Citrus Sinensis ID: 042861

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------

MAPSAAAADSSPPSSPETTENRLQPFFVLHEASSRKPERTSTGTVKTRKKIDFSPSKLKNVEKPDVEIAKEGGDEGYGNLRMDAFEVVWSKIESTIKDVLRDINANVFNEIHQWVRDSFSTIRSFGMLTFREATQAFPIVTDASSKQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQHFSMEPLSIILKGFFLEEDRQGLQDGLLLQAMFKHAFDLPSYGRNKMGEENVGSFAHCLSELKRSQTEWRTVVLCLYEAGKGDRIQLLDLLCEALNPALYSSRTS

ccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHccccccccccccccccccHHEEEccccccccHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHccHHHHHccccEEEEcccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccc

cccccccccccccccccccHccccEEEEEEcccccccccccccccccccEEEEcccccccccccccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccccccccccccccccccccccEEEEEEccccccccHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHccccccHccHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHccHHHHHHcccEEEEccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHcccccHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccc

mapsaaaadssppsspettenrlqpffvlheassrkpertstgtvktrkkidfspsklknvekpdveiakeggdegygnlrMDAFEVVWSKIESTIKDVLRDINANVFNEIHQWVRDSFSTIRSFGMLTFREAtqafpivtdasskqLFTGLVLTKNMEFVDDLLTFEELGRHLKSqgchvanlssldftaksgiGGCLRSLLRQFLVAPLDAADISILASWYReqgnynnpvvVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVtttldaprniLLSNVLQclcpcmftlgtpseRMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSqhfsmeplSIILKGFFLEEDRQGLQDGLLLQAMFKHafdlpsygrnkmgeenvgSFAHCLSELKRSQTEWRTVVLCLYEAGKGDRIQLLDLLCEAlnpalyssrts

mapsaaaadssppsspettenRLQPFfvlheassrkpertstgtvktrkkidfspsklknvekpdveiakeggdegygnlRMDAFEVVWSKIESTIKDVLRDINANVFNEIHQWVRDSFSTIRSFGMLTFREATQAFPIVTDASSKQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQHFSMEPLSIILKGFFLEEDRQGLQDGLLLQAMFKHAFDLPSYGRNKMGEENVGSFAHCLSELKRSQTEWRTVVLCLYEAGKGDRIQLLDLLCEAlnpalyssrts

MapsaaaadssppsspETTENRLQPFFVLHEASSRKPERTSTGTVKTRKKIDFSPSKLKNVEKPDVEIAKEGGDEGYGNLRMDAFEVVWSKIESTIKDVLRDINANVFNEIHQWVRDSFSTIRSFGMLTFREATQAFPIVTDASSKQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQHFSMEPLSIILKGFFLEEDRqglqdglllqAMFKHAFDLPSYGRNKMGEENVGSFAHCLSELKRSQTEWRTVVLCLYEAGKGDRIQLLDLLCEALNPALYSSRTS

***************************************************************************GYGNLRMDAFEVVWSKIESTIKDVLRDINANVFNEIHQWVRDSFSTIRSFGMLTFREATQAFPIVTDASSKQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQHFSMEPLSIILKGFFLEEDRQGLQDGLLLQAMFKHAFDLPSYGRNKMGEENVGSFAHCLSELKRSQTEWRTVVLCLYEAGKGDRIQLLDLLCEALNPAL******

************************PFF************************************************GYGNLRMDAFEVVWSKIESTIKDVLRDINANVFNEIHQWVRDSFSTIRSFGMLTFREATQAFPIVTDASSKQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLV*PLDAADISILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQHFSMEPLSIILKGFFLEEDRQGLQDGLLLQAMFKHAFDL***************FAHCLSELKRSQTEWRTVVLCLYEAGKGDRIQLLDLLCEALN*********

********************NRLQPFFVLHEA***************RKKIDFSPSKLKNVEKPDVEIAKEGGDEGYGNLRMDAFEVVWSKIESTIKDVLRDINANVFNEIHQWVRDSFSTIRSFGMLTFREATQAFPIVTDASSKQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQHFSMEPLSIILKGFFLEEDRQGLQDGLLLQAMFKHAFDLPSYGRNKMGEENVGSFAHCLSELKRSQTEWRTVVLCLYEAGKGDRIQLLDLLCEALNPALYSSRTS

********************NRLQPFFVLHEA*****************K*****S*******PDVEIAKEGGDEGYGNLRMDAFEVVWSKIESTIKDVLRDINANVFNEIHQWVRDSFSTIRSFGMLTFREATQAFPIVTDASSKQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQHFSMEPLSIILKGFFLEEDRQGLQDGLLLQAMFKHAFDLPSYGRNKMGEENVGSFAHCLSELKRSQTEWRTVVLCLYEAGKGDRIQLLDLLCEALNPAL******

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		457	2.2.26 [Sep-21-2011]
Q9UBD5		711	Origin recognition comple	yes	no	0.636	0.409	0.233	2e-16
Q5DJU3		713	Origin recognition comple	N/A	no	0.645	0.413	0.219	7e-15
Q32PJ3		712	Origin recognition comple	yes	no	0.582	0.373	0.225	4e-14
Q9JK30		715	Origin recognition comple	yes	no	0.617	0.394	0.233	6e-13
Q4R180		711	Origin recognition comple	yes	no	0.597	0.383	0.221	1e-12
Q55BR6		1080	Origin recognition comple	yes	no	0.284	0.120	0.236	0.0001

>sp\|Q9UBD5\|ORC3_HUMAN Origin recognition complex subunit 3 OS=Homo sapiens GN=ORC3 PE=1 SV=1	Back alignment and function desciption

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 155/351 (44%), Gaps = 60/351 (17%)

Query: 53  FSP-SKLKNVEKPDVEIAKEGGDEGY-GNLRMDAFEVVWSKIESTIKDVLRDINANVFNE 110
           F P SK + +  P  +   +G +E     LR + ++++W +++S  + +  ++N N+F+ 
Sbjct: 13  FKPNSKKRKISLPIEDYFNKGKNEPEDSKLRFETYQLIWQQMKSENERLQEELNKNLFDN 72

Query: 111 IHQWVRDSFSTIRSF-----GMLTFREATQAFPIVTDASSKQLFTGLVLTKNMEFVDDLL 165
           + ++++ S S  +       G +  RE   A               LVL  N+   D  L
Sbjct: 73  LIEFLQKSHSGFQKNSRDLGGQIKLREIPTA--------------ALVLGVNV--TDHDL 116

Query: 166 TFEELGRHLKSQGC-HVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAAD--------- 215
           TF  L   L++    +V +L + D      +   L+ L+ Q +   +D            
Sbjct: 117 TFGSLTEALQNNVTPYVVSLQAKDC---PDMKHFLQKLISQLMDCCVDIKSKEEESVHVT 173

Query: 216 -------ISILASWYREQGNYNNP-----------------VVVIVDDIERCCGSVLSDF 251
                  +  L+SWY       +P                 VVVI+ D+E     VL DF
Sbjct: 174 QRKTHYSMDSLSSWYMTVTQKTDPKMLSKKRTTSSQWQSPPVVVILKDMESFATKVLQDF 233

Query: 252 ILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAVL 311
           I++ S+ + + P+ILI G+ T+      +L   V   LC  +F   +  E +  +++ +L
Sbjct: 234 IIISSQHLHEFPLILIFGIATSPIIIHRLLPHAVSSLLCIELFQSLSCKEHLTTVLDKLL 293

Query: 312 VRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQHFSMEPLSII 362
           +     F I+ KV   + N F+  D ++ +FI+ L+++  +HF  +PLS++
Sbjct: 294 LTTQFPFKINEKVLQVLTNIFLYHDFSVQNFIKGLQLSLLEHFYSQPLSVL 344

Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.
Homo sapiens (taxid: 9606)

>sp\|Q5DJU3\|ORC3_SPECI Origin recognition complex subunit 3 OS=Spermophilus citellus GN=ORC3 PE=2 SV=1	Back alignment and function description

>sp\|Q32PJ3\|ORC3_BOVIN Origin recognition complex subunit 3 OS=Bos taurus GN=ORC3 PE=2 SV=1	Back alignment and function description

>sp\|Q9JK30\|ORC3_MOUSE Origin recognition complex subunit 3 OS=Mus musculus GN=Orc3 PE=1 SV=1	Back alignment and function description

>sp\|Q4R180\|ORC3_RAT Origin recognition complex subunit 3 OS=Rattus norvegicus GN=Orc3 PE=2 SV=1	Back alignment and function description

>sp\|Q55BR6\|ORC3_DICDI Origin recognition complex subunit 3 OS=Dictyostelium discoideum GN=orcC PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		457
255558117		715	origin recognition complex subunit, puta	0.984	0.629	0.647	1e-168
224126189		693	predicted protein [Populus trichocarpa]	0.943	0.621	0.659	1e-163
449451968		737	PREDICTED: origin recognition complex su	0.993	0.616	0.587	1e-146
449488713		562	PREDICTED: origin recognition complex su	0.993	0.807	0.580	1e-144
79514788		734	origin recognition complex subunit 3 [Ar	0.973	0.606	0.562	1e-143
356544321		736	PREDICTED: origin recognition complex su	0.997	0.619	0.555	1e-142
357492693		639	Origin recognition complex subunit [Medi	0.993	0.710	0.534	1e-141
297807693		741	ATORC3/ORC3 [Arabidopsis lyrata subsp. l	0.975	0.601	0.541	1e-140
297737264		4326	unnamed protein product [Vitis vinifera]	0.733	0.077	0.702	1e-136
9755721		556	putative protein [Arabidopsis thaliana]	0.842	0.692	0.494	1e-119

>gi\|255558117\|ref\|XP_002520087.1\| origin recognition complex subunit, putative [Ricinus communis] gi\|223540851\|gb\|EEF42411.1\| origin recognition complex subunit, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 299/462 (64%), Positives = 361/462 (78%), Gaps = 12/462 (2%)

Query: 1   MAPSAAAADSSPPSSPET--TENRLQPFFVLHEASS--RKPERTSTGTVKTRKKIDFSPS 56
           MAPSA A   + P+SP T  +EN LQPFFVL EA+S   K       T KTR++ID SPS
Sbjct: 1   MAPSATANSPNSPTSPPTDISENNLQPFFVLREATSSHNKSNERPNKTPKTRRRIDLSPS 60

Query: 57  KLKNVEKPDVEIAKEGGDEGYGNLRMDAFEVVWSKIESTIKDVLRDINANVFNEIHQWVR 116
           K K  EKP+     E  D  + + RM+AFE++WSKIESTIKDVLRD+N +VF+EI++W+R
Sbjct: 61  KNKETEKPE----GESDDHEFVHQRMEAFELIWSKIESTIKDVLRDLNTSVFDEIYRWIR 116

Query: 117 DSFSTIRSFGMLTFREATQAFPIVTDASSKQLFTGLVLTKNMEFVDDLLTFEELGRHLKS 176
           +SF++I+S G  +F EATQ+FP   D +SK+LFTGLVLTKN+EF DDLLTF+ELG HLKS
Sbjct: 117 ESFNSIKSCGEPSFLEATQSFPAAKDVTSKKLFTGLVLTKNLEFADDLLTFKELGLHLKS 176

Query: 177 QGCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILASWYREQGNYNNPVVVI 236
           QGC+VANLSSLDF+ K+GIGGCLRSLLRQ ++  LDA DISILA+WYREQG+  NPVV+I
Sbjct: 177 QGCYVANLSSLDFSVKNGIGGCLRSLLRQLVMVTLDAPDISILATWYREQGDCTNPVVII 236

Query: 237 VDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTL 296
           +DD+ERCCGSVLSDFI+M  EWVLKIPVILIMGV TTLDA RNIL +N+L  LCPC F  
Sbjct: 237 IDDLERCCGSVLSDFIIMLCEWVLKIPVILIMGVATTLDAVRNILPANMLHHLCPCKFIF 296

Query: 297 GTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQHFSM 356
           GT SERMDAI+EAVLV+QCSGFSI HKVAVF+RNYFV  DGT+TSFIRALKIAC+QHFSM
Sbjct: 297 GTLSERMDAIVEAVLVKQCSGFSIGHKVAVFLRNYFVSHDGTLTSFIRALKIACAQHFSM 356

Query: 357 EPLSIILKGFFLEEDRQGLQD---GLLLQAMFKHAFDLPSYGRNKMGEENVGSFAHCLSE 413
           EPLS +L  +FLEED + L     GL  + M KHAF+LPS  R KM E+N  +  H LSE
Sbjct: 357 EPLSFMLL-WFLEEDNKVLHGENYGLSPENMCKHAFELPSCLRKKMVEQNGDTLVHGLSE 415

Query: 414 LKRSQTEWRTVVLCLYEAGKGDRIQLLDLLCEALNPALYSSR 455
           LK+  ++W  +V+CLYEAGK D+++LLDL CEAL+P    SR
Sbjct: 416 LKKLCSQWSNIVMCLYEAGKCDKVRLLDLFCEALDPESDMSR 457

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224126189\|ref\|XP_002319778.1\| predicted protein [Populus trichocarpa] gi\|222858154\|gb\|EEE95701.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449451968\|ref\|XP_004143732.1\| PREDICTED: origin recognition complex subunit 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449488713\|ref\|XP_004158149.1\| PREDICTED: origin recognition complex subunit 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|79514788\|ref\|NP_197171.2\| origin recognition complex subunit 3 [Arabidopsis thaliana] gi\|47681285\|gb\|AAT37463.1\| origin recognition complex protein 3 [Arabidopsis thaliana] gi\|332004943\|gb\|AED92326.1\| origin recognition complex subunit 3 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356544321\|ref\|XP_003540601.1\| PREDICTED: origin recognition complex subunit 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|357492693\|ref\|XP_003616635.1\| Origin recognition complex subunit [Medicago truncatula] gi\|355517970\|gb\|AES99593.1\| Origin recognition complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297807693\|ref\|XP_002871730.1\| ATORC3/ORC3 [Arabidopsis lyrata subsp. lyrata] gi\|297317567\|gb\|EFH47989.1\| ATORC3/ORC3 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|297737264\|emb\|CBI26465.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|9755721\|emb\|CAC01833.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		457
TAIR\|locus:2148995		734	ORC3 "origin recognition compl	0.943	0.587	0.563	9.3e-130
UNIPROTKB\|F1Q348		712	ORC3 "Uncharacterized protein"	0.286	0.183	0.312	3e-15
UNIPROTKB\|Q9UBD5		711	ORC3 "Origin recognition compl	0.286	0.184	0.312	2e-14
UNIPROTKB\|F1N6W8		712	ORC3 "Origin recognition compl	0.286	0.183	0.312	6.5e-14
UNIPROTKB\|Q32PJ3		712	ORC3 "Origin recognition compl	0.286	0.183	0.312	6.5e-14
UNIPROTKB\|Q5DJU3		713	ORC3 "Origin recognition compl	0.286	0.183	0.305	6e-13
RGD\|1308457		711	Orc3 "origin recognition compl	0.286	0.184	0.305	7.9e-13
MGI\|MGI:1354944		715	Orc3 "origin recognition compl	0.326	0.208	0.28	1.3e-12
UNIPROTKB\|F1P1T5		719	ORC3 "Uncharacterized protein"	0.286	0.182	0.290	7.8e-12
UNIPROTKB\|B4DZ51		444	ORC3 "Origin recognition compl	0.286	0.295	0.312	2.5e-11

TAIR\|locus:2148995 ORC3 "origin recognition complex subunit 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1273 (453.2 bits), Expect = 9.3e-130, P = 9.3e-130
 Identities = 245/435 (56%), Positives = 316/435 (72%)

Query:    17 ETTENRLQPFFVLHEASSRKPERTSTGTVKTRKKIDFSPSKLKNVEKPDVEIAKEGGDEG 76
             +T EN ++PFFVLH+ASS       TG VK++++I+ SPS  K  ++ +VE  +E   + 
Sbjct:    23 DTAENDIRPFFVLHKASSGNHNGKLTGIVKSKRRIE-SPSP-KIAKRSEVESVEEEDGQF 80

Query:    77 YGNLRMDAFEVVWSKIESTIKDVLRDINANVFNEIHQWVRDSFSTIRSFGMLTFREATQA 136
             +  LR   FE VWSKIE TI+DVLR+ N+ VF+ IH W+R+SF +I S G L   EA ++
Sbjct:    81 FSTLRFKVFETVWSKIEKTIEDVLRNSNSKVFSGIHDWIRESFESIISSGALKLSEAVRS 140

Query:   137 FPIVTDASSKQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIG 196
             +P++T ASSKQL T +VLT+N+E VDDLLTFEEL  HLKSQGCHVA LSS+DF+AKSG+G
Sbjct:   141 YPVLTQASSKQLLTAMVLTRNLEMVDDLLTFEELELHLKSQGCHVAKLSSMDFSAKSGVG 200

Query:   197 GCLRSLLRQFLVAPLDAADISILASWYREQGNYNNPVVVIVDDIERCCGSVLSDFILMFS 256
             GCLR LLRQF++  +D AD++ILASWYRE  N+ NPVV+IVDD ERCCG VLSD IL+ S
Sbjct:   201 GCLRGLLRQFVMPTVDVADVTILASWYRENKNHENPVVIIVDDTERCCGPVLSDLILILS 260

Query:   257 EWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQCS 316
             EW +K+P+ LIMGV+T  DAPR IL  N LQ LC   FTL +P+ERMDA+++AV ++ CS
Sbjct:   261 EWAIKVPIFLIMGVSTAHDAPRKILSVNALQRLCATRFTLSSPAERMDAVLKAVFLKPCS 320

Query:   317 GFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQHFSMEPLSIILKGFFLE--EDRXX 374
             GF++SHKVA+FMR+YF+ QDGT+TSF+R LKIAC QHFS+EPLSI+L+ F  +       
Sbjct:   321 GFTVSHKVALFMRSYFLCQDGTLTSFVRTLKIACLQHFSLEPLSIMLEHFCHDGVNQLSG 380

Query:   375 XXXXXXXXAMFKHAFDLPSYGRNKMGEENVGSFAHCLSELKRSQTEWRTVVLCLYEAGKG 434
                     A  KHAFDLPS  RNK+         H L +L+R    W  VVLCLYEAGK 
Sbjct:   381 EGTELLTEATMKHAFDLPSVTRNKITRSTFEMLPHFLLDLQRMPNPWSIVVLCLYEAGKF 440

Query:   435 DRIQLLDLLCEALNP 449
             D+++LLD+ CE L+P
Sbjct:   441 DKLRLLDIFCEILDP 455

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005664 "nuclear origin of replication recognition complex" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA;ISS

GO:0000808 "origin recognition complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

UNIPROTKB\|F1Q348 ORC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9UBD5 ORC3 "Origin recognition complex subunit 3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N6W8 ORC3 "Origin recognition complex subunit 3" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q32PJ3 ORC3 "Origin recognition complex subunit 3" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5DJU3 ORC3 "Origin recognition complex subunit 3" [Spermophilus citellus (taxid:9997)]	Back alignment and assigned GO terms

RGD\|1308457 Orc3 "origin recognition complex, subunit 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1354944 Orc3 "origin recognition complex, subunit 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P1T5 ORC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|B4DZ51 ORC3 "Origin recognition complex subunit 3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		457
pfam07034		313	pfam07034, ORC3_N, Origin recognition complex (ORC	8e-88

>gnl\|CDD\|219275 pfam07034, ORC3_N, Origin recognition complex (ORC) subunit 3 N-terminus	Back alignment and domain information

 Score =  270 bits (692), Expect = 8e-88
 Identities = 95/312 (30%), Positives = 162/312 (51%), Gaps = 29/312 (9%)

Query: 66  VEIAKEGGDEGYGNLRMDAFEVVWSKIESTIKDVLRDINANVFNEIHQWVRDSFSTIRSF 125
            E   E  ++    LR +A++ +W KI+S I+ +  + NA +F+++  ++R+S ++ +S 
Sbjct: 16  FECVSEDDEDLTSQLRFEAYQRLWEKIKSHIERLQDESNAKIFDQLLDFIRESHASRQSE 75

Query: 126 GMLTFREATQAFPIVTDASSKQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQ-GCHVANL 184
              T  E             +++ T  +LT  +   D LLTFE L  HL++    HV  L
Sbjct: 76  ARDTESEMRA----------REIPTAALLT-GVNVPDHLLTFESLTEHLRNNVTPHVVLL 124

Query: 185 SSLDFTAKSGIGGCLRSLLRQFLVAPLDAADISILA--------SWYREQGNYNN----- 231
            S D +A  G G     LL Q +   +D AD    A         WY ++ N+++     
Sbjct: 125 QSRDCSALKGAGE---KLLGQLMEGTVDVADEEEEARTEKSDSAVWYAKKKNFDSSLWRS 181

Query: 232 -PVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPRNILLSNVLQCLC 290
            PVVVI+ D E     VL DFIL+ SE+V  +P +L+ G+ T+  A   +L  +V   LC
Sbjct: 182 PPVVVILKDFESFSPKVLQDFILILSEYVSSLPFVLVFGIATSPSAIHKLLPHHVSSLLC 241

Query: 291 PCMFTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIAC 350
             +F   +P++ ++A+++ VL+  C  F +S KV   + + F+  D ++ +FI+ LK+A 
Sbjct: 242 LELFQSLSPTQHLNAVLDKVLLTPCFPFKLSGKVFQVLTDIFLYHDFSVQNFIKGLKLAL 301

Query: 351 SQHFSMEPLSII 362
            +HF  +PLS +
Sbjct: 302 LEHFFTQPLSAL 313

This family represents the N-terminus (approximately 300 residues) of subunit 3 of the eukaryotic origin recognition complex (ORC). Origin recognition complex (ORC) is composed of six subunits that are essential for cell viability. They collectively bind to the autonomously replicating sequence (ARS) in a sequence-specific manner and lead to the chromatin loading of other replication factors that are essential for initiation of DNA replication. Length = 313

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		457
PF07034		330	ORC3_N: Origin recognition complex (ORC) subunit 3	100.0
KOG2538		578	consensus Origin recognition complex, subunit 3 [R	99.78
KOG2538		578	consensus Origin recognition complex, subunit 3 [R	97.46
PRK00411		394	cdc6 cell division control protein 6; Reviewed	96.98
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	96.71
PTZ00112		1164	origin recognition complex 1 protein; Provisional	94.5
COG1474		366	CDC6 Cdc6-related protein, AAA superfamily ATPase	91.16
PF00308		219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	88.98
PF07693		325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	86.9
PF13191		185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	84.82
KOG1514		767	consensus Origin recognition complex, subunit 1, a	83.34
TIGR00678		188	holB DNA polymerase III, delta' subunit. At positi	82.81
PRK06620		214	hypothetical protein; Validated	81.11
PRK04195		482	replication factor C large subunit; Provisional	80.83
PRK06893		229	DNA replication initiation factor; Validated	80.82
PF00004		132	AAA: ATPase family associated with various cellula	80.35
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	80.21
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	80.16

>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []	Back alignment and domain information

Probab=100.00  E-value=8e-70  Score=552.86  Aligned_cols=278  Identities=33%  Similarity=0.564  Sum_probs=254.9

Q ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccccchhhhccccCccccccccCccce
Q 042861           71 EGGDEGYGNLRMDAFEVVWSKIESTIKDVLRDINANVFNEIHQWVRDSFSTIRSFGMLTFREATQAFPIVTDASSKQLFT  150 (457)
Q Consensus        71 ~~e~~~~~~~R~~~y~~~W~~~~~~Iq~il~~~n~~v~~~I~~fI~~~~~~~~s~~~p~~~~a~~~~~~~~~~~~~~IPT  150 (457)
                      ++|++.+++.||++|+++|++++++||+|++++|+++|++|++||++++......+.          +|.+....++|||
T Consensus        21 ~~~~~~~~~~R~~~y~~~W~~~~~~Iq~il~~~n~~~f~~l~~Fi~~~~~~~~~~~~----------~~~~~~~~~~IPt   90 (330)
T PF07034_consen   21 EDEEEEAVQLRYEAYQKLWSKIESRIQEILRELNSKLFDDLVDFIRNSHSSDESSAR----------DWASQMNSREIPT   90 (330)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccc----------cccccccccccch
Confidence            336677999999999999999999999999999999999999999999865432211          2333445589999


Q ss_pred             EEEecCCCCCCchHHHHHHHHHHhhhc-CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCC---------------cc
Q 042861          151 GLVLTKNMEFVDDLLTFEELGRHLKSQ-GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLD---------------AA  214 (457)
Q Consensus       151 AllltGnin~~dh~~~F~~L~~~L~~~-~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~---------------~y  214 (457)
                      |+|++| +|++||..+|++|.++|+++ +|+||+|+|+||+   ++|++||++++||++...+               .|
T Consensus        91 A~lltG-vN~~dh~~~F~~L~~~L~~~~~~~vv~L~S~dc~---~lk~~lk~iv~ql~~~~~~~~~~~~~~~~~~~~~~y  166 (330)
T PF07034_consen   91 ALLLTG-VNIPDHDLLFEQLSERLQSSVGPYVVRLNSKDCS---NLKSALKSIVRQLMSDKSDVDEDEEEEEKGQRRLNY  166 (330)
T ss_pred             HHHHhC-CCCccHHHHHHHHHHHHHhCCCcEEEEEecccch---HHHHHHHHHHHHHHhcccccccccchhhcccCcCCC
Confidence            999999 89999999999999999987 7999999999999   7999999999999986542               47


Q ss_pred             cHHHHHHHHHhhc----------------CCCCCEEEEecCccccCchhHHHHHHHHHHhhccCCeEEEEeecCCChhHh
Q 042861          215 DISILASWYREQG----------------NYNNPVVVIVDDIERCCGSVLSDFILMFSEWVLKIPVILIMGVTTTLDAPR  278 (457)
Q Consensus       215 Dl~~L~~Wy~~~~----------------~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~~IP~vLVfGIATs~~~~~  278 (457)
                      ||+.|++||...+                +.++||||||+|+|+||++||+|||.+||+|+++|||+|||||||++++||
T Consensus       167 d~~~L~~wy~~~~~~~~~~~~~~~~~~~~~~~~~lVIi~eD~EsF~~~VL~dlI~ils~~~~~lP~vli~GiaTs~~~~~  246 (330)
T PF07034_consen  167 DMDILAAWYQNNTKKNDSPSKQKNFSSSRDKSPPLVIIFEDFESFDSQVLQDLILILSSYLDRLPFVLIFGIATSVEAFH  246 (330)
T ss_pred             CHHHHHHHHHhhhccccchhhhcccccccccCCCEEEEEcccccCCHHHHHHHHHHHHhccCCcCEEEEEecCCChHHHH
Confidence            9999999998211                234799999999999999999999999999999999999999999999999


Q ss_pred             hhccHHHHhhcccceeeeCCcchHHHHHHHHHHhcCCCceeeChhhHHHHHHHHHhccCCHHHHHHHHHHHHHhhhccCc
Q 042861          279 NILLSNVLQCLCPCMFTLGTPSERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFVRQDGTITSFIRALKIACSQHFSMEP  358 (457)
Q Consensus       279 ~~Lp~s~~slL~~~~F~~~s~~~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~~~d~Sv~~fi~~LK~a~M~HFy~nP  358 (457)
                      ++||++++++|++++|++.++++++++|+++++++++.||+|||+++++|+++|++||+||++||++||||||+|||+||
T Consensus       247 ~~Lp~~~~~~L~~~~F~~~~~~~~l~~v~~~~l~~~~~~~~l~~~~~~~L~~~f~~~~~Sv~~fi~~lk~~~m~HF~~nP  326 (330)
T PF07034_consen  247 SRLPRSTLSLLRIKKFQLQSSSEILERVLEKVLLSPDFPFKLGPRVLQFLLDRFLDHDFSVDSFISGLKYAYMEHFYSNP  326 (330)
T ss_pred             hhCCHHHHhhcCceEEEeCChHHHHHHHHHHHhcCCCCCceECHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc
Q 042861          359 LSII  362 (457)
Q Consensus       359 LSvL  362 (457)
                      ||+|
T Consensus       327 LS~L  330 (330)
T PF07034_consen  327 LSVL  330 (330)
T ss_pred             cccC
Confidence            9986

ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex

>KOG2538 consensus Origin recognition complex, subunit 3 [Replication, recombination and repair]	Back alignment and domain information

>KOG2538 consensus Origin recognition complex, subunit 3 [Replication, recombination and repair]	Back alignment and domain information

>PRK00411 cdc6 cell division control protein 6; Reviewed	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>PTZ00112 origin recognition complex 1 protein; Provisional	Back alignment and domain information

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication	Back alignment and domain information

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals	Back alignment and domain information

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A	Back alignment and domain information

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]	Back alignment and domain information

>TIGR00678 holB DNA polymerase III, delta' subunit	Back alignment and domain information

>PRK06620 hypothetical protein; Validated	Back alignment and domain information

>PRK04195 replication factor C large subunit; Provisional	Back alignment and domain information

>PRK06893 DNA replication initiation factor; Validated	Back alignment and domain information

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		457
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 47.9 bits (113), Expect = 6e-06
 Identities = 74/490 (15%), Positives = 139/490 (28%), Gaps = 154/490 (31%)

Query: 10  SSPPSSPETTENRLQPFFVLHEA-SSRKPERTST-----GTVKT---------RKKIDFS 54
           +      +   +RLQP+  L +A    +P +        G+ KT          K     
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 55  PSK-----LKNVEKPDVEIAK------------EGGDEGYGNLRMDAFEVVWSKIESTIK 97
             K     LKN   P+  +                  +   N+++     + +++   +K
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-IHSIQAELRRLLK 239

Query: 98  D--------VLRDINANVFNEIHQWVRDSFSTIRSFG-----MLTFREATQAFPIVTDAS 144
                    VL +            V+++     +F      +LT R        VTD  
Sbjct: 240 SKPYENCLLVLLN------------VQNA-KAWNAFNLSCKILLTTRFKQ-----VTDFL 281

Query: 145 SKQLFTGLVLTKNMEFVDDLLTFEELGRHLKSQGCHVANLSSLDFTAKSGIGGCLRSLLR 204
           S    T + L    +     LT +E                      K  +    + L R
Sbjct: 282 SAATTTHISL----DHHSMTLTPDE----------------VKSLLLKY-LDCRPQDLPR 320

Query: 205 QFL-VAPLDAADISILASWYREQ----GNYNNPVVVIVDDIERCCGSVLSDFIL------ 253
           + L   P     +SI+A   R+      N+ +     +  I     +VL           
Sbjct: 321 EVLTTNPR---RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 254 --MFSEWVLKIP--VILIMGVTTTLDAPRNILLSNVLQCLC---PCMFTLGTPSERMD-- 304
             +F      IP  ++ ++           ++       L    P   T+  PS  ++  
Sbjct: 378 LSVFPPSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 305 -----------AIIEAVLVRQCSGFSISHKVAVFMRNYF----------VRQDGTITSF- 342
                      +I++   + +   F     +  ++  YF          +     +T F 
Sbjct: 437 VKLENEYALHRSIVDHYNIPKT--FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 343 ------------IRALKIACSQHFSMEPLSIIL---KGFFLEEDRQGLQDGLLLQAMFKH 387
                       IR    A +   S+      L   K +  + D    +   L+ A+   
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP---KYERLVNAILD- 550

Query: 388 AFDLPSYGRN 397
            F LP    N
Sbjct: 551 -F-LPKIEEN 558

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		457
3te6_A		318	Regulatory protein SIR3; heterochromatin, gene sil	97.06
1fnn_A		389	CDC6P, cell division control protein 6; ORC1, AAA	96.68
2v1u_A		387	Cell division control protein 6 homolog; DNA repli	95.8
2qby_B		384	CDC6 homolog 3, cell division control protein 6 ho	95.34
2qby_A		386	CDC6 homolog 1, cell division control protein 6 ho	94.96
3u61_B		324	DNA polymerase accessory protein 44; AAA+, ATP hyd	93.14
1w5s_A		412	Origin recognition complex subunit 2 ORC2; replica	92.23
2chg_A		226	Replication factor C small subunit; DNA-binding pr	91.85
4fcw_A		311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	90.86
3bos_A		242	Putative DNA replication factor; P-loop containing	88.49
1sxj_B		323	Activator 1 37 kDa subunit; clamp loader, processi	83.14
1iqp_A		327	RFCS; clamp loader, extended AAA-ATPase domain, co	83.02
3syl_A		309	Protein CBBX; photosynthesis, rubisco activase, AA	82.5
3pvs_A		447	Replication-associated recombination protein A; ma	80.42
2chq_A		319	Replication factor C small subunit; DNA-binding pr	80.19

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=97.06  E-value=0.044  Score=54.75  Aligned_cols=194  Identities=10%  Similarity=0.123  Sum_probs=128.1

Q ss_pred             ceEEEecCCCCCCchHHHHHHHHHHhhhc-------CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCC-CcccHHHHH
Q 042861          149 FTGLVLTKNMEFVDDLLTFEELGRHLKSQ-------GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPL-DAADISILA  220 (457)
Q Consensus       149 PTAllltGnin~~dh~~~F~~L~~~L~~~-------~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~-~~yDl~~L~  220 (457)
                      |..+++.|- -=+.--.+.+.+...|+..       ...++.++...+.   +-...++.+.++|.+... ...-++.|.
T Consensus        45 ~~~lli~Gp-PGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~---t~~~~~~~I~~~L~g~~~~~~~~~~~L~  120 (318)
T 3te6_A           45 NKLFYITNA-DDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA---GMDALYEKIWFAISKENLCGDISLEALN  120 (318)
T ss_dssp             CCEEEEECC-CSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-----HHHHHHHHHHHSCCC--CCCCHHHHH
T ss_pred             CCeEEEECC-CCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC---CHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            446677761 1134445667777777532       2367888876665   566788999999865432 223477888


Q ss_pred             HHHHhh-cCCCCCEEEEecCccccCchhHHHHHHHHHHhhc--cCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeC
Q 042861          221 SWYREQ-GNYNNPVVVIVDDIERCCGSVLSDFILMFSEWVL--KIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLG  297 (457)
Q Consensus       221 ~Wy~~~-~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~~--~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~  297 (457)
                      ..+... .....++||+|++++.+.   =+|++.-|..|..  .-+ +.|+||+.+.+.....|++.+.+++..+.|.+.
T Consensus       121 ~~f~~~~~~~~~~~ii~lDE~d~l~---~q~~L~~l~~~~~~~~s~-~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~  196 (318)
T 3te6_A          121 FYITNVPKAKKRKTLILIQNPENLL---SEKILQYFEKWISSKNSK-LSIICVGGHNVTIREQINIMPSLKAHFTEIKLN  196 (318)
T ss_dssp             HHHHHSCGGGSCEEEEEEECCSSSC---CTHHHHHHHHHHHCSSCC-EEEEEECCSSCCCHHHHHTCHHHHTTEEEEECC
T ss_pred             HHHHHhhhccCCceEEEEecHHHhh---cchHHHHHHhcccccCCc-EEEEEEecCcccchhhcchhhhccCCceEEEeC
Confidence            877653 123568999999999996   2555555555642  223 467899999898888888889999987777776


Q ss_pred             Ccc-hHHHHHHHHHHhcCC-C--------------------------------ceeeChhhHHHHHHHHHhccCCHHHHH
Q 042861          298 TPS-ERMDAIIEAVLVRQC-S--------------------------------GFSISHKVAVFMRNYFVRQDGTITSFI  343 (457)
Q Consensus       298 s~~-~~l~~I~e~vll~~~-~--------------------------------~f~Lg~~v~~~L~d~F~~~d~Sv~~fi  343 (457)
                      +-+ +-+..|++.-+.... .                                ...+.+.+++++..+--..+..+..-+
T Consensus       197 pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al  276 (318)
T 3te6_A          197 KVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAF  276 (318)
T ss_dssp             CCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHH
Confidence            655 444555544443321 1                                125899999999988777788877777


Q ss_pred             HHHHHHH
Q 042861          344 RALKIAC  350 (457)
Q Consensus       344 ~~LK~a~  350 (457)
                      ..++.|.
T Consensus       277 ~ilr~A~  283 (318)
T 3te6_A          277 KICEAAV  283 (318)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776665

PyMOL of 3te6

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20	Back alignment and structure

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}	Back alignment and structure

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}	Back alignment and structure

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}	Back alignment and structure

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*	Back alignment and structure

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*	Back alignment and structure

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}	Back alignment and structure

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*	Back alignment and structure

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A	Back alignment and structure

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20	Back alignment and structure

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20	Back alignment and structure

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*	Back alignment and structure

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}	Back alignment and structure

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		457
d1fnna2		276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	92.33
d1sxjd2		237	Replication factor C2 {Baker's yeast (Saccharomyce	90.97
d1iqpa2		231	Replication factor C {Archaeon Pyrococcus furiosus	89.9
d1l8qa2		213	Chromosomal replication initiation factor DnaA {Aq	87.22

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.33  E-value=3  Score=35.82  Aligned_cols=199  Identities=11%  Similarity=0.055  Sum_probs=116.3

Q ss_pred             ccceEEEecCCCCCCchHHHHHHHHHHhhhc-CcEEEEeeCCCCCCCCChhHHHHHHHHHHHcCCCCc-ccHH-HHHHHH
Q 042861          147 QLFTGLVLTKNMEFVDDLLTFEELGRHLKSQ-GCHVANLSSLDFTAKSGIGGCLRSLLRQFLVAPLDA-ADIS-ILASWY  223 (457)
Q Consensus       147 ~IPTAllltGnin~~dh~~~F~~L~~~L~~~-~~~Vv~L~s~dc~~~~~i~~~Lk~ll~qli~~~~~~-yDl~-~L~~Wy  223 (457)
                      ..|..+++.|--. +.--.+.+.|...++.. ...++......+.   .....++....++....... .... .+..-.
T Consensus        41 ~~~~~lll~GppG-tGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (276)
T d1fnna2          41 HHYPRATLLGRPG-TGKTVTLRKLWELYKDKTTARFVYINGFIYR---NFTAIIGEIARSLNIPFPRRGLSRDEFLALLV  116 (276)
T ss_dssp             SSCCEEEEECCTT-SSHHHHHHHHHHHHTTSCCCEEEEEETTTCC---SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHH
T ss_pred             CCCCceEEECCCC-CCHHHHHHHHHHHHhcccCCcEEEecchhhh---hhhhhhhhhHHhhhhhhhhhccchhHHHHHHH
Confidence            4566788888222 45456778898888765 4677777766665   45666666666654433221 1111 112122


Q ss_pred             HhhcCCCCCEEEEecCccccCchhHHHHHHHHHHhh--ccCCeEEEEeecCCChhHhhhccHHHHhhcccceeeeCCcc-
Q 042861          224 REQGNYNNPVVVIVDDIERCCGSVLSDFILMFSEWV--LKIPVILIMGVTTTLDAPRNILLSNVLQCLCPCMFTLGTPS-  300 (457)
Q Consensus       224 ~~~~~~~~~lVvil~D~Esfd~~VL~DlI~llSs~~--~~IP~vLVfGIATs~~~~~~~Lp~s~~slL~~~~F~~~s~~-  300 (457)
                      ..........++++.+.+.......+++..++..+.  ...++ .+.|+++..+... .+.....+++....+.+.+.. 
T Consensus       117 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~-~~~~~~~~r~~~~~i~~~~~~~  194 (276)
T d1fnna2         117 EHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRI-ALVIVGHNDAVLN-NLDPSTRGIMGKYVIRFSPYTK  194 (276)
T ss_dssp             HHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCE-EEEEEESSTHHHH-TSCHHHHHHHTTCEEECCCCBH
T ss_pred             HHHhhcccccccchhHHHHhhhhhhhhHHHHHhccccccccce-EEeecCCchhhhh-hcchhhhhhhcchhccccchhH
Confidence            222223467888899999999988888877776543  33333 3456666655544 455555566655555555444 


Q ss_pred             hHHHHHHHHHHhcCCCceeeChhhHHHHHHHHH------hccCCHHHHHHHHHHHHH
Q 042861          301 ERMDAIIEAVLVRQCSGFSISHKVAVFMRNYFV------RQDGTITSFIRALKIACS  351 (457)
Q Consensus       301 ~~l~~I~e~vll~~~~~f~Lg~~v~~~L~d~F~------~~d~Sv~~fi~~LK~a~M  351 (457)
                      +-+..|++..+........++..+++.+.+.-.      ....++...+..++.|.+
T Consensus       195 ~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~G~~R~a~~ll~~a~~  251 (276)
T d1fnna2         195 DQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY  251 (276)
T ss_dssp             HHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhhhhcCCCHHHHHHHHHHHHH
Confidence            444455554444333344578898888877643      223566666666666643

PyMOL of d1fnna2

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure