Citrus Sinensis ID: 042874

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MKKLILGVDEKDDIIKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKAASTNCPPSEEFLNHIH
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccHHHHHccc
Coil and Loop (DISEMBL)
mkklilgvdekDDIIKQIKAIRNLEQLFKAASSKGLSYYVFVGYsyplatlallplififpstttvvppfkFSLLLRIFLLSSIGVLSQTVGYIGiayssptlsaaitntIPAFTFTLAILFSCLKMMSWIEIIIIIIINndtltskmdkaastncppseeflnhih
Flexible Loop (DISEMBL)
mkklilgvdekddiIKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKAAStncppseeflnhih
Low Complexity Region (SEG)
MKKLILGVDEKDDIIKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKfslllrifllssiGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWieiiiiiiiNNDTLTSKMDKAASTNCPPSEEFLNHIH
Disordered region (IsUnstruct)
****ILGVDEKDDIIKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTL***********************
Disordered Region (DISOPRED)
*******VDEKDDIIKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKAAST*************
Disordered Region (DISEMBL)
MKKLILGVDEKDDIIKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKAASTNCPPSEEFLNHIH
Disordered Region (DISPRO)
*KKLILGVDEKDDIIKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKAASTNCPPSEEFLNHI*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKLILGVDEKDDIIKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKAASTNCPPSEEFLNHIH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q9FL08	368	WAT1-related protein At5g	yes	no	0.568	0.258	0.572	3e-20
F4KHA8	370	WAT1-related protein At5g	no	no	0.568	0.256	0.552	6e-19
Q94JU2	367	WAT1-related protein At3g	no	no	0.586	0.267	0.554	3e-18
F4JK59	347	WAT1-related protein At4g	no	no	0.604	0.291	0.519	3e-16
Q945L4	339	WAT1-related protein At5g	no	no	0.592	0.292	0.49	4e-16
Q9LRS5	353	WAT1-related protein At3g	no	no	0.640	0.303	0.490	2e-14
Q9FL41	402	WAT1-related protein At5g	no	no	0.514	0.213	0.404	3e-12
Q56X95	355	WAT1-related protein At3g	no	no	0.610	0.287	0.446	4e-11
F4IJ08	394	WAT1-related protein At2g	no	no	0.580	0.246	0.4	6e-11
F4IYZ0	358	WAT1-related protein At3g	no	no	0.640	0.298	0.472	1e-10

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/96 (57%), Positives = 70/96 (72%), Gaps = 1/96 (1%)

Query: 27  LFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGV 86
           LFKAA+ +GLS+YVFV YSY ++TL LLPL  IF  +  + P  K  L  +IFLL  +G 
Sbjct: 37  LFKAATLRGLSFYVFVFYSYIVSTLLLLPLSVIFGRSRRL-PAAKSPLFFKIFLLGLVGF 95

Query: 87  LSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILF 122
           +SQ  G  GIAYSSPTL++AI+N  PAFTFTLA++F
Sbjct: 96  MSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVIF 131

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 69/96 (71%), Gaps = 1/96 (1%)

Query: 27  LFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGV 86
           LFKAA+ +GLS+YVFV Y+Y +ATL LLPL  IF  +  + P  K  +   IFLL+ +G 
Sbjct: 38  LFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKRL-PSAKTPVFFNIFLLALVGF 96

Query: 87  LSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILF 122
           +S  VG  GI YSSPTL++AI+N  PAFTFTLA++F
Sbjct: 97  MSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIF 132

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/101 (55%), Positives = 71/101 (70%), Gaps = 3/101 (2%)

Query: 23  NLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFI-FPSTTTVVPPFKFSLLLRIFLL 81
            L  LFKAA+ KG+S++VF+ YSY LA L LLP +F  F S T  +PP  FS+L +I LL
Sbjct: 25  GLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFCSFRSRT--LPPMNFSILYKIVLL 82

Query: 82  SSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILF 122
             IG  S  +GY GI YSSPTL++AI+N  PAFTF LA++F
Sbjct: 83  GIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVF 123

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 70/102 (68%), Gaps = 1/102 (0%)

Query: 27  LFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGV 86
           L+KAA+ +G S+YVFV Y+Y  ATL LL L  IF  + ++ P  K SL  +IFLL+ +G+
Sbjct: 34  LYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSRSL-PTAKSSLFFKIFLLALLGL 92

Query: 87  LSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMM 128
            S+  G  GI YSSPTLS+AI+N  PAFTF LAI F   ++M
Sbjct: 93  TSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQVM 134

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)

Query: 23  NLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLS 82
            +  L KAA+SKGLS +V + YSY   +L LLPL F F   +  +PP  FS+L  + +L 
Sbjct: 26  GVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTF-FSFRSRSLPPLTFSILCNMGILG 84

Query: 83  SIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILF 122
            I    Q +GY GI YSSPTLS+A++N  PAFTF LA++F
Sbjct: 85  LIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVF 124

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRS5|WTR22_ARATH WAT1-related protein At3g28100 OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 71/108 (65%), Gaps = 1/108 (0%)

Query: 20  AIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIF 79
            +  +  LFK A+SKGL+ Y F+GYSY LA+L LLP +F F   +  +PP   S+L +I 
Sbjct: 24  GVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLPSLF-FTDRSRSLPPLSLSILSKIG 82

Query: 80  LLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKM 127
           LL  +G +    GYIGI YSSPTL++AI+N  PA TF LAI+F   K+
Sbjct: 83  LLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKV 130

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 55/89 (61%), Gaps = 3/89 (3%)

Query: 35  GLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLSQTVGY 93
           G+S+YV V Y + +AT  + P  F F       P   FS+ +++F+L  +G V+ Q   Y
Sbjct: 43  GMSHYVLVVYRHAIATAVIAPFAFFFERKAQ--PKITFSIFMQLFILGLLGPVIDQNFYY 100

Query: 94  IGIAYSSPTLSAAITNTIPAFTFTLAILF 122
           +G+ Y+SPT S A++N +PA TF LA+LF
Sbjct: 101 MGLKYTSPTFSCAMSNMLPAMTFILAVLF 129

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 24  LEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSS 83
           +  LFKAA+SKGL+ Y F+ YSY + ++ LLP   IF   +  +P    S+L +I +L  
Sbjct: 27  MNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPS-HIFSYRSRSLPSLSLSILCKIGVLGL 85

Query: 84  IGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLK 126
           +G      G+IGI YS+PTL++AI+N  PA TF LAI+F   K
Sbjct: 86  LGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEK 128

Arabidopsis thaliana (taxid: 3702)

>sp|F4IJ08|WTR15_ARATH WAT1-related protein At2g40900 OS=Arabidopsis thaliana GN=At2g40900 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 3/100 (3%)

Query: 29  KAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VL 87
           K    +G+S+YV V Y    AT A+ P  F   S   V     F + +RIFLL+ +G V+
Sbjct: 30  KTVLDRGMSHYVLVAYRNAFATAAIAP--FALLSERKVRSKMTFPIFMRIFLLALLGPVI 87

Query: 88  SQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKM 127
            Q + YIG+  +SPT S+A++N +PA T  LA LF   K+
Sbjct: 88  DQNLYYIGLKLTSPTFSSAVSNIVPAITIILATLFRMEKV 127

Arabidopsis thaliana (taxid: 3702)

>sp|F4IYZ0|WTR21_ARATH WAT1-related protein At3g28080 OS=Arabidopsis thaliana GN=At3g28080 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 71/108 (65%), Gaps = 1/108 (0%)

Query: 20  AIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIF 79
           +I  L  LFK A+SKGL+ Y F+ YSY LA+L LLP +F F + +  +PP   S+L +I 
Sbjct: 24  SIVGLSTLFKVATSKGLNIYPFLSYSYLLASLLLLPSLF-FTNRSRSLPPLSASILSKIG 82

Query: 80  LLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKM 127
           LL  +G +    G IGI YS+PTL++AI N +PA TF LA++F   K+
Sbjct: 83  LLGFLGSMYVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRMEKV 130

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
225452524	359	PREDICTED: auxin-induced protein 5NG4 [V	0.658	0.306	0.521	2e-21
296087698	344	unnamed protein product [Vitis vinifera]	0.658	0.319	0.521	2e-21
356495907	367	PREDICTED: auxin-induced protein 5NG4-li	0.622	0.283	0.533	4e-20
358248788	371	uncharacterized protein LOC100814137 [Gl	0.688	0.309	0.476	4e-20
449449196	377	PREDICTED: auxin-induced protein 5NG4-li	0.628	0.278	0.537	4e-20
356571533	373	PREDICTED: auxin-induced protein 5NG4-li	0.586	0.262	0.565	1e-19
356550026	372	PREDICTED: auxin-induced protein 5NG4-li	0.562	0.252	0.578	2e-19
255552664	419	Auxin-induced protein 5NG4, putative [Ri	0.592	0.236	0.54	2e-19
449517575	125	PREDICTED: auxin-induced protein 5NG4-li	0.592	0.792	0.56	3e-19
225452526	360	PREDICTED: auxin-induced protein 5NG4 [V	0.622	0.288	0.514	4e-19

>gi|225452524|ref|XP_002279776.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera]

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 76/115 (66%), Gaps = 5/115 (4%)

Query: 24  LEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSS 83
           L  LFK+A+S+G+S YVF+ YSY +ATL L PL+FIF     ++PPFKFSLL +I  L  
Sbjct: 26  LNVLFKSATSRGMSVYVFIVYSYAVATLILFPLLFIFNGKRLLLPPFKFSLLCKICSLGF 85

Query: 84  IGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMM-----SWIEI 133
           IG L++ V Y GI YSSPTL++ I N  PA TF LAI F   K+      SW +I
Sbjct: 86  IGFLAEIVAYKGIDYSSPTLASVIGNLTPALTFMLAIFFRMEKLALRSLSSWAKI 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087698|emb|CBI34954.3| unnamed protein product [Vitis vinifera]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 76/115 (66%), Gaps = 5/115 (4%)

Query: 24  LEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSS 83
           L  LFK+A+S+G+S YVF+ YSY +ATL L PL+FIF     ++PPFKFSLL +I  L  
Sbjct: 11  LNVLFKSATSRGMSVYVFIVYSYAVATLILFPLLFIFNGKRLLLPPFKFSLLCKICSLGF 70

Query: 84  IGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMM-----SWIEI 133
           IG L++ V Y GI YSSPTL++ I N  PA TF LAI F   K+      SW +I
Sbjct: 71  IGFLAEIVAYKGIDYSSPTLASVIGNLTPALTFMLAIFFRMEKLALRSLSSWAKI 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495907|ref|XP_003516812.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 74/105 (70%), Gaps = 1/105 (0%)

Query: 24  LEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSS 83
           L  LFKAA+ +G+SY+VFV Y+Y +A + L+P  FI    + V+PP  F LL +I LL  
Sbjct: 26  LNTLFKAATLRGMSYHVFVVYAYAVAAIVLIPAPFI-SQRSRVLPPLSFPLLRKIGLLGL 84

Query: 84  IGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMM 128
           IG  SQ VGY GI +SSPTLS+AI+N +PAFTF LAI+F   K++
Sbjct: 85  IGCASQIVGYTGINFSSPTLSSAISNLVPAFTFLLAIIFRMEKVI 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248788|ref|NP_001239940.1| uncharacterized protein LOC100814137 [Glycine max] gi|255641164|gb|ACU20859.1| unknown [Glycine max]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 60/126 (47%), Positives = 81/126 (64%), Gaps = 11/126 (8%)

Query: 24  LEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTT-VVPPFKFSLLLRIFLLS 82
           L  LFKAA+ +G+SY+VFV Y+Y +A + L+P  FI     + V+PP  F LL +I LL 
Sbjct: 27  LNTLFKAATLRGMSYHVFVVYAYAVAAIVLIPGPFISQRCRSRVLPPLSFPLLRKIGLLG 86

Query: 83  SIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINND 142
            IG  SQ VGY GI++SSPTLS+AI+N +PAFTF LAI+F   K          +I+ N 
Sbjct: 87  LIGCASQIVGYTGISFSSPTLSSAISNLVPAFTFLLAIIFRMEK----------VIVRNT 136

Query: 143 TLTSKM 148
           T  +K+
Sbjct: 137 TCQAKV 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449196|ref|XP_004142351.1| PREDICTED: auxin-induced protein 5NG4-like [Cucumis sativus]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 74/106 (69%), Gaps = 1/106 (0%)

Query: 23  NLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLS 82
            L  LFKAA++ G+S++VFV YSY  A L LLP  FI   T+T +PP  FS+  +I LL 
Sbjct: 27  GLNTLFKAATAAGMSHHVFVVYSYSFAALLLLPSPFI-SRTSTRLPPLNFSITSKIALLG 85

Query: 83  SIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMM 128
            IG  SQ +GY GI YSSPTL++AI+N +PAFTF LAI+F   K++
Sbjct: 86  LIGSCSQIMGYTGINYSSPTLASAISNLVPAFTFILAIIFRMEKVV 131

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571533|ref|XP_003553931.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/99 (56%), Positives = 70/99 (70%), Gaps = 1/99 (1%)

Query: 23  NLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLS 82
            L  LFKAA+ +G+S YVFV Y+Y +A L LLP+ F F   + VVPP  FS+L +I LL 
Sbjct: 26  GLFTLFKAATLQGMSNYVFVTYAYSVAFLVLLPVTF-FYRRSRVVPPLTFSILSKIALLG 84

Query: 83  SIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAIL 121
            IG  SQ +GY GI YSSPTLS+AI+N  PAFTF LA++
Sbjct: 85  VIGCSSQILGYAGIRYSSPTLSSAISNLTPAFTFVLAVI 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550026|ref|XP_003543391.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 69/95 (72%), Gaps = 1/95 (1%)

Query: 27  LFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGV 86
           LFKAA+ +G+S YVFV Y+Y +A L LLP+ F F   + VVPP  FS+L +I LL  IG 
Sbjct: 29  LFKAATLQGMSNYVFVTYAYSVALLVLLPVTF-FYRRSRVVPPLSFSILSKIALLGVIGS 87

Query: 87  LSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAIL 121
            SQ +GY GI YSSPTLS+AI+N  PAFTF LA++
Sbjct: 88  SSQILGYAGIRYSSPTLSSAISNLTPAFTFMLAVI 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552664|ref|XP_002517375.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223543386|gb|EEF44917.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 72/100 (72%), Gaps = 1/100 (1%)

Query: 23  NLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLS 82
            L  L+KAA+ +G++Y+VF+ Y+Y +A L LLP  FI  S + ++PP  FS+L +I LL 
Sbjct: 87  GLNTLYKAATLEGMNYHVFIVYAYAIAALVLLPAPFI-SSRSRMLPPLSFSILCKIGLLG 145

Query: 83  SIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILF 122
            IG  SQ +GY GI YSSPTLS+AI+N  PAFTF LAI+F
Sbjct: 146 VIGSSSQILGYTGINYSSPTLSSAISNLTPAFTFILAIIF 185

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517575|ref|XP_004165821.1| PREDICTED: auxin-induced protein 5NG4-like, partial [Cucumis sativus]

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/100 (56%), Positives = 71/100 (71%), Gaps = 1/100 (1%)

Query: 23  NLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLS 82
            L  LFKAA++ G+S++VFV YSY  A L LLP  FI   T+T +PP  FS+  +I LL 
Sbjct: 27  GLNTLFKAATAAGMSHHVFVVYSYSFAALLLLPSPFI-SRTSTRLPPLNFSITSKIALLG 85

Query: 83  SIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILF 122
            IG  SQ +GY GI YSSPTL++AI+N +PAFTF LAI+F
Sbjct: 86  LIGSCSQIMGYTGINYSSPTLASAISNLVPAFTFILAIIF 125

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452526|ref|XP_002279762.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera]

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/105 (51%), Positives = 73/105 (69%), Gaps = 1/105 (0%)

Query: 23  NLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLS 82
            L  L+KAA+ +GL+Y+VFV Y+Y +A L LLP  FI      V+PP  F +L +IF+L 
Sbjct: 25  GLNTLYKAATLRGLNYHVFVVYAYGIAALVLLPSPFI-THRRGVLPPLSFPVLCKIFVLG 83

Query: 83  SIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKM 127
            IG  SQT+GY GI  SSPTL++AI+N +PAFTF LA++F   K+
Sbjct: 84  LIGCASQTMGYRGINISSPTLASAISNLVPAFTFILAVIFRMEKL 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.616	0.291	0.461	5.8e-18
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.640	0.297	0.444	8.7e-18
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.580	0.264	0.49	1.2e-17
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.568	0.256	0.510	1.3e-17
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.640	0.298	0.425	3.3e-16
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.604	0.291	0.460	2.3e-15
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.568	0.280	0.458	2.9e-14
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.586	0.276	0.414	5.7e-13
TAIR|locus:2031144	343	UMAMIT22 "Usually multiple aci	0.562	0.274	0.360	1.9e-09
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.550	0.228	0.347	2e-09

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 48/104 (46%), Positives = 62/104 (59%)

Query:    24 LEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKXXXXXXXXXXXX 83
             +  LFK A+SKGL+ Y F+GYSY LA+L LLP +F F   +  +PP              
Sbjct:    28 ISTLFKVATSKGLNLYAFLGYSYLLASLLLLPSLF-FTDRSRSLPPLSLSILSKIGLLGL 86

Query:    84 XGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKM 127
              G +    GYIGI YSSPTL++AI+N  PA TF LAI+F   K+
Sbjct:    87 LGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKV 130

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 8.7e-18, P = 8.7e-18
 Identities = 48/108 (44%), Positives = 65/108 (60%)

Query:    20 AIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKXXXXXXXX 79
             ++  +  LFK A+SKGL+ Y F+GYSY LA+L LLP +F F + ++ +PP          
Sbjct:    27 SVVGISTLFKFATSKGLNIYPFLGYSYLLASLLLLPSLF-FTNRSSSLPPLSVSILSKIG 85

Query:    80 XXXXXGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKM 127
                  G +    GYIGI YSSPTL++AI N  PA TF LAI+F   K+
Sbjct:    86 LLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFRMEKV 133

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 49/100 (49%), Positives = 62/100 (62%)

Query:    24 LEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFI-FPSTTTVVPPFKXXXXXXXXXXX 82
             L  LFKAA+ KG+S++VF+ YSY LA L LLP +F  F S T  +PP             
Sbjct:    26 LNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFCSFRSRT--LPPMNFSILYKIVLLG 83

Query:    83 XXGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILF 122
               G  S  +GY GI YSSPTL++AI+N  PAFTF LA++F
Sbjct:    84 IIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVF 123

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 49/96 (51%), Positives = 62/96 (64%)

Query:    27 LFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKXXXXXXXXXXXXXGV 86
             LFKAA+ +GLS+YVFV Y+Y +ATL LLPL  IF  +  + P  K             G 
Sbjct:    38 LFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKRL-PSAKTPVFFNIFLLALVGF 96

Query:    87 LSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILF 122
             +S  VG  GI YSSPTL++AI+N  PAFTFTLA++F
Sbjct:    97 MSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIF 132

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 3.3e-16, P = 3.3e-16
 Identities = 46/108 (42%), Positives = 63/108 (58%)

Query:    20 AIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKXXXXXXXX 79
             +I  L  LFK A+SKGL+ Y F+ YSY LA+L LLP +F F + +  +PP          
Sbjct:    24 SIVGLSTLFKVATSKGLNIYPFLSYSYLLASLLLLPSLF-FTNRSRSLPPLSASILSKIG 82

Query:    80 XXXXXGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKM 127
                  G +    G IGI YS+PTL++AI N +PA TF LA++F   K+
Sbjct:    83 LLGFLGSMYVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRMEKV 130

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 47/102 (46%), Positives = 61/102 (59%)

Query:    27 LFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKXXXXXXXXXXXXXGV 86
             L+KAA+ +G S+YVFV Y+Y  ATL LL L  IF  + ++ P  K             G+
Sbjct:    34 LYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSRSL-PTAKSSLFFKIFLLALLGL 92

Query:    87 LSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMM 128
              S+  G  GI YSSPTLS+AI+N  PAFTF LAI F   ++M
Sbjct:    93 TSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQVM 134

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 2.9e-14, P = 2.9e-14
 Identities = 44/96 (45%), Positives = 56/96 (58%)

Query:    27 LFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKXXXXXXXXXXXXXGV 86
             L KAA+SKGLS +V + YSY   +L LLPL F F   +  +PP                 
Sbjct:    30 LVKAATSKGLSPFVVLVYSYTFGSLLLLPLTF-FSFRSRSLPPLTFSILCNMGILGLIAS 88

Query:    87 LSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILF 122
               Q +GY GI YSSPTLS+A++N  PAFTF LA++F
Sbjct:    89 AFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVF 124

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 5.7e-13, P = 5.7e-13
 Identities = 41/99 (41%), Positives = 56/99 (56%)

Query:    24 LEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKXXXXXXXXXXXX 83
             +  LFKAA+SKGL+ Y F+ YSY + ++ LLP   IF   +  +P               
Sbjct:    27 MNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPS-HIFSYRSRSLPSLSLSILCKIGVLGL 85

Query:    84 XGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILF 122
              G      G+IGI YS+PTL++AI+N  PA TF LAI+F
Sbjct:    86 LGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIF 124

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2031144 UMAMIT22 "Usually multiple acids move in and out Transporters 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
 Identities = 35/97 (36%), Positives = 48/97 (49%)

Query:    27 LFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKXXXXXXXXXXXXXGV 86
             L K A S+G + +VFV Y    A LAL P  F   S+ +   P               G+
Sbjct:    24 LSKVAISQGTNPFVFVFYRQAFAALALSPFAFFLESSKS--SPLSFILLLKIFFISLCGL 81

Query:    87 -LSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILF 122
              LS  + Y+ I  ++ T +AA TN IP+ TF LA+LF
Sbjct:    82 TLSLNLYYVAIENTTATFAAATTNAIPSITFVLALLF 118

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 33/95 (34%), Positives = 48/95 (50%)

Query:    29 KAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKXXXXXXXXXXXXXG-VL 87
             K + + G+S+YV V Y + +AT  + P  F F       P                G V+
Sbjct:    37 KISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQ--PKITFSIFMQLFILGLLGPVI 94

Query:    88 SQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILF 122
              Q   Y+G+ Y+SPT S A++N +PA TF LA+LF
Sbjct:    95 DQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLF 129

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	7e-23

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score = 92.7 bits (230), Expect = 7e-23
 Identities = 51/103 (49%), Positives = 71/103 (68%), Gaps = 1/103 (0%)

Query: 20  AIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIF 79
           ++  +  LFK A+SKGL+ Y F+GYSY LA+L LLP +F F + +  +PP   S+L +I 
Sbjct: 24  SVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLF-FTNRSRSLPPLSVSILSKIG 82

Query: 80  LLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILF 122
           LL  +G +    GYIGI YS+PTL++AI+N  PA TF LAI+F
Sbjct: 83  LLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIF 125

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
PLN00411	358	nodulin MtN21 family protein; Provisional	99.89
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.79
PRK11272	292	putative DMT superfamily transporter inner membran	99.77
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.75
PRK15430	296	putative chloramphenical resistance permease RarD;	99.75
PRK11689	295	aromatic amino acid exporter; Provisional	99.73
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.72
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.69
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.61
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.55
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.53
COG2510	140	Predicted membrane protein [Function unknown]	99.53
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.52
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.49
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.49
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.45
PRK11272	292	putative DMT superfamily transporter inner membran	99.41
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.33
PRK11689	295	aromatic amino acid exporter; Provisional	99.31
PLN00411	358	nodulin MtN21 family protein; Provisional	99.3
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.27
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.2
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.12
PRK15430	296	putative chloramphenical resistance permease RarD;	99.08
COG2962	293	RarD Predicted permeases [General function predict	99.08
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.08
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.99
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.94
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.93
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.87
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.78
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.67
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.56
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.54
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.51
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.42
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.25
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.05
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.01
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.99
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.96
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.95
KOG2765	416	consensus Predicted membrane protein [Function unk	97.94
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.63
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	97.63
COG2962	293	RarD Predicted permeases [General function predict	97.53
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.48
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.44
COG2076	106	EmrE Membrane transporters of cations and cationic	97.44
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.4
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.4
PRK11431	105	multidrug efflux system protein; Provisional	97.33
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.3
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.11
KOG3912	372	consensus Predicted integral membrane protein [Gen	97.07
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.02
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	96.85
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.35
KOG1580	337	consensus UDP-galactose transporter related protei	96.35
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.03
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.78
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.67
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	95.62
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	95.38
PRK13499	345	rhamnose-proton symporter; Provisional	95.25
KOG2766	336	consensus Predicted membrane protein [Function unk	95.07
KOG2765	416	consensus Predicted membrane protein [Function unk	94.97
KOG1581	327	consensus UDP-galactose transporter related protei	94.96
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	94.64
KOG1443	349	consensus Predicted integral membrane protein [Fun	94.5
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	94.06
PRK13499	345	rhamnose-proton symporter; Provisional	93.15
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	92.98
KOG1443	349	consensus Predicted integral membrane protein [Fun	88.41
KOG1582	367	consensus UDP-galactose transporter related protei	86.88
KOG1580	337	consensus UDP-galactose transporter related protei	84.22
KOG4831	125	consensus Unnamed protein [Function unknown]	81.84
KOG1581	327	consensus UDP-galactose transporter related protei	81.71
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	80.33

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.89  E-value=6.8e-22  Score=167.65  Aligned_cols=137  Identities=38%  Similarity=0.614  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 042874           14 IIKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGY   93 (167)
Q Consensus        14 ~~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~   93 (167)
                      +++.-.++++..++.|.+++.|++|+.++++|+.+|+++++|+++.+ +|+++.++.++++|..+.++|++|+.++.+++
T Consensus        18 ~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~-~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~   96 (358)
T PLN00411         18 MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFT-NRSRSLPPLSVSILSKIGLLGFLGSMYVITGY   96 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHH-HHhcccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677799999999999999999999999999999999999998765 33222134467888999999999866778999


Q ss_pred             HHhhccchHHHHHHhhhHHHHHHHHHHHH------hhcccCchhHHHHHHHHHHHHHHHHhcCCC
Q 042874           94 IGIAYSSPTLSAAITNTIPAFTFTLAILF------SCLKMMSWIEIIIIIIINNDTLTSKMDKAA  152 (167)
Q Consensus        94 ~gl~~tsa~~asii~~l~Pv~~~ila~~~------~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g~  152 (167)
                      +|++||+|++|+++.+++|++++++++++      ++||++ +++++|++++++|+.++..++|+
T Consensus        97 ~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~-~~~~~G~~l~~~Gv~ll~~~~g~  160 (358)
T PLN00411         97 IGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSS-VAKVMGTILSLIGALVVIFYHGP  160 (358)
T ss_pred             HHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhccccc-HHHHHHHHHHHHHHHHHHHccCc
Confidence            99999999999999999999999999999      599994 99999999999999998876664

>TIGR00688 rarD rarD protein

Probab=99.79  E-value=4.6e-18  Score=137.12  Aligned_cols=131  Identities=11%  Similarity=0.007  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCC----cCCCCCHHH-HHHHHHHHHHHHHH
Q 042874           14 IIKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTT----VVPPFKFSL-LLRIFLLSSIGVLS   88 (167)
Q Consensus        14 ~~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~----~~~~~~~~~-~~~l~~lgl~g~~~   88 (167)
                      ++.+..+||.+.+++|. .+ ++||.++.++|+++|++++.++...+ ++++    +.++.++++ +..+...|++++.+
T Consensus         7 ~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   83 (256)
T TIGR00688         7 SLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLF-RQWAALIERLKRIQKRPLILSLLLCGLLIGFN   83 (256)
T ss_pred             HHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHH-cchHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence            46788899999999998 44 49999999999999998887776443 2211    101122233 34455666666889


Q ss_pred             HHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           89 QTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        89 ~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      +.+++++++++++++|+++.++.|+++++++++++|||++ +++++|++++++|+.++..
T Consensus        84 ~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~-~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        84 WWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERIS-RFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999995 9999999999999998764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.77  E-value=2.8e-17  Score=135.27  Aligned_cols=127  Identities=12%  Similarity=0.140  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHH
Q 042874           14 IIKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLSQTVG   92 (167)
Q Consensus        14 ~~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~~~   92 (167)
                      ++....+||.+++++|.+++ ++||.+++++|+.+|+++++++...+  |++.   .+++++.....+|.++ +.++.++
T Consensus        13 ~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~--~~~~---~~~~~~~~~~~~g~~~~~~~~~~~   86 (292)
T PRK11272         13 LFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR--GHPL---PTLRQWLNAALIGLLLLAVGNGMV   86 (292)
T ss_pred             HHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh--CCCC---CcHHHHHHHHHHHHHHHHHHHHHH
Confidence            46678899999999999987 59999999999999999998887653  2222   2567888889999998 8889999


Q ss_pred             HHHh-hccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           93 YIGI-AYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        93 ~~gl-~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      +++. +++++++++++.++.|+++.+++.+ +|||++ +++++|++++++|+.++..
T Consensus        87 ~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~-~~~~~~~~la~~Gv~ll~~  141 (292)
T PRK11272         87 TVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTR-KLEWLGIAIGLAGIVLLNS  141 (292)
T ss_pred             HHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCc-hhHHHHHHHHHHhHHHHhc
Confidence            9999 9999999999999999999999986 699995 9999999999999988754

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.75  E-value=1.8e-17  Score=118.08  Aligned_cols=124  Identities=20%  Similarity=0.271  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhh
Q 042874           19 KAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLSQTVGYIGIA   97 (167)
Q Consensus        19 ~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~~~~~gl~   97 (167)
                      .+||.+.++.|...++ .||....++|+..+++ ++++.... +++.. ...+.+++......|.++ ...+.+++++++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLIL-GRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhh-ccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            3699999999999876 9999999999999997 66655554 33332 456788889999999998 999999999999


Q ss_pred             ccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHH
Q 042874           98 YSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSK  147 (167)
Q Consensus        98 ~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~  147 (167)
                      +++++.++.+.++.|+++.++++++++|+++ +.+++|+++++.|+++++
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~-~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPS-WRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999995 999999999999998864

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.75  E-value=3.5e-17  Score=134.99  Aligned_cols=129  Identities=8%  Similarity=-0.042  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCc-CCC-CCHHHHHHHHHHHHHH-HHHHHH
Q 042874           15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTV-VPP-FKFSLLLRIFLLSSIG-VLSQTV   91 (167)
Q Consensus        15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~-~~~-~~~~~~~~l~~lgl~g-~~~~~~   91 (167)
                      +.+..+||.+++++|.. . ++||.++.++|+++|.+++.++...+ ++... ..+ .+++++. ....+.++ +.++.+
T Consensus        14 l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   89 (296)
T PRK15430         14 LAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSIC-RQWSYLKTLIQTPQKIF-MLAVSAVLIGGNWLL   89 (296)
T ss_pred             HHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHcCHHHHH-HHHHHHHHHHHHHHH
Confidence            56778999999999985 4 59999999999999998888876553 21110 000 1234433 34477777 899999


Q ss_pred             HHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           92 GYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        92 ~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      +++|++++++++++++.++.|+++.+++++++|||++ +++++|++++++|+.++..
T Consensus        90 ~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~-~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         90 FIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFR-RMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999995 9999999999999998764

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.73  E-value=8.3e-17  Score=132.74  Aligned_cols=129  Identities=16%  Similarity=0.173  Sum_probs=103.8

Q ss_pred             cchhhH--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-
Q 042874            9 DEKDDI--IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-   85 (167)
Q Consensus         9 ~~k~~~--~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-   85 (167)
                      +.|+++  +.++.+||++++.+|.++++ +||..++++|+.+|++++.++.    .+++    .+++ ++.....+.++ 
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~----~~~~----~~~~-~~~~~~~~~l~~   71 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV----GFPR----LRQF-PKRYLLAGGLLF   71 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc----cccc----cccc-cHHHHHHHhHHH
Confidence            456664  56788999999999999875 9999999999999999988762    1111    1112 22334556667 


Q ss_pred             HHHHHHHHHHhhc----cchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           86 VLSQTVGYIGIAY----SSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        86 ~~~~~~~~~gl~~----tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      +.++.+++.|++|    +++++++++.++.|+++.+++++++|||++ +++++|++++++|+.++..
T Consensus        72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~-~~~~~g~~l~~~Gv~li~~  137 (295)
T PRK11689         72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKAN-WLLIPGLLLALAGVAWVLG  137 (295)
T ss_pred             HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHhHhheec
Confidence            8888888888764    578899999999999999999999999995 9999999999999988864

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.72  E-value=1.7e-16  Score=127.31  Aligned_cols=118  Identities=14%  Similarity=0.107  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 042874           21 IRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLSQTVGYIGIAYS   99 (167)
Q Consensus        21 wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~~~~~gl~~t   99 (167)
                      ||.+++.+|.++++..||....+.|++.+.+++.++...   +  .    +++++......|.++ +.++.+++.|++|+
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~---~--~----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~   71 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR---R--P----PLKRLLRLLLLGALQIGVFYVLYFVAVKRL   71 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh---c--c----CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            899999999999877999999999999998888776432   2  1    345677888999999 99999999999999


Q ss_pred             chHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874          100 SPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus       100 sa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      ++++++++.++.|+++.+++.+++|||++ +++++|++++++|+.++..
T Consensus        72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~-~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        72 PVGEAALLLYLAPLYVTLLSDLMGKERPR-KLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             ChhhhHHHHhhhHHHHHHHHHHHccCCCc-HHHHHHHHHHHHhHHhhcc
Confidence            99999999999999999999999999995 9999999999999988764

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.69  E-value=1.6e-15  Score=125.24  Aligned_cols=122  Identities=10%  Similarity=0.038  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHH
Q 042874           14 IIKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLSQTVG   92 (167)
Q Consensus        14 ~~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~~~   92 (167)
                      .+++..+||.+++++|.++++ +||..++++|+.++++.++++.  + .+ +.    +   +..+...|++. ..++.++
T Consensus         9 ~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~--~-~~-~~----~---~~~~~~~g~~~~~~~~~~~   76 (299)
T PRK11453          9 ALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFV--A-RP-KV----P---LNLLLGYGLTISFGQFAFL   76 (299)
T ss_pred             HHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh--c-CC-CC----c---hHHHHHHHHHHHHHHHHHH
Confidence            366788999999999999975 9999999999999887766553  1 11 11    1   22345567766 6677788


Q ss_pred             HHHhhc-cchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           93 YIGIAY-SSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        93 ~~gl~~-tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      +.+++| .++++++++.++.|+++.+++++++|||++ +++++|++++++|+.++..
T Consensus        77 ~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~-~~~~~~~~l~~~Gv~ll~~  132 (299)
T PRK11453         77 FCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQ-GKQLAGIALAIFGVLVLIE  132 (299)
T ss_pred             HHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHhHHHhcc
Confidence            899998 588999999999999999999999999995 9999999999999988863

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.61  E-value=6.3e-14  Score=115.60  Aligned_cols=127  Identities=10%  Similarity=0.034  Sum_probs=104.7

Q ss_pred             HHHHHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042874           16 KQIKAI----RNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTV   91 (167)
Q Consensus        16 ~~~~~w----g~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~   91 (167)
                      ..+..|    .+..+.-|+++++--+|..++++|+.++++.+.+. +.. ..+++ ++.++++|+.++.+|++++.++.+
T Consensus         5 ~~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~-~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~   81 (302)
T TIGR00817         5 LLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSS-GLPKR-LKISSALLKLLLPVAIVHTIGHVT   81 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHh-CCCCC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            344555    33446789999764689999999999998776655 211 12222 456789999999999999777899


Q ss_pred             HHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHH
Q 042874           92 GYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTS  146 (167)
Q Consensus        92 ~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li  146 (167)
                      .++|++|+++++++++.+++|+++.++++++++||++ +++++|++++++|+.+.
T Consensus        82 ~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~-~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        82 SNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFP-STLWLSLLPIVGGVALA  135 (302)
T ss_pred             HHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999995 99999999999999765

specificities overlap.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.55  E-value=4.2e-13  Score=107.63  Aligned_cols=129  Identities=17%  Similarity=0.189  Sum_probs=108.8

Q ss_pred             chhhH--HHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH
Q 042874           10 EKDDI--IKQIKAIRNLEQLFKAASSKGLS--YYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG   85 (167)
Q Consensus        10 ~k~~~--~~~~~~wg~~~i~~K~al~~~~~--p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g   85 (167)
                      .++++  +.+..+|+.+.+..|...++ .+  +..+..+|+.++++++.|+.+.. ++..   ..+.++|..++.+|+++
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFL-GPNP---QALSLQWGALLYLGLIG  201 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhc-CCCC---CcchHHHHHHHHHHHHH
Confidence            45664  56778999999999998754 56  45566678999999999887764 3222   23677888899999999


Q ss_pred             -HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHH
Q 042874           86 -VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTL  144 (167)
Q Consensus        86 -~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~  144 (167)
                       ...+.+|++++++++++.++.+.++.|+++.++++++++|+++ ..+++|..+.+.|++
T Consensus       202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~-~~~~~G~~li~~g~~  260 (260)
T TIGR00950       202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLS-LPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhcC
Confidence             8999999999999999999999999999999999999999995 999999999999873

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.53  E-value=6.8e-13  Score=112.27  Aligned_cols=128  Identities=13%  Similarity=0.052  Sum_probs=103.1

Q ss_pred             HHHHHHHH----HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCC--CHHHHHHHHHHHHHH-
Q 042874           14 IIKQIKAI----RNLEQLFKAASSKGLS-YYVFVGYSYPLATLALLPLIFIFPSTTTVVPPF--KFSLLLRIFLLSSIG-   85 (167)
Q Consensus        14 ~~~~~~~w----g~~~i~~K~al~~~~~-p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~--~~~~~~~l~~lgl~g-   85 (167)
                      ....+..|    ..+.+..|.++++ +| |+.++.+|+++++++...+...  ..+++ ++.  .+++++.++.+|+++ 
T Consensus        50 ~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~--~~~~~-~~~~~~~~~~~~llp~gl~~~  125 (350)
T PTZ00343         50 LALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWAT--GFRKI-PRIKSLKLFLKNFLPQGLCHL  125 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHh--CCCCC-CCCCCHHHHHHHHHHHHHHHH
Confidence            34555566    3355789999976 89 9999999999998766554332  22222 333  346889999999999 


Q ss_pred             HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHH
Q 042874           86 VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSK  147 (167)
Q Consensus        86 ~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~  147 (167)
                      .. +...+.|+++++++.+.++.++.|++++++++++++||++ +++++|++++++|+.+.+
T Consensus       126 ~~-~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s-~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        126 FV-HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLN-LYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HH-HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHhee
Confidence            55 5557799999999999999999999999999999999995 999999999999999876

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.53  E-value=7e-14  Score=101.85  Aligned_cols=130  Identities=13%  Similarity=0.046  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042874           15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYI   94 (167)
Q Consensus        15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~   94 (167)
                      ++....||...+++|+.++ ++||..-++.|......++..+.+.. ++.+.+...++|.|..+.+.|+-+...-.+||.
T Consensus         9 LLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~-g~~~~~~~~~~k~~lflilSGla~glswl~Yf~   86 (140)
T COG2510           9 LLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVT-GNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFR   86 (140)
T ss_pred             HHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhc-CceecccccCcceehhhhHHHHHHHHHHHHHHH
Confidence            4455688999999999996 59999999999999998888887775 433322346788999999999877889999999


Q ss_pred             HhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHH
Q 042874           95 GIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSK  147 (167)
Q Consensus        95 gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~  147 (167)
                      +++.-.++...-+..+.|+++.++++++++||++ ..+++|+++..+|+++++
T Consensus        87 ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls-~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          87 ALKKGKASRVVPLDKTSVVLAVLLSILFLGERLS-LPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHhcCCcceEEEcccccHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhCeeeEe
Confidence            9999999999999999999999999999999995 999999999999998765

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.52  E-value=7.5e-13  Score=108.34  Aligned_cols=128  Identities=11%  Similarity=0.049  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHHH
Q 042874           15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLSQTVGY   93 (167)
Q Consensus        15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~~~~   93 (167)
                      +++..+|+...+.+|...++ -++  ..++++..+++++.|+...+..+..+ +.. +++++.....+.++ ..++.+++
T Consensus         7 ~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~   81 (281)
T TIGR03340         7 VFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGW-SRL-PATFWLLLAISAVANMVYFLGLA   81 (281)
T ss_pred             HHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCC-CCc-chhhHHHHHHHHHHHHHHHHHHH
Confidence            45777999999999976654 344  35888888888888877653012222 222 34445555666666 99999999


Q ss_pred             HHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           94 IGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        94 ~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      .|++++++++++.+.++.|+++.++++++++||++ +++++|+.+++.|+.++..
T Consensus        82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~-~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        82 QAYHHADVGLVYPLARSSPLLVAIWATLTLGETLS-PLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999995 9999999999999998764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.49  E-value=8.4e-13  Score=108.81  Aligned_cols=121  Identities=12%  Similarity=0.035  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 042874           14 IIKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGY   93 (167)
Q Consensus        14 ~~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~   93 (167)
                      +..+..+|+.+.+++|.++++ +||..+.++|+.+|+++++++...   ++   .+.++++++..+..|++....+.+++
T Consensus        17 ~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~---~~---~~~~~~~~~~~~~~g~~~~~~~~~~~   89 (293)
T PRK10532         17 LLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP---WR---LRFAKEQRLPLLFYGVSLGGMNYLFY   89 (293)
T ss_pred             HHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH---Hh---ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888999999999999986 999999999999999998876432   11   12356788888888887766778899


Q ss_pred             HHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           94 IGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        94 ~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      ++++|++++.++++.++.|+++.+++    +||+ .  +..++.++++|+.++..
T Consensus        90 ~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~-~--~~~~~~i~~~Gv~li~~  137 (293)
T PRK10532         90 LSIQTVPLGIAVALEFTGPLAVALFS----SRRP-V--DFVWVVLAVLGLWFLLP  137 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHh----cCCh-H--HHHHHHHHHHHHheeee
Confidence            99999999999999999999998876    3555 2  34677889999988753

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.49  E-value=2.5e-13  Score=97.32  Aligned_cols=106  Identities=20%  Similarity=0.257  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHHHccCCCCc-CCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHH
Q 042874           43 GYSYPLATLALLPLIFIFPSTTTV-VPPFKFSLLLRIFLLSSIG-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAI  120 (167)
Q Consensus        43 ~~R~~~A~liL~~~~~~~~~~~~~-~~~~~~~~~~~l~~lgl~g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~  120 (167)
                      .+|+..+.+++..+...+ ++.+. ....+++++.++...|+++ ..++.++++|+++++ +..+.+.+++|+++.+++.
T Consensus         2 a~r~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~   79 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIR-GRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW   79 (113)
T ss_pred             HHHHHHHHHHHHHHHHHH-ccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence            689999999998887764 32211 0223446677788889999 799999999999999 4888999999999999999


Q ss_pred             HHhhcccCchhHHHHHHHHHHHHHHHHhcCC
Q 042874          121 LFSCLKMMSWIEIIIIIIINNDTLTSKMDKA  151 (167)
Q Consensus       121 ~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g  151 (167)
                      +++|||++ ++++.|++++++|+.++...+.
T Consensus        80 ~~~~er~~-~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   80 LFFKERLS-PRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HHhcCCCC-HHHHHHHHHHHHHHHHHhhhhc
Confidence            99999995 9999999999999999986443

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.45  E-value=1.4e-11  Score=101.56  Aligned_cols=132  Identities=11%  Similarity=0.062  Sum_probs=108.0

Q ss_pred             hhH--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHH
Q 042874           12 DDI--IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLS   88 (167)
Q Consensus        12 ~~~--~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~   88 (167)
                      |++  +.+..+|+.+.+..|...+ +.+|...... ..++++++.|+.... .. .  ...+...|..++.+|+++ .+.
T Consensus       149 G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~-~~-~--~~~~~~~~~~~l~lgv~~t~~~  222 (293)
T PRK10532        149 GAALALGAGACWAIYILSGQRAGA-EHGPATVAIG-SLIAALIFVPIGALQ-AG-E--ALWHWSILPLGLAVAILSTALP  222 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHH-HHHHHHHHHHHHHHc-cC-c--ccCCHHHHHHHHHHHHHHHHHH
Confidence            553  5577899999999999865 4788877544 466677777776653 22 1  223455666678999999 899


Q ss_pred             HHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874           89 QTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK  150 (167)
Q Consensus        89 ~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~  150 (167)
                      +.+|++++++.+|+.++.+.++.|+++.++++++++|+++ ..+++|.++.+.|++......
T Consensus       223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~-~~~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLT-LIQWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999995 999999999999999987654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.41  E-value=2.1e-11  Score=100.35  Aligned_cols=134  Identities=11%  Similarity=-0.002  Sum_probs=110.8

Q ss_pred             chhhH--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-H
Q 042874           10 EKDDI--IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-V   86 (167)
Q Consensus        10 ~k~~~--~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~   86 (167)
                      .+|++  +++..+|+.+.+..|..- . -++....+++..+++.++.++.... +.... ...+.++|..+.++|+++ .
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~i~~l~i~~s~  224 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLS-GERLT-ALPTLSGFLALGYLAVFGSI  224 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHc-CCccc-ccCCHHHHHHHHHHHHHHHH
Confidence            35664  456779999999999964 3 2456677899999999888877653 22211 123567888999999999 8


Q ss_pred             HHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           87 LSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        87 ~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      +.+.+|++++++.++++++.+.++.|++++++++++++|+++ ..+++|.++.+.|+++...
T Consensus       225 ~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t-~~~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        225 IAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLS-PIEWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999995 9999999999999998865

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.33  E-value=1.1e-10  Score=93.81  Aligned_cols=131  Identities=19%  Similarity=0.256  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHHH
Q 042874           15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLSQTVGY   93 (167)
Q Consensus        15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~~~~   93 (167)
                      +.....|+.+....|...++..++....+.|+..+..++.+....  ++... . ...+++.+....+.++ ..++.+++
T Consensus        13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~   88 (292)
T COG0697          13 LLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL--EPRGL-R-PALRPWLLLLLLALLGLALPFLLLF   88 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh--hcccc-c-ccccchHHHHHHHHHHHHHHHHHHH
Confidence            445568999999999987654677777788999998885544332  21111 1 1222255677888888 99999999


Q ss_pred             HHhhccchHHHHHHhhhHHHHHHHHHH-HHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874           94 IGIAYSSPTLSAAITNTIPAFTFTLAI-LFSCLKMMSWIEIIIIIIINNDTLTSKMDK  150 (167)
Q Consensus        94 ~gl~~tsa~~asii~~l~Pv~~~ila~-~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~  150 (167)
                      .++++++++.++.+.++.|+++.+++. ++++||++ ++++.|+++++.|++++...+
T Consensus        89 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~Gv~lv~~~~  145 (292)
T COG0697          89 LALKYTSASVASLIIGLLPLFTALLAVLLLLGERLS-LLQILGILLALAGVLLILLGG  145 (292)
T ss_pred             HHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCc-HHHHHHHHHHHHhHHheecCC
Confidence            999999999999999999999999997 77799995 999999999999999987643

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.31  E-value=1.4e-10  Score=95.71  Aligned_cols=129  Identities=14%  Similarity=0.101  Sum_probs=100.0

Q ss_pred             hhH--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHH
Q 042874           12 DDI--IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQ   89 (167)
Q Consensus        12 ~~~--~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~   89 (167)
                      |++  +.+..+|+.+.+..|...+ +.+|.....   ..+++.+.+..... +...  ...+.+.|..+++.|+...+.+
T Consensus       157 G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~l~~~~~~~-~~~~--~~~~~~~~~~l~~~~~~t~~~~  229 (295)
T PRK11689        157 SYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALALWIKYFLS-PQPA--MVFSLPAIIKLLLAAAAMGFGY  229 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHHHHHHHHHh-cCcc--ccCCHHHHHHHHHHHHHHHHHH
Confidence            554  5678899999999999754 478876532   33444444433332 2111  2345677888887775338899


Q ss_pred             HHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           90 TVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        90 ~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      .+|++++++++|++++.+.++.|++..++++++++|+++ ..+++|.++.+.|+++...
T Consensus       230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~-~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLS-FSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHhHHHHhh
Confidence            999999999999999999999999999999999999995 9999999999999988765

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.30  E-value=2.2e-10  Score=97.41  Aligned_cols=132  Identities=11%  Similarity=0.002  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHccCCCCc---CCCCCHHHHHHHHHHHHHHHHHHH
Q 042874           15 IKQIKAIRNLEQLFKAASSKGLSY-YVFVGYSYPLATLALLPLIFIFPSTTTV---VPPFKFSLLLRIFLLSSIGVLSQT   90 (167)
Q Consensus        15 ~~~~~~wg~~~i~~K~al~~~~~p-~~l~~~R~~~A~liL~~~~~~~~~~~~~---~~~~~~~~~~~l~~lgl~g~~~~~   90 (167)
                      +.+..+|+.+.++.|..... .|| ...+++...++++.+.+..... ++...   ....+.. ...+++.|+...+.+.
T Consensus       195 l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~-~~~i~y~~i~t~lay~  271 (358)
T PLN00411        195 TIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVV-EKNNPSVWIIHFDIT-LITIVTMAIITSVYYV  271 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHH-ccCCcccceeccchH-HHHHHHHHHHHHHHHH
Confidence            44667899999999997764 544 4667787777777666555543 32211   0111222 3335556654466888


Q ss_pred             HHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874           91 VGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK  150 (167)
Q Consensus        91 ~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~  150 (167)
                      +|++++++.+|+.++++.++.|++++++++++++|+++ ..+++|.++.+.|+.+....+
T Consensus       272 lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt-~~~~iG~~LIl~Gv~l~~~~~  330 (358)
T PLN00411        272 IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLY-LGCLIGGILITLGFYAVMWGK  330 (358)
T ss_pred             HHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999995 999999999999999987643

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.27  E-value=6e-10  Score=91.99  Aligned_cols=136  Identities=9%  Similarity=0.080  Sum_probs=103.4

Q ss_pred             hhhH--HHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHccCCCCc----CCCCCHHHHHHHHHHH
Q 042874           11 KDDI--IKQIKAIRNLEQLFKAASSKG--LSYYVFVGYSYPLATLALLPLIFIFPSTTTV----VPPFKFSLLLRIFLLS   82 (167)
Q Consensus        11 k~~~--~~~~~~wg~~~i~~K~al~~~--~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~----~~~~~~~~~~~l~~lg   82 (167)
                      +||+  +.+..+|+.+.+..|...++.  .+......+-..++.+.+.+..... +....    ....+.++|..++++|
T Consensus       143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLIL-DGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHh-cCchhhhhhhccCCHHHHHHHHHHH
Confidence            5774  557779999999999965432  2233444555555544444333332 22110    0134677899999999


Q ss_pred             HHH-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           83 SIG-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        83 l~g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      +++ .+.+.+|+.++++.+|++++.+.++.|++..++++++++|+++ ..+++|.++.+.|+.+...
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~-~~~~iG~~lI~~gv~l~~~  287 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLT-GLQFLGAVLIMAGLYINVF  287 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHHHhc
Confidence            999 8999999999999999999999999999999999999999995 9999999999999987654

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.20  E-value=2.2e-10  Score=94.46  Aligned_cols=138  Identities=14%  Similarity=0.066  Sum_probs=103.5

Q ss_pred             hhhH--HHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCC--------CCHHHHHH-H
Q 042874           11 KDDI--IKQIKAIRNLEQLFKAASSK-GLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPP--------FKFSLLLR-I   78 (167)
Q Consensus        11 k~~~--~~~~~~wg~~~i~~K~al~~-~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~--------~~~~~~~~-l   78 (167)
                      .|++  +.+..+|+.+.+..|...++ +.||..+..+....+++.+.|+.... +.....+.        ........ .
T Consensus       145 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       145 AGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFIT-EGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHH-cchHHHHHHHHHhhcccCchHHHHHH
Confidence            3664  55778999999999997751 48999999999999999999987754 32110000        00001111 2


Q ss_pred             HHHHHHH-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874           79 FLLSSIG-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK  150 (167)
Q Consensus        79 ~~lgl~g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~  150 (167)
                      +..+... ...+.+++.++++++|+++++..++.|+++.++++++++|+++ ..+++|.+++++|+.+....+
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt-~~~~~G~~lil~Gv~l~~~~k  295 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKIS-PQQVFGTGIAIAGVFLYSRVK  295 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCc-hhHHHHHHHHHHHHHHHHHHh
Confidence            2333323 4445677899999999999999999999999999999999995 999999999999999987643

specificities overlap.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.12  E-value=3.4e-09  Score=89.35  Aligned_cols=128  Identities=16%  Similarity=0.201  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 042874           22 RNLEQLFKAASSKGLS-YYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSS  100 (167)
Q Consensus        22 g~~~i~~K~al~~~~~-p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~ts  100 (167)
                      .++...+...-+.|.+ |..-.++-+..-+++..+...+++.+++. .+..+++|+..+++|++-...+++.+.|++||+
T Consensus        26 ~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~-~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTs  104 (334)
T PF06027_consen   26 TGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKW-LKVLKRPWWKYFLLALLDVEANYLVVLAYQYTS  104 (334)
T ss_pred             HhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccc-hhhcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            5555556555555554 65555666655556666665554122222 233456788888899877889999999999999


Q ss_pred             hHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCC
Q 042874          101 PTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKA  151 (167)
Q Consensus       101 a~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g  151 (167)
                      .+.+.++..+.-.++++++++++|||.+ +.+++|++++++|+.++...+.
T Consensus       105 vtS~~lL~~~~i~~~~~LS~~fL~~ry~-~~~~~gv~i~i~Gv~lv~~sD~  154 (334)
T PF06027_consen  105 VTSVQLLDCTSIPFVMILSFIFLKRRYS-WFHILGVLICIAGVVLVVVSDV  154 (334)
T ss_pred             HhHHHhhhhhhhHHHHHHHHHHHHhhhh-HHHHHHHHHHHhhhhheeeecc
Confidence            9999999999999999999999999995 9999999999999988876543

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.08  E-value=4.5e-09  Score=86.73  Aligned_cols=131  Identities=13%  Similarity=0.022  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042874           14 IIKQIKAIRNLEQLFKAASSKG-LSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVG   92 (167)
Q Consensus        14 ~~~~~~~wg~~~i~~K~al~~~-~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~   92 (167)
                      .+++..+|+.+.+..|...++. .++.....+-..++...+.+....  ..... .......+..+...|+.+.+.+.++
T Consensus       154 ~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~t~i~~~~~  230 (296)
T PRK15430        154 ALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS--STSHM-GQNPMSLNLLLIAAGIVTTVPLLCF  230 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC--Ccccc-cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3566789999999999964321 233444455555554443332110  11000 1111222344445565448899999


Q ss_pred             HHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           93 YIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        93 ~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      ++++++.+|+.++.+.++.|++..++++++++|+++ ..+++|.++.+.|+.++..
T Consensus       231 ~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~-~~~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        231 TAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPG-ADKMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999995 9999999999999888765

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.08  E-value=5.1e-09  Score=85.90  Aligned_cols=139  Identities=13%  Similarity=0.000  Sum_probs=110.0

Q ss_pred             hhhH--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCc-CCCCCHHHHHHHHHHHHHHHH
Q 042874           11 KDDI--IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTV-VPPFKFSLLLRIFLLSSIGVL   87 (167)
Q Consensus        11 k~~~--~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~-~~~~~~~~~~~l~~lgl~g~~   87 (167)
                      ||.+  .++-..||..+...|.. + ..|+.++...|...+..+++.+....++++.. ....+++.+..+.+.++.-+.
T Consensus         7 ~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~   84 (293)
T COG2962           7 KGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGL   84 (293)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            5554  55777999999999995 4 49999999999999988877766654122211 011234455555555555577


Q ss_pred             HHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCCC
Q 042874           88 SQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKAA  152 (167)
Q Consensus        88 ~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g~  152 (167)
                      +-..|.++.+.-..-++|+=.+++|++.++++.+++|||++ +.|++.+.++.+||.......|+
T Consensus        85 nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls-~~Q~iAV~lA~~GV~~~~~~~g~  148 (293)
T COG2962          85 NWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLS-RLQWIAVGLAAAGVLIQTWLLGS  148 (293)
T ss_pred             HHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHcCC
Confidence            88899999999999999999999999999999999999995 99999999999999998776555

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.08  E-value=7.6e-10  Score=90.57  Aligned_cols=130  Identities=15%  Similarity=0.067  Sum_probs=91.6

Q ss_pred             hhh--HHHHHHHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHH
Q 042874           11 KDD--IIKQIKAIRNLEQLFKAASSKGLSYY----VFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSI   84 (167)
Q Consensus        11 k~~--~~~~~~~wg~~~i~~K~al~~~~~p~----~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~   84 (167)
                      +++  .+.+..+|+.+.+..|...+ +.+|.    ....+.+...++.+.+..... +++.  .......+..+...+.+
T Consensus       144 ~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~  219 (281)
T TIGR03340       144 KAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKR-HGRS--MFPYARQILPSATLGGL  219 (281)
T ss_pred             hHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHH-hccc--hhhhHHHHHHHHHHHHH
Confidence            455  25567789999999998643 34443    233333333322222222221 1111  11123345566777777


Q ss_pred             H-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHH
Q 042874           85 G-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLT  145 (167)
Q Consensus        85 g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~l  145 (167)
                      + ...+.+|++++++.+++.++.+.++.|++..++++++++|+++ ..+++|.++.+.|+.+
T Consensus       220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~-~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWY-LTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHhHHh
Confidence            7 8899999999999999999999999999999999999999995 9999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.99  E-value=3.7e-08  Score=72.99  Aligned_cols=130  Identities=18%  Similarity=0.239  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCC---CC-------CHHHHHHH
Q 042874           15 IKQIKAIRNLEQLFKAASSK------GLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVP---PF-------KFSLLLRI   78 (167)
Q Consensus        15 ~~~~~~wg~~~i~~K~al~~------~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~---~~-------~~~~~~~l   78 (167)
                      ..+..+.+...+..|..+++      ..+|.++..+-...+++++.|..... ++.+...   ..       ..+.+..+
T Consensus         6 l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (153)
T PF03151_consen    6 LASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLL-EGPQLSSFFSEIFGEELSSDPNFIFLL   84 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHhhhhhhcchHHHHHHH
Confidence            34556778899999998876      69999999999999999999998876 4322100   00       22445556


Q ss_pred             HHHHHHHHHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHH
Q 042874           79 FLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTS  146 (167)
Q Consensus        79 ~~lgl~g~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li  146 (167)
                      +..|+++...+...+..++++||...++..+.-.+.+.+++.++++|+++ ..+++|+++++.|+...
T Consensus        85 ~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t-~~~~~G~~l~~~G~~~Y  151 (153)
T PF03151_consen   85 ILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPIT-PLQIIGIVLALVGVLLY  151 (153)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCC-HHHHHHHHHHHHHHhee
Confidence            66777778899999999999999999999999999999999999999995 99999999999999764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.94  E-value=7.7e-08  Score=81.50  Aligned_cols=131  Identities=11%  Similarity=0.015  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCC-------CCCHHHHHHHHHH
Q 042874           15 IKQIKAIRNLEQLFKAASSK------GLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVP-------PFKFSLLLRIFLL   81 (167)
Q Consensus        15 ~~~~~~wg~~~i~~K~al~~------~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~-------~~~~~~~~~l~~l   81 (167)
                      ..+..+|+.+.+..|..+++      ..++..+..+-..+++++++|+.... +......       ..+...+..++. 
T Consensus       200 l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~l~-  277 (350)
T PTZ00343        200 MLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFF-EGKKWVPVWTNYTANMTNYTKGIIIF-  277 (350)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhhhcccccchHHHHH-
Confidence            44677999999999998753      26677777777889999999987744 3211000       000111112222 


Q ss_pred             HHHH-HHHHHHH----HHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           82 SSIG-VLSQTVG----YIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        82 gl~g-~~~~~~~----~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      .++. .+.+.++    |.++++++|.++++..++-|+++.++++++++|+++ ..+++|.++++.|+.+.+.
T Consensus       278 ~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt-~~~~iG~~lii~Gv~lYs~  348 (350)
T PTZ00343        278 KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVT-LLGYLGMAVAILGALLYSL  348 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCc-hHhHHHHHHHHHHHHHHhh
Confidence            2222 4444444    469999999999999999999999999999999995 9999999999999998765

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.93  E-value=1.3e-07  Score=75.81  Aligned_cols=131  Identities=16%  Similarity=0.125  Sum_probs=103.0

Q ss_pred             hhhH--HHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-H
Q 042874           11 KDDI--IKQIKAIRNLEQLFKAASSKGLSYYVFVG-YSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-V   86 (167)
Q Consensus        11 k~~~--~~~~~~wg~~~i~~K~al~~~~~p~~l~~-~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~   86 (167)
                      ++++  +.+..+|+.+.+..|...  ..++..... +.+..+.....+....  .++ .  ..+.+++..+...|+++ .
T Consensus       154 ~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~--~~~~~~~~~~~~~g~~~~~  226 (292)
T COG0697         154 LGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFLS--GFG-A--PILSRAWLLLLYLGVFSTG  226 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHhc--ccc-c--cCCHHHHHHHHHHHHHHHH
Confidence            4554  557779999999999876  367777777 5554333333333221  111 1  34578899999999999 7


Q ss_pred             HHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhc
Q 042874           87 LSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMD  149 (167)
Q Consensus        87 ~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~  149 (167)
                      ..+.+++++++..+++.++.+..+.|++..++++++++|+++ ..+++|.++.+.|+.+....
T Consensus       227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~-~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLS-PAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHHhcc
Confidence            899999999999999999999999999999999999999995 99999999999999888653

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.87  E-value=5.3e-08  Score=80.44  Aligned_cols=126  Identities=16%  Similarity=0.123  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCC-HHHHHHHHHHHHHHHHHHHHHH
Q 042874           15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFK-FSLLLRIFLLSSIGVLSQTVGY   93 (167)
Q Consensus        15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~-~~~~~~l~~lgl~g~~~~~~~~   93 (167)
                      +.+..+||.+.+..|...  +.+|.++.  |..++++++..+.... + +   ++.+ ++.+..-++.|.+=...|.+|+
T Consensus         7 lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~-~-~---~~~~~~~~~~~g~l~G~~w~ig~~~~~   77 (290)
T TIGR00776         7 LIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIF-V-L---PEFWALSIFLVGLLSGAFWALGQINQF   77 (290)
T ss_pred             HHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHH-h-C---CcccccHHHHHHHHHHHHHHhhhhhHH
Confidence            346679999999999964  68887775  7888888776655543 2 1   1112 2222222233332267889999


Q ss_pred             HHhhccchHHHHHHhh-hHHHHHHHHHHHHhhcccCchhH----HHHHHHHHHHHHHHHhcC
Q 042874           94 IGIAYSSPTLSAAITN-TIPAFTFTLAILFSCLKMMSWIE----IIIIIIINNDTLTSKMDK  150 (167)
Q Consensus        94 ~gl~~tsa~~asii~~-l~Pv~~~ila~~~~~Er~~~~~~----~~Gi~l~~~Gv~li~~~~  150 (167)
                      .++++++.+.|-.+.+ +.|+++.+.+.+++||+.+ +++    ++|+++++.|+.++...+
T Consensus        78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t-~~~~~~~~~g~~l~l~G~~l~~~~~  138 (290)
T TIGR00776        78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWST-SIQTLLGLLALILIIIGVYLTSRSK  138 (290)
T ss_pred             HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHhHheEEecc
Confidence            9999999999998888 8899999999999999994 888    999999999998876543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.78  E-value=1e-07  Score=68.43  Aligned_cols=69  Identities=6%  Similarity=-0.128  Sum_probs=62.7

Q ss_pred             HHHHHHH-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           79 FLLSSIG-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        79 ~~lgl~g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      ...++++ ...++++..++++.+.+.|..+.++.|+++.++++++++||++ .+|++|+.+.++|++++..
T Consensus        40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls-~~~~~Gi~lii~Gv~~i~~  109 (111)
T PRK15051         40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVS-PRHWCGVAFIIGGIVILGS  109 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHhc
Confidence            3445577 8899999999999999999999999999999999999999995 9999999999999988753

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.67  E-value=2.3e-09  Score=87.32  Aligned_cols=122  Identities=14%  Similarity=0.115  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042874           20 AIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYS   99 (167)
Q Consensus        20 ~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~t   99 (167)
                      .+.++.++.+..++  .+|.+....|++.-.++-.|...++ ......|+ ..|  .++++=|+.|+......|++++|.
T Consensus        48 ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~-~~~v~gp~-g~R--~~LiLRg~mG~tgvmlmyya~~~m  121 (346)
T KOG4510|consen   48 FFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYY-MQPVIGPE-GKR--KWLILRGFMGFTGVMLMYYALMYM  121 (346)
T ss_pred             HHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEE-eeeeecCC-CcE--EEEEeehhhhhhHHHHHHHHHhhc
Confidence            33555555555553  6999999999877777777765553 22111111 122  234566777744455678899999


Q ss_pred             chHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874          100 SPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus       100 sa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      +-+.|++|+...|++|.+++++++|||. ++.+.+|..+.+.||++++.
T Consensus       122 slaDA~vItFssPvft~ifaw~~LkE~~-t~~eaL~s~itl~GVVLIvR  169 (346)
T KOG4510|consen  122 SLADAVVITFSSPVFTIIFAWAFLKEPF-TKFEALGSLITLLGVVLIVR  169 (346)
T ss_pred             chhheEEEEecChHHHHHHHHHHHcCCC-cHHHHHHHHHhhheEEEEec
Confidence            9999999999999999999999999999 59999999999999999875

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.56  E-value=1.7e-06  Score=71.49  Aligned_cols=122  Identities=13%  Similarity=-0.074  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH----HHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHH
Q 042874           15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYP----LATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQT   90 (167)
Q Consensus        15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~----~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~   90 (167)
                      +.+-..|+.+.+..|..   +.||.+.++....    .+.+++.+.   + +.  + +. ..+.....++.|++-.+.+.
T Consensus       158 l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~--~-~~-~~~~~~~~~~~Gi~~~ia~~  226 (290)
T TIGR00776       158 LMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH---I-LA--K-PL-KKYAILLNILPGLMWGIGNF  226 (290)
T ss_pred             HHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH---h-cc--c-ch-HHHHHHHHHHHHHHHHHHHH
Confidence            44556889999999975   3799988555554    444343332   1 11  1 22 23334444457776677788


Q ss_pred             HHHHHhh-ccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHH----HHHHHHHHHHHHHHh
Q 042874           91 VGYIGIA-YSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEI----IIIIIINNDTLTSKM  148 (167)
Q Consensus        91 ~~~~gl~-~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~----~Gi~l~~~Gv~li~~  148 (167)
                      +|+.+.+ +.+++.++++.+..|+...+.+.++++|+.+ ++++    +|.++.+.|+.+...
T Consensus       227 ~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~-~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       227 FYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKT-KREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCC-cceeehhHHHHHHHHHHHHHHhc
Confidence            8999999 9999999999999999999999999999995 8999    999999999988764

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.54  E-value=2.5e-06  Score=69.21  Aligned_cols=124  Identities=15%  Similarity=0.076  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHHH
Q 042874           15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLSQTVGY   93 (167)
Q Consensus        15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~~~~   93 (167)
                      ..+-.+|+.|-+.+|.+-+. .+--.-...-+.+|+++.+|+....  -..  .-.++.-...-+..|+++ .+++.+..
T Consensus       154 l~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~--ag~--~l~~p~ll~laLgvavlSSalPYsLEm  228 (292)
T COG5006         154 LGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQ--AGP--ALFSPSLLPLALGVAVLSSALPYSLEM  228 (292)
T ss_pred             HHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhh--cch--hhcChHHHHHHHHHHHHhcccchHHHH
Confidence            44667999999999998643 4556667788999999999997753  211  123455566667888999 99999999


Q ss_pred             HHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHH
Q 042874           94 IGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTL  144 (167)
Q Consensus        94 ~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~  144 (167)
                      .+++..++..-++++++.|.+.++.++++++|++ +..||+|+...++++.
T Consensus       229 iAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~l-s~~qwlaI~~ViaAsa  278 (292)
T COG5006         229 IALRRLPARTFGTLLSLEPALAALSGLIFLGETL-TLIQWLAIAAVIAASA  278 (292)
T ss_pred             HHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999 5999999988887664

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.51  E-value=1.3e-06  Score=64.32  Aligned_cols=70  Identities=14%  Similarity=0.092  Sum_probs=64.6

Q ss_pred             HHHHHHHH-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHH--HhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           78 IFLLSSIG-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAIL--FSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        78 l~~lgl~g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~--~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      .+++|+.+ ...+.+|..++++.+++.|.-+.+..|+++.+.++.  +++|+++ ..|++|+++.++|++++..
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls-~~~~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFS-LKKTLGVACIMLGVWLINL  122 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHHhcc
Confidence            57889999 999999999999999999999999999988888874  8999995 9999999999999999875

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.42  E-value=2.4e-05  Score=64.82  Aligned_cols=125  Identities=13%  Similarity=0.104  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHh-CCCC--HHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042874           23 NLEQLFKAASS-KGLS--YYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYS   99 (167)
Q Consensus        23 ~~~i~~K~al~-~~~~--p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~t   99 (167)
                      .+-+.-+.... ++..  |..+++.+++..+++-.+.....  +++   +.++..+...+..+++-.+...+-+.+++|.
T Consensus        14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i   88 (303)
T PF08449_consen   14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLF--KFP---KSRKIPLKKYAILSFLFFLASVLSNAALKYI   88 (303)
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhc--ccc---CCCcChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34455555443 3344  89999999999988776665543  211   2234446677778877788889999999999


Q ss_pred             chHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCCCC
Q 042874          100 SPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKAAS  153 (167)
Q Consensus       100 sa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g~~  153 (167)
                      |-..-.++-+..|+.+++++.+++++|.+ +++++++++..+|+.+....+.+.
T Consensus        89 ~~p~~~~~ks~~~i~vmi~~~l~~~k~y~-~~~~~~v~li~~Gv~~~~~~~~~~  141 (303)
T PF08449_consen   89 SYPTQIVFKSSKPIPVMILGVLILGKRYS-RRQYLSVLLITIGVAIFTLSDSSS  141 (303)
T ss_pred             ChHHHHHHhhhHHHHHHHHHHHhcCcccc-HHHHHHHHHHHhhHheeeeccccc
Confidence            99999999999999999999999999995 999999999999999987755443

; GO: 0055085 transmembrane transport

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.25  E-value=2.6e-05  Score=65.94  Aligned_cols=138  Identities=13%  Similarity=0.089  Sum_probs=102.1

Q ss_pred             chhhH--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCC--CHHHHHHHHHHHHHH
Q 042874           10 EKDDI--IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPF--KFSLLLRIFLLSSIG   85 (167)
Q Consensus        10 ~k~~~--~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~--~~~~~~~l~~lgl~g   85 (167)
                      -|||+  +.+..+||.+.+.-|....+ .|+..+...=-+++.++..+..... |++.. ...  +.+....++.. .++
T Consensus       167 i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~il-e~~~i-~~~~w~~~~~~~~v~~-~~~  242 (334)
T PF06027_consen  167 ILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAIL-ERSGI-ESIHWTSQVIGLLVGY-ALC  242 (334)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHhe-ehhhh-hccCCChhhHHHHHHH-HHH
Confidence            36785  45666899999999998875 7888877777777777777666655 55443 223  33333322222 223


Q ss_pred             -HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCCC
Q 042874           86 -VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKAA  152 (167)
Q Consensus        86 -~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g~  152 (167)
                       ...+.+....+++++|+...+=.-+...+.+++..++.+++++ +..++|.++.+.|.++....+.+
T Consensus       243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~-~ly~~af~lIiiG~vvy~~~~~~  309 (334)
T PF06027_consen  243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFS-WLYILAFALIIIGFVVYNLAESP  309 (334)
T ss_pred             HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCcccc-HHHHHHHHHHHHHhheEEccCCc
Confidence             5666677889999999988777778899999999999999995 99999999999999998764433

Some of the sequences in this family are annotated as putative membrane proteins.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.05  E-value=4.4e-05  Score=61.87  Aligned_cols=80  Identities=9%  Similarity=0.227  Sum_probs=71.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874           71 KFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK  150 (167)
Q Consensus        71 ~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~  150 (167)
                      ++++...+.+=+++-+..+.+.|.++++.+|+.-.++.++-.++|++++++++|+|+ +++||+++.+.+.|+.++....
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~l-s~~qW~aL~lL~~Gv~lv~~~~   91 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRL-SRRQWLALFLLVAGVVLVQLSS   91 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHccc-chhhHHHHHHHHHHHheeecCC
Confidence            456777777777777889999999999999999999999999999999999999999 5999999999999999876543


Q ss_pred             C
Q 042874          151 A  151 (167)
Q Consensus       151 g  151 (167)
                      .
T Consensus        92 ~   92 (244)
T PF04142_consen   92 S   92 (244)
T ss_pred             c
Confidence            3

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>TIGR00688 rarD rarD protein

Probab=98.01  E-value=0.00026  Score=56.92  Aligned_cols=104  Identities=12%  Similarity=0.007  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042874           15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYI   94 (167)
Q Consensus        15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~   94 (167)
                      +++..+|+.+.+..|..-+.  ++......... ...+..+..... ...........++|..++.+|+++...+.++++
T Consensus       152 l~aa~~~a~~~i~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~~~  227 (256)
T TIGR00688       152 LVLAFSFTAYGLIRKALKNT--DLAGFCLETLS-LMPVAIYYLLQT-DFATVQQTNPFPIWLLLVLAGLITGTPLLAFVI  227 (256)
T ss_pred             HHHHHHHHHHHHHHhhcCCC--CcchHHHHHHH-HHHHHHHHHHHh-ccCcccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            56777999999999996432  33332222221 111111111111 111000111235788888888876789999999


Q ss_pred             HhhccchHHHHHHhhhHHHHHHHHHHHH
Q 042874           95 GIAYSSPTLSAAITNTIPAFTFTLAILF  122 (167)
Q Consensus        95 gl~~tsa~~asii~~l~Pv~~~ila~~~  122 (167)
                      |+++.+|+.++.+.++.|+++.+++.+.
T Consensus       228 a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       228 AANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998753

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.99  E-value=0.00035  Score=57.83  Aligned_cols=134  Identities=16%  Similarity=0.102  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHH--ccCCCCc--CCCCCHHHHHHHHHHHHHHHHHHH
Q 042874           16 KQIKAIRNLEQLFKAASS-KGLSYYVFVGYSYPLATLALLPLIFI--FPSTTTV--VPPFKFSLLLRIFLLSSIGVLSQT   90 (167)
Q Consensus        16 ~~~~~wg~~~i~~K~al~-~~~~p~~l~~~R~~~A~liL~~~~~~--~~~~~~~--~~~~~~~~~~~l~~lgl~g~~~~~   90 (167)
                      ....+-|...+..+..++ .+.+|.+..++-..++.+++.+....  .++-.+.  .....+..+..++...+.++..+.
T Consensus       161 ~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~  240 (303)
T PF08449_consen  161 LSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQF  240 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            344455888888888874 56899999999999998888777665  2111110  001123456667777777777777


Q ss_pred             HHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874           91 VGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK  150 (167)
Q Consensus        91 ~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~  150 (167)
                      +.+.-.+..+|...+++..+--+++.+++.++++++++ ..+|+|+++.+.|..+....+
T Consensus       241 ~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~-~~~~~G~~lv~~g~~~~~~~~  299 (303)
T PF08449_consen  241 FIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLS-PLQWIGIVLVFAGIFLYSYAK  299 (303)
T ss_pred             HHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCC-hHHHHHHHHhHHHHHHHHHhh
Confidence            77788999999999999999999999999999999995 999999999999999877644

; GO: 0055085 transmembrane transport

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.96  E-value=0.00013  Score=53.14  Aligned_cols=70  Identities=11%  Similarity=0.033  Sum_probs=59.9

Q ss_pred             HHHHHH-HHHHHHHHHHhhccchHHHHHH-hhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874           80 LLSSIG-VLSQTVGYIGIAYSSPTLSAAI-TNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK  150 (167)
Q Consensus        80 ~lgl~g-~~~~~~~~~gl~~tsa~~asii-~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~  150 (167)
                      ...+.+ ...++++..++++.+.+.|=.+ ..+.-+.+.+++.++++|+++ ..|++|+.+.++|++.+...+
T Consensus        34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s-~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLS-LMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhhcCC
Confidence            345666 8888999999999999998554 568888999999999999995 999999999999999886533

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.95  E-value=0.00029  Score=57.38  Aligned_cols=108  Identities=13%  Similarity=0.008  Sum_probs=84.9

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 042874           27 LFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAA  106 (167)
Q Consensus        27 ~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asi  106 (167)
                      +.|..... +.|...+.+|..+++++++++..   .++   .+.++++|..+...|..-...|.+||.+++..+=+.+..
T Consensus        30 ~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~R---Pwr---~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVA  102 (292)
T COG5006          30 FAKSLFPL-VGAAGVTALRLAIAALILLALFR---PWR---RRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVA  102 (292)
T ss_pred             HHHHHccc-cChhhHHHHHHHHHHHHHHHHhh---HHH---hccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence            56666664 89999999999999999988743   222   346789999999999877888899999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874          107 ITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus       107 i~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      +-++-|+.+.+++    .+|   .+..+=+.+++.|..++.-
T Consensus       103 iEF~GPL~vA~~~----sRr---~~d~vwvaLAvlGi~lL~p  137 (292)
T COG5006         103 IEFTGPLAVALLS----SRR---LRDFVWVALAVLGIWLLLP  137 (292)
T ss_pred             hhhccHHHHHHHh----ccc---hhhHHHHHHHHHHHHhhee
Confidence            9999999766543    233   2345566678888877754

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=97.94  E-value=1.1e-05  Score=68.59  Aligned_cols=74  Identities=16%  Similarity=0.325  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCC-CCCCCCCCc
Q 042874           86 VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKA-ASTNCPPSE  160 (167)
Q Consensus        86 ~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g-~~~~~~~~~  160 (167)
                      ...++.++.++.+|+.+..+++.++.-+||..++.++..||++ ..|++++.++++|+++++.++. +..+.++++
T Consensus       170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft-~sKllav~~si~GViiVt~~~s~~~~~~~a~~  244 (416)
T KOG2765|consen  170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFT-LSKLLAVFVSIAGVIIVTMGDSKQNSDLPASR  244 (416)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhh-HHHHHHHHHhhccEEEEEeccccccccCCccc
Confidence            7899999999999999999999999999999999999999995 9999999999999999887543 223444444

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.63  E-value=0.001  Score=47.66  Aligned_cols=68  Identities=18%  Similarity=0.047  Sum_probs=58.4

Q ss_pred             HHHHH-HHHHHHHHHHhhccchHHHHHH-hhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhc
Q 042874           81 LSSIG-VLSQTVGYIGIAYSSPTLSAAI-TNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMD  149 (167)
Q Consensus        81 lgl~g-~~~~~~~~~gl~~tsa~~asii-~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~  149 (167)
                      ..+.+ ...++++..++++.+-+.|=.+ ..+.-+.+.++++++++|+++ ..+++|+.+.++|++.+...
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~-~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD-LPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHhcC
Confidence            45666 7888889999999999888544 667888889999999999995 99999999999999998653

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=97.63  E-value=0.0065  Score=51.49  Aligned_cols=132  Identities=10%  Similarity=0.072  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHccCCC---CcCCCC------CHHHHHHHHHHH
Q 042874           15 IKQIKAIRNLEQLFKAASSKG---LSYYVFVGYSYPLATLALLPLIFIFPSTT---TVVPPF------KFSLLLRIFLLS   82 (167)
Q Consensus        15 ~~~~~~wg~~~i~~K~al~~~---~~p~~l~~~R~~~A~liL~~~~~~~~~~~---~~~~~~------~~~~~~~l~~lg   82 (167)
                      +..+..+++..+..|+.-..+   +.|.+..+.-=.+-.++.....+.. +|+   +....+      .+++...+.+=+
T Consensus        21 ~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa   99 (345)
T KOG2234|consen   21 IVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFE-ERKYAKKSLKSLSKEILAAPRETLKVSVPA   99 (345)
T ss_pred             HHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHH-hhHHhhhhhhhcCHHHHhChHHHHHHHHHH
Confidence            446667899999999987655   6777777777776666555554442 211   110111      234455555556


Q ss_pred             HHHHHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           83 SIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        83 l~g~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      ++-++.+.++|.++.+.+|++-.+..++--+-|+++..+++++|++ +.||..+++-++|+.++..
T Consensus       100 ~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs-~~Qw~Al~lL~~Gv~~vQ~  164 (345)
T KOG2234|consen  100 LIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLS-RLQWMALVLLFAGVALVQL  164 (345)
T ss_pred             HHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHhc
Confidence            6667777799999999999999999999999999999999999995 9999999999999999873

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.53  E-value=0.011  Score=49.10  Aligned_cols=126  Identities=11%  Similarity=-0.001  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042874           19 KAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAY   98 (167)
Q Consensus        19 ~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~   98 (167)
                      ..|+.|..+=|..   ++|+.+=...-...-...-+...++.....+....-+.+++..+...|...+++-.+|..|-+.
T Consensus       158 ~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~  234 (293)
T COG2962         158 LSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKR  234 (293)
T ss_pred             HHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence            3667777666663   3666654444444433333333333211111001124667888889999989999999999999


Q ss_pred             cchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           99 SSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        99 tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      .+=+.-+++++..|.+.++++.++++|+++ ..|...-+..-.|..+.+.
T Consensus       235 lpls~~G~lqYi~Ptl~fllav~i~~E~~~-~~~~~~F~~IW~aL~l~~~  283 (293)
T COG2962         235 LPLSTLGFLQYIEPTLMFLLAVLIFGEPFD-SDQLVTFAFIWLALALFSI  283 (293)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999996 8999998888888877664

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.48  E-value=4.2e-05  Score=62.76  Aligned_cols=135  Identities=15%  Similarity=0.066  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 042874           22 RNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSP  101 (167)
Q Consensus        22 g~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa  101 (167)
                      ++.+++.|+.=. ..+.+....|=..++.+.-+..+... . +.. .+..++||+.+..+|++|.+.|.+.-.|+|.--|
T Consensus       204 asvyIilR~iGk-~~h~~msvsyf~~i~lV~s~I~~~~i-g-~~~-lP~cgkdr~l~~~lGvfgfigQIllTm~lQiErA  279 (346)
T KOG4510|consen  204 ASVYIILRYIGK-NAHAIMSVSYFSLITLVVSLIGCASI-G-AVQ-LPHCGKDRWLFVNLGVFGFIGQILLTMGLQIERA  279 (346)
T ss_pred             hhHHHHHHHhhc-cccEEEEehHHHHHHHHHHHHHHhhc-c-cee-cCccccceEEEEEehhhhhHHHHHHHHHhhhhcc
Confidence            556677776422 34444444444444433322222221 2 111 2346788888999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc
Q 042874          102 TLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKAASTNCPPSEE  161 (167)
Q Consensus       102 ~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~  161 (167)
                      +-.+++.++.-++.++...++++|-++ ++.|.|.++.+...+..+..+..-.|..+++|
T Consensus       280 Gpvaim~~~dvvfAf~wqv~ff~~~Pt-~ws~~Ga~~vvsS~v~~a~~kwa~~~e~s~k~  338 (346)
T KOG4510|consen  280 GPVAIMTYTDVVFAFFWQVLFFGHWPT-IWSWVGAVMVVSSTVWVALKKWAGTNESSLKK  338 (346)
T ss_pred             CCeehhhHHHHHHHHHHHHHHhcCCCh-HHHhhceeeeehhHHHHHHHHHhccchhhHHH
Confidence            999999999999999999999999995 99999999988888887765544334333443

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.44  E-value=0.0064  Score=43.49  Aligned_cols=64  Identities=8%  Similarity=-0.063  Sum_probs=55.9

Q ss_pred             HHH-HHHHHHHHHHhhccchHHH-HHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHH
Q 042874           83 SIG-VLSQTVGYIGIAYSSPTLS-AAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSK  147 (167)
Q Consensus        83 l~g-~~~~~~~~~gl~~tsa~~a-sii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~  147 (167)
                      +.+ ...+++...++++.+.+.| ++-....-+.+.+.+.++++|+++ ..|++|+.+.+.|++.+.
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~-~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLN-RKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHHHHhc
Confidence            445 7888899999999999988 555668888899999999999995 999999999999998864

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.44  E-value=0.0019  Score=46.00  Aligned_cols=68  Identities=16%  Similarity=0.114  Sum_probs=58.9

Q ss_pred             HHHHHH-HHHHHHHHHHhhccchHHH-HHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           80 LLSSIG-VLSQTVGYIGIAYSSPTLS-AAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        80 ~lgl~g-~~~~~~~~~gl~~tsa~~a-sii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      ++.+.+ ...+.++-.++++.+-+.| ++-...--+.+.+.++++++|+++ ..|++|+.+.++|++.+..
T Consensus        34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~-~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLS-LIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCC-HHHHHHHHHHHHHHHHhhh
Confidence            344556 7888899999999999988 566778889999999999999995 9999999999999988765

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.40  E-value=0.00076  Score=56.70  Aligned_cols=140  Identities=14%  Similarity=0.121  Sum_probs=102.4

Q ss_pred             cchhhHHH--HHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHH-HHHHHccCCCCc---CC-CCCHHHHHHH
Q 042874            9 DEKDDIIK--QIKAIRNLEQLFKAAS---SKGLSYYVFVGYSYPLATLALL-PLIFIFPSTTTV---VP-PFKFSLLLRI   78 (167)
Q Consensus         9 ~~k~~~~~--~~~~wg~~~i~~K~al---~~~~~p~~l~~~R~~~A~liL~-~~~~~~~~~~~~---~~-~~~~~~~~~l   78 (167)
                      +..|.+.+  .+...+...++.|..+   .+.+|++.+..+.--++...++ |+.... +....   .. ..+.. ...+
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~-~~~~~~~~~~~~~~~~-~~~~  238 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYV-EGNKFVGFLTAPWFVT-FLIL  238 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhh-cccceeeeeccccchh-hHHH
Confidence            44555444  3345577889999988   3459999999999999999999 887663 32211   01 12222 3334


Q ss_pred             HHHHHHHHHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCC
Q 042874           79 FLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKA  151 (167)
Q Consensus        79 ~~lgl~g~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g  151 (167)
                      .+.+++....|..-|+.+..|||-+=++....==+++...++++++|+++ ..+..|..+++.|+.+..-.+.
T Consensus       239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt-~~n~~G~~iai~Gv~~Y~~~k~  310 (316)
T KOG1441|consen  239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVT-FLNALGYAIAILGVFLYSRAKL  310 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCc-hhhHHHHHHHHHHHHHHHHHhh
Confidence            44555447788889999999999998888876666777788888888994 9999999999999999876443

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.40  E-value=0.0091  Score=44.32  Aligned_cols=105  Identities=12%  Similarity=0.094  Sum_probs=76.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhhhHHH-HH
Q 042874           37 SYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPA-FT  115 (167)
Q Consensus        37 ~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii~~l~Pv-~~  115 (167)
                      ||+.-++.-+..+.+++..+.... +++.. ...+..+|+ ...=|++|..+-.+..+..+..+++.+..+.-+.=+ ..
T Consensus        29 s~~~as~i~~~~G~i~~~i~~~~~-~~~~~-~~~~~~p~w-~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~s  105 (138)
T PF04657_consen   29 SPLVASFISFGVGFILLLIILLIT-GRPSL-ASLSSVPWW-AYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIAS  105 (138)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHh-ccccc-chhccCChH-HhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            699999999999999888887765 33222 223323343 344788888888888999999999999877665444 44


Q ss_pred             HHHHHH----HhhcccCchhHHHHHHHHHHHHHH
Q 042874          116 FTLAIL----FSCLKMMSWIEIIIIIIINNDTLT  145 (167)
Q Consensus       116 ~ila~~----~~~Er~~~~~~~~Gi~l~~~Gv~l  145 (167)
                      .++.++    .-++++ +..|++|+++.++|+.+
T Consensus       106 l~iD~fG~fg~~~~~~-~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen  106 LLIDHFGLFGAPKRPF-SLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHccccCCCCCCC-CHHHHHHHHHHHHHHhC
Confidence            555653    255667 48999999999999863

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.33  E-value=0.0033  Score=44.67  Aligned_cols=65  Identities=9%  Similarity=-0.027  Sum_probs=56.9

Q ss_pred             HHH-HHHHHHHHHHhhccchHHH-HHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           83 SIG-VLSQTVGYIGIAYSSPTLS-AAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        83 l~g-~~~~~~~~~gl~~tsa~~a-sii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      +.+ ...+++...++++.+.+.| ++-..+--+.+.+++.++++|+++ ..|++|+.+.+.|++.+..
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~-~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESAS-PARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHhhhc
Confidence            556 8888899999999999888 555668888999999999999995 9999999999999988754

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.30  E-value=0.00038  Score=58.06  Aligned_cols=74  Identities=15%  Similarity=0.235  Sum_probs=63.4

Q ss_pred             HHHHHHHH-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCCC
Q 042874           78 IFLLSSIG-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKAA  152 (167)
Q Consensus        78 l~~lgl~g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g~  152 (167)
                      ..+.|+.- ...+.+.+.++.+.+++.-+-+..+.=++.++++..+++||++ +..+.|+.+++.|+.++.....+
T Consensus        52 ~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~-~~~~~G~~l~i~G~~liv~~~~~  126 (300)
T PF05653_consen   52 LWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLT-RRDIVGCALIILGSVLIVIFAPK  126 (300)
T ss_pred             HHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccch-HhHHhhHHHHHhhheeeEEeCCC
Confidence            44566666 6677788899999999999999999999999999999999995 99999999999999887764433

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.11  E-value=0.013  Score=49.44  Aligned_cols=123  Identities=16%  Similarity=0.089  Sum_probs=95.2

Q ss_pred             HHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 042874           24 LEQLFKAASS--KGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSP  101 (167)
Q Consensus        24 ~~i~~K~al~--~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa  101 (167)
                      ..+.-|..++  +.--|..++..+.+.+.+.+....... ..+.. +..++..|..++.+|++-++...+-+.++.|.+.
T Consensus        32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~-~~~~~-~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~V  109 (316)
T KOG1441|consen   32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLK-LVPPS-KISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPV  109 (316)
T ss_pred             eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhc-CCCCC-ccccccchHHHHHHHHHHHHHHHhcchhhhccch
Confidence            3356788887  556789999998888877666554442 22221 2224566888899999888888999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhhcccC---------------------chhHHHHHHHHHHHHHHHHh
Q 042874          102 TLSAAITNTIPAFTFTLAILFSCLKMM---------------------SWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus       102 ~~asii~~l~Pv~~~ila~~~~~Er~~---------------------~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      +..-.+=++.|.+++++++++.+|+.+                     ..-.+.|.+.++++...-+.
T Consensus       110 sF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al  177 (316)
T KOG1441|consen  110 SFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFAL  177 (316)
T ss_pred             hHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999987                     22567888888888765444

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=97.07  E-value=0.0054  Score=50.92  Aligned_cols=125  Identities=12%  Similarity=0.079  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHHHHHHHHHHccCCCCcC--CC----CCHH---HHHH-HHHHHHH
Q 042874           22 RNLEQLFKAASS---KGLS----YYVFVGYSYPLATLALLPLIFIFPSTTTVV--PP----FKFS---LLLR-IFLLSSI   84 (167)
Q Consensus        22 g~~~i~~K~al~---~~~~----p~~l~~~R~~~A~liL~~~~~~~~~~~~~~--~~----~~~~---~~~~-l~~lgl~   84 (167)
                      +.|.+.+|++=+   +|.|    |+.-+..-|+.=.+++..+.+.+ .|...+  ..    +..+   .+.. +++.=.+
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir-~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal   94 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIR-LRSNGQGVSSDLDSILSQDSSPFNPVLFLPPAL   94 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCcccccccccccccCCCCcceecChHH
Confidence            447889999743   3433    66666666666667777766654 322210  00    0001   1111 1222233


Q ss_pred             H-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           85 G-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        85 g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      . .....+.|.|+.+|+|+.--.+-...-+|+.+++.-+++.++. .+||+|+.....|.+.+..
T Consensus        95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~-~~qWl~i~fv~lGlviVg~  158 (372)
T KOG3912|consen   95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTIT-GRQWLGILFVSLGLVIVGS  158 (372)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccc-hhhHHHHHHHHhhhheeee
Confidence            4 6667788999999999999999999999999999999999995 9999999999999988754

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.02  E-value=0.0036  Score=43.25  Aligned_cols=56  Identities=13%  Similarity=-0.007  Sum_probs=35.0

Q ss_pred             HHHH-HHHHHHHHHHhhccchHHH-HHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHH
Q 042874           82 SSIG-VLSQTVGYIGIAYSSPTLS-AAITNTIPAFTFTLAILFSCLKMMSWIEIIIIII  138 (167)
Q Consensus        82 gl~g-~~~~~~~~~gl~~tsa~~a-sii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l  138 (167)
                      .+.+ ...++++..++++.+.+.| ++...+..+.+.+.+.++++|+++ ..|++|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s-~~~~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLS-LSKWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCC-HHHHhheee
Confidence            4446 7888899999999999999 666779999999999999999995 999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=96.85  E-value=0.00055  Score=54.15  Aligned_cols=61  Identities=20%  Similarity=0.184  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHH
Q 042874           86 VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSK  147 (167)
Q Consensus        86 ~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~  147 (167)
                      ++.++.|..+++..+|+.++.+..+.-.|+.+++++.+++|+. ..|++..++++.|++.++
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~-~~kIlaailAI~GiVmia  124 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFM-GFKILAAILAIGGIVMIA  124 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchh-hhhHHHHHHHhCcEEEEE
Confidence            6788999999999999999999999999999999999999996 788888888888887665

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.35  E-value=0.0078  Score=43.35  Aligned_cols=106  Identities=12%  Similarity=-0.036  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHH-HHHHHHHHHH
Q 042874           17 QIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIG-VLSQTVGYIG   95 (167)
Q Consensus        17 ~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~~~~~g   95 (167)
                      .-.+||.+.++.|.+.+ +.++..-.. |..-....     .             .++|.+.  ..+.- -.....|++.
T Consensus         4 Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~-----L-------------l~n~~y~--ipf~lNq~GSv~f~~~   61 (113)
T PF10639_consen    4 VGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKF-----L-------------LLNPKYI--IPFLLNQSGSVLFFLL   61 (113)
T ss_pred             ehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHH-----H-------------HHhHHHH--HHHHHHHHHHHHHHHH
Confidence            44689999999999875 344443331 32111111     0             1112222  23333 4556688899


Q ss_pred             hhccchHHHHHHh-hhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHH
Q 042874           96 IAYSSPTLSAAIT-NTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLT  145 (167)
Q Consensus        96 l~~tsa~~asii~-~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~l  145 (167)
                      +..++-+.+.-+. ++.=++|++.++++.+|.. +++.++|+.+.+.|+.+
T Consensus        62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~-~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVI-SRRTWLGMALILAGVAL  111 (113)
T ss_pred             HhcCCceeeehHHhHHHHHHHHHHHHHhcCccc-chhHHHHHHHHHcCeee
Confidence            9999999999886 6788888899987777776 58889999999999865

Many members are annotated as potential transmembrane proteins.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.35  E-value=0.0089  Score=48.60  Aligned_cols=76  Identities=14%  Similarity=0.123  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           72 FSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        72 ~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      +..|..+.++|+.+++.|.+.|.-+.+-+|-..++++.+--.|+.+.+.++++.++ +.+||+|.++.+.+...=..
T Consensus       238 P~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npl-s~rQwlgtvlVF~aL~~D~~  313 (337)
T KOG1580|consen  238 PYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPL-SGRQWLGTVLVFSALTADVV  313 (337)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcC-cHHHHHHHHHHHHHhhhHhh
Confidence            45677888999988999999999999999999999999999999999999999999 59999999999999877444

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.03  E-value=0.15  Score=42.01  Aligned_cols=120  Identities=14%  Similarity=0.002  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042874           15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYI   94 (167)
Q Consensus        15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~   94 (167)
                      +.....|..|.++.|..   ++||.+..+=+ .++-++-..+.... .++   +..+++.|+ =++-|++-...+.+++.
T Consensus       144 l~stigy~~Y~~~~~~~---~~~~~~~~lPq-aiGm~i~a~i~~~~-~~~---~~~~k~~~~-nil~G~~w~ignl~~~i  214 (269)
T PF06800_consen  144 LISTIGYWIYSVIPKAF---HVSGWSAFLPQ-AIGMLIGAFIFNLF-SKK---PFFEKKSWK-NILTGLIWGIGNLFYLI  214 (269)
T ss_pred             HHHHHHHHHHHHHHHhc---CCChhHhHHHH-HHHHHHHHHHHhhc-ccc---cccccchHH-hhHHHHHHHHHHHHHHH
Confidence            33455667788888874   37777766644 33322222221111 111   112233333 35566655777888999


Q ss_pred             HhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHH----HHHHHHHHHHH
Q 042874           95 GIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEI----IIIIIINNDTL  144 (167)
Q Consensus        95 gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~----~Gi~l~~~Gv~  144 (167)
                      +.+..+.+.+=.+..+.+++..+-+.+++||+-+ ++++    +|+++.+.|++
T Consensus       215 s~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt-~ke~~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  215 SAQKNGVATAFTLSQLGVVISTLGGIFILKEKKT-KKEMIYTLIGLILIVIGAI  267 (269)
T ss_pred             hHHhccchhhhhHHhHHHHHHHhhhheEEEecCc-hhhHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999984 6654    45555555543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00803 nst UDP-galactose transporter

Probab=95.78  E-value=0.093  Score=41.25  Aligned_cols=60  Identities=12%  Similarity=-0.071  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHH
Q 042874           85 GVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLT  145 (167)
Q Consensus        85 g~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~l  145 (167)
                      .+..+.+..+-++|.++..-+....+.++++.+++.++++|+++ ..+++|+.+.+.|+.+
T Consensus       162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls-~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKIS-STFYLGAILVFLATFL  221 (222)
T ss_pred             HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHeeeEe
Confidence            35566678888999999999999999999999999999999995 9999999999988653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.67  E-value=0.0046  Score=51.88  Aligned_cols=80  Identities=13%  Similarity=0.172  Sum_probs=63.9

Q ss_pred             HHHHHHHH-HHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcCCCCCCC
Q 042874           78 IFLLSSIG-VLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDKAASTNC  156 (167)
Q Consensus        78 l~~lgl~g-~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~  156 (167)
                      ..+.|++- .+....-|-+..+.+++.-+-+-++.-+..++++..+++||++ ....+|+.++++|..+++. .++.++.
T Consensus        66 ~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~-~~g~lGc~l~v~Gst~iV~-haP~e~~  143 (335)
T KOG2922|consen   66 LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLN-LLGILGCVLCVVGSTTIVI-HAPKEQE  143 (335)
T ss_pred             HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHH-HhhhhheeEEecccEEEEE-ecCcccc
Confidence            34566666 6666666778888899999999999999999999999999996 8999999999999998876 4443443


Q ss_pred             CCC
Q 042874          157 PPS  159 (167)
Q Consensus       157 ~~~  159 (167)
                      -.|
T Consensus       144 i~t  146 (335)
T KOG2922|consen  144 IES  146 (335)
T ss_pred             ccc
Confidence            333

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.62  E-value=0.18  Score=42.31  Aligned_cols=138  Identities=14%  Similarity=0.126  Sum_probs=98.1

Q ss_pred             hhhHHHHHHHH--HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHccCCC----CcCCCCCHHHHHHHHHHHH
Q 042874           11 KDDIIKQIKAI--RNLEQLFKAASS-KGLSYYVFVGYSYPLATLALLPLIFIFPSTT----TVVPPFKFSLLLRIFLLSS   83 (167)
Q Consensus        11 k~~~~~~~~~w--g~~~i~~K~al~-~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~----~~~~~~~~~~~~~l~~lgl   83 (167)
                      .|+....+-+|  +.+.+..|...+ .+.+-+.+.+|-.+++.+.+..+.+..++..    ..........+..+.+-++
T Consensus       157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv  236 (314)
T KOG1444|consen  157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV  236 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence            34543333344  556677787765 3477788899999999888777765542211    0001123445677788888


Q ss_pred             HHHHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhc
Q 042874           84 IGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMD  149 (167)
Q Consensus        84 ~g~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~  149 (167)
                      +|.+-.++-++..+.+||.+-++.-...=..+.+...++.+++.+ +..++|+.+++.|-+..+..
T Consensus       237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~-~~n~~gll~~~~ggv~Y~~~  301 (314)
T KOG1444|consen  237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFT-FLNVIGLLVGFFGGVLYSYA  301 (314)
T ss_pred             HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceec-hhhhHHHHHHhhhhhHHhhh
Confidence            887777788899999999998888866666667777788888885 99999999999999887653

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.38  E-value=0.56  Score=39.45  Aligned_cols=122  Identities=12%  Similarity=-0.009  Sum_probs=88.1

Q ss_pred             HHHHHHHHHhCCCCHHHHHH--HHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 042874           24 LEQLFKAASSKGLSYYVFVG--YSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSP  101 (167)
Q Consensus        24 ~~i~~K~al~~~~~p~~l~~--~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa  101 (167)
                      ..++=|.++...=-|..+..  +|.+...+++...-..+ --+.  ++++++..+..+-..++-.+..+.=..+++|.+-
T Consensus        27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~-lv~~--~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnV  103 (314)
T KOG1444|consen   27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLG-LVNF--RPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNV  103 (314)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhc-eeec--CCcChHHHHHHccHHHHHHHHHHHccccccccCc
Confidence            34566888765333444444  88888877766553321 1111  4566777777777777666666666788999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhc
Q 042874          102 TLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMD  149 (167)
Q Consensus       102 ~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~  149 (167)
                      ..-+++=+.+|+++++....+++.|++ ..-+..+....+|....+..
T Consensus       104 pm~tv~kn~tii~~ai~E~lf~~~~~~-~~v~~Sv~~m~~~s~~~~~~  150 (314)
T KOG1444|consen  104 PMFTVFKNLTIILTAIGEVLFFGKRPS-NKVWASVFAMIIGSVAAAFT  150 (314)
T ss_pred             hHHHHHhhchHHHHHHhHHhhcCcCch-hhHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999884 77788888888887776553

>PRK13499 rhamnose-proton symporter; Provisional

Probab=95.25  E-value=1.4  Score=37.64  Aligned_cols=123  Identities=13%  Similarity=-0.002  Sum_probs=67.3

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHH---HHHHHHHH-HHHHccCC-CCcC----CCCCHHHHHHHHHHHHH-H---HHHHHHH
Q 042874           26 QLFKAASSKGLSYYVFVGYSYP---LATLALLP-LIFIFPST-TTVV----PPFKFSLLLRIFLLSSI-G---VLSQTVG   92 (167)
Q Consensus        26 i~~K~al~~~~~p~~l~~~R~~---~A~liL~~-~~~~~~~~-~~~~----~~~~~~~~~~l~~lgl~-g---~~~~~~~   92 (167)
                      +.-+.+...+.+|.....-.+.   +++.+.-. ++.+...| ++..    .+.+++.+..=.+++.+ |   ...+.+|
T Consensus       198 ~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y  277 (345)
T PRK13499        198 PMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFY  277 (345)
T ss_pred             chhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555567888877777766   55544432 22221011 1110    11122222333222222 2   5566788


Q ss_pred             HHHhhccchHHHHH---Hh-hhHHHHHHHHHHHHhhcccC-----chhHHHHHHHHHHHHHHHHhc
Q 042874           93 YIGIAYSSPTLSAA---IT-NTIPAFTFTLAILFSCLKMM-----SWIEIIIIIIINNDTLTSKMD  149 (167)
Q Consensus        93 ~~gl~~tsa~~asi---i~-~l~Pv~~~ila~~~~~Er~~-----~~~~~~Gi~l~~~Gv~li~~~  149 (167)
                      ..|-+..+.+.+.+   +. .++-++..+-+. ++||+-+     .+.-++|+++.+.|+.++...
T Consensus       278 ~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        278 AMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             HHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            88888876555544   55 444455555555 6999863     133488999999999888653

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=95.07  E-value=0.001  Score=54.44  Aligned_cols=104  Identities=13%  Similarity=0.054  Sum_probs=81.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhhhHHHHHH
Q 042874           37 SYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTF  116 (167)
Q Consensus        37 ~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~  116 (167)
                      -|..-+|.-+..=+++-.|+..+|  ++.     -...|...+++|+.-.=.+++...+.|||+-+...++..-.-..+.
T Consensus        47 ~Pt~QtFl~Y~LLalVY~~~~~fR--~~~-----~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~  119 (336)
T KOG2766|consen   47 APTSQTFLNYVLLALVYGPIMLFR--RKY-----IKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVL  119 (336)
T ss_pred             CccHHHHHHHHHHHHHHhhHHHhh--hHH-----HHHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHH
Confidence            355567777777778888887774  222     1344677888888776666777889999999999999876655678


Q ss_pred             HHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874          117 TLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus       117 ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      +++++++|.|-+ +.|+.|+++|+.|++.++.
T Consensus       120 ~lsw~fLktrYr-lmki~gV~iCi~GvvmvV~  150 (336)
T KOG2766|consen  120 VLSWFFLKTRYR-LMKISGVVICIVGVVMVVF  150 (336)
T ss_pred             HHHHHHHHHHHh-hheeeeEEeEecceEEEEE
Confidence            899999999994 9999999999999988765

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=94.97  E-value=0.34  Score=41.76  Aligned_cols=131  Identities=18%  Similarity=0.144  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHcc--CCCCcCCCCCHHHHHHHHHHHHHH-HHHHH
Q 042874           17 QIKAIRNLEQLFKAASSK---GLSYYVFVGYSYPLATLALLPLIFIFP--STTTVVPPFKFSLLLRIFLLSSIG-VLSQT   90 (167)
Q Consensus        17 ~~~~wg~~~i~~K~al~~---~~~p~~l~~~R~~~A~liL~~~~~~~~--~~~~~~~~~~~~~~~~l~~lgl~g-~~~~~   90 (167)
                      ....||.+.++.|.-.++   .+|--.+-.+=-++..++++|..+...  ...+. .-.+..+...++..+++| ++.-+
T Consensus       255 sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F-~lP~~~q~~~vv~~~ligtvvSDy  333 (416)
T KOG2765|consen  255 SALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERF-ELPSSTQFSLVVFNNLIGTVVSDY  333 (416)
T ss_pred             HHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcc-cCCCCceeEeeeHhhHHHHHHHHH
Confidence            445789999988887653   255555555555666777776655430  11111 112334456678899999 99999


Q ss_pred             HHHHHhhccchHHHHHHhh-hHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874           91 VGYIGIAYSSPTLSAAITN-TIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK  150 (167)
Q Consensus        91 ~~~~gl~~tsa~~asii~~-l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~  150 (167)
                      +|.+|.-.|++-.+++=++ ++|+ .++...++.+.++ +...++|.+..+.|-+.++..+
T Consensus       334 lW~~a~~lTs~Lv~TlgmSltIPL-A~~aD~l~k~~~~-S~~~iiGsi~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  334 LWAKAVLLTSPLVVTLGMSLTIPL-AMFADVLIKGKHP-SALYIIGSIPIFVGFVIVNISS  392 (416)
T ss_pred             HHHHHHHhccchhheeeeeEeeeH-HHHHHHHHcCCCC-CHHHHHHHHHHHHHHhheeccc
Confidence            9999999999999998776 5575 3444455556667 5999999999999988877543

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.96  E-value=0.19  Score=42.19  Aligned_cols=112  Identities=11%  Similarity=0.042  Sum_probs=89.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCc----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhh
Q 042874           34 KGLSYYVFVGYSYPLATLALLPLIFIFPSTTTV----VPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITN  109 (167)
Q Consensus        34 ~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~----~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii~~  109 (167)
                      .++++..+.++-.++.++.=......  ....+    ..+..++-++.+++++.+|++.|.+.|+-++.-++-.-+.|+.
T Consensus       198 ~k~s~~~mM~~vNLf~~i~~~~~li~--qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~t  275 (327)
T KOG1581|consen  198 YKVSSLHMMFGVNLFSAILNGTYLIL--QGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMT  275 (327)
T ss_pred             CCccHhHHHHHHHHHHHHHHHHhhhc--CCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHH
Confidence            45899998888888876654443222  11111    0123567788999999999889999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874          110 TIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus       110 l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      +==++..+++.+..+.++ +..|++|+.+.+.|..+=+.
T Consensus       276 tRk~~si~lS~i~f~h~~-s~~q~~g~~iVFg~i~l~~~  313 (327)
T KOG1581|consen  276 TRKMVSIMLSCIVFGHPL-SSEQWLGVLIVFGGIFLEIL  313 (327)
T ss_pred             HHHHHHHHHHHHHhCCcc-chhhccCeeeehHHHHHHHH
Confidence            999999999999999999 59999999999999987544

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.64  E-value=0.67  Score=35.00  Aligned_cols=108  Identities=13%  Similarity=0.042  Sum_probs=68.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH-hhhHHHHH
Q 042874           37 SYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAI-TNTIPAFT  115 (167)
Q Consensus        37 ~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii-~~l~Pv~~  115 (167)
                      +|+.-.+..+..++.++..+.+.. ++... ....++.-++...=|++|+.+-..-....+..++++...+ ..-+=+..
T Consensus        33 spl~As~isf~vGt~~L~~l~l~~-~~~~~-~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~g  110 (150)
T COG3238          33 SPLLASLISFLVGTVLLLILLLIK-QGHPG-LAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMG  110 (150)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHh-cCCCc-hhhccCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHH
Confidence            799999999999999888877764 33222 2211222233455567776555555666777776666544 34445555


Q ss_pred             HHHHHHHhh----cccCchhHHHHHHHHHHHHHHHH
Q 042874          116 FTLAILFSC----LKMMSWIEIIIIIIINNDTLTSK  147 (167)
Q Consensus       116 ~ila~~~~~----Er~~~~~~~~Gi~l~~~Gv~li~  147 (167)
                      +++..+=..    .++ +..+++|+++.++|++++.
T Consensus       111 lliD~fG~~g~~~~~~-~~~r~lgi~L~l~gil~~~  145 (150)
T COG3238         111 LLIDHFGWFGVPKRPL-NLPRILGILLVLAGILLAR  145 (150)
T ss_pred             HHHHhhcccCCCcCCC-CHHHHHHHHHHHHHHHHhc
Confidence            555543322    455 4889999999999965553

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=94.50  E-value=0.028  Score=47.16  Aligned_cols=131  Identities=8%  Similarity=0.063  Sum_probs=82.3

Q ss_pred             HHHHHHH-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHccCC--CCcCCCCCHHHH-HHHHHHHHHHH
Q 042874           15 IKQIKAI-----RNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIFIFPST--TTVVPPFKFSLL-LRIFLLSSIGV   86 (167)
Q Consensus        15 ~~~~~~w-----g~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~~~~~~--~~~~~~~~~~~~-~~l~~lgl~g~   86 (167)
                      ++.+..|     +..+...+.-.+-+ =|+-++.+..++=.++-...-...+++  |.+ .+.++++. +++...|+.++
T Consensus        18 L~lVl~yY~~Si~Ltf~~~~~~~~f~-fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r-~~~sw~~~Lr~~aPtalata   95 (349)
T KOG1443|consen   18 LALVLLYYFLSIGLTFYFKWLTKNFH-FPLFVTSLHLAVKFLFAALSRRLYQCSVPRAR-VVLSWRDYLRRLAPTALATA   95 (349)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhcCcC-CchHHHHHHHHHHHHHHHHHHHHHhccCCccc-cCCcHHHHHHHhhhhhhhhh
Confidence            4444555     33444444444332 366667666554332221111111011  111 23555553 45567777778


Q ss_pred             HHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHh
Q 042874           87 LSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        87 ~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      ..-.+-+++++|++-+.=++.=+..|+|+.+++.++.-||++ +.-..-+.+..+|+++.+.
T Consensus        96 ~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~-w~L~l~v~lI~~Glflft~  156 (349)
T KOG1443|consen   96 LDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFR-WALVLIVLLIAVGLFLFTY  156 (349)
T ss_pred             cccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHH-HHHHHHHHHHhhheeEEEe
Confidence            888899999999999999999999999999999999999994 6655555556666665543

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=94.06  E-value=1.1  Score=36.44  Aligned_cols=126  Identities=12%  Similarity=0.087  Sum_probs=92.7

Q ss_pred             HHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 042874           24 LEQLFKAASS-KGLSYYVFVGYSYPLATLALLPLIFIFPSTTTV--VPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSS  100 (167)
Q Consensus        24 ~~i~~K~al~-~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~--~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~ts  100 (167)
                      +....|...+ ....-..-.+|..+++..+++.+.+..+++...  ....+...+.++++.|++.++-.++--|.++-|+
T Consensus       170 fVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtS  249 (309)
T COG5070         170 FVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTS  249 (309)
T ss_pred             HHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehh
Confidence            3444555432 235667889999999999999888876222211  0123455566777888877666677788899999


Q ss_pred             hHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874          101 PTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK  150 (167)
Q Consensus       101 a~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~  150 (167)
                      .+.-+..-++.-.-..+-+.++++|+.+ ..++..+.+++..-.+.+..+
T Consensus       250 STtySMvGALNKlp~alaGlvffdap~n-f~si~sillGflsg~iYavak  298 (309)
T COG5070         250 STTYSMVGALNKLPIALAGLVFFDAPVN-FLSIFSILLGFLSGAIYAVAK  298 (309)
T ss_pred             hhHHHHHHHhhhChHHHhhhhhcCCchh-HHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888889999999996 889999999887666655433

>PRK13499 rhamnose-proton symporter; Provisional

Probab=93.15  E-value=2.1  Score=36.61  Aligned_cols=130  Identities=12%  Similarity=0.075  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH--HccCCCCc--CCCCCHHHHHHHHHHHHHHHHHHH
Q 042874           15 IKQIKAIRNLEQLFKAASSKGLSYYVFVGYSYPLATLALLPLIF--IFPSTTTV--VPPFKFSLLLRIFLLSSIGVLSQT   90 (167)
Q Consensus        15 ~~~~~~wg~~~i~~K~al~~~~~p~~l~~~R~~~A~liL~~~~~--~~~~~~~~--~~~~~~~~~~~l~~lgl~g~~~~~   90 (167)
                      ..+..+||++++-.|.. ++ .|-..+ +.-..+=.-++.|+..  .. .+.-.  ....+.+.+..-++.|.+=...|.
T Consensus        13 ~i~~~~~GS~~~p~K~~-k~-w~wE~~-W~v~gi~~wl~~~~~~g~~~-~~~f~~~~~~~~~~~~~~~~l~G~~W~iG~i   88 (345)
T PRK13499         13 LIGGASSGSFYAPFKKV-KK-WSWETM-WSVGGIFSWLILPWLIAALL-LPDFWAYYSSFSGSTLLPVFLFGALWGIGGI   88 (345)
T ss_pred             HHHHHHhhccccccccc-CC-CchhHH-HHHHHHHHHHHHHHHHHHHH-hhhHHHHHHhcCHHHHHHHHHHHHHHHhhhh
Confidence            44667999999999993 32 342211 1100000112222111  10 11000  012345555555556655578899


Q ss_pred             HHHHHhhccchHHHHHH-hhhHHHHHHHHHHHHhhccc---C---chhHHHHHHHHHHHHHHHHh
Q 042874           91 VGYIGIAYSSPTLSAAI-TNTIPAFTFTLAILFSCLKM---M---SWIEIIIIIIINNDTLTSKM  148 (167)
Q Consensus        91 ~~~~gl~~tsa~~asii-~~l~Pv~~~ila~~~~~Er~---~---~~~~~~Gi~l~~~Gv~li~~  148 (167)
                      .++.++++.+-+.+--+ +.++=+...++..++++|=.   +   ...-.+|+++.++|+.+...
T Consensus        89 ~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~  153 (345)
T PRK13499         89 TYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR  153 (345)
T ss_pred             hHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888655 45777888888888877532   2   24468899999999998876

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=92.98  E-value=1.5  Score=36.20  Aligned_cols=77  Identities=10%  Similarity=0.059  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhh-hHHHHHHHHHHHHhhcccCchhH---HHHHHHHHHHHHHHH
Q 042874           72 FSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITN-TIPAFTFTLAILFSCLKMMSWIE---IIIIIIINNDTLTSK  147 (167)
Q Consensus        72 ~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii~~-l~Pv~~~ila~~~~~Er~~~~~~---~~Gi~l~~~Gv~li~  147 (167)
                      .+.+..-++.|++-...|..++.+.++.+.+++-=+.+ .+=+.+.++++++++|--+...+   .+++++.++|+.+-+
T Consensus        42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts  121 (269)
T PF06800_consen   42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS  121 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence            36677666777766889999999999999998876654 66666888999999997642233   346677888887765


Q ss_pred             h
Q 042874          148 M  148 (167)
Q Consensus       148 ~  148 (167)
                      .
T Consensus       122 ~  122 (269)
T PF06800_consen  122 Y  122 (269)
T ss_pred             c
Confidence            4

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=88.41  E-value=10  Score=32.17  Aligned_cols=108  Identities=19%  Similarity=0.128  Sum_probs=68.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHccCCCCcC---C---CC-CHHHHHHHHHHHHHH-H--HHHHHHHHHhhccchHHHHH
Q 042874           37 SYYVFVGYSYPLATLALLPLIFIFPSTTTVV---P---PF-KFSLLLRIFLLSSIG-V--LSQTVGYIGIAYSSPTLSAA  106 (167)
Q Consensus        37 ~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~---~---~~-~~~~~~~l~~lgl~g-~--~~~~~~~~gl~~tsa~~asi  106 (167)
                      +|++..+.=.-.-.+.++|..+.. |.....   +   .. +..-++.+..+++.| .  +--...|.=+..|+.-+-++
T Consensus       196 ~P~~ti~~l~p~M~~~Ll~~~l~f-EG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSI  274 (349)
T KOG1443|consen  196 NPIDTIFHLQPWMSIGLLPLSLLF-EGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSI  274 (349)
T ss_pred             CCeeeHHHhhhHHHHHHHHHHHHH-cccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeH
Confidence            566666655555566666766655 432210   0   00 111233344445545 2  23335566667777666666


Q ss_pred             HhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHH
Q 042874          107 ITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTS  146 (167)
Q Consensus       107 i~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li  146 (167)
                      .--.-=+.+.+++..+.+|++ +-..+.|..++..|+..-
T Consensus       275 aGI~Kel~tl~la~ii~~d~l-s~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  275 AGIVKEVCTLLLAIIILKDQL-SLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHHHhhcch-hhhHHHHHHHHHHHHHHh
Confidence            666667778899999999999 599999999999999887

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=86.88  E-value=4.5  Score=33.86  Aligned_cols=112  Identities=16%  Similarity=0.084  Sum_probs=80.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHccCC-CCcC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhhhH
Q 042874           35 GLSYYVFVGYSYPLATLALLPLIFIFPST-TTVV--PPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTI  111 (167)
Q Consensus        35 ~~~p~~l~~~R~~~A~liL~~~~~~~~~~-~~~~--~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii~~l~  111 (167)
                      +-+...+.+|...++.+.++.......+- +.+.  ...+.+.....++.++.|.+.+.+-..=++--+|..|+.++..-
T Consensus       217 ~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaR  296 (367)
T KOG1582|consen  217 PASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTAR  296 (367)
T ss_pred             CCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhH
Confidence            45667888899988888776665543110 0000  11235566677777777755555555667778999999999999


Q ss_pred             HHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHH
Q 042874          112 PAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSK  147 (167)
Q Consensus       112 Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~  147 (167)
                      -.+|.+++++++..+++ ....-|.++.+.|+++=.
T Consensus       297 KavTi~lSfllFsKPfT-~qy~~~gllv~lgI~Ln~  331 (367)
T KOG1582|consen  297 KAVTILLSFLLFSKPFT-EQYVWSGLLVVLGIYLNM  331 (367)
T ss_pred             hHHHHHHHHHHHcCchH-HHHhhhhHHHHHHHHhhc
Confidence            99999999999999995 777778888899998743

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=84.22  E-value=3.4  Score=33.90  Aligned_cols=77  Identities=13%  Similarity=0.102  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhccchHHHHHHhhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC-CCCCCCC
Q 042874           79 FLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK-AASTNCP  157 (167)
Q Consensus        79 ~~lgl~g~~~~~~~~~gl~~tsa~~asii~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~-g~~~~~~  157 (167)
                      ...++--.+....-+.++||.+=-+.-+=-++-|+=+++++.++.+.+- ++++..-++..+.||.+.. ++ +...+..
T Consensus        89 aAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY-~w~kY~cVL~IV~GValFm-YK~~Kv~g~e  166 (337)
T KOG1580|consen   89 AACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSY-HWRKYCCVLMIVVGVALFM-YKENKVGGAE  166 (337)
T ss_pred             HHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccc-cHHHHHHHHHHHHHHHHhh-ccccccCCCc
Confidence            3444332556667788899998777777778889999999999999999 4999999999999998875 45 4444444

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=81.84  E-value=2.5  Score=30.28  Aligned_cols=57  Identities=16%  Similarity=0.137  Sum_probs=42.8

Q ss_pred             HHHHHHHhhccchHHHHHHhh-hHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHH
Q 042874           89 QTVGYIGIAYSSPTLSAAITN-TIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTS  146 (167)
Q Consensus        89 ~~~~~~gl~~tsa~~asii~~-l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li  146 (167)
                      ..+||.-++.++-+.|.-+.| +.=.|+.+.+..+ +|+....+.++|+.+.+.|+.+.
T Consensus        66 Saly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   66 SALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGLALLGTSLIVFGIWLC  123 (125)
T ss_pred             HHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccceeehhhhHHhhhhhhe
Confidence            346777788888888876655 6677788888764 55554577899999999998764

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=81.71  E-value=20  Score=30.32  Aligned_cols=106  Identities=17%  Similarity=0.114  Sum_probs=72.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhh--hHHHH
Q 042874           37 SYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITN--TIPAF  114 (167)
Q Consensus        37 ~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii~~--l~Pv~  114 (167)
                      +|..+.+.+-+.+.++=.....+   ++..  ...++.|......++...+...+.|.+++|.|=-+-.+==+  +.|++
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~~---~k~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm  124 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLKW---WKKE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM  124 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhc---cccc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH
Confidence            56677777777776655333322   2222  23456688888888888888899999999998333333222  56665


Q ss_pred             HHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874          115 TFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK  150 (167)
Q Consensus       115 ~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~  150 (167)
                        +...++.+.|.+ ..+.+-..+.-.|+.+....+
T Consensus       125 --lmg~Lvy~~ky~-~~eYl~~~LIs~GvsiF~l~~  157 (327)
T KOG1581|consen  125 --LMGTLVYGRKYS-SFEYLVAFLISLGVSIFSLFP  157 (327)
T ss_pred             --HHHHHHhcCccC-cHHHHHHHHHHhheeeEEEec
Confidence              788899999995 777777777778887766643

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=80.33  E-value=1.9  Score=35.42  Aligned_cols=105  Identities=19%  Similarity=0.082  Sum_probs=65.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhhhHHH
Q 042874           34 KGLSYYVFVGYSYPLATLALLPLIFIFPSTTTVVPPFKFSLLLRIFLLSSIGVLSQTVGYIGIAYSSPTLSAAITNTIPA  113 (167)
Q Consensus        34 ~~~~p~~l~~~R~~~A~liL~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~g~~~~~~~~~gl~~tsa~~asii~~l~Pv  113 (167)
                      +|.|.+.--+.-+.++++++--    + +.  . ++.++..|. -.+-|++-...+.+++.+-+..+-+++=.+..+.-+
T Consensus       177 ~g~saiLPqAiGMv~~ali~~~----~-~~--~-~~~~K~t~~-nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgVi  247 (288)
T COG4975         177 DGLSAILPQAIGMVIGALILGF----F-KM--E-KRFNKYTWL-NIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVI  247 (288)
T ss_pred             cchhhhhHHHHHHHHHHHHHhh----c-cc--c-cchHHHHHH-HHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheee
Confidence            4555555555555565555421    1 21  1 233444444 355666656777888888887776666666666666


Q ss_pred             HHHHHHHHHhhcccCchhH----HHHHHHHHHHHHHHHh
Q 042874          114 FTFTLAILFSCLKMMSWIE----IIIIIIINNDTLTSKM  148 (167)
Q Consensus       114 ~~~ila~~~~~Er~~~~~~----~~Gi~l~~~Gv~li~~  148 (167)
                      ...+-+.++++||-+ +++    ++|+++.+.|+.++..
T Consensus       248 isTiGGIl~L~ekKt-kkEm~~v~iGiilivvgai~lg~  285 (288)
T COG4975         248 ISTIGGILFLGEKKT-KKEMVYVIIGIILIVVGAILLGI  285 (288)
T ss_pred             eeecceEEEEeccCc-hhhhhhhhhhHHHHHHHhhhhhe
Confidence            666777889999985 665    5677777778776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.99
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.85

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.99  E-value=1e-09  Score=80.56  Aligned_cols=71  Identities=17%  Similarity=0.038  Sum_probs=54.4

Q ss_pred             HHHHHHH-HHHHHHHHHHhhccchHHHHHH-hhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhcC
Q 042874           79 FLLSSIG-VLSQTVGYIGIAYSSPTLSAAI-TNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMDK  150 (167)
Q Consensus        79 ~~lgl~g-~~~~~~~~~gl~~tsa~~asii-~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~~  150 (167)
                      .++++++ ++++++++.++++.+++.+..+ .++.|+++.++++++++|+++ ..+++|+++.++|++++...+
T Consensus        33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls-~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD-LPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHhcCC
Confidence            3678888 8999999999999999999888 899999999999999999995 999999999999999998744

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.85  E-value=2.7e-08  Score=70.12  Aligned_cols=69  Identities=17%  Similarity=0.052  Sum_probs=63.8

Q ss_pred             HHHHHH-HHHHHHHHHHhhccchHHHHHH-hhhHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHhc
Q 042874           80 LLSSIG-VLSQTVGYIGIAYSSPTLSAAI-TNTIPAFTFTLAILFSCLKMMSWIEIIIIIIINNDTLTSKMD  149 (167)
Q Consensus        80 ~lgl~g-~~~~~~~~~gl~~tsa~~asii-~~l~Pv~~~ila~~~~~Er~~~~~~~~Gi~l~~~Gv~li~~~  149 (167)
                      +.++++ ..++.++..++++.+.+.+..+ .++.|+++.+++.++++|+++ ..|++|+.+.++|++.+...
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s-~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD-LPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHhcC
Confidence            577778 8999999999999999999888 799999999999999999995 99999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00