++++.+.|+++|++
T Consensus 251 ~~~g---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~-~~~~~~~~~~~~~~l~~~L~~~g~~ 322 (401)
T 1fc4_A 251 GASG---GYTAA-RKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV---EA-GSELRDRLWANARQFREQMSAAGFT 322 (401)
T ss_dssp SSSC---EEEEE-CHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH---HT-CHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCC---EEEEc-CHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4454 99999 9999999887653 2367888898888777643 22 4677888999999999999988888
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
+. +..|.++|++++... +..++.+.|.+ +||.+.||..|+.+ .++++||+++. .+++++++++++|.+++
T Consensus 323 ~~-~~~~~~~~~~~~~~~------~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 394 (401)
T 1fc4_A 323 LA-GADHAIIPVMLGDAV------VAQKFARELQK-EGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIG 394 (401)
T ss_dssp BC-CSSSSEEEEEEECHH------HHHHHHHHHHH-TTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cc-CCCCCEEEEEcCChH------HHHHHHHHHHH-CCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 77 566778899987532 67889998887 79999999877643 35799999983 38899999999999999
Q ss_pred HHhhhc
Q 042816 157 QTCKSH 162 (163)
Q Consensus 157 ~~~~~~ 162 (163)
++++.+
T Consensus 395 ~~~~~~ 400 (401)
T 1fc4_A 395 KQLGVI 400 (401)
T ss_dssp HHTTSC
T ss_pred HHhCCC
Confidence 887654
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=109.95 Aligned_cols=143 Identities=10% Similarity=0.074 Sum_probs=111.1
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhh--------------------c-cc-CCChHHHHHHHHhcCChHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLA--------------------R-FS-SVSAPSQNLLVSMLSDTKFVQKFININRE 59 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~--------------------~-~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~ 59 (163)
++.|| |+||+++ ++++++.+.... . .. +++.+.|.++..+++... +.++++.++
T Consensus 223 l~~~~-~~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~--~~~~~~~~~ 298 (393)
T 1vjo_A 223 LGCSP-GASPFTM-SSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIA--QEGLANCWQ 298 (393)
T ss_dssp TCSCS-SCEEEEE-CHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHH--HHCHHHHHH
T ss_pred ccCCC-ceEEEEE-CHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHH--HccHHHHHH
Confidence 67788 9999999 899988875420 1 23 678888998888887531 345788999
Q ss_pred HHHHHHHHHHHHhhhcCCccccCCc---eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEE
Q 042816 60 RLRRLYVKFVAGLRQLGIECAKSNG---GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFS 136 (163)
Q Consensus 60 ~~~~~~~~l~~~l~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~ 136 (163)
.++++++++.+.|++.|+++..|++ +.++|+.+|... +..++++.|.+++||.+.||+.|.. ++++||+
T Consensus 299 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis 370 (393)
T 1vjo_A 299 RHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGV------DGKAVARRLLNEHNIEVGGGLGELA--GKVWRVG 370 (393)
T ss_dssp HHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTC------CHHHHHHHHHHHHCEECEECCGGGT--TTEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCcccCCccccCCcEEEEEcCCCC------CHHHHHHHHHhhCCEEEecCccccC--CCEEEEe
Confidence 9999999999999988888887765 346777876432 6788999888745999999997753 6899999
Q ss_pred E-ec-CChhHHHHHHHHHHHHH
Q 042816 137 F-TL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 137 ~-~~-~~~~~l~~~~~~l~~~~ 156 (163)
+ +. .+++++++++++|.+++
T Consensus 371 ~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 371 LMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp CCGGGCSHHHHHHHHHHHHHHH
T ss_pred CCccCChHHHHHHHHHHHHHHh
Confidence 4 32 26667999999998875
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-14 Score=106.49 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=114.3
Q ss_pred CCCCceeEEEEEecCHHHHHHHH----------------Hh----hcccCCChHHHHHHHHhcCChHHHHHH--HHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAK----------------KL----ARFSSVSAPSQNLLVSMLSDTKFVQKF--ININRE 59 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~----------------~~----~~~~~~s~~~q~~~~~~l~~~~~~~~~--~~~~~~ 59 (163)
|+.|+ ++||+++ ++++++.+. .. ....+++.+.|.++..+++.- .++ +++.++
T Consensus 210 ~~~~~-g~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~g~~~~~~~ 284 (386)
T 2dr1_A 210 FGVPP-GLAIGAF-SERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRII---EKMGGKEKWLE 284 (386)
T ss_dssp TCCCS-SCEEEEE-CHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHH---HHTTCHHHHHH
T ss_pred ccCCC-ceEEEEE-CHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHH---HHhcCHHHHHH
Confidence 55552 4999999 888887762 22 113567888898888887653 333 678899
Q ss_pred HHHHHHHHHHHHhhhcCCccccCC---ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEE
Q 042816 60 RLRRLYVKFVAGLRQLGIECAKSN---GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFS 136 (163)
Q Consensus 60 ~~~~~~~~l~~~l~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~ 136 (163)
.++++++++.+.|+++|+++..|+ .+.++|++++... +..++++.|.+ +||.+.||..+. .++++||+
T Consensus 285 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~-~gi~v~~~~~~~--~~~~iRi~ 355 (386)
T 2dr1_A 285 MYEKRAKMVREGVREIGLDILAEPGHESPTITAVLTPPGI------KGDEVYEAMRK-RGFELAKGYGSV--KEKTFRIG 355 (386)
T ss_dssp HHHHHHHHHHHHHHHTTCCBSSCTTCBCSSEEEEECCTTC------CHHHHHHHHHH-TTEECEECCGGG--TTTEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeeCcCccccCCceEEEEcCCCC------CHHHHHHHHHH-CCeEEecCcccc--CCCEEEEE
Confidence 999999999999998888887775 3778899987532 67889999987 699999998654 26799999
Q ss_pred Eec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 137 FTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 137 ~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
++. .+++++++++++|.++++++..
T Consensus 356 ~~~~~~~~~i~~~~~~l~~~~~~~~~ 381 (386)
T 2dr1_A 356 HMGYMKFEDIQEMLDNLREVINELKK 381 (386)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 984 4889999999999999887653
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-13 Score=105.66 Aligned_cols=143 Identities=8% Similarity=0.022 Sum_probs=108.3
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhh----------------------c-ccCCChHHHHHHHHhcCChHHHHHH--HHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLA----------------------R-FSSVSAPSQNLLVSMLSDTKFVQKF--INI 56 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~----------------------~-~~~~s~~~q~~~~~~l~~~~~~~~~--~~~ 56 (163)
||++| ++||+++ ++++++.+.+.. . +.+++...+.++..+++.- .+. +++
T Consensus 224 ~~~~g-g~g~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~---~~~g~~~~ 298 (398)
T 2fyf_A 224 FASDG-GLWLAIM-SPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWL---VGNGGLDW 298 (398)
T ss_dssp TCSCS-SEEEEEE-CHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH---HHHTSHHH
T ss_pred cCCCC-ceEEEEE-CHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH---HHccCHHH
Confidence 67776 6999999 899888775321 1 2346666777777777532 333 788
Q ss_pred HHHHHHHHHHHHHHHhhhc-CCcccc--C--CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCc
Q 042816 57 NRERLRRLYVKFVAGLRQL-GIECAK--S--NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPG 131 (163)
Q Consensus 57 ~~~~~~~~~~~l~~~l~~~-g~~~~~--~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~ 131 (163)
.++.++++++++.+.|+++ |+++.. | .+++++|+++|..+ +..++.+.|.+ +||.+.||. ...+++
T Consensus 299 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~-~gI~v~~g~--~~~~~~ 369 (398)
T 2fyf_A 299 AVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDV------DAGTVAKILRA-NGIVDTEPY--RKLGRN 369 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTS------CHHHHHHHHHH-TTCBCCSCC--TTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCC------CHHHHHHHHHH-CCcEEecCc--ccCCCC
Confidence 8999999999999999998 887763 4 45668999997543 67889998887 699999873 222368
Q ss_pred eEEEEEec-CChhHHHHHHHHHHHHHHH
Q 042816 132 WFSFSFTL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 132 ~iRi~~~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
++||+++. .++++++.+++.|.+++++
T Consensus 370 ~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 370 QLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 99999983 3789999999999988764
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-13 Score=105.56 Aligned_cols=147 Identities=14% Similarity=0.008 Sum_probs=109.5
Q ss_pred CCCceeEEEEEecC-HHHHHHHHHhhccc--CCChHHHH-HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 3 SLPGFRISVIYSYN-NSVLAAAKKLARFS--SVSAPSQN-LLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 3 ~~~G~RiG~~i~~~-~~~~~~~~~~~~~~--~~s~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+++|.|+||+++ + +++++.+......+ +...+.+. ++..+++... +.++++.++.++++++++.+.|++.|++
T Consensus 227 ~l~g~~~G~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 303 (407)
T 2dkj_A 227 TLRGPRGGLILS-NDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEAL--QPEFKEYSRLVVENAKRLAEELARRGYR 303 (407)
T ss_dssp GGCCCSCEEEEE-SCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred cCCCCCceEEEE-CCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHhCCce
Confidence 467999999999 7 89999988776532 23333333 5555554421 3567888999999999999999988887
Q ss_pred ccc-CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCC----CCCCCceEEEEEec-----CChhHHHHH
Q 042816 79 CAK-SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSC----HCIEPGWFSFSFTL-----LTEKDIHVV 148 (163)
Q Consensus 79 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f----~~~~~~~iRi~~~~-----~~~~~l~~~ 148 (163)
+.. +.++.++|++++... .+..++.+.|.+ +||.+.||..| ....++++|++++. .++++++.+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~-~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~ 377 (407)
T 2dkj_A 304 IVTGGTDNHLFLVDLRPKG-----LTGKEAEERLDA-VGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLV 377 (407)
T ss_dssp EGGGSCSSSEEEEECGGGT-----CCHHHHHHHHHH-TTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHH
T ss_pred eecCCCCceEEEEECcccC-----CCHHHHHHHHHH-cCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHH
Confidence 765 467888999997410 156788887765 89999999765 22236799999963 488999999
Q ss_pred HHHHHHHHHH
Q 042816 149 MERIRRISQT 158 (163)
Q Consensus 149 ~~~l~~~~~~ 158 (163)
+++|.+++++
T Consensus 378 ~~~l~~~~~~ 387 (407)
T 2dkj_A 378 AELIDRALLE 387 (407)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998876
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-13 Score=104.06 Aligned_cols=145 Identities=13% Similarity=0.085 Sum_probs=110.7
Q ss_pred eeEEEEEecCHHHHHHHHHhhc-------------------------ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 042816 7 FRISVIYSYNNSVLAAAKKLAR-------------------------FSSVSAPSQNLLVSMLSDTKFVQKFININRERL 61 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~~-------------------------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 61 (163)
.++||+++ ++++++.+..... ..+++...+.++...+.... +..+++.++.+
T Consensus 216 ~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~ 292 (393)
T 3kgw_A 216 PGISLISF-NDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIA--EQGLENCWRRH 292 (393)
T ss_dssp SSCEEEEE-CHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHH--HHCHHHHHHHH
T ss_pred CceeEEEE-CHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHH--HhhHHHHHHHH
Confidence 34899999 9999998875432 12456666666666665321 33478889999
Q ss_pred HHHHHHHHHHhhhcCCccccCC----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE
Q 042816 62 RRLYVKFVAGLRQLGIECAKSN----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF 137 (163)
Q Consensus 62 ~~~~~~l~~~l~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~ 137 (163)
+++++++.+.|+++|+++..+. +++++|+.++... +..++.+.|++++||.+.||..+.. ++++||++
T Consensus 293 ~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRi~~ 364 (393)
T 3kgw_A 293 REATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAGY------NWRDIVSYVLDHFSIEISGGLGPTE--ERVLRIGL 364 (393)
T ss_dssp HHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTTB------CHHHHHHHHHHHHCEECBCCCGGGT--TTEEEEEC
T ss_pred HHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCCC------CHHHHHHHHHHhCCEEEeCCcccCC--CCEEEEEe
Confidence 9999999999999888876443 3677788887543 6789999998855999999985443 68999998
Q ss_pred -ecC-ChhHHHHHHHHHHHHHHHhhhc
Q 042816 138 -TLL-TEKDIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 138 -~~~-~~~~l~~~~~~l~~~~~~~~~~ 162 (163)
+.. +++++++++++|.++++++++.
T Consensus 365 ~~~~~~~~~i~~~~~~l~~~l~~~~~~ 391 (393)
T 3kgw_A 365 LGYNATTENVDRVAEALREALQHCPKN 391 (393)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHSCBC
T ss_pred cccCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 542 8899999999999999887654
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-14 Score=109.63 Aligned_cols=153 Identities=11% Similarity=0.038 Sum_probs=98.7
Q ss_pred CCCCc-eeEEEEEecCHHHHHHHHHh----h--cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 2 LSLPG-FRISVIYSYNNSVLAAAKKL----A--RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 2 ~~~~G-~RiG~~i~~~~~~~~~~~~~----~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
|+ +| +|+||+++ ++++++.+... . ..++.++++|.++..+|+.... +++.++.++..+..++.+.+.+.+
T Consensus 263 l~-~G~~r~G~~~~-~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 339 (430)
T 3i4j_A 263 LA-AGYAPLAGLLA-APQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVER-EDLTGAAKERGAQLLAGLQALQAR 339 (430)
T ss_dssp GT-TTSSCCEEEEE-CHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-CCccccEEEEE-CHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 45 38 99999999 99999999874 2 2367899999988888874321 344455555555555556565555
Q ss_pred c-CCccccCCceeEEEeecCCcccCCC---hhhHHHHHHHHHHhcCeEEcCCCCC-CCCCCceEEEEEe-cCChhHHHHH
Q 042816 75 L-GIECAKSNGGFYCWADMSGLISSYS---EKGELELWDKLLNVAKVNVTPGSSC-HCIEPGWFSFSFT-LLTEKDIHVV 148 (163)
Q Consensus 75 ~-g~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~gi~v~pg~~f-~~~~~~~iRi~~~-~~~~~~l~~~ 148 (163)
+ ++...++.|. |+|++++....... .....++++.|++ +||.+.|+..+ ...+++++||+++ ..++++++++
T Consensus 340 ~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~ 417 (430)
T 3i4j_A 340 FPQMMQVRGTGL-LLGVVLGDLATGQAFETPGIASRIGAAALK-RGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGL 417 (430)
T ss_dssp CTTEEEEEEETT-EEEEEEC------------CHHHHHHHHHH-TTEECC-----------CEEEECCCTTCCHHHHHHH
T ss_pred CCCeEEEEEEEE-EEEEEeccccccCCCccHHHHHHHHHHHHh-CCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHH
Confidence 5 4556666655 56667653110000 0123678888886 89999998433 2233689999987 3488999999
Q ss_pred HHHHHHHHHHh
Q 042816 149 MERIRRISQTC 159 (163)
Q Consensus 149 ~~~l~~~~~~~ 159 (163)
+++|.++++++
T Consensus 418 l~~l~~~l~~~ 428 (430)
T 3i4j_A 418 LALLAGALEDV 428 (430)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.2e-14 Score=106.47 Aligned_cols=146 Identities=14% Similarity=0.056 Sum_probs=108.0
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
.||++| ||+++ ++++++.+...... .+++++.|.++..+++.-. +..+++.++.++++++++.+.|++.|
T Consensus 249 ~~~~~G---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g 322 (401)
T 2bwn_A 249 AYGVFG---GYIAA-SARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLK--TAEGQKLRDAQQMHAKVLKMRLKALG 322 (401)
T ss_dssp TTCSCC---EEEEE-CHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCC---CEEec-CHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHCC
Confidence 367778 99999 89999888765431 2345567766666654321 11246778889999999999998888
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
+++.++.++ ++|++++... +..++++.|++++||.+.|+..|+.+ +.+++|++++. .++++++.+++.|.+
T Consensus 323 ~~~~~~~~~-~~~~~~~~~~------~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~ 395 (401)
T 2bwn_A 323 MPIIDHGSH-IVPVVIGDPV------HTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDL 395 (401)
T ss_dssp CCBCCCSSS-CEEEECCCHH------HHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CcccCCCCC-eEEEEeCChH------HHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHH
Confidence 888888877 6888887532 67889998875589999999877643 34699999983 388999999999998
Q ss_pred HHHHh
Q 042816 155 ISQTC 159 (163)
Q Consensus 155 ~~~~~ 159 (163)
+++++
T Consensus 396 ~~~~~ 400 (401)
T 2bwn_A 396 LWARC 400 (401)
T ss_dssp HC---
T ss_pred HHHhc
Confidence 87654
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-13 Score=102.57 Aligned_cols=147 Identities=12% Similarity=0.078 Sum_probs=110.1
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhh----cc---------------------cCCChHHHHHHHHhcCChHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLA----RF---------------------SSVSAPSQNLLVSMLSDTKFVQKFINI 56 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~----~~---------------------~~~s~~~q~~~~~~l~~~~~~~~~~~~ 56 (163)
+|.+|+ ||+++ ++++++.+.... .+ .+++...+.++..+++... +..+++
T Consensus 209 ~g~~G~--G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~ 283 (393)
T 2huf_A 209 GAPPGI--TPVSF-SHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMAC--EEGLPA 283 (393)
T ss_dssp CCCSSC--EEEEE-CHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHH--HHCHHH
T ss_pred ccCCCe--EEEEE-CHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHH--HhCHHH
Confidence 356787 99999 899999887651 10 1345556666666665421 123678
Q ss_pred HHHHHHHHHHHHHHHhhhcCCccccCC---ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceE
Q 042816 57 NRERLRRLYVKFVAGLRQLGIECAKSN---GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWF 133 (163)
Q Consensus 57 ~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~i 133 (163)
.++.++++++++.+.|+++|+++..|. +++++|++++... +..++.+.|++++||.+.||..|.. ++++
T Consensus 284 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~L~~~~gi~v~~g~~~~~--~~~~ 355 (393)
T 2huf_A 284 LIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGV------DWLKAAQYAMKTYLVEISGGLGPTA--GQVF 355 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTC------CHHHHHHHHHHHHCEECBCCCGGGT--TTEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCCC------CHHHHHHHHHHhCCEEEecCccccc--CCEE
Confidence 888999999999999998888877663 4568888887432 6788999888756999999987643 6899
Q ss_pred EEEE-ec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 134 SFSF-TL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 134 Ri~~-~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
||++ +. .+++++++++++|.+++++++.
T Consensus 356 Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~ 385 (393)
T 2huf_A 356 RIGLMGQNATTERVDRVLQVFQEAVAAVKP 385 (393)
T ss_dssp EEECCGGGCSHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEcccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999 52 2678899999999999987754
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.5e-14 Score=103.83 Aligned_cols=140 Identities=12% Similarity=0.057 Sum_probs=105.0
Q ss_pred CCCceeEEEEEecCHHHHHHHHH-------------h--hc--ccCCChHHHHHHHHhcCChHHHHHH-HHHHHHHHHHH
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKK-------------L--AR--FSSVSAPSQNLLVSMLSDTKFVQKF-ININRERLRRL 64 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~-------------~--~~--~~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~~~~~ 64 (163)
|.+| +||+++ ++++++.+.. . .. ..+++.+.+.++..+++.- .+. +++.++.++++
T Consensus 190 ~~~g--~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~ 263 (353)
T 2yrr_A 190 APPG--LAPIAA-SLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLV---LEEGVAARERRAREV 263 (353)
T ss_dssp CCSS--CEEEEE-CHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHH---HHHCHHHHHHHHHHH
T ss_pred CCCc--eEEEEE-CHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHH
Confidence 4466 699999 8888876641 0 11 2456777777666666542 233 67889999999
Q ss_pred HHHHHHHhhhcCCccccCC--ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE-ecCC
Q 042816 65 YVKFVAGLRQLGIECAKSN--GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF-TLLT 141 (163)
Q Consensus 65 ~~~l~~~l~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~-~~~~ 141 (163)
++++.+.|++.|+++..+. +++++|++++... +..++.+.|.+ +||.+.||..|.. ++++|+++ ...+
T Consensus 264 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~-~gi~v~~g~~~~~--~~~iRi~~~~~~~ 334 (353)
T 2yrr_A 264 YAWVLEELKARGFRPYPKASPLPTVLVVRPPEGV------DADRLVRALYA-EGVAVAGGIGPTR--GQVLRLGLMGEGA 334 (353)
T ss_dssp HHHHHHHHHHTTCEESCSSSBCTTEEEEECCTTC------CHHHHHHHHHH-TTEECEECCGGGT--TTCEEEECSGGGS
T ss_pred HHHHHHHHHHCCCccccCccCCCeEEEEECCCCC------CHHHHHHHHHH-CCEEEeCCccccC--CCeEEEecCccCC
Confidence 9999999988888777654 6778888887433 67889998887 7999999987653 67999999 3347
Q ss_pred hhHHH-HHHHHHHHHHH
Q 042816 142 EKDIH-VVMERIRRISQ 157 (163)
Q Consensus 142 ~~~l~-~~~~~l~~~~~ 157 (163)
.++++ +++++|.++++
T Consensus 335 ~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 335 RREAYQAFLKALDRALA 351 (353)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78888 99999998765
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=111.13 Aligned_cols=146 Identities=12% Similarity=0.036 Sum_probs=97.2
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL---- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---- 75 (163)
||. |+|+||+++ ++++++.+..... .++++++.|.++..+|+.-. + +...+.++++++.+.+.|++.
T Consensus 270 ~~~-GlriG~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~---~--~~~~~~~~~~~~~l~~~l~~~~~~~ 342 (426)
T 1sff_A 270 IAG-GFPLAGVTG-RAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE---Q--ENLLQKANDLGQKLKDGLLAIAEKH 342 (426)
T ss_dssp GGT-SSCCEEEEE-EHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH---H--TTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccC-CCceEEEEE-cHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH---h--cCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 565 999999999 8888887764322 35678899988886664321 1 122333344444444444432
Q ss_pred -CCccccCCceeEEEeecCCccc--CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHH
Q 042816 76 -GIECAKSNGGFYCWADMSGLIS--SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMER 151 (163)
Q Consensus 76 -g~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~ 151 (163)
.+...++. |+++|++++.... .+...++.++++.|++ +||.+.||..| ++++||+++ ..+++++++++++
T Consensus 343 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~----~~~iRi~~~~~~~~~~i~~~~~~ 416 (426)
T 1sff_A 343 PEIGDVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPY----YNVLRILVPLTIEDAQIRQGLEI 416 (426)
T ss_dssp TTEEEEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTT----SCEEEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHHH-CCcEEecCCCC----CCEEEEECCccCCHHHHHHHHHH
Confidence 12334455 6789999853110 0111256789998886 89999998764 579999986 4589999999999
Q ss_pred HHHHHHHhh
Q 042816 152 IRRISQTCK 160 (163)
Q Consensus 152 l~~~~~~~~ 160 (163)
|.+++++++
T Consensus 417 l~~~l~~~~ 425 (426)
T 1sff_A 417 ISQCFDEAK 425 (426)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999988764
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.5e-14 Score=105.73 Aligned_cols=139 Identities=19% Similarity=0.188 Sum_probs=108.2
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc-c---cCCChHHHHHHHHhcCChHHHHH-HHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR-F---SSVSAPSQNLLVSMLSDTKFVQK-FININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~-~---~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
||.+| ||+++ ++++++.+..... + .+++.+.|.++...++.. .+ +.++.++.++++++++.+.|+++|
T Consensus 238 ~~~~G---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~g 310 (384)
T 1bs0_A 238 FGVSG---AAVLC-SSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVI---RSDEGDARREKLAALITRFRAGVQDLP 310 (384)
T ss_dssp TSSCC---EEEEE-CHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH---HSHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhccC---cEEEe-CHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhcC
Confidence 56667 99999 8999998877543 2 257888888777777543 22 567888999999999999999988
Q ss_pred CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
+++.+ .+|.++|++++... +..++.+.|.+ +||.+.||..|+.+ +++++||+++. ++++++++++++|.+
T Consensus 311 ~~~~~-~~~~~~~~~~~~~~------~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~ 382 (384)
T 1bs0_A 311 FTLAD-SCSAIQPLIVGDNS------RALQLAEKLRQ-QGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHG 382 (384)
T ss_dssp CEECS-CCSSBCCEEEESHH------HHHHHHHHHHH-TTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred CcccC-CCCCEEEEEeCCHH------HHHHHHHHHHH-CCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHh
Confidence 88764 45667788887432 67889998887 79999999887632 35899999985 378899999999876
Q ss_pred H
Q 042816 155 I 155 (163)
Q Consensus 155 ~ 155 (163)
+
T Consensus 383 ~ 383 (384)
T 1bs0_A 383 N 383 (384)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.6e-13 Score=100.62 Aligned_cols=144 Identities=11% Similarity=-0.019 Sum_probs=107.3
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhh--------------------c--ccCCChHHHHHHHHhcCChHHHHHH-HHHHHH
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLA--------------------R--FSSVSAPSQNLLVSMLSDTKFVQKF-ININRE 59 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~--------------------~--~~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~ 59 (163)
|.+|+ ||+++ ++++++.+.... . ..+++...+.++..+++.- .++ +++.++
T Consensus 200 ~~~g~--G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~g~~~~~~ 273 (392)
T 2z9v_A 200 APPGL--TMMGV-SERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLY---LNEGPEAVWA 273 (392)
T ss_dssp CCSCC--EEEEE-CHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHH---HHHCHHHHHH
T ss_pred CCCce--eEEEE-CHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH---HhccHHHHHH
Confidence 44555 99999 899988886421 1 1245555566665666432 344 678899
Q ss_pred HHHHHHHHHHHHhhhcCCccccCC----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEE
Q 042816 60 RLRRLYVKFVAGLRQLGIECAKSN----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSF 135 (163)
Q Consensus 60 ~~~~~~~~l~~~l~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi 135 (163)
.++++++++.+.|+++|+++..|. .+.++|+.++... +..++.+.|.+++||.+.||..+.. ++++||
T Consensus 274 ~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~~~gi~v~~g~~~~~--~~~lRi 345 (392)
T 2z9v_A 274 RHALTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGV------DEKALRQAARARYGVVFSSGRGETL--GKLTRI 345 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTTC------CHHHHHHHHHHHHCEECEECCGGGT--TTEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeeccCCccccCCceEEEECCCCC------CHHHHHHHHHhcCCEEEecCCCCCC--CCeEEE
Confidence 999999999999988888777633 4677888887432 6788999888745999999986543 689999
Q ss_pred EE-e-cCChhHHHHHHHHHHHHHHHhh
Q 042816 136 SF-T-LLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 136 ~~-~-~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
++ + ..+++++++++++|.+++++++
T Consensus 346 ~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 346 GHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp ECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred eCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 95 5 4589999999999999998765
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.4e-13 Score=100.29 Aligned_cols=143 Identities=8% Similarity=-0.031 Sum_probs=109.9
Q ss_pred ceeEEEEEecCHHHHHHHHHhh--------------------------------------cccCCChHHHHHHHHhcCCh
Q 042816 6 GFRISVIYSYNNSVLAAAKKLA--------------------------------------RFSSVSAPSQNLLVSMLSDT 47 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~--------------------------------------~~~~~s~~~q~~~~~~l~~~ 47 (163)
+.++||+++ ++++++.+.... ...+++...+.++..+++..
T Consensus 205 ~~g~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~ 283 (411)
T 3nnk_A 205 PSGTSPITL-SARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLI 283 (411)
T ss_dssp CSSEEEEEE-CHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEE-CHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHH
Confidence 346899999 999999887654 01345666666666666543
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhhhcCCccccCCc---eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCC
Q 042816 48 KFVQKF-ININRERLRRLYVKFVAGLRQLGIECAKSNG---GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGS 123 (163)
Q Consensus 48 ~~~~~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~ 123 (163)
.++ +++.++.++++++++.+.|++.|+++..+.+ +.++|+.+|... +..++.+.|++++||.+.||.
T Consensus 284 ---~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~l~~~~gi~v~~g~ 354 (411)
T 3nnk_A 284 ---LQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQGI------NGDQARKLMLEDFGIEIGTSF 354 (411)
T ss_dssp ---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECCTTC------CHHHHHHHHHHHHSEEEEECC
T ss_pred ---HHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccEEEEECCCCC------CHHHHHHHHHHhcCeEEeCcc
Confidence 344 7889999999999999999998888876654 678888887543 678999988885699999984
Q ss_pred CCCCCCCceEEEEE-ecC-ChhHHHHHHHHHHHHHHHhh
Q 042816 124 SCHCIEPGWFSFSF-TLL-TEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 124 ~f~~~~~~~iRi~~-~~~-~~~~l~~~~~~l~~~~~~~~ 160 (163)
.. ..++++||++ +.. +++++++++++|.++++++.
T Consensus 355 ~~--~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 355 GP--LHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK 391 (411)
T ss_dssp GG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CC--CCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 32 2367999998 532 68999999999999998764
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-13 Score=101.19 Aligned_cols=140 Identities=6% Similarity=-0.059 Sum_probs=106.0
Q ss_pred eEEEEEecCHHHHHH---------HH----Hh--hc-ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 8 RISVIYSYNNSVLAA---------AK----KL--AR-FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 8 RiG~~i~~~~~~~~~---------~~----~~--~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
++||+++ ++++++. +. .. .. ..+++.+.+.++..+++.- .+++++.++.++++++++.+.
T Consensus 192 g~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~l~~~ 267 (352)
T 1iug_A 192 GLGFVAL-SPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEV---LPRLEEHLALKAWQNALLYGV 267 (352)
T ss_dssp CEEEEEE-CHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH---GGGHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEE-CHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4799999 8887654 22 11 11 2456777777777676542 233678899999999999999
Q ss_pred hhhcCCccccCC-ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecC-ChhHHHHHH
Q 042816 72 LRQLGIECAKSN-GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLL-TEKDIHVVM 149 (163)
Q Consensus 72 l~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~-~~~~l~~~~ 149 (163)
|++.|+++..|. .+.++|++++... +..++.+.|.+ +||.+.||... ..++++||+++.. +++++++++
T Consensus 268 L~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~-~gi~v~~~~~~--~~~~~iRi~~~~~~~~~~i~~~~ 338 (352)
T 1iug_A 268 GEEGGLRPVPKRFSPAVAAFYLPEGV------PYARVKEAFAQ-RGAVIAGGQGP--LKGKVFRLSLMGAYDRYEALGVA 338 (352)
T ss_dssp HHHTTCEESCSSBCTTCEEEECCTTC------CHHHHHHHHHT-TTEECEECCGG--GTTTEEEECCCSSCCHHHHHHHH
T ss_pred HHHCCCcccccccCCeEEEEEcCCCC------CHHHHHHHHHH-CCEEEEeCCCc--cCCCEEEEEccccCCHHHHHHHH
Confidence 998888887775 6778999987432 67889998876 79999998843 2368999999853 689999999
Q ss_pred HHHHHHHHHhh
Q 042816 150 ERIRRISQTCK 160 (163)
Q Consensus 150 ~~l~~~~~~~~ 160 (163)
++|.++++++.
T Consensus 339 ~~l~~~~~~~~ 349 (352)
T 1iug_A 339 GMFREVLEEIL 349 (352)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999988763
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=99.27 Aligned_cols=143 Identities=10% Similarity=0.027 Sum_probs=110.0
Q ss_pred eeEEEEEecCHHHHHHHHHhh-----------------------c--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 042816 7 FRISVIYSYNNSVLAAAKKLA-----------------------R--FSSVSAPSQNLLVSMLSDTKFVQKFININRERL 61 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~-----------------------~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 61 (163)
.++||+++ ++++++.+...+ . ..+++.+.|.++..+++.-. ++++++.++.+
T Consensus 211 ~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~ 287 (396)
T 2ch1_A 211 PGITPISI-SPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIA--EEGLENQIKRR 287 (396)
T ss_dssp SSCEEEEE-CHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHH--HHCHHHHHHHH
T ss_pred CCeEEEEE-CHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHH--HhhHHHHHHHH
Confidence 35599999 888888775421 1 13467778888777776521 35578889999
Q ss_pred HHHHHHHHHHhhhcCCccccCCce----eEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE
Q 042816 62 RRLYVKFVAGLRQLGIECAKSNGG----FYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF 137 (163)
Q Consensus 62 ~~~~~~l~~~l~~~g~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~ 137 (163)
+++++++.+.|+++|+++..+.++ .++|+.++... +..++.+.|++++||.+.||..+. .++++||++
T Consensus 288 ~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~L~~~~gi~v~~g~~~~--~~~~iRi~~ 359 (396)
T 2ch1_A 288 IECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGV------DWWKVSQYAMNNFSLEVQGGLGPT--FGKAWRVGI 359 (396)
T ss_dssp HHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTC------CHHHHHHHHHHHHCBCCBCCCGGG--TTTEEEEEC
T ss_pred HHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCCC------CHHHHHHHHHHhCCEEEecCcccc--CCCEEEEEC
Confidence 999999999999889888877764 37888887433 678899999875699999987543 368999999
Q ss_pred -e-cCChhHHHHHHHHHHHHHHHhh
Q 042816 138 -T-LLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 138 -~-~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+ ..+++++++++++|.+++++++
T Consensus 360 ~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 360 MGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp CGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 4 2378899999999999998765
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.48 E-value=5e-13 Score=100.07 Aligned_cols=139 Identities=16% Similarity=0.141 Sum_probs=106.1
Q ss_pred eeEEEEEecCHHHHHHHHHhh------------------c--ccCCChHHHHHHHHhcCChHHHHHH--HHHHHHHHHHH
Q 042816 7 FRISVIYSYNNSVLAAAKKLA------------------R--FSSVSAPSQNLLVSMLSDTKFVQKF--ININRERLRRL 64 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~------------------~--~~~~s~~~q~~~~~~l~~~~~~~~~--~~~~~~~~~~~ 64 (163)
.++||+++ ++++++.+.... . .++++.+.+.++..+++.- .++ +++.++.++++
T Consensus 199 ~g~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~g~~~~~~~~~~~~ 274 (366)
T 1m32_A 199 PGFAFVIA-REQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKEL---AKEGGVAARHQRYQQN 274 (366)
T ss_dssp SSEEEEEE-EHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH---HHHTHHHHHHHHHHHH
T ss_pred CceEEEEE-CHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHH---HHccCHhHHHHHHHHH
Confidence 35699999 888876654321 0 1356777777777776543 344 67889999999
Q ss_pred HHHHHHHhhhcCCccccC---CceeEEEeecCC--cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec
Q 042816 65 YVKFVAGLRQLGIECAKS---NGGFYCWADMSG--LISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL 139 (163)
Q Consensus 65 ~~~l~~~l~~~g~~~~~~---~~g~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~ 139 (163)
++++.+.|+++|+++..+ .+++++|++++. .. +..++.+.|.+ +||.+.||..|. ++++|++++.
T Consensus 275 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~-~gi~v~~~~~~~---~~~iRi~~~~ 344 (366)
T 1m32_A 275 QRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQY------RFSEFYRRLKE-QGFVIYPGKVSQ---SDCFRIGNIG 344 (366)
T ss_dssp HHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTC------CHHHHHHHHHH-TTEECEECCCSS---SCEEEEECCS
T ss_pred HHHHHHHHHHCCCeeccCchhcCceEEEEEcCccCCC------CHHHHHHHHHH-CCEEEECCcCCC---CCEEEEecCC
Confidence 999999999888777654 478899999874 22 67889998887 799999998874 6899999985
Q ss_pred C-ChhHHHHHHHHHHHHHHHh
Q 042816 140 L-TEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 140 ~-~~~~l~~~~~~l~~~~~~~ 159 (163)
. ++++++++++.|.++++++
T Consensus 345 ~~~~~~i~~~~~~l~~~~~~~ 365 (366)
T 1m32_A 345 EVYAADITALLTAIRTAMYWT 365 (366)
T ss_dssp SCCHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 3 6899999999999887654
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=106.07 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=109.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc-c---cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR-F---SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~-~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
||++| ||+++ ++++++.+..... + .+.+++.+.++...++.- ++++..++.++++++++.+.|++.|+
T Consensus 266 ~g~~g---G~v~~-~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~ 337 (427)
T 2w8t_A 266 VGTVG---GFVVS-NHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKL----MTAHEKRERLWSNARALHGGLKAMGF 337 (427)
T ss_dssp TCSCC---EEEEE-CCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hccCC---CEEEe-CHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56666 99999 8888888776532 2 245665555555666542 22467888899999999999998888
Q ss_pred ccc-cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-CCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 78 ECA-KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-EPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 78 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
.+. ++..|.++|+.++.. .+..++++.|++ +||.+.||..|..+ +.+++||+++. +++++++.++++|.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~------~~~~~l~~~L~~-~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~ 410 (427)
T 2w8t_A 338 RLGTETCDSAIVAVMLEDQ------EQAAMMWQALLD-GGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQA 410 (427)
T ss_dssp EESCSSCCSSEEEEEESSH------HHHHHHHHHHHH-TTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred cccCCCCCCCEEEEEECCH------HHHHHHHHHHHH-CCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 877 442456788888753 267889998887 69999999877643 35799999985 488999999999999
Q ss_pred HHHHhhhc
Q 042816 155 ISQTCKSH 162 (163)
Q Consensus 155 ~~~~~~~~ 162 (163)
+++++.+.
T Consensus 411 ~l~~~~~~ 418 (427)
T 2w8t_A 411 AGRAVGVI 418 (427)
T ss_dssp HHHHHTCC
T ss_pred HHHHhCcc
Confidence 99876543
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=99.57 Aligned_cols=145 Identities=8% Similarity=-0.006 Sum_probs=106.3
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHH-HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQ-NLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.+| ||+++ ++++++.+...... .+.+.+.| .++..+++... +.++++.++.++++++++.+.|+++|+++.
T Consensus 231 ~~g---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 304 (405)
T 2vi8_A 231 PRG---GMILC-QEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEAL--QDDFKAYAKRVVDNAKRLASALQNEGFTLV 304 (405)
T ss_dssp CSC---EEEEE-CHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHTTCEEG
T ss_pred CCC---eEEEE-cHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhCCCeEe
Confidence 556 99999 89999988776543 23333444 44445554321 246788899999999999999998888887
Q ss_pred cC-CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCC----CCCCCCceEEEEEec-----CChhHHHHHHH
Q 042816 81 KS-NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSS----CHCIEPGWFSFSFTL-----LTEKDIHVVME 150 (163)
Q Consensus 81 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~----f~~~~~~~iRi~~~~-----~~~~~l~~~~~ 150 (163)
.| .+++++|++++... .+..++.+.|.+ +||.+.||.. ++...++++||+++. +++++++.+++
T Consensus 305 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~ 378 (405)
T 2vi8_A 305 SGGTDNHLLLVDLRPQQ-----LTGKTAEKVLDE-VGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAA 378 (405)
T ss_dssp GGSCSSSEEEEECGGGT-----CCHHHHHHHHHH-HTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred cCCCCceEEEEEccCCC-----CCHHHHHHHHHH-cCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHH
Confidence 65 46889999987410 156778887755 8999999863 332235789999984 57899999999
Q ss_pred HHHHHHHHhh
Q 042816 151 RIRRISQTCK 160 (163)
Q Consensus 151 ~l~~~~~~~~ 160 (163)
+|.+++++.+
T Consensus 379 ~l~~~~~~~~ 388 (405)
T 2vi8_A 379 IIGLVLKNVG 388 (405)
T ss_dssp HHHHHHTCTT
T ss_pred HHHHHHhccc
Confidence 9999887653
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=104.23 Aligned_cols=147 Identities=16% Similarity=0.159 Sum_probs=103.4
Q ss_pred CCCCceeEEEEEecCHHH--HHHHHHh-----hcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 2 LSLPGFRISVIYSYNNSV--LAAAKKL-----ARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~--~~~~~~~-----~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
||++| +||+++ ++++ ...+... ...++++.+.|.++..+|+.. .+++++.++.++++++++.+.|++
T Consensus 205 ~g~~G--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~l~~~L~~ 278 (384)
T 1eg5_A 205 HGPKG--VGITYI-RKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA---VEELSEAAKHMEKLRSKLVSGLMN 278 (384)
T ss_dssp TSCTT--CEEEEE-CTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCc--eEEEEE-cCCCccccccccCcccccccCCCCChHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHhCC
Confidence 67888 799999 6664 2222111 112467888998888888763 456788999999999999999988
Q ss_pred cCCccccCC-c--eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-----------------CCceEE
Q 042816 75 LGIECAKSN-G--GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-----------------EPGWFS 134 (163)
Q Consensus 75 ~g~~~~~~~-~--g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-----------------~~~~iR 134 (163)
.|+++..+. + +.++++.++.. +..++.+.|.+ +||.+.||..|... .++++|
T Consensus 279 ~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 350 (384)
T 1eg5_A 279 LGAHIITPLEISLPNTLSVSFPNI-------RGSTLQNLLSG-YGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIR 350 (384)
T ss_dssp TTCEECSCTTSBCTTEEEEECTTC-------CHHHHHHHHHH-TTEECBC------------CHHHHTTCCHHHHHHEEE
T ss_pred CCeEEeCCcccCCCCEEEEEeCCC-------CHHHHHHHHhh-CCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEE
Confidence 787776553 2 33566666631 56788888865 89999999877532 147999
Q ss_pred EEEec-CChhHHHHHHHHHHHHHHHhhhc
Q 042816 135 FSFTL-LTEKDIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 135 i~~~~-~~~~~l~~~~~~l~~~~~~~~~~ 162 (163)
|+++. .+++++++++++|.+++++++.+
T Consensus 351 i~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 379 (384)
T 1eg5_A 351 ISLCKYNTEEEVDYFLKKIEEILSFLDLT 379 (384)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHC---
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99983 48899999999999999887653
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-12 Score=97.12 Aligned_cols=143 Identities=12% Similarity=0.100 Sum_probs=108.3
Q ss_pred ceeEEEEEecCHHHHHHHHHhh------------------------------------c----ccCCChHHHHHHHHhcC
Q 042816 6 GFRISVIYSYNNSVLAAAKKLA------------------------------------R----FSSVSAPSQNLLVSMLS 45 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~------------------------------------~----~~~~s~~~q~~~~~~l~ 45 (163)
+.++||+++ ++++++.+...+ . ..+++...+.++...++
T Consensus 203 ~~g~g~~~~-~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 281 (416)
T 3isl_A 203 PSGMAPITY-NERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVR 281 (416)
T ss_dssp CSSEEEEEE-CHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEE-CHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHH
Confidence 346899999 899988887432 1 12456677777666665
Q ss_pred ChHHHHHH-HHHHHHHHHHHHHHHHHHhhhcCCccccCCc---eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC
Q 042816 46 DTKFVQKF-ININRERLRRLYVKFVAGLRQLGIECAKSNG---GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP 121 (163)
Q Consensus 46 ~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p 121 (163)
.. .++ +++.++.+.++++++.+.|++.|+++..+.+ +.++++.++... +..++.+.|++++||.+.|
T Consensus 282 ~~---~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~~~gi~v~~ 352 (416)
T 3isl_A 282 LV---LEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEIPGGI------DGESVRDMLLAQFGIEIAS 352 (416)
T ss_dssp HH---HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCTTEEEEECCTTC------CHHHHHHHHHHHHCEECBC
T ss_pred HH---HHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCCcEEEEeCCCCC------CHHHHHHHHHHhCCEEEec
Confidence 43 444 7899999999999999999998888887764 567888887543 6789999998756999999
Q ss_pred CCCCCCCCCceEEEEEe-cCChhH-HHHHHHHHHHHHHHhh
Q 042816 122 GSSCHCIEPGWFSFSFT-LLTEKD-IHVVMERIRRISQTCK 160 (163)
Q Consensus 122 g~~f~~~~~~~iRi~~~-~~~~~~-l~~~~~~l~~~~~~~~ 160 (163)
|.... .++++||++. ..+.++ +++++++|.++++++.
T Consensus 353 g~~~~--~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 353 SFGPL--AGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHN 391 (416)
T ss_dssp CCSTT--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCC--CCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcC
Confidence 87432 3689999993 224455 9999999999988764
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5e-13 Score=102.89 Aligned_cols=147 Identities=12% Similarity=0.115 Sum_probs=97.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhh----cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLA----RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 75 (163)
||. |+|+||+++ ++++++.+.... ..++.++++|.++..+++.-. + +...+.++++++++.+.|++.
T Consensus 274 ~~~-G~~ig~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~---~--~~~~~~~~~~~~~l~~~l~~l~~ 346 (433)
T 1zod_A 274 LGA-GLPLAAIVT-SAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ---R--DGLVARANVMGDRLRRGLLDLME 346 (433)
T ss_dssp HHT-TSSCEEEEE-CHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHH---H--TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccC-CCCeeEEEE-hHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHH---h--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 454 899999999 899999887732 235678899988777775321 1 122334444455555555442
Q ss_pred --C-CccccCCceeEEEeecCCcc--cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHH
Q 042816 76 --G-IECAKSNGGFYCWADMSGLI--SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVM 149 (163)
Q Consensus 76 --g-~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~ 149 (163)
. +...++. |.|+|++++... +.....+..++++.|++ +||.+.||..|+ .++++||+++ ..+++++++++
T Consensus 347 ~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~--~~~~lRi~~~~~~t~~~i~~~l 422 (433)
T 1zod_A 347 RFDCIGDVRGR-GLLLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQLPG--MGGVFRIAPPLTVSEDEIDLGL 422 (433)
T ss_dssp HCTTEEEEEEE-TTEEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEECCTT--SCCEEEECCCTTCCHHHHHHHH
T ss_pred hCCCeEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHHH-CCCeEeccCCCC--CCCEEEEECCcCCCHHHHHHHH
Confidence 2 2334444 556788886421 00001246789988886 899999998775 2589999865 34899999999
Q ss_pred HHHHHHHHHh
Q 042816 150 ERIRRISQTC 159 (163)
Q Consensus 150 ~~l~~~~~~~ 159 (163)
++|.++++++
T Consensus 423 ~~l~~~l~~~ 432 (433)
T 1zod_A 423 SLLGQAIERA 432 (433)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988754
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=9.4e-13 Score=99.93 Aligned_cols=153 Identities=11% Similarity=0.019 Sum_probs=95.5
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChH--HHHHHHHHHHHHHHHHHHHHHHHhhhc----
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTK--FVQKFININRERLRRLYVKFVAGLRQL---- 75 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~---- 75 (163)
++|+|+||+++ ++++++.+...... .+++++.|.++...++... .++++.+..+..++++++.+.+.|...
T Consensus 210 l~g~~~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 288 (374)
T 2aeu_A 210 MEGPRGGLLAG-KKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNI 288 (374)
T ss_dssp SSSCSCEEEEE-EHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTE
T ss_pred ccCcceEEEEE-CHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 67899999999 89999998877653 3578888888777776421 111222222221122245556655552
Q ss_pred CCccc-cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChh--HHHHHHHHH
Q 042816 76 GIECA-KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEK--DIHVVMERI 152 (163)
Q Consensus 76 g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~--~l~~~~~~l 152 (163)
|+.+. .|.|.++.|.+++... ...++.+++..+++++||.+.||..|.. .++++||+++..+.+ +++...+.|
T Consensus 289 g~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~ll~~~gV~v~~g~~~~~-~~~~lRi~~~~~~~~~~~l~~l~~~l 364 (374)
T 2aeu_A 289 NIVYERTPTGFVIKRVYKDDTI---NIKKLIEIGFNLLKNYGIITITVAGMPG-ASKSLRIDLTSRDAERIDDNYIIKAI 364 (374)
T ss_dssp EEEEEECSSEEEEEEEESSHHH---HHHHHHHHHHHHHHHHCEECSTTSSSCS-SCCSEEEETTSGGGGGSCHHHHHHHH
T ss_pred CcceeeCCceEEEEeecccccc---cccchHHHHHHHHHhCCEEEecCCCCCC-CCCeEEEEcCCchHHHHHHHHHHHHH
Confidence 55654 4666666676654311 0012344777777778999999988743 367999999742222 377777777
Q ss_pred HHHHHHhhh
Q 042816 153 RRISQTCKS 161 (163)
Q Consensus 153 ~~~~~~~~~ 161 (163)
.++++++..
T Consensus 365 ~~~l~~~~~ 373 (374)
T 2aeu_A 365 VESIKMAFK 373 (374)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhc
Confidence 777776643
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=106.00 Aligned_cols=152 Identities=10% Similarity=0.005 Sum_probs=100.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE 78 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 78 (163)
++. |+|+||+++ ++++++.+..... .++.|+++|.++..+|+.... +++.++.++.....++.+.+.+..+ ++.
T Consensus 296 ~~~-G~~~G~~~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 372 (453)
T 4ffc_A 296 IAG-GMPLSAVTG-RAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE-LDLPARARAIEASVTSRLSALAEEVDIIG 372 (453)
T ss_dssp GGT-TSSCEEEEE-EHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCSSEE
T ss_pred hcC-CcCeEEEEE-CHHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 455 899999999 8999888775544 367899999988888864311 2333444444444444455544555 333
Q ss_pred cccCCceeEEEeecCCc-ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGL-ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
..++. |.++|+++... ...+......++++.|++ +||.+.|+..| .+++||+++. ++++++++++++|.+++
T Consensus 373 ~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~~~~~~t~e~i~~~l~~l~~~l 446 (453)
T 4ffc_A 373 EVRGR-GAMLAIEIVKPGTLEPDAALTKSIAAEALS-QGVLILTCGTF----GNVIRLLPPLVIGDDLLDEGITALSDII 446 (453)
T ss_dssp EEEEE-TTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECCEECTT----SCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEee-ceEEEEEEecCcccCCCHHHHHHHHHHHHh-CCCEEecCCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 33333 55777777431 011122356788888886 89999997554 3689998764 48899999999999999
Q ss_pred HHhhhc
Q 042816 157 QTCKSH 162 (163)
Q Consensus 157 ~~~~~~ 162 (163)
+++..+
T Consensus 447 ~~~~~~ 452 (453)
T 4ffc_A 447 RAKASH 452 (453)
T ss_dssp HHHC--
T ss_pred HHHHhc
Confidence 876543
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.8e-13 Score=100.58 Aligned_cols=142 Identities=11% Similarity=0.072 Sum_probs=106.3
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHh--------------hcccCCChHHHHHHHHhcCChHHHHH-HHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKL--------------ARFSSVSAPSQNLLVSMLSDTKFVQK-FININRERLRRLYV 66 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~--------------~~~~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ 66 (163)
||++| +||+++ ++++++.+... ....+++.+.|.++..+++.-. +. .+++.++.++++++
T Consensus 199 ~g~~G--~G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~ 273 (362)
T 2c0r_A 199 LGPSG--VTVVIV-REDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIE--ERGGLEGVQQANRKKAS 273 (362)
T ss_dssp TCCSS--CEEEEE-EGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHH
T ss_pred ccCcC--cEEEEE-cHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHH
Confidence 68888 999999 77776555331 1124678888888888886431 22 57889999999999
Q ss_pred HHHHHhhhcC-C-cccc---CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-C
Q 042816 67 KFVAGLRQLG-I-ECAK---SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-L 140 (163)
Q Consensus 67 ~l~~~l~~~g-~-~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~ 140 (163)
++.+.|+++| + ++.. ..++.++|+.++... ++.++++.|.+ +||.+.||..| .+++|||++. .
T Consensus 274 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~L~~-~gi~~~~g~~~----~~~iRis~~~~~ 342 (362)
T 2c0r_A 274 LIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEE------LEKEFVKASEQ-EGFVGLKGHRS----VGGLRASIYNAV 342 (362)
T ss_dssp HHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHH------HHHHHHHHHHH-TTEESCBCCTT----TCSEEEECCTTS
T ss_pred HHHHHHHHcCCccccCCChHHcCCcEEEEEcCCcc------hHHHHHHHHHH-CCCeeccCCCC----CCEEEEECCCCC
Confidence 9999999886 6 6532 234566888887532 67889988765 89999998766 3579999974 3
Q ss_pred ChhHHHHHHHHHHHHHHHh
Q 042816 141 TEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 141 ~~~~l~~~~~~l~~~~~~~ 159 (163)
+.++++.+++.|+++++++
T Consensus 343 ~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 343 PYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 6789999999999887754
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.8e-12 Score=93.93 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=106.5
Q ss_pred eeEEEEEecCHHHHHHH-------------HHhhc-----------cc-CCChHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 042816 7 FRISVIYSYNNSVLAAA-------------KKLAR-----------FS-SVSAPSQNLLVSMLSDTKFVQKFININRERL 61 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~-------------~~~~~-----------~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 61 (163)
.++||+++ ++++++.+ ..... .+ +++...+.++...++.-. +..+++.++.+
T Consensus 195 ~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~--~~~~~~~~~~~ 271 (384)
T 3zrp_A 195 AGLGLLLL-SPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIE--KEGIENRIKRH 271 (384)
T ss_dssp SSEEEEEE-CHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHH--HHCHHHHHHHH
T ss_pred CceEEEEE-CHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHH--hcCHHHHHHHH
Confidence 44999999 88888777 22221 12 456666666656665321 23378899999
Q ss_pred HHHHHHHHHHhhhcCCccccCC----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE
Q 042816 62 RRLYVKFVAGLRQLGIECAKSN----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF 137 (163)
Q Consensus 62 ~~~~~~l~~~l~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~ 137 (163)
+++++++.+.|+++|+++..+. ++.++|+.++. . +..++.+.|.+ +||.+.||..+.. +++||++
T Consensus 272 ~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~l~~-~gi~v~~g~~~~~---~~iRi~~ 340 (384)
T 3zrp_A 272 TMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKV-A------DPQKVLAGTVN-EGVEFAPGVHPAF---KYFRIGH 340 (384)
T ss_dssp HHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSS-S------CHHHHHHHHHT-TTCCCEECCCTTC---CEEEEEC
T ss_pred HHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCC-C------CHHHHHHHHHH-CCEEEecCCCCCc---CEEEEec
Confidence 9999999999999888888777 67788888886 2 67899998887 6999999875432 8999998
Q ss_pred ec-CChhHHHHHHHHHHHHHHHhh
Q 042816 138 TL-LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 138 ~~-~~~~~l~~~~~~l~~~~~~~~ 160 (163)
.. .++++++++++.|.+++++++
T Consensus 341 ~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 341 MGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHHHHcC
Confidence 63 378999999999999998765
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-13 Score=103.29 Aligned_cols=129 Identities=14% Similarity=0.111 Sum_probs=98.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHh--hcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKL--ARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
|+ +|+|+||+++ ++++++.+... ...++++++.|.++..+|+.. + +..+.++++++++.+.|++++...
T Consensus 243 ~~-~g~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~----~~~~~~~~~~~~l~~~L~~~~~~~ 313 (375)
T 2eh6_A 243 LG-GGVPIGAILA-REEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV---E----KLLPHVREVGNYFKEKLKELGKGK 313 (375)
T ss_dssp GG-TTSCCEEEEE-EHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHTTSSE
T ss_pred cc-CCCCeEEEEE-cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45 6899999999 78888777652 223567888888877776543 2 667788888999999998875444
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRI 155 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~ 155 (163)
.+ ..|+++|++++. +..++++.|.+ +||.+.|+ +++++||+++ ..+++++++++++|.++
T Consensus 314 ~~-~~g~~~~~~~~~--------~~~~~~~~l~~-~gi~~~~~------~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 314 VK-GRGLMLGLELER--------ECKDYVLKALE-KGLLINCT------AGKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp EE-EETTEEEEECSS--------CCHHHHHHHHH-TTEECEEE------TTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ce-EEEEEEEEEEcC--------cHHHHHHHHHH-CCCEEecC------CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 43 456788999874 35778888876 89999986 2689999986 35889999999999875
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.5e-13 Score=103.82 Aligned_cols=152 Identities=7% Similarity=0.035 Sum_probs=99.4
Q ss_pred CCCCc-eeEEEEEecCHHHHHHHHH---hh-----cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042816 2 LSLPG-FRISVIYSYNNSVLAAAKK---LA-----RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 2 ~~~~G-~RiG~~i~~~~~~~~~~~~---~~-----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
++. | +|+||+++ ++++++.+.. .. ..++.++++|.++...|+..+. ++..++.++..+..++.+.+.+
T Consensus 286 l~~-G~~~ig~~~~-~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~ 362 (452)
T 3n5m_A 286 ITS-AYLPLSATAV-KREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIEN-ENLIERSAQMGSLLLEQLKEEI 362 (452)
T ss_dssp GGT-TSSCCEEEEE-EHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccC-CCcceEEEEE-CHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHH
Confidence 455 8 99999999 9999988854 11 1357889999988888764321 2334444444444444444444
Q ss_pred hhc-CCccccCCceeEEEeecCCcccCC---ChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHH
Q 042816 73 RQL-GIECAKSNGGFYCWADMSGLISSY---SEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHV 147 (163)
Q Consensus 73 ~~~-g~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~ 147 (163)
.++ ++...++.|. ++++++....... ......++++.|++ +||.+.|+..|....++++||+++. ++++++++
T Consensus 363 ~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~ 440 (452)
T 3n5m_A 363 GEHPLVGDIRGKGL-LVGIELVNDKETKEPIDNDKIASVVNACKE-KGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAF 440 (452)
T ss_dssp TTCTTEEEEEESSS-CEEEEEEEETTTTEECCHHHHHHHHHHHHH-TTEECEECTTSSTTCCCEEEECCCTTCCHHHHHH
T ss_pred hcCCCeEEEEEEEE-EEEEEEecCCcccCCCCHHHHHHHHHHHHH-CCcEEeecCcccCCCCCEEEEECCCCCCHHHHHH
Confidence 444 3444555555 5566664211000 01123578888876 8999999988765557899997543 38899999
Q ss_pred HHHHHHHHHHH
Q 042816 148 VMERIRRISQT 158 (163)
Q Consensus 148 ~~~~l~~~~~~ 158 (163)
++++|.+++++
T Consensus 441 ~l~~l~~~l~~ 451 (452)
T 3n5m_A 441 VIGTLKTAMER 451 (452)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=99.52 Aligned_cols=140 Identities=12% Similarity=0.057 Sum_probs=97.8
Q ss_pred CCCCceeEEEEEecCHHH-HHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 2 LSLPGFRISVIYSYNNSV-LAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~-~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
|+. |+|+||+++ ++++ ++.+..... .++.++++|.++..+++.... +++.++.++..+..++.+.+.+..+ .+
T Consensus 250 ~~~-G~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 326 (395)
T 3nx3_A 250 LGC-GLSVGAFVI-NQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE-EKILENVNKLTPYLEQSLDELINEFDFC 326 (395)
T ss_dssp GTT-TSCCEEEEE-CHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred ccC-CCceEEEEE-chhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 454 899999999 8888 888765533 367899999988888764211 2334445554444555555555444 23
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
...++ .|.++|++++... +..++.+.|++ +||.+.|+. ++++||+++. .+++++++++++|.+++
T Consensus 327 ~~~~~-~g~~~~~~~~~~~------~~~~~~~~l~~-~Gi~v~~~~------~~~iRi~~~~~~t~e~i~~~l~~l~~~l 392 (395)
T 3nx3_A 327 KKRKG-LGFMQGLSLDKSV------KVAKVIQKCQE-NALLLISCG------ENDLRFLPPLILQKEHIDEMSEKLRKAL 392 (395)
T ss_dssp EEEEE-ETTEEEEEECTTS------CHHHHHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEe-EEEEEEEEeCCcc------hHHHHHHHHHH-CCCEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 33333 3567888887532 56788888876 899999863 6899998654 38899999999999987
Q ss_pred HH
Q 042816 157 QT 158 (163)
Q Consensus 157 ~~ 158 (163)
++
T Consensus 393 ~~ 394 (395)
T 3nx3_A 393 KS 394 (395)
T ss_dssp HT
T ss_pred Hh
Confidence 64
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-12 Score=96.86 Aligned_cols=144 Identities=15% Similarity=0.206 Sum_probs=106.2
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc----------------------c-cCCChHHHHHHH-HhcCChHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR----------------------F-SSVSAPSQNLLV-SMLSDTKFVQKFININ 57 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~----------------------~-~~~s~~~q~~~~-~~l~~~~~~~~~~~~~ 57 (163)
||.+| +||+++ ++++++.+..... + .+++.+.|.++. ..++.-. +.++++.
T Consensus 228 ~g~~G--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~ 302 (406)
T 1kmj_A 228 YGPTG--IGILYV-KEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVS--ALGLNNI 302 (406)
T ss_dssp TSCTT--CEEEEE-CHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH--HHCHHHH
T ss_pred cCCCC--cEEEEE-eHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHH--HcCHHHH
Confidence 67788 899999 8999888764431 1 235666666444 4443221 2356788
Q ss_pred HHHHHHHHHHHHHHhhhc-CCccccC--CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC------C
Q 042816 58 RERLRRLYVKFVAGLRQL-GIECAKS--NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------I 128 (163)
Q Consensus 58 ~~~~~~~~~~l~~~l~~~-g~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------~ 128 (163)
++.++++++++.+.|+++ |+++..| .++++.| .++.. +..++.+.|.+ +||.+.||..|.. .
T Consensus 303 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~g 373 (406)
T 1kmj_A 303 AEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAF-NLGKH-------HAYDVGSFLDN-YGIAVRTGHHCAMPLMAYYN 373 (406)
T ss_dssp HHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEE-EETTC-------CHHHHHHHHHH-TTEECEEECTTCHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEE-EECCC-------CHHHHHHHHhh-CCcEEEeccccchHHHHhcC
Confidence 899999999999999998 8888887 7887776 56531 56778877765 8999999986532 1
Q ss_pred CCceEEEEEecC-ChhHHHHHHHHHHHHHHHh
Q 042816 129 EPGWFSFSFTLL-TEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 129 ~~~~iRi~~~~~-~~~~l~~~~~~l~~~~~~~ 159 (163)
.++++||+++.. ++++++.+++.|.++++.+
T Consensus 374 ~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 374 VPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp CSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 268999999863 7889999999999988765
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.3e-13 Score=103.47 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=96.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE 78 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 78 (163)
|| +|+|+||+++ ++++++.+..... .+ .++++|.++..+++.... +++.++.++..+..++.+.+.+..+ .+.
T Consensus 272 ~~-~G~riG~~~~-~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 347 (439)
T 3dxv_A 272 LG-GGLPLSAVIA-PAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDR-DDLPAMAERKGRLLRDGLSELAKRHPLIG 347 (439)
T ss_dssp GG-TTSCCEEEEE-EHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred hc-CCcceEEEEE-CHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 56 5999999999 8999888776533 35 888888888887764321 2233333333333334444433334 234
Q ss_pred cccCCceeEEEeecCCcc--cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLI--SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
..++. |.++|+++.... ..+...+..++++.|++ +||.+.|+..+ ++++||+++. .+++++++++++|.++
T Consensus 348 ~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~~~~~~t~e~i~~~l~~l~~~ 421 (439)
T 3dxv_A 348 DIRGR-GLACGMELVCDRQSREPARAETAKLIYRAYQ-LGLVVYYVGMN----GNVLEFTPPLTITETDIHKALDLLDRA 421 (439)
T ss_dssp EEEEE-TTEEEEEEEEETTTTEECHHHHHHHHHHHHH-HTEECEEESTT----SCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEE-EEEEEEEEecCccccCCCHHHHHHHHHHHHH-CCcEEeecCCC----CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44444 556777762100 00111256788998887 79999997432 4799998654 3889999999999999
Q ss_pred HHHhhh
Q 042816 156 SQTCKS 161 (163)
Q Consensus 156 ~~~~~~ 161 (163)
++++.+
T Consensus 422 l~~~~~ 427 (439)
T 3dxv_A 422 FSELSA 427 (439)
T ss_dssp HHTGGG
T ss_pred HHHHhc
Confidence 987643
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.2e-12 Score=97.32 Aligned_cols=136 Identities=17% Similarity=0.146 Sum_probs=90.3
Q ss_pred CCCCCceeE-EEEEecCHHHHH-HHHHhhccc---CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 1 DLSLPGFRI-SVIYSYNNSVLA-AAKKLARFS---SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 1 ~~~~~G~Ri-G~~i~~~~~~~~-~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
.||+||+|+ ||+++ ++++++ .+......+ +++++.|.++...+++. +..+++.. ++.+.+.+.+++.
T Consensus 210 ~~~~~g~ri~G~~~~-~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~---~~~~~~~~----~~~~~l~~~l~~~ 281 (404)
T 1e5e_A 210 YINGHTDVVAGLICG-KADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTL---NIRMKAES----ENAMKVAEYLKSH 281 (404)
T ss_dssp TTTCSSCCCCEEEEE-CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTH---HHHHHHHH----HHHHHHHHHHHTC
T ss_pred ccCCCCCCeEEEEEE-CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHH---HHHHHHHH----HHHHHHHHHHHhC
Confidence 489999998 99999 888888 887776644 47888898888888864 22333322 3333333333332
Q ss_pred ---------------CCccccCC----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC---------
Q 042816 76 ---------------GIECAKSN----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC--------- 127 (163)
Q Consensus 76 ---------------g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~--------- 127 (163)
|+++.+|+ |+|+.| +++. . .+....++++.|| +.+|..|+.
T Consensus 282 ~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~--------~-~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~ 350 (404)
T 1e5e_A 282 PAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKS--------G-FEGAKKLLDNLKL-ITLAVSLGGCESLIQHPA 350 (404)
T ss_dssp TTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETT--------H-HHHHHHHHHTCSS-SEESSCCCSSSCEEECGG
T ss_pred CCeeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCC--------C-HHHHHHHHHhCCC-ceeccCCCCcceeeeccc
Confidence 33444444 888888 7763 2 2334446666899 666766652
Q ss_pred --------------CC--CceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 128 --------------IE--PGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 128 --------------~~--~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
.+ ++++|||++. |+++++++.|.++++.
T Consensus 351 ~~~~~~~~~~~~~~~g~~~~~iRis~g~---e~~~~li~~l~~al~~ 394 (404)
T 1e5e_A 351 SMTHAVVPKEEREAAGITDGMIRLSVGI---EDADELIADFKQGLDA 394 (404)
T ss_dssp GTTTTTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHHHHHHH
Confidence 12 6899999996 7788888888777654
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.2e-12 Score=95.17 Aligned_cols=141 Identities=9% Similarity=0.012 Sum_probs=101.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhh-------------c-ccCCChHHHHHHHHhcCChHHHHH-HHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLA-------------R-FSSVSAPSQNLLVSMLSDTKFVQK-FININRERLRRLYV 66 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~-------------~-~~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ 66 (163)
||++| +||+++ ++++++.+.... . ..+++...+.++..+++.-. +. .+++.++.++++++
T Consensus 198 ~~~~G--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~--~~~~~~~~~~~~~~~~~ 272 (360)
T 1w23_A 198 LGPSG--VTVVIV-KKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIK--DLGGAEAIAKQNEEKAK 272 (360)
T ss_dssp TSCTT--CEEEEE-EHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHH
T ss_pred cCCCC--cEEEEE-cHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHH
Confidence 67677 999999 888876554432 1 12445666666666664321 12 57888999999999
Q ss_pred HHHHHhhhcC-C-ccc-cC--CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-C
Q 042816 67 KFVAGLRQLG-I-ECA-KS--NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-L 140 (163)
Q Consensus 67 ~l~~~l~~~g-~-~~~-~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~ 140 (163)
++.+.|++++ + ... .| .+++++|++++.. .+..++.+.|.+ +||.+.||..+ ++++||+++. .
T Consensus 273 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~-~gi~~~~~~~~----~~~iRis~~~~~ 341 (360)
T 1w23_A 273 IIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNE------ELNQQFLAKAKE-QGFVGLNGHRS----VGGCRASIYNAV 341 (360)
T ss_dssp HHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSH------HHHHHHHHHHHH-TTEESCBCCTT----TCSEEEECCTTS
T ss_pred HHHHHHHHccCcccccCCchhccCcEEEEEcCCC------ccHHHHHHHHHH-CCeeeecCCCC----CCeEEEEecCCC
Confidence 9999999884 5 432 23 4577899998753 256788888765 89999998754 5789999984 3
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 042816 141 TEKDIHVVMERIRRISQT 158 (163)
Q Consensus 141 ~~~~l~~~~~~l~~~~~~ 158 (163)
++++++.+++.|.+++++
T Consensus 342 ~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 342 PIDACIALRELMIQFKEN 359 (360)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 788999999999887653
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-12 Score=99.92 Aligned_cols=146 Identities=10% Similarity=0.012 Sum_probs=103.0
Q ss_pred eeEEEEEecCHHHHHHHHHh-------hc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 7 FRISVIYSYNNSVLAAAKKL-------AR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~-------~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
+|+||+++ ++++++.+... .. .++.++++|.++..+|+.... +++.++.++..+..++.+.+.++++ +
T Consensus 297 ~~lg~v~~-~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~ 374 (460)
T 3gju_A 297 APLSGVIV-ADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDE-MDLVTNAGETGAYFRAELAKAVGGHKN 374 (460)
T ss_dssp SCCEEEEE-EHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred CCeEEEEE-CHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 89999999 99999998642 11 357899999988888874321 3456677777777777777777776 3
Q ss_pred CccccCCceeEEEeecCCccc-CC----ChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLIS-SY----SEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVME 150 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~-~~----~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~ 150 (163)
+...++.|. ++++++..... .. ......++++.|++ +||.+.|+. .++++||+.. .+++++++++++
T Consensus 375 ~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~-----~~~~iRi~~~~~~t~e~i~~~l~ 447 (460)
T 3gju_A 375 VGEVRGDGM-LAAVEFVADKDDRVFFDASQKIGPQVATALAA-SGVIGRAMP-----QGDILGFAPPLCLTREQADIVVS 447 (460)
T ss_dssp EEEEEEETT-EEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH-TTEECEECS-----SSCEEEECCCTTCCHHHHHHHHH
T ss_pred eEEEeeeeE-EEEEEEccCccccccccchHHHHHHHHHHHHH-CCeEEecCC-----CCCEEEEECCCCCCHHHHHHHHH
Confidence 555555554 56666653210 00 00125678888887 899999865 2589999954 248899999999
Q ss_pred HHHHHHHHhhh
Q 042816 151 RIRRISQTCKS 161 (163)
Q Consensus 151 ~l~~~~~~~~~ 161 (163)
+|.+++++...
T Consensus 448 ~l~~~l~~~~~ 458 (460)
T 3gju_A 448 KTADAVKSVFA 458 (460)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999987653
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.39 E-value=7.3e-13 Score=102.84 Aligned_cols=148 Identities=7% Similarity=0.014 Sum_probs=97.0
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE 78 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 78 (163)
++. |+|+||+++ ++++++.+..... .++.++++|.++..+|+.... +++.++.++..+..++.+.+.+..+ .+.
T Consensus 298 l~~-G~~iG~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 374 (451)
T 3oks_A 298 IAG-GLPLSAVTG-RAEIMDSPHVSGLGGTYGGNPIACAAALATIETIES-EGLVARAQQIEKIMKDRLGRLQAEDDRIG 374 (451)
T ss_dssp GGT-TSSCEEEEE-EHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred hhC-CcceEEEEE-CHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 444 899999999 8999888765444 367899999988888864311 2233444444444444444444444 233
Q ss_pred cccCCceeEEEeecCCc-ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGL-ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
..++. |.++|+++... ...+...+..++++.|++ +||.+.|+..|+ +++||+++. ++++++++++++|.+++
T Consensus 375 ~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~----~~iRi~~~~~~t~e~i~~~l~~l~~~l 448 (451)
T 3oks_A 375 DVRGR-GAMIAMELVKAGTTEPDADLTKALCAGAHA-AGVIVLSCGTYG----NVVRFLPPLSIGDDLLNEGLDVLEEVL 448 (451)
T ss_dssp EEEEE-TTEEEEEEBSTTSCCBCHHHHHHHHHHHHH-TTEECEEECTTS----CEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEe-eEEEEEEEecCccCCCCHHHHHHHHHHHHh-CCcEEecCCCCC----CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 33333 55777776321 001122356788888886 899999975543 689998764 38899999999999987
Q ss_pred HH
Q 042816 157 QT 158 (163)
Q Consensus 157 ~~ 158 (163)
++
T Consensus 449 ~~ 450 (451)
T 3oks_A 449 RG 450 (451)
T ss_dssp HC
T ss_pred hh
Confidence 64
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.2e-13 Score=102.60 Aligned_cols=133 Identities=8% Similarity=0.064 Sum_probs=97.2
Q ss_pred CCCCc-eeEEEEEecCHHHHHHHH-HhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 2 LSLPG-FRISVIYSYNNSVLAAAK-KLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 2 ~~~~G-~RiG~~i~~~~~~~~~~~-~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
|| +| +|+||+++ +++++ .+. .....++.|+++|.++..+|+.. ++ .++.++++++++.+.|+++ +..
T Consensus 283 ~~-~G~~riG~~~~-~~~~~-~~~~~~~~t~~~n~~~~~aa~aal~~~---~~----~~~~~~~~~~~l~~~L~~~-~~~ 351 (419)
T 2eo5_A 283 LG-GGIMPIGATIF-RKDLD-FKPGMHSNTFGGNALACAIGSKVIDIV---KD----LLPHVNEIGKIFAEELQGL-ADD 351 (419)
T ss_dssp GG-TTTSCCEEEEE-EGGGC-CC------CCCCCHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHTTS-SSE
T ss_pred cc-CCccceEEEEE-chHhh-cCCcccCCCCCCCHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHh-hhh
Confidence 56 48 99999999 77777 662 11223678999999998888643 22 7788888999999999876 444
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
.++.| .++|+++.... ..+. +++.|++ +||.+.|+. ++++||+++. .+++++++++++|.+++++
T Consensus 352 ~~~~g-~~~~i~~~~~~-----~~~~-~~~~l~~-~Gv~v~~~~------~~~lRis~~~~~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 352 VRGIG-LAWGLEYNEKK-----VRDR-IIGESFK-RGLLLLPAG------RSAIRVIPPLVISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp EEEET-TEEEEECSCHH-----HHHH-HHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEeee-EEEEEEEecCc-----cHHH-HHHHHHH-CCCEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 45554 56677884210 1345 8888875 899999863 5799998752 4889999999999998876
Q ss_pred h
Q 042816 159 C 159 (163)
Q Consensus 159 ~ 159 (163)
+
T Consensus 418 ~ 418 (419)
T 2eo5_A 418 V 418 (419)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=100.96 Aligned_cols=150 Identities=11% Similarity=0.044 Sum_probs=94.5
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhh-----cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLA-----RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~-----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
|| +|+|+||+++ ++++++.+.... ..++.++++|.++...++.... +++.++.++..+..++.+.+.+..++
T Consensus 272 ~~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~ 348 (434)
T 3l44_A 272 IG-GGLPIGAYGG-KKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-EGLYEKLDELGATLEKGILEQAAKHN 348 (434)
T ss_dssp GG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hc-CCcCeeeEEE-cHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55 7999999999 999998887632 1367888999887777652110 12233333333333334444444444
Q ss_pred CccccCCceeEEEeecCCcc-c------CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLI-S------SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVM 149 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~-~------~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~ 149 (163)
+....+..|.++++++.... . .+......++++.|++ +||.+.|+. .+++|+++.. +++++++++
T Consensus 349 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~rl~~~~-t~e~i~~~l 420 (434)
T 3l44_A 349 IDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQ-EGVNLAPSK------YEAWFLTTEH-TKEDIEYTI 420 (434)
T ss_dssp CCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHH-TTEECCSST------TCCEECCTTC-CHHHHHHHH
T ss_pred CCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHH-CCeEEeecC------CCcEEEeccc-CHHHHHHHH
Confidence 33223334455666663210 0 0111234678888876 899999863 3568998665 999999999
Q ss_pred HHHHHHHHHhhhc
Q 042816 150 ERIRRISQTCKSH 162 (163)
Q Consensus 150 ~~l~~~~~~~~~~ 162 (163)
++|.+++++++.+
T Consensus 421 ~~l~~~l~~~~~~ 433 (434)
T 3l44_A 421 EAVGRAFAALADN 433 (434)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887653
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-13 Score=104.83 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=98.5
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL--GI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g~ 77 (163)
|+ +|+|+||+++ +++++ .+..... .++.+++.|.++..+|+.. ++ ++.++.++++++++.+.|++. ++
T Consensus 254 ~~-~G~r~G~~~~-~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~--~~~~~~~~~~~~~l~~~L~~~~~~~ 325 (397)
T 2ord_A 254 LG-GGVPIGAVIV-NERAN-VLEPGDHGTTFGGNPLACRAGVTVIKEL---TK--EGFLEEVEEKGNYLMKKLQEMKEEY 325 (397)
T ss_dssp GG-TTSCCEEEEE-CSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHH---TS--TTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cC-CCcCeEEEEE-chHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56 7999999999 66665 5543222 3567889998888877542 22 456778888888888888775 34
Q ss_pred cc---ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHH
Q 042816 78 EC---AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIR 153 (163)
Q Consensus 78 ~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~ 153 (163)
.. .++ .|.++|++++... +..++++.|.+ +||.+.||. ++++||+++ ..+++++++++++|.
T Consensus 326 ~~~~~~~~-~g~~~~~~~~~~~------~~~~l~~~l~~-~gi~v~~~~------~~~iRis~~~~~~~e~i~~~~~~l~ 391 (397)
T 2ord_A 326 DVVADVRG-MGLMIGIQFREEV------SNREVATKCFE-NKLLVVPAG------NNTIRFLPPLTVEYGEIDLAVETLK 391 (397)
T ss_dssp TTEEEEEE-ETTEEEEEECTTS------CHHHHHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CceEEEEE-EeEEEEEEECChH------HHHHHHHHHHH-CCCEEccCC------CCEEEEECCcCCCHHHHHHHHHHHH
Confidence 43 233 3567788887532 57889998887 899999872 579999965 248899999999999
Q ss_pred HHHHH
Q 042816 154 RISQT 158 (163)
Q Consensus 154 ~~~~~ 158 (163)
+++++
T Consensus 392 ~~l~~ 396 (397)
T 2ord_A 392 KVLQG 396 (397)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 88764
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=99.22 Aligned_cols=136 Identities=9% Similarity=0.016 Sum_probs=97.3
Q ss_pred Cc-eeEEEEEecCHHHHHHHHHh------h-cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 042816 5 PG-FRISVIYSYNNSVLAAAKKL------A-RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL- 75 (163)
Q Consensus 5 ~G-~RiG~~i~~~~~~~~~~~~~------~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 75 (163)
+| +|+||+++ ++++++.+... . ..++.|+++|.++..+++.- .+ +...+.++++++++.+.|+++
T Consensus 278 ~G~~~iG~~~~-~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~ 351 (429)
T 1s0a_A 278 GGTMTLSATLT-TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIL---ES--GDWQQQVADIEVQLREQLAPAR 351 (429)
T ss_dssp TSSSCCEEEEE-CHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHH---HT--CHHHHHHHHHHHHHHHHHGGGG
T ss_pred CCCccceEEEe-CHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHHh
Confidence 47 99999999 89999988763 1 13567899998887777532 11 123455556677777777664
Q ss_pred ---CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHH
Q 042816 76 ---GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMER 151 (163)
Q Consensus 76 ---g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~ 151 (163)
++...++.| .++|++++... +..++.+.|++ +||.+.|+ .+++||+++ ..+++++++++++
T Consensus 352 ~~~~~~~~~~~g-~~~~~~~~~~~------~~~~l~~~l~~-~Gi~v~~~-------~~~iRis~~~~~t~e~i~~~~~~ 416 (429)
T 1s0a_A 352 DAEMVADVRVLG-AIGVVETTHPV------NMAALQKFFVE-QGVWIRPF-------GKLIYLMPPYIILPQQLQRLTAA 416 (429)
T ss_dssp GCTTEEEEEEET-TEEEEEESSCB------CHHHHHHHHHH-TTEECCCB-------TTEEEECCCTTCCHHHHHHHHHH
T ss_pred cCCCEEEEEEee-EEEEEEECCcc------cHHHHHHHHHH-CCCEEecc-------CCEEEEECCCCCCHHHHHHHHHH
Confidence 333344554 57888987532 56788888886 89999883 268999965 2488999999999
Q ss_pred HHHHHHHhhh
Q 042816 152 IRRISQTCKS 161 (163)
Q Consensus 152 l~~~~~~~~~ 161 (163)
|.+++++++.
T Consensus 417 l~~~~~~~~~ 426 (429)
T 1s0a_A 417 VNRAVQDETF 426 (429)
T ss_dssp HHHHTSSGGG
T ss_pred HHHHHHhhhc
Confidence 9998876654
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.1e-13 Score=100.45 Aligned_cols=134 Identities=16% Similarity=0.120 Sum_probs=99.2
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
|+. |+|+||+++ ++++++.+..... .++++++.|.++..+++.. ++ +...+.++++++++.+.|++.+..+
T Consensus 256 ~~~-g~~~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~---~~--~~~~~~~~~~~~~l~~~l~~~~~~~ 328 (395)
T 1vef_A 256 LGG-GVPLGVAVM-REEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYL---ER--TRLWERAAELGPWFMEKLRAIPSPK 328 (395)
T ss_dssp GGT-TSSCEEEEE-EHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHH---HH--HTTHHHHHHHHHHHHHHHHTSCCTT
T ss_pred ccC-CCceEEEEe-hHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHhhcCc
Confidence 555 899999999 7888777655222 3567888888887777643 22 4567788888899999998875432
Q ss_pred --ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHHH
Q 042816 80 --AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 80 --~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~ 156 (163)
..+..|.++|++++. +..++++.|++++||.+.|+ +++++||+++ ..+++++++++++|.+++
T Consensus 329 ~~~~~~~g~~~~~~~~~--------~~~~l~~~l~~~~gi~v~~~------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 329 IREVRGMGLMVGLELKE--------KAAPYIARLEKEHRVLALQA------GPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp EEEEEEETTEEEEEESS--------CSHHHHHHHHHHHCEECEES------STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEEEEEEEcC--------hHHHHHHHHHHHCCeEEecC------CCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 123456788988874 34778888883489999986 2689999876 248899999999998875
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-12 Score=97.90 Aligned_cols=142 Identities=11% Similarity=0.081 Sum_probs=103.5
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG--- 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g--- 76 (163)
|+ +|+|+||+++ ++++++.+..... .++.+++.|.++...++... . ++.++.++++++++.+.|++.+
T Consensus 254 ~~-~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~--~~~~~~~~~~~~~l~~~l~~~~~~~ 326 (406)
T 4adb_A 254 LG-GGFPVGALLA-TEECARVMTVGTHGTTYGGNPLASAVAGKVLELIN---T--PEMLNGVKQRHDWFVERLNTINHRY 326 (406)
T ss_dssp GG-TTSCCEEEEE-CHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHS---S--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc-CCCCeEEEEE-cHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH---h--cCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56 8999999999 9999888876544 36788999998887775421 1 4566667777777777776652
Q ss_pred -CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 77 -IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 77 -~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
.....+..|.++|+.++... ..+..++++.|.+ +||.+.|+. ++++|++++. .+++++++++++|.+
T Consensus 327 ~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~l~~-~gi~v~~~~------~~~iRi~~~~~~~~e~i~~~~~~l~~ 395 (406)
T 4adb_A 327 GLFSEVRGLGLLIGCVLNADY----AGQAKQISQEAAK-AGVMVLIAG------GNVVRFAPALNVSEEEVTTGLDRFAA 395 (406)
T ss_dssp CCEEEEEEETTEEEEEECTTT----TTCHHHHHHHHHH-TTEECEESS------TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEEEEeCCc----HHHHHHHHHHHHH-CCcEEeecC------CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 11122334778888887521 0146889998887 799999853 6899996443 388999999999999
Q ss_pred HHHHhhh
Q 042816 155 ISQTCKS 161 (163)
Q Consensus 155 ~~~~~~~ 161 (163)
+++++..
T Consensus 396 ~l~~~~~ 402 (406)
T 4adb_A 396 ACEHFVS 402 (406)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9987754
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=8.8e-13 Score=99.71 Aligned_cols=137 Identities=15% Similarity=0.219 Sum_probs=99.8
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhh----------------------c--ccCCChHHHHHHHHhcCChHHHHHHHHHHH
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLA----------------------R--FSSVSAPSQNLLVSMLSDTKFVQKFININR 58 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~----------------------~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 58 (163)
..+|.++||+++ ++++++.+.... . ..+++.+.|.++..+++.-.. ..++++.+
T Consensus 222 ~~~~~g~G~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~-~~~~~~~~ 299 (390)
T 1elu_A 222 FAGPAGVGGLYI-HGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQR-QGTAEERY 299 (390)
T ss_dssp TCCCTTCEEEEE-CTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHH-HCCHHHHH
T ss_pred ccCCCceEEEEE-CHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHH-cCCHHHHH
Confidence 455677999999 788877665421 1 234566777766665543211 23478889
Q ss_pred HHHHHHHHHHHHHhhhc-CCccc---cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEE
Q 042816 59 ERLRRLYVKFVAGLRQL-GIECA---KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFS 134 (163)
Q Consensus 59 ~~~~~~~~~l~~~l~~~-g~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iR 134 (163)
+.++++++++.+.|+++ |+++. ++.++++.| +++... +..++.+.|.+ +||.+.||. .++++|
T Consensus 300 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~l~~-~gi~v~~~~-----~~~~iR 366 (390)
T 1elu_A 300 QAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSF-TVDSPL------GHRAIVQKLEE-QRIYLRTIA-----DPDCIR 366 (390)
T ss_dssp HHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEE-EECSSS------CHHHHHHHHHH-TTEECEEET-----TTTEEE
T ss_pred HHHHHHHHHHHHHHHhcCCcEEecCccccccEEEE-EcCCCC------CHHHHHHHHHH-CCEEEEecC-----CCCeEE
Confidence 99999999999999998 88777 346787766 876432 57889998865 899999986 268999
Q ss_pred EEEe-cCChhHHHHHHHHHHH
Q 042816 135 FSFT-LLTEKDIHVVMERIRR 154 (163)
Q Consensus 135 i~~~-~~~~~~l~~~~~~l~~ 154 (163)
|++. ..+++++++++++|.+
T Consensus 367 is~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 367 ACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp EECCTTCCHHHHHHHHHHHTT
T ss_pred EecccCCCHHHHHHHHHHHHh
Confidence 9984 2488999999888864
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.36 E-value=8.6e-12 Score=95.13 Aligned_cols=146 Identities=13% Similarity=0.189 Sum_probs=105.3
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc----------------------cCCChHHHHHHHH-hcCChHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF----------------------SSVSAPSQNLLVS-MLSDTKFVQKFININR 58 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~----------------------~~~s~~~q~~~~~-~l~~~~~~~~~~~~~~ 58 (163)
+|.+| +||+++ ++++++.+...... .+++.+.|.++.. .++.-. +..+++.+
T Consensus 233 ~~~~g--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~ 307 (420)
T 1t3i_A 233 CAPTG--IGFLYG-KEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT--DLGMENIH 307 (420)
T ss_dssp TSCTT--CEEEEE-CHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH--HHCHHHHH
T ss_pred cCCCc--eEEEEE-chHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH--HhHHHHHH
Confidence 67778 999999 89998887654321 2456666665433 343211 12467888
Q ss_pred HHHHHHHHHHHHHhhhc-CCccccCC------ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC---
Q 042816 59 ERLRRLYVKFVAGLRQL-GIECAKSN------GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI--- 128 (163)
Q Consensus 59 ~~~~~~~~~l~~~l~~~-g~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~--- 128 (163)
+.++++++++.+.|+++ |+++..|. ++++.| .++.. +..++.+.|.+ +||.+.||..|..+
T Consensus 308 ~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~l~~-~gi~v~~~~~~~~~~~~ 378 (420)
T 1t3i_A 308 NYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASF-NVAGL-------HASDVATMVDQ-DGIAIRSGHHCTQPLHR 378 (420)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEE-EETTB-------CHHHHHHHHHT-TTEECBCSCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEE-EECCC-------CHHHHHHHHHH-CCeEEeeccccchHHHH
Confidence 99999999999999998 88887664 666655 67641 56778877755 89999999765321
Q ss_pred --C-CceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 129 --E-PGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 129 --~-~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
+ ++++||+++. .++++++.+++.|.++++.+++
T Consensus 379 ~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 379 LFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp HTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred hcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 2 6799999985 3888999999999999887654
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-11 Score=92.16 Aligned_cols=140 Identities=12% Similarity=0.089 Sum_probs=101.4
Q ss_pred CCCceeEEEEEecCHHHHH-HHH----------------------Hhhc-----ccCCChHHHHHHHHhcCChHHHHHH-
Q 042816 3 SLPGFRISVIYSYNNSVLA-AAK----------------------KLAR-----FSSVSAPSQNLLVSMLSDTKFVQKF- 53 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~-~~~----------------------~~~~-----~~~~s~~~q~~~~~~l~~~~~~~~~- 53 (163)
|.+|+ ||+++ ++++++ .+. .... ..+++.+.+.++..+++.- .+.
T Consensus 205 ~~~G~--G~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~~ 278 (385)
T 2bkw_A 205 APAGL--SISLC-SSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEI---LEEG 278 (385)
T ss_dssp CCSCE--EEEEE-CHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH---HHHC
T ss_pred cCCcc--eEEEE-cHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHH---HHcc
Confidence 35665 99999 887766 431 1111 1246666777666666542 233
Q ss_pred HHHHHHHHHHHHHHHHHHh-hhcCCccccC-----CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC
Q 042816 54 ININRERLRRLYVKFVAGL-RQLGIECAKS-----NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC 127 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~ 127 (163)
+++.++.++++++++.+.| +++|+++..+ ..+.++|++++. ..++.+.|.+ +||.+.||..+..
T Consensus 279 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~-~gi~v~~g~~~~~ 348 (385)
T 2bkw_A 279 LHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD---------PPDVIAFLKS-HGVVIAGGIHKDI 348 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC---------HHHHHHHHHH-TTEECBCCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccCCceEEEecCC---------HHHHHHHHHH-CCeEEeCCCCccc
Confidence 6788889999999999999 8778777653 257788988873 4678888875 8999999987542
Q ss_pred CCCceEEEE-Ee----cCChhHHHHHHHHHHHHHHHh
Q 042816 128 IEPGWFSFS-FT----LLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 128 ~~~~~iRi~-~~----~~~~~~l~~~~~~l~~~~~~~ 159 (163)
.++++||+ ++ ..+++++++++++|.++++++
T Consensus 349 -~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~~ 384 (385)
T 2bkw_A 349 -GPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQRK 384 (385)
T ss_dssp -GGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred -CCCEEEEEccccccccCCHHHHHHHHHHHHHHHHhc
Confidence 36899999 76 247899999999999887654
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-11 Score=92.31 Aligned_cols=133 Identities=8% Similarity=-0.074 Sum_probs=93.6
Q ss_pred EEEEecCHHHHHHHHHhhccc----CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc-ccCC
Q 042816 10 SVIYSYNNSVLAAAKKLARFS----SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC-AKSN 83 (163)
Q Consensus 10 G~~i~~~~~~~~~~~~~~~~~----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~-~~~~ 83 (163)
||+++ ++++++.+....... ....+.+.++...|+ .+.++.+ .+.++++++.+.|+++ |+++ ..|.
T Consensus 214 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~-~~~~~~~~l~~~L~~~~g~~~~~~~~ 285 (357)
T 3lws_A 214 AILAG-PAAFCQTARIWKRRYGGDLISLYPYIVSADYYYE------LRKDRMG-QYYEQAKQLAEQFNALPGVHTTPEVP 285 (357)
T ss_dssp EEEEE-CHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHH------HHTTCHH-HHHHHHHHHHHHHHTSTTEEEESSSC
T ss_pred EEEEc-CHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHH------HHHHHHH-HHHHHHHHHHHHHHhCCCCeeccCCC
Confidence 99999 999999988765432 223333433333332 2333433 3577888999999998 8888 4577
Q ss_pred ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec----CChhHHHHHHHHHHHHH
Q 042816 84 GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL----LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~----~~~~~l~~~~~~l~~~~ 156 (163)
+++|+|++++... ..+..++.+.|.+ +||.+.||..|. ++..++|++++. .+.+++++++++|.+++
T Consensus 286 ~~~~~~~~~~~~~----~~~~~~~~~~l~~-~Gi~v~~g~~~~-~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 286 VSNMFHLHFDGQA----ADISPKLEQVQEE-TGLGFVGYLVDK-DGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp SSSEEEEEEESCH----HHHHHHHHHHHHH-HCEESCSCCEEC-SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred cceEEEEEecCCh----HHHHHHHHHHHHh-cCeEEecccccC-CCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 8889999997531 0135677777765 899999997665 345699999873 37789999999998764
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.9e-12 Score=95.90 Aligned_cols=146 Identities=17% Similarity=0.135 Sum_probs=102.5
Q ss_pred CCCCceeEEEEEecCHHH-HHHHHH------hhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 2 LSLPGFRISVIYSYNNSV-LAAAKK------LARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~-~~~~~~------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+|.+| +||+++ +++. +..... .....+++.+.+.++..+++.. .+.+++.++.++++++++.+.|++
T Consensus 201 ~g~~g--~G~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~~~~~~~~~~~~~~~l~~~L~~ 274 (382)
T 4eb5_A 201 YGPKG--VGALWI-RKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEIT---AMEWREEAERLRRLRDRIIDNVLK 274 (382)
T ss_dssp TCCSS--CEEEEE-ETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCc--eEEEEE-ccccccCceecCCCccccccCCCccHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHhh
Confidence 45556 699999 4442 111100 0112345666666666666532 345788999999999999999998
Q ss_pred c-CCccccCCc---eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-----------------CCceE
Q 042816 75 L-GIECAKSNG---GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-----------------EPGWF 133 (163)
Q Consensus 75 ~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-----------------~~~~i 133 (163)
+ |+++..+.+ +.++|+.++. . +..++.+.|.+ +||.+.||..|... .++++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~i 346 (382)
T 4eb5_A 275 IEESYLNGHPEKRLPNNVNVRFSY-I------EGESIVLSLDM-AGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTL 346 (382)
T ss_dssp STTEEECSCSSSBCTTEEEEEETT-S------CHHHHHHHHHH-HTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEE
T ss_pred CCCeEEeCCcccCCCCEEEEEeCC-c------CHHHHHHHHHH-CCEEEeccccccCCCCcccHHHHHcCCChhccCCeE
Confidence 8 877776642 4457777763 2 56789988875 89999999865431 25799
Q ss_pred EEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 134 SFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 134 Ri~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
||+++. .+++++++++++|.++++++++
T Consensus 347 Ri~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 347 LLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999983 3789999999999999988775
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-12 Score=98.85 Aligned_cols=139 Identities=14% Similarity=0.127 Sum_probs=96.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHh--hcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--C-
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKL--ARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL--G- 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g- 76 (163)
+| +|+|+||+++ ++++++.+... ...++.|++.|.++...|+.-. + +...+.++++.+++.+.|++. +
T Consensus 272 l~-~G~~iG~~~~-~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~---~--~~~~~~~~~~~~~l~~~L~~~~~~~ 344 (420)
T 2pb2_A 272 LG-GGFPVSAMLT-TQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIIN---T--PEVLQGIHTKRQQFVQHLQAIDEQF 344 (420)
T ss_dssp GG-TTSCCEEEEE-CHHHHTTCC----CCEECCCHHHHHHHHHHHHHHS---S--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-CCCceEEEEE-hHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56 7999999999 88887766542 2235788999988877765321 1 244556666677777766654 2
Q ss_pred --CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHH
Q 042816 77 --IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIR 153 (163)
Q Consensus 77 --~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~ 153 (163)
+...++. |.++|++++.... .+..++++.|++ +||.+.|+. ++++||+++ ..+++++++++++|.
T Consensus 345 ~~~~~~~~~-g~~~~v~~~~~~~----~~~~~l~~~l~~-~Gi~v~~~~------~~~iRl~~~~~~t~eei~~~~~~l~ 412 (420)
T 2pb2_A 345 DIFSDIRGM-GLLIGAELKPKYK----GRARDFLYAGAE-AGVMVLNAG------ADVMRFAPSLVVEEADIHEGMQRFA 412 (420)
T ss_dssp CCEEEEEEE-TTEEEEEECGGGT----TCHHHHHHHHHH-TTEECEESS------TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEec-ceEEEEEECCCch----HHHHHHHHHHHH-CCCEEEeCC------CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 2223444 5667888864210 146789998887 899999863 579999965 248899999999999
Q ss_pred HHHHHh
Q 042816 154 RISQTC 159 (163)
Q Consensus 154 ~~~~~~ 159 (163)
++++++
T Consensus 413 ~~l~~~ 418 (420)
T 2pb2_A 413 QAVGKV 418 (420)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=99.18 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=100.0
Q ss_pred eeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---Ccccc
Q 042816 7 FRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG---IECAK 81 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g---~~~~~ 81 (163)
+|+||+++ ++++++.+..... .++.+++.|.++..+++.. +. ++.++.++++++++.+.|++++ +...+
T Consensus 258 ~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 331 (392)
T 3ruy_A 258 FPISCAAA-NRDILGVFEPGSHGSTFGGNPLACAVSIAALEVL---EE--EKLTERSLQLGEKLVGQLKEIDNPMITEVR 331 (392)
T ss_dssp SCCEEEEE-CHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHTTCCCTTEEEEE
T ss_pred hhhEEEEE-CHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHH---Hh--hhHHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 99999999 8998887766554 3678999999998888753 22 6788889999999999998874 44455
Q ss_pred CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 82 SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
+.|+++.| .++. +..++.+.|.+ +||.+.||. ++++|+++.. .+++++++++++|.+++
T Consensus 332 ~~g~~~~~-~~~~--------~~~~l~~~l~~-~gi~v~~~~------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 332 GKGLFIGI-ELNE--------PARPYCEQLKA-AGLLCKETH------ENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp EETTEEEE-EESS--------CSHHHHHHHHT-TTEECCCBT------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred eeeeEEEE-EEcc--------hHHHHHHHHHH-CCcEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 66665555 5764 35788888875 899999864 6899999543 38899999999998875
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-11 Score=94.85 Aligned_cols=141 Identities=16% Similarity=0.115 Sum_probs=104.3
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc----cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF----SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
||++ .||+++ ++++++.+...... .+.+.+.+.++...++.. +. .++.++.++++++++.+.|++.|+
T Consensus 258 ~~~~---gg~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~---~~-~~~~~~~~~~~~~~l~~~L~~~g~ 329 (409)
T 3kki_A 258 FAYR---AGAIWC-NNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEII---ES-ADNRRQHLDRMARKLRIGLSQLGL 329 (409)
T ss_dssp TCSS---CEEEEE-SSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHH---HH-CHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCC---ceEEEE-CHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHH---hc-CHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5555 499999 88888877765442 234555555555555532 22 267888999999999999999887
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-CCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH-CIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~-~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
++. ..+.++|+.++.. .++.++++.|++ +||.+.|+..+. ..+++++||+++. .+++++++++++|.++
T Consensus 330 ~~~--~~~~~~~~~~~~~------~~~~~~~~~L~~-~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~ 400 (409)
T 3kki_A 330 TIR--SESQIIGLETGDE------RNTEKVRDYLES-NGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDA 400 (409)
T ss_dssp CCC--CSSSEEEEEEESH------HHHHHHHHHHHH-TTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred ccC--CCCCEEEEEeCCH------HHHHHHHHHHHH-CCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 766 3677888888753 256789998887 699998865442 2347899999973 4889999999999999
Q ss_pred HHHh
Q 042816 156 SQTC 159 (163)
Q Consensus 156 ~~~~ 159 (163)
+++.
T Consensus 401 l~~~ 404 (409)
T 3kki_A 401 VNYG 404 (409)
T ss_dssp HHHS
T ss_pred HhcC
Confidence 8764
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-11 Score=90.80 Aligned_cols=139 Identities=13% Similarity=0.023 Sum_probs=102.7
Q ss_pred CC-CCceeEEEEEecCHHHHHHHHHhhc-----------------------ccCCChHHHHHHHHhcCChHHHHHHHHHH
Q 042816 2 LS-LPGFRISVIYSYNNSVLAAAKKLAR-----------------------FSSVSAPSQNLLVSMLSDTKFVQKFININ 57 (163)
Q Consensus 2 ~~-~~G~RiG~~i~~~~~~~~~~~~~~~-----------------------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 57 (163)
|+ .+|+ |++++ ++++++.+..... ..+++...+.++..+++.-. +..+++.
T Consensus 193 ~~~~~G~--g~~~~-~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~--~~~~~~~ 267 (362)
T 3ffr_A 193 FGLPAGL--GVWIL-NDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDML--QISADGI 267 (362)
T ss_dssp TCCCSCC--EEEEE-EHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHH--HHCHHHH
T ss_pred cCCCCce--EEEEE-CHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHH--HccHHHH
Confidence 45 6774 77888 8888888776543 34567777777766665321 1226788
Q ss_pred HHHHHHHHHHHHHHhhhc-CCccccC----CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCce
Q 042816 58 RERLRRLYVKFVAGLRQL-GIECAKS----NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGW 132 (163)
Q Consensus 58 ~~~~~~~~~~l~~~l~~~-g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~ 132 (163)
++.++++++++.+.|+++ |+++..+ .++.++|+.++. +..++.+.|.+ +||.+.||..+. .+++
T Consensus 268 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~-~gi~~~~g~~~~--~~~~ 336 (362)
T 3ffr_A 268 RKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM--------LPGEINKILEP-FDMAVGAGYGSK--KETQ 336 (362)
T ss_dssp HHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS--------CHHHHHHHHGG-GTEEEEECSGGG--TTTE
T ss_pred HHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC--------CHHHHHHHHHH-CCeEEecCcccc--CCCE
Confidence 889999999999999998 8877652 356778888874 46889998887 699999985543 3689
Q ss_pred EEEEEec-CChhHHHHHHHHHHHHH
Q 042816 133 FSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 133 iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
+||++.. .++++++.+++.|.+++
T Consensus 337 iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 337 IRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh
Confidence 9999974 37788888888887653
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-11 Score=90.61 Aligned_cols=139 Identities=10% Similarity=0.010 Sum_probs=95.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhccc--CC--ChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFS--SV--SAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~--~~--s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
++.|+ . ||++. ++++++.+....... ++ ..+.+.++...+ +.+.++. +.+.++++.+.+.|+++ |
T Consensus 210 ~~~~~-g-g~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l------~~~~~~~-~~~~~~~~~l~~~L~~~~g 279 (359)
T 3pj0_A 210 IGGIA-G-AILAG-NDDFVQEAKIWKRRYGGDLISLYPYILSADYYF------EKRIGKM-AEYFEAAKGLAERFNSCSG 279 (359)
T ss_dssp TCCSS-C-EEEEE-CHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH------HHHGGGH-HHHHHHHHHHHHHHHTSTT
T ss_pred CCCcc-e-EEEEC-CHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH------HHHHHHh-HHHHHHHHHHHHHHhhCCC
Confidence 45552 2 88888 999999998765421 22 233333333332 2333333 34678888999999998 8
Q ss_pred Cccc-cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec----CChhHHHHHHHH
Q 042816 77 IECA-KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL----LTEKDIHVVMER 151 (163)
Q Consensus 77 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~----~~~~~l~~~~~~ 151 (163)
+++. .|.++.++|++++... ..+..++.+.|.+ +||.+.||..|+..+.+++|++++. .+.+++++++++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~l~~-~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~ 354 (359)
T 3pj0_A 280 VKTVPEVPVSNMFHVYFENSA----DEIGAILTKIQDE-TGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRC 354 (359)
T ss_dssp EEEESSSCSSSEEEEEESSCH----HHHHHHHHHHHHH-HCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHH
T ss_pred ceeeccCCcceEEEEEecCcc----chhHHHHHHHHHh-cCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHH
Confidence 8885 5677778888876421 0146678877765 8999999988876567899999973 378889999999
Q ss_pred HHHH
Q 042816 152 IRRI 155 (163)
Q Consensus 152 l~~~ 155 (163)
|.+.
T Consensus 355 l~~~ 358 (359)
T 3pj0_A 355 LEKE 358 (359)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-11 Score=92.08 Aligned_cols=148 Identities=8% Similarity=-0.017 Sum_probs=100.2
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhccc---CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARFS---SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
++|.|+||++++++++.+.+....... +++...+.++...+... ..++++..++.+.++.+++.+.|++.|+++.
T Consensus 237 l~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 314 (425)
T 3ecd_A 237 LRGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEA--LTDDFKTYIDRVLANAQALGDVLKAGGVDLV 314 (425)
T ss_dssp GCCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHTTCEEG
T ss_pred cCCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHhCCCeec
Confidence 478999999994477888777655432 33444444333333221 1245678888899999999999998888877
Q ss_pred cC-CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc----CCCCCCCCCCceEEEEEec-----CChhHHHHHHH
Q 042816 81 KS-NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT----PGSSCHCIEPGWFSFSFTL-----LTEKDIHVVME 150 (163)
Q Consensus 81 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----pg~~f~~~~~~~iRi~~~~-----~~~~~l~~~~~ 150 (163)
.+ .+++++|++++... .+...+.+.|. ++||.+. ||..+....++++|+++.. .++++++++++
T Consensus 315 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~-~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~ 388 (425)
T 3ecd_A 315 TGGTDNHLLLVDLRPKG-----LKGAQVEQALE-RAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGR 388 (425)
T ss_dssp GGSCSSSEEEEECGGGT-----CCHHHHHHHHH-HTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHH
T ss_pred cCCCCceEEEEEeCCCC-----CCHHHHHHHHH-HcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHH
Confidence 54 46788898886421 14566666664 4899999 5543333335789998543 23688999999
Q ss_pred HHHHHHHHh
Q 042816 151 RIRRISQTC 159 (163)
Q Consensus 151 ~l~~~~~~~ 159 (163)
.|.+++++.
T Consensus 389 ~l~~~l~~~ 397 (425)
T 3ecd_A 389 LILEVFEAL 397 (425)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 998888764
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=93.25 Aligned_cols=136 Identities=8% Similarity=-0.051 Sum_probs=96.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhccc-------------CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFS-------------SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKF 68 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~-------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 68 (163)
+..+|+|+||+++.++.+.+.+.....++ +.+.+.|.++...+. ...+++..+.+.++++++
T Consensus 247 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~l 321 (397)
T 3f9t_A 247 MGHCPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG-----REGQRKIVNECMENTLYL 321 (397)
T ss_dssp TTCCCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHH
Confidence 45678899999995555655543322221 123455666655553 244567777788899999
Q ss_pred HHHhhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHH
Q 042816 69 VAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHV 147 (163)
Q Consensus 69 ~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~ 147 (163)
.+.|+++|+++..+..+.++|++++ +..++.+.|.+ +||.+.||.. ++++||+++. .+++++++
T Consensus 322 ~~~L~~~g~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~-~gi~v~~~~~-----~~~~Ri~~~~~~~~e~i~~ 386 (397)
T 3f9t_A 322 YKKLKENNFKPVIEPILNIVAIEDE---------DYKEVCKKLRD-RGIYVSVCNC-----VKALRIVVMPHIKREHIDN 386 (397)
T ss_dssp HHHHHHTTCCBSSCCSSSEEEEECT---------THHHHHHHHHH-TTCBCEECSS-----SSEEEEECCTTCCHHHHHH
T ss_pred HHHHHHCCCEEEcCCCccEEEEEeC---------CHHHHHHHHHh-CCeEEeccCC-----CCEEEEEEcCCCCHHHHHH
Confidence 9999998887555555566777776 35788888877 7999999753 5899999983 48899999
Q ss_pred HHHHHHHHHH
Q 042816 148 VMERIRRISQ 157 (163)
Q Consensus 148 ~~~~l~~~~~ 157 (163)
+++.|.++++
T Consensus 387 ~~~~l~~~l~ 396 (397)
T 3f9t_A 387 FIEILNSIKR 396 (397)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhhC
Confidence 9999988764
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.1e-12 Score=97.85 Aligned_cols=142 Identities=12% Similarity=0.050 Sum_probs=96.3
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc-----ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR-----FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~-----~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 75 (163)
|| +|+|+||+++ ++++++.+..... .++.++++|.++...++..+ ++..+.++++.+++.+.|++.
T Consensus 270 ~~-~G~~iG~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~------~~~~~~~~~~~~~l~~~L~~~~ 341 (429)
T 3k28_A 270 IG-GGLPVGAYGG-KAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT------PESYVEFERKAEMLEAGLRKAA 341 (429)
T ss_dssp GG-TTSCCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc-CCCCeEEEEE-cHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45 4899999999 9999888865322 35788999998888887542 344555555666666655543
Q ss_pred ---C-CccccCCceeEEEeecCCcc-------cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhH
Q 042816 76 ---G-IECAKSNGGFYCWADMSGLI-------SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKD 144 (163)
Q Consensus 76 ---g-~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~ 144 (163)
+ +...++.|. ++++.+...- ..+......++++.|++ +||.+.|+. .+++|+++.. ++++
T Consensus 342 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~r~~~~~-t~e~ 412 (429)
T 3k28_A 342 EKHGIPHHINRAGS-MIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVE-QGVFLPPSQ------FEGLFLSTVH-SDAD 412 (429)
T ss_dssp HHTTCCCEEEEETT-EEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSST------TSCBCCCTTC-CHHH
T ss_pred hhCCCCEEEEeecc-EEEEEEecCCcccccccccccHHHHHHHHHHHHH-CCeEEecCC------CCCEEEECCC-CHHH
Confidence 3 333444444 5555653210 00111245788888876 899999862 4578888765 9999
Q ss_pred HHHHHHHHHHHHHHhh
Q 042816 145 IHVVMERIRRISQTCK 160 (163)
Q Consensus 145 l~~~~~~l~~~~~~~~ 160 (163)
+++++++|.+++++++
T Consensus 413 i~~~l~~l~~~l~~~~ 428 (429)
T 3k28_A 413 IEATIAAAEIAMSKLK 428 (429)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988754
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=9.7e-12 Score=96.64 Aligned_cols=146 Identities=5% Similarity=-0.015 Sum_probs=98.0
Q ss_pred CCceeEEEEEecCHHHHHHHHH---hh--cccCCChHHHHHHHHhcCChHHHHHHHHHHH-HHHHHHHHHHHHHhhhc-C
Q 042816 4 LPGFRISVIYSYNNSVLAAAKK---LA--RFSSVSAPSQNLLVSMLSDTKFVQKFININR-ERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~---~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~-g 76 (163)
.+|+|+||+++ ++++++.+.. .. ..++.++++|.++...|+.... +++.++.+ +.....++.+.+.|+++ +
T Consensus 292 gg~~~lg~v~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 369 (459)
T 4a6r_A 292 SGYLPIGAVFV-GKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRD-EGIVQRVKDDIGPYMQKRWRETFSRFEH 369 (459)
T ss_dssp TTSSCCEEEEE-CHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHH-TCHHHHHHHTHHHHHHHHHHHHHTTCTT
T ss_pred CCCCCccceee-CHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34499999999 9999999873 22 2468899999998888874321 23445555 44455555555555555 3
Q ss_pred CccccCCceeEEEeecCCccc-C----CChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLIS-S----YSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVME 150 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~-~----~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~ 150 (163)
+...++.|. ++++++..... . +......++++.|++ +||.+.|+. +++||+... .++++++++++
T Consensus 370 ~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g-------~~iRi~~~~~~t~e~i~~~l~ 440 (459)
T 4a6r_A 370 VDDVRGVGM-VQAFTLVKNKAKRELFPDFGEIGTLCRDIFFR-NNLIMRACG-------DHIVSAPPLVMTRAEVDEMLA 440 (459)
T ss_dssp EEEEEEETT-EEEEEECSBTTTTBCCSSTTHHHHHHHHHHHH-TTEECEEET-------TEEEECCCTTCCHHHHHHHHH
T ss_pred eEEEEEEEE-EEEEEEecCccccccccchHHHHHHHHHHHHH-CCeEEecCC-------CEEEEECCCCCCHHHHHHHHH
Confidence 555566655 55556653210 0 001126788888887 799999862 799999542 38899999999
Q ss_pred HHHHHHHHhh
Q 042816 151 RIRRISQTCK 160 (163)
Q Consensus 151 ~l~~~~~~~~ 160 (163)
+|.+++.+..
T Consensus 441 ~l~~~l~~~~ 450 (459)
T 4a6r_A 441 VAERCLEEFE 450 (459)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887653
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.1e-12 Score=97.88 Aligned_cols=145 Identities=12% Similarity=0.134 Sum_probs=96.3
Q ss_pred Cc-eeEEEEEecCHHHHHHHHH-------hhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 5 PG-FRISVIYSYNNSVLAAAKK-------LAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 5 ~G-~RiG~~i~~~~~~~~~~~~-------~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+| +|+||+++ ++++++.+.. ... .++.++++|.++...|+..+. +++.++.++..+..++.+.+ +..
T Consensus 284 ~G~~~ig~v~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~-l~~ 360 (448)
T 3dod_A 284 GGYLPIAVTFA-TEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFES-ENIVEQVAEKSKKLHFLLQD-LHA 360 (448)
T ss_dssp TTSSCCEEEEE-EHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHH-HTT
T ss_pred CCcCceEEEEE-CHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHH-Hhc
Confidence 38 59999999 8999998876 222 357789999988888864321 23344555555555555555 544
Q ss_pred cC-CccccCCceeEEEeecCCcccC-C--Ch--hhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHH
Q 042816 75 LG-IECAKSNGGFYCWADMSGLISS-Y--SE--KGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHV 147 (163)
Q Consensus 75 ~g-~~~~~~~~g~~~~~~~~~~~~~-~--~~--~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~ 147 (163)
+. +...++ .|.++|++++..... . .. ....++++.|++ +||.+.|+ .+++||+.+ .++++++++
T Consensus 361 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~-------~~~iRi~~~~~~t~e~i~~ 431 (448)
T 3dod_A 361 LPHVGDIRQ-LGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRE-LGMLTRPL-------GDVIAFLPPLASTAEELSE 431 (448)
T ss_dssp STTEEEEEE-ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH-TTEECCEE-------TTEEEECCCTTCCHHHHHH
T ss_pred CCCeEEEEe-eeEEEEEEEccCcccccccchhhHHHHHHHHHHHH-CCcEEecc-------CCEEEEECCCCCCHHHHHH
Confidence 43 223333 355778888653200 0 00 014678888887 79999986 278999654 248899999
Q ss_pred HHHHHHHHHHHhhh
Q 042816 148 VMERIRRISQTCKS 161 (163)
Q Consensus 148 ~~~~l~~~~~~~~~ 161 (163)
++++|.++++++..
T Consensus 432 ~l~~l~~~l~~~~~ 445 (448)
T 3dod_A 432 MVAIMKQAIHEVTS 445 (448)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987654
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-12 Score=96.95 Aligned_cols=146 Identities=10% Similarity=0.017 Sum_probs=93.3
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc-----ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR-----FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~-----~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
|+ +|+|+||+++ ++++++.+..... .++.+++++.++...++.... +++.++.++..+..++.+.+.+...+
T Consensus 269 ~~-~G~~~G~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ 345 (427)
T 3fq8_A 269 IG-GGLPVGAYGG-KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PGTYEYLDQITKRLSDGLLAIAQETG 345 (427)
T ss_dssp GG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hh-CCcceEEEEE-cHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55 6999999999 9999988875322 246688888887777642110 12233333333333333444444444
Q ss_pred CccccCCceeEEEeecCCc-cc------CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGL-IS------SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVM 149 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~-~~------~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~ 149 (163)
+....+..|+++|++++.. .. ........++++.|++ +||.+.|+.. .++|+++.. +++++++++
T Consensus 346 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~------~r~~~~~~~-t~e~i~~~l 417 (427)
T 3fq8_A 346 HAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPSQF------EAGFTSLAH-TEEDIDATL 417 (427)
T ss_dssp CCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT------SCEECCTTC-CHHHHHHHH
T ss_pred CCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHH-CCcEEecCCC------CCEEeeCcC-CHHHHHHHH
Confidence 4444455677888888642 10 0111235678888876 8999998642 356666554 899999999
Q ss_pred HHHHHHHHH
Q 042816 150 ERIRRISQT 158 (163)
Q Consensus 150 ~~l~~~~~~ 158 (163)
++|.+++++
T Consensus 418 ~~l~~~l~~ 426 (427)
T 3fq8_A 418 AAARTVMSA 426 (427)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998865
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-12 Score=97.57 Aligned_cols=146 Identities=12% Similarity=0.040 Sum_probs=95.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhh-----cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLA-----RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~-----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
|| +|+|+||+++ ++++++.+.... ..++.+++.+.++...|+.... +++.++.++.....++.+.+.+..++
T Consensus 270 ~~-~G~~~G~~~~-~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~ 346 (429)
T 4e77_A 270 IG-GGMPVGAFGG-RREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ-VGVYETLTELTDSLATGLRHAAKEEN 346 (429)
T ss_dssp GG-TTSCCEEEEE-CHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cc-CCCCeEEEEE-CHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45 6999999999 999998887532 1357888998877777652110 22333444433334444445445555
Q ss_pred CccccCCceeEEEeecCCccc--------CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLIS--------SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVV 148 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~ 148 (163)
+....+..|.++|++++..-. ..+.....++++.|++ +||.+.|+. ...+|+++.. ++++++++
T Consensus 347 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~~~~~~~~-t~e~i~~~ 418 (429)
T 4e77_A 347 IPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLE-EGVYLAPSA------FEAGFMSLAH-SNEDIQKT 418 (429)
T ss_dssp CCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHH-TTEECCSST------TSCEECCTTC-CHHHHHHH
T ss_pred CceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHH-CCeEEeecC------CCCEEEeccC-CHHHHHHH
Confidence 555555667888988875310 0011234788888887 799999874 2356777554 99999999
Q ss_pred HHHHHHHHHH
Q 042816 149 MERIRRISQT 158 (163)
Q Consensus 149 ~~~l~~~~~~ 158 (163)
+++|.+++++
T Consensus 419 l~~l~~~l~~ 428 (429)
T 4e77_A 419 VNAARRCFAK 428 (429)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.8e-12 Score=93.45 Aligned_cols=121 Identities=17% Similarity=0.126 Sum_probs=87.9
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccccCCc---eeEEEeecCCcccCCChhhHHH
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECAKSNG---GFYCWADMSGLISSYSEKGELE 106 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~ 106 (163)
+++.+.+.++...+... .+++++.++.++++++++.+.|+++ |+++..+.+ +.++++.++.. +..+
T Consensus 234 ~~~~~~~~~~~~al~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 303 (382)
T 4hvk_A 234 SENVPSIVGFGKAAEIT---AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI-------EGES 303 (382)
T ss_dssp CCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTC-------CHHH
T ss_pred CcCHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCC-------CHHH
Confidence 34666666666666532 5678899999999999999999988 777776553 23555666542 6788
Q ss_pred HHHHHHHhcCeEEcCCCCCCCCC-----------------CceEEEEEec-CChhHHHHHHHHHHHHHHHhhhc
Q 042816 107 LWDKLLNVAKVNVTPGSSCHCIE-----------------PGWFSFSFTL-LTEKDIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 107 ~~~~l~~~~gi~v~pg~~f~~~~-----------------~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~~ 162 (163)
+.+.|.+ +||.+.||..|.... ++++||+++. .+.++++.+++.|.++++++++.
T Consensus 304 ~~~~l~~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~~ 376 (382)
T 4hvk_A 304 IVLSLDM-AGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSM 376 (382)
T ss_dssp HHHHHHH-TTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-CCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 8888866 899999998776432 5899999984 36789999999999999887653
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-11 Score=90.48 Aligned_cols=134 Identities=16% Similarity=0.214 Sum_probs=94.7
Q ss_pred ceeEE--EEEecCHHHHHHHHHhhccc----CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc
Q 042816 6 GFRIS--VIYSYNNSVLAAAKKLARFS----SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE 78 (163)
Q Consensus 6 G~RiG--~~i~~~~~~~~~~~~~~~~~----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 78 (163)
|.++| |+++ ++++++.+....... ..+...+..+...++++.+ ....+.+.++++++.+.|+++ |++
T Consensus 214 g~~~G~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~L~~~~g~~ 287 (356)
T 1v72_A 214 GVLAAEAIVLF-NTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLW-----LRNARKANAAAQRLAQGLEGLGGVE 287 (356)
T ss_dssp TCSSCEEEEES-SGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHH-----HHHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred CCcCccEEEEE-CHHHHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHhhCCCcE
Confidence 44666 8888 888888776554321 1233344445566665432 234566778889999999887 888
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
+..|.+++++|++++ .++.+.|.+ +||.+.||. |+ ++++|++++. .+++++++++++|.++++
T Consensus 288 ~~~~~~~~~~~~~~~-----------~~~~~~l~~-~gi~v~~g~-~~---~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 351 (356)
T 1v72_A 288 VLGGTEANILFCRLD-----------SAMIDALLK-AGFGFYHDR-WG---PNVVRFVTSFATTAEDVDHLLNQVRLAAD 351 (356)
T ss_dssp EESCCCSSEEEEEEC-----------HHHHHHHHH-TTCBCBCSS-SS---TTEEEEECCTTCCHHHHHHHHHHHHHTC-
T ss_pred EccCCCccEEEEEcC-----------HHHHHHHHh-cCeEEeccc-cC---CCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 877888999999876 267887865 899999987 54 6899999863 378999999999998877
Q ss_pred Hhhh
Q 042816 158 TCKS 161 (163)
Q Consensus 158 ~~~~ 161 (163)
+..+
T Consensus 352 ~~~~ 355 (356)
T 1v72_A 352 RTQE 355 (356)
T ss_dssp ----
T ss_pred hhcc
Confidence 6543
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.3e-11 Score=89.21 Aligned_cols=141 Identities=15% Similarity=0.125 Sum_probs=95.6
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhc-------------------ccCCChHHHHHHHHhcCChHHHHH--HHHHHHHHHH
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLAR-------------------FSSVSAPSQNLLVSMLSDTKFVQK--FININRERLR 62 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~-------------------~~~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~~~ 62 (163)
.+| +|++++ ++++++.+..... ..+++...+.++...+..- .+ .+++.++.++
T Consensus 211 ~~G--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~ 284 (376)
T 3f0h_A 211 PPG--ISVIVL-APRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEI---KKHGGADAEVARIA 284 (376)
T ss_dssp CSS--CEEEEE-CHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH---HHTTHHHHHHHHHH
T ss_pred CCc--eEEEEE-CHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHH---HHhcCHHHHHHHHH
Confidence 566 577889 8999888875321 1233333334444444321 22 3678889999
Q ss_pred HHHHHHHHHhhhcCCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CC
Q 042816 63 RLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LT 141 (163)
Q Consensus 63 ~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~ 141 (163)
++++++.+.|+++|+++..+..+..++.-.+... +..++.+.|.+++||.+.||.. ...++++||++.. .+
T Consensus 285 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~l~~~~gi~v~~g~~--~~~~~~lRis~~~~~t 356 (376)
T 3f0h_A 285 SQAADFRAKIKDLPFELVSESPANGVTSVHPTTA------NAYDIFLKLKDEYGIWICPNGG--EMKDTIFRVGHIGALT 356 (376)
T ss_dssp HHHHHHHHHTTTSSEEECCSSBBTTEEEEEESSS------CHHHHHHHHHHHSSEECEECCG--GGTTTCEEEECCSSCC
T ss_pred HHHHHHHHHHHHcCCccCccccCceEEEEeCCCC------CHHHHHHHHHHhCCEEEecCcc--ccCCCEEEEecCCCCC
Confidence 9999999999988876665443333332223322 6788999998855999999843 2336899999963 48
Q ss_pred hhHHHHHHHHHHHHHHH
Q 042816 142 EKDIHVVMERIRRISQT 158 (163)
Q Consensus 142 ~~~l~~~~~~l~~~~~~ 158 (163)
++++++++++|.+++++
T Consensus 357 ~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 357 HEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 89999999999998764
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.8e-12 Score=96.35 Aligned_cols=144 Identities=10% Similarity=0.082 Sum_probs=95.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc-----ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR-----FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~-----~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 75 (163)
+|. |+|+||+++ ++++++.+..... .++.|++.+.++...|+.- ++ +...+.++++.+++.+.|++.
T Consensus 273 l~~-G~~~G~v~~-~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~---~~--~~~~~~~~~~~~~l~~~L~~~~ 345 (434)
T 2epj_A 273 IGG-GFPVGAVAG-SREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKAL---EE--EPVYSVSREAAKALEEAASEVL 345 (434)
T ss_dssp GGT-TSSCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHH---HH--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcC-Ccceeeeee-cHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHH
Confidence 454 899999999 8999887765221 2467888888877776532 11 234455555666666666543
Q ss_pred ---CCccccCCceeEEEeecCCc-cc------CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHH
Q 042816 76 ---GIECAKSNGGFYCWADMSGL-IS------SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDI 145 (163)
Q Consensus 76 ---g~~~~~~~~g~~~~~~~~~~-~~------~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l 145 (163)
++....+..|.++|++++.. .. .....+..++++.|++ +||.+.||.. .++|+++.. +++++
T Consensus 346 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~------~~~~~~~~~-t~e~i 417 (434)
T 2epj_A 346 DRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLR-RGVFIAPSNL------EAVFTGLPH-QGEAL 417 (434)
T ss_dssp HHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT------SCEECCTTC-SHHHH
T ss_pred hhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHH-CCeEEeccCC------CcEEEeccC-CHHHH
Confidence 55332233456788888641 10 0011246788888886 8999999742 357877654 99999
Q ss_pred HHHHHHHHHHHHHhh
Q 042816 146 HVVMERIRRISQTCK 160 (163)
Q Consensus 146 ~~~~~~l~~~~~~~~ 160 (163)
++++++|.++++++.
T Consensus 418 ~~~l~~l~~~l~~~~ 432 (434)
T 2epj_A 418 EIAVEGLRSSLKTVL 432 (434)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988764
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.3e-12 Score=96.60 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=92.5
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc-----ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR-----FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~-----~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 75 (163)
|| +|+|+||+++ ++++++.+..... .++.|+++|.++...|+.- ++ .+...+.++++.+++.+.|++.
T Consensus 268 l~-~G~~~G~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~---~~-~~~~~~~~~~~~~~l~~~L~~~~ 341 (424)
T 2e7u_A 268 LG-GGLPAAAYAG-RREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELL---EE-NPGYYAYLEDLGARLEAGLKEVL 341 (424)
T ss_dssp GG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHH---HH-CTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh-CCcceEEEEE-cHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHH---Hh-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 56 4899999999 8999888766221 2467888888887777532 11 1344555566666666666553
Q ss_pred ---CCcc-ccCCceeEEEeecCCc-cc------CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhH
Q 042816 76 ---GIEC-AKSNGGFYCWADMSGL-IS------SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKD 144 (163)
Q Consensus 76 ---g~~~-~~~~~g~~~~~~~~~~-~~------~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~ 144 (163)
++.. .++ .|.++|++++.. .. .....+..++++.|++ +||.+.||.. .++|+++.. ++++
T Consensus 342 ~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~------~~~~~~~~~-t~~~ 412 (424)
T 2e7u_A 342 KEKGLPHTVNR-VGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLD-RGIYWPPSNF------EAAFLSVAH-REED 412 (424)
T ss_dssp HHTTCCCEEEE-ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHT-TTEECCSSSS------SCEECCTTC-CHHH
T ss_pred HhCCCceEEEe-eceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHH-CCeEEeccCC------CceEeeccC-CHHH
Confidence 5432 344 455789998741 00 0011245688888886 8999999742 357887654 9999
Q ss_pred HHHHHHHHHHH
Q 042816 145 IHVVMERIRRI 155 (163)
Q Consensus 145 l~~~~~~l~~~ 155 (163)
+++++++|.++
T Consensus 413 i~~~l~~l~~~ 423 (424)
T 2e7u_A 413 VEKTLEALRKA 423 (424)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-11 Score=94.23 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=98.3
Q ss_pred CCCCc-eeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--C
Q 042816 2 LSLPG-FRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL--G 76 (163)
Q Consensus 2 ~~~~G-~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g 76 (163)
+| +| +|+||+++ ++++++.+..... .++.+++++.++...|+.- ++ +...+.++++.+++.+.|++. +
T Consensus 283 l~-~G~~~~G~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~ 355 (433)
T 1z7d_A 283 LS-GGHYPISAVLA-NDDIMLVIKPGEHGSTYGGNPLAASICVEALNVL---IN--EKLCENAEKLGGPFLENLKRELKD 355 (433)
T ss_dssp GG-TTSSCCEEEEE-CHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cc-CCCCCeEEEEE-CHHHHhhhccccccccCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 45 68 99999999 8888877755322 3567888888877777542 11 234555666666777666654 4
Q ss_pred Ccc--ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHH
Q 042816 77 IEC--AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIR 153 (163)
Q Consensus 77 ~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~ 153 (163)
+.. ..+..|.++|++++... .+..++++.|++ +||.+.|+ +++++|++++. ++++++++++++|.
T Consensus 356 ~~~~~~~~~~g~~~~i~~~~~~-----~~~~~~~~~l~~-~Gv~v~~~------~~~~iRi~~~~~~t~e~i~~~l~~l~ 423 (433)
T 1z7d_A 356 SKIVRDVRGKGLLCAIEFKNEL-----VNVLDICLKLKE-NGLITRDV------HDKTIRLTPPLCITKEQLDECTEIIV 423 (433)
T ss_dssp CTTEEEEEEETTEEEEEECTTT-----CCHHHHHHHHHH-TTEECCEE------TTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCCeEEEEeeeeEEEEEEccCh-----hHHHHHHHHHHH-CCeEEecC------CCCEEEEECCcCCCHHHHHHHHHHHH
Confidence 322 12234567888887520 146789998887 89999985 25799998763 48999999999999
Q ss_pred HHHHHhhh
Q 042816 154 RISQTCKS 161 (163)
Q Consensus 154 ~~~~~~~~ 161 (163)
++++++..
T Consensus 424 ~~l~~~~~ 431 (433)
T 1z7d_A 424 KTVKFFDE 431 (433)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99887643
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-11 Score=93.77 Aligned_cols=137 Identities=12% Similarity=0.136 Sum_probs=99.2
Q ss_pred Cc-eeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc-
Q 042816 5 PG-FRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA- 80 (163)
Q Consensus 5 ~G-~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~- 80 (163)
+| +|+||+++ ++++++.+..... .++.+++.+.++...|+.- ++ +...+.++++.+++.+.|++.++.+.
T Consensus 296 ~G~~~~G~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~ 369 (439)
T 2oat_A 296 GGLYPVSAVLC-DDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVL---EE--ENLAENADKLGIILRNELMKLPSDVVT 369 (439)
T ss_dssp TTSSCCEEEEE-CHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHTTSCTTTEE
T ss_pred CCCCCeEEEEE-CHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHH---hh--hhHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 47 99999999 8888877755322 3567888888887777643 22 24566777888888888887654431
Q ss_pred -cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHH
Q 042816 81 -KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 81 -~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
.+..|.++|++++... + .+..++++.|++ +||.+.|+ +++++|++++. ++++++++++++|.+++++
T Consensus 370 ~~~~~g~~~~v~l~~~~---~-~~~~~l~~~l~~-~Gv~v~~~------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 370 AVRGKGLLNAIVIKETK---D-WDAWKVCLRLRD-NGLLAKPT------HGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp EEEEETTEEEEEECCCS---S-CCHHHHHHHHHH-TTEECCBS------SSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEeeeeEEEEEEecCc---c-HHHHHHHHHHHH-CCeEEecC------CCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 2234567888887520 0 146789998887 89999984 25799998753 4889999999999998764
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.21 E-value=6.9e-10 Score=84.61 Aligned_cols=148 Identities=9% Similarity=-0.019 Sum_probs=101.1
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhccc---CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARFS---SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
+++|.|+||++++++++++.+....... +++...+.++...+... .++.++..++.+.++++++.+.|++.|+++
T Consensus 228 ~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 305 (417)
T 3n0l_A 228 TLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFN--LSDEWKVYAKQVRTNAQVLANVLMDRKFKL 305 (417)
T ss_dssp TTCSCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred ccCCCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhCCcee
Confidence 4689999999993389999888776532 33444444444443321 024457788888889999999998888776
Q ss_pred cc-CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC----CCceEEEEEec-----CChhHHHHHH
Q 042816 80 AK-SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI----EPGWFSFSFTL-----LTEKDIHVVM 149 (163)
Q Consensus 80 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~----~~~~iRi~~~~-----~~~~~l~~~~ 149 (163)
.. +..+.++|++++... .+...+.+.|. ++||.+.++..+... .++.+|+++.. .+++++++++
T Consensus 306 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~ 379 (417)
T 3n0l_A 306 VSDGTDNHLVLMSFLDRE-----FSGKDADLALG-NAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVS 379 (417)
T ss_dssp GGGSCSSSEEEEECTTSS-----SCHHHHHHHHH-HTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHH
T ss_pred ccCCCCceEEEEEcccCC-----CCHHHHHHHHH-HcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHH
Confidence 64 345667888885321 15567776665 589999876543321 24679999863 3568999999
Q ss_pred HHHHHHHHH
Q 042816 150 ERIRRISQT 158 (163)
Q Consensus 150 ~~l~~~~~~ 158 (163)
+.|.+++.+
T Consensus 380 ~~l~~~l~~ 388 (417)
T 3n0l_A 380 NYIADILDD 388 (417)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999988864
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-12 Score=96.33 Aligned_cols=139 Identities=14% Similarity=0.179 Sum_probs=97.5
Q ss_pred CCCCceeEEEEEecCHHHHHH-HHHhhc---------ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHH--HHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAA-AKKLAR---------FSSVSAPSQNLLVSMLSDTKFVQKFININRERL--RRLYVKFV 69 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~-~~~~~~---------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~l~ 69 (163)
++.++ |+||+++ ++++++. +..... ..+++...+.++...++.- .. +..+.+ +++++++.
T Consensus 211 ~~~~~-~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~---~~~~~~~~~~~~~~l~ 282 (371)
T 2e7j_A 211 MAASG-PIGVMGM-KEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHV---RE---RIKRWDEEVEKARRFA 282 (371)
T ss_dssp SSCCS-SCEEEEE-CTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHH---HH---HGGGHHHHHHHHHHHH
T ss_pred CCCCC-CcEEEEE-echhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHH
Confidence 45554 9999999 7777776 654433 2234444444444444321 22 566667 78888999
Q ss_pred HHhhhcCCccccCC--ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC----CCCceEE-EEEec--C
Q 042816 70 AGLRQLGIECAKSN--GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC----IEPGWFS-FSFTL--L 140 (163)
Q Consensus 70 ~~l~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~----~~~~~iR-i~~~~--~ 140 (163)
+.|+++|+++..|. .+.++|++++ +..++.+.|.+ +||.+.| ..|.. ..++++| ++++. .
T Consensus 283 ~~L~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~-~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~ 351 (371)
T 2e7j_A 283 AEMEKLGIKQLGDNPHNHDLMFFHAE---------VLYEISKKAKG-GRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGL 351 (371)
T ss_dssp HHHHHTTCEEESSSSCCSSEEEEECH---------HHHHHHHHSSS-GGGHHHH-HHHHTTEECSCTTCCSEEEEECTTC
T ss_pred HHHHHcCcEEecCCCccCceEEEECC---------CHHHHHHHHHH-CCEEEEe-ccccccccCCCCCceEEEEeeccCC
Confidence 99988888887664 3557898886 35788888875 8999998 43422 1268999 99985 4
Q ss_pred ChhHHHHHHHHHHHHHHHh
Q 042816 141 TEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 141 ~~~~l~~~~~~l~~~~~~~ 159 (163)
++++++.++++|.++++++
T Consensus 352 ~~~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 352 SDEEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp CHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 8999999999999988764
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.9e-11 Score=93.71 Aligned_cols=142 Identities=10% Similarity=-0.065 Sum_probs=100.9
Q ss_pred ceeEEEEEecCHHHHHHHHH-hh--------------------cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 042816 6 GFRISVIYSYNNSVLAAAKK-LA--------------------RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRL 64 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~-~~--------------------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 64 (163)
|+|+||+++ ++++++.+.. .. ...+.+.+.+.++..++.... .+.+++..+.+.++
T Consensus 276 G~~~G~~~~-~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g--~~~l~~~~~~~~~~ 352 (474)
T 1wyu_B 276 GPGSGPVGV-KAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLG--LEGLKKAAALAVLN 352 (474)
T ss_dssp CCCCCCEEE-CGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred CCCeEEEEE-cHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 579999999 7777765541 00 012356677777777776422 45678889999999
Q ss_pred HHHHHHHhhhcCCccccCCceeE-EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CCh
Q 042816 65 YVKFVAGLRQLGIECAKSNGGFY-CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTE 142 (163)
Q Consensus 65 ~~~l~~~l~~~g~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~ 142 (163)
++++.+.|++.|+++..+...++ +|++++... +..++++.|++ +||.+ |+..|....++++||+++. .+.
T Consensus 353 ~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~-~Gi~~-~~~~~~~~~~~~lRis~~~~~t~ 424 (474)
T 1wyu_B 353 ARYLKELLKEKGYRVPYDGPSMHEFVAQPPEGF------RALDLAKGLLE-LGFHP-PTVYFPLIVKEALMVEPTETEAK 424 (474)
T ss_dssp HHHHHHHHHHTTCBCSSCSSCCSCEEEBCSTTC------CHHHHHHHHHH-TTCCC-CEESCSTTSTTCEEECCCTTSCH
T ss_pred HHHHHHHHhhcCcEecCCCCcceEEEEEcCCCC------CHHHHHHHHHH-CCccc-cccccccccCCEEEEEeecCCCH
Confidence 99999999988877643333332 566774322 67899999987 79985 6666653336899999984 367
Q ss_pred hHHHHHHHHHHHHHHH
Q 042816 143 KDIHVVMERIRRISQT 158 (163)
Q Consensus 143 ~~l~~~~~~l~~~~~~ 158 (163)
+++++++++|.+++++
T Consensus 425 e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 425 ETLEAFAEAMGALLKK 440 (474)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8999999999987753
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-10 Score=89.25 Aligned_cols=147 Identities=12% Similarity=0.005 Sum_probs=94.6
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc--c-CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF--S-SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----- 75 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~--~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----- 75 (163)
++|+|.||+++ ++++++.+...... . +++...+.++...+.... +.+++..++.+.++++++.+.|++.
T Consensus 250 l~G~~gG~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 326 (447)
T 3h7f_A 250 LGGGRSGLIVG-KQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAA--TPEFADRQRRTLSGARIIADRLMAPDVAKA 326 (447)
T ss_dssp GCCCSCEEEEE-CGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHHHHHHTSHHHHHT
T ss_pred CCCCCeEEEEE-CHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 46899999999 88888888776543 2 233333444433332210 2345778888888999999999887
Q ss_pred CCcccc-CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc----CCCCCCCCCCceEEEEEec-----CChhHH
Q 042816 76 GIECAK-SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT----PGSSCHCIEPGWFSFSFTL-----LTEKDI 145 (163)
Q Consensus 76 g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----pg~~f~~~~~~~iRi~~~~-----~~~~~l 145 (163)
|+++.. +.+++++|+++.... .+...+.+ +++++||.+. |+..+....++++||+... .+++++
T Consensus 327 g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei 400 (447)
T 3h7f_A 327 GVSVVSGGTDVHLVLVDLRDSP-----LDGQAAED-LLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEF 400 (447)
T ss_dssp TCEEGGGSCSSSEEEEECTTSS-----CCHHHHHH-HHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHH
T ss_pred CeEEecCCCCCCEEEEEcCCCC-----CCHHHHHH-HHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHH
Confidence 887764 456778888885421 13444444 5565899999 6643333336789998753 367899
Q ss_pred HHHHHHHHHHHHHh
Q 042816 146 HVVMERIRRISQTC 159 (163)
Q Consensus 146 ~~~~~~l~~~~~~~ 159 (163)
+++++.|.+++.+.
T Consensus 401 ~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 401 TEVADIIATALATG 414 (447)
T ss_dssp HHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887643
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.8e-11 Score=91.60 Aligned_cols=142 Identities=7% Similarity=-0.041 Sum_probs=89.3
Q ss_pred CCCCceeEEEEEecCHHHHHHHHH---h----hcccCCChHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKK---L----ARFSSVSAPSQNLLVSMLSD-TKFVQKFININRERLRRLYVKFVAGLR 73 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~---~----~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~ 73 (163)
|+ +|+|+||+++ ++++++.+.. . ...++.|+++|.++...|+. . .+...+.++++.+++.+.|+
T Consensus 271 l~-~G~~~G~v~~-~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~------~~~~~~~~~~~~~~l~~~L~ 342 (453)
T 2cy8_A 271 SA-GGLPGGILGG-REDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL------EDDVCAKINDLGQFAREAMN 342 (453)
T ss_dssp GG-TTSSCEEEEE-CHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH------HTTHHHHHHHHHHHHHHHHH
T ss_pred hh-CCcceEEEec-hHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHH
Confidence 45 3899999999 8998887755 1 11356788888877766654 1 01223334444444444444
Q ss_pred h----cCCccccCCceeEEEeecCC-----c-----cc---CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEE
Q 042816 74 Q----LGIECAKSNGGFYCWADMSG-----L-----IS---SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFS 136 (163)
Q Consensus 74 ~----~g~~~~~~~~g~~~~~~~~~-----~-----~~---~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~ 136 (163)
+ +++....+..|.++|++++. . .. .....+..++++.|++ +||.+.|+ +.+|++
T Consensus 343 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gv~v~~~--------~~~~l~ 413 (453)
T 2cy8_A 343 HLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALIL-EGVDIGGR--------GSVFLS 413 (453)
T ss_dssp HHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH-TTEECBTT--------TEEECC
T ss_pred HHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHH-CCeEEeCC--------CCEEee
Confidence 3 34433223445678988874 1 00 0011246788888886 89999653 237887
Q ss_pred EecCChhHHHHHHHHHHHHHHHhhh
Q 042816 137 FTLLTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 137 ~~~~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
+.. +++++++++++|.+++.++++
T Consensus 414 ~~~-t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 414 AQH-EREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp TTC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccC-CHHHHHHHHHHHHHHHHHHHh
Confidence 554 999999999999999887654
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.8e-11 Score=91.13 Aligned_cols=140 Identities=13% Similarity=0.073 Sum_probs=96.0
Q ss_pred Cc-eeEEEEEecCHHHHHHHHHhh---------c--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042816 5 PG-FRISVIYSYNNSVLAAAKKLA---------R--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 5 ~G-~RiG~~i~~~~~~~~~~~~~~---------~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
+| +|+||+++ ++++++.+.... . .++.++++|.++..+|+.- ++ +...+.++++.+++.+.|
T Consensus 292 ~G~~~~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~---~~--~~~~~~~~~~~~~l~~~L 365 (449)
T 3a8u_X 292 NGAIPMGAVIA-STEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLL---QK--ENLVQSVAEVAPHFEKAL 365 (449)
T ss_dssp TTSSCCEEEEE-EHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEE-CHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHH
Confidence 36 99999999 889999887641 1 2467888888887777642 11 234556666777777777
Q ss_pred hhc-CCccc--cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHH
Q 042816 73 RQL-GIECA--KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVV 148 (163)
Q Consensus 73 ~~~-g~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~ 148 (163)
+++ ++... .+..|.++|++++....... .+..++.+.|++ +||.+.|+ + +++||++. ..++++++++
T Consensus 366 ~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~-~~~~~~~~~l~~-~Gv~v~~~------g-~~iRis~~~~~t~~~i~~~ 436 (449)
T 3a8u_X 366 HGIKGAKNVIDIRNFGLAGAIQIAPRDGDAI-VRPFEAGMALWK-AGFYVRFG------G-DTLQFGPTFNSKPQDLDRL 436 (449)
T ss_dssp HTTTTSTTEEEEEEETTEEEEEECCBTTBSS-HHHHHHHHHHHH-HTEECEEE------T-TEEEECCCTTCCHHHHHHH
T ss_pred HHHhcCCCeEEEeeeEEEEEEEEecCccccc-ccHHHHHHHHHH-CCcEEecC------C-CEEEEECCCcCCHHHHHHH
Confidence 664 23221 13356789999875310000 023468888886 79999986 1 78999964 3489999999
Q ss_pred HHHHHHHHHHh
Q 042816 149 MERIRRISQTC 159 (163)
Q Consensus 149 ~~~l~~~~~~~ 159 (163)
+++|.++++++
T Consensus 437 l~~l~~~l~~~ 447 (449)
T 3a8u_X 437 FDAVGEVLNKL 447 (449)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=88.79 Aligned_cols=137 Identities=9% Similarity=0.054 Sum_probs=95.9
Q ss_pred eEE-EEEecCHHHHHHHHHhhc-----------ccCCChHHHHHHHHhcCChH------------HHHHHHHHHHHHHHH
Q 042816 8 RIS-VIYSYNNSVLAAAKKLAR-----------FSSVSAPSQNLLVSMLSDTK------------FVQKFININRERLRR 63 (163)
Q Consensus 8 RiG-~~i~~~~~~~~~~~~~~~-----------~~~~s~~~q~~~~~~l~~~~------------~~~~~~~~~~~~~~~ 63 (163)
++| |+++ ++++++.+..... ..+++.+.+.++..+++.-. .+++++++.++.+++
T Consensus 232 ~~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 310 (406)
T 3cai_A 232 PIGAMVFR-DPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNR 310 (406)
T ss_dssp SCEEEEES-CHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CcCeEEEE-ehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHH
Confidence 399 9999 8888877654431 13345555544444442210 012367889999999
Q ss_pred HHHHHHHHhhhc-CCccccCC---ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCC------CCCCC-CCce
Q 042816 64 LYVKFVAGLRQL-GIECAKSN---GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGS------SCHCI-EPGW 132 (163)
Q Consensus 64 ~~~~l~~~l~~~-g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~------~f~~~-~~~~ 132 (163)
+++++.+.|+++ |+++..|. ++ ++++.++.. +..++.+.|.+ +||.+.+|+ .|+.. .+++
T Consensus 311 ~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~L~~-~gi~v~~g~~~~~~~~~g~~~~~~~ 381 (406)
T 3cai_A 311 VFDYLMVSLRSLPLVMLIGRPEAQIP-VVSFAVHKV-------PADRVVQRLAD-NGILAIANTGSRVLDVLGVNDVGGA 381 (406)
T ss_dssp HHHHHHHHHHTCTTEEECCCCSSBCS-EEEEEETTB-------CHHHHHHHHHH-TTEECEECCSCHHHHHHTTTTTTCC
T ss_pred HHHHHHHHHhcCCCeEEcCCccccCC-EEEEEECCc-------CHHHHHHHHHH-CCcEEecCChHHHHHHcCCCCCCCe
Confidence 999999999987 77776653 55 678887642 56788888876 899999987 33322 2589
Q ss_pred EEEEEec-CChhHHHHHHHHHHH
Q 042816 133 FSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 133 iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
+||+++. .++++++.+++.|++
T Consensus 382 iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 382 VTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHT
T ss_pred EEEEeecCCCHHHHHHHHHHHHH
Confidence 9999985 367889988888764
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.2e-10 Score=87.75 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=92.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc-------cCCChHH-HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF-------SSVSAPS-QNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLR 73 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~-------~~~s~~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 73 (163)
++++| |+||+++.++++++.+...... .+.+... |.++...++ .++ +...+...++.+++.+.|+
T Consensus 258 ~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~---~~~---~~~~~~~~~~~~~l~~~L~ 330 (456)
T 2ez2_A 258 DCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLRE---AMQ---YEYIEHRVKQVRYLGDKLK 330 (456)
T ss_dssp TTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHH---HTC---HHHHHHHHHHHHHHHHHHH
T ss_pred cCCCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHH---HhH---HHHHHHHHHHHHHHHHHHh
Confidence 45567 8999998568888887665432 1223322 221222221 111 1223333445567777777
Q ss_pred hcCCccccCCceeEEEeecCC---cccCCChhhHHHHHHHHHHhcCeEEcC-CCCCC----------CCCCceEEEEEec
Q 042816 74 QLGIECAKSNGGFYCWADMSG---LISSYSEKGELELWDKLLNVAKVNVTP-GSSCH----------CIEPGWFSFSFTL 139 (163)
Q Consensus 74 ~~g~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~gi~v~p-g~~f~----------~~~~~~iRi~~~~ 139 (163)
+.|+++..|.+++++|++++. ....... ....+++.|++++||.+.| |..|. ..+.+++||+++.
T Consensus 331 ~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~ 409 (456)
T 2ez2_A 331 AAGVPIVEPVGGHAVFLDARRFCEHLTQDEF-PAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPR 409 (456)
T ss_dssp HTTCCBCSSCCSSEEEEEHHHHTTTSCGGGC-HHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCT
T ss_pred cCCCccccCCCceEEEEEhHHhcCCCChhhc-cHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCC
Confidence 778888888999999998742 1100000 1334477775568999766 54331 1124799999984
Q ss_pred --CChhHHHHHHHHHHHHHHHhh
Q 042816 140 --LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 140 --~~~~~l~~~~~~l~~~~~~~~ 160 (163)
.+++++++++++|.+++++..
T Consensus 410 ~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 410 RVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTGG
T ss_pred CCCCHHHHHHHHHHHHHHHhhhh
Confidence 389999999999999987654
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.9e-10 Score=85.98 Aligned_cols=142 Identities=9% Similarity=0.022 Sum_probs=95.4
Q ss_pred CceeEEEEEecCH---HHHHHHHHhhcc--c-CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 5 PGFRISVIYSYNN---SVLAAAKKLARF--S-SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 5 ~G~RiG~~i~~~~---~~~~~~~~~~~~--~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+|.|.||+++ ++ ++.+.+...... . +++...+.++...+... .++++++.++.+.++++++.+.|++.|++
T Consensus 235 ~g~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 311 (420)
T 3gbx_A 235 AGPRGGLILA-KGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEA--MEPEFKVYQQQVAKNAKAMVEVFLNRGYK 311 (420)
T ss_dssp CSCSCEEEEE-SSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred CCCCceEEEE-cCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHH--HhHhHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 3677799999 65 788877765443 2 33344444433333211 02456788889999999999999988888
Q ss_pred cccC-CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC-------CCCCCCCCCceEEEEEec-----CChhHH
Q 042816 79 CAKS-NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP-------GSSCHCIEPGWFSFSFTL-----LTEKDI 145 (163)
Q Consensus 79 ~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p-------g~~f~~~~~~~iRi~~~~-----~~~~~l 145 (163)
+..+ ..+.++|++++... .+...+.+.|. ++||.+.| |..|+ ++.+||++.. .+++++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~---~~~iRi~~~~~~~~~~~~~~i 382 (420)
T 3gbx_A 312 VVSGGTENHLFLLDLVDKN-----LTGKEADAALG-RANITVNKNSVPNDPKSPFV---TSGIRIGSPAVTRRGFKEAEV 382 (420)
T ss_dssp EGGGSCSSSEEEEECGGGT-----CCHHHHHHHHH-HTTEECEEECCTTCSSCTTT---CSEEEEECHHHHHTTCCHHHH
T ss_pred eccCCCCCeEEEEEcCCCC-----CCHHHHHHHHH-HCCcEeccccCCCCccccCC---CcceEEecchhcccCCCHHHH
Confidence 7654 56778888886421 14566666664 58999998 44443 4569999864 246888
Q ss_pred HHHHHHHHHHHHH
Q 042816 146 HVVMERIRRISQT 158 (163)
Q Consensus 146 ~~~~~~l~~~~~~ 158 (163)
+.+++.|.+++++
T Consensus 383 ~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 383 KELAGWMCDVLDN 395 (420)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 9998888887754
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=89.36 Aligned_cols=145 Identities=15% Similarity=0.162 Sum_probs=100.9
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc---------ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR---------FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGL 72 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~---------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 72 (163)
+|.+| +||+++ ++++.+.+..... ..+++...+.++..++..- .+++++.++.++++++++.+.|
T Consensus 227 ~g~~g--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~l~~~L 300 (423)
T 3lvm_A 227 YGPKG--IGALYV-RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIA---KEEMATEMERLRGLRNRLWNGI 300 (423)
T ss_dssp TSCSS--CEEEEE-CBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCC--eEEEEE-eccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 56666 999999 7666555544321 2345666666666666532 4557899999999999999999
Q ss_pred hhc-CCccccCCc---eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCC-----------------Cc
Q 042816 73 RQL-GIECAKSNG---GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE-----------------PG 131 (163)
Q Consensus 73 ~~~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~-----------------~~ 131 (163)
+++ |+++..+.+ +.++++.++.. +..++.+.|.+ |.+.+|..|.... ++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~l~~---i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 370 (423)
T 3lvm_A 301 KDIEEVYLNGDLEHGAPNILNVSFNYV-------EGESLIMALKD---LAVSSGSACTSASLEPSYVLRALGLNDELAHS 370 (423)
T ss_dssp TTSTTEEEESCSTTBCTTEEEEEETTS-------CHHHHHHHTTT---EECBCCCC-----CCCCHHHHHHTCCHHHHHT
T ss_pred hcCCCEEEeCCccccCCCeEEEEeCCC-------CHHHHHHHHhh---heeccCccccCCCccccHHHHHhCCCccccCc
Confidence 988 888776654 23344444431 56778876643 9999998765311 48
Q ss_pred eEEEEEec-CChhHHHHHHHHHHHHHHHhhhc
Q 042816 132 WFSFSFTL-LTEKDIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 132 ~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~~ 162 (163)
++||+++. .++++++.+++.|.++++++++.
T Consensus 371 ~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~~ 402 (423)
T 3lvm_A 371 SIRFSLGRFTTEEEIDYTIELVRKSIGRLRDL 402 (423)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 99999984 37789999999999999887653
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-09 Score=82.66 Aligned_cols=147 Identities=10% Similarity=0.073 Sum_probs=94.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc-c-------------------------CCChHHHHHHHHhcCChHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF-S-------------------------SVSAPSQNLLVSMLSDTKFVQKFIN 55 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~-~-------------------------~~s~~~q~~~~~~l~~~~~~~~~~~ 55 (163)
.+++|.|+||++++++++++.+...... . ..+.+...++...++ .++
T Consensus 188 K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~-------~~~ 260 (393)
T 1mdo_A 188 KNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ-------KLD 260 (393)
T ss_dssp SSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHH-------THH
T ss_pred CccccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHH-------HHH
Confidence 5677789999999448998888765432 1 123333322222222 133
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcccc-C-----CceeEEEeecCC---cccCCChhhHHHHHHHHHHhcCeEEcCCCCCC
Q 042816 56 INRERLRRLYVKFVAGLRQLGIECAK-S-----NGGFYCWADMSG---LISSYSEKGELELWDKLLNVAKVNVTPGSSCH 126 (163)
Q Consensus 56 ~~~~~~~~~~~~l~~~l~~~g~~~~~-~-----~~g~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~ 126 (163)
+..+..+++.+++.+.|++.++++.. + .+++++|+.++. .. +..++.+.|.+ +||.+.+|..+.
T Consensus 261 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~l~~~l~~-~gi~v~~~~~~~ 333 (393)
T 1mdo_A 261 ALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGI------TRDALMASLKT-KGIGTGLHFRAA 333 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSS------CHHHHHHHHHH-TTBCCBCCCCCG
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEEEeccccccc------CHHHHHHHHHh-CCCCcccccCcc
Confidence 44444556777888888887755432 2 456778999873 22 56889988876 899999987441
Q ss_pred --------------CC-----CCceEEEEEec-CChhHHHHHHHHHHHHHHHhhhc
Q 042816 127 --------------CI-----EPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 127 --------------~~-----~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~~ 162 (163)
.+ ..+.+|+++.. .++++++.+++.|.++++.+.||
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~~~ 389 (393)
T 1mdo_A 334 HTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQGSHH 389 (393)
T ss_dssp GGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC-----
T ss_pred ccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcCCcc
Confidence 00 13489999973 48899999999999999877654
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.6e-10 Score=88.76 Aligned_cols=134 Identities=11% Similarity=0.024 Sum_probs=91.2
Q ss_pred eeEEEEEecCHHHHHHHHHh--h-----cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----
Q 042816 7 FRISVIYSYNNSVLAAAKKL--A-----RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL---- 75 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~--~-----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---- 75 (163)
+|+||+++ ++++++.+... . ..++.++++|.++...|+.-. + +...+.++++.+++.+.|+++
T Consensus 310 ~~lG~v~~-~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~ 383 (457)
T 3tfu_A 310 LSLAATLC-TADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLL---G--QDWRTRITELAAGLTAGLDTARALP 383 (457)
T ss_dssp SCCEEEEE-EHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHH---T--SCHHHHHHHHHHHHHHHHGGGGGST
T ss_pred cceEEEEE-cHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHh---h--hHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 79999999 89999998632 1 125778898888877775211 0 123334444455555555443
Q ss_pred CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
++...++. |.+++++++... +..++++.|++ +||.+.|+ .+++||+... ++++++++++++|.+
T Consensus 384 ~v~~vr~~-G~~~~i~l~~~~------~~~~~~~~l~~-~Gv~v~~~-------~~~lRi~p~~~~t~eei~~~l~~L~~ 448 (457)
T 3tfu_A 384 AVTDVRVC-GAIGVIECDRPV------DLAVATPAALD-RGVWLRPF-------RNLVYAMPPYICTPAEITQITSAMVE 448 (457)
T ss_dssp TEEEEEEC-SSCEEEEESSCC------CHHHHHHHHHH-TTEECCCB-------TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeeeeecC-CeEEEEEECCcc------cHHHHHHHHHH-CCeEEEec-------CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34344444 456777887532 56889998887 79999873 2689998653 388999999999999
Q ss_pred HHHHhhh
Q 042816 155 ISQTCKS 161 (163)
Q Consensus 155 ~~~~~~~ 161 (163)
+++++..
T Consensus 449 ~l~~~~~ 455 (457)
T 3tfu_A 449 VARLVGS 455 (457)
T ss_dssp HHHHC--
T ss_pred HHHHhcc
Confidence 9987654
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-10 Score=88.86 Aligned_cols=142 Identities=13% Similarity=-0.035 Sum_probs=90.0
Q ss_pred CCCceeEEEEEecCHHHHHHHHHh--hc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHH-HHHHHHHHHhhh---
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKL--AR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLR-RLYVKFVAGLRQ--- 74 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~--~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~--- 74 (163)
+..|+|+||+++ ++++++.+... .. .++.++++|.++...|+.-+ + +...+.++ ++.+++.+.|++
T Consensus 295 ~gg~~plG~v~~-~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~---~--~~~~~~~~~~~~~~l~~~L~~l~~ 368 (472)
T 3hmu_A 295 SSGYAPIGGSIV-CDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILE---E--ENILDHVRNVAAPYLKEKWEALTD 368 (472)
T ss_dssp TTTSSCCEEEEE-EHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHH---H--TTHHHHHHHTHHHHHHHHHHGGGG
T ss_pred hcCCcceEEEEE-CHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHH---H--hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334499999999 99999998321 11 25688999998888886321 1 12333333 444444444443
Q ss_pred c-CCccccCCceeEEEeecCCcc-cCCC-----hhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHH
Q 042816 75 L-GIECAKSNGGFYCWADMSGLI-SSYS-----EKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIH 146 (163)
Q Consensus 75 ~-g~~~~~~~~g~~~~~~~~~~~-~~~~-----~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~ 146 (163)
+ ++...++.|. ++++++.... .... ......+++.|++ +||.+.|+. +++||+... +++++++
T Consensus 369 ~~~v~~vr~~G~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g-------~~iRi~p~~~~t~e~i~ 439 (472)
T 3hmu_A 369 HPLVGEAKIVGM-MASIALTPNKASRAKFASEPGTIGYICRERCFA-NNLIMRHVG-------DRMIISPPLVITPAEID 439 (472)
T ss_dssp STTEEEEEEETT-EEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHH-TTBCCEEET-------TEEEECCCTTCCHHHHH
T ss_pred CCCeEEEEecCc-eEEEEEecCccccccccchhHHHHHHHHHHHHH-CCcEEEecC-------CEEEEECCCCCCHHHHH
Confidence 3 3444555665 4555654311 0000 0125678888886 899999851 799999432 3889999
Q ss_pred HHHHHHHHHHHHh
Q 042816 147 VVMERIRRISQTC 159 (163)
Q Consensus 147 ~~~~~l~~~~~~~ 159 (163)
+++++|.+++++.
T Consensus 440 ~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 440 EMFVRIRKSLDEA 452 (472)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=7.1e-10 Score=82.63 Aligned_cols=130 Identities=10% Similarity=0.092 Sum_probs=86.6
Q ss_pred EE-EEEecCHHHHHHHHHhhccc----CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc-cC
Q 042816 9 IS-VIYSYNNSVLAAAKKLARFS----SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA-KS 82 (163)
Q Consensus 9 iG-~~i~~~~~~~~~~~~~~~~~----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-~~ 82 (163)
+| |+++ ++++++.+...+..+ ..+.+.+.++...++.. .+.+++.+ ++++.+.+.|+++|+++. .+
T Consensus 209 ~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~ 280 (347)
T 1jg8_A 209 VGSVVVG-DRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKM------VDRLKEDH-ENARFLALKLKEIGYSVNPED 280 (347)
T ss_dssp SCEEEEE-CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHS------STTHHHHH-HHHHHHHHHHHHHTCBCCGGG
T ss_pred ceEEEEc-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHHHHHHHHhcCceeccCC
Confidence 67 4666 899988887665532 23445555444444321 11222222 456778888877776642 34
Q ss_pred CceeEEEeecCC-cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHHHHHHHHHHHHHHHh
Q 042816 83 NGGFYCWADMSG-LISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 83 ~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l~~~~~~l~~~~~~~ 159 (163)
..+.++|++++. .. +..++.+.|.+ +||.+.|+. ++++|+++. ..+++++++++++|.++++++
T Consensus 281 ~~~~~~~~~~~~~~~------~~~~~~~~l~~-~gi~v~~~~------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 281 VKTNMVILRTDNLKV------NAHGFIEALRN-SGVLANAVS------DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 346 (347)
T ss_dssp CCSSEEEEECTTSSS------CHHHHHHHHHH-HTEECEEEE------TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEcccccC------CHHHHHHHHHH-CCCEEecCC------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 455579999874 22 57889998876 899998752 478999984 358899999999999988654
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-09 Score=85.50 Aligned_cols=146 Identities=14% Similarity=0.134 Sum_probs=97.1
Q ss_pred CCceeEEEEEecCH--------------HHHHHHHHhhcc--c-CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 042816 4 LPGFRISVIYSYNN--------------SVLAAAKKLARF--S-SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYV 66 (163)
Q Consensus 4 ~~G~RiG~~i~~~~--------------~~~~~~~~~~~~--~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 66 (163)
++|.|.||++++++ ++.+.+...... . +++...+.++..++.... ...++...+.+.++++
T Consensus 258 l~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~--~~~~~~~~~~~~~~~~ 335 (483)
T 1rv3_A 258 LRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAM--TPEFKEYQRQVVANCR 335 (483)
T ss_dssp GCCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHh--ChhHHHHHHHHHHHHH
Confidence 57899999999432 244444433221 2 233443444444443211 1234677888899999
Q ss_pred HHHHHhhhcCCccccCC-ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc----CCCCCCCCCCceEEEEEecC-
Q 042816 67 KFVAGLRQLGIECAKSN-GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT----PGSSCHCIEPGWFSFSFTLL- 140 (163)
Q Consensus 67 ~l~~~l~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----pg~~f~~~~~~~iRi~~~~~- 140 (163)
++.+.|++.|+++..+. +++++|++++... .+..++.+.| ++.||.+. ||.... -+++++||++...
T Consensus 336 ~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~g-----~~~~~~~~~L-~~~gI~v~~~~~pg~~~~-~~~~~iRis~~~~~ 408 (483)
T 1rv3_A 336 ALSAALVELGYKIVTGGSDNHLILVDLRSKG-----TDGGRAEKVL-EACSIACNKNTCPGDKSA-LRPSGLRLGTPALT 408 (483)
T ss_dssp HHHHHHHHTTCEEGGGSCSSSEEEEEGGGGT-----CCHHHHHHHH-HHTTEECEEECCSSCSCT-TSCCEEEEECHHHH
T ss_pred HHHHHHHhcCCEeccCCCCCceEEEeccCCC-----CCHHHHHHHH-HhCCcEEecCCCCCCCcC-CCCceEEeecCCcc
Confidence 99999998898887653 4578899986421 1566777666 45999999 887321 2368999999742
Q ss_pred C----hhHHHHHHHHHHHHHHH
Q 042816 141 T----EKDIHVVMERIRRISQT 158 (163)
Q Consensus 141 ~----~~~l~~~~~~l~~~~~~ 158 (163)
+ +++++++++.|.+++..
T Consensus 409 t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 409 SRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHh
Confidence 3 78999999999988865
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-09 Score=84.68 Aligned_cols=145 Identities=12% Similarity=0.150 Sum_probs=89.2
Q ss_pred EEEEecCH-HHHHHHHHhhcc------c-CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 042816 10 SVIYSYNN-SVLAAAKKLARF------S-SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAK 81 (163)
Q Consensus 10 G~~i~~~~-~~~~~~~~~~~~------~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 81 (163)
||++++++ ++++.+...... . ..+...+.++...++.... ++.+++ ..++.+++.+.|++.|+.+..
T Consensus 274 g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~----~~~~~~~l~~~L~~~~~~~~~ 348 (467)
T 1ax4_A 274 GLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE-EEYLHY----RIGQVKYLGDRLREAGIPIQY 348 (467)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC-HHHHHH----HHHHHHHHHHHHHHTTCCBCS
T ss_pred eEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhh-hhHHHH----HHHHHHHHHHHHHhCCCCccc
Confidence 67777336 888877655321 1 2233333322222321100 112222 235667788888777888888
Q ss_pred CCceeEEEeecCCcc---cCCChhhHHHHHHHHHHhcCeEEcC-CCCC-CC----C-----CCceEEEEEec--CChhHH
Q 042816 82 SNGGFYCWADMSGLI---SSYSEKGELELWDKLLNVAKVNVTP-GSSC-HC----I-----EPGWFSFSFTL--LTEKDI 145 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~gi~v~p-g~~f-~~----~-----~~~~iRi~~~~--~~~~~l 145 (163)
|.+|+++|+++.... ...+ .+..++++.|++++||.+.| |+.| +. . ..+++||++.. .+.+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i 427 (467)
T 1ax4_A 349 PTGGHAVFVDCKKLVPQIPGDQ-FPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHM 427 (467)
T ss_dssp SCCSSEEEEESTTTCTTSCGGG-CHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHH
T ss_pred CCCceEEEEehhhhccccccCC-CCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHH
Confidence 899999999932211 0001 15678999885558999999 6542 11 0 13799999982 478999
Q ss_pred HHHHHHHHHHHHHhh
Q 042816 146 HVVMERIRRISQTCK 160 (163)
Q Consensus 146 ~~~~~~l~~~~~~~~ 160 (163)
++++++|.+++++.+
T Consensus 428 ~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 428 DYIADALIGLKEKFA 442 (467)
T ss_dssp HHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999887653
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-09 Score=81.11 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=90.5
Q ss_pred eeEEEEEecCHHHHHHHHHhhc---c-cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Q 042816 7 FRISVIYSYNNSVLAAAKKLAR---F-SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKS 82 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~~---~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~ 82 (163)
..+|++++ ++++++.+..... . .+.+......+..++++.. .++.++.++++++++.+.|+..|+++..|
T Consensus 221 ~~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 294 (359)
T 1svv_A 221 FGEALIIL-NDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNL-----FFELGAHSNKMAAILKAGLEACGIRLAWP 294 (359)
T ss_dssp SCEEEEEC-SGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTH-----HHHHHHHHHHHHHHHHHHHHHTTCCBSSC
T ss_pred CceEEEEE-cccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHhccCCeEEccC
Confidence 45789988 8888777765421 1 1223233333445666532 36778888999999999994348988888
Q ss_pred CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 83 NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
.+++++|++++ .++++.|++++||.+.+.. ...++++||+++. .+++++++++++|.+++++.
T Consensus 295 ~~~~~~~~~~~-----------~~~~~~l~~~~gi~v~~~~---~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 295 SASNQLFPILE-----------NTMIAELNNDFDMYTVEPL---KDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp CSSSEECBEEE-----------HHHHHHHTTTEECEEEEEE---TTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred CccceEEEEcC-----------HHHHHHHHHhcCEEEEecc---cCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 89999998765 3678888874499992210 1236799998763 48899999999999887653
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.3e-09 Score=81.71 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=96.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--------------cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--------------SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVK 67 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (163)
||.+| |+||++++++++++.+...... +.++.+.+.++...++.- +...+..++..++
T Consensus 215 ~~~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~-------~~~~~~~~~~~~~ 286 (399)
T 2oga_A 215 LGCFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHL-------DSWNGRRSALAAE 286 (399)
T ss_dssp SCCSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTH-------HHHHHHHHHHHHH
T ss_pred CCcCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 67779 9999999448998888765432 234556666555555432 2334445566778
Q ss_pred HHHHhhhc-CCccc-cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-----------C------
Q 042816 68 FVAGLRQL-GIECA-KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-----------I------ 128 (163)
Q Consensus 68 l~~~l~~~-g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-----------~------ 128 (163)
+.+.|+++ |+++. .|+++.++|+.++... .+..++.+.|.+ +||.+.++..... .
T Consensus 287 l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~ 360 (399)
T 2oga_A 287 YLSGLAGLPGIGLPVTAPDTDPVWHLFTVRT-----ERRDELRSHLDA-RGIDTLTHYPVPVHLSPAYAGEAPPEGSLPR 360 (399)
T ss_dssp HHHHTTTCTTCBCCCCCTTEECCCSSEEEEC-----SSHHHHHHHHHH-TTBCCBCSCSSCGGGSHHHHTTSCCTTSCHH
T ss_pred HHHHhccCCCccccCCCCCCcceeEEEEEEC-----CCHHHHHHHHHH-CCCceecCCCCccccchhhcccCCCCCCChh
Confidence 88888887 77664 3556666764443211 156788888876 8999988532110 0
Q ss_pred ----CCceEEEEEec-CChhHHHHHHHHHHHHHHHhh
Q 042816 129 ----EPGWFSFSFTL-LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 129 ----~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~ 160 (163)
..+.+||++.. .++++++.+++.|.+++++++
T Consensus 361 ~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l~ 397 (399)
T 2oga_A 361 AESFARQVLSLPIGPHLERPQALRVIDAVREWAERVD 397 (399)
T ss_dssp HHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 02689999863 488999999999999887654
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.6e-10 Score=86.86 Aligned_cols=140 Identities=14% Similarity=0.077 Sum_probs=93.5
Q ss_pred c-eeEEEEEecCHHHHHHHHHhh---------cccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 6 G-FRISVIYSYNNSVLAAAKKLA---------RFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 6 G-~RiG~~i~~~~~~~~~~~~~~---------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
| +|+||+++ ++++++.+.... ..++.++++|.++...|+.-+ + +...+.++++.+++.+.|+.+
T Consensus 296 G~~plg~v~~-~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~---~--~~~~~~~~~~~~~l~~~L~~l 369 (476)
T 3i5t_A 296 GYVPLGGLAI-SEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELME---R--EGIVDQAREMADYFAAALASL 369 (476)
T ss_dssp TSSCCEEEEE-CHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHH---H--TTHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCeEEEEE-CHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHH---h--HHHHHHHHHHHHHHHHHHHHH
Confidence 7 99999999 999999987642 135788999998888886431 1 234445555556666655543
Q ss_pred ----CCccccCCceeEEEeecCCccc-CCCh----hhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhHH
Q 042816 76 ----GIECAKSNGGFYCWADMSGLIS-SYSE----KGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKDI 145 (163)
Q Consensus 76 ----g~~~~~~~~g~~~~~~~~~~~~-~~~~----~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~l 145 (163)
.+...++.|. ++++++..... .... .....+++.|++ +||.+.|. .+++||+.. .++++++
T Consensus 370 ~~~~~v~~v~~~G~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~-------g~~iRi~p~l~~t~e~i 440 (476)
T 3i5t_A 370 RDLPGVAETRSVGL-VGCVQCLLDPTRADGTAEDKAFTLKIDERCFE-LGLIVRPL-------GDLCVISPPLIISRAQI 440 (476)
T ss_dssp TTSTTEEEEEEETT-EEEEEECCC-----CCHHHHHHHHHHHHHHHH-TTEECEEE-------TTEEEECCCTTCCHHHH
T ss_pred hcCCCeEEEEecCc-eeEEEEecCccccccccchhHHHHHHHHHHHH-CCCEEEec-------CCEEEEECCCCCCHHHH
Confidence 2444455555 55667654210 0000 025678888876 89999983 178999943 2399999
Q ss_pred HHHHHHHHHHHHHhh
Q 042816 146 HVVMERIRRISQTCK 160 (163)
Q Consensus 146 ~~~~~~l~~~~~~~~ 160 (163)
++++++|.++++++.
T Consensus 441 ~~~l~~l~~~l~~~~ 455 (476)
T 3i5t_A 441 DEMVAIMRQAITEVS 455 (476)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-09 Score=82.86 Aligned_cols=144 Identities=14% Similarity=0.077 Sum_probs=91.5
Q ss_pred CCC-CceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH----------
Q 042816 2 LSL-PGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKF---------- 68 (163)
Q Consensus 2 ~~~-~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l---------- 68 (163)
|+. +|+|+||++++++++++.+...... .+++++.|.++...+++.. ..+++..+......+++
T Consensus 280 ~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~~---~r~~~~~~~~~~l~~~l~~~~~v~~~~ 356 (464)
T 1ibj_A 280 IAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA---LRIEKQQENARKIAMYLSSHPRVKKVY 356 (464)
T ss_dssp TTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHTCTTCCEEE
T ss_pred ccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHH---HHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence 444 4899999999436888888776642 4678888988888887642 22222222222222222
Q ss_pred HHHhhhc-CCccccCC---ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCC------------CCCC-----
Q 042816 69 VAGLRQL-GIECAKSN---GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGS------------SCHC----- 127 (163)
Q Consensus 69 ~~~l~~~-g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~------------~f~~----- 127 (163)
++.|+++ ++++.+++ .|.++|++++.. .....+.+.|.. .||.+.+|. .+..
T Consensus 357 ~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~------~~~~~~~~~L~~-~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~ 429 (464)
T 1ibj_A 357 YAGLPDHPGHHLHFSQAKGAGSVFSFITGSV------ALSKHLVETTKY-FSIAVSFGSVKSLISMPCFMSHASIPAEVR 429 (464)
T ss_dssp CTTSTTSTTHHHHTTTCSCCCSEEEEECSCH------HHHHHHHHHCSS-SEECSCCCSSSCEEECTTTTTTCSCCSSSS
T ss_pred CCCCCCCcchHHHhccCCCCceEEEEEECCH------HHHHHHHHhcCc-ceEeecCCCCceeeecccccccccCCHHHH
Confidence 2334444 55555554 244677777531 123457776654 799998885 2221
Q ss_pred ----CCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 128 ----IEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 128 ----~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
..++++|||++. |+++++++.|.+++++
T Consensus 430 ~~~g~~~~~iRlsvg~---edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 430 EARGLTEDLVRISAGI---EDVDDLISDLDIAFKT 461 (464)
T ss_dssp SSSSCCTTCEEEECCS---SCHHHHHHHHHHHHHS
T ss_pred HhcCCCcCeEEEEeCC---CCHHHHHHHHHHHHhh
Confidence 125799999996 8999999999998865
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-09 Score=80.63 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=83.9
Q ss_pred CCCCCceeE-EEEEecCHHHHH-HHHHhhccc---CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 1 DLSLPGFRI-SVIYSYNNSVLA-AAKKLARFS---SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 1 ~~~~~G~Ri-G~~i~~~~~~~~-~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
.|+.||+|+ ||+++ ++++++ .+......+ +.+++.|.++...++.. ..++++. .++.+.+.+.|+++
T Consensus 211 ~~~~~g~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~----~~~~~~l~~~l~~~ 282 (398)
T 2rfv_A 211 YINGHGDVIGGIIVG-KQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTL---GIRMERH----CENALKIARFLEGH 282 (398)
T ss_dssp TTTCSSCCCCEEEEE-CHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTH---HHHHHHH----HHHHHHHHHHHHTC
T ss_pred cccCCCCceEEEEEE-CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhhH---HHHHHHH----HHHHHHHHHHHHcC
Confidence 378899999 99999 888877 565444433 67888898888888764 3434433 33445555555442
Q ss_pred ---------------CCccccC----CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC----------
Q 042816 76 ---------------GIECAKS----NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH---------- 126 (163)
Q Consensus 76 ---------------g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~---------- 126 (163)
++++..| .++++ +++++..- .+...+.+.+.. .|+.+.+|..|.
T Consensus 283 ~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~-~~~~~~~~-----~~~~~l~~~~~~-~~i~~~~G~~~~li~~~~~~~~ 355 (398)
T 2rfv_A 283 PSITRVYYPGLSSHPQYELGQRQMSLPGGII-SFEIAGGL-----EAGRRMINSVEL-CLLAVSLGDTETLIQHPASMTH 355 (398)
T ss_dssp TTEEEEECTTSTTSTTHHHHHHHCSSCCSEE-EEEETTHH-----HHHHHHHTTCSS-SEECSCCSSSSCEEECHHHHTS
T ss_pred CCeeEEECCCCCCCccHHHHHhhCCCCceEE-EEEEcCCH-----HHHHHHHHhCCc-ceeccCCCCcceeeeccccccc
Confidence 2333333 35555 44887410 123334333322 488888887652
Q ss_pred -----------CCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 127 -----------CIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 127 -----------~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
...++.+|||++. +..++.++.+.+++++
T Consensus 356 ~~~~~~~~~~~g~~~~~iRls~~~---~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 356 SPVAPEERLKAGITDGLIRLSVGL---EDPEDIINDLEHAIRK 395 (398)
T ss_dssp SSSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHHh
Confidence 0126899999986 3344456666665554
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.03 E-value=4.2e-10 Score=85.87 Aligned_cols=138 Identities=14% Similarity=0.085 Sum_probs=97.8
Q ss_pred CCceeE-EEEEecCHHHHHHHHHhh-----------------------c--ccCCChHHHHHHHHhcCChHHHHHHHHHH
Q 042816 4 LPGFRI-SVIYSYNNSVLAAAKKLA-----------------------R--FSSVSAPSQNLLVSMLSDTKFVQKFININ 57 (163)
Q Consensus 4 ~~G~Ri-G~~i~~~~~~~~~~~~~~-----------------------~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 57 (163)
.+|.|+ ||+++ ++++++.+.... . ..+++.+.+.++..+++.-. +..+++.
T Consensus 230 ~~g~~~~g~l~~-~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~ 306 (416)
T 1qz9_A 230 NGGPGSQAFVWV-SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFA--QTDMASL 306 (416)
T ss_dssp CCCTTCCCEEEE-CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHT--TSCHHHH
T ss_pred CCCCCCeEEEEE-CHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHH--hcCHHHH
Confidence 357777 99999 777766554320 1 12456666665555554211 1345778
Q ss_pred HHHHHHHHHHHHHHhhhc----CCccccCC----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCC
Q 042816 58 RERLRRLYVKFVAGLRQL----GIECAKSN----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE 129 (163)
Q Consensus 58 ~~~~~~~~~~l~~~l~~~----g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~ 129 (163)
++.++++++++.+.|++. |+++..+. .+.++|++++ +..++.+.|.+ +||.+.+ . .
T Consensus 307 ~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~l~~-~gi~~~~----~--~ 370 (416)
T 1qz9_A 307 RRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP---------EGYAVIQALID-RGVIGDY----R--E 370 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT---------THHHHHHHHHT-TTEECEE----E--T
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC---------CHHHHHHHHHh-CCcEecc----C--C
Confidence 888899999999999886 78877664 2456888887 35788888876 7998743 1 2
Q ss_pred CceEEEEEe--cCChhHHHHHHHHHHHHHHHhh
Q 042816 130 PGWFSFSFT--LLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 130 ~~~iRi~~~--~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
++++||+++ ..++++++++++.|.+++++..
T Consensus 371 ~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~~ 403 (416)
T 1qz9_A 371 PRIMRFGFTPLYTTFTEVWDAVQILGEILDRKT 403 (416)
T ss_dssp TTEEEEECCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEeCcccCCCHHHHHHHHHHHHHHHhccc
Confidence 689999997 4589999999999999887643
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-08 Score=77.30 Aligned_cols=144 Identities=11% Similarity=0.071 Sum_probs=96.0
Q ss_pred CCCCceeEEEEEecCHH-H--HHHHHHhhcc-------------cC----CChHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNS-V--LAAAKKLARF-------------SS----VSAPSQNLLVSMLSDTKFVQKFININRERL 61 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~-~--~~~~~~~~~~-------------~~----~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 61 (163)
.+++|.|+||+++ +++ + ++.+...... .+ .+.+ +.++ ++.. .+++++.++.+
T Consensus 188 K~l~g~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~a~--~~~~----~~~l~~~~~~~ 259 (388)
T 1b9h_A 188 KLMTAGEGGAVVF-PDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEF-SASV--LRAQ----LARLDEQIAVR 259 (388)
T ss_dssp SSSCSSSCEEEEE-CTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHH-HHHH--HHHH----HTTHHHHHHHH
T ss_pred CcccCCCeEEEEE-CCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHH-HHHH--HHHH----HHHHHHHHHHH
Confidence 5677889999999 554 6 5666543321 01 2222 2222 2111 23456677888
Q ss_pred HHHHHHHHHHhhhc-CCcccc------CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC------
Q 042816 62 RRLYVKFVAGLRQL-GIECAK------SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI------ 128 (163)
Q Consensus 62 ~~~~~~l~~~l~~~-g~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~------ 128 (163)
+++++++.+.|+++ |+++.. +.+++++|++++... ..+..++.+.|.+ +||.+.++..-...
T Consensus 260 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~ 334 (388)
T 1b9h_A 260 DERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT----EERRNALVDRLVE-AGLPAFAAFRAIYRTDAFWE 334 (388)
T ss_dssp HHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC----HHHHHHHHHHHHH-TTCCEEECCCCGGGSHHHHH
T ss_pred HHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcC----cccHHHHHHHHHH-CCCCcccccCccccChHhHh
Confidence 88999999999988 877765 466889999998520 0156789988876 89999887532100
Q ss_pred ---------------------CCceEEEEEec-C-ChhHHHHHHHHHHHHHHH
Q 042816 129 ---------------------EPGWFSFSFTL-L-TEKDIHVVMERIRRISQT 158 (163)
Q Consensus 129 ---------------------~~~~iRi~~~~-~-~~~~l~~~~~~l~~~~~~ 158 (163)
..+.+||++.. . ++++++..++.|.+++++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 335 LGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp SSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 02368999865 5 678999999999887754
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-09 Score=83.38 Aligned_cols=94 Identities=13% Similarity=0.048 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEE--cCCCCCCCC
Q 042816 52 KFININRERLRRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNV--TPGSSCHCI 128 (163)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v--~pg~~f~~~ 128 (163)
+.+++..+.+.++++++.+.|+++ |+++..+. .+|.++.+... .+..++++.|.+ +||.+ .++..|.
T Consensus 340 ~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~------~~~~~~~~~L~~-~gi~v~~~~~~~~~-- 409 (438)
T 1wyu_A 340 EGLREVALKSVEMAHKLHALLLEVPGVRPFTPK-PFFNEFALALP------KDPEAVRRALAE-RGFHGATPVPREYG-- 409 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS-SBCSEEEEECS------SCHHHHHHHHHH-TTCCCCEECCTTSC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC-CeEEEEEEeCC------CCHHHHHHHHHH-CCceeccccccccC--
Confidence 346788888999999999999998 99887654 33332233211 157889999887 79999 7777665
Q ss_pred CCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 129 EPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 129 ~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
++++|||+.. .+.++++.+++.|.+++
T Consensus 410 -~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 410 -ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp -SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred -CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 6899999983 27889999999887753
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.5e-09 Score=79.76 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=92.6
Q ss_pred CCCCceeEEEEEecC-HHHHHHHHHhhccc-----CC------ChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYN-NSVLAAAKKLARFS-----SV------SAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFV 69 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~-~~~~~~~~~~~~~~-----~~------s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (163)
++++|.|+||+++ + +++++.+....... .. ..+.+.+++..+.. .+.++...+...++.+++.
T Consensus 200 K~l~~~~~G~~v~-~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~----~~~~~~~~~~~~~~~~~l~ 274 (424)
T 2po3_A 200 KAVNAFEGGAVVT-DDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS----LDAFPEVIDRNRRNHAAYR 274 (424)
T ss_dssp SSSCCSSCEEEEE-SCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCeEEEe-CCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 6788899999999 6 89999887765421 00 01223333333322 2345566777777888888
Q ss_pred HHhhhc-CCcccc-CCce---eEEE-eecCC---cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC------------
Q 042816 70 AGLRQL-GIECAK-SNGG---FYCW-ADMSG---LISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI------------ 128 (163)
Q Consensus 70 ~~l~~~-g~~~~~-~~~g---~~~~-~~~~~---~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~------------ 128 (163)
+.|+++ |+++.. |+++ +++| ++++. .. +..++.+.|.+ +||.+.+. |...
T Consensus 275 ~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~l~~~L~~-~gI~v~~~--~~~~~~~~~~~~~~g~ 345 (424)
T 2po3_A 275 EHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGI------HRDLVMEVLKA-EGVHTRAY--FSPGCHELEPYRGQPH 345 (424)
T ss_dssp HHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSS------CHHHHHHHHHH-TTEECBCT--TCSCGGGSTTTTTSCC
T ss_pred HHhccCCCccccCCCCCCccccEEEEEEECCccchh------hHHHHHHHHHH-CCCceecc--cCCccccchhhhhcCC
Confidence 999887 777765 4444 3443 67763 22 56788887765 89999872 2200
Q ss_pred --CCce-------EEEEE-ecCChhHHHHHHHHHHHHHHHhh
Q 042816 129 --EPGW-------FSFSF-TLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 129 --~~~~-------iRi~~-~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
.++. +|+++ ...++++++.+++.|.+++++..
T Consensus 346 ~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~ 387 (424)
T 2po3_A 346 APLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRGR 387 (424)
T ss_dssp CCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence 1233 55552 23488999999999998886643
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-10 Score=91.25 Aligned_cols=142 Identities=11% Similarity=0.058 Sum_probs=90.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHH-----hhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKK-----LAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~-----~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+|. |+|+||+++ ++++++.+.. ... .++.|+++|.++...|+.-. + +...+.+.++.+++.+.|++
T Consensus 302 lg~-G~piG~v~~-~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~---~--~~~~~~~~~~~~~l~~~L~~ 374 (465)
T 2yky_A 302 IGG-GMSFGAFGG-RRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIY---T--RQAASDLSASGDRFRANLNR 374 (465)
Confidence 454 899999999 8999998876 111 25778888888776665321 1 12333333344444444433
Q ss_pred ----cCCccccCCceeEEEeecCC-cccC------CChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChh
Q 042816 75 ----LGIECAKSNGGFYCWADMSG-LISS------YSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEK 143 (163)
Q Consensus 75 ----~g~~~~~~~~g~~~~~~~~~-~~~~------~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~ 143 (163)
+++....+..|.++|+.++. .... .+......+++.|++ +||++.|+. |.. +++.. +++
T Consensus 375 ~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~GV~v~p~~-~~~-------~s~~~-t~e 444 (465)
T 2yky_A 375 IAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLR-KGIYLAPRG-MYA-------LSLEI-ADA 444 (465)
Confidence 23333345567788888764 1100 001124678888886 899999975 331 66654 889
Q ss_pred HHHHHHHHHHHHHHHhh
Q 042816 144 DIHVVMERIRRISQTCK 160 (163)
Q Consensus 144 ~l~~~~~~l~~~~~~~~ 160 (163)
++++++++|.+++++++
T Consensus 445 did~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 445 GRDAFAEALADFIGEQR 461 (465)
Confidence 99999999999988764
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.2e-09 Score=81.63 Aligned_cols=132 Identities=15% Similarity=0.094 Sum_probs=92.3
Q ss_pred eEEEEEecCHHHHHHHH-----Hhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----
Q 042816 8 RISVIYSYNNSVLAAAK-----KLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----- 75 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~-----~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----- 75 (163)
|+||+++ ++++++.+. .... .++.+++.|.++..+|+.. .+ +...+.++++.+++.+.|++.
T Consensus 303 ~iG~~~~-~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~ 376 (449)
T 2cjg_A 303 QVCGVMA-GRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVI---EA--EGLFERAVQHGKYLRARLDELAADFP 376 (449)
T ss_dssp SSEEEEE-CGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHH---HH--HTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred cEEEEEE-CHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 8999999 888877522 1111 2567889999888888632 11 234556666677777777653
Q ss_pred C-CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHH
Q 042816 76 G-IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIR 153 (163)
Q Consensus 76 g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~ 153 (163)
+ +...++.|. +++++++.. .+..++++.|++ +||.+.|+. ++++|++++. ++++++++++++|.
T Consensus 377 ~~~~~~~~~g~-~~~~~~~~~------~~~~~~~~~l~~-~Gv~v~~~g------~~~iRi~~~~~~t~e~i~~~l~~l~ 442 (449)
T 2cjg_A 377 AVVLDPRGRGL-MCAFSLPTT------ADRDELIRQLWQ-RAVIVLPAG------ADTVRFRPPLTVSTAEIDAAIAAVR 442 (449)
T ss_dssp TTSEEEEEETT-EEEEECSSH------HHHHHHHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CceeeEeeccE-EEEEEECCh------HHHHHHHHHHHH-CCeEEecCC------CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 2 444556655 456788752 156789999986 899999862 5899997653 48999999999999
Q ss_pred HHHHHh
Q 042816 154 RISQTC 159 (163)
Q Consensus 154 ~~~~~~ 159 (163)
++++++
T Consensus 443 ~~l~~~ 448 (449)
T 2cjg_A 443 SALPVV 448 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.8e-08 Score=73.49 Aligned_cols=141 Identities=11% Similarity=0.101 Sum_probs=95.6
Q ss_pred eeEEEEEecCHHHHHHHHHhhc-----------------------c-cCCChHHHHHHHHhcCChHHHHHH-HHHHHHHH
Q 042816 7 FRISVIYSYNNSVLAAAKKLAR-----------------------F-SSVSAPSQNLLVSMLSDTKFVQKF-ININRERL 61 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~~-----------------------~-~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~~ 61 (163)
..+|++++ ++++++.+..... + .+++...+.++..+++.- .+. ++...+.+
T Consensus 205 ~g~g~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~---~~~g~~~~~~~~ 280 (379)
T 3ke3_A 205 PCAGLVML-SAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEA---KEIGFDILRDAQ 280 (379)
T ss_dssp CCEEEEEE-CHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHH---HHHCHHHHHHHH
T ss_pred CceEEEEE-CHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHH---HHhcHHHHHHHH
Confidence 35899999 8998887764211 0 145556666666665432 232 57888888
Q ss_pred HHHHHHHHHHhhhcCCccccCC---ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC---CCCceEEE
Q 042816 62 RRLYVKFVAGLRQLGIECAKSN---GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC---IEPGWFSF 135 (163)
Q Consensus 62 ~~~~~~l~~~l~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~---~~~~~iRi 135 (163)
+++.+++.+.|+++|+++..+. ++....+..+. ....+.+.|.+ +||.+.||..+.. ...+.+||
T Consensus 281 ~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~L~~-~Gi~v~~g~~~~~~~~~~~~~lRi 351 (379)
T 3ke3_A 281 WELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTER--------DDMHKGSAFAE-AGLQIAAGVPLKVGEPDNFKTFRL 351 (379)
T ss_dssp HHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSC--------HHHHSSHHHHH-TTCCCEECCCCSSCCCTTCCEEEE
T ss_pred HHHHHHHHHHHHHcCCEecCCccccCceEEEEccCC--------cchHHHHHHHH-CCeEEeCCccccccccCcCCEEEE
Confidence 9999999999999888776543 22222233332 12233555654 8999999986643 12679999
Q ss_pred EEec-CChhHHHHHHHHHHHHHHHhh
Q 042816 136 SFTL-LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 136 ~~~~-~~~~~l~~~~~~l~~~~~~~~ 160 (163)
++.. ++.++++.+++.|.++++++.
T Consensus 352 s~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 352 GLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp ECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred eCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 9863 377899999999999988764
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-08 Score=78.46 Aligned_cols=141 Identities=15% Similarity=0.089 Sum_probs=94.0
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc-cc------CCC---------hHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR-FS------SVS---------APSQNLLVSMLSDTKFVQKFININRERLRRLY 65 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~-~~------~~s---------~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 65 (163)
++.++.++||+++ +++.......... .+ +.+ ..++.++...+.. ..+++..+...++.
T Consensus 281 ~l~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~-----~~~~~~~~~~~~~~ 354 (497)
T 3mc6_A 281 YGFAPKGSSVIMY-RNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGE-----NGYIESCQEIVGAA 354 (497)
T ss_dssp TTCCCSSCEEEEC-SSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred hcCCCCCceeEEe-cCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhH-----HHHHHHHHHHHHHH
Confidence 4568899999999 4443332211111 11 001 2335555555533 33466777778889
Q ss_pred HHHHHHhhh-c-CCccc-cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCCh
Q 042816 66 VKFVAGLRQ-L-GIECA-KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTE 142 (163)
Q Consensus 66 ~~l~~~l~~-~-g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~ 142 (163)
+++.+.|++ + |+++. +|.++++.| ..+. .+..++.+.|.+ +||.+.++.. +..+|++++..+.
T Consensus 355 ~~l~~~L~~~~~g~~~~~~~~~~~v~~-~~~~-------~~~~~l~~~L~~-~Gi~v~~~~~-----~~~~ri~~~~~t~ 420 (497)
T 3mc6_A 355 MKFKKYIQENIPDLDIMGNPRYSVISF-SSKT-------LNIHELSDRLSK-KGWHFNALQK-----PVALHMAFTRLSA 420 (497)
T ss_dssp HHHHHHHHHSCTTCEECSCCCSSEEEE-ECTT-------TTHHHHHHHHHT-TTCBCEECCS-----SCCEEEECCTTTT
T ss_pred HHHHHHHHhcCCCEEEecCCCeeEEEE-eCCC-------CCHHHHHHHHHh-CCEEEecCCC-----CCeEEEEEeCCCH
Confidence 999999999 4 88876 456665555 4443 267889998876 7999876532 3468999987688
Q ss_pred hHHHHHHHHHHHHHHHhhhc
Q 042816 143 KDIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 143 ~~l~~~~~~l~~~~~~~~~~ 162 (163)
++++++++.|.+++++++.+
T Consensus 421 e~i~~~~~~L~~~l~~~~~~ 440 (497)
T 3mc6_A 421 HVVDEICDILRTTVQELKSE 440 (497)
T ss_dssp CTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999877543
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-09 Score=84.70 Aligned_cols=100 Identities=16% Similarity=0.234 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhhhcCCccccCCceeEEEeecCC---cccCCChhhHHHHHHHHHHhcCeEEcCCCCC--CC-C----
Q 042816 59 ERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSG---LISSYSEKGELELWDKLLNVAKVNVTPGSSC--HC-I---- 128 (163)
Q Consensus 59 ~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f--~~-~---- 128 (163)
+...++.+++.+.|++.|+.+. |.+++++|++++. ...... .+...+++.|++++||.+.|+..| +. +
T Consensus 328 ~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~ 405 (467)
T 2oqx_A 328 AYRIAQVQYLVDGLEEIGVVCQ-QAGGHAAFVDAGKLLPHIPADQ-FPAQALACELYKVAGIRAVEIGSFLLGRDPKTGK 405 (467)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEE-EECSSCEEEEHHHHSTTSCGGG-CHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCS
T ss_pred HHHHHHHHHHHHHHHHCCCeee-cCCceEEEEechhhcccCCccc-ccHHHHHHHHHHhcCceecccccccccccccccc
Confidence 4456778888899988888888 8899999999853 110000 025567888845589999995432 11 0
Q ss_pred ----CCceEEEEEec--CChhHHHHHHHHHHHHHHHhh
Q 042816 129 ----EPGWFSFSFTL--LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 129 ----~~~~iRi~~~~--~~~~~l~~~~~~l~~~~~~~~ 160 (163)
..+++|++++. .+++++++++++|.+++++.+
T Consensus 406 ~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 406 QLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp BCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred cccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 13799999983 388999999999999987654
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.6e-08 Score=76.94 Aligned_cols=142 Identities=13% Similarity=0.080 Sum_probs=93.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhh---------cc--c-CCChH---HHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLA---------RF--S-SVSAP---SQNLLVSMLSDTKFVQKFININRERLRRLYV 66 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~---------~~--~-~~s~~---~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 66 (163)
++.+|.++||+++.++.+........ .. . +.+.. .+.++...+. ...+++..+...++++
T Consensus 313 ~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~-----~~~~~~~~~~~~~~~~ 387 (514)
T 3mad_A 313 YGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLG-----EEGYLDATRRILQAAD 387 (514)
T ss_dssp TTCCCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred ccCCCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHH
Confidence 34678899999994444432211000 00 1 12222 2333333332 3445777888888999
Q ss_pred HHHHHhhhc-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec--CChh
Q 042816 67 KFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL--LTEK 143 (163)
Q Consensus 67 ~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~--~~~~ 143 (163)
++.+.|+++ |+++..+..+ ++|+..+.. +..++.+.|.+ +||.+ +|..| ++++|++++. .+++
T Consensus 388 ~l~~~L~~~~g~~~~~~~~~-~~~~~~~~~-------~~~~l~~~L~~-~Gi~v-~g~~~----~~~~Ri~~~~~~~~~e 453 (514)
T 3mad_A 388 RLKAGVRAIPSLKILGDPLW-VIAVASDEL-------NIYQVMEEMAG-RGWRL-NGLHR----PPAFHVALTLRHTEPG 453 (514)
T ss_dssp HHHHHHHTSTTCEESSCCSS-EEEEECSSS-------CHHHHHHHHHT-TTCBC-EEETT----TTEEEEECCGGGGSTT
T ss_pred HHHHHHhhCCCeEEeCCCeE-EEEEeCCCC-------CHHHHHHHHHh-cCCEe-ccCCC----CCeEEEEEecCCCCHH
Confidence 999999998 8888766655 566665432 67889998876 79988 55433 4689999973 2568
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 042816 144 DIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 144 ~l~~~~~~l~~~~~~~~~~ 162 (163)
+++++++.|.+++++++..
T Consensus 454 ~i~~~l~~L~~~l~~~~~~ 472 (514)
T 3mad_A 454 VVDRFLADLQDAVAQVRAH 472 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 9999999999999877643
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.77 E-value=2.8e-07 Score=69.76 Aligned_cols=138 Identities=17% Similarity=0.064 Sum_probs=86.9
Q ss_pred CCCCceeE-EEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 2 LSLPGFRI-SVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 2 ~~~~G~Ri-G~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
|+.||.|+ ||++++++++++.+...... .+.+++.+.++...++.- ....+.+.++.+.+.+.|+++ .+
T Consensus 200 ~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~l~~~l~~~~~l 272 (386)
T 1cs1_A 200 LNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTL-------VPRMELAQRNAQAIVKYLQTQPLV 272 (386)
T ss_dssp TTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred ccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccHH-------HHHHHHHHHHHHHHHHHHhcCCCe
Confidence 68899997 99999445888888776654 346777777666655532 233444556677777776664 22
Q ss_pred c--------------cc----cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-------------
Q 042816 78 E--------------CA----KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH------------- 126 (163)
Q Consensus 78 ~--------------~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~------------- 126 (163)
. +. ...++++ .+.++. ...++.+.| ++.||.+.+++ |+
T Consensus 273 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~l-~~~gi~~~~~~-~g~~~sl~~~~~~~~ 341 (386)
T 1cs1_A 273 KKLYHPSLPENQGHEIAARQQKGFGAML-SFELDG--------DEQTLRRFL-GGLSLFTLAES-LGGVESLISHAATMT 341 (386)
T ss_dssp EEEECTTSTTSTTHHHHHHHCSSCCSEE-EEEESS--------CHHHHHHHH-HTCSSSEEBSC-CCSSSCEEEEGGGTT
T ss_pred EEEECCCCCCCccHHHHHHhcCCCceEE-EEEECC--------CHHHHHHHH-HhCCcceEccc-CCCcceeeecccccc
Confidence 1 11 1125544 445653 235566655 45899887421 11
Q ss_pred ------------CCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 127 ------------CIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 127 ------------~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
...++++|||++. ++.++.++.+.+++++..
T Consensus 342 ~~~~~~~~~~~~g~~~~~iRis~~~---~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 342 HAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRAAN 384 (386)
T ss_dssp TTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHhcCCCCCeEEEEEcc---CCHHHHHHHHHHHHHHhh
Confidence 1125899999986 677888888888887654
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.7e-08 Score=76.31 Aligned_cols=144 Identities=13% Similarity=0.131 Sum_probs=93.7
Q ss_pred ceeEEEEEecCHHH-HHHHHHh---------hcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 6 GFRISVIYSYNNSV-LAAAKKL---------ARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 6 G~RiG~~i~~~~~~-~~~~~~~---------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
|.|+||+++ ++++ ...+... ....+++.+.+.++..+++.. .+++++.++.++++++++.+.|+++
T Consensus 250 g~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~---~~~~~~~~~~~~~~~~~l~~~L~~~ 325 (432)
T 3a9z_A 250 GPRIGALYV-RGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLV---SENCETYEAHMRDIRDYLEERLEAE 325 (432)
T ss_dssp CCSCEEEEE-TTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEE-ccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 567999999 6554 2222211 112456777787776676542 4567889999999999999999886
Q ss_pred -CCccc--cC-----CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC------------------C
Q 042816 76 -GIECA--KS-----NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI------------------E 129 (163)
Q Consensus 76 -g~~~~--~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~------------------~ 129 (163)
|+++. .| ..+..+++.++..- .+..++.+.+ .++.+.+|..+... .
T Consensus 326 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l---~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~ 397 (432)
T 3a9z_A 326 FGKRIHLNSRFPGVERLPNTCNFSIQGSQ-----LRGYMVLAQC---QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVA 397 (432)
T ss_dssp HGGGEEESSCCTTCCBCTTEEEEEECSTT-----CCHHHHHHHC---SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHH
T ss_pred cCCcEEEeCCCCcccCCCCEEEEEeCCCC-----CcHHHHHHHh---cCeEEeccccccCCCCCCccHHHHhcCCCcccc
Confidence 65443 22 12334445555310 1345555543 37888877655321 1
Q ss_pred CceEEEEEecC-ChhHHHHHHHHHHHHHHHhhh
Q 042816 130 PGWFSFSFTLL-TEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 130 ~~~iRi~~~~~-~~~~l~~~~~~l~~~~~~~~~ 161 (163)
++++||+++.. ++++++.+++.|.+++++++.
T Consensus 398 ~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~ 430 (432)
T 3a9z_A 398 RNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEG 430 (432)
T ss_dssp TTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 37999999853 689999999999999987754
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=98.72 E-value=3.4e-07 Score=70.03 Aligned_cols=143 Identities=14% Similarity=0.066 Sum_probs=83.4
Q ss_pred CCCCc-eeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHH--------
Q 042816 2 LSLPG-FRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVA-------- 70 (163)
Q Consensus 2 ~~~~G-~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-------- 70 (163)
||.|| +|+||++++++++++.+...... ...+++.|.++...++.. +..+++..+......+++.+
T Consensus 215 ~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l---~~r~~~~~~n~~~l~~~l~~~~~v~~~~ 291 (403)
T 3cog_A 215 MNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTL---HVRMEKHFKNGMAVAQFLESNPWVEKVI 291 (403)
T ss_dssp TTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred ccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 56666 58999999558898888776654 346788888887777764 33333333322222222222
Q ss_pred --Hhhhc-CCccccCC----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc-------------CCCCCC----
Q 042816 71 --GLRQL-GIECAKSN----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT-------------PGSSCH---- 126 (163)
Q Consensus 71 --~l~~~-g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~-------------pg~~f~---- 126 (163)
.|+++ ++++.+++ |+++.| .++. ...+..+ ++++.||.+. |++.+.
T Consensus 292 ~~~L~~~p~~~~~~~~~~~~g~~~~~-~l~~--------~~~~~~~-~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~ 361 (403)
T 3cog_A 292 YPGLPSHPQHELVKRQCTGCTGMVTF-YIKG--------TLQHAEI-FLKNLKLFTLAESLGGFESLAELPAIMTHASVL 361 (403)
T ss_dssp CTTSTTSTTHHHHHHHCSCCCSEEEE-EESS--------CHHHHHH-HHHHCSSSEECSCCSSSSCEEECTTTTTTTTSC
T ss_pred CCCCCCCCcHHHHHhcCCCCceEEEE-EecC--------CHHHHHH-HHHhCCcceEccCCCCcceeeecccccccccCC
Confidence 23333 44444443 787777 5653 1233444 4445777543 222221
Q ss_pred -------CCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 127 -------CIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 127 -------~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
...++++|||++. ++.++.++.|.+++++..
T Consensus 362 ~~~~~~~g~~~~~iRlSvg~---e~~~d~i~~l~~al~~~~ 399 (403)
T 3cog_A 362 KNDRDVLGISDTLIRLSVGL---EDEEDLLEDLDQALKAAH 399 (403)
T ss_dssp HHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCcCeEEEEeCC---CCHHHHHHHHHHHHHHhh
Confidence 1126899999996 456677777777776543
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=4.2e-07 Score=69.48 Aligned_cols=149 Identities=9% Similarity=0.102 Sum_probs=91.9
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcccC------------C-------C--------hHHHHHHH-HhcCChHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFSS------------V-------S--------APSQNLLV-SMLSDTKFVQKF 53 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~------------~-------s--------~~~q~~~~-~~l~~~~~~~~~ 53 (163)
||. | |+||++++++++++.+........ . . ...+.++. ..+ +.
T Consensus 194 ~~~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l-------~~ 264 (418)
T 2c81_A 194 LTA-G-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQL-------QE 264 (418)
T ss_dssp SCS-S-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHH-------TT
T ss_pred cCC-C-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHH-------HH
Confidence 555 7 999999945888888876543210 0 0 11222221 111 22
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-CCccc-cCCc-eeEEE----eecCCcccCCChhhHHHHHHHHHHhcCeE---EcCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQL-GIECA-KSNG-GFYCW----ADMSGLISSYSEKGELELWDKLLNVAKVN---VTPGS 123 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~-g~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~gi~---v~pg~ 123 (163)
+++..+..+++.+++.+.|+++ |+++. ++++ +.+.| +.++... ..+ .+..++.+.|.+++||. +.+|.
T Consensus 265 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~l~~~L~~~~gI~~~~v~~~~ 342 (418)
T 2c81_A 265 LDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVK-FGG-LNADQFCEILREKLNMGTFYLHPPY 342 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGG-TTT-CCHHHHHHHHHHHHTCCTTTEECCC
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEcccc-ccc-cCHHHHHHHHHHcCCCCcccccccc
Confidence 3455566666788888899887 78776 4666 33333 6666300 000 16788999888734999 88875
Q ss_pred CCCC--------------------------CC--------CceEEEEEec-C-ChhHHHHHHHHHHHHHHHhhh
Q 042816 124 SCHC--------------------------IE--------PGWFSFSFTL-L-TEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 124 ~f~~--------------------------~~--------~~~iRi~~~~-~-~~~~l~~~~~~l~~~~~~~~~ 161 (163)
.... .. .+.+||++.. . ++++++..++.|.++++++..
T Consensus 343 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~~ 416 (418)
T 2c81_A 343 LPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKFCV 416 (418)
T ss_dssp CCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC-
T ss_pred cccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhhcc
Confidence 2100 00 2589999953 4 789999999999998877654
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-08 Score=78.97 Aligned_cols=114 Identities=11% Similarity=0.009 Sum_probs=79.2
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------cCCccccCC----ceeEEEeecCCc
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ-----------LGIECAKSN----GGFYCWADMSGL 95 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----------~g~~~~~~~----~g~~~~~~~~~~ 95 (163)
+++.+...++...++.-. +..+++.++.+.++++++.+.|++ .|+++..|. .|.++|+.++.
T Consensus 333 t~~~~~~~a~~aal~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~- 409 (465)
T 3e9k_A 333 NPPILLVCSLHASLEIFK--QATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV- 409 (465)
T ss_dssp CCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC-
T ss_pred CccHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC-
Confidence 344444555555554321 122788899999999999999987 477777665 35667778773
Q ss_pred ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEE--ecCChhHHHHHHHHHHHHHHHhhh
Q 042816 96 ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSF--TLLTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 96 ~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~--~~~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
+..++.+.|.+ +||.+. +. .++++|+++ ...+.++++.+++.|.+++++...
T Consensus 410 -------~~~~l~~~L~~-~Gi~v~----~~--~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~~~ 463 (465)
T 3e9k_A 410 -------PNKDVFQELEK-RGVVCD----KR--NPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSAET 463 (465)
T ss_dssp -------TTCCHHHHHHT-TTEECE----EE--TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC---
T ss_pred -------CHHHHHHHHHH-CCEEEe----cC--CCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhccc
Confidence 45678888876 799986 22 268999998 334889999999999999876543
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-08 Score=76.61 Aligned_cols=115 Identities=13% Similarity=0.111 Sum_probs=70.2
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccccCCc---eeEEEeecCCcccCCChhhHHH
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECAKSNG---GFYCWADMSGLISSYSEKGELE 106 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~ 106 (163)
+++.+.+.++..+++.. .+++++.++.++++++++.+.|+ . |+++..+.+ +.++++.++.. +..+
T Consensus 262 ~~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 330 (400)
T 3vax_A 262 TLPVPLIMGLAEAAKIF---EAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFEDV-------DAEA 330 (400)
T ss_dssp CCCHHHHHHHHHHHHHH---HHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECTTC-------CHHH
T ss_pred CCCHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeCCC-------CHHH
Confidence 45666666666666532 45678999999999999999999 6 888877665 34566666642 6788
Q ss_pred HHHHHHHhcCeEEcCCCCCCCC-------------C----CceEEEEE-ec-CChhHHHHHHHHHHHHHHH
Q 042816 107 LWDKLLNVAKVNVTPGSSCHCI-------------E----PGWFSFSF-TL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 107 ~~~~l~~~~gi~v~pg~~f~~~-------------~----~~~iRi~~-~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
+.+.|. +||.+.||..|... . ++++||++ +. .+.++++.+++.|.+++++
T Consensus 331 l~~~L~--~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 331 FLVTLK--DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp HHHHHH--HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred HHHHHh--cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 888775 89999999766431 1 48999999 53 3678899999999887754
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-07 Score=72.24 Aligned_cols=138 Identities=11% Similarity=0.042 Sum_probs=90.5
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcccC--CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----C
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARFSS--VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----G 76 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~~~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g 76 (163)
+.++.++||+++.++++++.+......+. .+.+.+.++...+. .+.+++..+.+.++++++.+.|+++ |
T Consensus 300 ~~~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g 374 (456)
T 2z67_A 300 LLTPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG-----SKNYLELVKNQKNSKKLLDELLNDLSKKTG 374 (456)
T ss_dssp HCCCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cCCCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 34568999999956788877733222121 12333444444442 3446788888899999999999887 8
Q ss_pred CccccCCceeEEEeec--CCcccCCChhhHHHHHHHHHHhcCe---EEc------CCCCCCCCCCceEEEEEec-CChhH
Q 042816 77 IECAKSNGGFYCWADM--SGLISSYSEKGELELWDKLLNVAKV---NVT------PGSSCHCIEPGWFSFSFTL-LTEKD 144 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~gi---~v~------pg~~f~~~~~~~iRi~~~~-~~~~~ 144 (163)
+.+.+|+ ++ +++++ +. ...++.+.|.+ .|| .+. +|..+.....+++|+|++. .++++
T Consensus 375 ~~v~~~~-~~-v~~~~~~~~--------~~~~l~~~L~~-~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~ee 443 (456)
T 2z67_A 375 GKFLDVE-SP-IASCISVNS--------DPVEIAAKLYN-LRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTED 443 (456)
T ss_dssp CCBCCCC-CS-SEEEEECSS--------CHHHHHHHHHH-TTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHH
T ss_pred CEecCCC-Ce-EEEEEeccc--------HHHHHHHHHHH-cCCCcceEEeecCccccccccccCcchhhhhhhcCCCHHH
Confidence 8887777 43 44455 32 13678888876 664 443 2444433335799999883 48899
Q ss_pred HHHHHHHHHHHH
Q 042816 145 IHVVMERIRRIS 156 (163)
Q Consensus 145 l~~~~~~l~~~~ 156 (163)
++.+++.|++++
T Consensus 444 id~~l~~L~~~~ 455 (456)
T 2z67_A 444 IVNSVSKLEKIL 455 (456)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=98.66 E-value=3.6e-07 Score=71.70 Aligned_cols=147 Identities=11% Similarity=0.050 Sum_probs=94.8
Q ss_pred CCceeEEEEEecCH--------------HHHHHHHHhhcc---cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 042816 4 LPGFRISVIYSYNN--------------SVLAAAKKLARF---SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYV 66 (163)
Q Consensus 4 ~~G~RiG~~i~~~~--------------~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 66 (163)
+.|.|.|+++++++ ++.+.+++...+ .+++.....+++.++.... ....+...+.+.++++
T Consensus 268 l~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~--~~~~~~~~~~~~~na~ 345 (490)
T 2a7v_A 268 LRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQAC--TPMFREYSLQVLKNAR 345 (490)
T ss_dssp GCSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHH
T ss_pred CccccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHH
Confidence 46788999999332 356666655432 1233333333343443221 1233667778888999
Q ss_pred HHHHHhhhcCCcccc-CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC---CCCceEEEEEec---
Q 042816 67 KFVAGLRQLGIECAK-SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC---IEPGWFSFSFTL--- 139 (163)
Q Consensus 67 ~l~~~l~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~---~~~~~iRi~~~~--- 139 (163)
++.+.|++.|+++.. +.....+|+++.... .+..++.+.|. +.||.+.++..++. ..+..+||+...
T Consensus 346 ~L~~~L~~~G~~v~~~~t~t~lv~vdl~~~g-----~~~~~~~~~L~-~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~ 419 (490)
T 2a7v_A 346 AMADALLERGYSLVSGGTDNHLVLVDLRPKG-----LDGARAERVLE-LVSITANKNTCPGDRSAITPGGLRLGAPALTS 419 (490)
T ss_dssp HHHHHHHHTTCEEGGGSCSSSEEEEECTTTT-----CCHHHHHHHHH-HTTEECEEECCTTCCCSSSCSEEEEESHHHHH
T ss_pred HHHHHHHHcCcEEecCCCCCeEEEEEeCCCC-----CCHHHHHHHHH-hCCeEEecCccCCCCCCCCCCceEeccccccc
Confidence 999999999988864 345678899986421 15566776664 58999986543332 126789997743
Q ss_pred --CChhHHHHHHHHHHHHHHH
Q 042816 140 --LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 140 --~~~~~l~~~~~~l~~~~~~ 158 (163)
.++++++...+.|.+++..
T Consensus 420 ~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 420 RQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 3678899888888887753
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-07 Score=72.52 Aligned_cols=152 Identities=8% Similarity=-0.065 Sum_probs=94.0
Q ss_pred CCCCceeEEEEEecCHHHH-HHHHHhhccc-----------CC---ChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVL-AAAKKLARFS-----------SV---SAPSQNLLVSMLSDTKFVQKFININRERLRRLYV 66 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~-~~~~~~~~~~-----------~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 66 (163)
|+++|.++||+++.+++++ +.+.....+. +. ..+.|.++...+. .+.+++..+.+.++++
T Consensus 263 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg-----~~g~~~~~~~~~~~a~ 337 (452)
T 2dgk_A 263 FGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG-----REGYTKVQNASYQVAA 337 (452)
T ss_dssp TTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred ccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHH
Confidence 6789999999999444432 3331111111 11 2334444444442 3446778888999999
Q ss_pred HHHHHhhhc-CCccccC-----CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-CCCCceEEEEEec
Q 042816 67 KFVAGLRQL-GIECAKS-----NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH-CIEPGWFSFSFTL 139 (163)
Q Consensus 67 ~l~~~l~~~-g~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~-~~~~~~iRi~~~~ 139 (163)
++.+.|+++ ++++..| ..+++ .+.++... ....+..++.+.|.+ .||.+....... ..+.+++|++++.
T Consensus 338 ~l~~~L~~~~~~~~~~~~~~~~~~~~v-~f~~~~~~--~~~~~~~~l~~~L~~-~Gi~v~~~~~~~~~~~~~~lRis~~~ 413 (452)
T 2dgk_A 338 YLADEIAKLGPYEFICTGRPDEGIPAV-CFKLKDGE--DPGYTLYDLSERLRL-RGWQVPAFTLGGEATDIVVMRIMCRR 413 (452)
T ss_dssp HHHHHHHTTSSEEEEEECCTTTBSSEE-EEEECTTC--CCSCCHHHHHHHHHH-TTCBCCEEECSTTCTTCEEEEEECCT
T ss_pred HHHHHHHhCCCeEEecCCCCCCCeEEE-EEEecCcc--cccCCHHHHHHHHHh-cCCeeeeeeCCcccCCeEEEEEEecC
Confidence 999999998 6877643 44544 34554310 000134788888876 798654321111 1125699999985
Q ss_pred -CChhHHHHHHHHHHHHHHHhhhc
Q 042816 140 -LTEKDIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 140 -~~~~~l~~~~~~l~~~~~~~~~~ 162 (163)
.+.++++..++.|.+++++++..
T Consensus 414 ~~t~e~id~li~~l~~~~~~~~~~ 437 (452)
T 2dgk_A 414 GFEMDFAELLLEDYKASLKYLSDH 437 (452)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhC
Confidence 25789999999999988876653
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.64 E-value=3.4e-07 Score=67.75 Aligned_cols=44 Identities=7% Similarity=-0.084 Sum_probs=33.2
Q ss_pred CCCCCcee-EEEEEecCH-HHHHHHHHhhcc-c--CCChHHHHHHHHhcC
Q 042816 1 DLSLPGFR-ISVIYSYNN-SVLAAAKKLARF-S--SVSAPSQNLLVSMLS 45 (163)
Q Consensus 1 ~~~~~G~R-iG~~i~~~~-~~~~~~~~~~~~-~--~~s~~~q~~~~~~l~ 45 (163)
.||.||.| +||+++ ++ ++++.+...... + +.+++.|.++...++
T Consensus 146 ~~~~~~~r~~G~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 194 (331)
T 1pff_A 146 YINGHTDVVAGLVCS-RADIIAKVKSQGIKDITGAIISPHDAWLITRGTL 194 (331)
T ss_dssp TTSSSSSCCCEEEEE-CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEEe-CcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcc
Confidence 37899999 899999 77 999988877655 3 467777776655554
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-06 Score=65.67 Aligned_cols=139 Identities=6% Similarity=-0.057 Sum_probs=89.6
Q ss_pred EEEEEe-cCHHHHHHHHHhhcc--------------c----CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 042816 9 ISVIYS-YNNSVLAAAKKLARF--------------S----SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFV 69 (163)
Q Consensus 9 iG~~i~-~~~~~~~~~~~~~~~--------------~----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (163)
+|++++ +++++++.+...... . ..+.+...++... .+++++..+.++++++++.
T Consensus 189 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~~l~ 261 (375)
T 2fnu_A 189 EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQ-------LKKAPFLMQKREEAALTYD 261 (375)
T ss_dssp SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHH-------HTTHHHHHHHHHHHHHHHH
T ss_pred CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 788887 358888888765421 1 1222222222111 1234567777888899999
Q ss_pred HHhhhc-CCccccC----Cc-eeEEEeecCCcccCCChh-hHHHHHHHHHHhcCeEEcCCCC-------CC-------CC
Q 042816 70 AGLRQL-GIECAKS----NG-GFYCWADMSGLISSYSEK-GELELWDKLLNVAKVNVTPGSS-------CH-------CI 128 (163)
Q Consensus 70 ~~l~~~-g~~~~~~----~~-g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~gi~v~pg~~-------f~-------~~ 128 (163)
+.|+++ |+++..+ .+ ++++|+.++... . +..++.+.|.+ +||.+.++.. |+ .+
T Consensus 262 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~L~~-~gi~v~~~~~p~~~~~~~~~~~~~~~~~ 335 (375)
T 2fnu_A 262 RIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF-----FTCKKLILESLHK-RGILAQVHYKPIYQYQLYQQLFNTAPLK 335 (375)
T ss_dssp HHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG-----GGGHHHHHHHHHH-TTEECBCCCCCGGGSHHHHHHHCCCCCH
T ss_pred HHhhcCCCccccCCCCCCCcceEEEEEEeCccc-----cchHHHHHHHHHH-CCCCccccccccccchhhhcCCCccCCh
Confidence 999988 7777655 23 345577776420 1 46788888865 8999984211 11 00
Q ss_pred -----CCceEEEEEec-CChhHHHHHHHHHHHHHHHhh
Q 042816 129 -----EPGWFSFSFTL-LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 129 -----~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~ 160 (163)
.++++||++.. .+.++++.+++.|.+++++++
T Consensus 336 ~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~ 373 (375)
T 2fnu_A 336 SAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESFK 373 (375)
T ss_dssp HHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 12789999974 378999999999999887764
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-07 Score=71.50 Aligned_cols=141 Identities=12% Similarity=0.063 Sum_probs=87.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc----------------cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF----------------SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLY 65 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~----------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 65 (163)
.+++|.+.||++++++++.+.+...... +..+.+...+ ..... +.+++..+..+++.
T Consensus 206 K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~--~~~~~-----~~~~~~~~~~~~~~ 278 (391)
T 3dr4_A 206 AIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAI--GLAQL-----ERVDEHLAARERVV 278 (391)
T ss_dssp SSSCCBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHH--HHHHH-----HTHHHHHHHHHHHH
T ss_pred CcCCcCCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHH--HHHHH-----HHHHHHHHHHHHHH
Confidence 4567788999999667788877765532 1122222222 22111 22344556666677
Q ss_pred HHHHHHhhhcCCccccC------Ccee-EEEeecCC--cccCCChhhHHHHHHHHHHhcCeEEcCCCCCC---C------
Q 042816 66 VKFVAGLRQLGIECAKS------NGGF-YCWADMSG--LISSYSEKGELELWDKLLNVAKVNVTPGSSCH---C------ 127 (163)
Q Consensus 66 ~~l~~~l~~~g~~~~~~------~~g~-~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~---~------ 127 (163)
+++.+.|++.|+++..+ ..++ .+++.++. .. +..++.+.|.+ +||.+.+|..-. .
T Consensus 279 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~l~~~L~~-~GI~v~~~~~p~~~~~~~~~~~ 351 (391)
T 3dr4_A 279 GWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLST------TRDQVIKDLDA-LGIESRPVFHPMHIMPPYAHLA 351 (391)
T ss_dssp HHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECSSCSS------CHHHHHHHHHH-TTCCCEECCCCGGGSGGGGGGC
T ss_pred HHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECCccch------hHHHHHHHHHH-CCCceeecCCccccChhhhhcC
Confidence 77888887777766544 2333 34666664 22 57889998876 799999875110 0
Q ss_pred ---------CCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 128 ---------IEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 128 ---------~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
...+.+|+++.. .++++++..++.|.+++
T Consensus 352 ~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 352 TDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp CTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred cCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 014578998864 48889998888887653
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.9e-06 Score=64.53 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=75.7
Q ss_pred CCCCceeE-EEEEecCHHHHH-HHHHhhcc---cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 042816 2 LSLPGFRI-SVIYSYNNSVLA-AAKKLARF---SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL- 75 (163)
Q Consensus 2 ~~~~G~Ri-G~~i~~~~~~~~-~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 75 (163)
||.||.|+ ||+++ ++++++ .+...... .+.+++.+.++...++.- ... .+...++.+.+.+.|+++
T Consensus 213 ~~~~~~~~~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~----~~~~~~~~~~l~~~L~~~~ 284 (398)
T 1gc0_A 213 LSGHGDITAGIVVG-SQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL---NLR----MDRHCANAQVLAEFLARQP 284 (398)
T ss_dssp TTCSSSCCCEEEEE-CHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH---HHH----HHHHHHHHHHHHHHHHTCT
T ss_pred cCCCCCCeEEEEEE-ChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchH---HHH----HHHHHHHHHHHHHHHhcCC
Confidence 78899998 99999 777665 45544433 346777777777777653 233 334444555566666553
Q ss_pred --------------CCcccc----CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC---CCCC---------
Q 042816 76 --------------GIECAK----SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP---GSSC--------- 125 (163)
Q Consensus 76 --------------g~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p---g~~f--------- 125 (163)
++++.. ..++++.+ +++. +..+ ...++++.++.+.. |..+
T Consensus 285 ~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~--------~~~~-~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~ 354 (398)
T 1gc0_A 285 QVELIHYPGLASFPQYTLARQQMSQPGGMIAF-ELKG--------GIGA-GRRFMNALQLFSRAVSLGDAESLAQHPASM 354 (398)
T ss_dssp TEEEEEEC----------------CCTTEEEE-EETT--------HHHH-HHHHHHHCSSSEECSCCSCSSCEEECGGGT
T ss_pred CeeEEECCCCCCCcCHHHHHhhCCCCceEEEE-EECC--------CHHH-HHHHHHhCCCceeccCCCCcceeeeccccc
Confidence 122222 24555444 6653 2233 33455557887765 3221
Q ss_pred ---C---------CCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 126 ---H---------CIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 126 ---~---------~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
. ...++.+|||++. ++.++.++.+.+++++
T Consensus 355 ~~~~~~~~~~~~~g~~~~~iRis~g~---~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 355 THSSYTPEERAHYGISEGLVRLSVGL---EDIDDLLADVQQALKA 396 (398)
T ss_dssp TTSSSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHhcCCCCCeEEEEeCc---CCHHHHHHHHHHHHHh
Confidence 0 0125899999986 3445555555555543
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-06 Score=66.16 Aligned_cols=139 Identities=10% Similarity=-0.006 Sum_probs=89.4
Q ss_pred CCCCc-eeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 2 LSLPG-FRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 2 ~~~~G-~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
+|.+| +|+||++++++++.+.+...... .+.+++.+.++...++.- .. ..+...++.+.+.+.|+++ ++
T Consensus 214 lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l---~~----~~~~~~~~~~~l~~~L~~~~~v 286 (392)
T 3qhx_A 214 IGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTL---VL----RMQRHSENAAAVAEFLAEHPAI 286 (392)
T ss_dssp TTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH---HH----HHHHHHHHHHHHHHHHHTCTTE
T ss_pred cCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH---HH----HHHHHHHHHHHHHHHHhcCCCc
Confidence 56666 89999999447888888777653 467777777777777653 22 2344455666777777766 33
Q ss_pred c-cccC----------------CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-------------
Q 042816 78 E-CAKS----------------NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------------- 127 (163)
Q Consensus 78 ~-~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------------- 127 (163)
. +..| ..|..+++.++... .....+...|. ..++.+..|..+..
T Consensus 287 ~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~-----~~~~~~~~~l~-~~~~~~s~G~~~sl~~~~~~~~~~~~~ 360 (392)
T 3qhx_A 287 STVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR-----TAAEQLCAKTN-IFILAESLGSVESLIEHPSAMTHASTA 360 (392)
T ss_dssp EEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH-----HHHHHHHHHCS-SSEECSCCCCSSCEEECGGGTSCGGGB
T ss_pred ceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH-----HHHHHHHHhCC-CceECCCCCCCCceeeCcccccccccC
Confidence 2 2111 12556788887521 25567776554 36788777765321
Q ss_pred -----CCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 128 -----IEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 128 -----~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
..++.+|||++. ++.++.++.+.+++
T Consensus 361 ~~~~g~~~~~iRlSvg~---e~~~~~i~~l~~al 391 (392)
T 3qhx_A 361 GSQLEVPDDLVRLSVGI---EDVADLLDDLKQAL 391 (392)
T ss_dssp TTBCCCCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred HHHcCCCCCeEEEEecc---CCHHHHHHHHHHHh
Confidence 136789999986 46666777776654
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.5e-06 Score=66.77 Aligned_cols=142 Identities=16% Similarity=0.168 Sum_probs=85.8
Q ss_pred CCCCc-eeEEEEEecCHHHHH-HHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 2 LSLPG-FRISVIYSYNNSVLA-AAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 2 ~~~~G-~RiG~~i~~~~~~~~-~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
||.+| +|+||+++ +++.+. .+...... .+.++....++...++. +....+...++.+.+.+.|+++ +
T Consensus 229 l~~~G~~~~G~vv~-~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~r~~~~~~~a~~l~~~L~~~p~ 300 (414)
T 3ndn_A 229 IDGQGRVLGGAILG-DREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLET-------LAIRVQHSNASAQRIAEFLNGHPS 300 (414)
T ss_dssp TTCSSCCCCEEEEE-CHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ccCCCCceEEEEEE-CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 67778 99999999 777766 66654443 23444444444443332 2334445567778888888876 4
Q ss_pred Cc-cccCC----------------ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC------------
Q 042816 77 IE-CAKSN----------------GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------------ 127 (163)
Q Consensus 77 ~~-~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------------ 127 (163)
+. +..|. .|..+|++++.... ....+...|.+.|.. .++.+.+|..+..
T Consensus 301 v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~-~~~~~~~~~~~~l~~-~~~~~s~G~~~sl~~~p~~~~~~~~ 378 (414)
T 3ndn_A 301 VRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED-VAKQRAFEVLDKMRL-IDISNNLGDAKSLVTHPATTTHRAM 378 (414)
T ss_dssp EEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG-GHHHHHHHHHHHCSS-SEECSCCSCSSCEEECGGGTTTCTT
T ss_pred EeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc-ccHHHHHHHHHhCcc-ceEcCCCCCCCceeeCccccccccC
Confidence 32 22221 57789999974200 001245677776643 6778877765431
Q ss_pred ---------CCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 128 ---------IEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 128 ---------~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
..++.+|||++. |+.+..++.|.+++
T Consensus 379 ~~~~~~~~g~~~~~iRlsvG~---e~~~dli~dl~~al 413 (414)
T 3ndn_A 379 GPEGRAAIGLGDGVVRISVGL---EDTDDLIADIDRAL 413 (414)
T ss_dssp HHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred CHHHHHhcCCCCCeEEEEeCc---CCHHHHHHHHHHhh
Confidence 236899999997 45566666666554
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.2e-07 Score=72.15 Aligned_cols=151 Identities=12% Similarity=-0.007 Sum_probs=93.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc-cc-----------CC---ChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR-FS-----------SV---SAPSQNLLVSMLSDTKFVQKFININRERLRRLYV 66 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~-~~-----------~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 66 (163)
|++++.++||+++.+++.+........ +. +. ..+.|.++...+.. +-+....+...++.+
T Consensus 278 ~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~-----~g~~~~~~~~~~~a~ 352 (502)
T 3hbx_A 278 YGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGH-----EGYRNVMENCRENMI 352 (502)
T ss_dssp TTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred ccCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 567888999988855554322211111 10 11 22334333333332 234666777777888
Q ss_pred HHHHHhhhc-CCccccC-CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-CCCceEEEEEec-CCh
Q 042816 67 KFVAGLRQL-GIECAKS-NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-IEPGWFSFSFTL-LTE 142 (163)
Q Consensus 67 ~l~~~l~~~-g~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~iRi~~~~-~~~ 142 (163)
++.+.|+++ ++++..+ ....++.+.++... . .+..++.+.|.+ .||.+........ .+..++||++.. .+.
T Consensus 353 ~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~---~-~~~~~l~~~L~~-~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~ 427 (502)
T 3hbx_A 353 VLREGLEKTERFNIVSKDEGVPLVAFSLKDSS---C-HTEFEISDMLRR-YGWIVPAYTMPPNAQHITVLRVVIREDFSR 427 (502)
T ss_dssp HHHHHHHTTTCEEECSCSSSSSEEEEEESSCS---S-CCHHHHHHHHHT-TTCBCCEEECCTTCTTCEEEEEECCTTCCH
T ss_pred HHHHHHHhCCCEEEEeCCCCceEEEEEecCCC---c-CCHHHHHHHHHh-CCcEEeeccCCcccCCceEEEEEeCCCCCH
Confidence 999999998 4887765 33334555665310 0 155688988876 8998754332221 235799999974 477
Q ss_pred hHHHHHHHHHHHHHHHhhhc
Q 042816 143 KDIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 143 ~~l~~~~~~l~~~~~~~~~~ 162 (163)
++++..++.|.++++.++.+
T Consensus 428 edid~li~~L~~~l~~l~~~ 447 (502)
T 3hbx_A 428 TLAERLVIDIEKVMRELDEL 447 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999887664
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.2e-06 Score=64.16 Aligned_cols=148 Identities=10% Similarity=0.014 Sum_probs=87.5
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhccc--C--------------CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARFS--S--------------VSAPSQNLLVSMLSDTKFVQKFININRERLRRLY 65 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~~--~--------------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 65 (163)
.+++|.|+||++++++++++.+....... . ++.+...++...++ ++++..+.+++++
T Consensus 184 K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~-------~l~~~~~~~~~~~ 256 (394)
T 1o69_A 184 KIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQME-------VLEQRVLKKREIY 256 (394)
T ss_dssp SSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHT-------THHHHHHHHHHHH
T ss_pred ccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 35678899999994489998887765432 1 11122222211122 2445667778888
Q ss_pred HHHHHHhhhcCCccccCC----cee-EEEeecCCcc---------------cCCChhhHHHHHHHHHHhcCeEEcCCCCC
Q 042816 66 VKFVAGLRQLGIECAKSN----GGF-YCWADMSGLI---------------SSYSEKGELELWDKLLNVAKVNVTPGSSC 125 (163)
Q Consensus 66 ~~l~~~l~~~g~~~~~~~----~g~-~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~~~gi~v~pg~~f 125 (163)
+++.+.|++. +++.++. +++ .+++.++... +.....+..++.+.|.+ +||.+++|...
T Consensus 257 ~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~ 334 (394)
T 1o69_A 257 EWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKN-KQIETRPLWKA 334 (394)
T ss_dssp HHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHH-TTCCCBCCCCC
T ss_pred HHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHH-cCCcccccCCc
Confidence 8888888876 5554442 344 3566666310 00000156788888876 89999998532
Q ss_pred CC--CC-C---------------ceEEEEE-ecCChhHHHHHHHHHHHHHHH
Q 042816 126 HC--IE-P---------------GWFSFSF-TLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 126 ~~--~~-~---------------~~iRi~~-~~~~~~~l~~~~~~l~~~~~~ 158 (163)
.. +. . ..+|+.. ...++++++..++.|++++..
T Consensus 335 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~ 386 (394)
T 1o69_A 335 MHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA 386 (394)
T ss_dssp GGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred cccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 10 00 0 2333333 225889999999999988764
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.5e-06 Score=66.52 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=91.1
Q ss_pred CCCCceeEEEEEecCHHH-HHHHHHhhcc--------------------c--CCChHHHHHHHHhcCChHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSV-LAAAKKLARF--------------------S--SVSAPSQNLLVSMLSDTKFVQKFININR 58 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~-~~~~~~~~~~--------------------~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 58 (163)
+++| +++||+++.++.. .+.+.....+ . ....+.+.++...+ + .+.+++..
T Consensus 305 ~~~p-~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~--g---~~g~~~~~ 378 (486)
T 1js3_A 305 LLVN-FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMY--G---VKGLQAYI 378 (486)
T ss_dssp SSCC-SSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHH--H---HHHHHHHH
T ss_pred cCCC-cceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHH--h---HHHHHHHH
Confidence 3455 8999999966654 3333110000 0 12334454444444 2 34567778
Q ss_pred HHHHHHHHHHHHHhhhc-CCccc-cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEE
Q 042816 59 ERLRRLYVKFVAGLRQL-GIECA-KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFS 136 (163)
Q Consensus 59 ~~~~~~~~~l~~~l~~~-g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~ 136 (163)
+.+.++++++.+.|++. |+++. +|..+++.| .++.. .....++.+.|.+ .|+.+.++..|. +.+++|++
T Consensus 379 ~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f-~~~~~-----~~~~~~l~~~L~~-~g~~~~~~~~~~--~~~~lRi~ 449 (486)
T 1js3_A 379 RKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCF-RLKGS-----DGLNEALLERINS-ARKIHLVPCRLR--GQFVLRFA 449 (486)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEE-EESSC-----HHHHHHHHHHHHH-HTSCBCEEEEET--TEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEE-EecCh-----HHHHHHHHHHHHh-cCCEEEEEEEEC--CEEEEEEE
Confidence 88888999999999988 88875 467777665 44321 0125788888877 565443333333 36899999
Q ss_pred Eec--CChhHHHHHHHHHHHHHHHhh
Q 042816 137 FTL--LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 137 ~~~--~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+.. .+.++++.+++.|.++++++.
T Consensus 450 ~~~~~~t~~di~~~~~~l~~~~~~~~ 475 (486)
T 1js3_A 450 ICSRKVESGHVRLAWEHIRGLAAELL 475 (486)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 864 267899999999999887664
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-06 Score=65.96 Aligned_cols=135 Identities=17% Similarity=0.127 Sum_probs=80.3
Q ss_pred CCCCceeE-EEEEecCH-HHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Q 042816 2 LSLPGFRI-SVIYSYNN-SVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-- 75 (163)
Q Consensus 2 ~~~~G~Ri-G~~i~~~~-~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 75 (163)
++.||.|+ ||+++ ++ ++++.+...... .+.+++.+.++...++.- ...+++. .++...+.+.|+++
T Consensus 207 ~~~~~~~~~G~v~~-~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l---~~r~~~~----~~~~~~l~~~l~~~~~ 278 (389)
T 3acz_A 207 INGHGDVIGGVSSA-KTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTL---PIRMQIH----MENGLKVAKFLEQHEK 278 (389)
T ss_dssp TTCSSCCCCEEEEE-SSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH---HHHHHHH----HHHHHHHHHHHHHCTT
T ss_pred ccCCCCceeEEEEE-CcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccHH---HHHHHHH----HHHHHHHHHHHHcCCC
Confidence 78899998 99999 66 898888776653 345666777666777653 2223333 33444455555443
Q ss_pred -------------CCcccc----CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC---C------CCCCC--
Q 042816 76 -------------GIECAK----SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP---G------SSCHC-- 127 (163)
Q Consensus 76 -------------g~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p---g------~~f~~-- 127 (163)
++.+.. ..|+ ++.+.++. ..+..+ ++++.|+.+.+ | ..+..
T Consensus 279 v~~~~~~~L~~~~~~~~~~~~~~g~g~-~~~~~l~~---------~~~~~~-~l~~~~i~~~~~s~G~~~sl~~~~~~~~ 347 (389)
T 3acz_A 279 IVKVNHPGLESFPGHDIAKKQMTGYGS-TFLFEMKS---------FEAAKK-LMEHLKVCTLAVSLGCVDTLIEHPASMT 347 (389)
T ss_dssp EEEEECTTSTTSTTHHHHHHHCSSCCS-EEEEEESS---------HHHHHH-HHTTCSSSEEBSCCCCSSCEEECTTTTT
T ss_pred eeEEECCCCCCCccHHHHHhhCCCCCe-EEEEEECC---------HHHHHH-HHHhCCCcEECcCCCCcccEeeCCcccc
Confidence 122211 1244 44456652 233444 44558888776 3 22210
Q ss_pred -------------CCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 128 -------------IEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 128 -------------~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
..++.+|+|++. ++.++.++.|.+++++
T Consensus 348 ~~~~~~~~~~~~g~~~~~iRlsvg~---~~~~~li~~l~~al~~ 388 (389)
T 3acz_A 348 HAAVPENIMRKQGITPELVRISVGI---ENVDDIIADLKQALEL 388 (389)
T ss_dssp TSSSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHTC
T ss_pred cccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 125899999986 4777888888877653
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=4.9e-06 Score=64.56 Aligned_cols=140 Identities=11% Similarity=0.125 Sum_probs=85.9
Q ss_pred CCCCc-eeEEEEEecCHHHHHHHHHhhcccC--CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 2 LSLPG-FRISVIYSYNNSVLAAAKKLARFSS--VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 2 ~~~~G-~RiG~~i~~~~~~~~~~~~~~~~~~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
+|..| +++||+++ ++++++.+.......+ .+++...++...++. +....+.+.++.+.+.+.|+++ ++
T Consensus 263 ~gg~gd~~~G~l~~-~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~r~~~~~~~a~~l~~~L~~~p~v 334 (445)
T 1qgn_A 263 LGGHNDVLAGCISG-PLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT-------LHLRVQQQNSTALRMAEILEAHPKV 334 (445)
T ss_dssp TTCSSSCCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred ccccccceEEEEEE-CHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34444 57999999 8999888876655332 344444444444433 2233344556678888888887 54
Q ss_pred -ccccC----------------CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-------------
Q 042816 78 -ECAKS----------------NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC------------- 127 (163)
Q Consensus 78 -~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~------------- 127 (163)
.+..| ..|..+++.++... .+...+.+.|. ..++.+..|..+..
T Consensus 335 ~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~-----~~~~~~l~~l~-~~~i~~s~G~~~sl~~~p~~~~h~~~~ 408 (445)
T 1qgn_A 335 RHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL-----LTTAKFVDALK-IPYIAPSFGGCESIVDQPAIMSYWDLS 408 (445)
T ss_dssp EEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH-----HHHHHHHHHCS-SSEECSCCCSSSCEEECHHHHHSTTSC
T ss_pred eEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH-----HHHHHHHHhCC-CceEeccCCCCceeeecccccccccCC
Confidence 33333 13456777876421 13455555442 24777777765421
Q ss_pred --------CCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 128 --------IEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 128 --------~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
..++.+|+|++. |+++..++.|.+++++
T Consensus 409 ~~~~~~~g~~~~~iRlSvG~---Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 409 QSDRAKYGIMDNLVRFSFGV---EDFDDLKADILQALDS 444 (445)
T ss_dssp HHHHHTTTCCSSEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 125899999995 5788888888888764
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-05 Score=61.08 Aligned_cols=141 Identities=11% Similarity=0.031 Sum_probs=79.1
Q ss_pred CCCCceeE-EEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--
Q 042816 2 LSLPGFRI-SVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG-- 76 (163)
Q Consensus 2 ~~~~G~Ri-G~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-- 76 (163)
||.+|+|+ ||+++.++++++.+...... .++++..+.++...++.- . ...+...++...+.+.|.++.
T Consensus 205 ~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~---~----~~~~~~~~~~~~l~~~L~~~~~~ 277 (393)
T 1n8p_A 205 INGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTL---H----LRVRQAALSANKIAEFLAADKEN 277 (393)
T ss_dssp TTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH---H----HHHHHHHHHHHHHHHHHTSCTTT
T ss_pred ccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchH---H----HHHHHHHHHHHHHHHHHHhCCCC
Confidence 78899999 99998448898888776553 345556665555555542 2 233334455666666666552
Q ss_pred Cc-cccC---------------Cc---eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCC----------CCCC-
Q 042816 77 IE-CAKS---------------NG---GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPG----------SSCH- 126 (163)
Q Consensus 77 ~~-~~~~---------------~~---g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg----------~~f~- 126 (163)
+. +..| .+ |..+++.++.. ..+...+...| +..++.+..| ..+.
T Consensus 278 l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-----~~~~~~~l~~l-~~~~~~~s~G~~~s~~~~p~~~~h~ 351 (393)
T 1n8p_A 278 VVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG-----AEAASKFASST-RLFTLAESLGGIESLLEVPAVMTHG 351 (393)
T ss_dssp EEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC-----HHHHHHHHHHC-SSSEECSCCCCSSCEEECTTTTTSC
T ss_pred ceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCc-----HHHHHHHHhhC-CcceECCCCCCCcceeecccccccc
Confidence 21 1111 12 55688888742 02445555544 2245554333 2221
Q ss_pred ----------CCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 127 ----------CIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 127 ----------~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
...++.+|+|++. ++.++.++.+.+++++
T Consensus 352 ~~~~~~~~~~g~~~~~iRlS~g~---~~~~~~i~~l~~al~~ 390 (393)
T 1n8p_A 352 GIPKEAREASGVFDDLVRISVGI---EDTDDLLEDIKQALKQ 390 (393)
T ss_dssp SSCTTTTTTTSCCTTEEEEECCS---SCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHhcCCCCCeEEEEEcc---CCHHHHHHHHHHHHHH
Confidence 0125899999997 3344445555555544
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-06 Score=68.62 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=74.9
Q ss_pred cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--C----CccccCCceeEEEeecCCcccCCChhh
Q 042816 30 SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL--G----IECAKSNGGFYCWADMSGLISSYSEKG 103 (163)
Q Consensus 30 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--g----~~~~~~~~g~~~~~~~~~~~~~~~~~~ 103 (163)
++.++++|.++...|+.- .+ +...+.++++.+++.+.|+++ + +...++.|. +++++++.. .+
T Consensus 354 ~~~~~~~~aaa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~-~~~~~~~~~------~~ 421 (472)
T 1ohv_A 354 WLGDPSKNLLLAEVINII---KR--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGT-FCSFDTPDE------SI 421 (472)
T ss_dssp SSSCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETT-EEEEECSSH------HH
T ss_pred cCccHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCce-EEEEEeCCh------hH
Confidence 356888888777776531 11 234455556666666666553 1 333455544 556677642 25
Q ss_pred HHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 104 ELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 104 ~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
...+++.|++ +||.+.|+ +.+++|++++. ++++++++++++|.+++.++
T Consensus 422 ~~~~~~~l~~-~Gv~~~~~------g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 422 RNKLISIARN-KGVMLGGC------GDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp HHHHHHHHHH-TTEECEEE------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH-CCeEEecC------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 6789998887 89999984 15799997763 48899999999999998765
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.5e-06 Score=68.10 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-CCccc-cCCceeEEEeecCCcccCCCh-hhHHHHHHHHHHhcCeEEcCCCCCCCC
Q 042816 52 KFININRERLRRLYVKFVAGLRQL-GIECA-KSNGGFYCWADMSGLISSYSE-KGELELWDKLLNVAKVNVTPGSSCHCI 128 (163)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~pg~~f~~~ 128 (163)
+.+++..+...++.+++.+.|+++ ++++. +|.++++ ++++...- ... .-..++.+.|.+ .|+.+.++..+.
T Consensus 390 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v-~f~~~~~~--~~~~~l~~~l~~~l~~-~G~~~~~~~~~~-- 463 (497)
T 2qma_A 390 KALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTV-LFRATHET--ADLDELNKALRLEALT-RGIAVLGETIVD-- 463 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEE-EEEECCSS--SCHHHHHHHHHHHHHH-HTSCBCEEEEET--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEE-EEEEcCCc--cCHHHHHHHHHHHHHh-CCCEEEEeeEEC--
Confidence 345667777888999999999987 88774 5666644 44554310 000 013456677766 798887655443
Q ss_pred CCceEEEEEe--cCChhHHHHHHHHHHHHHHHh
Q 042816 129 EPGWFSFSFT--LLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 129 ~~~~iRi~~~--~~~~~~l~~~~~~l~~~~~~~ 159 (163)
+.+++|+++. ..++++++.+++.|.++++++
T Consensus 464 g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 464 GKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 2579999984 248899999999999988764
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=5.4e-06 Score=65.02 Aligned_cols=149 Identities=13% Similarity=0.133 Sum_probs=92.2
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhc-cc-C---------------------CChHHHHHHHHhcCChHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLAR-FS-S---------------------VSAPSQNLLVSMLSDTKFVQKFININR 58 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~-~~-~---------------------~s~~~q~~~~~~l~~~~~~~~~~~~~~ 58 (163)
++.| .++|++++.++++.+....... +. + ...+.+.++..++. .+.+++..
T Consensus 315 ~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg-----~~g~~~~~ 388 (504)
T 2okj_A 315 MGVL-LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG-----TVGFENQI 388 (504)
T ss_dssp TCCC-SCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH-----HHHHHHHH
T ss_pred cCCC-cceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh-----HHHHHHHH
Confidence 3445 7899999955456554322211 11 0 12444545544443 23356777
Q ss_pred HHHHHHHHHHHHHhhhc-CCcccc---CCceeEEEeecCCcccC--CCh-------hhHHHHHHHHHHhcCe-EEcCCCC
Q 042816 59 ERLRRLYVKFVAGLRQL-GIECAK---SNGGFYCWADMSGLISS--YSE-------KGELELWDKLLNVAKV-NVTPGSS 124 (163)
Q Consensus 59 ~~~~~~~~~l~~~l~~~-g~~~~~---~~~g~~~~~~~~~~~~~--~~~-------~~~~~~~~~l~~~~gi-~v~pg~~ 124 (163)
+...++.+++.+.|+++ |+++.. |..++++|...|..... .+. ....++.+.|.+ .|+ .+.++ .
T Consensus 389 ~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~G~~~~~~~-~ 466 (504)
T 2okj_A 389 NKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMME-SGTTMVGYQ-P 466 (504)
T ss_dssp HHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHH-HTSCEEEEE-E
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHh-CCcEEEEee-E
Confidence 78888999999999988 887764 78888777555532100 000 014578888877 675 44433 2
Q ss_pred CCCCCCceEEEEEec--CChhHHHHHHHHHHHHHHHh
Q 042816 125 CHCIEPGWFSFSFTL--LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 125 f~~~~~~~iRi~~~~--~~~~~l~~~~~~l~~~~~~~ 159 (163)
+. ..++++|++++. .+.++++.+++.|.++.+++
T Consensus 467 ~~-~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 467 QG-DKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp ET-TEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred EC-CceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 32 114699999972 37889999999999887765
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-05 Score=59.94 Aligned_cols=144 Identities=11% Similarity=0.118 Sum_probs=86.8
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc--------------cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF--------------SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKF 68 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~--------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 68 (163)
+.+|. .||++++++++.+.+...... +..+.+.+.+....+. .+++..+..+++.+.+
T Consensus 190 ~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~-------~~~~~~~~~~~~~~~l 261 (374)
T 3uwc_A 190 NVWSD-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMN-------QLETITEKRRGIAHLY 261 (374)
T ss_dssp CCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGG-------GHHHHHHHHHHHHHHH
T ss_pred Cccce-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 33354 999998667888887766531 1123333332222221 1244555666777888
Q ss_pred HHHhhhc-C-Cccc-cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-------------C----
Q 042816 69 VAGLRQL-G-IECA-KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-------------I---- 128 (163)
Q Consensus 69 ~~~l~~~-g-~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-------------~---- 128 (163)
.+.|++. + +++. .+.++...|..++... .+..++.+.|.+ +||.+.++..... .
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~-~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (374)
T 3uwc_A 262 DQSFVDLSEFIDVPVRREGVYHVFHIYVLRV-----KYRDQLFQYLKD-NGIEVKIHYPIAMHLQPAAKSLGYQQGDFPM 335 (374)
T ss_dssp HHHTGGGTTTEECCCCCTTEECCCSSEEEEE-----TTHHHHHHHHHH-TTBCCBCSCSSCGGGSGGGGGGCCCTTSCHH
T ss_pred HHHhccCCCeEEeccCCCCCceeeEEEEEEc-----CCHHHHHHHHHH-CCCccccCCCCccccChhhhhcCCccCCCcc
Confidence 8888877 4 5543 2333333332222111 156788888876 8999998852110 0
Q ss_pred ----CCceEEEEEec-CChhHHHHHHHHHHHHHHHhh
Q 042816 129 ----EPGWFSFSFTL-LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 129 ----~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~ 160 (163)
..+.+|+++.. .++++++..++.|.+++++.+
T Consensus 336 ~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~~ 372 (374)
T 3uwc_A 336 AEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEKH 372 (374)
T ss_dssp HHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 02789998864 488999999999999987653
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.26 E-value=6.4e-07 Score=69.41 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=51.9
Q ss_pred CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc-CCCCCCCCCCceEEEEEec-CChhHHHHHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT-PGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIR 153 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~-pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~ 153 (163)
|+++..+..+.++|++++. . +..++.+.|.+ +||.+. +| .+++|++++. .+++++ .+++.|.
T Consensus 284 g~~~~~~~~~~~l~i~~~~-~------~~~~l~~~L~~-~GI~v~~~g-------~~~iRi~~~~~~t~e~i-~l~~aL~ 347 (446)
T 2x3l_A 284 GFEMLQVDDPLKLLIKYEG-F------TGHDIQNWFMN-AHIYLELAD-------DYQALAILPLWHHDDTY-LFDSLLR 347 (446)
T ss_dssp TCEEEECSSTTEEEEECTT-S------CHHHHHHHHHH-TTEEESEEC-------SSCEEEECCCCCTTCCC-CHHHHHH
T ss_pred CCEECcCCCCeEEEEEeCC-c------CHHHHHHHHHH-CCCEEEecC-------CCEEEEEeecCCCHHHH-HHHHHHH
Confidence 7777766656679999873 2 67889988877 699997 43 3689999974 366788 9999998
Q ss_pred HHHHHh
Q 042816 154 RISQTC 159 (163)
Q Consensus 154 ~~~~~~ 159 (163)
++++++
T Consensus 348 ~~~~~~ 353 (446)
T 2x3l_A 348 KIEDMI 353 (446)
T ss_dssp HHHTCC
T ss_pred HHHHhh
Confidence 887654
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=98.20 E-value=9.3e-06 Score=60.96 Aligned_cols=146 Identities=14% Similarity=0.177 Sum_probs=82.2
Q ss_pred CCc-eeEEEEEecCHHHHHHHHHhhcc--------------cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Q 042816 4 LPG-FRISVIYSYNNSVLAAAKKLARF--------------SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKF 68 (163)
Q Consensus 4 ~~G-~RiG~~i~~~~~~~~~~~~~~~~--------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 68 (163)
+++ -+.|+++++++++.+.+...... +..+.+...+....+. .+++..+..++..+++
T Consensus 188 l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~-------~~~~~~~~~~~~~~~~ 260 (373)
T 3frk_A 188 LGSLGDGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLK-------YLDKWNEERRKIAQKY 260 (373)
T ss_dssp SCCSSSCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHH-------THHHHHHHHHHHHHHH
T ss_pred cCccceeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 444 45899999567788877765542 1123333333222222 2344555566677777
Q ss_pred HHHhhhcCCccc-cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-------------C-----
Q 042816 69 VAGLRQLGIECA-KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-------------E----- 129 (163)
Q Consensus 69 ~~~l~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-------------~----- 129 (163)
.+.|++.++.+. .+.++...|..++... .+..++.+.|.+ +||.+.++...... .
T Consensus 261 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (373)
T 3frk_A 261 IAGINNPNVIIPVEADYAKHVWYTFVIRS-----EKRDELQKYLNN-NGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAE 334 (373)
T ss_dssp HHHCCCTTEECCCCCTTEECCCSSEEEEE-----SSHHHHHHHHHH-TTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHH
T ss_pred HHHhccCceEeccCCCCCceeeEEEEEEe-----CCHHHHHHHHHH-CCCCcccCcCCccccChHHHhcCCCCCCCHHHH
Confidence 788877653332 1222322332222111 156788888876 79999976521100 0
Q ss_pred ---CceEEEEEec-CChhHHHHHHHHHHHHHHHhhhc
Q 042816 130 ---PGWFSFSFTL-LTEKDIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 130 ---~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~~ 162 (163)
.+.+|+++.. .++++++..++.|+++..++.|+
T Consensus 335 ~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~~~~~ 371 (373)
T 3frk_A 335 KIANEILSIPIWYGMKNEEIEYVIDKINAWKLEHHHH 371 (373)
T ss_dssp HHHHHEEEECCCTTCCHHHHHHHHHHHHTCC------
T ss_pred HHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhhhccc
Confidence 2689999864 58899999999999988776654
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=6e-05 Score=56.45 Aligned_cols=142 Identities=14% Similarity=0.170 Sum_probs=81.5
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--------------cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--------------SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVK 67 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (163)
+|.+|. .|+++++++++.+.+...... +..+.+.+.++...++. ++...+..++..++
T Consensus 187 l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~-------~~~~~~~~~~~~~~ 258 (367)
T 3nyt_A 187 LGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEI-------FEEEIALRQKVAAE 258 (367)
T ss_dssp SCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHH
T ss_pred CCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 455576 999999668898888775542 23455555544444432 23334445556677
Q ss_pred HHHHhhhcCCcccc-CCce---eE-EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCC--------CC-CC-----
Q 042816 68 FVAGLRQLGIECAK-SNGG---FY-CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSS--------CH-CI----- 128 (163)
Q Consensus 68 l~~~l~~~g~~~~~-~~~g---~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~--------f~-~~----- 128 (163)
+.+.|++.++.+.. +.++ ++ +++.++ +...+.+.|.+ +||.+.++.. |. ..
T Consensus 259 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~L~~-~GI~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (367)
T 3nyt_A 259 YDLSLKQVGIGTPFIEVNNISVYAQYTVRMD---------NRESVQASLKA-AGVPTAVHYPIPLNKQPAVADEKAKLPV 328 (367)
T ss_dssp HHHHHHHTTCCCCCCCTTEECCCSSEEEECS---------SHHHHHHHHHH-HTCCCBCSCSSCGGGSGGGCCTTCCCHH
T ss_pred HHHHhccCCeeccCCCCCCceeeEEEEEEeC---------CHHHHHHHHHH-CCCceeccCCCccccChhhhccCCCChH
Confidence 77778777654432 2222 22 233333 45778887766 8999987643 10 00
Q ss_pred ----CCceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 129 ----EPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 129 ----~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
..+.+|+++.. .++++++..++.|.++-..+.|
T Consensus 329 ~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~~~~~~~ 366 (367)
T 3nyt_A 329 GDKAATQVMSLPMHPYLDTASIKIICAALTNLEHHHHH 366 (367)
T ss_dssp HHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-------
T ss_pred HHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHhhcccC
Confidence 04578888864 4778888888877765544433
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=98.11 E-value=3.3e-05 Score=60.28 Aligned_cols=102 Identities=8% Similarity=0.050 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCC
Q 042816 52 KFININRERLRRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEP 130 (163)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~ 130 (163)
+-+++..+.+.++.+++.+.|+++ |+++..+.....+++.++.. .....++.+.|.++.++.+.|+..++ .
T Consensus 369 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~-----~~~~~~l~~~L~~~g~~~~~~~~~~g---~ 440 (475)
T 3k40_A 369 ENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGS-----NERNEALLKRINGRGHIHLVPAKIKD---V 440 (475)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSC-----HHHHHHHHHHHHHHTSCBCEEEEETT---E
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCc-----hHHHHHHHHHHHhCCcEEEEeeEECC---E
Confidence 445777888899999999999998 88887655555566666531 02567899998885555666654443 6
Q ss_pred ceEEEEEec--CChhHHHHHHHHHHHHHHHhhh
Q 042816 131 GWFSFSFTL--LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 131 ~~iRi~~~~--~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
.++|++++. .+.++++.+++.|.++.+++..
T Consensus 441 ~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 441 YFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQ 473 (475)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 799999874 2678999999999999887654
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=3.9e-05 Score=60.43 Aligned_cols=110 Identities=14% Similarity=0.146 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc-CCcccc---CCceeEEEeecCCcccCC--Ch-------hhHHHHHHHHHHhcCe
Q 042816 51 QKFININRERLRRLYVKFVAGLRQL-GIECAK---SNGGFYCWADMSGLISSY--SE-------KGELELWDKLLNVAKV 117 (163)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~---~~~g~~~~~~~~~~~~~~--~~-------~~~~~~~~~l~~~~gi 117 (163)
.+.+++..+...++.+++.+.|++. |+++.. |..++..|.-.|...... +. ....++.+.|.+ .|+
T Consensus 384 ~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~G~ 462 (511)
T 3vp6_A 384 TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMME-SGT 462 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHH-HTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHh-cCC
Confidence 4557788888899999999999988 887765 677776654445433110 10 013468888887 565
Q ss_pred EEcCCCCCCCCCCceEEEEEec--CChhHHHHHHHHHHHHHHHhhhc
Q 042816 118 NVTPGSSCHCIEPGWFSFSFTL--LTEKDIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 118 ~v~pg~~f~~~~~~~iRi~~~~--~~~~~l~~~~~~l~~~~~~~~~~ 162 (163)
.+.. ..+...+.+++|++++. .+.++++.+++.|.+.-+.+.||
T Consensus 463 ~~~~-~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~~~~ 508 (511)
T 3vp6_A 463 TMVG-YQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDLHHH 508 (511)
T ss_dssp CEEE-EEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC-----
T ss_pred EEEE-EEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 4443 22222224689999943 37788999999999888776654
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=6.7e-05 Score=56.98 Aligned_cols=119 Identities=10% Similarity=-0.007 Sum_probs=77.7
Q ss_pred CCChHHHHHHHHhcCChHHHHHH--HHHHHHHHHHHHHHHHHHhhhc-CCcccc----CCceeEEEeecCCcccCCChhh
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKF--ININRERLRRLYVKFVAGLRQL-GIECAK----SNGGFYCWADMSGLISSYSEKG 103 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~-g~~~~~----~~~g~~~~~~~~~~~~~~~~~~ 103 (163)
+++...-.++..+++.- .+. ++...++.++..+++++.|+++ |+...+ ..++..+-+.++..- .+..-
T Consensus 249 Tp~v~~i~~l~~al~~l---~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~--~~~~~ 323 (377)
T 3e77_A 249 TPPCFSIYVMGLVLEWI---KNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAK--GDDAL 323 (377)
T ss_dssp CCCHHHHHHHHHHHHHH---HHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTT--CCHHH
T ss_pred CchHHHHHHHHHHHHHH---HHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCC--CchhH
Confidence 45555555555555421 232 6778888889999999999998 776432 123444555565410 00001
Q ss_pred HHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 104 ELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 104 ~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
+..+...+.+ +||.+.+|... .+.+|+|+.. .+.++++..++.|+++.++.
T Consensus 324 ~~~~l~~l~~-~Gi~~~~g~~~----~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 375 (377)
T 3e77_A 324 EKRFLDKALE-LNMLSLKGHRS----VGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375 (377)
T ss_dssp HHHHHHHHHH-TTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCcEEeCCCCc----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 2456676665 89999988632 4569999975 37899999999999988764
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=5.7e-05 Score=58.98 Aligned_cols=101 Identities=13% Similarity=0.042 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCC
Q 042816 52 KFININRERLRRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEP 130 (163)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~ 130 (163)
+.+++..+...++.+++.+.|+++ |+++..+.....++++++..- ....++.+.|.++..+.+.|+... +.
T Consensus 376 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~-----~~~~~l~~~L~~~g~~~~~~~~~~---g~ 447 (481)
T 4e1o_A 376 KNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPN-----SLTENVLKEIAKAGRLFLIPATIQ---DK 447 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCH-----HHHHHHHHHHHHHCSSBCEEEEET---TE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCch-----HHHHHHHHHHHhCCeEEEEeeEEC---CE
Confidence 445777888889999999999998 888876555556677775310 256788998887444565654432 25
Q ss_pred ceEEEEEec--CChhHHHHHHHHHHHHHHHhh
Q 042816 131 GWFSFSFTL--LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 131 ~~iRi~~~~--~~~~~l~~~~~~l~~~~~~~~ 160 (163)
.++|+++.. .++++++.+++.|.++.+++-
T Consensus 448 ~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 448 LIIRFTVTSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 799999864 257899999999999887754
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00043 Score=52.79 Aligned_cols=135 Identities=14% Similarity=0.106 Sum_probs=73.8
Q ss_pred CCCCceeEEEEEecC-H--------------------------HHHHHHHHhh-ccc--CCChHHHHHHHHhcCChHHHH
Q 042816 2 LSLPGFRISVIYSYN-N--------------------------SVLAAAKKLA-RFS--SVSAPSQNLLVSMLSDTKFVQ 51 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~-~--------------------------~~~~~~~~~~-~~~--~~s~~~q~~~~~~l~~~~~~~ 51 (163)
++.||.|+|++++.+ . ++.+.++... ... ..++....++...++.
T Consensus 204 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~----- 278 (412)
T 2cb1_A 204 ASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLET----- 278 (412)
T ss_dssp TTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGG-----
T ss_pred ccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCch-----
Confidence 678999999998744 2 4555555443 212 2233333333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-CCccc-cC----------------CceeEEEeecCCcccCCChhhHHHHHHHHHH
Q 042816 52 KFININRERLRRLYVKFVAGLRQL-GIECA-KS----------------NGGFYCWADMSGLISSYSEKGELELWDKLLN 113 (163)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 113 (163)
+....+...++.+.+.+.|.++ ++... .| ..+-.+.+.+ . +..++.+.| +
T Consensus 279 --l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~--------~~~~~~~~l-~ 346 (412)
T 2cb1_A 279 --VALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G--------DLERASRFL-G 346 (412)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S--------SHHHHHHHH-H
T ss_pred --HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C--------CHHHHHHHH-H
Confidence 1223333456778888888887 77633 22 1233455566 3 335555544 4
Q ss_pred hcCeEEcCCCC---------CCC---------------CCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 114 VAKVNVTPGSS---------CHC---------------IEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 114 ~~gi~v~pg~~---------f~~---------------~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
+.||.+ .++. ... ..++.+|+|++. ++.++-++.+.++++
T Consensus 347 ~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~---~~~~~~i~~l~~al~ 410 (412)
T 2cb1_A 347 AIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGL---EDPLDLLALFEEALE 410 (412)
T ss_dssp HCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHH
T ss_pred hCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 589998 7641 100 015899999986 333445555555543
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00042 Score=52.24 Aligned_cols=138 Identities=9% Similarity=0.015 Sum_probs=86.1
Q ss_pred eEEEEEecCHHHHHHHHH-----------h-hc---ccCCChHHHHHHHHhcCChHHHHHH--HHHHHHHHHHHHHHHHH
Q 042816 8 RISVIYSYNNSVLAAAKK-----------L-AR---FSSVSAPSQNLLVSMLSDTKFVQKF--ININRERLRRLYVKFVA 70 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~-----------~-~~---~~~~s~~~q~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~ 70 (163)
.+|++++ .+++.+.+.. . .. +.+++...-.++..+++- +.+. ++...++.++..+++++
T Consensus 200 G~g~l~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~---l~~~gG~~~i~~~~~~l~~~l~~ 275 (361)
T 3m5u_A 200 GLSCIFI-RKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDW---LLNQGGLDKVHEKNSQKATMLYE 275 (361)
T ss_dssp TCEEEEE-EHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH---HHTTTCHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEE-cHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHHHHH
Confidence 3677888 7777766543 0 01 123455554444444432 1222 56778888889999999
Q ss_pred HhhhcC-C-cccc-C--CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhH
Q 042816 71 GLRQLG-I-ECAK-S--NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKD 144 (163)
Q Consensus 71 ~l~~~g-~-~~~~-~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~ 144 (163)
.|++++ + .... + .....+-+.+|.. .+ .+ .++...|. ++||.+.+|..- .+.+|+|+.. .+.++
T Consensus 276 ~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~---~~-~~-~~~~~~L~-~~gI~~~~g~~~----~g~iRiS~~~~~t~ed 345 (361)
T 3m5u_A 276 CIDLSNGFYKGHADKKDRSLMNVSFNIAKN---KD-LE-PLFVKEAE-EAGMIGLKGHRI----LGGIRASIYNALNLDQ 345 (361)
T ss_dssp HHHTSTTSEEESSCGGGBCSSEEEEEESSC---TT-HH-HHHHHHHH-HTTEECCBCCTT----TCSEEEECCTTSCHHH
T ss_pred HHHHCCCeeeccCCHHHcCCeEEEEECCCc---hh-hh-HHHHHHHH-HCCCEEecCCCc----cCeEEEEccCCCCHHH
Confidence 999884 5 3321 1 2233444555531 00 13 46777665 589999887542 2459999975 37899
Q ss_pred HHHHHHHHHHHHHHh
Q 042816 145 IHVVMERIRRISQTC 159 (163)
Q Consensus 145 l~~~~~~l~~~~~~~ 159 (163)
++..++.|+++.+++
T Consensus 346 Id~l~~al~~~~~~~ 360 (361)
T 3m5u_A 346 VKTLCEFMKEFQGKY 360 (361)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988764
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.87 E-value=5.2e-05 Score=58.52 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-CCc-cccCC----------------ceeEEEeecCCcccCCChhhHHHHHHHHHHhc
Q 042816 54 ININRERLRRLYVKFVAGLRQL-GIE-CAKSN----------------GGFYCWADMSGLISSYSEKGELELWDKLLNVA 115 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~-g~~-~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 115 (163)
+....+...++...+.+.|+++ +++ +..|. ||+.+|++++.. .+...|.+.|.. .
T Consensus 298 l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~------~~~~~~~~~l~~-~ 370 (430)
T 3ri6_A 298 MALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESK------EASYRFMDALKL-I 370 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSH------HHHHHHHHHCSS-S
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCH------HHHHHHHHhCCc-c
Confidence 3444455677888899999887 554 44444 776899999742 356677776643 6
Q ss_pred CeEEcCCCCCCC---------------------CCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 116 KVNVTPGSSCHC---------------------IEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 116 gi~v~pg~~f~~---------------------~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
++.+.+|..+.. ..++.+|+|++. |+.+..++.|.+++
T Consensus 371 ~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~---E~~~dl~~dl~~al 429 (430)
T 3ri6_A 371 RRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI---EEIEDLKEDILQAL 429 (430)
T ss_dssp EECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred eecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHhh
Confidence 777777876651 237899999997 45555555555544
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00024 Score=54.25 Aligned_cols=140 Identities=11% Similarity=0.007 Sum_probs=82.8
Q ss_pred CCCCceeEEE--EEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 042816 2 LSLPGFRISV--IYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-G 76 (163)
Q Consensus 2 ~~~~G~RiG~--~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g 76 (163)
++.+|.++|. +++.++++.+.+...... .+.+++...++...++.- ....+...++...+.+.|+++ .
T Consensus 215 l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~l-------~~r~~~~~~~a~~l~~~L~~~p~ 287 (400)
T 3nmy_A 215 LNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTL-------PLRMRAHCENALALAQWLETHPA 287 (400)
T ss_dssp TTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhHH-------HHHHHHHHHHHHHHHHHHHcCCC
Confidence 5667778755 454478888888776653 345666666665655542 233444566777888888776 3
Q ss_pred Cc-cccC----------------CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-------------
Q 042816 77 IE-CAKS----------------NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH------------- 126 (163)
Q Consensus 77 ~~-~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~------------- 126 (163)
+. +..| ..|..++++++... .....|.+.|. -.++.+..|..+.
T Consensus 288 v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~-----~~~~~~~~~l~-~~~~~~s~G~~~sl~~~p~~~~~~~~ 361 (400)
T 3nmy_A 288 IEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF-----DAAKRFCEKTE-LFTLAESLGGVESLVNHPAVMTHASI 361 (400)
T ss_dssp EEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH-----HHHHHHHHHCS-SSEECSCCCSSSCEEECTTTTTTTTS
T ss_pred EeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH-----HHHHHHHHcCC-cceEecCCCCCcceeeCccccccccC
Confidence 32 2222 24667888886421 13445555442 2344444444321
Q ss_pred --------CCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 127 --------CIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 127 --------~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
...++.+|+|++. |+.+..++.|.++++
T Consensus 362 ~~~~~~~~gi~~~liRlsvGl---e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 362 PVARREQLGISDALVRLSVGI---EDLGDLRGDLERALV 397 (400)
T ss_dssp CHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHC
T ss_pred CHHHHHhcCCCcCeEEEEeCc---CCHHHHHHHHHHHHh
Confidence 0136799999997 455556666666654
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0004 Score=53.99 Aligned_cols=140 Identities=16% Similarity=0.103 Sum_probs=77.6
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc------ccCCChHHHHHHHH---hcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR------FSSVSAPSQNLLVS---MLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~------~~~~s~~~q~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
.|+-+|.+.+ .+++.+.+..... .++.|+++..++.+ .+++++. .+.+++.-+.++++. .+.++++
T Consensus 291 gG~Piga~~~-~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~-~~~~~~~g~~l~~~L---~~l~~~~ 365 (454)
T 4ao9_A 291 GGMSFGAFGG-RADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEA-AGALAERGEALRARL---NALCANE 365 (454)
T ss_dssp TTSSCEEEEE-CHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHH-HHHHHHHHHHHHHHH---HHHHHHH
T ss_pred CCCcceeeee-HHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccCh-hHHHHHHHHHHHHHH---HHHHhhC
Confidence 3677999999 8999887754221 13456666654444 4455433 233333333333333 3333334
Q ss_pred CCcc-ccCCceeEEEeecCC-ccc------CCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHH
Q 042816 76 GIEC-AKSNGGFYCWADMSG-LIS------SYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHV 147 (163)
Q Consensus 76 g~~~-~~~~~g~~~~~~~~~-~~~------~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~ 147 (163)
++.. ....| ..+-+.+.. ... ..+..-...++..+++ +||++.|. +++.++.. ++++++++
T Consensus 366 ~~~~~vrg~G-~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~Gv~~~p~--------~~~~~s~~-~T~~dId~ 434 (454)
T 4ao9_A 366 GVAMQFTGIG-SLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLN-EDIYSSPR--------GFVVLSLP-LTDADIDR 434 (454)
T ss_dssp TBSCEEEEET-TEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHH-TTEECCTT--------CEEECCTT-CCHHHHHH
T ss_pred CCCEEEeeec-eEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHH-CCEEEcCC--------CCEEEeCC-CCHHHHHH
Confidence 3222 22233 333344421 110 0111123456777877 89999873 23445544 48999999
Q ss_pred HHHHHHHHHHHhh
Q 042816 148 VMERIRRISQTCK 160 (163)
Q Consensus 148 ~~~~l~~~~~~~~ 160 (163)
+++.|.+++.++.
T Consensus 435 ~l~al~~~l~~~~ 447 (454)
T 4ao9_A 435 YVAAIGSFIGGHG 447 (454)
T ss_dssp HHHHHHHHHHHSG
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998764
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.002 Score=48.63 Aligned_cols=138 Identities=12% Similarity=0.101 Sum_probs=79.2
Q ss_pred eEEEEEecCHHHHHHHHHhhcc--------------cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042816 8 RISVIYSYNNSVLAAAKKLARF--------------SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLR 73 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~~~--------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 73 (163)
+.|++++.++++++.+...... ..++.+.+.++...++. ++...+..+++.+.+.+.|+
T Consensus 197 ~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~-------l~~~~~~~~~~~~~~~~~L~ 269 (377)
T 3ju7_A 197 EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKK-------WDDKLKERTRISEWYKQLLQ 269 (377)
T ss_dssp SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhc
Confidence 6889888778888888776541 23455555444444433 23334444555666667777
Q ss_pred hc-CC--ccccCCc--ee--EEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCC--CCC---------C-------
Q 042816 74 QL-GI--ECAKSNG--GF--YCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSS--CHC---------I------- 128 (163)
Q Consensus 74 ~~-g~--~~~~~~~--g~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~--f~~---------~------- 128 (163)
++ ++ .+.++.+ .+ |+.+.++... +..++.+.|.+ +||.+.++.. ... .
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~-~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 342 (377)
T 3ju7_A 270 SNGLMKKGWQLQKTEAVIQQFMPILCPEEV------RNKQVIEDLKK-QKIEARLYFSPSCHQQVLFRNYKSTDLTRTNK 342 (377)
T ss_dssp HTTTTTTTCBCCCCSCBCCSSEEEECCTTS------CHHHHHHHHHT-TTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHH
T ss_pred CCCCccccccCCCCCcceEEEEEEEeCChh------hHHHHHHHHHH-CCCceecccCCccccchhhhcCCCCCCHHHHH
Confidence 66 32 2322221 22 2234444321 36788888865 8999887651 110 0
Q ss_pred -CCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 129 -EPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 129 -~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
..+.+|+.+.. .++++++..++.|.+++.+.
T Consensus 343 ~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~~ 375 (377)
T 3ju7_A 343 IAKRIVSLPLWEGMTKEIVEQIVICLGQKVVSA 375 (377)
T ss_dssp HHHHEEEECCCTTCCHHHHHHHHHHHTC-----
T ss_pred HHhCEEECCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 04578888864 47789999999888877653
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0024 Score=48.04 Aligned_cols=95 Identities=9% Similarity=0.007 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc-CCccccC--CceeE-EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcC---CCCC
Q 042816 53 FININRERLRRLYVKFVAGLRQL-GIECAKS--NGGFY-CWADMSGLISSYSEKGELELWDKLLNVAKVNVTP---GSSC 125 (163)
Q Consensus 53 ~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~--~~g~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~p---g~~f 125 (163)
++++..+..+++++++.+.|+++ |+++..+ .++++ +++.++... + .+..++.+.|.+ +||.+.+ |+..
T Consensus 267 ~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~-~~~~~l~~~L~~-~gI~v~~~~~~~~~ 341 (390)
T 3b8x_A 267 KLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDS---G-VIRKQLVENLNS-AGIECRPIVTGNFL 341 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTS---C-CCHHHHHHHHHH-TTBCCBCSTTSSGG
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcC---c-ccHHHHHHHHHH-CCCCeeeecCCchh
Confidence 34567777788889999999887 7766543 34443 566665210 0 156788888865 8999987 3211
Q ss_pred CC-C-----------C--------CceEEEEEec-CChhHHHHHHHHH
Q 042816 126 HC-I-----------E--------PGWFSFSFTL-LTEKDIHVVMERI 152 (163)
Q Consensus 126 ~~-~-----------~--------~~~iRi~~~~-~~~~~l~~~~~~l 152 (163)
.. + . .+.+||++.. .+.++++..++.|
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 342 KNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp GCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred hcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 11 0 0 1368999865 4778877777654
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0021 Score=48.86 Aligned_cols=114 Identities=4% Similarity=-0.026 Sum_probs=74.1
Q ss_pred CCChHHHHHHHHhcCChHHHHHH--HHHHHHHHHHHHHHHHHHhhhcCC-ccc-c--CCceeEEEeecCC-cccCCChhh
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKF--ININRERLRRLYVKFVAGLRQLGI-ECA-K--SNGGFYCWADMSG-LISSYSEKG 103 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~g~-~~~-~--~~~g~~~~~~~~~-~~~~~~~~~ 103 (163)
+++.+.-.++..+++.- .+. ++...++.++..+++++.|+++|+ ... . ..+...+-+.+|. .+ +
T Consensus 264 Tp~v~~i~~l~~Al~~~---~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~~~~~~~------~ 334 (386)
T 3qm2_A 264 TPPTFAWYLSGLVFKWL---KAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQLADNTL------D 334 (386)
T ss_dssp --CCSHHHHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEEESSGGG------H
T ss_pred CCcHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEECCCccc------c
Confidence 45555555555555422 333 677888888899999999988764 211 1 1233345556663 22 4
Q ss_pred HHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 104 ELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 104 ~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
..+...|. ++||.+.+|... .+.+|+|+.. .+.++++..++.|+++.++.
T Consensus 335 -~~~~~~L~-~~gI~~~~g~~~----~~~iRiS~~~~~t~edId~l~~~l~~~~~~~ 385 (386)
T 3qm2_A 335 -KVFLEESF-AAGLHALKGHRV----VGGMRASIYNAMPIEGVKALTDFMIDFERRH 385 (386)
T ss_dssp -HHHHHHHH-HTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHH-HCCCEEeCCCCC----cCeEEEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 56777665 589999887543 2459999975 37899999999999887663
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=1.2e-05 Score=66.85 Aligned_cols=144 Identities=12% Similarity=0.069 Sum_probs=83.9
Q ss_pred c-eeEEEEEecCHHHHHHHHHhh------c--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHH-HHHHHHHh
Q 042816 6 G-FRISVIYSYNNSVLAAAKKLA------R--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRL-YVKFVAGL 72 (163)
Q Consensus 6 G-~RiG~~i~~~~~~~~~~~~~~------~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~-~~~l~~~l 72 (163)
| +++|++++ ++++.+.+.... . .++.+++++.++.+.|+ ++.+ .+.+.+..+.+++. .+.+.+.+
T Consensus 669 G~~Plgav~~-~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l-~~~~~~~~~~l~~~l~~~l~~~l 746 (831)
T 4a0g_A 669 GMVPLAVTLA-TDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPET-NHNITSQGKTLRELWDEELVQQI 746 (831)
T ss_dssp TSSCCEEEEE-CHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTT-CTTBCTTSSBBCCCSCHHHHHHH
T ss_pred CccCcEEEEE-CHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 79999999 999999886531 1 24567777776665553 2211 11111111111110 11234445
Q ss_pred hhc-CCccccCCceeEEEeecCCcc--cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHH
Q 042816 73 RQL-GIECAKSNGGFYCWADMSGLI--SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVV 148 (163)
Q Consensus 73 ~~~-g~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~ 148 (163)
+++ .+...... |.++.+++...- ..........+++.|++ +||.+.|+ .+.+|++... +++++++++
T Consensus 747 ~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e-~Gv~v~p~-------g~~lrl~pp~~~t~e~id~~ 817 (831)
T 4a0g_A 747 SSHSAVQRVVVI-GTLFALELKADASNSGYASLYAKSLLIMLRE-DGIFTRPL-------GNVIYLMCGPCTSPEICRRL 817 (831)
T ss_dssp HHSTTEEEEEEE-TTEEEEEEC---------CHHHHHHHHHHHH-TTEECCCB-------TTEEEEECCTTCCHHHHHHH
T ss_pred hhCCCceeEeec-ccEEEEEEecCccccccchHHHHHHHHHHHH-CCcEEEec-------CCEEEEECCCCCCHHHHHHH
Confidence 555 34444444 445555654210 00011245678888876 89999874 2689998532 489999999
Q ss_pred HHHHHHHHHHhh
Q 042816 149 MERIRRISQTCK 160 (163)
Q Consensus 149 ~~~l~~~~~~~~ 160 (163)
+++|.++++++.
T Consensus 818 ~~~l~~~l~~l~ 829 (831)
T 4a0g_A 818 LTKLYKRLGEFN 829 (831)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0063 Score=50.02 Aligned_cols=51 Identities=8% Similarity=0.055 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHhh
Q 042816 103 GELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+...+.+.|.+ +||.+.+. +...+|++++. .+.++++..++.|.++.+.+.
T Consensus 516 ~~~~l~~~L~e-~GI~v~~~------~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 516 PATIVANYLRD-HGIIPEKS------DLNSILFLMTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp CHHHHHHHHHH-TTCCCSEE------CSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-CCcEEEEC------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 67888988876 69988642 25788988865 477889999999988876653
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0016 Score=49.90 Aligned_cols=140 Identities=9% Similarity=0.047 Sum_probs=74.2
Q ss_pred CCCCcee-EEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 2 LSLPGFR-ISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 2 ~~~~G~R-iG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
+|.+|.+ +||+++ ++++++.+....... ..++....++...+ +.+....+...++...+.+.|+++ .+
T Consensus 232 lg~~g~~~~G~l~~-~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l-------~~l~~r~~~~~~n~~~l~~~L~~~~~v 303 (415)
T 2fq6_A 232 LVGHSDAMIGTAVC-NARCWEQLRENAYLMGQMVDADTAYITSRGL-------RTLGVRLRQHHESSLKVAEWLAEHPQV 303 (415)
T ss_dssp TTCSSSCCCEEEEE-CTTTHHHHHHHHHHTTCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred cCCCCCceEEEEEe-CHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 5677765 699999 777878777665432 23433333332222 223334444566777777777765 22
Q ss_pred c-cccC----------------CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCC----------------
Q 042816 78 E-CAKS----------------NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSS---------------- 124 (163)
Q Consensus 78 ~-~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~---------------- 124 (163)
. +..| ..|..+++.++... +..+...+.+.| +..++.+.-|+.
T Consensus 304 ~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~---~~~~~~~~l~~l-~~~~~a~s~G~~~s~~~~~~p~~~s~~~ 379 (415)
T 2fq6_A 304 ARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL---NNEELANYLDNF-SLFSMAYSWGGYESLILANQPEHIAAIR 379 (415)
T ss_dssp EEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC---CHHHHHHHHTTC-SSCEECSCCCSSSCEEEEECHHHHHTTC
T ss_pred eEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCC---CHHHHHHHHHhC-CcCeEeccCCCCceeEEecCCCcccccc
Confidence 1 1111 13456777886420 001344555443 223455554422
Q ss_pred ----CCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 125 ----CHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 125 ----f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
.+ ..++.+|+|++. ++.++.++.+.++++
T Consensus 380 ~~~~~g-~~~~~iRlS~G~---e~~~d~i~~l~~al~ 412 (415)
T 2fq6_A 380 PQGEID-FSGTLIRLHIGL---EDVDDLIADLDAGFA 412 (415)
T ss_dssp TTCCCC-CCSCEEEEECCS---SCHHHHHHHHHHHHH
T ss_pred chhhcC-CCCCEEEEEecC---CCHHHHHHHHHHHHH
Confidence 11 125899999997 344555555655554
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0096 Score=46.72 Aligned_cols=105 Identities=11% Similarity=0.108 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-CCcccc-CCceeEEEeecCCcccC--C--Chhh-----HHHHHHHHHHhcCeEEc
Q 042816 52 KFININRERLRRLYVKFVAGLRQL-GIECAK-SNGGFYCWADMSGLISS--Y--SEKG-----ELELWDKLLNVAKVNVT 120 (163)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~~~g~~~~~~~~~~~~~--~--~~~~-----~~~~~~~l~~~~gi~v~ 120 (163)
..+++..+...++.+++.+.|+++ |+++.. |..+.+.|...|..+.. . .... ...+.+.|.+ .|+...
T Consensus 397 ~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~-~G~~~~ 475 (515)
T 2jis_A 397 QGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVK-EGSMMI 475 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHH-HTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHh-cCCEEE
Confidence 335677788888999999999988 877764 45565555444432211 0 0000 1125566665 575432
Q ss_pred CCCCCCCCCCceEEEEEe-c-CChhHHHHHHHHHHHHHHH
Q 042816 121 PGSSCHCIEPGWFSFSFT-L-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 121 pg~~f~~~~~~~iRi~~~-~-~~~~~l~~~~~~l~~~~~~ 158 (163)
+.... ....+++|++++ . .+.++++.+++.|.+++++
T Consensus 476 ~~~~~-~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 476 GYQPH-GTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp EEEEE-TTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEEEE-CCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 11111 112579999995 2 3888999999999887654
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0038 Score=48.50 Aligned_cols=147 Identities=10% Similarity=0.000 Sum_probs=85.8
Q ss_pred CceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLG--- 76 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g--- 76 (163)
.|+-+|.+++ .+++.+.+..... .++.++++-.++.+.|+ ++.. .++.+++-+.+.++.+.+.+.+...+
T Consensus 299 gg~P~~av~~-~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~~l-~~~~~~~g~~l~~~L~~l~~~~~~~~~~~ 376 (456)
T 4atq_A 299 GGLPLSAITG-RADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHDL-NGRARHIEELALGKLRELAAELSAGGGSV 376 (456)
T ss_dssp TTSSCEEEEE-EHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHCC-----C
T ss_pred CcCCceeeEe-cHHHHhcccccCCCCCCCCChHHHHhhHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHHhcccccCCc
Confidence 4677899999 8888777654433 24667777666665554 2222 33444444444444444444332211
Q ss_pred CccccCCceeEEEeecCCcc-cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 77 IECAKSNGGFYCWADMSGLI-SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 77 ~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
+.-.+.. |+++-+++.... ..+...-...++..+++ +||++.++-.+ .+.+||.... ++++++++++++|.+
T Consensus 377 v~~VRG~-Gl~~giel~~~~~~~~~~~~~~~v~~~~~~-~Gvl~~~~g~~----~~~irl~PpL~it~~~id~~l~~l~~ 450 (456)
T 4atq_A 377 VGDIRGR-GAMLAIELVQPGSKEPNAELTKAVAAACLK-EGVIILTCGTY----GNVIRLLPPLVISDELLIDGLEVLAA 450 (456)
T ss_dssp EEEEEEE-TTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECEEECTT----SCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred eEEeeec-ceEEEEEEecCCCCCcCHHHHHHHHHHHHH-CCCEEEecCCC----CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1112222 455556664321 12222345678888876 89998864222 3678888653 488999999999999
Q ss_pred HHHHh
Q 042816 155 ISQTC 159 (163)
Q Consensus 155 ~~~~~ 159 (163)
+++.+
T Consensus 451 al~a~ 455 (456)
T 4atq_A 451 AIKAH 455 (456)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 98764
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.012 Score=45.64 Aligned_cols=144 Identities=13% Similarity=0.110 Sum_probs=83.6
Q ss_pred CCceeEEEEEecCH---------------HHHHHHHHhhcc-cCCCh-HHHHHH-HHhcCChHHHHHHHHHHHHHHHHHH
Q 042816 4 LPGFRISVIYSYNN---------------SVLAAAKKLARF-SSVSA-PSQNLL-VSMLSDTKFVQKFININRERLRRLY 65 (163)
Q Consensus 4 ~~G~RiG~~i~~~~---------------~~~~~~~~~~~~-~~~s~-~~q~~~-~~~l~~~~~~~~~~~~~~~~~~~~~ 65 (163)
++|=|-|.|.+ ++ ++.+.+.+.--+ ...++ ....++ +.++.+. +....+...+...++.
T Consensus 268 LrGPrGG~Il~-~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea--~~p~fk~Ya~qVv~NA 344 (490)
T 3ou5_A 268 LRGARSGLIFY-RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQA--CTPMFREYSLQVLKNA 344 (490)
T ss_dssp TCSCSCEEEEE-ECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHH
T ss_pred ccCCCceEEEe-ccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHH--HhHhHHHHHHHHHHHH
Confidence 57889999988 43 466777666544 22222 222221 1222211 0122234445555689
Q ss_pred HHHHHHhhhcCCcccc-CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc----CCCCCCCCCCceEEEEEec-
Q 042816 66 VKFVAGLRQLGIECAK-SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT----PGSSCHCIEPGWFSFSFTL- 139 (163)
Q Consensus 66 ~~l~~~l~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----pg~~f~~~~~~~iRi~~~~- 139 (163)
+.|.+.|.+.|+++.. ..-+=.+++++...- .+..+..+ +|++.||.+. |++. ....+..|||....
T Consensus 345 kaLA~~L~~~G~~vvsGgTdnHlvLvDl~~~g-----~tG~~ae~-~Le~agItvNkN~iP~D~-sp~~~SGiRiGTpa~ 417 (490)
T 3ou5_A 345 RAMADALLERGYSLVSGGTDNHLVLVDLRPKG-----LDGARAER-VLELVSITANKNTCPGDR-SAITPGGLRLGAPAL 417 (490)
T ss_dssp HHHHHHHHHTTCEEGGGSCSSSEEEEECGGGT-----CCHHHHHH-HHHHTTEECEEECCTTCC-CSSSCSEEEEESHHH
T ss_pred HHHHHHHHhCCCeeecCCCCceEEEEeccccC-----CCHHHHHH-HHHHcCcEECCCCCCCCC-CCCCCCeeEECCHHH
Confidence 9999999999988763 333345677875421 14455555 5566999875 4431 11126789999754
Q ss_pred ----CChhHHHHHHHHHHHHHH
Q 042816 140 ----LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 140 ----~~~~~l~~~~~~l~~~~~ 157 (163)
..++++++..+.|.+++.
T Consensus 418 TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 418 TSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHH
Confidence 356777777777766553
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0079 Score=45.95 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=18.8
Q ss_pred CceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 130 PGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 130 ~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
++.+|+|++. +++++.++.|.+++
T Consensus 397 ~~~vRlS~g~---e~~~~li~~l~~al 420 (421)
T 2ctz_A 397 PEMVRLSVGL---EHVEDLKAELKEAL 420 (421)
T ss_dssp TTEEEEECCS---SCHHHHHHHHHHHT
T ss_pred CCeEEEEeCC---CCHHHHHHHHHHHh
Confidence 5899999986 57777788777654
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.12 Score=40.34 Aligned_cols=138 Identities=7% Similarity=0.048 Sum_probs=77.4
Q ss_pred eeEEEEEecCHHHHHHHHHhh----c-----ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 7 FRISVIYSYNNSVLAAAKKLA----R-----FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~----~-----~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+-+|.+++ .+++.+.+.... . .++-++++-.++.+.|+ +... .+..+++-+.++++.+. |.+
T Consensus 312 ~Pl~av~~-~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l-~~~~~~~g~~l~~~L~~----l~~ 385 (473)
T 4e3q_A 312 FPMGAVIL-GPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGL-AENVRRLAPRFEERLKH----IAE 385 (473)
T ss_dssp SCCEEEEE-CHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSH-HHHHHHHHHHHHHHHHH----HTT
T ss_pred CCcccccc-cHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccccH-HHHHHHHHHHHHHHHHH----Hhc
Confidence 78999999 899988886532 1 13456666665555553 2211 23333333333333222 222
Q ss_pred c-CCccccCCceeEEEeecCCcc--cC---CChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHH
Q 042816 75 L-GIECAKSNGGFYCWADMSGLI--SS---YSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHV 147 (163)
Q Consensus 75 ~-g~~~~~~~~g~~~~~~~~~~~--~~---~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~ 147 (163)
. .+.-.+.. |+++-+++...- +. .+..-...+.+.+++ +||++.|. .+.+|++... ++++++++
T Consensus 386 ~~~v~~vRG~-Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~-------g~~i~l~PPL~it~~eid~ 456 (473)
T 4e3q_A 386 RPNIGEYRGI-GFMWALEAVKDKASKTPFDGNLSVSERIANTCTD-LGLICRPL-------GQSVVLCPPFILTEAQMDE 456 (473)
T ss_dssp STTEEEEEEE-TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH-TTEECEEE-------TTEEEECCCTTCCHHHHHH
T ss_pred CCCeeEEeec-ceEEEEEEecCccccccccccHHHHHHHHHHHHH-CCcEEEec-------CCEEEEeCCCCCCHHHHHH
Confidence 2 33222333 344445542211 00 011135677887776 89998863 2467876532 48899999
Q ss_pred HHHHHHHHHHHh
Q 042816 148 VMERIRRISQTC 159 (163)
Q Consensus 148 ~~~~l~~~~~~~ 159 (163)
++++|.+++++.
T Consensus 457 ~~~~l~~al~~v 468 (473)
T 4e3q_A 457 MFDKLEKALDKV 468 (473)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.13 Score=42.56 Aligned_cols=50 Identities=10% Similarity=0.008 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 103 GELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
+...+.++|.+ +||.+... +.+.+|++++. .+.++++..++.|.++.+.+
T Consensus 555 ~~~~l~~~L~~-~gI~~e~~------~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 555 PAALVTAWLGR-HGIVPTRT------TDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp CHHHHHHHHHT-TTCCCSEE------CSSEEEEECCTTCCTTTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-CCCEEeec------CCCeEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence 55788887765 89887432 26789999875 37778888888888776554
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.029 Score=43.15 Aligned_cols=97 Identities=4% Similarity=-0.146 Sum_probs=59.2
Q ss_pred CCCc-eeEEEEEecCHHHHHHHHHhhc--ccC--CCh-HH-HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 3 SLPG-FRISVIYSYNNSVLAAAKKLAR--FSS--VSA-PS-QNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 3 ~~~G-~RiG~~i~~~~~~~~~~~~~~~--~~~--~s~-~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
|.+| .+.||+++ ++++++.+..... ..+ .++ +. ...+...+ ..+....+...++...+.+.|+++
T Consensus 247 gg~g~~~gG~i~~-~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl-------~~~~~r~~~~~~~a~~la~~L~~~ 318 (427)
T 3i16_A 247 GGGIAPTGGYLAG-TKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGL-------FLAPHISMEALKGAILCSRIMELA 318 (427)
T ss_dssp GTTTCCSCEEEEE-CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCceEEEEEE-CHHHHHHHHHhcccCccCccCCccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344 67899999 9999999988543 121 121 21 11111111 223566777788899999999999
Q ss_pred CCccccCCce----eEEEeecCCcccCCChhhHHHHHHHHHH
Q 042816 76 GIECAKSNGG----FYCWADMSGLISSYSEKGELELWDKLLN 113 (163)
Q Consensus 76 g~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 113 (163)
|+++.+..+. +.+.+.+... .....|++.|..
T Consensus 319 g~~V~p~~~~~~~~~i~~i~l~~~------~~~~~f~~~l~~ 354 (427)
T 3i16_A 319 GFEVMPKYDEKRSDIIQSIKFNDK------DKLIEFCKGIQT 354 (427)
T ss_dssp TCEEESCTTSCCSSSCEEEECSSH------HHHHHHHHHHHH
T ss_pred CCeecCCCCCCCccEEEEEEECCH------HHHHHHHHHHhh
Confidence 8877543221 2444555432 366788888765
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.12 Score=39.53 Aligned_cols=97 Identities=5% Similarity=-0.148 Sum_probs=58.3
Q ss_pred CCCc-eeEEEEEecCHHHHHHHHHhhcc--c---CCChHH-HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 3 SLPG-FRISVIYSYNNSVLAAAKKLARF--S---SVSAPS-QNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 3 ~~~G-~RiG~~i~~~~~~~~~~~~~~~~--~---~~s~~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
|.+| .+.||+++ ++++++.+...... . ....+. +.++...+ ......++...++..++.+.|+++
T Consensus 230 gg~~~~~GG~v~~-~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl-------~~~~~r~~~~~~~a~~la~~L~~~ 301 (409)
T 3jzl_A 230 GGGLAKTGGYIAG-KEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGF-------FLAPHVTAQAIKGARFTAAMLAEF 301 (409)
T ss_dssp GTTTCSSCEEEEE-CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccCCceEEEEEe-CHHHHHHHHHHhccccccccccccHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344 45699999 99999999875431 1 111221 22222222 223455666788899999999999
Q ss_pred CCccccCCc----eeEEEeecCCcccCCChhhHHHHHHHHHH
Q 042816 76 GIECAKSNG----GFYCWADMSGLISSYSEKGELELWDKLLN 113 (163)
Q Consensus 76 g~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 113 (163)
|+++.+... .+.+.+.++.. .....|++.|..
T Consensus 302 g~~v~p~~~~~~~~~i~~i~l~~~------~~~~~~~~~L~~ 337 (409)
T 3jzl_A 302 GVEADPVWDAPRTDLIQSVSFHNK------EKMVAFAQAIQA 337 (409)
T ss_dssp TCEEESCTTSCCSSSCCEEECSCH------HHHHHHHHHHHH
T ss_pred CCcccCCCCCCCccEEEEEEeCCH------HHHHHHHHHHHh
Confidence 887744322 22344455432 367788888866
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.38 E-value=1.4 Score=34.44 Aligned_cols=147 Identities=14% Similarity=0.224 Sum_probs=88.4
Q ss_pred EEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CCccccC-Cce
Q 042816 11 VIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----GIECAKS-NGG 85 (163)
Q Consensus 11 ~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~~-~~g 85 (163)
.+...++++++.+...-.--.+++++-.....++.-+ .+-++++.+...++.+++.+.|+++ |-++... ...
T Consensus 294 ii~~~d~e~l~~~~~~yPGr~S~Spsldl~~tLL~lG---r~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~ 370 (501)
T 3hl2_A 294 IIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLG---SNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNP 370 (501)
T ss_dssp EEEESCHHHHHHHHHTSCSCBCSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCS
T ss_pred EEEeCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCc
Confidence 3435577887776443321234556555555565555 3444666666677777777777664 5444433 345
Q ss_pred eEEEeecCCcccCCChhhHHHHHHHHHHhcCeE----EcCCC----------CCCCCC----CceEEEEEec-CChhHHH
Q 042816 86 FYCWADMSGLISSYSEKGELELWDKLLNVAKVN----VTPGS----------SCHCIE----PGWFSFSFTL-LTEKDIH 146 (163)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~----v~pg~----------~f~~~~----~~~iRi~~~~-~~~~~l~ 146 (163)
+.+-+.+...- .....+...+...|.. .+|. |.+|. .|+... -.|+-++.+- ...++++
T Consensus 371 is~a~tl~~~~-~~~~~~~t~~gs~Lf~-r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~ 448 (501)
T 3hl2_A 371 ISLAMTLKTLD-EHRDKAVTQLGSMLFT-RQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVD 448 (501)
T ss_dssp SEEEEECTTSC-TTTSCHHHHHHHHHHH-TTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHH
T ss_pred eeEEEeccccc-ccccccHHHHHHHHHh-cCCCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHH
Confidence 55556665431 1111245677777776 5553 45566 665421 4577777643 4889999
Q ss_pred HHHHHHHHHHHHhhhc
Q 042816 147 VVMERIRRISQTCKSH 162 (163)
Q Consensus 147 ~~~~~l~~~~~~~~~~ 162 (163)
.++++|.+++.++++.
T Consensus 449 ~~~~~l~~~~~~~~~~ 464 (501)
T 3hl2_A 449 LFIKRLDRCLKAVRKE 464 (501)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887653
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.12 Score=39.68 Aligned_cols=93 Identities=8% Similarity=-0.080 Sum_probs=56.8
Q ss_pred eeEEEEEecCHHHHHHHHHhhcc--cC--CCh-HH-HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 7 FRISVIYSYNNSVLAAAKKLARF--SS--VSA-PS-QNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~~~--~~--~s~-~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.+.||+++ ++++++.+...... .+ .++ +. ...+...+ .......+...++..++.+.|+++|+++.
T Consensus 252 ~~GG~i~~-~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl-------~~~~~r~~~~~~~a~~la~~L~~~g~~V~ 323 (427)
T 3hvy_A 252 TTGGYIAG-KEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGL-------FMAPHVTIEAVKGAVFCARIMELAGFDVL 323 (427)
T ss_dssp CSCEEEEE-CHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ceEEEEEE-CHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhH-------hHHHHHHHHHHHHHHHHHHHHHhCCCeec
Confidence 56799999 99999999885431 21 111 22 22222222 22345566677889999999999988775
Q ss_pred cCCc----eeEEEeecCCcccCCChhhHHHHHHHHHH
Q 042816 81 KSNG----GFYCWADMSGLISSYSEKGELELWDKLLN 113 (163)
Q Consensus 81 ~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 113 (163)
+..+ .+.+.+.+... ....+|++.|..
T Consensus 324 p~~~~~~~~li~~~~l~~~------~~~~~f~~~l~~ 354 (427)
T 3hvy_A 324 PKYNDKRTDIIQAIKFNDE------KKLIDFIKGIQT 354 (427)
T ss_dssp SCTTSCCSSSEEEEECSSH------HHHHHHHHHHHH
T ss_pred CCCCCCCceEEEEEeCCCH------HHHHHHHHHhcc
Confidence 4322 22455555432 356788887765
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.099 Score=40.18 Aligned_cols=94 Identities=7% Similarity=-0.015 Sum_probs=56.9
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc--cC--C-ChHH-HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF--SS--V-SAPS-QNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG 76 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~--~-s~~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 76 (163)
+++| ||+++ ++++++.+...... .+ . .++. +.++...+ ..+....+...++..++.+.|+++|
T Consensus 240 ~~~G---G~v~~-~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~~a~~l~~~L~~~g 308 (431)
T 3ht4_A 240 VKTG---GYIVG-KEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGF-------FLAPHVAGQALKGAIFTAAFLEKLG 308 (431)
T ss_dssp CSSC---EEEEE-CHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCce---EEEEe-cHHHHHHHHHHhccCCcccccCccHHHHHHHHhHh-------hhHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3556 99999 99999999875542 11 1 1111 22222211 2234556677788899999999988
Q ss_pred CccccC----CceeEEEeecCCcccCCChhhHHHHHHHHHH
Q 042816 77 IECAKS----NGGFYCWADMSGLISSYSEKGELELWDKLLN 113 (163)
Q Consensus 77 ~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 113 (163)
+++.+. ..++.+.+.++.. ....++++.|.+
T Consensus 309 ~~v~p~~~~~~~~li~~i~l~~~------~~~~~~~~~l~~ 343 (431)
T 3ht4_A 309 MNTSPAWNAPRTDLIQSVQFDDK------DRMIAFCQAIQY 343 (431)
T ss_dssp CCEESCTTSCCSSSCCEEECCCH------HHHHHHHHHHHH
T ss_pred CEecCCCCCCCccEEEEEEeCCH------HHHHHHHHHHHh
Confidence 777432 2223445556532 356788888766
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=84.01 E-value=3.2 Score=34.16 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHH
Q 042816 103 GELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
+...+.++|. ++||.+--.+ ..++-+-++. .+.+++...++.|.++-+
T Consensus 510 ~g~~~~~~L~-~~~I~~E~~d------~~~vl~l~s~g~~~~~~~~L~~aL~~~~~ 558 (715)
T 3n75_A 510 PASIVAKYLD-EHGIVVEKTG------PYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (715)
T ss_dssp CHHHHHHHHH-HTTCCCSEEE------TTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-HCCCEEEecC------CCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 5567888775 4799875332 3334443332 266666666666665544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 163 | ||||
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 5e-23 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 5e-22 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 1e-17 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 5e-17 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 6e-17 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-13 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 5e-13 | |
| d1bw0a_ | 412 | c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try | 9e-13 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 3e-11 | |
| d2r5ea1 | 418 | c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans | 4e-11 | |
| d1wsta1 | 403 | c.67.1.1 (A:13-415) Multiple substrate aminotransf | 2e-10 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 2e-10 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 2e-10 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 3e-10 | |
| d1c7na_ | 394 | c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax | 1e-09 | |
| d1vp4a_ | 420 | c.67.1.1 (A:) Putative aminotransferase TM1131 {Th | 3e-09 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 3e-08 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 5e-08 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 7e-08 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 7e-08 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 4e-07 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 4e-07 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 2e-06 | |
| d1lc5a_ | 355 | c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxyl | 2e-06 | |
| d2gb3a1 | 389 | c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog | 2e-05 |
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 91.6 bits (226), Expect = 5e-23
Identities = 66/152 (43%), Positives = 100/152 (65%)
Query: 3 SLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLR 62
LPGFR+ IYS ++ V+AAA K++ F VS+ +Q+LL +MLSD K + +I N +RL+
Sbjct: 274 GLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLK 333
Query: 63 RLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPG 122
+ K V+GL++ GI C N G +CW DM L+ S + + E+ELW K++ +N++PG
Sbjct: 334 QRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPG 393
Query: 123 SSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
SSCHC EPGWF F L E+ + + M+R++
Sbjct: 394 SSCHCTEPGWFRVCFANLPERTLDLAMQRLKA 425
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 88.9 bits (219), Expect = 5e-22
Identities = 62/152 (40%), Positives = 93/152 (61%)
Query: 3 SLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLR 62
LPGFR+ +IYS+N+ V+ A+K++ F VS +Q L +MLSD KFV F+ + RL
Sbjct: 271 GLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLG 330
Query: 63 RLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPG 122
+ + F GL +GI+C K+N G +CW D+ L+ + E+ LW ++N K+NV+PG
Sbjct: 331 KRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPG 390
Query: 123 SSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
SS C EPGWF F + + + + + RIRR
Sbjct: 391 SSFECQEPGWFRVCFANMDDGTVDIALARIRR 422
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 76.5 bits (187), Expect = 1e-17
Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 15/160 (9%)
Query: 2 LSLPGFRISVIYSYNNS-----VLAAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFIN 55
G+R+ +Y + V A +LAR + P+Q ++ L+ ++
Sbjct: 239 YFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP---MDYLK 295
Query: 56 INRERLRRLYVKFVAGLRQLG-IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNV 114
++L+ L ++ I K G FY + I K + E +L+
Sbjct: 296 EYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPK----IEVGPWKNDKEFVLDVLHN 351
Query: 115 AKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
A V GS G F F + + M+R +
Sbjct: 352 AHVLFVHGSGFGEYGAGHFRAVFL-PPIEILEEAMDRFEK 390
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 74.4 bits (182), Expect = 5e-17
Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 11/155 (7%)
Query: 2 LSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERL 61
++ G+R+ + L A + S S ++ + Q +
Sbjct: 239 YAMTGWRVGFLAGPVP--LVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAF 296
Query: 62 RRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT 120
+ L + G+EC K +G FY + ++ S L+ +LL+ +V
Sbjct: 297 AERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGRS-----SLDFCSELLDQHQVATV 351
Query: 121 PGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155
PG++ S+ I MER+ +
Sbjct: 352 PGAAFGA--DDCIRLSYA-TDLDTIKRGMERLEKF 383
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 74.4 bits (182), Expect = 6e-17
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 12/156 (7%)
Query: 2 LSLPGFRISVIYSYNNSVLAAAKKLARFSS--VSAPSQNLLVSMLSDTKFVQKFININRE 59
++ G+RI V+ A ++R S+ +Q + L++ + + F+ + RE
Sbjct: 236 FAMTGWRIGYACG-PKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMARE 294
Query: 60 RLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNV 119
RR + GL LG++ + +G FY D S + E+ ++LL A V V
Sbjct: 295 AYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAPD-----EVRAAERLLE-AGVAV 348
Query: 120 TPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155
PG+ G S+ +E+++ +ER R+
Sbjct: 349 VPGTDFAA--FGHVRLSYA-TSEENLRKALERFARV 381
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 65.2 bits (158), Expect = 1e-13
Identities = 25/154 (16%), Positives = 56/154 (36%), Gaps = 6/154 (3%)
Query: 2 LSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERL 61
++ G+R+ + + + + K ++ + + K + R+
Sbjct: 234 FAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEY 293
Query: 62 RRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP 121
R L ++G+ K G FY + + + + + +L A+V V P
Sbjct: 294 DRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRDTGLT-----SKKFSELMLKEARVAVVP 348
Query: 122 GSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155
GS+ G+ S+ E + M+R+ R+
Sbjct: 349 GSAFGKAGEGYVRISYATAYE-KLEEAMDRMERV 381
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 63.2 bits (152), Expect = 5e-13
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 57 NRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAK 116
RE RR GLR +G+ G ++ A++ G + +L+ A+
Sbjct: 279 LREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWDA-----------FRLVEEAR 327
Query: 117 VNVTPGSSCHCIEP--GWFSFSFTLLTEKDIHVVMERIRRI 155
V + P S+ + +P F F+F TE+++H+ +ER+ R+
Sbjct: 328 VALIPASAFYLEDPPKDLFRFAFC-KTEEELHLALERLGRV 367
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Score = 62.6 bits (150), Expect = 9e-13
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSF 135
G+ G Y + + K ++E ++KLL V V PG+ H PG+
Sbjct: 331 GLAPTMPRGAMYLMSRIDLEKYR-DIKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRL 387
Query: 136 SFTLLTEKDIHVVMERIRRISQTCKSHS 163
+ T + + V E + RI C+ H+
Sbjct: 388 TTT----RPVEVYREAVERIKAFCQRHA 411
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 58.2 bits (139), Expect = 3e-11
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 9/108 (8%)
Query: 51 QKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDK 110
+ + R+ V L + +E G ++ D S + + E
Sbjct: 281 PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTLDDV----EFCQW 336
Query: 111 LLNVAKVNVTPGSSCHCIEP---GWFSFSFTLLTEKDIHVVMERIRRI 155
L V P S C +P F E + ER+R++
Sbjct: 337 LTQEHGVAAIPL-SVFCADPFPHKLIRLCFA-KKESTLLAAAERLRQL 382
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Score = 57.9 bits (138), Expect = 4e-11
Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 12/115 (10%)
Query: 51 QKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGEL----- 105
+ + N L + L ++G+ GG++ AD S L S E
Sbjct: 300 ECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKD 359
Query: 106 -ELWDKLLNVAKVNVTPGSSCHCIEP-----GWFSFSFTLLTEKDIHVVMERIRR 154
+ + P S+ + + + F ++++ E +R+
Sbjct: 360 YRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF-KKDENLQKAAEILRK 413
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Score = 55.8 bits (133), Expect = 2e-10
Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 12/156 (7%)
Query: 5 PGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRL 64
PGFRI + ++ + + + + + ++ + I E +
Sbjct: 247 PGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPR 306
Query: 65 YVKFVAGLRQ---LGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTP 121
+ L + G+E K GG + + I + + ++ + V P
Sbjct: 307 RDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGIDT------KLMMERAVA-KGVAYVP 359
Query: 122 GS--SCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155
G H + +FT + E+ I + R+
Sbjct: 360 GEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAET 395
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 55.8 bits (133), Expect = 2e-10
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Query: 73 RQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGW 132
+++G++ + G FY + + G +++ ++LL KV + PGS+ +PG+
Sbjct: 301 KKMGVKFVEPEGAFYLFFKVRG--------DDVKFCERLLEEKKVALVPGSAFL--KPGF 350
Query: 133 FSFSFTLLTEKDIHVVMERIRRISQTCKS 161
SF I + E + RI S
Sbjct: 351 VRLSFA----TSIERLTEALDRIEDFLNS 375
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 55.5 bits (133), Expect = 2e-10
Identities = 21/171 (12%), Positives = 46/171 (26%), Gaps = 19/171 (11%)
Query: 2 LSLPGFRISVIYSYNNSVLAAAKKLARFSS--VSAPSQNLLVSMLSD--------TKFVQ 51
G R + SV ++ +Q + +L + ++
Sbjct: 253 TGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMR 312
Query: 52 KFININRERLRRLYVKFVAGLRQLGIECAK--SNGGFYCWADMSGLISSY-----SEKGE 104
++LR +V A L Q + + + S E E
Sbjct: 313 DLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEE 372
Query: 105 LELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155
+ + ++N G + S T+ D +M ++ +
Sbjct: 373 DKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLI-KTQDDFDQLMYYLKDM 421
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.5 bits (132), Expect = 3e-10
Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 13/94 (13%)
Query: 73 RQLGIECAKSNGGFYCWADMSGLISSY-------SEKGELELWDKLLNVAKVNVTPGSSC 125
+ +G++ G ++ D+S E + ++ + P S
Sbjct: 322 QSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIF 381
Query: 126 HCIE-----PGWFSFSFTLLTEKDIHVVMERIRR 154
+ + + F F E + + E++R+
Sbjct: 382 YSVPHQKHFDHYIRFCFV-KDEATLQAMDEKLRK 414
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Score = 53.7 bits (127), Expect = 1e-09
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 6/78 (7%)
Query: 77 IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFS 136
I+ G + W D L + + +++ A++ G G+ +
Sbjct: 317 IKAPLIEGTYLQWIDFRALKMD-----HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERIN 371
Query: 137 FTLLTEKDIHVVMERIRR 154
I +ER+ +
Sbjct: 372 LA-APSSVIQESLERLNK 388
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Score = 52.5 bits (124), Expect = 3e-09
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE--PGWF 133
G++ KS GG + W + + E+++ KV PG +
Sbjct: 335 GVKWVKSEGGLFIWLTLPEGFDT------WEMFEYAKR-KKVFYVPGRVFKVYDEPSPSM 387
Query: 134 SFSFTLLTEKDIHVVMERIRRI 155
SF L ++ I ++R+R +
Sbjct: 388 RLSFCLPPDEKIVEGIKRLREV 409
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 49.6 bits (117), Expect = 3e-08
Identities = 13/136 (9%), Positives = 42/136 (30%), Gaps = 28/136 (20%)
Query: 29 FSSVSAPSQNLLVSMLSDTKF---VQKFININRERLRRLYVKFVAGLRQLGIECA----K 81
+S+ + +L+ + + +R+ + + V+ L++ G
Sbjct: 287 YSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIT 346
Query: 82 SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLT 141
G +C+ + E ++L + +T S +
Sbjct: 347 DQIGMFCFTGLKP-----------EQVERLTKEFSIYMTKDGR----------ISVAGVA 385
Query: 142 EKDIHVVMERIRRISQ 157
++ + I ++++
Sbjct: 386 SSNVGYLAHAIHQVTK 401
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 48.8 bits (115), Expect = 5e-08
Identities = 19/172 (11%), Positives = 47/172 (27%), Gaps = 40/172 (23%)
Query: 3 SLPGFRISVIYSYNNSV----------LAAAKKLARFSSVSAPSQN-----LLVSMLSDT 47
+ G R+ + + K+ R + P+ L+ T
Sbjct: 257 GMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELT 316
Query: 48 KFVQKFININRERLRRLYVKFVAGLRQLGIECA----KSNGGFYCWADMSGLISSYSEKG 103
+ K + R+ ++ L +LG + G + + ++
Sbjct: 317 EQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTP--------- 367
Query: 104 ELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155
++ +L V + S L + ++ V + I +
Sbjct: 368 --QMVKRLEETHAVYLVASG----------RASIAGLNQGNVEYVAKAIDEV 407
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 48.4 bits (114), Expect = 7e-08
Identities = 20/168 (11%), Positives = 53/168 (31%), Gaps = 36/168 (21%)
Query: 3 SLPGFRISVIYSYNNSVLAAAKKLAR--------FSSVSAPSQNLLVSMLSDTKF---VQ 51
L R+ + ++ +S+ A +++ ++LS+ +
Sbjct: 249 GLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWE 308
Query: 52 KFININRERLRRLYVKFVAGLRQLGIECA----KSNGGFYCWADMSGLISSYSEKGELEL 107
+ + R+R++R+ FV L++ G G + ++ ++ E
Sbjct: 309 QELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTK-----------EQ 357
Query: 108 WDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155
+L V + +T ++ + E I +
Sbjct: 358 VLRLREEFGVYAVASGR----------VNVAGMTPDNMAPLCEAIVAV 395
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 48.4 bits (114), Expect = 7e-08
Identities = 21/167 (12%), Positives = 51/167 (30%), Gaps = 36/167 (21%)
Query: 3 SLPGFRISVIYSYNNSVLAAAKKLAR--------FSSVSAPSQNLLVSMLSDTKFVQKF- 53
L R+ + + + L++ +S+ A ++ LSD + ++
Sbjct: 261 GLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWT 320
Query: 54 --ININRERLRRLYVKFVAGLRQLGIECA----KSNGGFYCWADMSGLISSYSEKGELEL 107
+ +R+ + + A L L G + + ++ +
Sbjct: 321 GNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNP-----------KQ 369
Query: 108 WDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154
+ L+N + + P + LT K++ V I
Sbjct: 370 VEYLINQKHIYLLPSGR----------INMCGLTTKNLDYVATSIHE 406
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 46.0 bits (107), Expect = 4e-07
Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 6/76 (7%)
Query: 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT 138
+ W D+ L + L L+ KV + PG + G+ +
Sbjct: 286 WQIPQSTYLAWLDLRPLNID-----DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG 340
Query: 139 LLTEKDIHVVMERIRR 154
+ + +
Sbjct: 341 -CPRSKLEKGVAGLIN 355
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 46.1 bits (108), Expect = 4e-07
Identities = 22/168 (13%), Positives = 47/168 (27%), Gaps = 36/168 (21%)
Query: 3 SLPGFRISVIYSYNNSVLAAAKKLAR--------FSSVSAPSQNLLVSMLSDTKFVQKFI 54
SL G R+ + AA + L + +SS ++ ++L+D ++
Sbjct: 250 SLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWL 309
Query: 55 NINR---ERLRRLYVKFVAGLRQLGIECA----KSNGGFYCWADMSGLISSYSEKGELEL 107
R+ + + V L E + G + + +S
Sbjct: 310 AEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSA-----------AQ 358
Query: 108 WDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155
D+L V + L ++ V + +
Sbjct: 359 VDRLREEFGVYLIASG----------RMCVAGLNTANVQRVAKAFAAV 396
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 44.2 bits (103), Expect = 2e-06
Identities = 12/113 (10%), Positives = 27/113 (23%), Gaps = 25/113 (22%)
Query: 48 KFVQKFININRERLRRLYVKFVAGLRQLGIECA----KSNGGFYCWADMSGLISSYSEKG 103
+ R + RL + LR L + G + +
Sbjct: 302 ADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATP--------- 352
Query: 104 ELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156
E ++ + + S + L + I ++ I +
Sbjct: 353 --EQVKRIKEEFGIYMVGDS----------RINIAGLNDNTIPILARAIIEVG 393
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Score = 44.0 bits (102), Expect = 2e-06
Identities = 12/103 (11%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 53 FININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLL 112
+ LR +F L QL + Y E+ +++L +LL
Sbjct: 263 WQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLLRC--------EREDIDLQRRLL 314
Query: 113 NVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155
++ + ++ ++ ++ + + ++ +R +
Sbjct: 315 T-QRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNV 354
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Score = 41.0 bits (94), Expect = 2e-05
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 6/82 (7%)
Query: 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE---PGW 132
K +G FY A++ + E L D ++ V P +
Sbjct: 304 LKRFTKPSGAFYITAELPVEDA--EEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKE 361
Query: 133 FSFSFTLLTEKDIHVVMERIRR 154
+ L + + ++ +
Sbjct: 362 IRIACV-LEKDLLSRAIDVLME 382
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 163 | |||
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.97 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.96 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.95 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.95 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.95 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.94 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.94 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.94 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.94 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.93 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.93 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.93 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.92 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.92 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.92 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.91 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.91 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.9 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.89 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.88 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.87 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.81 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.79 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.76 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.76 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.7 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.69 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.4 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 98.98 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 98.96 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 98.81 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 98.61 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 98.44 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 98.34 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 98.33 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 98.24 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 98.21 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 98.15 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 98.07 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.05 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 98.03 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 98.01 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 97.89 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 97.88 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 97.68 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 97.58 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 97.51 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 97.49 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 97.44 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 97.37 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 97.22 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 97.18 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 97.16 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 97.1 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 97.08 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 97.03 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 97.0 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 96.97 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 96.96 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 96.86 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 96.72 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 96.72 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 96.64 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 96.62 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 96.39 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 95.96 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 95.63 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 95.4 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 95.31 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 95.14 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 94.72 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 93.96 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 92.84 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 92.07 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 91.76 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 88.51 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 88.01 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 86.3 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 85.25 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 84.09 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 80.9 |
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.97 E-value=3.1e-29 Score=192.07 Aligned_cols=160 Identities=40% Similarity=0.816 Sum_probs=142.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+|++||+|+||++++++.+.+.+.....+..++.+.|.+++..+.+..++++++++.++.++++++.+.+.|+..|+++.
T Consensus 269 ~~~~~GlRiG~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~gi~~~ 348 (428)
T d1iaya_ 269 DMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCL 348 (428)
T ss_dssp TSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred cccCCCcccccccccccchhhhhhhhhcccccccccccchhhhhhhhccccccccccccccchhHHHHHHHHHhCCCEEe
Confidence 58999999999999677888888887777788899999888888888777899999999999999999999998899999
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
+|+||||+|++++..+......++.++++.|++++||.+.||+.|+..+++|+|||++..+++++++++++|++++...|
T Consensus 349 ~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a~~~~~~l~~al~Rl~~~l~~~k 428 (428)
T d1iaya_ 349 KNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALARIRRFVGVEK 428 (428)
T ss_dssp CCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSSCHHHHHHHHHHHHHHHHTTC
T ss_pred cCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHhhcC
Confidence 99999999999998766666667889999999888999999999998778999999987677789999999999997653
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.96 E-value=4.6e-29 Score=191.23 Aligned_cols=158 Identities=43% Similarity=0.872 Sum_probs=138.0
Q ss_pred CCCCCceeEEEEEecCHHH-HHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 1 DLSLPGFRISVIYSYNNSV-LAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~-~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
+||+||+|+||+++ ++++ .+..........++++.|.+++..+.+..+.++++++.++.++++++.+.+.|++.|+++
T Consensus 272 ~~~~~G~RiG~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~ 350 (431)
T d1m7ya_ 272 DLGLPGFRVGAIYS-NDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISC 350 (431)
T ss_dssp SSCCGGGCEEEEEE-SCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cccCCCCccceecc-chhhhHHHHHHHhccccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcCCcEE
Confidence 58999999999999 5555 445555555677888888888888887766688999999999999999999999999999
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHHh
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~ 159 (163)
.+|+||||+|++++..+......++.+++++|++++||.+.||+.|+...++|+||+++..+++++++++++|+++++++
T Consensus 351 ~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a~~~e~~l~~al~rL~~~l~~~ 430 (431)
T d1m7ya_ 351 LNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGEY 430 (431)
T ss_dssp CCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999877666667888999999988899999999999777899999998767788999999999999876
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.95 E-value=3.2e-28 Score=183.90 Aligned_cols=152 Identities=18% Similarity=0.306 Sum_probs=136.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+...... .+++.+.|.++..++.++.+ .++++..++.+.+++..+.+.|...++.
T Consensus 233 ~~~~~GlR~G~ii~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 310 (388)
T d1gdea_ 233 TFAMTGWRLGFVAA-PSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEMGLP 310 (388)
T ss_dssp TTTCGGGCCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hccCccccEEEEEe-eccchhhhhhccccccccccccchhhHHHHHhhccc-hhHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 48999999999999 99999998887764 57888999999999999876 7888999999999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
+..|+||+|+|++++... .++.++++.|++++||.+.||+.|+..+++|+|||++. +++++++++++|.+++++
T Consensus 311 ~~~p~gg~fl~~~l~~~~-----~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~-~~e~l~~al~rL~~~l~e 384 (388)
T d1gdea_ 311 TVKPKGAFYIFPRIRDTG-----LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVLKE 384 (388)
T ss_dssp CCCCCBTTEECCBCGGGT-----CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred ccCCCceEEEEEECCCCC-----CCHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 999999999999998532 27889999999888999999999987678999999997 889999999999999998
Q ss_pred hh
Q 042816 159 CK 160 (163)
Q Consensus 159 ~~ 160 (163)
+|
T Consensus 385 ~k 386 (388)
T d1gdea_ 385 RK 386 (388)
T ss_dssp TT
T ss_pred cC
Confidence 86
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.95 E-value=3.5e-28 Score=184.06 Aligned_cols=147 Identities=19% Similarity=0.359 Sum_probs=132.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI 77 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~ 77 (163)
+||+||+|+||+++ |+++++.+.+.... .+++.+.|.++...+.+. ++++++.++.|+++++.+.+.|+++ |+
T Consensus 238 ~~~~~GlRvG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 313 (388)
T d1j32a_ 238 TYAMTGWRVGFLAG-PVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS---QDCVQEMLAAFAERRRYMLDALNAMPGL 313 (388)
T ss_dssp TTTCTTTCCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred hhhcchhHeEEEEE-CHHHHHHHHHhhhhccccccHHHHHHHhhcccch---HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 58999999999999 99999998887763 578899999988888776 5789999999999999999999998 89
Q ss_pred ccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
++.+|+||||+|++++... .++.+++++|++++||.+.||+.|+. ++++|||++. +++++++++++|.++++
T Consensus 314 ~~~~p~gg~~l~~~l~~~~-----~~~~~~~~~ll~~~gV~v~pG~~F~~--~~~~Rls~~~-~~e~l~~al~rl~~~l~ 385 (388)
T d1j32a_ 314 ECPKPDGAFYMFPSIAKTG-----RSSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYAT-DLDTIKRGMERLEKFLH 385 (388)
T ss_dssp BCCCCCBTTEECCBCGGGT-----CCHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECCS-CHHHHHHHHHHHHHHHH
T ss_pred EecCCCceEEEEEECCCCC-----CCHHHHHHHHHHhCCEEEEeccccCC--CCeEEEEEeC-CHHHHHHHHHHHHHHHH
Confidence 9999999999999998643 36789999999889999999999985 6899999997 99999999999999998
Q ss_pred Hh
Q 042816 158 TC 159 (163)
Q Consensus 158 ~~ 159 (163)
.+
T Consensus 386 ~l 387 (388)
T d1j32a_ 386 GI 387 (388)
T ss_dssp HH
T ss_pred Hh
Confidence 75
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.6e-28 Score=185.48 Aligned_cols=145 Identities=19% Similarity=0.257 Sum_probs=128.5
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+|++||+|+||+++ |+++++.+.+.... ++++.+.|.++..++.++ ++++..+++.|+++++.+.+.++..|++
T Consensus 233 ~~~~pG~RiG~~v~-~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 308 (382)
T d1u08a_ 233 TYHMTGWKVGYCVA-PAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYLALPDFYRQKRDILVNALNESRLE 308 (382)
T ss_dssp HTTCGGGCCEEEEC-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHHTHHHHHHHHHHHHHHHTTSSSCE
T ss_pred cccCCcccchhhhc-cchhHHHHHhhhcccccccccccccccccccccc---hHHHHHHHHHHHhhhhhhhhhhccCCcE
Confidence 37899999999999 99999999888773 689999999999999876 5889999999999999999999888999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC--CCceEEEEEecCChhHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI--EPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~--~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+.+|+||||+|++++... ..++.+|+++|++++||.++||+.|+.. +++|+|||++. ++|++++++++|++
T Consensus 309 ~~~p~gg~~~~~~~~~~~----~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~-~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 309 ILPCEGTYFLLVDYSAVS----TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERLRQ 381 (382)
T ss_dssp ECCCCBSSEEEEECTTTC----CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-CHHHHHHHHHHHTT
T ss_pred EecCCceEEEEEecCCCC----CCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHhC
Confidence 999999999999998531 1378999999998899999999999743 36799999987 89999999999875
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=4.1e-27 Score=179.64 Aligned_cols=151 Identities=19% Similarity=0.314 Sum_probs=130.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL---- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---- 75 (163)
+++||+|+||+++ |+++++.+.+.... .+++.+.|.+++.++.++.+ .++++..++.|+++++.+.+.|++.
T Consensus 256 ~~~~G~RiG~~~~-~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 333 (420)
T d1vp4a_ 256 VLAPGLRIGMVAG-SKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIELYRRKRTVMLNALEEYFSDI 333 (420)
T ss_dssp TTCGGGCEEEEEC-CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred ccccccccccccc-cchhhhhhhhhhhhccccCchhhhhhhhhhcccccc-cccchhHHHHhhhhcccchhhhhhhhccC
Confidence 5679999999999 99999999888774 57889999999888887665 7888899999999999998888764
Q ss_pred -CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCC--CceEEEEEecCChhHHHHHHHHH
Q 042816 76 -GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE--PGWFSFSFTLLTEKDIHVVMERI 152 (163)
Q Consensus 76 -g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~--~~~iRi~~~~~~~~~l~~~~~~l 152 (163)
|+++.+|+||||+|+++|+.. ++.++++.|.+ +||.|.||+.|+..+ ++++|||++..+++++++++++|
T Consensus 334 ~g~~~~~p~gg~f~~~~~~~~~------d~~~~~~~l~~-~gV~v~PG~~F~~~~~~~~~iRls~~~~~~e~l~~a~~rL 406 (420)
T d1vp4a_ 334 PGVKWVKSEGGLFIWLTLPEGF------DTWEMFEYAKR-KKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRL 406 (420)
T ss_dssp TTCEECCCSBSSEEEEECCTTC------CTTTTHHHHHH-HTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHH
T ss_pred CCcEEecCCceEEEEEECCCCC------CHHHHHHHHHH-CCeEEEechhhCCCCCCCCEEEEEeCcCCHHHHHHHHHHH
Confidence 789999999999999999764 66778887665 899999999997543 67999999866889999999999
Q ss_pred HHHHHHhhh
Q 042816 153 RRISQTCKS 161 (163)
Q Consensus 153 ~~~~~~~~~ 161 (163)
.++++++++
T Consensus 407 ~~~l~~~~~ 415 (420)
T d1vp4a_ 407 REVVLEYGK 415 (420)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhH
Confidence 999998765
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.94 E-value=8.3e-27 Score=177.92 Aligned_cols=155 Identities=15% Similarity=0.228 Sum_probs=129.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChH----HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTK----FVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+|++||+|+||+++ ++++++.+.+.... ++++++.|.+++.++.+.. ..++|++++++.|+++++.+.+.|++
T Consensus 245 ~~~~pGlRiG~~~~-~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 323 (418)
T d2r5ea1 245 TFSLTGWKIGWAYG-PEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAE 323 (418)
T ss_dssp HTTCGGGCCEEEES-CHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcccccccc-cchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhh
Confidence 37899999999999 99999999887763 6788899987776664321 11578899999999999999999999
Q ss_pred cCCccccCCceeEEEeecCCccc------CCChhhHHHHHHHHHHhcCeEEcCCCCCCCC-----CCceEEEEEecCChh
Q 042816 75 LGIECAKSNGGFYCWADMSGLIS------SYSEKGELELWDKLLNVAKVNVTPGSSCHCI-----EPGWFSFSFTLLTEK 143 (163)
Q Consensus 75 ~g~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-----~~~~iRi~~~~~~~~ 143 (163)
.|+++.+|+||||+|++++.... .....++.+|++.|++++||.+.||+.|+.. +++|+|||++. +++
T Consensus 324 ~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~-~~e 402 (418)
T d2r5ea1 324 VGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFK-KDE 402 (418)
T ss_dssp TTCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCS-CHH
T ss_pred cCCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEecC-CHH
Confidence 99999999999999999875321 1122478999999999889999999999743 25799999987 889
Q ss_pred HHHHHHHHHHHHHH
Q 042816 144 DIHVVMERIRRISQ 157 (163)
Q Consensus 144 ~l~~~~~~l~~~~~ 157 (163)
++++++++|++++.
T Consensus 403 ~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 403 NLQKAAEILRKWKG 416 (418)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998874
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=1.4e-26 Score=174.72 Aligned_cols=145 Identities=26% Similarity=0.463 Sum_probs=126.4
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ |+++++.+.+.... .+++.+.|.++...+.+....+.+++..++.|+++++.+.+.+.+.|++
T Consensus 235 ~~~~~GlR~G~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 313 (382)
T d1b5pa_ 235 AFAMTGWRIGYACG-PKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLK 313 (382)
T ss_dssp TTTCGGGCCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hccCcHhheEEEEE-CHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcCCe
Confidence 58999999999999 99999998877663 5788888988888887765558889999999999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
+.+|+||||+|+++++.. .++..+.+.|++ +||.|.||+.|+. ++++||+++. ++|++++++++|.++
T Consensus 314 ~~~p~gg~~~~~~~~~~~-----~~~~~~~~~l~e-~gV~v~PG~~F~~--~~~iRis~~~-~~e~l~~al~rl~~~ 381 (382)
T d1b5pa_ 314 AVRPSGAFYVLMDTSPIA-----PDEVRAAERLLE-AGVAVVPGTDFAA--FGHVRLSYAT-SEENLRKALERFARV 381 (382)
T ss_dssp BCCCSBTTEEEEECTTTC-----SSHHHHHHHHHH-TTEECEESGGGTC--TTEEEEECCS-CHHHHHHHHHHGGGG
T ss_pred EecCCceEEEeEeCCCCC-----CCHHHHHHHHHH-CCEEEEeCcccCC--CCeEEEEEcC-CHHHHHHHHHHHHHh
Confidence 999999999999996532 267788887776 8999999999985 6899999997 899999999999875
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.94 E-value=1.3e-26 Score=175.74 Aligned_cols=150 Identities=21% Similarity=0.277 Sum_probs=124.2
Q ss_pred CCCCCceeEEEEEecC-HH----HHHHHHHhhc-ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 1 DLSLPGFRISVIYSYN-NS----VLAAAKKLAR-FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~-~~----~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+|++||+|+||+++++ .. +.+....... .++++.+.|.++..++.++ ++|+++.++.|+++++.+.+.|++
T Consensus 238 ~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~ 314 (395)
T d1xi9a_ 238 VYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP---MDYLKEYMKKLKERRDYIYKRLNE 314 (395)
T ss_dssp TTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999988733 22 2232222222 3678999999998888876 578999999999999999999999
Q ss_pred c-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHH
Q 042816 75 L-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153 (163)
Q Consensus 75 ~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~ 153 (163)
+ ++.+.+|+||||+|++++... ..++.+++.+|++++||.+.||+.|+..+++|+|||++. +.+++++++++|.
T Consensus 315 ~~~~~~~~p~gg~~~~~~l~~~~----~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~-~~e~l~eal~rl~ 389 (395)
T d1xi9a_ 315 IPGISTTKPQGAFYIFPKIEVGP----WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAMDRFE 389 (395)
T ss_dssp STTEECCCCCBSSEECCEECSCS----CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHH
T ss_pred CCCceecCCCeeEEEeEECCCCC----CCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEecC-CHHHHHHHHHHHH
Confidence 8 578899999999999997531 126788999999889999999999987668999999987 8999999999999
Q ss_pred HHHHH
Q 042816 154 RISQT 158 (163)
Q Consensus 154 ~~~~~ 158 (163)
+++++
T Consensus 390 ~~l~e 394 (395)
T d1xi9a_ 390 KFMKE 394 (395)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.93 E-value=1.2e-26 Score=175.75 Aligned_cols=151 Identities=12% Similarity=0.097 Sum_probs=123.4
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhccc--CCChHHHHHHH-HhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLV-SMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-- 75 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 75 (163)
+||+||+|+||++++++.+.+.+....... +++...|.+++ ...... +++.++.++.++++++.+.+.++..
T Consensus 239 ~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (394)
T d1c7na_ 239 TFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC---GKWLDGCIKVIDKNQRIVKDFFEVNHP 315 (394)
T ss_dssp HHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccccccccccccccChhhhhhhhhhhhhccccccccccchhhhhhhcch---hhhhcccccccchhhhhhhhhhhcccc
Confidence 378999999999997778888888776642 23333333333 322222 6888999999999999999999876
Q ss_pred CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
++++..|+||||+|++++... .++.+++++|++++||.+.||+.|+..+++|+|||++. +++++++++++|.++
T Consensus 316 ~~~~~~p~g~~~~~~~~~~~~-----~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~-~~e~i~eal~rl~~~ 389 (394)
T d1c7na_ 316 EIKAPLIEGTYLQWIDFRALK-----MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKA 389 (394)
T ss_dssp TSBCCCCSBSSEEEEECGGGC-----CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHH
T ss_pred ceeecCCCceeEEEEECCCCC-----CCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEeC-CHHHHHHHHHHHHHH
Confidence 688899999999999998631 27899999999878999999999987678999999987 889999999999999
Q ss_pred HHHhh
Q 042816 156 SQTCK 160 (163)
Q Consensus 156 ~~~~~ 160 (163)
++++|
T Consensus 390 l~~Lk 394 (394)
T d1c7na_ 390 LKDLK 394 (394)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 99875
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3e-26 Score=174.79 Aligned_cols=154 Identities=12% Similarity=0.228 Sum_probs=129.6
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHH----HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKF----VQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
|++||+|+||+++ ++++++.+.+.... .+++++.|.++..++.+... ..+++..+++.|+++++.+.+.|++.
T Consensus 246 ~~~pG~RvG~~v~-~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 324 (418)
T d1w7la_ 246 FSATGWKVGWVLG-PDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV 324 (418)
T ss_dssp TTCGGGCCEEEEC-CHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCccccccc-chhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhc
Confidence 7899999999999 99999999888874 67899999988888765421 14678899999999999999999999
Q ss_pred CCccccCCceeEEEeecCCccc-------CCChhhHHHHHHHHHHhcCeEEcCCCCCCC-----CCCceEEEEEecCChh
Q 042816 76 GIECAKSNGGFYCWADMSGLIS-------SYSEKGELELWDKLLNVAKVNVTPGSSCHC-----IEPGWFSFSFTLLTEK 143 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-----~~~~~iRi~~~~~~~~ 143 (163)
|+++.+|+||||+|+++++... ..+..++.+++++|++++||.|.||+.|+. ..++|+|||++. +++
T Consensus 325 g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~-~~~ 403 (418)
T d1w7la_ 325 GLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DEA 403 (418)
T ss_dssp TCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC-CHH
T ss_pred CCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEcC-CHH
Confidence 9999999999999999975321 111236789999999999999999999973 236899999987 889
Q ss_pred HHHHHHHHHHHHHH
Q 042816 144 DIHVVMERIRRISQ 157 (163)
Q Consensus 144 ~l~~~~~~l~~~~~ 157 (163)
++++++++|+++..
T Consensus 404 ~l~~a~~rl~~~~~ 417 (418)
T d1w7la_ 404 TLQAMDEKLRKWKV 417 (418)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988653
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.93 E-value=7.4e-26 Score=172.20 Aligned_cols=154 Identities=21% Similarity=0.321 Sum_probs=122.7
Q ss_pred CCCCCceeEEEEEecC-----HHHHHHHHHhhcc-cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 1 DLSLPGFRISVIYSYN-----NSVLAAAKKLARF-SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~-----~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+|++||+|+||+++++ +.++....+.... .+++.+.|..+...+.+.. ++++++.++.|+++++.+.+.|.+
T Consensus 251 ~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~r~~~~~~l~~ 328 (412)
T d1bw0a_ 251 NLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP--QEHLDQIVAKIEESAMYLYNHIGE 328 (412)
T ss_dssp TTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCccCCCCcccccccchhhcchhhhhhhccccccccCCchhhhhhccccccccc--ccccccccchhHHHHHHHHHHHHH
Confidence 4899999999999942 3444544444443 4566666665555543322 688999999999999999999988
Q ss_pred c-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHH
Q 042816 75 L-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153 (163)
Q Consensus 75 ~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~ 153 (163)
. |+++.+|+||||+|++++.... .+..++.+|+++|++++||.+.||+.|+. ++|+|||++. +++++++++++|+
T Consensus 329 ~~g~~~~~p~gg~~l~~~~~~~~~-~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~--~g~iRis~~~-~~e~l~eal~Rl~ 404 (412)
T d1bw0a_ 329 CIGLAPTMPRGAMYLMSRIDLEKY-RDIKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTTTR-PVEVYREAVERIK 404 (412)
T ss_dssp STTEEECCCCBTTEEEEEECGGGB-SSCCSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCS-CHHHHHHHHHHHH
T ss_pred hcCceecCCCCceEEEEeCChhhc-CCCCCHHHHHHHHHHhCCEEEEeccccCC--CCeEEEEEcC-CHHHHHHHHHHHH
Confidence 7 9999999999999999874321 11237889999999888999999999985 7899999987 8999999999999
Q ss_pred HHHHHhh
Q 042816 154 RISQTCK 160 (163)
Q Consensus 154 ~~~~~~~ 160 (163)
++++++.
T Consensus 405 ~~l~~~~ 411 (412)
T d1bw0a_ 405 AFCQRHA 411 (412)
T ss_dssp HHHHHHB
T ss_pred HHHHhcC
Confidence 9998874
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=6.7e-25 Score=164.92 Aligned_cols=139 Identities=22% Similarity=0.417 Sum_probs=120.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+||+||+|+||+++ ++++++.+...... ...+.+.|......+.+. ....++.++++++.+.+.|++.|++
T Consensus 234 ~~~l~G~R~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~l~~~g~~ 306 (375)
T d1o4sa_ 234 SHSMTGWRVGYLIS-SEKVATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERKNFVVERLKKMGVK 306 (375)
T ss_dssp TTTCGGGCCEEEEC-CHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hccCCccccccccc-cccchhhhhhhhccccccccccchhhhhhhcccc------hhhhHHHHHHHHHHHHHHHHhcCce
Confidence 58999999999999 99999998888774 456777777777766654 3456778999999999999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~ 157 (163)
+.+|+||||+|++++. ++.+++.+|++++||.|.||+.|+. ++|+||+++. +++++++++++|+++++
T Consensus 307 ~~~p~gg~f~~~~~~~--------~~~~~~~~ll~~~gV~v~pG~~F~~--~g~iRis~~~-~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 307 FVEPEGAFYLFFKVRG--------DDVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFAT-SIERLTEALDRIEDFLN 374 (375)
T ss_dssp CCCCSBSSEEEEECSS--------CHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCS-CHHHHHHHHHHHHHHHT
T ss_pred EecCCccEEEEEECCC--------CHHHHHHHHHHhCCEEEEEccccCC--CCeEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence 9999999999999986 5788888888878999999999985 7899999997 99999999999999875
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=2.5e-24 Score=162.50 Aligned_cols=148 Identities=18% Similarity=0.173 Sum_probs=124.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc-ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR-FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG-IE 78 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~ 78 (163)
+|++||+|+||++++++.+.+....... ..+++.+.|.++..++... +++++++++.++++++.+.+.|+++| ..
T Consensus 230 ~~~~~GlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 306 (389)
T d2gb3a1 230 KFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD---DSFFDFVRETYRERVETVLKKLEEHGLKR 306 (389)
T ss_dssp TTTCGGGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cccCcccceeeeeccchhHHHHHhhhhhcccccccccccccccccccc---chhcccccccccccchhhhhhhhhhcccc
Confidence 4899999999999966666666655554 4677888888888888766 68899999999999999999999995 56
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHh-----cCeEEcCCCCCCCC---CCceEEEEEecCChhHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNV-----AKVNVTPGSSCHCI---EPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~gi~v~pg~~f~~~---~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
+..|+||||+|+++|.. ++.+++++|+++ .||.+.||+.|+.. +++|+|||++. ++++++++++
T Consensus 307 ~~~p~~g~~~~~~lp~~-------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~-~~~~l~~a~~ 378 (389)
T d2gb3a1 307 FTKPSGAFYITAELPVE-------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVL-EKDLLSRAID 378 (389)
T ss_dssp BCCCSBSSEEEEECSSS-------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCS-CHHHHHHHHH
T ss_pred ccCCCceEEEEEeCCCC-------CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEcC-CHHHHHHHHH
Confidence 78899999999999863 778999998864 47899999988742 36899999986 9999999999
Q ss_pred HHHHHHHHh
Q 042816 151 RIRRISQTC 159 (163)
Q Consensus 151 ~l~~~~~~~ 159 (163)
+|.+++++.
T Consensus 379 ~L~~~lk~f 387 (389)
T d2gb3a1 379 VLMEGLKMF 387 (389)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999875
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.92 E-value=8.2e-25 Score=165.82 Aligned_cols=149 Identities=15% Similarity=0.238 Sum_probs=129.5
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL---GIE 78 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---g~~ 78 (163)
+||+|+||+++ |+++++.+...... .+++.+.|.+.+.++..... +.++++.++.++++++.+.+.|.+. |+.
T Consensus 246 ~~G~RiG~~i~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 323 (403)
T d1wsta1 246 APGFRIGWVAA-HPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYL-DEHIPKIIEFYKPRRDAMLEALEEYMPEGVE 323 (403)
T ss_dssp CGGGCCEEEEE-CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCE
T ss_pred cCccccccccc-chHHHHHHHHHHhhhccccccchhhhHHhhhhcccc-chhHHHHHHHHHHHHHHHHHHHHhhccCCeE
Confidence 49999999999 99999998887764 57888889888888877665 8899999999999999999999886 689
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC--CCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI--EPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~--~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
+..|+||+|+|+++|+.+ ++..+++.|++ +||.|.||+.|+.. .++++||+++..+++++++++++|.+++
T Consensus 324 ~~~p~gg~~~~~~~~~~~------~~~~~~~~l~~-~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l 396 (403)
T d1wsta1 324 WTKPEGGMFVRVTLPEGI------DTKLMMERAVA-KGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETI 396 (403)
T ss_dssp ECCCSBSSEEEEECCTTC------CTTTTHHHHHH-TTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred EeCCCceeEEEEECCCCC------CHHHHHHHHHH-CCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 999999999999999865 66778887776 89999999999743 3789999998668899999999999999
Q ss_pred HHhhh
Q 042816 157 QTCKS 161 (163)
Q Consensus 157 ~~~~~ 161 (163)
++..+
T Consensus 397 ~~~~k 401 (403)
T d1wsta1 397 KEEMK 401 (403)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87654
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=1.1e-24 Score=163.29 Aligned_cols=141 Identities=24% Similarity=0.432 Sum_probs=123.0
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIEC 79 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 79 (163)
+++||+|+||+++ ++++++.+.+.... .+++.+.|.++..++....+ .+++++.++.|+++++++.+.|+++|+++
T Consensus 224 ~~~~G~R~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 301 (368)
T d1v2da_ 224 LEATGYRVGWIVG-PKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAMGLRV 301 (368)
T ss_dssp TTCGGGCCEEEEC-CTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred ccccccccccccc-cccccchhhhhhhccccccccccccccccccccccc-hhhHHHHHHHHHHhhhhhhhhHHhcCcEE
Confidence 7899999999999 88999998888773 68899999999999987765 67899999999999999999999999999
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC--CCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI--EPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~--~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
.+|+||+|+|+++|.. +..+ |++++||.++||+.|+.. +++++|||++. +++++++++++|.+++
T Consensus 302 ~~p~g~~~~~~~l~~~-------~~~~----ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~-~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 302 YVPEGTYFLMAELPGW-------DAFR----LVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVV 368 (368)
T ss_dssp ECCSBSSEEEEECTTC-------CHHH----HHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHHC
T ss_pred ecCCceeEEEEeCCcc-------HHHH----HHHhCCEEEEechhhCCCCCCCCEEEEEecC-CHHHHHHHHHHHHHhC
Confidence 9999999999999853 3332 455699999999999743 47899999987 8899999999998864
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=4.7e-24 Score=159.51 Aligned_cols=150 Identities=13% Similarity=0.147 Sum_probs=117.7
Q ss_pred CCCCceeEEEEEecCHHHHHHHH-Hhhccc---CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAK-KLARFS---SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-- 75 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~-~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-- 75 (163)
|++||+|+||++++++....... ...... +++...|.++...+... +.+.++.++.+++|++.+.+.+.+.
T Consensus 206 ~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~r~~~~~~~~~~~~~ 282 (361)
T d1d2fa_ 206 FNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG---APWLDALRIYLKDNLTYIADKMNAAFP 282 (361)
T ss_dssp HTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cccccccceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhcc---chhhhcccccchhhHHHHHHHhhhhcc
Confidence 68999999999885555544433 333322 33444444443344333 6788899999999999999888776
Q ss_pred CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHH
Q 042816 76 GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 155 (163)
Q Consensus 76 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~ 155 (163)
++.+.+|+||||+|++++... .++.++++.|++++||.|.||+.|+..+++|+|||++. +++++++++++|.++
T Consensus 283 ~~~~~~p~gg~~~~~~l~~~~-----~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~~-~~e~l~~al~rl~~~ 356 (361)
T d1d2fa_ 283 ELNWQIPQSTYLAWLDLRPLN-----IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINA 356 (361)
T ss_dssp SCCCCCCSBCSEEEEECGGGC-----CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHH
T ss_pred cccccccCceeEEEEEccCCC-----CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEcC-CHHHHHHHHHHHHHH
Confidence 789999999999999986421 27899999999878999999999987678899999986 889999999999999
Q ss_pred HHHhh
Q 042816 156 SQTCK 160 (163)
Q Consensus 156 ~~~~~ 160 (163)
+++++
T Consensus 357 l~~lr 361 (361)
T d1d2fa_ 357 IRAVR 361 (361)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 99875
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.90 E-value=3.5e-23 Score=154.50 Aligned_cols=140 Identities=14% Similarity=0.230 Sum_probs=117.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
.||+||+|+||++++++.+.+.+.+....++.+.++|.++..++++. +++...++.++++++++.+.|.+. |+++
T Consensus 215 ~~~l~GlR~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (355)
T d1lc5a_ 215 FYAIPGLRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEVALQDS----AWQQATWHWLREEGARFYQALCQLPLLTV 290 (355)
T ss_dssp TTTCTTTCCEEEECCCHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCH----HHHHHHHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred ccccccccccceeccchhhhHHHHhhcCCcccccccccccccccccc----chhHHHHHHHHHHHHHHHHHHhhcCCcEE
Confidence 47999999999999445566777766667889999999999999985 567788889999999999999998 7776
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~~~ 156 (163)
. |.+|+|+|++++. ++.++++.|++ +||.|+||+.|+..+++|+||+++ ++++++.+++.|++++
T Consensus 291 ~-p~~~~f~~~~~~~--------~~~~~~~~L~~-~gv~vr~~~~f~~~~~~~iRis~~--~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 291 Y-PGRANYLLLRCER--------EDIDLQRRLLT-QRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNVL 355 (355)
T ss_dssp C-CCSSSEEEEEESC--------TTCCHHHHHHT-TTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred C-CCCCEEEEEECCC--------CHHHHHHHHHH-CCcEEEeCccCCCCCCCEEEEEeC--CHHHHHHHHHHHHHhC
Confidence 5 6788999999985 56788888876 899999999998766899999997 6688888888887753
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.1e-22 Score=151.73 Aligned_cols=137 Identities=15% Similarity=0.220 Sum_probs=114.0
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC 79 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 79 (163)
.||+||+|+||+++ ++++++.+.+....+++|.+.|.++..++.+..+ .+.....+.+.++++.+.+.+.++ ++..
T Consensus 213 ~~~laGlRiGy~i~-~~~~i~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~ 289 (354)
T d1fg7a_ 213 AFALAGLRCGFTLA-NEEVINLLMKVIAPYPLSTPVADIAAQALSPQGI--VAMRERVAQIIAEREYLIAALKEIPCVEQ 289 (354)
T ss_dssp TTCCGGGCCEEEEE-CHHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHH--HHHHHHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred ccCCCccccccccc-cchhhhhhhhhcCccchhhHHHHHHHHHHhhhcc--ccccccchhhhhHHHHHHHHHHhCCCcce
Confidence 48999999999999 9999999999988889999999988888877643 555666777888889999999998 4556
Q ss_pred ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHH
Q 042816 80 AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 153 (163)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~ 153 (163)
..|.+++|+|++++ ++.++++.|++ +||.|+|++.|.. .++|+|||++ ++++++.+++.|+
T Consensus 290 ~~p~~~~f~~~~~~---------~~~~~~~~L~~-~gIlvr~~~~~~~-~~~~lRisig--t~ee~~~~l~aLk 350 (354)
T d1fg7a_ 290 VFDSETNYILARFK---------ASSAVFKSLWD-QGIILRDQNKQPS-LSGCLRITVG--TREESQRVIDALR 350 (354)
T ss_dssp ECCCSSSEEEEEET---------THHHHHHHHHH-TTEECEECTTSTT-CTTEEEEECC--CHHHHHHHHHHHH
T ss_pred eCCCCceEEEEeCC---------CHHHHHHHHHH-CCcEEecCCCCCC-CCCEEEEEeC--CHHHHHHHHHHHh
Confidence 67889999999997 46788888876 8999999988763 3689999997 5677777776665
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=4.8e-22 Score=147.34 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=113.4
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
+|++||+|+||+++ |+++++.+......+++|.+.|.++..++.+. ++.++.++.|+++++.+.+.|+++|+++.
T Consensus 203 ~~~~~G~R~G~~~~-~~~~i~~l~~~~~~~~~s~~~~~~a~~~l~~~----~~~~~~~~~~~~~r~~l~~~L~~~g~~~~ 277 (334)
T d2f8ja1 203 AFSLAAQRVGYVVA-SEKFIDAYNRVRLPFNVSYVSQMFAKVALDHR----EIFEERTKFIVEERERMKSALREMGYRIT 277 (334)
T ss_dssp TSSCTTTCEEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHHHHHHHHHHTCEEC
T ss_pred ccchhhhhhhhccc-chHHHHHHHHhhcccccchhhhhhcccccccc----cchhhHHHHHHHHHHHHHHHHHHCCCeEC
Confidence 48999999999999 99999999999888899999999999998874 66788899999999999999999999999
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 154 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~~l~~ 154 (163)
+|+|+ |+|+.++. .++.++++.|++ +||.|+++ ++|+|||++ +.++++++++.|++
T Consensus 278 ~~~g~-f~~~~~~~-------~~~~~~~~~L~~-~GI~vr~~-------~~~vRis~g--~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 278 DSRGN-FVFVFMEK-------EEKERLLEHLRT-KNVAVRSF-------REGVRITIG--KREENDMILRELEV 333 (334)
T ss_dssp CCCSS-EEEEECCH-------HHHHHHHHHHHH-TTEECEEE-------TTEEEEECC--CHHHHHHHHHHHHH
T ss_pred CCCce-EEEEECCC-------CCHHHHHHHHHH-CCCEECCC-------CCeEEEEcC--CHHHHHHHHHHHhc
Confidence 88877 68988886 377889998876 89999753 579999998 56777877777764
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.87 E-value=3e-22 Score=152.66 Aligned_cols=148 Identities=14% Similarity=0.173 Sum_probs=115.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChH--------HHHHHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTK--------FVQKFININRERLRRLYVKFVA 70 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~l~~ 70 (163)
+||+||+|+||++++|+.+++.+.++... +++|.+.|.++..+|++.. ...++.+..++.++++++.+.+
T Consensus 252 ~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~ 331 (425)
T d2hoxa1 252 FTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITA 331 (425)
T ss_dssp HTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred hccCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999888688898999888773 6899999999988886531 0135678889999999999999
Q ss_pred HhhhcC-Ccc--------------ccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEE
Q 042816 71 GLRQLG-IEC--------------AKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSF 135 (163)
Q Consensus 71 ~l~~~g-~~~--------------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi 135 (163)
.|++.+ +.. ..+..+.|+|++++. ++.+++..+++++||.++||+.|+. +++|+||
T Consensus 332 ~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~--------~~~~~~~~lL~e~gI~v~pGs~FG~-~~~yvRi 402 (425)
T d2hoxa1 332 LLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW--------EEDKDCYQTFQNGRINTQNGVGFEA-SSRYVRL 402 (425)
T ss_dssp HHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS--------GGGCSHHHHHHHTTEECEEGGGGTS-CTTEEEE
T ss_pred HHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCC--------ChHHHHHHHHHhCCEEEEechhcCC-CCCEEEE
Confidence 998874 221 223444567888764 3344455566679999999999974 4789999
Q ss_pred EEecCChhHHHHHHHHHHHHHHH
Q 042816 136 SFTLLTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 136 ~~~~~~~~~l~~~~~~l~~~~~~ 158 (163)
|+.. ++|++++++++|++++++
T Consensus 403 sl~~-~~e~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 403 SLIK-TQDDFDQLMYYLKDMVKA 424 (425)
T ss_dssp ECSS-CHHHHHHHHHHHHHHHTC
T ss_pred EecC-CHHHHHHHHHHHHHHHhc
Confidence 9998 889999999999998864
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.81 E-value=3.7e-20 Score=140.62 Aligned_cols=137 Identities=15% Similarity=0.219 Sum_probs=108.6
Q ss_pred CCCCCceeEEEEEecCHHH-------HHH----HHHhhc--ccCCChHHHHHHHHhcCChHH---HHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYNNSV-------LAA----AKKLAR--FSSVSAPSQNLLVSMLSDTKF---VQKFININRERLRRL 64 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~-------~~~----~~~~~~--~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~ 64 (163)
+|++||+|+||+++ ++++ .+. ...... ..+++.+.|.++..++.++.+ ..++++.+++.|+++
T Consensus 255 ~~~~~G~RiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (412)
T d1yaaa_ 255 NAGMYGERVGCFHL-ALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKM 333 (412)
T ss_dssp TSCCGGGCEEEEEE-ECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcCceEEEEE-chhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999 4322 121 112222 367899999999999998743 256788999999999
Q ss_pred HHHHHHHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecC
Q 042816 65 YVKFVAGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLL 140 (163)
Q Consensus 65 ~~~l~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~ 140 (163)
++.+.+.|+++| +++.+|+||||+|+.++ .+++++|++++||++.||. |||++.+
T Consensus 334 r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls-----------~e~~~~L~~e~~V~~~~g~----------Ris~~g~ 392 (412)
T d1yaaa_ 334 RHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT-----------PQMVKRLEETHAVYLVASG----------RASIAGL 392 (412)
T ss_dssp HHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEECCTTS----------EEEGGGC
T ss_pred HHHHHHHHHHhCCCCCCceeCCCceEEEecCcC-----------HHHHHHHHHhCCEEECCCC----------EEEeccC
Confidence 999999999984 67789999999997664 4568888888999999873 9999877
Q ss_pred ChhHHHHHHHHHHHHHHHh
Q 042816 141 TEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 141 ~~~~l~~~~~~l~~~~~~~ 159 (163)
+.++++...++|.++++.+
T Consensus 393 ~~~~i~~l~~ai~~v~k~~ 411 (412)
T d1yaaa_ 393 NQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp CTTTHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 8889998888888887654
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.79 E-value=1.7e-19 Score=136.37 Aligned_cols=134 Identities=13% Similarity=0.221 Sum_probs=107.8
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc---------ccCCChHHHHHHHHhcCChHH---HHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR---------FSSVSAPSQNLLVSMLSDTKF---VQKFININRERLRRLYVKF 68 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~---------~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l 68 (163)
+|+++|+|+||+++ +.++++...+... ..+++.+.|.+++.++.++.+ ...+++..++.|+++++.+
T Consensus 251 ~~~~~G~RiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l 329 (401)
T d7aata_ 251 NMGLYGERAGAFTV-ICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQL 329 (401)
T ss_dssp TSCCGGGCEEEEEE-ECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeccccceeec-chHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999 5555444433221 257888999999999998753 2567788999999999999
Q ss_pred HHHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhH
Q 042816 69 VAGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKD 144 (163)
Q Consensus 69 ~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~ 144 (163)
.+.|++++ +.+.+|+||||+|+.++ .+++++|++++||.+.|| +|||++.+++++
T Consensus 330 ~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-----------~e~~~~L~~e~gV~~~pg----------~Ris~a~~~~~~ 388 (401)
T d7aata_ 330 VSNLKKEGSSHNWQHITDQIGMFCFTGLK-----------PEQVERLTKEFSIYMTKD----------GRISVAGVASSN 388 (401)
T ss_dssp HHHHHHTTCCSCCHHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEECCTT----------CEEEGGGCCTTT
T ss_pred HHHHHHhCCCCCcceECCCCeEEEecCCC-----------HHHHHHHHHhCCEEECCC----------cEEEeccCCHHH
Confidence 99999984 56778999999998664 456788888899999997 399998778899
Q ss_pred HHHHHHHHHHHH
Q 042816 145 IHVVMERIRRIS 156 (163)
Q Consensus 145 l~~~~~~l~~~~ 156 (163)
++...++|.+++
T Consensus 389 i~~la~ai~~v~ 400 (401)
T d7aata_ 389 VGYLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 988888888775
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.76 E-value=1.4e-18 Score=131.74 Aligned_cols=138 Identities=15% Similarity=0.230 Sum_probs=108.9
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHh-------hc--ccCCChHHHHHHHHhcCChHH---HHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKL-------AR--FSSVSAPSQNLLVSMLSDTKF---VQKFININRERLRRLYVKF 68 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~-------~~--~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l 68 (163)
+|+++|+|+||+++ +...++.+.+. .. ..+++.+.|.++..++.+..+ .+++++.+++.|+++++.+
T Consensus 259 ~~~~~G~R~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l 337 (412)
T d1ajsa_ 259 NFGLYNERVGNLTV-VAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSEL 337 (412)
T ss_dssp TSCCGGGCEEEEEE-ECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCcccccc-chhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999 43333222221 11 356888999999999887542 2567888999999999999
Q ss_pred HHHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhH
Q 042816 69 VAGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKD 144 (163)
Q Consensus 69 ~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~ 144 (163)
.+.|++++ +.+..+++|||+|+.+. .+++++|++++||++.||. |||++..++++
T Consensus 338 ~~~L~~~~~~~~~~~i~~~~G~F~~~~ls-----------~~~v~~L~~e~gV~~vpg~----------Ri~~ag~~~~~ 396 (412)
T d1ajsa_ 338 RARLEALKTPGTWNHITDQIGMFSFTGLN-----------PKQVEYLINQKHIYLLPSG----------RINMCGLTTKN 396 (412)
T ss_dssp HHHHHHTTCSSCCHHHHHCCSSEEECCCC-----------HHHHHHHHHTTCEECCTTS----------EEEGGGCCTTT
T ss_pred HHHHHHhCCCCCeeeecCCCeEEEecCCC-----------HHHHHHHHHhCCEEEeCCC----------eEEeccCCHHH
Confidence 99999984 55678899999997653 3556778888999999974 99998778899
Q ss_pred HHHHHHHHHHHHHHhh
Q 042816 145 IHVVMERIRRISQTCK 160 (163)
Q Consensus 145 l~~~~~~l~~~~~~~~ 160 (163)
++.+.++|.+++++++
T Consensus 397 i~~~a~aI~~av~~~~ 412 (412)
T d1ajsa_ 397 LDYVATSIHEAVTKIQ 412 (412)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998764
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=7.4e-19 Score=132.64 Aligned_cols=133 Identities=15% Similarity=0.224 Sum_probs=105.2
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc---------ccCCChHHHHHHHHhcCChHH---HHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR---------FSSVSAPSQNLLVSMLSDTKF---VQKFININRERLRRLYVKF 68 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~---------~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l 68 (163)
+|++||+|+||+++ ++..++.+..... ..+++.+.|.++..++.++.. .+++++.+++.|+++++.+
T Consensus 247 ~~~~~G~R~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l 325 (396)
T d2q7wa1 247 NFGLYNERVGACTL-VAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLF 325 (396)
T ss_dssp TTTCGGGCCEEEEE-ECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHH
T ss_pred cccccCCCcccccc-chhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999 5544444433221 356788889999999988632 2678899999999999999
Q ss_pred HHHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhH
Q 042816 69 VAGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKD 144 (163)
Q Consensus 69 ~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~ 144 (163)
.+.|+++| +.+..+++|+|+|+.++ .+++++|++++||++.||. |||++.+++++
T Consensus 326 ~~~L~~~~~~~~~~~~~~~~G~F~~~~l~-----------~e~~~~L~~e~gV~~~~g~----------Ri~~a~l~~~~ 384 (396)
T d2q7wa1 326 VNTLQEKGANRDFSFIIKQNGMFSFSGLT-----------KEQVLRLREEFGVYAVASG----------RVNVAGMTPDN 384 (396)
T ss_dssp HHHHHHTTCCSCCTHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEECCTTC----------EEEGGGCCTTT
T ss_pred HHHHHHhCCCCCcceecCCCeEEEeeCCC-----------HHHHHHHHHhCCEEECCCC----------EEEecCCCHHH
Confidence 99999985 56678899999998765 3567888888999999874 99998878889
Q ss_pred HHHHHHHHHHH
Q 042816 145 IHVVMERIRRI 155 (163)
Q Consensus 145 l~~~~~~l~~~ 155 (163)
++...++|.++
T Consensus 385 i~~~~~ai~~v 395 (396)
T d2q7wa1 385 MAPLCEAIVAV 395 (396)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888765
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.70 E-value=3.3e-17 Score=123.31 Aligned_cols=133 Identities=12% Similarity=0.166 Sum_probs=103.7
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhc---------ccCCChHHHHHHHHhcCChHH---HHHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLAR---------FSSVSAPSQNLLVSMLSDTKF---VQKFININRERLRRLYVKF 68 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~---------~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l 68 (163)
.|+++|+|+||+++ +...++...+... ..+++...|.++..++.++.+ .+++++.+++.|+++++.+
T Consensus 244 ~~~~~G~R~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l 322 (394)
T d2ay1a_ 244 NFGIYRERTGCLLA-LCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQL 322 (394)
T ss_dssp TTTCGGGCEEEEEE-ECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcccccchhh-chhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999 5444333322221 246778889888888887642 2677888999999999999
Q ss_pred HHHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhH
Q 042816 69 VAGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKD 144 (163)
Q Consensus 69 ~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~ 144 (163)
.+.|+++| +.+..|+||||+|+.++ .+++++|++++||++.||. |||++.+++++
T Consensus 323 ~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-----------~~~~~~L~~~~~V~~~~g~----------Ri~~a~l~~~~ 381 (394)
T d2ay1a_ 323 AGELRDLSGSDRFGFVAEHRGMFSRLGAT-----------PEQVKRIKEEFGIYMVGDS----------RINIAGLNDNT 381 (394)
T ss_dssp HHHHHHHHTSSTTTHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEECCTTC----------EEEGGGCCTTT
T ss_pred HHHHHHhCCCCceeeECCCceeEEecCcC-----------HHHHHHHHHhCCEEecCCC----------EEEecCCCHHH
Confidence 99999872 67788999999998765 4567788888999999973 99998888889
Q ss_pred HHHHHHHHHHH
Q 042816 145 IHVVMERIRRI 155 (163)
Q Consensus 145 l~~~~~~l~~~ 155 (163)
++...+.|.++
T Consensus 382 i~~l~~ai~~v 392 (394)
T d2ay1a_ 382 IPILARAIIEV 392 (394)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88777777654
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=1.4e-18 Score=131.18 Aligned_cols=133 Identities=17% Similarity=0.179 Sum_probs=102.6
Q ss_pred CCCCCceeEEEEEecCHHHHHHHH-------Hhhc--ccCCChHHHHHHHHhcCChHHH---HHHHHHHHHHHHHHHHHH
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAK-------KLAR--FSSVSAPSQNLLVSMLSDTKFV---QKFININRERLRRLYVKF 68 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~-------~~~~--~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~l 68 (163)
+|++||+|+||+++ +...++... .... ..+++.+.|.++..++.++.+. .++++..++.++++++.+
T Consensus 248 ~~~~~G~RiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l 326 (397)
T d3tata_ 248 IFSLYGERVGGLSV-MCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQEL 326 (397)
T ss_dssp HHTBTTTCCBCCEE-ECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCcccccccc-chhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999 433322222 2222 2567889999999999886432 466777888999999999
Q ss_pred HHHhhhcC----CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhH
Q 042816 69 VAGLRQLG----IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKD 144 (163)
Q Consensus 69 ~~~l~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~ 144 (163)
.+.|...+ +.+.++++|||+|+.++ .+++++|++++||++.||. |||++.+++++
T Consensus 327 ~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-----------~e~~~~L~~e~~V~l~~g~----------Ri~~a~~~~~~ 385 (397)
T d3tata_ 327 VKVLSTEMPERNFDYLLNQRGMFSYTGLS-----------AAQVDRLREEFGVYLIASG----------RMCVAGLNTAN 385 (397)
T ss_dssp HHTTTTTCTTSCTTHHHHCCSSBCCCCCC-----------HHHHHHHTTTTCEECCSSS----------CCBTTSCCTTT
T ss_pred HHHHHHhCCCCceEEEcCCCceEEecCcC-----------HHHHHHHHHhCCEEeCCCC----------EEEeccCCHHH
Confidence 99998872 77889999999998765 3467888888999999973 99998778889
Q ss_pred HHHHHHHHHHH
Q 042816 145 IHVVMERIRRI 155 (163)
Q Consensus 145 l~~~~~~l~~~ 155 (163)
++.+.++|.++
T Consensus 386 i~~~~~ai~~v 396 (397)
T d3tata_ 386 VQRVAKAFAAV 396 (397)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888765
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.40 E-value=5.8e-13 Score=99.13 Aligned_cols=136 Identities=10% Similarity=-0.035 Sum_probs=88.1
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 042816 1 DLSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDT--KFVQKFININRERLRRLYVKFVAGLRQL- 75 (163)
Q Consensus 1 ~~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 75 (163)
+.+++|+|+||+++ ++++++.+...... ++++++.|.++...|+.- ..++++.+..++......+.+.......
T Consensus 199 sK~~~g~~~G~i~~-~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 277 (366)
T d2aeua1 199 DKLMEGPRGGLLAG-KKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAID 277 (366)
T ss_dssp TSSSSSCSCEEEEE-EHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTC
T ss_pred cccccccceeEEEe-cHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 35688999999999 99999999888764 567888898877776531 1112222222222222222333333222
Q ss_pred C--CccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec
Q 042816 76 G--IECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL 139 (163)
Q Consensus 76 g--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~ 139 (163)
+ .....+.+++++|........ .+..++.+++..|++++||.+.||..|. .+++++|||++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~Ll~~~gV~~ip~~~~p-~~~~~lRis~~~ 341 (366)
T d2aeua1 278 DNINIVYERTPTGFVIKRVYKDDT-INIKKLIEIGFNLLKNYGIITITVAGMP-GASKSLRIDLTS 341 (366)
T ss_dssp TTEEEEEEECSSEEEEEEEESSHH-HHHHHHHHHHHHHHHHHCEECSTTSSSC-SSCCSEEEETTS
T ss_pred cccCcccccCccchhccCCCccee-ecccCHHHHHHHHHHhCCEEEEECCCCC-CCCCEEEEeccc
Confidence 2 233445677788877654320 1113677899999998999999999885 357899999986
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=98.98 E-value=1.3e-09 Score=78.44 Aligned_cols=140 Identities=9% Similarity=-0.003 Sum_probs=91.8
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCc
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIE 78 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~ 78 (163)
.+..|.+.|+++. .++.+......... .+.+.....++...... .......+.+.++...+.+.+... +..
T Consensus 199 ~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (343)
T d1m6sa_ 199 KGLCAPVGSVVVG-DRDFIERARKARKMLGGGMRQAGVLAAAGIIAL-----TKMVDRLKEDHENARFLALKLKEIGYSV 272 (343)
T ss_dssp STTCCSSCEEEEE-CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHH-----HHSSTTHHHHHHHHHHHHHHHHHHTCBC
T ss_pred ccccccccccccc-cHHHHhhhHhhCcccccccchhHHHHHhhhhhh-----hhhHHHHHHHHHHHHHhhhHHHHhccCc
Confidence 3667888999999 88888877766653 23333333222222111 111122233444555566666655 445
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
...|..+.++|++++..- .+..++++.|.+ +||.+.|. +++++||+++. +++|+++.+++.|+++++
T Consensus 273 ~~~~~~~~~v~~~~~~~~-----~~a~~l~~~L~~-~Gi~v~~~------~~~~iRi~~~~~~t~edid~~v~~l~~v~~ 340 (343)
T d1m6sa_ 273 NPEDVKTNMVILRTDNLK-----VNAHGFIEALRN-SGVLANAV------SDTEIRLVTHKDVSRNDIEEALNIFEKLFR 340 (343)
T ss_dssp CGGGCCSSEEEEECTTSS-----SCHHHHHHHHHH-HTEECEEE------ETTEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEEeCCCc-----ccHHHHHHHHHH-CCCEEecC------CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 555666778899887421 267899999887 89999873 26789998864 478999999999999999
Q ss_pred Hh
Q 042816 158 TC 159 (163)
Q Consensus 158 ~~ 159 (163)
++
T Consensus 341 ~~ 342 (343)
T d1m6sa_ 341 KF 342 (343)
T ss_dssp HH
T ss_pred Hh
Confidence 87
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=1.4e-08 Score=76.01 Aligned_cols=146 Identities=14% Similarity=0.039 Sum_probs=102.4
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhcc---c-CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLARF---S-SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~~---~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+++|...|++.+ ++++++.+...... . +.+++...++...++. ....+..++.+.++..++.+.+...|+.
T Consensus 248 a~gg~~Gg~v~g-~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~----~~~~~~~~~~l~~~~~~~~~~l~~~g~~ 322 (401)
T d1fc4a_ 248 ALGGASGGYTAA-RKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEM----VEAGSELRDRLWANARQFREQMSAAGFT 322 (401)
T ss_dssp TTCSSSCEEEEE-CHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccccCCcccccC-CHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcc----cccCHHHHHHHHHHHHHHHhhhcccCCc
Confidence 456778899999 99999999876552 2 3343343444444432 1223567888999999999999999888
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-CCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH-CIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~-~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
+..+++.+. -+.+... ....++++.|++ +||++.|-.... +.+...+|++++. +++|+++.+++.|.++.
T Consensus 323 ~~~~~~pIv-~v~~~~~------~~a~~~~~~L~~-~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~ 394 (401)
T d1fc4a_ 323 LAGADHAII-PVMLGDA------VVAQKFARELQK-EGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIG 394 (401)
T ss_dssp BCCSSSSEE-EEEEECH------HHHHHHHHHHHH-TTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEE-EEEECCH------HHHHHHHHHHHH-CCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 877666543 2333321 256689999887 899998643222 2336789999964 69999999999999999
Q ss_pred HHhhh
Q 042816 157 QTCKS 161 (163)
Q Consensus 157 ~~~~~ 161 (163)
+++.-
T Consensus 395 ~~lg~ 399 (401)
T d1fc4a_ 395 KQLGV 399 (401)
T ss_dssp HHTTS
T ss_pred HHhCC
Confidence 88753
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=98.81 E-value=3.1e-08 Score=73.93 Aligned_cols=138 Identities=15% Similarity=0.067 Sum_probs=94.0
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc---ccCCChHHHHHHH----HhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR---FSSVSAPSQNLLV----SMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~---~~~~s~~~q~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
|.--||+.+ ++++++.+.+... ++++.++.+.++. .++... ..++.+..+..+.+++.+.+...|+.
T Consensus 250 g~~Gg~v~~-~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~-----~~~~~r~~l~~~~~~~~~~l~~~g~~ 323 (396)
T d2bwna1 250 GVFGGYIAA-SARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTA-----EGQKLRDAQQMHAKVLKMRLKALGMP 323 (396)
T ss_dssp CSCCEEEEE-CHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSH-----HHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred cccccccch-hHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcc-----hHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 334589888 9999999988766 2344444443322 233333 23567788888999999999988888
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC-CCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC-IEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
+..+.+... -+.+... ..+..+++.|++++||.|.+...... .+...+||+++. ++.++++..++.|.+++
T Consensus 324 ~~~~~spIv-pv~ig~~------~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~iw 396 (396)
T d2bwna1 324 IIDHGSHIV-PVVIGDP------VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 396 (396)
T ss_dssp BCCCSSSCE-EEECCCH------HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred cCCCCCCEE-EEEeCCH------HHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHhC
Confidence 876554332 2233321 25678888888768999987544332 346789999965 68899999998888753
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=98.61 E-value=2.5e-07 Score=68.58 Aligned_cols=140 Identities=21% Similarity=0.186 Sum_probs=91.5
Q ss_pred CceeEEEEEecCHHHHHHHHHhhcc---cCCChHHHH-HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 5 PGFRISVIYSYNNSVLAAAKKLARF---SSVSAPSQN-LLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 5 ~G~RiG~~i~~~~~~~~~~~~~~~~---~~~s~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.|.-.|++.+ +.++++.++..... +++.++.+. ++...++-.. ....+..++.+.++..++.+.|++.|+.+.
T Consensus 237 ~g~~Gg~v~~-~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~--~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~ 313 (383)
T d1bs0a_ 237 FGVSGAAVLC-SSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIR--SDEGDARREKLAALITRFRAGVQDLPFTLA 313 (383)
T ss_dssp TSSCCEEEEE-CHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHTTSSCEEC
T ss_pred cccccccccc-chhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 4556789999 89999999877552 333334332 2223322110 123456777788889999999999888776
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC-CCCCceEEEEEec-CChhHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH-CIEPGWFSFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~-~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~ 155 (163)
++++.+. .+.++.. ..+..+++.|++ +||++.+..... +.++..+||++.. +++|+++..++.|..+
T Consensus 314 ~~~s~Ii-~v~~g~~------~~a~~~~~~L~~-~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 314 DSCSAIQ-PLIVGDN------SRALQLAEKLRQ-QGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp SCCSSBC-CEEEESH------HHHHHHHHHHHH-TTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCEE-EEEECCH------HHHHHHHHHHHH-CCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 6555432 2222221 256788999887 899998754322 2336689999965 6889999888887653
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=2.8e-06 Score=62.37 Aligned_cols=101 Identities=11% Similarity=0.104 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccccCC----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQLGIECAKSN----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE 129 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~ 129 (163)
++...+...+..+++++.+...|+....++ ....+.+.+|+.+ +..++...|++++||.+..|.. ...
T Consensus 281 ~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~~~------~~~~~~~~L~~~~gI~v~~G~~--~~~ 352 (388)
T d1h0ca_ 281 LENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGY------DWRDIVSYVIDHFDIEIMGGLG--PST 352 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTC------CHHHHHHHHHHHHCEECEECCG--GGT
T ss_pred cccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECCCCC------CHHHHHHHHHhcCCEEEeCCch--hhc
Confidence 466677777788888888888765443222 1223455677654 7889999998878999998853 223
Q ss_pred CceEEEE-Eec-CChhHHHHHHHHHHHHHHHhhhc
Q 042816 130 PGWFSFS-FTL-LTEKDIHVVMERIRRISQTCKSH 162 (163)
Q Consensus 130 ~~~iRi~-~~~-~~~~~l~~~~~~l~~~~~~~~~~ 162 (163)
.+.+||| ++. .+.++++..++.|+++++++++.
T Consensus 353 ~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~ 387 (388)
T d1h0ca_ 353 GKVLRIGLLGCNATRENVDRVTEALRAALQHCPKK 387 (388)
T ss_dssp TTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 5799999 543 47889999999999999998764
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=98.34 E-value=4.5e-06 Score=59.29 Aligned_cols=85 Identities=18% Similarity=0.267 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceE
Q 042816 55 NINRERLRRLYVKFVAGLRQL-GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWF 133 (163)
Q Consensus 55 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~i 133 (163)
.+......++...+.+.+.++ |+.+..|..+.+++++++ .+.++.|++ .|+.|.++. .+++++
T Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~-----------~~~~~~L~~-~gi~v~~~~----~~~~~l 321 (345)
T d1v72a1 258 LRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD-----------SAMIDALLK-AGFGFYHDR----WGPNVV 321 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC-----------HHHHHHHHH-TTCBCBCSS----SSTTEE
T ss_pred hhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcC-----------HHHHHHHHH-cCCCccccC----CCCCEE
Confidence 344555556667777888887 888887877888888876 235667776 899876542 237899
Q ss_pred EEEEec-CChhHHHHHHHHHHHH
Q 042816 134 SFSFTL-LTEKDIHVVMERIRRI 155 (163)
Q Consensus 134 Ri~~~~-~~~~~l~~~~~~l~~~ 155 (163)
||+++. .++|+++.+++.|+++
T Consensus 322 R~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 322 RFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 999874 4788999999888763
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=98.33 E-value=2.3e-06 Score=60.17 Aligned_cols=132 Identities=15% Similarity=0.107 Sum_probs=78.1
Q ss_pred CCCceeEEEEEecCHHHHHHHHHhhc---c-cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 042816 3 SLPGFRISVIYSYNNSVLAAAKKLAR---F-SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIE 78 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~~~~~---~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~ 78 (163)
+..+.+.++... ............. . .........++..++.+..+ ....+....++..+.+.|+..|++
T Consensus 203 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~g~~ 276 (340)
T d1svva_ 203 AGGMFGEALIIL-NDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLF-----FELGAHSNKMAAILKAGLEACGIR 276 (340)
T ss_dssp TTCSSCEEEEEC-SGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHH-----HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cccccccccccc-chhhhhhhhhhcccccCccchhhHHHHHHHHHhhhhHH-----HHHHHHHHHHHhhhHHHHhcCCCe
Confidence 445556666666 3333222222221 1 22333344455555555432 344556677888899999999999
Q ss_pred cccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 79 CAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 79 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
+..|..+.+++++++. +....|+++..+...+... .+++.+|+|++. .++++++.+++.|++
T Consensus 277 ~~~p~~~~~v~~~~~~-----------~~~~~l~~~~~~~~~~~~~---~~~~~vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 277 LAWPSASNQLFPILEN-----------TMIAELNNDFDMYTVEPLK---DGTCIMRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp BSSCCSSSEECBEEEH-----------HHHHHHTTTEECEEEEEET---TTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred eecCCCceEEEEeCCH-----------HHHHHHHHhhhhhcccccC---CCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 8877777888888763 2344455532222222221 237899998763 488999988888875
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=98.24 E-value=1.6e-05 Score=57.90 Aligned_cols=142 Identities=8% Similarity=-0.021 Sum_probs=85.9
Q ss_pred CCCceeEEEEEecCHHHHHHHH-------------Hhhc---ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 042816 3 SLPGFRISVIYSYNNSVLAAAK-------------KLAR---FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYV 66 (163)
Q Consensus 3 ~~~G~RiG~~i~~~~~~~~~~~-------------~~~~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 66 (163)
|.||+ |+++. +++.++.+. .... +++++...-.++.++|+.- .+...+..+..+....
T Consensus 188 gppG~--~~v~~-s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~---~~~~~~~~~~~~~~~~ 261 (348)
T d1iuga_ 188 CPPGL--GFVAL-SPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEV---LPRLEEHLALKAWQNA 261 (348)
T ss_dssp CCSCE--EEEEE-CHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH---GGGHHHHHHHHHHHHH
T ss_pred cCCce--eeeee-chHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHH---HHHHhHHHHHHHHHHH
Confidence 56665 88989 777665421 1111 2345554555555555421 1112222333344445
Q ss_pred HHHHHhhhcCCccccCCce-eEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEe-cCChhH
Q 042816 67 KFVAGLRQLGIECAKSNGG-FYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFT-LLTEKD 144 (163)
Q Consensus 67 ~l~~~l~~~g~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~~ 144 (163)
.+...+...|++..+..-+ -...+.+|+.+ +..++.+.|.+ +|+.+.+|. +......+||+.- ..+.++
T Consensus 262 ~~~~~~~~~gl~~~~~~~s~~v~~~~~P~g~------~~~~~~~~l~~-~gi~i~~G~--~~l~~~~~RIg~mG~~~~~d 332 (348)
T d1iuga_ 262 LLYGVGEEGGLRPVPKRFSPAVAAFYLPEGV------PYARVKEAFAQ-RGAVIAGGQ--GPLKGKVFRLSLMGAYDRYE 332 (348)
T ss_dssp HHHHHHHHTTCEESCSSBCTTCEEEECCTTC------CHHHHHHHHHT-TTEECEECC--GGGTTTEEEECCCSSCCHHH
T ss_pred HHhhhhhhhhhccChhhcCCeEEEEECCCCC------CHHHHHHHHHH-CCeEEEcCc--cccCCCEEEEeCCCCCCHHH
Confidence 5566555557766532211 12456777665 77888887754 899999885 3333568999864 458889
Q ss_pred HHHHHHHHHHHHHHh
Q 042816 145 IHVVMERIRRISQTC 159 (163)
Q Consensus 145 l~~~~~~l~~~~~~~ 159 (163)
++..++.|+++++++
T Consensus 333 ~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 333 ALGVAGMFREVLEEI 347 (348)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=98.21 E-value=2.4e-05 Score=56.90 Aligned_cols=96 Identities=8% Similarity=0.080 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccccC---CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCC
Q 042816 54 ININRERLRRLYVKFVAGLRQLGIECAKS---NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEP 130 (163)
Q Consensus 54 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~ 130 (163)
.+...+..+++..++.+.+...++....+ .....+.+.+|+.+ +..++...|++++||.+..|.... ..
T Consensus 277 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~p~~~------~~~~l~~~L~~~~gI~v~~G~~~~--~~ 348 (377)
T d1vjoa_ 277 LANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGV------DGKAVARRLLNEHNIEVGGGLGEL--AG 348 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTC------CHHHHHHHHHHHHCEECEECCGGG--TT
T ss_pred chHHHHHHHHHhhhhhhhhhccCceeecChHhcCCeEEEEECCCCC------CHHHHHHHHHhcCCEEEecCcccc--cC
Confidence 46677777888888999998876544321 12233455666654 789999999887899999886533 36
Q ss_pred ceEEEE-Eec-CChhHHHHHHHHHHHHHH
Q 042816 131 GWFSFS-FTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 131 ~~iRi~-~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
+.+||| ++. .+.|+++..++.|+++++
T Consensus 349 ~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 349 KVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp TEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred CEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 799999 453 257889999999988763
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=98.15 E-value=3.3e-05 Score=56.43 Aligned_cols=92 Identities=10% Similarity=-0.011 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhhhcCCccccC----CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEE
Q 042816 60 RLRRLYVKFVAGLRQLGIECAKS----NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSF 135 (163)
Q Consensus 60 ~~~~~~~~l~~~l~~~g~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi 135 (163)
..++........+...++....+ .+...+.+.+|+.+ +..++...|++++||.|.+|.+. ...+.+||
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g~------~~~~l~~~l~~~~gI~v~~G~~~--~~~~~~RI 356 (388)
T d2ch1a1 285 RRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGV------DWWKVSQYAMNNFSLEVQGGLGP--TFGKAWRV 356 (388)
T ss_dssp HHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTC------CHHHHHHHHHHHHCBCCBCCCGG--GTTTEEEE
T ss_pred HHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCCCC------CHHHHHHHHhhcCCEEEeCCCcc--ccCCEEEE
Confidence 33334444444444444333222 12234556787654 77899999988789999998653 23568999
Q ss_pred E-EecC-ChhHHHHHHHHHHHHHHHh
Q 042816 136 S-FTLL-TEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 136 ~-~~~~-~~~~l~~~~~~l~~~~~~~ 159 (163)
| ++.. +.|+++..++.|++++++.
T Consensus 357 s~~g~~~t~edI~~ll~alke~L~~~ 382 (388)
T d2ch1a1 357 GIMGECSTVQKIQFYLYGFKESLKAT 382 (388)
T ss_dssp ECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCCCCHHHHHHHHHHHHHHHHhh
Confidence 9 6643 5789999999999999874
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.07 E-value=0.0001 Score=53.12 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=72.9
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC---ceeEEEeecCCcccCCChhhHHHH
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSN---GGFYCWADMSGLISSYSEKGELEL 107 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~ 107 (163)
+++.....++...+..-.. +...+...+...+..+.+.+.++..|+....+. +...+.+.+|+... .+..++
T Consensus 238 t~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~----~~~~~~ 312 (361)
T d1m32a_ 238 TSPTHTVLAFAQALKELAK-EGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQ----YRFSEF 312 (361)
T ss_dssp CCCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTT----CCHHHH
T ss_pred CCCchhhhHHHHHHHHHHH-hcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCcEEEEECCCCCC----CCHHHH
Confidence 4555555555544433211 223455556667777778888877765543322 22233456664321 256788
Q ss_pred HHHHHHhcCeEEcCCCCCCCCCCceEEEEE-ecCChhHHHHHHHHHHHHH
Q 042816 108 WDKLLNVAKVNVTPGSSCHCIEPGWFSFSF-TLLTEKDIHVVMERIRRIS 156 (163)
Q Consensus 108 ~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~-~~~~~~~l~~~~~~l~~~~ 156 (163)
.+.|.+ +||.+.+|.... ++.+|||. ...++++++..++.|++++
T Consensus 313 ~~~l~~-~gi~i~~G~~~~---~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 313 YRRLKE-QGFVIYPGKVSQ---SDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp HHHHHH-TTEECEECCCSS---SCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHH-CCcEEECCCcCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 888866 899999885433 67999995 3458889999999888764
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=1.4e-05 Score=59.76 Aligned_cols=148 Identities=10% Similarity=0.020 Sum_probs=87.4
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ccccC
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI-ECAKS 82 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~~~~~ 82 (163)
|+-+|.+++ ++++.+.+..... .++.++++..++.+.|+--+. ++..++..+.-....+.+.+.++++++ .-...
T Consensus 272 G~P~~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~-~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg 349 (425)
T d1sffa_ 272 GFPLAGVTG-RAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ-ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRG 349 (425)
T ss_dssp SSCCEEEEE-EHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEE
T ss_pred CcceEEEEE-cHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHH-hhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEc
Confidence 677899999 8888777654433 246677777776666653110 122333333333334444444455533 22223
Q ss_pred CceeEEEeecCCc--ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 83 NGGFYCWADMSGL--ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 83 ~~g~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
.| ..+.+++... ...+...-...+.+.+++ +||++.++..+ .+.+|++.+. +++++++++++++.++++++
T Consensus 350 ~G-l~~~i~f~~~~~~~~~~~~~~~~~~~~l~~-~Gvl~~~~g~~----~n~i~~~PpL~it~~eid~~l~~l~~al~ei 423 (425)
T d1sffa_ 350 LG-AMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPY----YNVLRILVPLTIEDAQIRQGLEIISQCFDEA 423 (425)
T ss_dssp ET-TEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTT----SCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cc-cEEEEEEeccCccCCccHHHHHHHHHHHHH-CCCEEeccCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 33 3444444221 111122245678888887 89998874322 4678888653 58899999999999999987
Q ss_pred hh
Q 042816 160 KS 161 (163)
Q Consensus 160 ~~ 161 (163)
++
T Consensus 424 kk 425 (425)
T d1sffa_ 424 KQ 425 (425)
T ss_dssp CC
T ss_pred cC
Confidence 63
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.03 E-value=0.00011 Score=54.21 Aligned_cols=145 Identities=10% Similarity=0.050 Sum_probs=88.4
Q ss_pred CCceeEEEEEecCHHHHHHHHHhhcc-c-CCChHHHH-HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 4 LPGFRISVIYSYNNSVLAAAKKLARF-S-SVSAPSQN-LLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 4 ~~G~RiG~~i~~~~~~~~~~~~~~~~-~-~~s~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
++|=|-|.+.+ +.++.+.+.+..-+ . +...+.+. +.+..|.+- .....+...+....+.+.|.+.|.+.|+++.
T Consensus 228 lrGPrgg~I~~-~~~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea--~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv 304 (405)
T d1kl1a_ 228 LRGPRGGMILC-QEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEA--LQDDFKAYAKRVVDNAKRLASALQNEGFTLV 304 (405)
T ss_dssp TCCCSCEEEEE-CHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHTTCEEG
T ss_pred ccCCCCceEEe-cchhHHHHHhhhCcccccCcchhHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHhcCCceee
Confidence 67889999999 89998888777654 2 22222222 112222210 0112234444556689999999999998886
Q ss_pred cC-CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc----CCCCCCCCCCceEEEEEec-----CChhHHHHHHH
Q 042816 81 KS-NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT----PGSSCHCIEPGWFSFSFTL-----LTEKDIHVVME 150 (163)
Q Consensus 81 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----pg~~f~~~~~~~iRi~~~~-----~~~~~l~~~~~ 150 (163)
.. .-+=.+|+++.... .+.... +.+|++.||.+. |++.=....+..|||.... ..++++++..+
T Consensus 305 ~ggTd~H~vlvdl~~~~-----~~g~~a-e~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~ 378 (405)
T d1kl1a_ 305 SGGTDNHLLLVDLRPQQ-----LTGKTA-EKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAA 378 (405)
T ss_dssp GGSCSSSEEEEECGGGT-----CCHHHH-HHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred cCCCccceeeccccccC-----CcHHHH-HHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHH
Confidence 42 33345788885421 144444 445566899886 4332111125789999864 45678888888
Q ss_pred HHHHHHH
Q 042816 151 RIRRISQ 157 (163)
Q Consensus 151 ~l~~~~~ 157 (163)
.|.++++
T Consensus 379 ~I~~~l~ 385 (405)
T d1kl1a_ 379 IIGLVLK 385 (405)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8777774
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=98.01 E-value=6.4e-06 Score=60.30 Aligned_cols=87 Identities=15% Similarity=0.263 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-CCccc---cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCC
Q 042816 55 NINRERLRRLYVKFVAGLRQL-GIECA---KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEP 130 (163)
Q Consensus 55 ~~~~~~~~~~~~~l~~~l~~~-g~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~ 130 (163)
+...+...++.+++.+.|+++ |+++. .+.+++. ++.++... +...+.+.|.+ +||.|.. ++ .+
T Consensus 287 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~v-sf~~~~~~------~~~~i~~~L~~-~gi~v~~---~~--~~ 353 (381)
T d1elua_ 287 EERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLV-SFTVDSPL------GHRAIVQKLEE-QRIYLRT---IA--DP 353 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEE-EEEECSSS------CHHHHHHHHHH-TTEECEE---ET--TT
T ss_pred ccchhhhhhHHHHHHHHHhcCCCeEecCCCCccccEE-EEEcCCCC------CHHHHHHHHHh-CCcEEEe---cC--CC
Confidence 444567777888999999998 76554 3566644 34454432 55677776654 8998864 22 26
Q ss_pred ceEEEEEec-CChhHHHHHHHHHHH
Q 042816 131 GWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 131 ~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
+++|||+.. .+.++++.+++.|++
T Consensus 354 ~~lRis~~~~nt~edid~ll~~l~e 378 (381)
T d1elua_ 354 DCIRACCHYITDEEEINHLLARLAD 378 (381)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHh
Confidence 899999873 377898888888875
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=97.89 E-value=3.4e-05 Score=57.25 Aligned_cols=138 Identities=13% Similarity=0.130 Sum_probs=84.5
Q ss_pred eeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ccccCC
Q 042816 7 FRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGI-ECAKSN 83 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~-~~~~~~ 83 (163)
+-+|.+++ .+++.+.+...... ++.++++..++.+.|+.-.- +...+...+.-....+.+.+.++++.+ .-....
T Consensus 262 ~p~~~v~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~ 339 (404)
T d1z7da1 262 YPISAVLA-NDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLIN-EKLCENAEKLGGPFLENLKRELKDSKIVRDVRGK 339 (404)
T ss_dssp SCCEEEEE-CHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEE
T ss_pred CCcccccc-hHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhc-chhhhhhccchhHHHHHHHHHHhcCCCeEEEEee
Confidence 67899999 88887776554332 45677777777666643110 122233333333333444455555532 222233
Q ss_pred ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 84 GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
|.++.+++.... .+..+++..+++ +||.+.|.. ++.+|++.+. ++++++++++++|.++++++
T Consensus 340 -Gl~~~i~~~~~~-----~~~~~~~~~l~~-~Gl~~~~~~------~~~ir~~Ppl~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 340 -GLLCAIEFKNEL-----VNVLDICLKLKE-NGLITRDVH------DKTIRLTPPLCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp -TTEEEEEECTTT-----CCHHHHHHHHHH-TTEECCEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -CcEEEEEEcCCc-----ccHHHHHHHHHh-CCeEEecCC------CCEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence 344556665421 245678888876 899986531 4678887542 48899999999999999875
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=0.00026 Score=52.30 Aligned_cols=144 Identities=10% Similarity=0.058 Sum_probs=88.1
Q ss_pred CCceeEEEEEec--CHHHHHHHHHhhcc-c-CCChHHHHH-HHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 4 LPGFRISVIYSY--NNSVLAAAKKLARF-S-SVSAPSQNL-LVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 4 ~~G~RiG~~i~~--~~~~~~~~~~~~~~-~-~~s~~~q~~-~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
++|=|-|.+.+. ++++.+.+.+..-+ . +.+.+.+.+ .+..|. ++++ +...+...++.+.|.+.|.+.
T Consensus 230 lrGPrggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~f-----k~Y~~qvv~NA~~La~~L~~~ 304 (416)
T d1dfoa_ 230 LAGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEF-----KTYQQQVAKNAKAMVEVFLER 304 (416)
T ss_dssp TCCCSCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHH-----HHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHH-----HHHHHHHHHHHHHHHHHHHhC
Confidence 688899999983 36888888766554 2 222233221 122222 2333 334455556899999999999
Q ss_pred CCcccc-CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc----CCCCCCCCCCceEEEEEec-----CChhHH
Q 042816 76 GIECAK-SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT----PGSSCHCIEPGWFSFSFTL-----LTEKDI 145 (163)
Q Consensus 76 g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----pg~~f~~~~~~~iRi~~~~-----~~~~~l 145 (163)
|+++.. ..-+-.+++++...- .+.....+ ++++.||.+. |+..-....+..|||+... ..++++
T Consensus 305 G~~iv~ggTdnHlvlvdl~~~~-----~~G~~a~~-~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~ 378 (416)
T d1dfoa_ 305 GYKVVSGGTDNHLFLVDLVDKN-----LTGKEADA-ALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEA 378 (416)
T ss_dssp TCEEGGGSCSSSEEEEECGGGT-----CCHHHHHH-HHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHH
T ss_pred CcccccCCCCCceeEEEecccC-----CCHHHHHH-HHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHH
Confidence 988863 233345678885421 14455555 4566899975 3322111126789999864 456788
Q ss_pred HHHHHHHHHHHHH
Q 042816 146 HVVMERIRRISQT 158 (163)
Q Consensus 146 ~~~~~~l~~~~~~ 158 (163)
++..+.|.+++..
T Consensus 379 ~~iA~~I~~~l~~ 391 (416)
T d1dfoa_ 379 KELAGWMCDVLDS 391 (416)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 8888888777653
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=0.00034 Score=51.56 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=71.9
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccccC--CceeEEEeecCCcccCCChhhHHHH
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECAKS--NGGFYCWADMSGLISSYSEKGELEL 107 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~ 107 (163)
+.+.+...++..+++--. +.-++...++.....+.+.+.++.. ......| .++.. .+.++.. +..++
T Consensus 277 T~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~iv-sf~~~~~-------~~~~~ 346 (405)
T d1jf9a_ 277 TPNTGGIIGLGAALEYVS--ALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVI-AFNLGKH-------HAYDV 346 (405)
T ss_dssp SCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEE-EEEETTC-------CHHHH
T ss_pred CCcHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCcEE-EEEcCCC-------CHHHH
Confidence 344555555555554211 1123555555566666677777776 3333333 23433 3455542 56777
Q ss_pred HHHHHHhcCeEEcCCCCCCC------CCCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 108 WDKLLNVAKVNVTPGSSCHC------IEPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 108 ~~~l~~~~gi~v~pg~~f~~------~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
...| +++||.+..|+.+.. ..++++|||+.. .+.++++.+++.|+++.+-+
T Consensus 347 ~~~L-~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~~ 404 (405)
T d1jf9a_ 347 GSFL-DNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 404 (405)
T ss_dssp HHHH-HHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 7766 459999998876531 226899999975 37788999888888877643
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=97.58 E-value=0.003 Score=47.01 Aligned_cols=152 Identities=11% Similarity=0.076 Sum_probs=88.5
Q ss_pred CCCceeEEEEEecC-HHHHHHHHHhhc----c---cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042816 3 SLPGFRISVIYSYN-NSVLAAAKKLAR----F---SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ 74 (163)
Q Consensus 3 ~~~G~RiG~~i~~~-~~~~~~~~~~~~----~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 74 (163)
+..+.+.|+++..+ ..+......... . ...+.....++...+.... .+...+...++.+++.+.|++
T Consensus 266 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~-----~~~~~~~~~~~~~~l~~~L~~ 340 (465)
T d1ax4a_ 266 DPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGT-----EEEYLHYRIGQVKYLGDRLRE 340 (465)
T ss_dssp TTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhh-----hHHHHHHHHHHHHHHHHHHHh
Confidence 56788889999832 233333322211 1 1223333333333322211 122333445567889999999
Q ss_pred cCCccccCCceeEEEeecCCccc---CCChhhHHHHHHHHHHhcCeEEcCCCC------C--C---CCCCceEEEEEec-
Q 042816 75 LGIECAKSNGGFYCWADMSGLIS---SYSEKGELELWDKLLNVAKVNVTPGSS------C--H---CIEPGWFSFSFTL- 139 (163)
Q Consensus 75 ~g~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~gi~v~pg~~------f--~---~~~~~~iRi~~~~- 139 (163)
.|+.+.++.++++++++...... ...+ ....+...++.+.||...+... . + ....+.+|+++..
T Consensus 341 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~ 419 (465)
T d1ax4a_ 341 AGIPIQYPTGGHAVFVDCKKLVPQIPGDQF-PAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARR 419 (465)
T ss_dssp TTCCBCSSCCSSEEEEESTTTCTTSCGGGC-HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTT
T ss_pred hcCccccCCCcceeeeehhhhcCCCccccc-hhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCC
Confidence 99998889999988877654331 1122 3455566666668987543211 0 0 0125689998742
Q ss_pred -CChhHHHHHHHHHHHHHHHhh
Q 042816 140 -LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 140 -~~~~~l~~~~~~l~~~~~~~~ 160 (163)
.+.|+++..++.|.+++++..
T Consensus 420 ~~T~eeiD~vv~~l~~v~~~~~ 441 (465)
T d1ax4a_ 420 VYTNDHMDYIADALIGLKEKFA 441 (465)
T ss_dssp SSCHHHHHHHHHHHHTTHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 378999999999998887654
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=97.51 E-value=0.001 Score=48.88 Aligned_cols=116 Identities=11% Similarity=0.094 Sum_probs=74.2
Q ss_pred CChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcccc------CCceeEEEeecCCcccCCChhhH
Q 042816 32 VSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIECAK------SNGGFYCWADMSGLISSYSEKGE 104 (163)
Q Consensus 32 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~------~~~g~~~~~~~~~~~~~~~~~~~ 104 (163)
.+.+...++...++--. +.-+++..++.....+++.+.+.+. ++.... ..++. +.+.++.. +.
T Consensus 277 ~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i-v~f~~~~~-------~~ 346 (408)
T d1t3ia_ 277 PAIAEAIALGAAVDYLT--DLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAAL-ASFNVAGL-------HA 346 (408)
T ss_dssp CCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSE-EEEEETTB-------CH
T ss_pred HHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceE-EEEEeCCC-------CH
Confidence 45555555555554211 1223556666667777788888776 443332 12333 33345542 66
Q ss_pred HHHHHHHHHhcCeEEcCCCCCCC------CCCceEEEEEec-CChhHHHHHHHHHHHHHHH
Q 042816 105 LELWDKLLNVAKVNVTPGSSCHC------IEPGWFSFSFTL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 105 ~~~~~~l~~~~gi~v~pg~~f~~------~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
.++...|. ++||.+..|+.+.. ..++.+|||+.. .+.++++.+++.|+++++.
T Consensus 347 ~~v~~~L~-~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~ 406 (408)
T d1t3ia_ 347 SDVATMVD-QDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRF 406 (408)
T ss_dssp HHHHHHHH-TTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-hCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 78887764 59999998876532 236789999974 3789999999999998864
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=97.49 E-value=0.0013 Score=48.55 Aligned_cols=133 Identities=11% Similarity=0.091 Sum_probs=74.8
Q ss_pred eEEEEEecCHHHHHHHHHhhcccCCChHHHH--HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CCcccc
Q 042816 8 RISVIYSYNNSVLAAAKKLARFSSVSAPSQN--LLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL----GIECAK 81 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~~~~ 81 (163)
..|++...++.+++.+.......+...+... +....+.. +..+...+...++.+++.+.|+++ |..+..
T Consensus 285 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~-----~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~ 359 (434)
T d2z67a1 285 GGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGS-----KNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLD 359 (434)
T ss_dssp SCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCC
T ss_pred CccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHH-----hcchhHHHHHHHHHHHHHHHHHHhhhhcCceecC
Confidence 3455666578888888766654333333332 22222222 222344444455556665555543 666655
Q ss_pred CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc----CCCCCC-----CCCCceEEEEEec-CChhHHHHHHHH
Q 042816 82 SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT----PGSSCH-----CIEPGWFSFSFTL-LTEKDIHVVMER 151 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----pg~~f~-----~~~~~~iRi~~~~-~~~~~l~~~~~~ 151 (163)
+.....+.+.+.. +..++...|.+ .||... |...++ ....+++|++++. .+.|+++.+++.
T Consensus 360 ~~~~~~~~~~~~~--------~~~~l~~~L~~-~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~edID~~i~~ 430 (434)
T d2z67a1 360 VESPIASCISVNS--------DPVEIAAKLYN-LRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSK 430 (434)
T ss_dssp CCCSSEEEEECSS--------CHHHHHHHHHH-TTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHH
T ss_pred CCCCceeeeecCC--------CHHHHHHHHHH-cCCeeeehhhhccccCeeeecccCCCeEEEecCCCCCHHHHHHHHHH
Confidence 5544444444443 56788887876 888532 222211 1125789999864 378898888888
Q ss_pred HHH
Q 042816 152 IRR 154 (163)
Q Consensus 152 l~~ 154 (163)
|++
T Consensus 431 L~k 433 (434)
T d2z67a1 431 LEK 433 (434)
T ss_dssp HHT
T ss_pred Hhc
Confidence 865
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=97.44 E-value=0.0011 Score=49.63 Aligned_cols=146 Identities=14% Similarity=0.131 Sum_probs=86.8
Q ss_pred eEEEEEecCHHHHHHHHHhhcc-------cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q 042816 8 RISVIYSYNNSVLAAAKKLARF-------SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECA 80 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~~~-------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~ 80 (163)
.-|+++..++++.+.++..... ...+.....+++..+..... ++++ +.-.++.+++.+.|.+.|+.+.
T Consensus 263 ~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~-~~~l----~~r~~~~~~L~e~L~~~g~~vv 337 (456)
T d1c7ga_ 263 IGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYI----EHRVKQVRYLGDKLREAGVPIV 337 (456)
T ss_dssp SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHH----HHHHHHHHHHHHHHHHTTCCBC
T ss_pred ceeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcC-HHHH----HHHHHHHHHHHHHHHhccCCcc
Confidence 3478887678888877665431 12333333333332222110 1222 2224456788899999999998
Q ss_pred cCCceeEEEeecCCcc---cCCChhhHHHHHHHHHHhcCeEEcC-CCC-CCC---------CCCceEEEEEec--CChhH
Q 042816 81 KSNGGFYCWADMSGLI---SSYSEKGELELWDKLLNVAKVNVTP-GSS-CHC---------IEPGWFSFSFTL--LTEKD 144 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~gi~v~p-g~~-f~~---------~~~~~iRi~~~~--~~~~~ 144 (163)
.|.++..++++..... ....+ ....+...|+.+.||...+ |+. ++. +..+.+|+++.. .+.++
T Consensus 338 ~p~g~~~v~vda~~~~~~i~~~~~-~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~ 416 (456)
T d1c7ga_ 338 EPTGGHAVFLDARRFCPHLTQDQF-PAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAH 416 (456)
T ss_dssp SSCCSSEEEEEHHHHCTTSCGGGC-HHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHH
T ss_pred cCCCCcceeEechhhccCCCcccc-cHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHH
Confidence 8999988887654322 11121 4566777677668997543 211 000 114579999863 37788
Q ss_pred HHHHHHHHHHHHHHh
Q 042816 145 IHVVMERIRRISQTC 159 (163)
Q Consensus 145 l~~~~~~l~~~~~~~ 159 (163)
++..++.|.++.++.
T Consensus 417 iD~Vae~i~~v~~~~ 431 (456)
T d1c7ga_ 417 MDVVADGIIKLYQHK 431 (456)
T ss_dssp HHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999887643
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=97.37 E-value=0.00043 Score=51.47 Aligned_cols=141 Identities=11% Similarity=0.126 Sum_probs=76.8
Q ss_pred ceeEEEEEecCHHHHHHHHHhhcc-----cCCChHHHHHHHHh---cCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042816 6 GFRISVIYSYNNSVLAAAKKLARF-----SSVSAPSQNLLVSM---LSDTKFVQKFININRERLRRLYVKFVAGLRQLGI 77 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~~-----~~~s~~~q~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~ 77 (163)
|+-+|.+++ .+++.+.+...... ++.++++-.++.+. +++.+. .+.+++.-+.+++..+. ..++.++
T Consensus 272 G~p~~a~~~-~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l-~~~~~~~g~~l~~~L~~---l~~~~~~ 346 (427)
T d2gsaa_ 272 GLPVGAYGG-KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGT-YEYLDQITKRLSDGLLA---IAQETGH 346 (427)
T ss_dssp TSCCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTH-HHHHHHHHHHHHHHHHH---HHHHTTC
T ss_pred Ccceeeeee-hHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhH-HhhhhHHHHHHHHHHHH---HHhhcCC
Confidence 667888888 89998877653321 34566666555544 444332 34444444444444433 3334443
Q ss_pred cccc-CCceeE-E-EeecCCc----ccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHHHHH
Q 042816 78 ECAK-SNGGFY-C-WADMSGL----ISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVME 150 (163)
Q Consensus 78 ~~~~-~~~g~~-~-~~~~~~~----~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~~~~ 150 (163)
.+.. .-+|++ + |.+-+.. ....+......+...+++ +||++.|+. +. . +-+++. +++++++++++
T Consensus 347 ~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~-~Gv~l~p~~-~~----~-~~~~l~-~Te~dId~~l~ 418 (427)
T d2gsaa_ 347 AACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPSQ-FE----A-GFTSLA-HTEEDIDATLA 418 (427)
T ss_dssp CCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSST-TS----C-EECCTT-CCHHHHHHHHH
T ss_pred CcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHH-CCEEECCCC-Cc----c-eeCCCC-CCHHHHHHHHH
Confidence 3322 223332 1 2111110 011112223467777876 899998853 11 1 224544 48999999999
Q ss_pred HHHHHHHHh
Q 042816 151 RIRRISQTC 159 (163)
Q Consensus 151 ~l~~~~~~~ 159 (163)
.+.++++++
T Consensus 419 al~~al~~L 427 (427)
T d2gsaa_ 419 AARTVMSAL 427 (427)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHhC
Confidence 999998764
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=97.22 E-value=0.002 Score=48.07 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=84.4
Q ss_pred CCceeEEEEEecCH---------------HHHHHHHHhhcc-c-CCChHHHH-HHHHhcC---ChHHHHHHHHHHHHHHH
Q 042816 4 LPGFRISVIYSYNN---------------SVLAAAKKLARF-S-SVSAPSQN-LLVSMLS---DTKFVQKFININRERLR 62 (163)
Q Consensus 4 ~~G~RiG~~i~~~~---------------~~~~~~~~~~~~-~-~~s~~~q~-~~~~~l~---~~~~~~~~~~~~~~~~~ 62 (163)
++|=|-|.|.+ ++ ++.+.+.+.--+ . +...+.+. +.+.++. ++++ . ...+...
T Consensus 241 lrGPrgGiIl~-~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~f-k----~Ya~qVv 314 (463)
T d2a7va1 241 LRGARSGLIFY-RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMF-R----EYSLQVL 314 (463)
T ss_dssp GCSCSCEEEEE-ECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHH-H----HHHHHHH
T ss_pred hcCCCceEEEE-cccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchH-H----HHHHHHH
Confidence 57888899888 43 567777666543 2 22233322 1122222 2333 3 4444555
Q ss_pred HHHHHHHHHhhhcCCcccc-CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc----CCCCCCCCCCceEEEEE
Q 042816 63 RLYVKFVAGLRQLGIECAK-SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT----PGSSCHCIEPGWFSFSF 137 (163)
Q Consensus 63 ~~~~~l~~~l~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----pg~~f~~~~~~~iRi~~ 137 (163)
++.+.|.+.|.+.|+++.. ..-+-.+++++.... .+.....+ .+++.||.+. |+.. ....+..|||..
T Consensus 315 ~NAk~La~~L~~~G~~vv~ggTdnHlvlvdl~~~~-----~~G~~ae~-~Le~~gI~~Nkn~iP~D~-~~~~~sGiRiGT 387 (463)
T d2a7va1 315 KNARAMADALLERGYSLVSGGTDNHLVLVDLRPKG-----LDGARAER-VLELVSITANKNTCPGDR-SAITPGGLRLGA 387 (463)
T ss_dssp HHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTT-----CCHHHHHH-HHHHTTEECEEECCTTCC-CSSSCSEEEEES
T ss_pred HHHHHHHHHHHhCCCeeecCCCCCceeeeeccccC-----CCHHHHHH-HHHhccCccCCccCCCCC-CCCCCCceEeCC
Confidence 5899999999999988763 344456788885421 14455555 4456999975 4432 112267899998
Q ss_pred ec-----CChhHHHHHHHHHHHHHH
Q 042816 138 TL-----LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 138 ~~-----~~~~~l~~~~~~l~~~~~ 157 (163)
.. ..++++++.-+.|.+++.
T Consensus 388 ~a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 388 PALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 64 355777777777776654
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=97.18 E-value=0.0014 Score=47.56 Aligned_cols=102 Identities=21% Similarity=0.273 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-CC--ccccCCc-eeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC
Q 042816 52 KFININRERLRRLYVKFVAGLRQL-GI--ECAKSNG-GFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC 127 (163)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~l~~~-g~--~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~ 127 (163)
+......+.+++....+.+.|..+ +. ....+.. ...+.+.++.. +...+...| .++.|+.|..+..
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l---~~i~v~~G~~c~~ 329 (391)
T d1p3wa_ 260 EEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV-------EGESLIMAL---KDLAVSSGSACTS 329 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTS-------CHHHHHHHT---TTEECBCCCC---
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCCC-------ChHHHHHHh---CCCEEEccccccC
Confidence 334455566777778888888776 32 2222222 22222334432 456666544 4677777654421
Q ss_pred C-----------------CCceEEEEEec-CChhHHHHHHHHHHHHHHHhhhcC
Q 042816 128 I-----------------EPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKSHS 163 (163)
Q Consensus 128 ~-----------------~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~~~ 163 (163)
. .++++|||+.. .+.++++.+++.|+++++++++.+
T Consensus 330 ~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~~~ 383 (391)
T d1p3wa_ 330 ASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLS 383 (391)
T ss_dssp ---CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 1 03579999974 378999999999999999998753
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.0016 Score=48.33 Aligned_cols=132 Identities=10% Similarity=0.034 Sum_probs=79.9
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc-------ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR-------FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~-------~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
++-+|.+++ .+++.+.+..... .++.++++-.++.+.|+ +.+. .++.++.-+.++++.+ .|.+.
T Consensus 280 ~~p~~av~~-~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~-~~~~~~~g~~l~~~L~----~l~~~ 353 (429)
T d1s0aa_ 280 TMTLSATLT-TREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDW-QQQVADIEVQLREQLA----PARDA 353 (429)
T ss_dssp SSCCEEEEE-CHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHG----GGGGC
T ss_pred cccccchhh-HHHHHhccCCCCCcceeecCCCCCCcccchhhhccccccccccc-cchhhHHHHHHHHHHH----HhccC
Confidence 478899999 8999988865422 13456666665555553 3322 3333333333333322 12333
Q ss_pred -CCccccCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHH
Q 042816 76 -GIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIR 153 (163)
Q Consensus 76 -g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~ 153 (163)
.+.-.+..| +++-+++.... +...+...+++ +||.+.|. .+.+|++... ++++++++++++|.
T Consensus 354 ~~v~~vrg~G-l~~~~e~~~~~------~~~~~~~~~~~-~Gl~~~~~-------g~~i~~~Ppl~it~~eid~~~~~l~ 418 (429)
T d1s0aa_ 354 EMVADVRVLG-AIGVVETTHPV------NMAALQKFFVE-QGVWIRPF-------GKLIYLMPPYIILPQQLQRLTAAVN 418 (429)
T ss_dssp TTEEEEEEET-TEEEEEESSCB------CHHHHHHHHHH-TTEECCCB-------TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CceEEEeecc-cEEEEEecCcc------cHHHHHHHHHH-CCcEEEec-------CCEEEEeCCcCCCHHHHHHHHHHHH
Confidence 232223334 44555665432 56788888877 89998763 2578888532 48899999999999
Q ss_pred HHHHH
Q 042816 154 RISQT 158 (163)
Q Consensus 154 ~~~~~ 158 (163)
+++++
T Consensus 419 ~al~e 423 (429)
T d1s0aa_ 419 RAVQD 423 (429)
T ss_dssp HHTSS
T ss_pred HHHHh
Confidence 98765
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.10 E-value=0.0033 Score=45.36 Aligned_cols=118 Identities=13% Similarity=0.069 Sum_probs=60.5
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcc---ccCC--ceeEEEeecCCcccCCChhhH
Q 042816 31 SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GIEC---AKSN--GGFYCWADMSGLISSYSEKGE 104 (163)
Q Consensus 31 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~---~~~~--~g~~~~~~~~~~~~~~~~~~~ 104 (163)
+++...-.++..+|+.-. ++-++...+..++..+++.+.+... ++.. .++. ....+-+.++ +.
T Consensus 256 Tp~~~~i~al~~aL~~~~--~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~---------~~ 324 (382)
T d2bkwa1 256 TPPVQLINSLDVALKEIL--EEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVA---------DP 324 (382)
T ss_dssp CCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECS---------CH
T ss_pred CCcHHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCC---------CH
Confidence 344444444444443210 1223444555566677777776654 3222 2211 1111234455 35
Q ss_pred HHHHHHHHHhcCeEEcCCCCCCCCCCceEEEE-EecC-ChhHHHHHHHHHHHHHHHhhh
Q 042816 105 LELWDKLLNVAKVNVTPGSSCHCIEPGWFSFS-FTLL-TEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 105 ~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~-~~~~-~~~~l~~~~~~l~~~~~~~~~ 161 (163)
.++.+.| +++||.+.+|..-. .+.+.+||+ ++.. ..++++..++.|..+.+.|++
T Consensus 325 ~~~~~~L-~~~gi~i~~G~~~~-~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~~ 381 (382)
T d2bkwa1 325 PDVIAFL-KSHGVVIAGGIHKD-IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 381 (382)
T ss_dssp HHHHHHH-HHTTEECBCCCCTT-TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-HHCCeEEECCCChh-hcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHCc
Confidence 6777766 45999999885321 236789999 5532 345555555555544444543
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.08 E-value=0.0054 Score=45.82 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=84.2
Q ss_pred CCceeEEEEEecCH---------------HHHHHHHHhhcc-c-CCChHHHHHH-HHhc---CChHHHHHHHHHHHHHHH
Q 042816 4 LPGFRISVIYSYNN---------------SVLAAAKKLARF-S-SVSAPSQNLL-VSML---SDTKFVQKFININRERLR 62 (163)
Q Consensus 4 ~~G~RiG~~i~~~~---------------~~~~~~~~~~~~-~-~~s~~~q~~~-~~~l---~~~~~~~~~~~~~~~~~~ 62 (163)
++|=|-|.|.+ ++ ++.+.+.+.--+ . +...+.+.++ +.++ ..+++ . ...+...
T Consensus 245 lrGPrgGiI~~-~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~f-k----~Ya~qvv 318 (470)
T d1rv3a_ 245 LRGCRAGMIFY-RRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEF-K----EYQRQVV 318 (470)
T ss_dssp GCCCSCEEEEE-ECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHH-H----HHHHHHH
T ss_pred ccCCcceEEEE-ccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHH-H----HHHHHHH
Confidence 57888899888 43 377777666543 2 2223333211 1122 22333 3 4444555
Q ss_pred HHHHHHHHHhhhcCCcccc-CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc----CCCCCCCCCCceEEEEE
Q 042816 63 RLYVKFVAGLRQLGIECAK-SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT----PGSSCHCIEPGWFSFSF 137 (163)
Q Consensus 63 ~~~~~l~~~l~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----pg~~f~~~~~~~iRi~~ 137 (163)
.+.+.|.+.|.+.|+++.. ..-+-.+++++.... .+..+..+ ++++.||.+. |++. ....+..+||..
T Consensus 319 ~NAk~La~~L~~~G~~v~~ggTdnHlvlvdl~~~g-----~~g~~ae~-~Le~~gI~~Nkn~iP~D~-~~~~~sGiRiGT 391 (470)
T d1rv3a_ 319 ANCRALSAALVELGYKIVTGGSDNHLILVDLRSKG-----TDGGRAEK-VLEACSIACNKNTCPGDK-SALRPSGLRLGT 391 (470)
T ss_dssp HHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGT-----CCHHHHHH-HHHHTTEECEEECCSSCS-CTTSCCEEEEEC
T ss_pred HHHHHHHHHHHhCCceeccCCCCCceEEEeecccC-----CcHHHHHH-HHHHcCcEECCCcCCCCC-CCCCCCeeEecC
Confidence 6888999999999987763 344456778885421 14455555 4566899875 5442 122267899998
Q ss_pred ec-----CChhHHHHHHHHHHHHHH
Q 042816 138 TL-----LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 138 ~~-----~~~~~l~~~~~~l~~~~~ 157 (163)
.. ..++++++..+.|.++++
T Consensus 392 ~alTtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 392 PALTSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 64 456777777777776663
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.03 E-value=0.032 Score=40.84 Aligned_cols=149 Identities=11% Similarity=0.163 Sum_probs=78.7
Q ss_pred eEEEEEecCHHHHHHHHHhhcccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCccc-cC
Q 042816 8 RISVIYSYNNSVLAAAKKLARFSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQ----LGIECA-KS 82 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~g~~~~-~~ 82 (163)
-.|+++..++++.+.+...........+.......+..-+ ..-.....+...++.+++.+.|.+ .|..+. .+
T Consensus 269 g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~ 345 (445)
T d3bc8a1 269 GGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG---CSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTP 345 (445)
T ss_dssp SCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCT
T ss_pred CCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHh---hhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCC
Confidence 4566767578888877766554444443333222222111 122233333444445555555543 354433 23
Q ss_pred CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEc----CCC----------CCCC----CCCceEEEEEec-CChh
Q 042816 83 NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVT----PGS----------SCHC----IEPGWFSFSFTL-LTEK 143 (163)
Q Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~----pg~----------~f~~----~~~~~iRi~~~~-~~~~ 143 (163)
......++.+........ .+...+...|.+ .||... ++. .|+. ....++|++++. .+++
T Consensus 346 ~~~~~~~~~l~~~~~~~~-~~~~~l~~~L~~-~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~e 423 (445)
T d3bc8a1 346 HNPISLAMTLKTIDGHHD-KAVTQLGSMLFT-RQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQ 423 (445)
T ss_dssp TCSSEEEEECTTTSSSSS-CHHHHHHHHHHH-TTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHH
T ss_pred CCCcceEEEeeeccccCC-CCHHHHHHHHHH-cCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHH
Confidence 444444544433211111 256677777765 676321 111 1111 114579998764 3778
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 042816 144 DIHVVMERIRRISQTCKS 161 (163)
Q Consensus 144 ~l~~~~~~l~~~~~~~~~ 161 (163)
+++..++.|.++++++++
T Consensus 424 DID~~v~~L~kilk~~rk 441 (445)
T d3bc8a1 424 DVDLFIKRLDKCLNIVRK 441 (445)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998875
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=97.00 E-value=0.0023 Score=48.07 Aligned_cols=100 Identities=12% Similarity=-0.016 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCceeE--EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC
Q 042816 51 QKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFY--CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI 128 (163)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~ 128 (163)
.+=+++.-+...++..++.+.|+..|+++.. ++.|| +.++++..+ +..++.+.|++ +|+.- |...|...
T Consensus 338 ~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~-~~~ff~EFvv~~~~~~------~~~~i~k~L~~-~G~~~-~~~~~p~~ 408 (471)
T d1wyub1 338 LEGLKKAAALAVLNARYLKELLKEKGYRVPY-DGPSMHEFVAQPPEGF------RALDLAKGLLE-LGFHP-PTVYFPLI 408 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCBCSS-CSSCCSCEEEBCSTTC------CHHHHHHHHHH-TTCCC-CEESCSTT
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCceecc-CcceeeEEeecCCCCC------CHHHHHHHHHH-cCCCC-CcccCcCC
Confidence 4456788888889999999999777888753 34343 345666543 67889999987 88853 33344434
Q ss_pred CCceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 129 EPGWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 129 ~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
.++.+-|++.- .+.++++..++.|++++++.
T Consensus 409 ~~~~llv~vTE~~tkedID~lv~aL~~i~~e~ 440 (471)
T d1wyub1 409 VKEALMVEPTETEAKETLEAFAEAMGALLKKP 440 (471)
T ss_dssp STTCEEECCCTTSCHHHHHHHHHHHHHHHTSC
T ss_pred CCCeEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 46788898864 37889999999999988754
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.97 E-value=0.00052 Score=49.20 Aligned_cols=146 Identities=16% Similarity=0.190 Sum_probs=74.1
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHhhcc--------c--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 042816 2 LSLPGFRISVIYSYNNSVLAAAKKLARF--------S--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAG 71 (163)
Q Consensus 2 ~~~~G~RiG~~i~~~~~~~~~~~~~~~~--------~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (163)
|+.|| ++||+++ ++++++.+...... . ........++...+.. +.++++...+.+ ++.+++.+.
T Consensus 204 ~~~~g-~~g~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~-~~~~~~~~~ 277 (364)
T d2e7ja1 204 MAASG-PIGVMGM-KEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPH---VRERIKRWDEEV-EKARRFAAE 277 (364)
T ss_dssp SSCCS-SCEEEEE-CTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHH---HHHHGGGHHHHH-HHHHHHHHH
T ss_pred cCCCC-CEEEEEE-CHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHHHHH
Confidence 56677 7999999 77776655433221 0 1122222222222221 134444444444 355567778
Q ss_pred hhhcCCcccc--CCceeEEEeecCCcc--cCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEecCChhHHHH
Q 042816 72 LRQLGIECAK--SNGGFYCWADMSGLI--SSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHV 147 (163)
Q Consensus 72 l~~~g~~~~~--~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~~l~~ 147 (163)
+++.|+.... |......+...+... ..........+...+. ..++.... .+ ....+|++.-..++++++.
T Consensus 278 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~---~g--~~~~~~~~~~~~t~edid~ 351 (364)
T d2e7ja1 278 MEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELK-SRKIHGIK---PG--LTRYFKLSTYGLSDEEVDY 351 (364)
T ss_dssp HHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHH-HTTEECSC---TT--CCSEEEEECTTCCHHHHHH
T ss_pred HHHcCCeecCCCCCCcceEEEeccchHHHHHHhhccchHHHHHHH-hcCCceec---CC--CcceEEEeccCCCHHHHHH
Confidence 8887765532 223223333333210 0000001122333343 36665321 11 1456777653348899999
Q ss_pred HHHHHHHHHHHh
Q 042816 148 VMERIRRISQTC 159 (163)
Q Consensus 148 ~~~~l~~~~~~~ 159 (163)
+++.|+++++++
T Consensus 352 ~~~~l~ei~~~y 363 (364)
T d2e7ja1 352 VLNAFKEIIEKY 363 (364)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=96.96 E-value=0.011 Score=42.65 Aligned_cols=83 Identities=16% Similarity=0.191 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhhhc-CCccccCC-----ceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceE
Q 042816 60 RLRRLYVKFVAGLRQL-GIECAKSN-----GGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWF 133 (163)
Q Consensus 60 ~~~~~~~~l~~~l~~~-g~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~i 133 (163)
........+.+.+... |+++..|. +|+ +.+.++ ++.++.+.|.+ +||.+.- . .++.+
T Consensus 311 ~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~-vsf~~~---------~~~~v~~~L~~-~gi~~~~----r--~~~~l 373 (404)
T d1qz9a_ 311 ALTDLFIELVEQRCAAHELTLVTPREHAKRGSH-VSFEHP---------EGYAVIQALID-RGVIGDY----R--EPRIM 373 (404)
T ss_dssp HHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSE-EEEECT---------THHHHHHHHHT-TTEECEE----E--TTTEE
T ss_pred HhHHHHHHHHHhhccCCCEEEECCCCccceeeE-EEEecC---------CHHHHHHHHHH-CCCEEee----c--CCCeE
Confidence 3333333344444444 67665432 343 344555 46778887765 8997531 1 25789
Q ss_pred EEEEec--CChhHHHHHHHHHHHHHHHh
Q 042816 134 SFSFTL--LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 134 Ri~~~~--~~~~~l~~~~~~l~~~~~~~ 159 (163)
|||++. .+.++++.+++.|++++++-
T Consensus 374 RiS~~h~ynt~~did~~~~~L~~vl~~~ 401 (404)
T d1qz9a_ 374 RFGFTPLYTTFTEVWDAVQILGEILDRK 401 (404)
T ss_dssp EEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 999972 48899999999999999863
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=96.86 E-value=0.014 Score=43.05 Aligned_cols=144 Identities=10% Similarity=0.106 Sum_probs=75.6
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc----ccCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR----FSSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLGI- 77 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~----~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~- 77 (163)
|+-+|-+++ .+++.+....-.. .++.++++-.++.+.++ ++.. .++..++-+.+ .+.+.+.++++.+
T Consensus 275 G~p~~av~~-~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~-~~~~~~~g~~l---~~~l~~~~~~~~~i 349 (431)
T d1zoda1 275 GLPLAAIVT-SAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGL-VARANVMGDRL---RRGLLDLMERFDCI 349 (431)
T ss_dssp TSSCEEEEE-CHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHH---HHHHHHHHHHCTTE
T ss_pred ccccceeee-eecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhh-hHHHHHHHHHH---hhhhhhhhhcCCCe
Confidence 455677777 7777776654332 13566666555555543 2221 22233333333 3333444444432
Q ss_pred ccccCCceeEEEeecCC--cccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHH
Q 042816 78 ECAKSNGGFYCWADMSG--LISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRR 154 (163)
Q Consensus 78 ~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~ 154 (163)
.-....|.+ +-+++.. ....+...-...+.+.+++ +|+.+..-. .....+.+|++.+. ++++++++++++|.+
T Consensus 350 ~~vrG~Glm-~~ie~~~~~~~~~~~~~~~~~i~~~~~~-~Gl~~~~~~--~~~~~~~i~l~Ppl~it~~eid~~~~~l~~ 425 (431)
T d1zoda1 350 GDVRGRGLL-LGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQ--LPGMGGVFRIAPPLTVSEDEIDLGLSLLGQ 425 (431)
T ss_dssp EEEEEETTE-EEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEEC--CTTSCCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEeecceE-EEEEEecCCcccCccHHHHHHHHHHHHH-hCcccCeee--ecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 222334433 3333321 1111111135677888876 888642211 11125678888653 488999999999999
Q ss_pred HHHH
Q 042816 155 ISQT 158 (163)
Q Consensus 155 ~~~~ 158 (163)
++++
T Consensus 426 al~~ 429 (431)
T d1zoda1 426 AIER 429 (431)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=96.72 E-value=0.038 Score=38.80 Aligned_cols=94 Identities=6% Similarity=-0.006 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC---CccccC-CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCC
Q 042816 55 NINRERLRRLYVKFVAGLRQLG---IECAKS-NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEP 130 (163)
Q Consensus 55 ~~~~~~~~~~~~~l~~~l~~~g---~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~ 130 (163)
+...+...+...++.+.+...+ +...+. .....+-+.+|+.. +..++...|. ++||.+..|..- -
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~------~~~~~~~~l~-~~Gi~~~~G~~~----~ 329 (360)
T d1bjna_ 261 AEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSA------LDKLFLEESF-AAGLHALKGHRV----V 329 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGG------GHHHHHHHHH-HTTEECCBCCTT----T
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCCcc------cHHHHHHHHH-HCCCEeecCCCc----c
Confidence 3444444445555555555542 111111 11123445666543 6678888765 499999887421 1
Q ss_pred ceEEEEEec-CChhHHHHHHHHHHHHHHHh
Q 042816 131 GWFSFSFTL-LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 131 ~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~ 159 (163)
+.+|||+.. .+.|+++..++.|+++.+++
T Consensus 330 g~~Ris~~~~~t~edV~~li~~l~e~~~~~ 359 (360)
T d1bjna_ 330 GGMRASIYNAMPLEGVKALTDFMVEFERRH 359 (360)
T ss_dssp CSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHHHHHc
Confidence 349999954 47899999999999877654
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.72 E-value=0.0026 Score=46.81 Aligned_cols=134 Identities=13% Similarity=0.187 Sum_probs=80.0
Q ss_pred eeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCcccc
Q 042816 7 FRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL---GIECAK 81 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---g~~~~~ 81 (163)
+-+|.+++ ++++.+.+...... ++.++++-.++.+.|+.- ++ +...+...+.-+++.+.|+++ .+.-.+
T Consensus 264 ~p~~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i---~~--~~l~~~~~~~g~~l~~~l~~l~~~~i~~vR 337 (404)
T d2byla1 264 YPVSAVLC-DDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVL---EE--ENLAENADKLGIILRNELMKLPSDVVTAVR 337 (404)
T ss_dssp SCCEEEEE-CHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHTSCTTTEEEEE
T ss_pred ccceeeee-chhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHH---Hh--cCchhhhhHhhHHHHHHHHhhccccceeee
Confidence 67899999 88887766543322 355677766666665531 11 122333334445555555554 122222
Q ss_pred CCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHH
Q 042816 82 SNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
..| ++.-+++...- ......+.+.+++ +||++.|. + .+.+|++... ++++++++++++|.+++.+
T Consensus 338 g~G-l~~~i~~~~~~----~~~~~~~~~~l~~-~Gvl~~~~---~---~~~i~l~PpL~it~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 338 GKG-LLNAIVIKETK----DWDAWKVCLRLRD-NGLLAKPT---H---GDIIRFAPPLVIKEDELRESIEIINKTILS 403 (404)
T ss_dssp EET-TEEEEEECCCS----SCCHHHHHHHHHH-TTEECEEE---E---TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred ecc-cEEEEEEecCC----chhHHHHHHHHHh-CCeEEecC---C---CCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence 333 33334443210 0256778888887 89998762 1 4678888542 4889999999999998875
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=96.64 E-value=0.033 Score=39.56 Aligned_cols=61 Identities=8% Similarity=-0.024 Sum_probs=43.6
Q ss_pred EEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHH
Q 042816 87 YCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
-+.+.+++.. +..++.+.|. ++||.+.+|.. .. +.+||++.. .+.|++++.++.|+++.++
T Consensus 298 ~~~~~~~~~~------~~~~~~~~L~-~~GI~~~~G~~--~~--g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 298 NITFRLASEE------LEKEFVKASE-QEGFVGLKGHR--SV--GGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp EEEEECSCHH------HHHHHHHHHH-HTTEESCBCCT--TT--CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCcc------cHHHHHHHHH-HCCCEEecCCC--cC--CeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 3555666543 6678887665 59999999843 21 249999964 4889999888888886654
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=96.62 E-value=0.013 Score=43.47 Aligned_cols=95 Identities=12% Similarity=0.013 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-CCccccCCceeE-EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCC
Q 042816 52 KFININRERLRRLYVKFVAGLRQL-GIECAKSNGGFY-CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE 129 (163)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~ 129 (163)
+=+++.-+.-..+.+++.+.|.++ |++...+...|. +.++++. +..++.+.|++ +|+... -..|....
T Consensus 340 ~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~~--------~~~~i~k~L~d-~G~~~~-~~~~~~~~ 409 (437)
T d1wyua1 340 EGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPK--------DPEAVRRALAE-RGFHGA-TPVPREYG 409 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSS--------CHHHHHHHHHH-TTCCCC-EECCTTSC
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECCC--------CHHHHHHHHHh-CCCCCC-cccccCCC
Confidence 336777888888999999999988 887654443333 3455554 67889999987 898631 11122223
Q ss_pred CceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 130 PGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 130 ~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
++.+.|++.. .+.++++..++.|++++
T Consensus 410 ~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 410 ENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 6889999863 37788888888887763
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=96.39 E-value=0.025 Score=40.40 Aligned_cols=95 Identities=20% Similarity=0.233 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCccc----cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCC--
Q 042816 55 NINRERLRRLYVKFVAGLRQLGIECA----KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCI-- 128 (163)
Q Consensus 55 ~~~~~~~~~~~~~l~~~l~~~g~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~-- 128 (163)
............++.+.|...+.... ...... +-..++. .+..++...| +++||.+++|..+...
T Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~L-~~~gI~vr~G~~c~~~~~ 329 (376)
T d1eg5a_ 259 SEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNT-LSVSFPN-------IRGSTLQNLL-SGYGIYVSTSSACTSKDE 329 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTE-EEEECTT-------CCHHHHHHHH-HHTTEECBC---------
T ss_pred hhhhhhhhhhhhhhccccccccccccccccccccce-eeeccCC-------CCHHHHHHHH-hhCCeEEeCcchhcCCcc
Confidence 34444555556666776666522111 111221 2223333 2567777765 4599999988654211
Q ss_pred ---------------CCceEEEEEec-CChhHHHHHHHHHHHHHHH
Q 042816 129 ---------------EPGWFSFSFTL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 129 ---------------~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
.++++|+|+.. .+.++++.+++.|.+++.-
T Consensus 330 ~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~~ 375 (376)
T d1eg5a_ 330 RLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSF 375 (376)
T ss_dssp ---CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 03579999874 3789999999999998764
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.96 E-value=0.02 Score=42.62 Aligned_cols=113 Identities=15% Similarity=0.092 Sum_probs=64.3
Q ss_pred cCCChHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCceeEEEeecCCcccCCChhhHHH
Q 042816 30 SSVSAPSQNLLVSMLS---DTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELE 106 (163)
Q Consensus 30 ~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 106 (163)
++.++++-.++.+.|+ +... -++.++.-+.+.++.+.+.+.... .+.-.+.. |+++-++++.. ....+
T Consensus 344 ~~g~p~~~aaa~a~l~~i~~~~l-~~~~~~~g~~l~~~l~~l~~~~~~-~i~~vrG~-Gl~~~ie~~~~------~~~~~ 414 (461)
T d1ohwa_ 344 WLGDPSKNLLLAEVINIIKREDL-LSNAAHAGKVLLTGLLDLQARYPQ-FISRVRGR-GTFCSFDTPDE------SIRNK 414 (461)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHCTT-TCEEEEEE-TTEEEEECSSH------HHHHH
T ss_pred cccccccchhhcccchhhhhhhH-HHHHHHHHHHHHHHHHHHHhhCCC-ceEEeeee-eEEEEEEcCCH------HHHHH
Confidence 3456666555555554 2221 233333333333333333222111 12222233 44556777653 24567
Q ss_pred HHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHH
Q 042816 107 LWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQT 158 (163)
Q Consensus 107 ~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~ 158 (163)
+...+++ +||.+.+.. ++.|||.-.. +++++++.++++|.+++.+
T Consensus 415 i~~~~~~-~Gll~~~~~------~~~ir~~PpL~it~~eid~~~~~l~~~l~e 460 (461)
T d1ohwa_ 415 LISIARN-KGVMLGGCG------DKSIRFRPTLVFRDHHAHLFLNIFSDILAD 460 (461)
T ss_dssp HHHHHHH-TTEECEEET------TTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-CCeEEeeCC------CCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence 8888877 899987731 4678887532 4889999999999999875
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=95.63 E-value=0.049 Score=40.31 Aligned_cols=108 Identities=7% Similarity=-0.030 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-CCcccc---CCcee-EEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCC
Q 042816 52 KFININRERLRRLYVKFVAGLRQL-GIECAK---SNGGF-YCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCH 126 (163)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~---~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~ 126 (163)
+-+++..+...+..+++.+.|++. ++++.. |..+. .+..++.... ..+ .+..++...|.+ .|..|.. ..+.
T Consensus 335 ~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~-~~~-~~~~~l~~~L~~-~Gw~v~~-~~~p 410 (450)
T d1pmma_ 335 EGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE-DPG-YTLYDLSERLRL-RGWQVPA-FTLG 410 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTC-CCS-SCHHHHHHHHHT-TTCBCCE-EECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcc-cCC-CCHHHHHHHHHH-cCCeeec-cCcC
Confidence 335677777788899999999998 566643 22222 2233443210 011 256788887765 8876532 1111
Q ss_pred --CCCCceEEEEEec-CChhHHHHHHHHHHHHHHHhhhcC
Q 042816 127 --CIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKSHS 163 (163)
Q Consensus 127 --~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~~~ 163 (163)
......+|+.+.. .+.+.++..++.|+++++++++|+
T Consensus 411 ~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~~p 450 (450)
T d1pmma_ 411 GEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 450 (450)
T ss_dssp TTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 1225689999965 377889999999999999999886
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.2 Score=36.76 Aligned_cols=97 Identities=12% Similarity=0.201 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhhcCCccccCCceeEEEe-e--cCCcccCCChhhHHHHHHHHHHhcCeEEcCC----------CCCC-C
Q 042816 62 RRLYVKFVAGLRQLGIECAKSNGGFYCWA-D--MSGLISSYSEKGELELWDKLLNVAKVNVTPG----------SSCH-C 127 (163)
Q Consensus 62 ~~~~~~l~~~l~~~g~~~~~~~~g~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg----------~~f~-~ 127 (163)
.++.+++.+.|.+.+..+.++.+...++- . ++.. ....+ ....+...++.+.||..... .... .
T Consensus 331 ~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~ 408 (467)
T d2v1pa1 331 IAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHI-PADQF-PAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLP 408 (467)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSSCEEEEHHHHSTTS-CGGGC-HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCC
T ss_pred HHHHHHHHHHHHhcCCcccCCCccceeecchhhcCCc-chhhh-hhHHHHHHHHHHcCCeeecccccccccccccCCccC
Confidence 45678888888888766655443332221 1 1211 11111 34555666666688864321 1110 1
Q ss_pred CCCceEEEEEec--CChhHHHHHHHHHHHHHHHhh
Q 042816 128 IEPGWFSFSFTL--LTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 128 ~~~~~iRi~~~~--~~~~~l~~~~~~l~~~~~~~~ 160 (163)
...+.+|+++.. .+.|+++..++.|.++.++..
T Consensus 409 ~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~~~ 443 (467)
T d2v1pa1 409 CPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp CSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred CCcceEEEecCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 226789998753 377999999999999887543
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=95.31 E-value=0.047 Score=39.58 Aligned_cols=130 Identities=16% Similarity=0.131 Sum_probs=74.2
Q ss_pred ceeEEEEEecCHHHHHHHHHhhc--ccCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---Cccc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLAR--FSSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLG---IECA 80 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g---~~~~ 80 (163)
|+-+|-++. .+++.+.+..... .++.++++..++.+.|+.- ++ +...+...+.-+++.+.|+++. +.-.
T Consensus 251 G~~~~~~~~-~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l---~~--~~~~~~v~~~g~~l~~~L~~l~~~~v~~v 324 (387)
T d1vefa1 251 GVPLGVAVM-REEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYL---ER--TRLWERAAELGPWFMEKLRAIPSPKIREV 324 (387)
T ss_dssp TSSCEEEEE-EHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHH---HH--HTTHHHHHHHHHHHHHHHHTSCCTTEEEE
T ss_pred Ccccccccc-ceeeeeccccCCccccCCCCcchhhhcccchhhc---cc--ccccchHhhhhHHHHHHHHhcCCCceEEE
Confidence 455666677 6666655533322 1456777777666665432 11 2223344444555666666541 2212
Q ss_pred cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 81 KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
+.. |++.-+++... ....+.+.+.+ +|+.+.+. +++.+|++.+. ++++++++++++|++++
T Consensus 325 rg~-Gl~~~ie~~~~-------~~~~~~~~~~~-~g~l~~~~------g~~~ir~~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 325 RGM-GLMVGLELKEK-------AAPYIARLEKE-HRVLALQA------GPTVIRFLPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp EEE-TTEEEEEESSC-------SHHHHHHHHHH-HCEECEES------STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred eec-ceEEEEEEeCC-------chHHHHHHHHH-CCCeEEec------CCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence 222 44555677653 34555555554 78876642 24678888543 58899999999999876
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.14 E-value=0.066 Score=39.92 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-CCccc-cCCceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCC
Q 042816 52 KFININRERLRRLYVKFVAGLRQL-GIECA-KSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIE 129 (163)
Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~ 129 (163)
+-+++..+..-+..+++.+.+++. ++++. +|+-+..+ +++... + .-...+.+.|.++..+.+.+... .+
T Consensus 372 ~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~-Fr~~~~----d-~~n~~l~~~l~~~G~~~~s~t~~---~g 442 (476)
T d1js3a_ 372 KGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVC-FRLKGS----D-GLNEALLERINSARKIHLVPCRL---RG 442 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEE-EEESSC----H-HHHHHHHHHHHHHTSCBCEEEEE---TT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEEEE-EEccCC----h-HHHHHHHHHHHhcCCEEEeeeeE---CC
Confidence 334666666777889999999998 78776 45555433 344321 0 12356777777644465554321 23
Q ss_pred CceEEEEEec--CChhHHHHHHHHHHHHHHHh
Q 042816 130 PGWFSFSFTL--LTEKDIHVVMERIRRISQTC 159 (163)
Q Consensus 130 ~~~iRi~~~~--~~~~~l~~~~~~l~~~~~~~ 159 (163)
..++|+++.. .++++++.+++.|++..+++
T Consensus 443 ~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~l 474 (476)
T d1js3a_ 443 QFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474 (476)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5699999874 25678999999999988775
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=94.72 E-value=0.41 Score=33.39 Aligned_cols=59 Identities=8% Similarity=-0.068 Sum_probs=40.5
Q ss_pred EEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHH
Q 042816 88 CWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQ 157 (163)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~ 157 (163)
+.+.++... +..++...|.+ +||.+..|.... +.+|+|+-. .+.|++++.++.|.++.+
T Consensus 299 vsf~i~~~~------~~~~~~~~l~~-~GI~~~~G~~~~----ggiRiS~~~~~t~e~V~~Li~~~~~~~~ 358 (360)
T d1w23a_ 299 VTFNLRNEE------LNQQFLAKAKE-QGFVGLNGHRSV----GGCRASIYNAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp EEEECSSHH------HHHHHHHHHHH-TTEESCBCCTTT----CSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCc------cHHHHHHHHHH-CCCeeeeCCCcc----CcEEEEeeCCCCHHHHHHHHHHHHHHHh
Confidence 445666532 56788887655 999998885432 249999843 377888877777776654
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=93.96 E-value=0.72 Score=33.19 Aligned_cols=61 Identities=18% Similarity=0.033 Sum_probs=40.7
Q ss_pred eEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 8 RISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
=.|.++..++++.+.+...... ...+++....+..-|+.- . -..+...++...+.+.|+++
T Consensus 205 ~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~TL---~----lRm~~~~~nA~~lA~~L~~h 267 (384)
T d1cs1a_ 205 VAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTL---V----PRMELAQRNAQAIVKYLQTQ 267 (384)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTH---H----HHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccchh---H----HHHHHHHHHHHHHHHhcccC
Confidence 3577777677777777766654 356777776777777763 2 23334456788888999887
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=92.84 E-value=1.1 Score=32.16 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=39.3
Q ss_pred eEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 8 RISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
=.|.++. ++++.+.+...... ..+++.....+..-++.- ....+...++...+.+.|+++
T Consensus 215 lgG~vv~-~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~TL-------~lR~~~~~~nA~~vA~~L~~h 276 (391)
T d1cl1a_ 215 MIGTAVC-NARCWEQLRENAYLMGQMVDADTAYITSRGLRTL-------GVRLRQHHESSLKVAEWLAEH 276 (391)
T ss_dssp CCEEEEE-CTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHTC
T ss_pred cccceec-cccccccchhhhhcccccCCchhhhhhhccchhH-------HHHHHHHHHHHHHHHHHHHhc
Confidence 3577777 77777777666553 356666666666666663 233334556788888899887
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.07 E-value=1.4 Score=31.49 Aligned_cols=61 Identities=10% Similarity=-0.023 Sum_probs=41.8
Q ss_pred eEEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 8 RISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
=.|.++..++++.+.+....... .+++.....+..-+++- ....+...++...+.+.|+++
T Consensus 203 ~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl-------~lRm~~~~~nA~~lA~~L~~h 265 (380)
T d1ibja_ 203 MAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM-------ALRIEKQQENARKIAMYLSSH 265 (380)
T ss_dssp CCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHTC
T ss_pred cccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchhh-------hhhHHHHHHHHHHHHHHHHhC
Confidence 35777775677888887776643 56777777777777764 233344455778888889887
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=91.76 E-value=1.6 Score=31.44 Aligned_cols=59 Identities=7% Similarity=0.134 Sum_probs=40.9
Q ss_pred EEEEEecCHHHHHHHHHhhccc--CCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 9 ISVIYSYNNSVLAAAKKLARFS--SVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 9 iG~~i~~~~~~~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
.|.++. ++++.+.+......+ ..++.....+..-++.- ....+...++...+.+.|+++
T Consensus 224 ~G~v~~-~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~TL-------~lRm~~~~~nA~~lA~~L~~h 284 (398)
T d1qgna_ 224 AGCISG-PLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTL-------HLRVQQQNSTALRMAEILEAH 284 (398)
T ss_dssp CEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGH-------HHHHHHHHHHHHHHHHHHHTC
T ss_pred ehhhcc-hhhhhhhhhhhcccCCCcCCHHHHHHHHhcchHH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 466777 899988888777653 46666666676766653 333444556788888888887
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=88.51 E-value=3.2 Score=29.87 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhcCeEEcCCCCCCCCCCceEEEEEec-CChhHHHHHHHHHHHHHHHhhh
Q 042816 103 GELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTL-LTEKDIHVVMERIRRISQTCKS 161 (163)
Q Consensus 103 ~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~~l~~~~~~l~~~~~~~~~ 161 (163)
+...+.+.|. ++||.+.- .+.+++|++++. .++++++..++.|.++.+.+.+
T Consensus 409 ~~~~~~~~L~-~~gI~~e~------~~~~~i~~~~s~~~T~edid~li~aL~ei~r~~~~ 461 (462)
T d1c4ka2 409 PATIVANYLR-DHGIIPEK------SDLNSILFLMTPAETPAKMNNLITQLLQLQRLIEE 461 (462)
T ss_dssp CHHHHHHHHH-HTTCCCSE------ECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHH-HcCCeeec------cCCCeEEEEecCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 4567777665 48986531 126789999875 4788999999999988777654
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=88.01 E-value=3.4 Score=29.62 Aligned_cols=60 Identities=17% Similarity=0.090 Sum_probs=38.5
Q ss_pred eEEEEEecCHHHHHHHH--Hhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 8 RISVIYSYNNSVLAAAK--KLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 8 RiG~~i~~~~~~~~~~~--~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
=.|.+++ +++.+...+ ..... ..+++.....+..-|+.- ....+...++...+.+.|+++
T Consensus 218 l~G~v~~-~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~TL-------~lRm~~~~~nA~~lA~~L~~h 281 (397)
T d1y4ia1 218 IGGIIVG-KQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTL-------GIRMERHCENALKIARFLEGH 281 (397)
T ss_dssp CCEEEEE-CHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHTC
T ss_pred eeeccCC-CHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCcH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 3578888 787776543 33333 356777776777777763 233344556788888999887
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.30 E-value=4.3 Score=29.00 Aligned_cols=63 Identities=13% Similarity=-0.049 Sum_probs=40.2
Q ss_pred ceeEEEEEecCHHHHHHHHHhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 6 GFRISVIYSYNNSVLAAAKKLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 6 G~RiG~~i~~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
..=.|.++..++++.+.++..... ..+++.....+..-++.- .. ..+...++...+.+.|+++
T Consensus 210 Dv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~Tl---~l----R~~~~~~nA~~lA~~L~~~ 274 (393)
T d1n8pa_ 210 DVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTL---HL----RVRQAALSANKIAEFLAAD 274 (393)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH---HH----HHHHHHHHHHHHHHHHTSC
T ss_pred ccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCcch---hh----HHHHHHHHHHHHHHHHHhc
Confidence 345678777567788888877764 346777666676777764 22 2333444566777777654
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=85.25 E-value=4.9 Score=28.69 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=74.9
Q ss_pred eeEEEEEecCHHHHHHHHHh--hcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CC-ccc
Q 042816 7 FRISVIYSYNNSVLAAAKKL--ARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL-GI-ECA 80 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~~~--~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~-~~~ 80 (163)
.=.|.+++ +.+.....+.. ... ..+++.....+..-|+.- ....+...++...+.+.|+++ .+ ++.
T Consensus 214 v~~G~v~~-~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~TL-------~lRm~r~~~nA~~lA~~L~~hp~V~~V~ 285 (394)
T d1e5ea_ 214 VVAGLICG-KADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTL-------NIRMKAESENAMKVAEYLKSHPAVEKVY 285 (394)
T ss_dssp CCCEEEEE-CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred cccccccc-hhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchhH-------HHHHHHHHHHHHHHHHHHhhcCCccEEe
Confidence 34577888 77777665433 222 346777777777777763 333444556788899999887 43 222
Q ss_pred cC-----------------CceeEEEeecCCcccCCChhhHHHHHHHHHHhcCeEEcCCCCCCC----------------
Q 042816 81 KS-----------------NGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHC---------------- 127 (163)
Q Consensus 81 ~~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~---------------- 127 (163)
-| -||++.+ .+.. ..+-+..+++.-.+. ..+..++.
T Consensus 286 yPgl~s~p~~~~~~~~~~~~G~~~sf-~~~~---------~~~~a~~f~~~l~l~-~~a~SlGg~eSLi~~p~~~th~~~ 354 (394)
T d1e5ea_ 286 YPGFEDHEGHDIAKKQMRMYGSMITF-ILKS---------GFEGAKKLLDNLKLI-TLAVSLGGCESLIQHPASMTHAVV 354 (394)
T ss_dssp CTTCSSSTTHHHHHHHCSSCCSEEEE-EETT---------HHHHHHHHHHTCSSS-EESSCCCSSSCEEECGGGTTTTTS
T ss_pred CCCcccccchhhhhcccccCCCeeee-eccC---------CHHHHHHHHHhCCcc-ceeeccCCccceeECccccccccC
Confidence 21 2554444 3332 222233344433431 11212211
Q ss_pred ---------CCCceEEEEEecCChhHHHHHHHHHHHHHHHhh
Q 042816 128 ---------IEPGWFSFSFTLLTEKDIHVVMERIRRISQTCK 160 (163)
Q Consensus 128 ---------~~~~~iRi~~~~~~~~~l~~~~~~l~~~~~~~~ 160 (163)
..++.||+|++- |+.+..++-|.++++++.
T Consensus 355 ~~~~r~~~Gi~~~liRlSVGl---Ed~eDLi~Dl~qAl~~l~ 393 (394)
T d1e5ea_ 355 PKEEREAAGITDGMIRLSVGI---EDADELIADFKQGLDALL 393 (394)
T ss_dssp CHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhcCCCcCEEEEEecc---CCHHHHHHHHHHHHHHhh
Confidence 125689999997 667777788877777654
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=84.09 E-value=5.6 Score=28.39 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=39.6
Q ss_pred eeEEEEEecCHHHHHHHH--Hhhcc--cCCChHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042816 7 FRISVIYSYNNSVLAAAK--KLARF--SSVSAPSQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQL 75 (163)
Q Consensus 7 ~RiG~~i~~~~~~~~~~~--~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 75 (163)
.=.|.+++ +++.++.++ ..... ..+++.....+..-++.- ....+...++...+.+.|+++
T Consensus 213 ~~~G~v~~-~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~TL-------~lRm~~~~~nA~~lA~~L~~h 277 (392)
T d1gc0a_ 213 ITAGIVVG-SQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL-------NLRMDRHCANAQVLAEFLARQ 277 (392)
T ss_dssp CCCEEEEE-CHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHTC
T ss_pred cccccccc-hhHHHHHHHHHHHHHccCCcCChhhHHHHHhccccH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 44678888 787776654 33332 457777777777777763 233344455788888888887
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=80.90 E-value=6.6 Score=27.01 Aligned_cols=98 Identities=10% Similarity=0.066 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-CCccccCC----ceeEEEee-cCCcccCCChhhHHHHHHHHHHhcCeEEcCCCC----
Q 042816 55 NINRERLRRLYVKFVAGLRQL-GIECAKSN----GGFYCWAD-MSGLISSYSEKGELELWDKLLNVAKVNVTPGSS---- 124 (163)
Q Consensus 55 ~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~----~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~gi~v~pg~~---- 124 (163)
++..+..++..+++.+.|++. +.....+. ..++.++. ++... .+ .+-.++.+.|.+ +||.+.+...
T Consensus 252 ~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~Rd~l~~~L~~-~gI~~~~~y~~~~~ 327 (376)
T d1mdoa_ 252 DALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEAR--CG-ITRDALMASLKT-KGIGTGLHFRAAHT 327 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHH--HS-SCHHHHHHHHHH-TTBCCBCCCCCGGG
T ss_pred hHHHHHHhhhhhhhhhhccccccccccccccccccccccccccccccc--ch-hhHHHHHHHHHH-CCCCeeeECcchhc
Confidence 344445555667777777766 33222221 11222222 22100 00 022468887765 8998875421
Q ss_pred -------CCCCC--------CceEEEEEec-CChhHHHHHHHHHHHHH
Q 042816 125 -------CHCIE--------PGWFSFSFTL-LTEKDIHVVMERIRRIS 156 (163)
Q Consensus 125 -------f~~~~--------~~~iRi~~~~-~~~~~l~~~~~~l~~~~ 156 (163)
|.... .+.+.|-+.. ++.++++..++.|.+++
T Consensus 328 ~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 328 QKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp SHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 10000 2335443322 46788888888888764
|